associate.py: TIMEOUT associate1.py: TIMEOUT bayesTesting.py: OK bioinformatics.py: OK bioinformatics1.py: FAILED classification_tree.py: OK Classify.py: OK classify2.py: OK classify3.py: OK classify4.py: TIMEOUT data selection.py: OK data.py: OK data1.py: FAILED data_domain_cont_disc.py: FAILED data_merge_conc.py: FAILED data_outliers_impute.py: OK evaluate.py: FAILED Evaluate2.py: FAILED hier_clustering.py: OK k-means.py: OK network1.py: TIMEOUT network2.py: FAILED predictions1.py: OK rank.py: OK regression.py: OK regression1.py: OK SOM.py: OK SVM.py: OK unsupervised1.py: TIMEOUT visualizations.py: OK visualizations1.py: OK visualizations2.py: OK ========== Time limit (15 min) exceeded in - associate.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: brown-selected.tab (File widget) ---- ---- Setting data set: always_one_missing___always_unknown_class___class_defined.tab (File widget) ---- ---- Setting data set: constant_class___continuous.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: iris.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous-noclass.tab (File widget) ---- ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: zoo-noclass.tab (File widget) ---- ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: constant_attribute___continuous.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ========== Time limit (15 min) exceeded in - associate1.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: constant_attribute___values_defined.tab (File widget) ---- ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- ---- Setting data set: monks-1.tab (File widget) ---- ---- Setting data set: iris.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: constant_attribute___values_defined.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- ---- Setting data set: (none) (File widget) ---- ---- Setting data set: cont_attribute___always_unknown_class___continuous.tab (File widget) ---- ---- Setting data set: brown-selected-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- ---- Setting data set: wine.tab (File widget) ---- ========== Exception in widgets - bioinformatics1.py script Unhandled exception of type Traceback: File: debugOne.py in line 77 Function name: Code: instance = module.GUIApplication() File: bioinformatics1.py in line 19 Function name: __init__ Code: self.createWidget('OWFunctionalAnnotation', 'icons/Unknown.png', 'Gene Functional Annotation', 1, self.signalManager) File: bioinformatics1.py in line 48 Function name: createWidget Code: widgetSettings = cPickle.loads(self.strSettings[caption]) Exception type: Exception value: ('unable to find to find enum: CheckState', , ('PyQt4.QtCore', 'CheckState', 2)) ========== Time limit (15 min) exceeded in - classify4.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:647: UserWarning: Can't compute sensitivity: one or both classes have no instances warnings.warn("Can't compute sensitivity: one or both classes have no instances") C:\Python25\lib\site-packages\orange\orngStat.py:678: UserWarning: Can't compute PPV: one or both classes have no instances warnings.warn("Can't compute PPV: one or both classes have no instances") C:\Python25\lib\site-packages\orange\orngStat.py:711: UserWarning: Can't compute F1: P + R is zero or not defined warnings.warn("Can't compute F1: P + R is zero or not defined") C:\Python25\lib\site-packages\orange\orngStat.py:755: UserWarning: Can't compute MCC: TP or TN is zero or not defined warnings.warn("Can't compute MCC: TP or TN is zero or not defined") ---- Setting data set: (none) (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWROC.py in line 855 Function name: testSetsSelectionChange Code: g.setShowIterations(list) File: OWROC.py in line 311 Function name: setShowIterations Code: self.calcAverageCurves() File: OWROC.py in line 323 Function name: calcAverageCurves Code: if self.showIterations[i]: Exception type: Exception value: list index out of range ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: always_one_missing-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: constant_class___continuous.tab (File widget) ---- ---- Setting data set: brown-selected.tab (File widget) ---- ========== Exception in widgets - data1.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_unknown_attribute.tab (File widget) ---- Unhandled exception of type Traceback: File: OWBaseWidget.py in line 601 Function name: processSignals Code: handler(value) File: OWMergeData.py in line 92 Function name: onDataAInput Code: self.dataA = orange.ExampleTable(dc, data) File: OWMergeData.py in line 89 Function name: Code: a.getValueFrom = lambda ex,f,i=i: ex[i] Exception type: Exception value: index 5 to large (> 4) ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_unknown_attribute.tab (File widget) ---- ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute___continuous.tab (File widget) ---- ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: always_one_missing___always_unknown_class___class_defined.tab (File widget) ---- ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: always_one_missing_always_unknown_class.tab (File widget) ---- ---- Setting data set: constant_attribute___continuous.tab (File widget) ---- ---- Setting data set: always_one_missing-noclass.tab (File widget) ---- ---- Setting data set: cont_attribute___always_unknown_class___continuous.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: always_unknown_attribute-noclass.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: always_unknown_attribute.tab (File widget) ---- Test finished ========== Exception in widgets - data_domain_cont_disc.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ---- Setting data set: always_unknown_attribute.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ---- Setting data set: zoo-noclass.tab (File widget) ---- ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: cont_attribute___constant_class___continuous.tab (File widget) ---- ------------------ Widget Attribute Distance (2). Set radio button classInteractions to index 3 Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWAttributeDistance.py in line 118 Function name: toggleClass Code: self.sendData() File: OWAttributeDistance.py in line 127 Function name: sendData Code: matrix = self.computeMatrix() File: OWAttributeDistance.py in line 100 Function name: computeMatrix Code: matrix[a1, a2] = (1.0 - orange.PearsonCorrelation(a1, a2, self.data, 0).r) / 2.0 Exception type: Exception value: betacf: a or b too big, or ITMAX too small. Widget settings are: classInteractions: 3 ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous-noclass.tab (File widget) ---- ---- Setting data set: cont_attribute___constant_class___continuous.tab (File widget) ---- ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: cont_attribute___always_unknown_class___continuous.tab (File widget) ---- ---- Setting data set: cont_attribute___constant_class___continuous.tab (File widget) ---- ---- Setting data set: always_unknown_class.tab (File widget) ---- Unhandled exception of type Traceback: File: OWBaseWidget.py in line 601 Function name: processSignals Code: handler(value) File: OWContinuize.py in line 110 Function name: setData Code: self.sendData() File: OWContinuize.py in line 143 Function name: sendData Code: domain = continuizer(self.data, 0, self.targetValue if self.classTreatment else -1) Exception type: Exception value: value index 0 out of range (0 - -1) ---- Setting data set: wine.tab (File widget) ---- ---- Setting data set: always_unknown_class.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- Test finished ========== Exception in widgets - data_merge_conc.py script ---- Setting data set: two_valued_attribute___continuous.tab (File (2) widget) ---- ---- Setting data set: constant_attribute___continuous.tab (File (2) widget) ---- ---- Setting data set: breastcancer2004.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_one_missing.tab (File (2) widget) ---- ---- Setting data set: wine-noclass.tab (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWMergeData.py in line 270 Function name: lbAttrBChange Code: self.sendData() File: OWMergeData.py in line 217 Function name: sendData Code: etAB = orange.ExampleTable([self.dataA, etBreduced]) Exception type: Exception value: 'orange.ExampleTable': mismatching value of attribute 'A1' in example #119 Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWMergeData.py in line 258 Function name: lbAttrAChange Code: self.sendData() File: OWMergeData.py in line 217 Function name: sendData Code: etAB = orange.ExampleTable([self.dataA, etBreduced]) Exception type: Exception value: 'orange.ExampleTable': mismatching value of attribute 'A1' in example #131 ---- Setting data set: brown-selected-noclass.tab (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWMergeData.py in line 258 Function name: lbAttrAChange Code: self.sendData() File: OWMergeData.py in line 217 Function name: sendData Code: etAB = orange.ExampleTable([self.dataA, etBreduced]) Exception type: Exception value: 'orange.ExampleTable': mismatching value of attribute 'alpha 7' in example #0 ---- Setting data set: breastcancer2004.tab (File (2) widget) ---- ---- Setting data set: brown-selected.tab (File (2) widget) ---- ---- Setting data set: always_unknown_class.tab (File (2) widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWMergeData.py in line 258 Function name: lbAttrAChange Code: self.sendData() File: OWMergeData.py in line 217 Function name: sendData Code: etAB = orange.ExampleTable([self.dataA, etBreduced]) Exception type: Exception value: 'orange.ExampleTable': mismatching value of attribute 'alpha 0' in example #3 Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWMergeData.py in line 258 Function name: lbAttrAChange Code: self.sendData() File: OWMergeData.py in line 217 Function name: sendData Code: etAB = orange.ExampleTable([self.dataA, etBreduced]) Exception type: Exception value: 'orange.ExampleTable': mismatching value of attribute 'alpha 0' in example #2 ---- Setting data set: always_unknown_attribute-noclass.tab (File (2) widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: constant_class___continuous.tab (File widget) ---- ---- Setting data set: constant_class___continuous.tab (File (2) widget) ---- ---- Setting data set: constant_class___values_defined.tab (File (2) widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File (2) widget) ---- ---- Setting data set: (none) (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: constant_class.tab (File (2) widget) ---- ---- Setting data set: cont_attribute___constant_class___continuous.tab (File (2) widget) ---- Test finished ========== Exception in widgets - evaluate.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:755: UserWarning: Can't compute MCC: TP or TN is zero or not defined warnings.warn("Can't compute MCC: TP or TN is zero or not defined") ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: wine.tab (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWROC.py in line 855 Function name: testSetsSelectionChange Code: g.setShowIterations(list) File: OWROC.py in line 311 Function name: setShowIterations Code: self.calcAverageCurves() File: OWROC.py in line 323 Function name: calcAverageCurves Code: if self.showIterations[i]: Exception type: Exception value: list index out of range ---- Setting data set: zoo-noclass.tab (File widget) ---- C:\Python25\lib\site-packages\orange\OrangeWidgets\Classify\OWKNN.py:91: AttributeWarning: 'normalize' is not a builtin attribute of 'orange.ExamplesDistanceConstructor_Hamming' distconst.normalize = self.normalize ---- Setting data set: monks-1.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:678: UserWarning: Can't compute PPV: one or both classes have no instances warnings.warn("Can't compute PPV: one or both classes have no instances") C:\Python25\lib\site-packages\orange\orngStat.py:711: UserWarning: Can't compute F1: P + R is zero or not defined warnings.warn("Can't compute F1: P + R is zero or not defined") ---- Setting data set: always_unknown_attribute-noclass.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute___continuous.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:665: UserWarning: Can't compute specificity: one or both classes have no instances warnings.warn("Can't compute specificity: one or both classes have no instances") ---- Setting data set: brown-selected.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ---- Setting data set: one_unknown_class.tab (File widget) ---- ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: always_one_missing_always_unknown_class.tab (File widget) ---- ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: always_one_missing_always_unknown_class.tab (File widget) ---- ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: always_unknown_attribute-noclass.tab (File widget) ---- Test finished ========== Exception in widgets - Evaluate2.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:755: UserWarning: Can't compute MCC: TP or TN is zero or not defined warnings.warn("Can't compute MCC: TP or TN is zero or not defined") ---- Setting data set: wine-noclass.tab (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWROC.py in line 855 Function name: testSetsSelectionChange Code: g.setShowIterations(list) File: OWROC.py in line 311 Function name: setShowIterations Code: self.calcAverageCurves() File: OWROC.py in line 323 Function name: calcAverageCurves Code: if self.showIterations[i]: Exception type: Exception value: list index out of range C:\Python25\lib\site-packages\orange\OrangeWidgets\Classify\OWKNN.py:91: AttributeWarning: 'normalize' is not a builtin attribute of 'orange.ExamplesDistanceConstructor_Hamming' distconst.normalize = self.normalize ---- Setting data set: always_one_missing.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: monks-1.tab (File widget) ---- ---- Setting data set: always_one_missing-noclass.tab (File widget) ---- ---- Setting data set: constant_attribute___values_defined.tab (File widget) ---- ---- Setting data set: zoo-noclass.tab (File widget) ---- ---- Setting data set: one_unknown_class.tab (File widget) ---- C:\Python25\lib\site-packages\orange\orngStat.py:647: UserWarning: Can't compute sensitivity: one or both classes have no instances warnings.warn("Can't compute sensitivity: one or both classes have no instances") C:\Python25\lib\site-packages\orange\orngStat.py:678: UserWarning: Can't compute PPV: one or both classes have no instances warnings.warn("Can't compute PPV: one or both classes have no instances") C:\Python25\lib\site-packages\orange\orngStat.py:711: UserWarning: Can't compute F1: P + R is zero or not defined warnings.warn("Can't compute F1: P + R is zero or not defined") ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: lenses_two_class.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_one_missing-noclass.tab (File widget) ---- ---- Setting data set: brown-selected.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous.tab (File widget) ---- ---- Setting data set: titanic.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: constant_class___values_defined.tab (File widget) ---- Test finished ========== Time limit (15 min) exceeded in - network1.py script ---- Setting data set: wine-noclass.tab (File widget) ---- C:\Python25\lib\site-packages\numpy\lib\function_base.py:166: FutureWarning: The semantics of histogram will be modified in release 1.2 to improve outlier handling. The new behavior can be obtained using new=True. Note that the new version accepts/returns the bin edges instead of the left bin edges. Please read the docstring for more information. Please read the docstring for more information.""", FutureWarning) C:\Python25\lib\site-packages\orange\OrangeWidgets\Unsupervised\OWNetworkFromDistances.py:287: AttributeWarning: 'items' is not a builtin attribute of 'orange.SymMatrix' matrix.items = self.graph.items ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ---- Setting data set: cont_attribute___constant_class___continuous.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ------------------ Widget Net Explorer (0% complete). Clicking button eSim. State is 1 Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWNetExplorer.py in line 521 Function name: exactSimulation Code: self.mdsComponents(orngNetwork.MdsType.exactSimulation) File: OWNetExplorer.py in line 512 Function name: mdsComponents Code: self.visualize.mdsComponentsAvgLinkage(self.mdsSteps, self.mdsRefresh, self.mdsProgress, self.updateCanvas, self.mdsTorgerson, self.mdsStressDelta, scalingRatio = self.scalingRatio) File: orngNetwork.py in line 664 Function name: mdsComponentsAvgLinkage Code: return self.mdsComponents(mdsSteps, mdsRefresh, callbackProgress, callbackUpdateCanvas, torgerson, minStressDelta, True, scalingRatio=scalingRatio) File: orngNetwork.py in line 641 Function name: mdsComponents Code: self.mds.Torgerson() File: orngMDS.py in line 167 Function name: Torgerson Code: self.points = orange.FloatListList(dot(Ut,Dt)) Exception type: Exception value: matrices are not aligned Widget settings are: autoSendSelection: False spinExplicit: None spinPercentage: None maxLinkSize: 4 maxVertexSize: 6 renderAntialiased: False labelsOnMarkedOnly: 0 invertSize: 0 optMethod: 3 lastVertexSizeColumn: (same size) lastColorColumn: (same color) lastNameComponentAttribute: lastLabelColumns: set([]) lastTooltipColumns: set([]) showWeights: False showIndexes: True showEdgeLabels: True colorSettings: None selectedSchemaIndex: 0 edgeColorSettings: [('net_edges', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(204, 204, 204), (179, 226, 205), (253, 205, 172), (203, 213, 232), (244, 202, 228), (230, 245, 201), (255, 242, 174), (241, 226, 204)])]]), ('Default', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(0, 0, 255), (255, 0, 0), (0, 255, 0), (255, 128, 0), (255, 255, 0), (255, 0, 255), (0, 255, 255), (128, 0, 255), (0, 128, 255), (255, 223, 128), (127, 111, 64), (92, 46, 0), (0, 84, 0), (192, 192, 0), (0, 127, 127), (128, 0, 0), (127, 0, 127)])]])] selectedEdgeSchemaIndex: 0 showMissingValues: False fontSize: 14 mdsTorgerson: True mdsAvgLinkage: True mdsSteps: 119 mdsRefresh: 29 mdsStressDelta: 1e-005 organism: goa_human showTextMiningInfo: False toolbarSelection: 0 ---- Setting data set: wine.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: constant_class.tab (File widget) ---- ---- Setting data set: always_unknown_class.tab (File widget) ---- ---- Setting data set: zoo-noclass.tab (File widget) ---- ---- Setting data set: cont_attribute___always_unknown_class___continuous.tab (File widget) ---- ------------------ Widget Net Explorer (99.00% complete, remaining time: 0:00). Changed value of combo nameComponentAttribute to age Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWNetExplorer.py in line 641 Function name: nameComponents Code: allGenes = set(reduce(operator.add, [e[str(self.nameComponentCombo.currentText())].value.split(', ') for e in self.visualize.graph.items])) Exception type: Exception value: 'float' object has no attribute 'split' ========== Exception in widgets - network2.py script ---- Setting data set: wine-noclass.tab (File widget) ---- C:\Python25\lib\site-packages\numpy\lib\function_base.py:166: FutureWarning: The semantics of histogram will be modified in release 1.2 to improve outlier handling. The new behavior can be obtained using new=True. Note that the new version accepts/returns the bin edges instead of the left bin edges. Please read the docstring for more information. Please read the docstring for more information.""", FutureWarning) C:\Python25\lib\site-packages\orange\OrangeWidgets\Unsupervised\OWNetworkFromDistances.py:287: AttributeWarning: 'items' is not a builtin attribute of 'orange.SymMatrix' matrix.items = self.graph.items ---- Setting data set: constant_class___values_defined.tab (File widget) ---- ---- Setting data set: always_unknown_class.tab (File widget) ---- ---- Setting data set: brown-selected-noclass.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: (none) (File widget) ---- ---- Setting data set: constant_class___continuous.tab (File widget) ---- ------------------ Widget Net Explorer (0% complete). Clicking button MDS. State is 1 Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWNetExplorer.py in line 524 Function name: mdsVertices Code: self.mdsComponents(orngNetwork.MdsType.MDS) File: OWNetExplorer.py in line 512 Function name: mdsComponents Code: self.visualize.mdsComponentsAvgLinkage(self.mdsSteps, self.mdsRefresh, self.mdsProgress, self.updateCanvas, self.mdsTorgerson, self.mdsStressDelta, scalingRatio = self.scalingRatio) File: orngNetwork.py in line 664 Function name: mdsComponentsAvgLinkage Code: return self.mdsComponents(mdsSteps, mdsRefresh, callbackProgress, callbackUpdateCanvas, torgerson, minStressDelta, True, scalingRatio=scalingRatio) File: orngNetwork.py in line 641 Function name: mdsComponents Code: self.mds.Torgerson() File: orngMDS.py in line 167 Function name: Torgerson Code: self.points = orange.FloatListList(dot(Ut,Dt)) Exception type: Exception value: matrices are not aligned Widget settings are: autoSendSelection: False spinExplicit: None spinPercentage: None maxLinkSize: 2 maxVertexSize: 7 renderAntialiased: True labelsOnMarkedOnly: True invertSize: False optMethod: 4 lastVertexSizeColumn: (same size) lastColorColumn: astigmatic lastNameComponentAttribute: lastLabelColumns: set(['tear_rate']) lastTooltipColumns: set([]) showWeights: False showIndexes: True showEdgeLabels: False colorSettings: None selectedSchemaIndex: 0 edgeColorSettings: [('net_edges', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(204, 204, 204), (179, 226, 205), (253, 205, 172), (203, 213, 232), (244, 202, 228), (230, 245, 201), (255, 242, 174), (241, 226, 204)])]]), ('Default', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(0, 0, 255), (255, 0, 0), (0, 255, 0), (255, 128, 0), (255, 255, 0), (255, 0, 255), (0, 255, 255), (128, 0, 255), (0, 128, 255), (255, 223, 128), (127, 111, 64), (92, 46, 0), (0, 84, 0), (192, 192, 0), (0, 127, 127), (128, 0, 0), (127, 0, 127)])]])] selectedEdgeSchemaIndex: 0 showMissingValues: 0 fontSize: 11 mdsTorgerson: True mdsAvgLinkage: True mdsSteps: 119 mdsRefresh: 30 mdsStressDelta: 1e-005 organism: goa_human showTextMiningInfo: 0 toolbarSelection: 0 ---- Setting data set: always_unknown_attribute-noclass.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: (none) (File widget) ---- ---- Setting data set: one_unknown_class.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: always_unknown_attribute___continuous-noclass.tab (File widget) ---- ---- Setting data set: always_one_missing_always_unknown_class.tab (File widget) ---- ---- Setting data set: cont_attribute___always_unknown_class___continuous.tab (File widget) ---- ---- Setting data set: constant_attribute.tab (File widget) ---- ---- Setting data set: always_one_missing.tab (File widget) ---- ------------------ Widget Net Explorer (0% complete). Clicking button Draw Force. State is 1 Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWNetExplorer.py in line 391 Function name: drawForce Code: self.graph.forceVectors = self.visualize.computeForces() File: orngNetwork.py in line 163 Function name: computeForces Code: d = self.vertexDistance[u, v] Exception type: Exception value: 'NoneType' object is unsubscriptable Widget settings are: autoSendSelection: False spinExplicit: None spinPercentage: None maxLinkSize: 4 maxVertexSize: 5 renderAntialiased: True labelsOnMarkedOnly: False invertSize: True optMethod: 5 lastVertexSizeColumn: (same size) lastColorColumn: (same color) lastNameComponentAttribute: lastLabelColumns: set(['astigmatic']) lastTooltipColumns: set(['astigmatic', 'age']) showWeights: True showIndexes: True showEdgeLabels: True colorSettings: None selectedSchemaIndex: 0 edgeColorSettings: [('net_edges', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(204, 204, 204), (179, 226, 205), (253, 205, 172), (203, 213, 232), (244, 202, 228), (230, 245, 201), (255, 242, 174), (241, 226, 204)])]]), ('Default', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(0, 0, 255), (255, 0, 0), (0, 255, 0), (255, 128, 0), (255, 255, 0), (255, 0, 255), (0, 255, 255), (128, 0, 255), (0, 128, 255), (255, 223, 128), (127, 111, 64), (92, 46, 0), (0, 84, 0), (192, 192, 0), (0, 127, 127), (128, 0, 0), (127, 0, 127)])]])] selectedEdgeSchemaIndex: 0 showMissingValues: True fontSize: 12 mdsTorgerson: True mdsAvgLinkage: True mdsSteps: 119 mdsRefresh: 26 mdsStressDelta: 1e-005 organism: goa_human showTextMiningInfo: True toolbarSelection: 0 ---- Setting data set: always_unknown_class.tab (File widget) ---- ---- Setting data set: always_unknown_attribute.tab (File widget) ---- Test finished ========== Time limit (15 min) exceeded in - unsupervised1.py script ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- C:\Python25\lib\site-packages\numpy\lib\function_base.py:166: FutureWarning: The semantics of histogram will be modified in release 1.2 to improve outlier handling. The new behavior can be obtained using new=True. Note that the new version accepts/returns the bin edges instead of the left bin edges. Please read the docstring for more information. Please read the docstring for more information.""", FutureWarning) C:\Python25\lib\site-packages\orange\OrangeWidgets\Unsupervised\OWNetworkFromDistances.py:287: AttributeWarning: 'items' is not a builtin attribute of 'orange.SymMatrix' matrix.items = self.graph.items C:\Python25\lib\site-packages\orange\OrangeWidgets\Unsupervised\OWSymMatrixTransform.py:96: AttributeWarning: 'items' is not a builtin attribute of 'orange.SymMatrix' matrix.items = self.matrix.items ---- Setting data set: cont_attribute___constant_class___continuous.tab (File widget) ---- ---- Setting data set: zoo.tab (File widget) ---- ---- Setting data set: constant_attribute___values_defined.tab (File widget) ---- ------------------ Widget Distance Map (2). Changed value of combo Sort to Clustering with ordered leafs Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWDistanceMap.py in line 806 Function name: sortItems Code: self.sorting[self.Sort][1]() File: OWDistanceMap.py in line 795 Function name: sortClusteringOrdered Code: linkage=orange.HierarchicalClustering.Average) Exception type: Exception value: 'orange.HierarchicalClustering': distance matrix contains negative element at (1, 0) Widget settings are: CellWidth: 15 CellHeight: 15 Merge: 1 Gamma: 1.0 CutLow: 0.0 CutHigh: 0.0 CutEnabled: False Sort: 4 SquareCells: True ShowLegend: False ShowLabels: True ShowBalloon: False Grid: False savedGrid: 1 ShowItemsInBalloon: False SendOnRelease: True colorSettings: None selectedSchemaIndex: 0 palette: [4278190335L, 4278256125L, 4278321916L, 4278387707L, 4278453498L, 4278519289L, 4278585080L, 4278650871L, 4278716662L, 4278782453L, 4278848244L, 4278914035L, 4278979826L, 4279045617L, 4279111408L, 4279177199L, 4279242990L, 4279308781L, 4279374572L, 4279440363L, 4279506154L, 4279571945L, 4279637736L, 4279703527L, 4279769318L, 4279835109L, 4279900900L, 4279966691L, 4280032482L, 4280098273L, 4280164064L, 4280229855L, 4280295646L, 4280361437L, 4280427228L, 4280493019L, 4280558810L, 4280624601L, 4280690392L, 4280756183L, 4280821974L, 4280887765L, 4280953556L, 4281019347L, 4281085138L, 4281150929L, 4281216720L, 4281282511L, 4281348302L, 4281414093L, 4281479884L, 4281545675L, 4281611466L, 4281677257L, 4281743048L, 4281808839L, 4281874630L, 4281940421L, 4282006212L, 4282072003L, 4282137794L, 4282203585L, 4282269376L, 4282335167L, 4282400958L, 4282466749L, 4282532540L, 4282598331L, 4282664122L, 4282729913L, 4282795704L, 4282861495L, 4282927286L, 42829930 77L, 4283058868L, 4283124659L, 4283190450L, 4283256241L, 4283322032L, 4283387823L, 4283453614L, 4283519405L, 4283585196L, 4283650987L, 4283782570L, 4283848360L, 4283914151L, 4283979942L, 4284045733L, 4284111524L, 4284177315L, 4284243106L, 4284308897L, 4284374688L, 4284440479L, 4284506270L, 4284572061L, 4284637852L, 4284703643L, 4284769434L, 4284835225L, 4284901016L, 4284966807L, 4285032598L, 4285098389L, 4285164180L, 4285229971L, 4285295762L, 4285361553L, 4285427344L, 4285493135L, 4285558926L, 4285624717L, 4285690508L, 4285756299L, 4285822090L, 4285887881L, 4285953672L, 4286019463L, 4286085254L, 4286151045L, 4286216836L, 4286282627L, 4286348418L, 4286414209L, 4286480000L, 4286545791L, 4286611582L, 4286677373L, 4286743164L, 4286808955L, 4286874746L, 4286940537L, 4287006328L, 4287072119L, 4287137910L, 4287203701L, 4287269492L, 4287335283L, 4287401074L, 4287466865L, 4287532656L, 4287598447L, 4287664238L, 4287730029L, 4287795820L, 4287861611L, 4287927402L, 4287993193L, 428805898 4L, 4288124775L, 4288190566L, 4288256357L, 4288322148L, 4288387939L, 4288453730L, 4288519521L, 4288585312L, 4288651103L, 4288716894L, 4288782685L, 4288848476L, 4288914267L, 4288980058L, 4289045849L, 4289111640L, 4289177431L, 4289243222L, 4289374805L, 4289440595L, 4289506386L, 4289572177L, 4289637968L, 4289703759L, 4289769550L, 4289835341L, 4289901132L, 4289966923L, 4290032714L, 4290098505L, 4290164296L, 4290230087L, 4290295878L, 4290361669L, 4290427460L, 4290493251L, 4290559042L, 4290624833L, 4290690624L, 4290756415L, 4290822206L, 4290887997L, 4290953788L, 4291019579L, 4291085370L, 4291151161L, 4291216952L, 4291282743L, 4291348534L, 4291414325L, 4291480116L, 4291545907L, 4291611698L, 4291677489L, 4291743280L, 4291809071L, 4291874862L, 4291940653L, 4292006444L, 4292072235L, 4292138026L, 4292203817L, 4292269608L, 4292335399L, 4292401190L, 4292466981L, 4292532772L, 4292598563L, 4292664354L, 4292730145L, 4292795936L, 4292861727L, 4292927518L, 4292993309L, 4293059100L, 4293124891 L, 4293190682L, 4293256473L, 4293322264L, 4293388055L, 4293453846L, 4293519637L, 4293585428L, 4293651219L, 4293717010L, 4293782801L, 4293848592L, 4293914383L, 4293980174L, 4294045965L, 4294111756L, 4294177547L, 4294243338L, 4294309129L, 4294374920L, 4294440711L, 4294506502L, 4294572293L, 4294638084L, 4294703875L, 4294967295L, 4294967295L, 4294967295L, 4294967295L, 4278190080L, 4288716964L] ---- Setting data set: constant_attribute-noclass.tab (File widget) ---- Unhandled exception of type Traceback: File: OWGUI.py in line 1406 Function name: __call__ Code: self.f(**kwds) File: OWDistanceMap.py in line 487 Function name: drawDistanceMap Code: clusterTop.setSize(width, -clusterHeight) File: OWClustering.py in line 78 Function name: setSize Code: scaleY = float(height) / self.cluster.height Exception type: Exception value: float division ---- Setting data set: always_unknown_attribute___values_defined.tab (File widget) ---- ---- Setting data set: two_valued_attribute___continuous.tab (File widget) ---- ------------------ Widget Net Explorer (0% complete). Clicking button eSim. State is 1 Unhandled exception of type Traceback: File: debugOne.py in line 214 Function name: Code: callback() File: OWNetExplorer.py in line 521 Function name: exactSimulation Code: self.mdsComponents(orngNetwork.MdsType.exactSimulation) File: OWNetExplorer.py in line 512 Function name: mdsComponents Code: self.visualize.mdsComponentsAvgLinkage(self.mdsSteps, self.mdsRefresh, self.mdsProgress, self.updateCanvas, self.mdsTorgerson, self.mdsStressDelta, scalingRatio = self.scalingRatio) File: orngNetwork.py in line 664 Function name: mdsComponentsAvgLinkage Code: return self.mdsComponents(mdsSteps, mdsRefresh, callbackProgress, callbackUpdateCanvas, torgerson, minStressDelta, True, scalingRatio=scalingRatio) File: orngNetwork.py in line 641 Function name: mdsComponents Code: self.mds.Torgerson() File: orngMDS.py in line 167 Function name: Torgerson Code: self.points = orange.FloatListList(dot(Ut,Dt)) Exception type: Exception value: matrices are not aligned Widget settings are: autoSendSelection: False spinExplicit: None spinPercentage: None maxLinkSize: 2 maxVertexSize: 6 renderAntialiased: False labelsOnMarkedOnly: 0 invertSize: 0 optMethod: 0 lastVertexSizeColumn: (same size) lastColorColumn: (same color) lastNameComponentAttribute: lastLabelColumns: set([]) lastTooltipColumns: set(['age']) showWeights: 0 showIndexes: True showEdgeLabels: True colorSettings: None selectedSchemaIndex: 0 edgeColorSettings: [('net_edges', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(204, 204, 204), (179, 226, 205), (253, 205, 172), (203, 213, 232), (244, 202, 228), (230, 245, 201), (255, 242, 174), (241, 226, 204)])]]), ('Default', [[], [('contPalette', (4294967295L, 4278190080L, 0))], [('discPalette', [(0, 0, 255), (255, 0, 0), (0, 255, 0), (255, 128, 0), (255, 255, 0), (255, 0, 255), (0, 255, 255), (128, 0, 255), (0, 128, 255), (255, 223, 128), (127, 111, 64), (92, 46, 0), (0, 84, 0), (192, 192, 0), (0, 127, 127), (128, 0, 0), (127, 0, 127)])]])] selectedEdgeSchemaIndex: 0 showMissingValues: 0 fontSize: 11 mdsTorgerson: True mdsAvgLinkage: True mdsSteps: 120 mdsRefresh: 29 mdsStressDelta: 1e-005 organism: goa_human showTextMiningInfo: 0 toolbarSelection: 0 ---- Setting data set: wine-noclass.tab (File widget) ---- ---- Setting data set: always_one_missing_always_unknown_class.tab (File widget) ---- ---- Setting data set: always_unknown_class.tab (File widget) ---- ---- Setting data set: lenses.tab (File widget) ---- ---- Setting data set: always_one_missing___always_unknown_class___class_defined.tab (File widget) ---- ---- Setting data set: brown-selected.tab (File widget) ----