[ [ [ "GDS10.tab" ], { "title": "Type 1 diabetes gene expression profiling", "description": "Examination of spleen and thymus of type 1 diabetes nonobese diabetic (NOD) mouse, four NOD-derived diabetes-resistant congenic strains and two nondiabetic control strains.", "type": "Expression profiling by array", "pubmed_id": "11827943", "platform": "GPL24", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "39114", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE11", "order": "none", "update_date": "Jul 15 2003", "subsets": [ { "dataset_id": "GDS10", "description": "spleen", "sample_id": [ "GSM582", "GSM583", "GSM584", "GSM585", "GSM586", "GSM587", "GSM588", "GSM589", "GSM590", "GSM591", "GSM592", "GSM593", "GSM594", "GSM595" ], "type": "tissue", "id": "GDS10_1" }, { "dataset_id": "GDS10", "description": "thymus", "sample_id": [ "GSM596", "GSM597", "GSM598", "GSM599", "GSM600", "GSM601", "GSM602", "GSM603", "GSM604", "GSM605", "GSM606", "GSM607", "GSM608", "GSM609" ], "type": "tissue", "id": "GDS10_2" }, { "dataset_id": "GDS10", "description": "NOD", "sample_id": [ "GSM582", "GSM589", "GSM596", "GSM603" ], "type": "strain", "id": "GDS10_3" }, { "dataset_id": "GDS10", "description": "Idd3", "sample_id": [ "GSM583", "GSM590", "GSM597", "GSM604" ], "type": "strain", "id": "GDS10_4" }, { "dataset_id": "GDS10", "description": "Idd5", "sample_id": [ "GSM584", "GSM591", "GSM598", "GSM605" ], "type": "strain", "id": "GDS10_5" }, { "dataset_id": "GDS10", "description": "Idd3+Idd5", "sample_id": [ "GSM585", "GSM592", "GSM599", "GSM606" ], "type": "strain", "id": "GDS10_6" }, { "dataset_id": "GDS10", "description": "Idd9", "sample_id": [ "GSM586", "GSM593", "GSM600", "GSM607" ], "type": "strain", "id": "GDS10_7" }, { "dataset_id": "GDS10", "description": "B10.H2g7", "sample_id": [ "GSM587", "GSM594", "GSM601", "GSM608" ], "type": "strain", "id": "GDS10_8" }, { "dataset_id": "GDS10", "description": "B10.H2g7 Idd3", "sample_id": [ "GSM588", "GSM595", "GSM602", "GSM609" ], "type": "strain", "id": "GDS10_9" }, { "dataset_id": "GDS10", "description": "diabetic", "sample_id": [ "GSM582", "GSM589", "GSM596", "GSM603" ], "type": "disease state", "id": "GDS10_10" }, { "dataset_id": "GDS10", "description": "diabetic-resistant", "sample_id": [ "GSM583", "GSM590", "GSM597", "GSM604", "GSM584", "GSM591", "GSM598", "GSM605", "GSM585", "GSM592", "GSM599", "GSM606", "GSM586", "GSM593", "GSM600", "GSM607" ], "type": "disease state", "id": "GDS10_11" }, { "dataset_id": "GDS10", "description": "nondiabetic", "sample_id": [ "GSM587", "GSM594", "GSM601", "GSM608", "GSM588", "GSM595", "GSM602", "GSM609" ], "type": "disease state", "id": "GDS10_12" } ], "taxid": "10090", "genes": 29942, "aggregation_function": "mean", "name": "GDS10", "version": 1.0, "instances": "28", "variables": 29946, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS10.tab", "compression": "gz" } ], [ [ "GDS100.tab" ], { "title": "UV exposure time course (ecoli_8.0)", "description": "Time course of UV-responsive genes and their role in cellular recovery. lexA SOS-deficient strains analyzed.", "type": "Expression profiling by array", "pubmed_id": "11333217", "platform": "GPL18", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5764", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE9", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS100", "description": "not irradiated", "sample_id": [ "GSM542", "GSM543", "GSM549" ], "type": "protocol", "id": "GDS100_1" }, { "dataset_id": "GDS100", "description": "irradiated", "sample_id": [ "GSM544", "GSM545", "GSM546", "GSM547", "GSM548" ], "type": "protocol", "id": "GDS100_2" }, { "dataset_id": "GDS100", "description": "0 minute", "sample_id": [ "GSM549" ], "type": "time", "id": "GDS100_3" }, { "dataset_id": "GDS100", "description": "5 minute", "sample_id": [ "GSM547" ], "type": "time", "id": "GDS100_4" }, { "dataset_id": "GDS100", "description": "10 minute", "sample_id": [ "GSM544" ], "type": "time", "id": "GDS100_5" }, { "dataset_id": "GDS100", "description": "20 minute", "sample_id": [ "GSM545", "GSM542" ], "type": "time", "id": "GDS100_6" }, { "dataset_id": "GDS100", "description": "40 minute", "sample_id": [ "GSM546" ], "type": "time", "id": "GDS100_7" }, { "dataset_id": "GDS100", "description": "60 minute", "sample_id": [ "GSM548", "GSM543" ], "type": "time", "id": "GDS100_8" } ], "taxid": "562", "genes": 4248, "aggregation_function": "mean", "name": "GDS100", "version": 1.0, "instances": "8", "variables": 4251, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS100.tab", "compression": "gz" } ], [ [ "GDS1001.tab" ], { "title": "Na,K-ATPase alpha 1 isoform reduced expression effect on hearts", "description": "Expression profiling of hearts from 8 to 16 week old adult males lacking one copy of the Na,K-ATPase alpha 1 isoform. Na,K-ATPase alpha 1 isoform expression is reduced by half in heterozygous null mutants. Results provide insight into the role of the Na,K-ATPase alpha 1 isoform in the heart.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1134", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1001", "description": "wild type", "sample_id": [ "GSM19023", "GSM19024" ], "type": "genotype/variation", "id": "GDS1001_1" }, { "dataset_id": "GDS1001", "description": "Na,K-ATPase alpha1 +/-", "sample_id": [ "GSM19025", "GSM19026" ], "type": "genotype/variation", "id": "GDS1001_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1001", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1001.tab", "compression": "gz" } ], [ [ "GDS1002.tab" ], { "title": "Lung response to urban particulate matter: time course", "description": "Analysis of lungs from hypersensitive males exposed to urban particulate matter. Males exposed to 10 mg Ottawa dust sample EHC-93 per kg of body weight. Lungs examined at various time points up to 40 hours after exposure. Results provide insight into the molecular effects of exposure to dust.", "type": "Expression profiling by array", "pubmed_id": "15764483", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE1796", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1002", "description": "none", "sample_id": [ "GSM31012" ], "type": "agent", "id": "GDS1002_1" }, { "dataset_id": "GDS1002", "description": "saline", "sample_id": [ "GSM31011" ], "type": "agent", "id": "GDS1002_2" }, { "dataset_id": "GDS1002", "description": "EHC-93", "sample_id": [ "GSM31008", "GSM31009", "GSM31010" ], "type": "agent", "id": "GDS1002_3" }, { "dataset_id": "GDS1002", "description": "0 h", "sample_id": [ "GSM31012" ], "type": "time", "id": "GDS1002_4" }, { "dataset_id": "GDS1002", "description": "2 to 24 h", "sample_id": [ "GSM31011" ], "type": "time", "id": "GDS1002_5" }, { "dataset_id": "GDS1002", "description": "2 to 6 h", "sample_id": [ "GSM31008" ], "type": "time", "id": "GDS1002_6" }, { "dataset_id": "GDS1002", "description": "15 to 21 h", "sample_id": [ "GSM31009" ], "type": "time", "id": "GDS1002_7" }, { "dataset_id": "GDS1002", "description": "23 to 40 h", "sample_id": [ "GSM31010" ], "type": "time", "id": "GDS1002_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1002", "version": 1.0, "instances": "5", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1002.tab", "compression": "gz" } ], [ [ "GDS1003.tab" ], { "title": "Embryogenesis and early fetal development: time course", "description": "Expression profiling of embryos at various days of gestation up to 21 days and fetuses and fetal membranes at 27 and 28 days of gestation. Results provide insight into the regulation of embryonic, fetal, and fetal membrane differentiation.", "type": "Expression profiling by array", "pubmed_id": "15560851", "platform": "GPL1221", "platform_organism": "Bos taurus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4608", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE1414", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1003", "description": "embryo", "sample_id": [ "GSM23324", "GSM23325", "GSM23326", "GSM23327", "GSM26510", "GSM26511" ], "type": "tissue", "id": "GDS1003_1" }, { "dataset_id": "GDS1003", "description": "fetus", "sample_id": [ "GSM23331", "GSM23332" ], "type": "tissue", "id": "GDS1003_2" }, { "dataset_id": "GDS1003", "description": "fetal membrane", "sample_id": [ "GSM23328", "GSM23329", "GSM23330" ], "type": "tissue", "id": "GDS1003_3" }, { "dataset_id": "GDS1003", "description": "7 d", "sample_id": [ "GSM23324" ], "type": "development stage", "id": "GDS1003_4" }, { "dataset_id": "GDS1003", "description": "14 d", "sample_id": [ "GSM23325", "GSM26510" ], "type": "development stage", "id": "GDS1003_5" }, { "dataset_id": "GDS1003", "description": "19 d", "sample_id": [ "GSM26511" ], "type": "development stage", "id": "GDS1003_6" }, { "dataset_id": "GDS1003", "description": "20 d", "sample_id": [ "GSM23326" ], "type": "development stage", "id": "GDS1003_7" }, { "dataset_id": "GDS1003", "description": "21 d", "sample_id": [ "GSM23327" ], "type": "development stage", "id": "GDS1003_8" }, { "dataset_id": "GDS1003", "description": "27 d", "sample_id": [ "GSM23328", "GSM23329", "GSM23331" ], "type": "development stage", "id": "GDS1003_9" }, { "dataset_id": "GDS1003", "description": "28 d", "sample_id": [ "GSM23330", "GSM23332" ], "type": "development stage", "id": "GDS1003_10" } ], "taxid": "9913", "genes": 2333, "aggregation_function": "mean", "name": "GDS1003", "version": 1.0, "instances": "11", "variables": 2336, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1003.tab", "compression": "gz" } ], [ [ "GDS1009.tab" ], { "title": "Male and female salivary gland comparison", "description": "Expression profiling of 9 week old BALB/c male and female submandibular, sublingual, and parotid salivary glands. Lacrimal and meibomian glands also examined. Results provide insight into the differences between male and female salivary glands.", "type": "Expression profiling by array", "pubmed_id": "15668334", "platform": "GPL1310", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10500", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE1503", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1009", "description": "male", "sample_id": [ "GSM25995", "GSM25996", "GSM25997", "GSM26000", "GSM26001", "GSM26004", "GSM26005", "GSM27176", "GSM27177", "GSM27178", "GSM27181", "GSM27182", "GSM27183" ], "type": "gender", "id": "GDS1009_1" }, { "dataset_id": "GDS1009", "description": "female", "sample_id": [ "GSM25992", "GSM25993", "GSM25994", "GSM25998", "GSM25999", "GSM26002", "GSM26003", "GSM27173", "GSM27174", "GSM27175", "GSM27179", "GSM27180", "GSM27184" ], "type": "gender", "id": "GDS1009_2" }, { "dataset_id": "GDS1009", "description": "lacrimal gland", "sample_id": [ "GSM27173", "GSM27174", "GSM27175", "GSM27176", "GSM27177", "GSM27178" ], "type": "tissue", "id": "GDS1009_3" }, { "dataset_id": "GDS1009", "description": "meibomian gland", "sample_id": [ "GSM27179", "GSM27180", "GSM27181", "GSM27182", "GSM27183", "GSM27184" ], "type": "tissue", "id": "GDS1009_4" }, { "dataset_id": "GDS1009", "description": "submandibular gland", "sample_id": [ "GSM25992", "GSM25993", "GSM25994", "GSM25995", "GSM25996", "GSM25997" ], "type": "tissue", "id": "GDS1009_5" }, { "dataset_id": "GDS1009", "description": "sublingual gland", "sample_id": [ "GSM25998", "GSM25999", "GSM26000", "GSM26001" ], "type": "tissue", "id": "GDS1009_6" }, { "dataset_id": "GDS1009", "description": "parotid gland", "sample_id": [ "GSM26002", "GSM26003", "GSM26004", "GSM26005" ], "type": "tissue", "id": "GDS1009_7" } ], "taxid": "10090", "genes": 9940, "aggregation_function": "mean", "name": "GDS1009", "version": 1.0, "instances": "26", "variables": 9943, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1009.tab", "compression": "gz" } ], [ [ "GDS1010.tab" ], { "title": "Bone marrow and muscle Side Population cell comparison", "description": "Expression profiling of Side Population (SP) cells from bone marrow and muscle of 4 to 5 week old C57BL/10SnJ males. Main Population from bone marrow and muscle also examined. Results provide insight into the similarities and differences between SP cells from different tissues.", "type": "Expression profiling by array", "pubmed_id": "15652349", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1571", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1010", "description": "bone marrow", "sample_id": [ "GSM26999", "GSM27000", "GSM27001", "GSM27002", "GSM27003", "GSM27004", "GSM27005", "GSM27006", "GSM27007", "GSM27008" ], "type": "tissue", "id": "GDS1010_1" }, { "dataset_id": "GDS1010", "description": "muscle", "sample_id": [ "GSM26989", "GSM26990", "GSM26991", "GSM26992", "GSM26993", "GSM26994", "GSM26995", "GSM26996", "GSM26997", "GSM26998" ], "type": "tissue", "id": "GDS1010_2" }, { "dataset_id": "GDS1010", "description": "Side Population", "sample_id": [ "GSM26989", "GSM26990", "GSM26991", "GSM26992", "GSM26993", "GSM26999", "GSM27000", "GSM27001", "GSM27002", "GSM27003" ], "type": "cell type", "id": "GDS1010_3" }, { "dataset_id": "GDS1010", "description": "Main Population", "sample_id": [ "GSM26994", "GSM26995", "GSM26996", "GSM26997", "GSM26998", "GSM27004", "GSM27005", "GSM27006", "GSM27007", "GSM27008" ], "type": "cell type", "id": "GDS1010_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1010", "version": 1.0, "instances": "20", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1010.tab", "compression": "gz" } ], [ [ "GDS1011.tab" ], { "title": "Essential hypertension BPH model", "description": "Expression profiling of adrenal glands from blood pressure high (BPH) males at the prehypertensive stage. BPH males examined at 5 weeks of age. Results compared to gene expression in SHR rat model, and provides insight into mechanisms of hypertension shared across species.", "type": "Expression profiling by array", "pubmed_id": [ "15166183", "15882546" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1674", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1011", "description": "BPL/1", "sample_id": [ "GSM28678", "GSM28679", "GSM28680" ], "type": "strain", "id": "GDS1011_1" }, { "dataset_id": "GDS1011", "description": "BPH/2", "sample_id": [ "GSM28675", "GSM28676", "GSM28677" ], "type": "strain", "id": "GDS1011_2" }, { "dataset_id": "GDS1011", "description": "hypotension", "sample_id": [ "GSM28678", "GSM28679", "GSM28680" ], "type": "disease state", "id": "GDS1011_3" }, { "dataset_id": "GDS1011", "description": "hypertension", "sample_id": [ "GSM28675", "GSM28676", "GSM28677" ], "type": "disease state", "id": "GDS1011_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1011", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1011.tab", "compression": "gz" } ], [ [ "GDS1012.tab" ], { "title": "Idiopathic and scleroderma-associated pulmonary fibrosis derived fibroblasts response to TGFbeta", "description": "Analysis of adult lung fibroblasts treated with 4 ng/ml TGFbeta cytokine for 4 hours. Fibroblasts obtained from patients with idiopathic or scleroderma-associated pulmonary fibrosis. Results provide insight into the role of TGFbeta in pulmonary fibrosis.", "type": "Expression profiling by array", "pubmed_id": "15571627", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1724", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1012", "description": "normal", "sample_id": [ "GSM29911", "GSM29913", "GSM29915", "GSM29916", "GSM29918", "GSM29919" ], "type": "disease state", "id": "GDS1012_1" }, { "dataset_id": "GDS1012", "description": "scleroderma-associated pulmonary fibrosis", "sample_id": [ "GSM29923", "GSM29925", "GSM29928", "GSM29931", "GSM29933", "GSM29935" ], "type": "disease state", "id": "GDS1012_2" }, { "dataset_id": "GDS1012", "description": "idiopathic pulmonary fibrosis", "sample_id": [ "GSM29938", "GSM29941", "GSM29944", "GSM29947", "GSM29950", "GSM29952" ], "type": "disease state", "id": "GDS1012_3" }, { "dataset_id": "GDS1012", "description": "control", "sample_id": [ "GSM29911", "GSM29915", "GSM29918", "GSM29923", "GSM29928", "GSM29933", "GSM29938", "GSM29944", "GSM29950" ], "type": "agent", "id": "GDS1012_4" }, { "dataset_id": "GDS1012", "description": "TGFbeta", "sample_id": [ "GSM29913", "GSM29916", "GSM29919", "GSM29925", "GSM29931", "GSM29935", "GSM29941", "GSM29947", "GSM29952" ], "type": "agent", "id": "GDS1012_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1012", "version": 1.0, "instances": "18", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1012.tab", "compression": "gz" } ], [ [ "GDS1013.tab" ], { "title": "IFH1 overexpression: time course", "description": "Analysis of overexpression of essential ribosomal protein activator IFH1. Cells engineered to express IFH1 from a galactose inducible promoter. Expression examined at various time points up to 60 minutes following galactose addition. Results indicate that IFH1 regulates ribosomal protein genes.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1934", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1013", "description": "wild type", "sample_id": [ "GSM34678", "GSM34679", "GSM34680", "GSM34681", "GSM34682", "GSM34683", "GSM34684", "GSM34685", "GSM34686" ], "type": "strain", "id": "GDS1013_1" }, { "dataset_id": "GDS1013", "description": "UASGAL1-IFH1", "sample_id": [ "GSM34687", "GSM34688", "GSM34689", "GSM34690", "GSM34691", "GSM34692", "GSM34693", "GSM34694", "GSM34695", "GSM34696", "GSM34697", "GSM34698", "GSM34699", "GSM34700", "GSM34701" ], "type": "strain", "id": "GDS1013_2" }, { "dataset_id": "GDS1013", "description": "control", "sample_id": [ "GSM34678", "GSM34681", "GSM34684", "GSM34687", "GSM34692", "GSM34697" ], "type": "growth protocol", "id": "GDS1013_3" }, { "dataset_id": "GDS1013", "description": "galactose", "sample_id": [ "GSM34679", "GSM34680", "GSM34682", "GSM34683", "GSM34685", "GSM34686", "GSM34688", "GSM34689", "GSM34690", "GSM34691", "GSM34693", "GSM34694", "GSM34695", "GSM34696", "GSM34698", "GSM34699", "GSM34700", "GSM34701" ], "type": "growth protocol", "id": "GDS1013_4" }, { "dataset_id": "GDS1013", "description": "0 m", "sample_id": [ "GSM34678", "GSM34681", "GSM34684", "GSM34687", "GSM34692", "GSM34697" ], "type": "time", "id": "GDS1013_5" }, { "dataset_id": "GDS1013", "description": "20 m", "sample_id": [ "GSM34688", "GSM34693", "GSM34698" ], "type": "time", "id": "GDS1013_6" }, { "dataset_id": "GDS1013", "description": "30 m", "sample_id": [ "GSM34679", "GSM34682", "GSM34685", "GSM34689", "GSM34694", "GSM34699" ], "type": "time", "id": "GDS1013_7" }, { "dataset_id": "GDS1013", "description": "40 m", "sample_id": [ "GSM34690", "GSM34695", "GSM34700" ], "type": "time", "id": "GDS1013_8" }, { "dataset_id": "GDS1013", "description": "60 m", "sample_id": [ "GSM34680", "GSM34683", "GSM34686", "GSM34691", "GSM34696", "GSM34701" ], "type": "time", "id": "GDS1013_9" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1013", "version": 1.0, "instances": "24", "variables": 7864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1013.tab", "compression": "gz" } ], [ [ "GDS1014.tab" ], { "title": "Serum response factor SRF overexpression in embryonic stem cells", "description": "Expression profiling of embryonic stem (ES) cells overexpressing serum response factor SRF. SRF transiently transfected into ES cells disrupted for both copies of SRF. RNA examined 72 hours after transfection. Results identify potential transcriptional targets of SRF.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE1948", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1014", "description": "wild type", "sample_id": [ "GSM34819", "GSM34820", "GSM34826", "GSM34827", "GSM34834", "GSM34835" ], "type": "genotype/variation", "id": "GDS1014_1" }, { "dataset_id": "GDS1014", "description": "heterozygous Srf mutant", "sample_id": [ "GSM34821", "GSM34822", "GSM34828", "GSM34829", "GSM34836", "GSM34837" ], "type": "genotype/variation", "id": "GDS1014_2" }, { "dataset_id": "GDS1014", "description": "homozygous Srf mutant 81", "sample_id": [ "GSM34823", "GSM34824", "GSM34830", "GSM34831", "GSM34838", "GSM34839" ], "type": "genotype/variation", "id": "GDS1014_3" }, { "dataset_id": "GDS1014", "description": "homozygous Srf mutant 100", "sample_id": [ "GSM34825", "GSM34832", "GSM34833", "GSM34840", "GSM34841" ], "type": "genotype/variation", "id": "GDS1014_4" }, { "dataset_id": "GDS1014", "description": "vector control", "sample_id": [ "GSM34819", "GSM34820", "GSM34821", "GSM34822", "GSM34823", "GSM34824", "GSM34825" ], "type": "agent", "id": "GDS1014_5" }, { "dataset_id": "GDS1014", "description": "non-binding Srf", "sample_id": [ "GSM34826", "GSM34827", "GSM34828", "GSM34829", "GSM34830", "GSM34831", "GSM34832", "GSM34833" ], "type": "agent", "id": "GDS1014_6" }, { "dataset_id": "GDS1014", "description": "constitutive Srf", "sample_id": [ "GSM34834", "GSM34835", "GSM34836", "GSM34837", "GSM34838", "GSM34839", "GSM34840", "GSM34841" ], "type": "agent", "id": "GDS1014_7" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS1014", "version": 1.0, "instances": "23", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1014.tab", "compression": "gz" } ], [ [ "GDS1015.tab" ], { "title": "Serum response factor SRF induction in embryonic stem cells: time course", "description": "Expression profiling of embryonic stem (ES) cells following stimulation with fetal bovine serum at various time points up to 180 minutes. Expression in wild type ES cells compared to that in Srf homozygous mutants with or without an SRF transgene. Results identify potential targets of SRF.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1949", "order": "ordered", "update_date": "Apr 29 2015", "subsets": [ { "dataset_id": "GDS1015", "description": "wild type", "sample_id": [ "GSM34842", "GSM34843", "GSM34844", "GSM34845", "GSM34846" ], "type": "genotype/variation", "id": "GDS1015_1" }, { "dataset_id": "GDS1015", "description": "homozygous Srf mutant", "sample_id": [ "GSM34847", "GSM34848", "GSM34849", "GSM34850", "GSM34851", "GSM34852", "GSM34853", "GSM34854", "GSM34856", "GSM34857" ], "type": "genotype/variation", "id": "GDS1015_2" }, { "dataset_id": "GDS1015", "description": "no transgene", "sample_id": [ "GSM34842", "GSM34843", "GSM34844", "GSM34845", "GSM34846", "GSM34847", "GSM34848", "GSM34849", "GSM34850", "GSM34851" ], "type": "protocol", "id": "GDS1015_3" }, { "dataset_id": "GDS1015", "description": "human SRF transgene", "sample_id": [ "GSM34852", "GSM34853", "GSM34854", "GSM34856", "GSM34857" ], "type": "protocol", "id": "GDS1015_4" }, { "dataset_id": "GDS1015", "description": "0 m", "sample_id": [ "GSM34842", "GSM34847", "GSM34852" ], "type": "time", "id": "GDS1015_5" }, { "dataset_id": "GDS1015", "description": "10 m", "sample_id": [ "GSM34843", "GSM34848", "GSM34853" ], "type": "time", "id": "GDS1015_6" }, { "dataset_id": "GDS1015", "description": "30 m", "sample_id": [ "GSM34844", "GSM34849", "GSM34854" ], "type": "time", "id": "GDS1015_7" }, { "dataset_id": "GDS1015", "description": "60 m", "sample_id": [ "GSM34845", "GSM34850", "GSM34856" ], "type": "time", "id": "GDS1015_8" }, { "dataset_id": "GDS1015", "description": "180 m", "sample_id": [ "GSM34846", "GSM34851", "GSM34857" ], "type": "time", "id": "GDS1015_9" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS1015", "version": 1.0, "instances": "15", "variables": 10256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1015.tab", "compression": "gz" } ], [ [ "GDS1017.tab" ], { "title": "Hypoxic-ischemic injury response to erythropoietin pretreatment", "description": "Analysis of 7 day old forebrains pretreated with erythropoietin (EPO) and then subjected to hypoxic-ischemic injury (HI). HI induced by ligation of the common carotid artery and confinement in hypoxic chambers for 50 minutes. Results provide insight into the neuroprotective effect of EPO.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1999", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1017", "description": "control", "sample_id": [ "GSM35884", "GSM35885", "GSM35886", "GSM35887", "GSM35888" ], "type": "shock", "id": "GDS1017_1" }, { "dataset_id": "GDS1017", "description": "hypoxic-ischemic injury", "sample_id": [ "GSM35889", "GSM35890", "GSM35891", "GSM35892", "GSM35893", "GSM35894", "GSM35895", "GSM35896", "GSM35897", "GSM35898" ], "type": "shock", "id": "GDS1017_2" }, { "dataset_id": "GDS1017", "description": "control", "sample_id": [ "GSM35884", "GSM35885", "GSM35886", "GSM35887", "GSM35888", "GSM35889", "GSM35890", "GSM35891", "GSM35892", "GSM35893" ], "type": "agent", "id": "GDS1017_3" }, { "dataset_id": "GDS1017", "description": "erythropoietin", "sample_id": [ "GSM35894", "GSM35895", "GSM35896", "GSM35897", "GSM35898" ], "type": "agent", "id": "GDS1017_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1017", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1017.tab", "compression": "gz" } ], [ [ "GDS1018.tab" ], { "title": "Brain hippocampal neurons response to brief preconditioning seizures", "description": "Expression profiling of brain hippocampal CA1 and CA3 neurons of Sprague Dawleys subjected to brief preconditioning seizures. Dentate gyrus granule cells also examined. CA1 and CA3 neurons subjected to preconditioning seizures are less vulnerable to subsequent prolonged seizures.", "type": "Expression profiling by array", "pubmed_id": "17239605", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "count", "reference_series": "GSE1994", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1018", "description": "control", "sample_id": [ "GSM35799", "GSM35800", "GSM35801", "GSM35802", "GSM35803", "GSM35804", "GSM35805", "GSM35806", "GSM35807", "GSM35808", "GSM35809", "GSM35810", "GSM35811", "GSM35812", "GSM35813", "GSM35814", "GSM35815", "GSM35816", "GSM35817", "GSM35832", "GSM35833", "GSM35834", "GSM35843", "GSM35844", "GSM35845" ], "type": "protocol", "id": "GDS1018_1" }, { "dataset_id": "GDS1018", "description": "preconditioning seizure", "sample_id": [ "GSM35818", "GSM35819", "GSM35820", "GSM35821", "GSM35822", "GSM35823", "GSM35824", "GSM35825", "GSM35826", "GSM35827", "GSM35828", "GSM35829", "GSM35830", "GSM35831", "GSM35835", "GSM35836", "GSM35837", "GSM35838", "GSM35839", "GSM35842", "GSM35846", "GSM35847" ], "type": "protocol", "id": "GDS1018_2" }, { "dataset_id": "GDS1018", "description": "CA1 pyramidal neuron", "sample_id": [ "GSM35799", "GSM35802", "GSM35803", "GSM35806", "GSM35809", "GSM35812", "GSM35815", "GSM35818", "GSM35821", "GSM35824", "GSM35827", "GSM35830", "GSM35832", "GSM35835", "GSM35838", "GSM35843", "GSM35846" ], "type": "cell type", "id": "GDS1018_3" }, { "dataset_id": "GDS1018", "description": "CA3 pyramidal neuron", "sample_id": [ "GSM35800", "GSM35804", "GSM35807", "GSM35810", "GSM35813", "GSM35816", "GSM35819", "GSM35822", "GSM35825", "GSM35828", "GSM35833", "GSM35837", "GSM35839", "GSM35842", "GSM35844" ], "type": "cell type", "id": "GDS1018_4" }, { "dataset_id": "GDS1018", "description": "dentate gyrus granule cell", "sample_id": [ "GSM35801", "GSM35805", "GSM35808", "GSM35811", "GSM35814", "GSM35817", "GSM35820", "GSM35823", "GSM35826", "GSM35829", "GSM35831", "GSM35834", "GSM35836", "GSM35845", "GSM35847" ], "type": "cell type", "id": "GDS1018_5" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1018", "version": 1.0, "instances": "47", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1018.tab", "compression": "gz" } ], [ [ "GDS1019.tab" ], { "title": "Skeletal muscle response to voluntary running: time course", "description": "Analysis of plantaris muscle following a bout of voluntary running for 12 hours. Gene expression examined at various time points up to 24 hours following cessation of running. Results provide insight into molecular events occuring during the early phase of adaptation to endurance training.", "type": "Expression profiling by array", "pubmed_id": "16081620", "platform": "GPL254", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "16281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE2001", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1019", "description": "3 h running", "sample_id": [ "GSM35400" ], "type": "protocol", "id": "GDS1019_1" }, { "dataset_id": "GDS1019", "description": "12 h running", "sample_id": [ "GSM35397", "GSM35398", "GSM35399", "GSM35401", "GSM35402" ], "type": "protocol", "id": "GDS1019_2" }, { "dataset_id": "GDS1019", "description": "4 wks running", "sample_id": [ "GSM35396" ], "type": "protocol", "id": "GDS1019_3" }, { "dataset_id": "GDS1019", "description": "0 h", "sample_id": [ "GSM35399", "GSM35396", "GSM35400" ], "type": "time", "id": "GDS1019_4" }, { "dataset_id": "GDS1019", "description": "3 h", "sample_id": [ "GSM35401" ], "type": "time", "id": "GDS1019_5" }, { "dataset_id": "GDS1019", "description": "6 h", "sample_id": [ "GSM35402" ], "type": "time", "id": "GDS1019_6" }, { "dataset_id": "GDS1019", "description": "12 h", "sample_id": [ "GSM35398" ], "type": "time", "id": "GDS1019_7" }, { "dataset_id": "GDS1019", "description": "24 h", "sample_id": [ "GSM35397" ], "type": "time", "id": "GDS1019_8" } ], "taxid": "10090", "genes": 12611, "aggregation_function": "mean", "name": "GDS1019", "version": 1.0, "instances": "7", "variables": 12614, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1019.tab", "compression": "gz" } ], [ [ "GDS1020.tab" ], { "title": "Post-traumatic stress disorder development", "description": "Expression profiling of peripheral mononuclear blood cells (PMBC) from patients with post-traumatic stress disorder. PMBC samples obtained from patients a few hours and 4 months after exposure to psychological stress.", "type": "Expression profiling by array", "pubmed_id": "15685253", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE860", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1020", "description": "control", "sample_id": [ "GSM12956", "GSM13135", "GSM13136", "GSM13137", "GSM13145", "GSM13146", "GSM13147", "GSM13148", "GSM13149", "GSM13150", "GSM13151", "GSM13152", "GSM13153", "GSM13154", "GSM13155", "GSM13156" ], "type": "disease state", "id": "GDS1020_1" }, { "dataset_id": "GDS1020", "description": "post-traumatic stress disorder", "sample_id": [ "GSM12955", "GSM12957", "GSM13120", "GSM13121", "GSM13122", "GSM13123", "GSM13124", "GSM13125", "GSM13126", "GSM13127", "GSM13128", "GSM13129", "GSM13130", "GSM13131", "GSM13132", "GSM13133", "GSM13134" ], "type": "disease state", "id": "GDS1020_2" }, { "dataset_id": "GDS1020", "description": "few hours", "sample_id": [ "GSM12956", "GSM13121", "GSM13123", "GSM13125", "GSM13126", "GSM13128", "GSM13129", "GSM13132", "GSM13134", "GSM13135", "GSM13145", "GSM13147", "GSM13149", "GSM13150", "GSM13155" ], "type": "time", "id": "GDS1020_3" }, { "dataset_id": "GDS1020", "description": "4 months", "sample_id": [ "GSM12955", "GSM12957", "GSM13120", "GSM13122", "GSM13124", "GSM13127", "GSM13130", "GSM13131", "GSM13133", "GSM13136", "GSM13137", "GSM13146", "GSM13148", "GSM13151", "GSM13152", "GSM13153", "GSM13154", "GSM13156" ], "type": "time", "id": "GDS1020_4" }, { "dataset_id": "GDS1020", "description": "unknown", "sample_id": [ "GSM12956", "GSM12957", "GSM13120", "GSM13125", "GSM13131", "GSM13132", "GSM13133", "GSM13146", "GSM13147", "GSM13148", "GSM13149", "GSM13155", "GSM13156" ], "type": "other", "id": "GDS1020_5" }, { "dataset_id": "GDS1020", "description": "decrease in symptoms", "sample_id": [ "GSM13135", "GSM13136", "GSM13137", "GSM13145", "GSM13150", "GSM13151", "GSM13153", "GSM13154" ], "type": "other", "id": "GDS1020_6" }, { "dataset_id": "GDS1020", "description": "no decrease in symptoms", "sample_id": [ "GSM12955", "GSM13121", "GSM13122", "GSM13123", "GSM13124", "GSM13126", "GSM13127", "GSM13128", "GSM13129", "GSM13130", "GSM13134", "GSM13152" ], "type": "other", "id": "GDS1020_7" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS1020", "version": 1.0, "instances": "33", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1020.tab", "compression": "gz" } ], [ [ "GDS1022.tab" ], { "title": "Lung pneumocyte response to Pseudomonas aeruginosa type III secretion system mutants", "description": "Analysis of A549 lung pneumocytes after infection with Pseudomonas aeruginosa (PA) PAK mutants deleted for various components of the type III secretion system (TTSS). Mutants in TTSS effectors and translocators studied. PA causes serious respiratory infections in cystic fibrosis patients.", "type": "Expression profiling by array", "pubmed_id": "16207250", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1469", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1022", "description": "uninfected", "sample_id": [ "GSM24740", "GSM24741", "GSM24742" ], "type": "infection", "id": "GDS1022_1" }, { "dataset_id": "GDS1022", "description": "Pseudomonas aeruginosa PAK", "sample_id": [ "GSM24743", "GSM24744", "GSM24745", "GSM24784", "GSM24785", "GSM24786", "GSM24787", "GSM24788", "GSM24789", "GSM24790", "GSM24791", "GSM24792", "GSM24793" ], "type": "infection", "id": "GDS1022_2" }, { "dataset_id": "GDS1022", "description": "wild type", "sample_id": [ "GSM24743", "GSM24744", "GSM24745" ], "type": "genotype/variation", "id": "GDS1022_3" }, { "dataset_id": "GDS1022", "description": "exoS, exoT, exoY deleted", "sample_id": [ "GSM24784", "GSM24785" ], "type": "genotype/variation", "id": "GDS1022_4" }, { "dataset_id": "GDS1022", "description": "exoS, exoT deleted", "sample_id": [ "GSM24786", "GSM24787" ], "type": "genotype/variation", "id": "GDS1022_5" }, { "dataset_id": "GDS1022", "description": "exoS, exoY deleted", "sample_id": [ "GSM24788", "GSM24789" ], "type": "genotype/variation", "id": "GDS1022_6" }, { "dataset_id": "GDS1022", "description": "exoT, exoY deleted", "sample_id": [ "GSM24790", "GSM24791" ], "type": "genotype/variation", "id": "GDS1022_7" }, { "dataset_id": "GDS1022", "description": "needle complex deleted", "sample_id": [ "GSM24792", "GSM24793" ], "type": "genotype/variation", "id": "GDS1022_8" }, { "dataset_id": "GDS1022", "description": "control", "sample_id": [ "GSM24740", "GSM24741", "GSM24742" ], "type": "genotype/variation", "id": "GDS1022_9" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1022", "version": 1.0, "instances": "16", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1022.tab", "compression": "gz" } ], [ [ "GDS1027.tab" ], { "title": "Sulfur mustard effect on lungs: dose response and time course", "description": "Analysis of lungs from Sprague Dawley males following injection with 1, 3, or 6 mg/kg of sulfur mustard (SM) bis-(2-chloroethyl) sulfide, a carcinogenic alkylating agent. Lungs examined at various time points up to 24 hours postinjection. Results provide insight into SM-induced lung injury.", "type": "Expression profiling by array", "pubmed_id": [ "15651846", "16601082" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "154", "value_type": "count", "reference_series": "GSE1888", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1027", "description": "0 mg/kg sulfur mustard", "sample_id": [ "GSM33285", "GSM33286", "GSM33287", "GSM33288", "GSM33293", "GSM33294", "GSM33295", "GSM33296", "GSM33303", "GSM33304", "GSM33305", "GSM33306", "GSM33319", "GSM33320", "GSM33321", "GSM33322", "GSM33329", "GSM33330", "GSM33331", "GSM33332", "GSM33339", "GSM33340", "GSM33341", "GSM33342", "GSM33347", "GSM33348", "GSM33350", "GSM33351", "GSM33358", "GSM33359", "GSM33366", "GSM33367", "GSM33368", "GSM33369", "GSM33372", "GSM33373", "GSM33374", "GSM33375", "GSM33376", "GSM33377", "GSM33384", "GSM33385", "GSM33386", "GSM33387", "GSM33392", "GSM33393", "GSM33400", "GSM33401", "GSM33406", "GSM33407", "GSM33414", "GSM33415", "GSM33416", "GSM33417", "GSM33424", "GSM33425", "GSM33432", "GSM33433", "GSM33438", "GSM33439" ], "type": "dose", "id": "GDS1027_1" }, { "dataset_id": "GDS1027", "description": "1 mg/kg suflur mustard", "sample_id": [ "GSM33289", "GSM33290", "GSM33297", "GSM33298", "GSM33307", "GSM33308", "GSM33313", "GSM33314", "GSM33323", "GSM33324", "GSM33333", "GSM33334", "GSM33345", "GSM33346", "GSM33356", "GSM33357", "GSM33360", "GSM33361", "GSM33378", "GSM33379", "GSM33388", "GSM33389", "GSM33404", "GSM33405", "GSM33408", "GSM33409", "GSM33418", "GSM33419", "GSM33426", "GSM33427" ], "type": "dose", "id": "GDS1027_2" }, { "dataset_id": "GDS1027", "description": "3 mg/kg sulfur mustard", "sample_id": [ "GSM33299", "GSM33300", "GSM33309", "GSM33310", "GSM33315", "GSM33316", "GSM33325", "GSM33326", "GSM33335", "GSM33336", "GSM33352", "GSM33353", "GSM33362", "GSM33363", "GSM33370", "GSM33371", "GSM33380", "GSM33381", "GSM33390", "GSM33391", "GSM33396", "GSM33397", "GSM33410", "GSM33411", "GSM33420", "GSM33421", "GSM33428", "GSM33429", "GSM33434", "GSM33435" ], "type": "dose", "id": "GDS1027_3" }, { "dataset_id": "GDS1027", "description": "6 mg/kg sulfur mustard", "sample_id": [ "GSM33291", "GSM33292", "GSM33301", "GSM33302", "GSM33311", "GSM33312", "GSM33317", "GSM33318", "GSM33327", "GSM33328", "GSM33337", "GSM33338", "GSM33343", "GSM33344", "GSM33354", "GSM33355", "GSM33364", "GSM33365", "GSM33382", "GSM33383", "GSM33394", "GSM33395", "GSM33398", "GSM33399", "GSM33402", "GSM33403", "GSM33412", "GSM33413", "GSM33422", "GSM33423", "GSM33430", "GSM33431", "GSM33436", "GSM33437" ], "type": "dose", "id": "GDS1027_4" }, { "dataset_id": "GDS1027", "description": "0.5 h", "sample_id": [ "GSM33406", "GSM33407", "GSM33408", "GSM33409", "GSM33410", "GSM33411", "GSM33412", "GSM33413", "GSM33414", "GSM33415", "GSM33416", "GSM33417", "GSM33418", "GSM33419", "GSM33420", "GSM33421", "GSM33422", "GSM33423", "GSM33424", "GSM33425", "GSM33426", "GSM33427", "GSM33428", "GSM33429", "GSM33430", "GSM33431", "GSM33432", "GSM33433", "GSM33436", "GSM33437", "GSM33438", "GSM33439" ], "type": "time", "id": "GDS1027_5" }, { "dataset_id": "GDS1027", "description": "1 h", "sample_id": [ "GSM33374", "GSM33375", "GSM33376", "GSM33377", "GSM33378", "GSM33379", "GSM33380", "GSM33381", "GSM33382", "GSM33383", "GSM33384", "GSM33385", "GSM33386", "GSM33387", "GSM33388", "GSM33389", "GSM33390", "GSM33391", "GSM33392", "GSM33393", "GSM33394", "GSM33395", "GSM33396", "GSM33397", "GSM33398", "GSM33399", "GSM33400", "GSM33401", "GSM33402", "GSM33403", "GSM33404", "GSM33405" ], "type": "time", "id": "GDS1027_6" }, { "dataset_id": "GDS1027", "description": "3 h", "sample_id": [ "GSM33317", "GSM33318", "GSM33345", "GSM33346", "GSM33347", "GSM33348", "GSM33350", "GSM33351", "GSM33352", "GSM33353", "GSM33354", "GSM33355", "GSM33356", "GSM33357", "GSM33358", "GSM33359", "GSM33360", "GSM33361", "GSM33362", "GSM33363", "GSM33364", "GSM33365", "GSM33366", "GSM33367", "GSM33368", "GSM33369", "GSM33370", "GSM33371", "GSM33372", "GSM33373" ], "type": "time", "id": "GDS1027_7" }, { "dataset_id": "GDS1027", "description": "6 h", "sample_id": [ "GSM33313", "GSM33314", "GSM33315", "GSM33316", "GSM33319", "GSM33320", "GSM33321", "GSM33322", "GSM33323", "GSM33324", "GSM33325", "GSM33326", "GSM33327", "GSM33328", "GSM33329", "GSM33330", "GSM33331", "GSM33332", "GSM33333", "GSM33334", "GSM33335", "GSM33336", "GSM33337", "GSM33338", "GSM33339", "GSM33340", "GSM33341", "GSM33342", "GSM33343", "GSM33344" ], "type": "time", "id": "GDS1027_8" }, { "dataset_id": "GDS1027", "description": "24 h", "sample_id": [ "GSM33285", "GSM33286", "GSM33287", "GSM33288", "GSM33289", "GSM33290", "GSM33291", "GSM33292", "GSM33293", "GSM33294", "GSM33295", "GSM33296", "GSM33297", "GSM33298", "GSM33299", "GSM33300", "GSM33301", "GSM33302", "GSM33303", "GSM33304", "GSM33305", "GSM33306", "GSM33307", "GSM33308", "GSM33309", "GSM33310", "GSM33311", "GSM33312", "GSM33434", "GSM33435" ], "type": "time", "id": "GDS1027_9" }, { "dataset_id": "GDS1027", "description": "saline vehicle", "sample_id": [ "GSM33285", "GSM33286", "GSM33293", "GSM33294", "GSM33303", "GSM33304", "GSM33319", "GSM33320", "GSM33329", "GSM33330", "GSM33339", "GSM33340", "GSM33347", "GSM33348", "GSM33366", "GSM33367", "GSM33372", "GSM33373", "GSM33374", "GSM33375", "GSM33384", "GSM33385", "GSM33392", "GSM33393", "GSM33414", "GSM33415", "GSM33424", "GSM33425", "GSM33438", "GSM33439" ], "type": "protocol", "id": "GDS1027_10" }, { "dataset_id": "GDS1027", "description": "alcohol vehicle", "sample_id": [ "GSM33287", "GSM33288", "GSM33289", "GSM33290", "GSM33291", "GSM33292", "GSM33295", "GSM33296", "GSM33297", "GSM33298", "GSM33299", "GSM33300", "GSM33301", "GSM33302", "GSM33305", "GSM33306", "GSM33307", "GSM33308", "GSM33309", "GSM33310", "GSM33311", "GSM33312", "GSM33313", "GSM33314", "GSM33315", "GSM33316", "GSM33317", "GSM33318", "GSM33321", "GSM33322", "GSM33323", "GSM33324", "GSM33325", "GSM33326", "GSM33327", "GSM33328", "GSM33331", "GSM33332", "GSM33333", "GSM33334", "GSM33335", "GSM33336", "GSM33337", "GSM33338", "GSM33341", "GSM33342", "GSM33343", "GSM33344", "GSM33345", "GSM33346", "GSM33350", "GSM33351", "GSM33352", "GSM33353", "GSM33354", "GSM33355", "GSM33356", "GSM33357", "GSM33358", "GSM33359", "GSM33360", "GSM33361", "GSM33362", "GSM33363", "GSM33364", "GSM33365", "GSM33368", "GSM33369", "GSM33370", "GSM33371", "GSM33376", "GSM33377", "GSM33378", "GSM33379", "GSM33380", "GSM33381", "GSM33382", "GSM33383", "GSM33386", "GSM33387", "GSM33388", "GSM33389", "GSM33390", "GSM33391", "GSM33394", "GSM33395", "GSM33396", "GSM33397", "GSM33398", "GSM33399", "GSM33400", "GSM33401", "GSM33402", "GSM33403", "GSM33404", "GSM33405", "GSM33406", "GSM33407", "GSM33408", "GSM33409", "GSM33410", "GSM33411", "GSM33412", "GSM33413", "GSM33416", "GSM33417", "GSM33418", "GSM33419", "GSM33420", "GSM33421", "GSM33422", "GSM33423", "GSM33426", "GSM33427", "GSM33428", "GSM33429", "GSM33430", "GSM33431", "GSM33432", "GSM33433", "GSM33434", "GSM33435", "GSM33436", "GSM33437" ], "type": "protocol", "id": "GDS1027_11" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1027", "version": 1.0, "instances": "154", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1027.tab", "compression": "gz" } ], [ [ "GDS1028.tab" ], { "title": "Severe acute respiratory syndrome expression profile", "description": "Expression profiling of peripheral blood mononuclear cells (PBMC) from 10 adult patients with severe acute respiratory syndrome (SARS). Results provide insight into the host immune response to the SARS coronavirus.", "type": "Expression profiling by array", "pubmed_id": "15655079", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1739", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1028", "description": "control", "sample_id": [ "GSM30361", "GSM30362", "GSM30363", "GSM30364" ], "type": "disease state", "id": "GDS1028_1" }, { "dataset_id": "GDS1028", "description": "SARS", "sample_id": [ "GSM30365", "GSM30366", "GSM30367", "GSM30368", "GSM30369", "GSM30370", "GSM30371", "GSM30372", "GSM30373", "GSM30374" ], "type": "disease state", "id": "GDS1028_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1028", "version": 1.0, "instances": "14", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1028.tab", "compression": "gz" } ], [ [ "GDS1030.tab" ], { "title": "IL-21 and IL-15 synergistic effect on na\u00efve CD8+ T cells", "description": "Expression profiling of na\u00efve CD8+ T cells stimulated with IL-15 or IL-21 or both cytokines for 4 hours. 100 ng/ml of each cytokine used. Results provide insight into the synergistic effect of IL-21 and IL-15 on T cell homeostasis and effector functions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2059", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1030", "description": "control", "sample_id": [ "GSM35848", "GSM37078", "GSM37079", "GSM37080", "GSM37081" ], "type": "agent", "id": "GDS1030_1" }, { "dataset_id": "GDS1030", "description": "IL-15", "sample_id": [ "GSM37117", "GSM37118", "GSM37119", "GSM37120", "GSM37121" ], "type": "agent", "id": "GDS1030_2" }, { "dataset_id": "GDS1030", "description": "IL-21", "sample_id": [ "GSM37122", "GSM37123", "GSM37124", "GSM37125", "GSM37126" ], "type": "agent", "id": "GDS1030_3" }, { "dataset_id": "GDS1030", "description": "IL-15 and IL-21", "sample_id": [ "GSM37128", "GSM37163", "GSM37164", "GSM37165", "GSM37166" ], "type": "agent", "id": "GDS1030_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1030", "version": 1.0, "instances": "20", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1030.tab", "compression": "gz" } ], [ [ "GDS1032.tab" ], { "title": "Coxsackievirus B3 infection effect on hearts: time course", "description": "Expression profiling of hearts from 4 to 5 week old A/J males after infection with coxsackievirus B3 (CVB3). Hearts examined at various time points up to 30 days postinfection. CVB3 infection leads to cardiac inflammation and fibrosis within 9 days of infection.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1457", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1032", "description": "0 d", "sample_id": [ "GSM24473" ], "type": "time", "id": "GDS1032_1" }, { "dataset_id": "GDS1032", "description": "3 d", "sample_id": [ "GSM24474", "GSM24475" ], "type": "time", "id": "GDS1032_2" }, { "dataset_id": "GDS1032", "description": "9 d", "sample_id": [ "GSM24476", "GSM24477" ], "type": "time", "id": "GDS1032_3" }, { "dataset_id": "GDS1032", "description": "30 d", "sample_id": [ "GSM24478" ], "type": "time", "id": "GDS1032_4" }, { "dataset_id": "GDS1032", "description": "none", "sample_id": [ "GSM24473" ], "type": "agent", "id": "GDS1032_5" }, { "dataset_id": "GDS1032", "description": "PBS control", "sample_id": [ "GSM24474", "GSM24476" ], "type": "agent", "id": "GDS1032_6" }, { "dataset_id": "GDS1032", "description": "CVB3", "sample_id": [ "GSM24475", "GSM24477", "GSM24478" ], "type": "agent", "id": "GDS1032_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1032", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1032.tab", "compression": "gz" } ], [ [ "GDS1033.tab" ], { "title": "fhl1 and ifh1 deletion mutants", "description": "Expression profiling of fhl1 single deletion mutant and ifh1 fhl1 double deletion mutant. Mutants generated from W303 strain. Results indicate that Ifh1p and Fhl1p function together to regulate the transcription of ribosomal protein genes.", "type": "Expression profiling by array", "pubmed_id": "15692568", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE2096", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1033", "description": "wild type", "sample_id": [ "GSM37903", "GSM37904" ], "type": "genotype/variation", "id": "GDS1033_1" }, { "dataset_id": "GDS1033", "description": "fhl1 deletion", "sample_id": [ "GSM37905", "GSM37906" ], "type": "genotype/variation", "id": "GDS1033_2" }, { "dataset_id": "GDS1033", "description": "fhl1 ifh1 double deletion", "sample_id": [ "GSM37907", "GSM37908" ], "type": "genotype/variation", "id": "GDS1033_3" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1033", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1033.tab", "compression": "gz" } ], [ [ "GDS1036.tab" ], { "title": "Microglial cell response to interferon-gamma: time course", "description": "Expression profiling of microglial cells obtained from 4 different samples following treatment with 200 u/ml interferon-gamma (IFN-gamma). Cells examined 1, 6, and 4 hours after treatment. Results provide insight into the regulation of immune functions in microglia by IFN-gamma.", "type": "Expression profiling by array", "pubmed_id": "16163375", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1432", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1036", "description": "untreated", "sample_id": [ "GSM26925", "GSM26926", "GSM26927", "GSM26928", "GSM26929", "GSM26930", "GSM26931", "GSM26932", "GSM26933", "GSM26934", "GSM26936", "GSM26937" ], "type": "agent", "id": "GDS1036_1" }, { "dataset_id": "GDS1036", "description": "IFN-gamma", "sample_id": [ "GSM23887", "GSM23893", "GSM23895", "GSM23899", "GSM23903", "GSM23904", "GSM23908", "GSM23912", "GSM23916", "GSM23919", "GSM23921", "GSM23922" ], "type": "agent", "id": "GDS1036_2" }, { "dataset_id": "GDS1036", "description": "1 h", "sample_id": [ "GSM23887", "GSM23893", "GSM23895", "GSM23899", "GSM26925", "GSM26926", "GSM26927", "GSM26928" ], "type": "time", "id": "GDS1036_3" }, { "dataset_id": "GDS1036", "description": "6 h", "sample_id": [ "GSM23903", "GSM23904", "GSM23908", "GSM23912", "GSM26929", "GSM26930", "GSM26931", "GSM26932" ], "type": "time", "id": "GDS1036_4" }, { "dataset_id": "GDS1036", "description": "24 h", "sample_id": [ "GSM23916", "GSM23919", "GSM23921", "GSM23922", "GSM26933", "GSM26934", "GSM26936", "GSM26937" ], "type": "time", "id": "GDS1036_5" }, { "dataset_id": "GDS1036", "description": "B18", "sample_id": [ "GSM23887", "GSM23903", "GSM23916", "GSM26926", "GSM26929", "GSM26933" ], "type": "specimen", "id": "GDS1036_6" }, { "dataset_id": "GDS1036", "description": "O", "sample_id": [ "GSM23893", "GSM23904", "GSM23919", "GSM26925", "GSM26930", "GSM26934" ], "type": "specimen", "id": "GDS1036_7" }, { "dataset_id": "GDS1036", "description": "W", "sample_id": [ "GSM23895", "GSM23908", "GSM23921", "GSM26927", "GSM26931", "GSM26936" ], "type": "specimen", "id": "GDS1036_8" }, { "dataset_id": "GDS1036", "description": "Y20", "sample_id": [ "GSM23899", "GSM23912", "GSM23922", "GSM26928", "GSM26932", "GSM26937" ], "type": "specimen", "id": "GDS1036_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1036", "version": 1.0, "instances": "24", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1036.tab", "compression": "gz" } ], [ [ "GDS1037.tab" ], { "title": "Embryonic lung side population CD45+ and CD45- cell comparison", "description": "Expression profiling of CD45+ and CD45- side population (SP) cells from embryonic 17.5-day lungs. CD45+ and CD45- main population cells also examined. Results provide insight into the role of CD45+ and CD45- SP cells in lung development.", "type": "Expression profiling by array", "pubmed_id": "16076931", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2057", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1037", "description": "CD45- main population", "sample_id": [ "GSM37461", "GSM37462", "GSM37463" ], "type": "cell type", "id": "GDS1037_1" }, { "dataset_id": "GDS1037", "description": "CD45+ main population", "sample_id": [ "GSM37464", "GSM37465", "GSM37466" ], "type": "cell type", "id": "GDS1037_2" }, { "dataset_id": "GDS1037", "description": "CD45- side population", "sample_id": [ "GSM37467", "GSM37468", "GSM37469" ], "type": "cell type", "id": "GDS1037_3" }, { "dataset_id": "GDS1037", "description": "CD45+ side population", "sample_id": [ "GSM37470", "GSM37471", "GSM37472", "GSM37473", "GSM37474" ], "type": "cell type", "id": "GDS1037_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1037", "version": 1.0, "instances": "14", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1037.tab", "compression": "gz" } ], [ [ "GDS1038.tab" ], { "title": "Adenylate cyclase activator forskolin effect on pheochromocytoma cell line (RAE230A)", "description": "Expression profiling of PC12 pheochromocytoma cells treated with 10 uM forskolin for 1 hour. Forskolin activates adenylate cyclase. Effect of 1,9 dideoxy forskolin, an inactive analog of forskolin, also examined. Results identify genes whose expression responds to changes in cAMP levels.", "type": "Expression profiling by array", "pubmed_id": "15620361", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE2071", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1038", "description": "inactive forskolin analog", "sample_id": [ "GSM35336", "GSM35337" ], "type": "agent", "id": "GDS1038_1" }, { "dataset_id": "GDS1038", "description": "forskolin", "sample_id": [ "GSM35334", "GSM35335" ], "type": "agent", "id": "GDS1038_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1038", "version": 1.0, "instances": "4", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1038.tab", "compression": "gz" } ], [ [ "GDS1039.tab" ], { "title": "Adenylate cyclase activator forskolin effect on pheochromocytoma cell line (RAE230B)", "description": "Expression profiling of PC12 pheochromocytoma cells treated with 10 uM forskolin for 1 hour. Forskolin activates adenylate cyclase. Effect of 1,9 dideoxy forskolin, an inactive analog of forskolin, also examined. Results identify genes whose expression responds to changes in cAMP levels.", "type": "Expression profiling by array", "pubmed_id": "15620361", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE2071", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1039", "description": "inactive forskolin analog", "sample_id": [ "GSM35255", "GSM35256" ], "type": "agent", "id": "GDS1039_1" }, { "dataset_id": "GDS1039", "description": "forskolin", "sample_id": [ "GSM35253", "GSM35254" ], "type": "agent", "id": "GDS1039_2" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS1039", "version": 1.0, "instances": "4", "variables": 13320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1039.tab", "compression": "gz" } ], [ [ "GDS104.tab" ], { "title": "Sporulation time course", "description": "Temporal analysis of the developmental program of sporulation, which consists of meiosis and spore morphogenesis. Seven distinct temporal patterns of induction are observed. Samples recovered at several time points up to 11 hours.", "type": "Expression profiling by array", "pubmed_id": "9784122", "platform": "GPL67", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6384", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE27", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS104", "description": "0 hour", "sample_id": [ "GSM992" ], "type": "time", "id": "GDS104_1" }, { "dataset_id": "GDS104", "description": "0.5 hour", "sample_id": [ "GSM1000" ], "type": "time", "id": "GDS104_2" }, { "dataset_id": "GDS104", "description": "2 hour", "sample_id": [ "GSM993" ], "type": "time", "id": "GDS104_3" }, { "dataset_id": "GDS104", "description": "5 hour", "sample_id": [ "GSM994" ], "type": "time", "id": "GDS104_4" }, { "dataset_id": "GDS104", "description": "7 hour", "sample_id": [ "GSM995" ], "type": "time", "id": "GDS104_5" }, { "dataset_id": "GDS104", "description": "9 hour", "sample_id": [ "GSM996" ], "type": "time", "id": "GDS104_6" }, { "dataset_id": "GDS104", "description": "11 hour", "sample_id": [ "GSM998" ], "type": "time", "id": "GDS104_7" } ], "taxid": "4932", "genes": 6084, "aggregation_function": "mean", "name": "GDS104", "version": 1.0, "instances": "7", "variables": 6086, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS104.tab", "compression": "gz" } ], [ [ "GDS1043.tab" ], { "title": "Macrophage response to lipopolysaccharide: time course", "description": "Expression profiling of RAW264.7 macrophage cells exposed to 100 ng/ml of lipopolysaccharide (LPS) for 2 and 12 hours. Macrophages secrete proinflammatory cytokines in response to LPS. Results provide insight into trafficking and secretion of cytokines in macrophages.", "type": "Expression profiling by array", "pubmed_id": "15640147", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1459", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1043", "description": "0 h", "sample_id": [ "GSM24479" ], "type": "time", "id": "GDS1043_1" }, { "dataset_id": "GDS1043", "description": "2 h", "sample_id": [ "GSM24480" ], "type": "time", "id": "GDS1043_2" }, { "dataset_id": "GDS1043", "description": "12 h", "sample_id": [ "GSM24481" ], "type": "time", "id": "GDS1043_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1043", "version": 1.0, "instances": "3", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1043.tab", "compression": "gz" } ], [ [ "GDS1044.tab" ], { "title": "Auxin signaling inhibitors effect on seedlings", "description": "Expression profiling of 7 day old Columbia-O seedlings treated for 1 hour with auxin and with either compound A or B. Both compounds identified in a screen for small chemical inhibitors of auxin signaling. Results provide insight into the regulation of the auxin-signaling network.", "type": "Expression profiling by array", "pubmed_id": "15466695", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE1491", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1044", "description": "negative control", "sample_id": [ "GSM25858", "GSM25859", "GSM25860", "GSM25861" ], "type": "agent", "id": "GDS1044_1" }, { "dataset_id": "GDS1044", "description": "auxin", "sample_id": [ "GSM25862", "GSM25863", "GSM25864", "GSM25865" ], "type": "agent", "id": "GDS1044_2" }, { "dataset_id": "GDS1044", "description": "compound A", "sample_id": [ "GSM25866", "GSM25867", "GSM25868", "GSM25869" ], "type": "agent", "id": "GDS1044_3" }, { "dataset_id": "GDS1044", "description": "compound B", "sample_id": [ "GSM25870", "GSM25871", "GSM25872" ], "type": "agent", "id": "GDS1044_4" }, { "dataset_id": "GDS1044", "description": "auxin, compound A", "sample_id": [ "GSM25873", "GSM25874", "GSM25875" ], "type": "agent", "id": "GDS1044_5" }, { "dataset_id": "GDS1044", "description": "auxin, compound B", "sample_id": [ "GSM25876", "GSM25877", "GSM25878" ], "type": "agent", "id": "GDS1044_6" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1044", "version": 1.0, "instances": "21", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1044.tab", "compression": "gz" } ], [ [ "GDS1047.tab" ], { "title": "Vernalization independence vip5 and vip6 mutants", "description": "Expression profiling of 3 week old vernalization independence (VIP) vip5 and vip6 mutants. VIP genes repress flowering by activating the MADSbox gene FLC. Results provide insight into the role of VIP genes in flowering and development.", "type": "Expression profiling by array", "pubmed_id": "15472079", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1516", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1047", "description": "wild type", "sample_id": [ "GSM26281", "GSM26282" ], "type": "genotype/variation", "id": "GDS1047_1" }, { "dataset_id": "GDS1047", "description": "vip5", "sample_id": [ "GSM26283", "GSM26284" ], "type": "genotype/variation", "id": "GDS1047_2" }, { "dataset_id": "GDS1047", "description": "vip6", "sample_id": [ "GSM26285", "GSM26286" ], "type": "genotype/variation", "id": "GDS1047_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1047", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1047.tab", "compression": "gz" } ], [ [ "GDS1048.tab" ], { "title": "Lymphoblastoid cell lines from CEPH/Utah families", "description": "Expression profiling of lymphoblastoid cell lines from 15 CEPH/Utah families. Cell lines from 3 generations examined. Results provide insight into the heritability of gene expression traits in segregating human populations.", "type": "Expression profiling by array", "pubmed_id": "15514893", "platform": "GPL564", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23916", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "167", "value_type": "log ratio", "reference_series": "GSE1726", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1048", "description": "family 1334", "sample_id": [ "GSM30006", "GSM30007", "GSM30008", "GSM30009", "GSM30010", "GSM30011", "GSM30012" ], "type": "specimen", "id": "GDS1048_1" }, { "dataset_id": "GDS1048", "description": "family 1340", "sample_id": [ "GSM30013", "GSM30014", "GSM30015", "GSM30016", "GSM30017", "GSM30018", "GSM30019", "GSM30020", "GSM30021", "GSM30022" ], "type": "specimen", "id": "GDS1048_2" }, { "dataset_id": "GDS1048", "description": "family 1345", "sample_id": [ "GSM30023", "GSM30024", "GSM30025", "GSM30026", "GSM30027", "GSM30028", "GSM30029", "GSM30030", "GSM30031", "GSM30032" ], "type": "specimen", "id": "GDS1048_3" }, { "dataset_id": "GDS1048", "description": "family 1346", "sample_id": [ "GSM30033", "GSM30034", "GSM30035", "GSM30036", "GSM30037", "GSM30038", "GSM30039", "GSM30040", "GSM30041" ], "type": "specimen", "id": "GDS1048_4" }, { "dataset_id": "GDS1048", "description": "family 1349", "sample_id": [ "GSM30042", "GSM30043", "GSM30044", "GSM30045", "GSM30046", "GSM30047", "GSM30048", "GSM30049", "GSM30050", "GSM30051", "GSM30052", "GSM30053" ], "type": "specimen", "id": "GDS1048_5" }, { "dataset_id": "GDS1048", "description": "family 1350", "sample_id": [ "GSM30054", "GSM30055", "GSM30056", "GSM30057", "GSM30058", "GSM30059", "GSM30060", "GSM30061", "GSM30062", "GSM30063" ], "type": "specimen", "id": "GDS1048_6" }, { "dataset_id": "GDS1048", "description": "family 1358", "sample_id": [ "GSM30064", "GSM30065", "GSM30066", "GSM30067", "GSM30068", "GSM30069", "GSM30070", "GSM30071", "GSM30072", "GSM30073", "GSM30074" ], "type": "specimen", "id": "GDS1048_7" }, { "dataset_id": "GDS1048", "description": "family 1362", "sample_id": [ "GSM30075", "GSM30076", "GSM30077", "GSM30078", "GSM30079", "GSM30080", "GSM30081", "GSM30086", "GSM30087", "GSM30088", "GSM30089", "GSM30090", "GSM30091", "GSM30092", "GSM30093", "GSM30094", "GSM30095" ], "type": "specimen", "id": "GDS1048_8" }, { "dataset_id": "GDS1048", "description": "family 1375", "sample_id": [ "GSM30096", "GSM30097", "GSM30098", "GSM30099", "GSM30100", "GSM30101", "GSM30102", "GSM30103", "GSM30104", "GSM30105" ], "type": "specimen", "id": "GDS1048_9" }, { "dataset_id": "GDS1048", "description": "family 1377", "sample_id": [ "GSM30106", "GSM30107", "GSM30108", "GSM30109", "GSM30110", "GSM30111", "GSM30112", "GSM30113", "GSM30114", "GSM30115" ], "type": "specimen", "id": "GDS1048_10" }, { "dataset_id": "GDS1048", "description": "family 1408", "sample_id": [ "GSM30116", "GSM30117", "GSM30118", "GSM30119", "GSM30120", "GSM30121", "GSM30122", "GSM30123", "GSM30177", "GSM30178", "GSM30179", "GSM30180" ], "type": "specimen", "id": "GDS1048_11" }, { "dataset_id": "GDS1048", "description": "family 1418", "sample_id": [ "GSM30181", "GSM30182", "GSM30183", "GSM30184", "GSM30185", "GSM30186", "GSM30187", "GSM30188", "GSM30189", "GSM30190", "GSM30191" ], "type": "specimen", "id": "GDS1048_12" }, { "dataset_id": "GDS1048", "description": "family 1421", "sample_id": [ "GSM30192", "GSM30193", "GSM30194", "GSM30195", "GSM30196", "GSM30197", "GSM30198", "GSM30199", "GSM30200", "GSM30201", "GSM30202", "GSM30203" ], "type": "specimen", "id": "GDS1048_13" }, { "dataset_id": "GDS1048", "description": "family 1424", "sample_id": [ "GSM30204", "GSM30205", "GSM30206", "GSM30207", "GSM30208", "GSM30209", "GSM30210", "GSM30211", "GSM30212", "GSM30213", "GSM30214", "GSM30215", "GSM30216", "GSM30217" ], "type": "specimen", "id": "GDS1048_14" }, { "dataset_id": "GDS1048", "description": "family 1477", "sample_id": [ "GSM30218", "GSM30219", "GSM30220", "GSM30221", "GSM30222", "GSM30223", "GSM30224", "GSM30225", "GSM30226", "GSM30227", "GSM30228", "GSM30229" ], "type": "specimen", "id": "GDS1048_15" } ], "taxid": "9606", "genes": 22217, "aggregation_function": "mean", "name": "GDS1048", "version": 1.0, "instances": "167", "variables": 22219, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1048.tab", "compression": "gz" } ], [ [ "GDS1049.tab" ], { "title": "Terminal heart failure model", "description": "Expression profiling of left ventricles of 7 week old double transgenics overexpressing human angiotensin and renin. Double transgenics exhibiting cardiac hypertrophy compared to those exhibiting terminal heart failure with cachexia. Double transgenics treated with losartan also examined.", "type": "Expression profiling by array", "pubmed_id": "15623567", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1557", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1049", "description": "wild type", "sample_id": [ "GSM26713" ], "type": "genotype/variation", "id": "GDS1049_1" }, { "dataset_id": "GDS1049", "description": "double transgenic", "sample_id": [ "GSM26710", "GSM26711", "GSM26712" ], "type": "genotype/variation", "id": "GDS1049_2" }, { "dataset_id": "GDS1049", "description": "control", "sample_id": [ "GSM26712", "GSM26713" ], "type": "disease state", "id": "GDS1049_3" }, { "dataset_id": "GDS1049", "description": "cardiac hypertrophy", "sample_id": [ "GSM26711" ], "type": "disease state", "id": "GDS1049_4" }, { "dataset_id": "GDS1049", "description": "terminal heart failure", "sample_id": [ "GSM26710" ], "type": "disease state", "id": "GDS1049_5" }, { "dataset_id": "GDS1049", "description": "untreated", "sample_id": [ "GSM26710", "GSM26711", "GSM26713" ], "type": "agent", "id": "GDS1049_6" }, { "dataset_id": "GDS1049", "description": "losartan", "sample_id": [ "GSM26712" ], "type": "agent", "id": "GDS1049_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1049", "version": 1.0, "instances": "4", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1049.tab", "compression": "gz" } ], [ [ "GDS105.tab" ], { "title": "Snf/Swi mutants (v1_2.2)", "description": "Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.", "type": "Expression profiling by array", "pubmed_id": "10725359", "platform": "GPL67", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6384", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE21", "order": "none", "update_date": "Apr 01 2003", "subsets": [ { "dataset_id": "GDS105", "description": "swi1 deletion", "sample_id": [ "GSM1004" ], "type": "strain", "id": "GDS105_1" }, { "dataset_id": "GDS105", "description": "swi2 deletion", "sample_id": [ "GSM1005" ], "type": "strain", "id": "GDS105_2" } ], "taxid": "4932", "genes": 6084, "aggregation_function": "mean", "name": "GDS105", "version": 1.0, "instances": "2", "variables": 6086, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS105.tab", "compression": "gz" } ], [ [ "GDS1050.tab" ], { "title": "Valproic acid effect on theca cells (HG-U133A)", "description": "Analysis of normal theca cells treated with 500 uM valproic acid (VPA), an anti-epilipetic that induces polycystic ovary syndrome (PCOS)-like symptoms. Theca cells from PCOS patients also examined. Results provide insight into the underlying mechanisms contributing to VPA-induced PCOS-like symptoms.", "type": "Expression profiling by array", "pubmed_id": "15598877", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE1615", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1050", "description": "untreated", "sample_id": [ "GSM27531", "GSM27532", "GSM27533", "GSM27534", "GSM27536", "GSM27537", "GSM27538", "GSM27540", "GSM27541" ], "type": "agent", "id": "GDS1050_1" }, { "dataset_id": "GDS1050", "description": "valproic acid", "sample_id": [ "GSM27543", "GSM27546", "GSM27548", "GSM27549" ], "type": "agent", "id": "GDS1050_2" }, { "dataset_id": "GDS1050", "description": "polycystic ovary syndrome", "sample_id": [ "GSM27536", "GSM27537", "GSM27538", "GSM27540", "GSM27541" ], "type": "disease state", "id": "GDS1050_3" }, { "dataset_id": "GDS1050", "description": "normal", "sample_id": [ "GSM27531", "GSM27532", "GSM27533", "GSM27534", "GSM27543", "GSM27546", "GSM27548", "GSM27549" ], "type": "disease state", "id": "GDS1050_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1050", "version": 1.0, "instances": "13", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1050.tab", "compression": "gz" } ], [ [ "GDS1051.tab" ], { "title": "Valproic acid effect on theca cells (HG-U133B)", "description": "Analysis of normal theca cells treated with 500 uM valproic acid (VPA), an anti-epilipetic that induces polycystic ovary syndrome (PCOS)-like symptoms. Theca cells from PCOS patients also examined. Results provide insight into the underlying mechanisms contributing to VPA-induced PCOS-like symptoms.", "type": "Expression profiling by array", "pubmed_id": "15598877", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE1615", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1051", "description": "untreated", "sample_id": [ "GSM29537", "GSM29638", "GSM29643", "GSM29644", "GSM29645", "GSM29646", "GSM29647", "GSM29648", "GSM29649" ], "type": "agent", "id": "GDS1051_1" }, { "dataset_id": "GDS1051", "description": "valproic acid", "sample_id": [ "GSM29650", "GSM29651", "GSM29652", "GSM29653" ], "type": "agent", "id": "GDS1051_2" }, { "dataset_id": "GDS1051", "description": "polycystic ovary syndrome", "sample_id": [ "GSM29645", "GSM29646", "GSM29647", "GSM29648", "GSM29649" ], "type": "disease state", "id": "GDS1051_3" }, { "dataset_id": "GDS1051", "description": "normal", "sample_id": [ "GSM29537", "GSM29638", "GSM29643", "GSM29644", "GSM29650", "GSM29651", "GSM29652", "GSM29653" ], "type": "disease state", "id": "GDS1051_4" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1051", "version": 1.0, "instances": "13", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1051.tab", "compression": "gz" } ], [ [ "GDS1053.tab" ], { "title": "Growth hormone receptor mutants", "description": "Analysis of liver of 42 day old male mutants expressing growth hormone receptor (GHR) proteins truncated at amino acid residues 569 or 391. Receptors truncated at residue 569 have residues 539 and 545 replaced with phenylalanine. Results provide insight into the function of regions of GHR.", "type": "Expression profiling by array", "pubmed_id": "15601831", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE988", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1053", "description": "wild type", "sample_id": [ "GSM15491", "GSM15492", "GSM15493" ], "type": "genotype/variation", "id": "GDS1053_1" }, { "dataset_id": "GDS1053", "description": "GHR -/-", "sample_id": [ "GSM15497", "GSM15498", "GSM15499" ], "type": "genotype/variation", "id": "GDS1053_2" }, { "dataset_id": "GDS1053", "description": "mutant 391", "sample_id": [ "GSM15494", "GSM15495", "GSM15496" ], "type": "genotype/variation", "id": "GDS1053_3" }, { "dataset_id": "GDS1053", "description": "mutant 569", "sample_id": [ "GSM15488", "GSM15489", "GSM15490" ], "type": "genotype/variation", "id": "GDS1053_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1053", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1053.tab", "compression": "gz" } ], [ [ "GDS1054.tab" ], { "title": "Iron deficiency effect on duodenum: time course (RAE230A)", "description": "Analysis of effect of dietary iron deprivation on duodenum. Sprague Dawleys examined at various post-natal ages up to 36 weeks. Results identify iron-responsive genes, which include those involved in intestinal iron transport, during the course of post-natal development.", "type": "Expression profiling by array", "pubmed_id": [ "15637178", "16629162" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1892", "order": "ordered", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1054", "description": "8 d", "sample_id": [ "GSM33513", "GSM33515", "GSM33517", "GSM33519", "GSM33521", "GSM33524" ], "type": "age", "id": "GDS1054_1" }, { "dataset_id": "GDS1054", "description": "21 d", "sample_id": [ "GSM33525", "GSM33526", "GSM33527", "GSM33528", "GSM33529", "GSM33530" ], "type": "age", "id": "GDS1054_2" }, { "dataset_id": "GDS1054", "description": "6 wk", "sample_id": [ "GSM33531", "GSM33532", "GSM33533", "GSM33534", "GSM33535", "GSM33536" ], "type": "age", "id": "GDS1054_3" }, { "dataset_id": "GDS1054", "description": "12 wk", "sample_id": [ "GSM33537", "GSM33538", "GSM33539", "GSM33540", "GSM33541", "GSM33543" ], "type": "age", "id": "GDS1054_4" }, { "dataset_id": "GDS1054", "description": "36 wk", "sample_id": [ "GSM33544", "GSM33545", "GSM33546", "GSM33547", "GSM33548", "GSM33549" ], "type": "age", "id": "GDS1054_5" }, { "dataset_id": "GDS1054", "description": "high iron", "sample_id": [ "GSM33513", "GSM33515", "GSM33517", "GSM33525", "GSM33526", "GSM33527", "GSM33531", "GSM33532", "GSM33533", "GSM33537", "GSM33538", "GSM33539", "GSM33544", "GSM33545", "GSM33546" ], "type": "dose", "id": "GDS1054_6" }, { "dataset_id": "GDS1054", "description": "low iron", "sample_id": [ "GSM33519", "GSM33521", "GSM33524", "GSM33528", "GSM33529", "GSM33530", "GSM33534", "GSM33535", "GSM33536", "GSM33540", "GSM33541", "GSM33543", "GSM33547", "GSM33548", "GSM33549" ], "type": "dose", "id": "GDS1054_7" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1054", "version": 1.0, "instances": "30", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1054.tab", "compression": "gz" } ], [ [ "GDS1055.tab" ], { "title": "Iron deficiency effect on duodenum: time course (RAE230B)", "description": "Analysis of effect of dietary iron deprivation on duodenum. Sprague Dawleys examined at various post-natal ages up to 36 weeks. Results identify iron-responsive genes, which include those involved in intestinal iron transport, during the course of post-natal development.", "type": "Expression profiling by array", "pubmed_id": [ "15637178", "16629162" ], "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1892", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS1055", "description": "8 d", "sample_id": [ "GSM33577", "GSM33578", "GSM33579", "GSM33580", "GSM33581", "GSM33582" ], "type": "age", "id": "GDS1055_1" }, { "dataset_id": "GDS1055", "description": "21 d", "sample_id": [ "GSM33571", "GSM33572", "GSM33573", "GSM33574", "GSM33575", "GSM33576" ], "type": "age", "id": "GDS1055_2" }, { "dataset_id": "GDS1055", "description": "6 wk", "sample_id": [ "GSM33565", "GSM33566", "GSM33567", "GSM33568", "GSM33569", "GSM33570" ], "type": "age", "id": "GDS1055_3" }, { "dataset_id": "GDS1055", "description": "12 wk", "sample_id": [ "GSM33559", "GSM33560", "GSM33561", "GSM33562", "GSM33563", "GSM33564" ], "type": "age", "id": "GDS1055_4" }, { "dataset_id": "GDS1055", "description": "36 wk", "sample_id": [ "GSM33551", "GSM33552", "GSM33553", "GSM33555", "GSM33556", "GSM33557" ], "type": "age", "id": "GDS1055_5" }, { "dataset_id": "GDS1055", "description": "low iron", "sample_id": [ "GSM33555", "GSM33556", "GSM33557", "GSM33562", "GSM33563", "GSM33564", "GSM33568", "GSM33569", "GSM33570", "GSM33574", "GSM33575", "GSM33576", "GSM33580", "GSM33581", "GSM33582" ], "type": "dose", "id": "GDS1055_6" }, { "dataset_id": "GDS1055", "description": "high iron", "sample_id": [ "GSM33551", "GSM33552", "GSM33553", "GSM33559", "GSM33560", "GSM33561", "GSM33565", "GSM33566", "GSM33567", "GSM33571", "GSM33572", "GSM33573", "GSM33577", "GSM33578", "GSM33579" ], "type": "dose", "id": "GDS1055_7" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS1055", "version": 1.0, "instances": "30", "variables": 13321, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1055.tab", "compression": "gz" } ], [ [ "GDS1056.tab" ], { "title": "Type 1 diabetes model response to cyclophosphamide: time course", "description": "Analysis of pancreatic islets from BDC2.5/NOD transgenics after treatment with 200 mg/kg cyclophosphamide (CY) at various time points up to 3 days. CY induces diabetes in BDC2.5/NOD transgenics. Results provide insight into molecular events accompanying the progression from insulitis to diabetes.", "type": "Expression profiling by array", "pubmed_id": "15331540", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2254", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1056", "description": "untreated", "sample_id": [ "GSM41439", "GSM41440", "GSM41441", "GSM41442", "GSM41443", "GSM41444", "GSM41445", "GSM41446" ], "type": "agent", "id": "GDS1056_1" }, { "dataset_id": "GDS1056", "description": "cyclophosphamide", "sample_id": [ "GSM41447", "GSM41448", "GSM41449", "GSM41450", "GSM41451", "GSM41452", "GSM41453", "GSM41454", "GSM41455", "GSM41456" ], "type": "agent", "id": "GDS1056_2" }, { "dataset_id": "GDS1056", "description": "0 d", "sample_id": [ "GSM41439", "GSM41440", "GSM41441", "GSM41442", "GSM41443", "GSM41444", "GSM41445", "GSM41446" ], "type": "time", "id": "GDS1056_3" }, { "dataset_id": "GDS1056", "description": "1 d", "sample_id": [ "GSM41447", "GSM41448", "GSM41449", "GSM41450" ], "type": "time", "id": "GDS1056_4" }, { "dataset_id": "GDS1056", "description": "2 d", "sample_id": [ "GSM41451", "GSM41452", "GSM41453" ], "type": "time", "id": "GDS1056_5" }, { "dataset_id": "GDS1056", "description": "3 d", "sample_id": [ "GSM41454", "GSM41455", "GSM41456" ], "type": "time", "id": "GDS1056_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1056", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1056.tab", "compression": "gz" } ], [ [ "GDS1057.tab" ], { "title": "Structural bone autograft and allograft comparison", "description": "Expression profiling of autografted and allografted femurs of 8 week old C57BL/6 animals. Allografts obtained from ICR animals and grafted onto C57BL/6 femurs. Bone remodeling and vascularization in autografts is superior to that in allografts. Results identify genes important in autograft healing.", "type": "Expression profiling by array", "pubmed_id": "15711561", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE2249", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1057", "description": "allograft", "sample_id": [ "GSM37204" ], "type": "protocol", "id": "GDS1057_1" }, { "dataset_id": "GDS1057", "description": "autograft", "sample_id": [ "GSM37205" ], "type": "protocol", "id": "GDS1057_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1057", "version": 1.0, "instances": "2", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1057.tab", "compression": "gz" } ], [ [ "GDS1058.tab" ], { "title": "Uterus response to 17beta-estradiol: time course", "description": "Analysis of uteri of immature 19 to 20 day old Alpk:APfCD-1 females given a single injection of 400 ug/kg 17beta-estradiol (E2). Gene expression examined at various time points up to 72 hours following treatment. Results provide insight into mechanisms underlying E2-induced uterine growth.", "type": "Expression profiling by array", "pubmed_id": "15598610", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE2195", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1058", "description": "1 h", "sample_id": [ "GSM31735", "GSM31736", "GSM40014", "GSM40015", "GSM40028", "GSM40029" ], "type": "time", "id": "GDS1058_1" }, { "dataset_id": "GDS1058", "description": "2 h", "sample_id": [ "GSM31738", "GSM31739", "GSM40016", "GSM40017", "GSM40030", "GSM40031" ], "type": "time", "id": "GDS1058_2" }, { "dataset_id": "GDS1058", "description": "4 h", "sample_id": [ "GSM31741", "GSM31742", "GSM40018", "GSM40019", "GSM40032", "GSM40033" ], "type": "time", "id": "GDS1058_3" }, { "dataset_id": "GDS1058", "description": "8 h", "sample_id": [ "GSM31744", "GSM31745", "GSM40020", "GSM40021", "GSM40034", "GSM40035" ], "type": "time", "id": "GDS1058_4" }, { "dataset_id": "GDS1058", "description": "24 h", "sample_id": [ "GSM31747", "GSM31748", "GSM40022", "GSM40023", "GSM40036", "GSM40037" ], "type": "time", "id": "GDS1058_5" }, { "dataset_id": "GDS1058", "description": "48 h", "sample_id": [ "GSM31750", "GSM31751", "GSM40024", "GSM40025", "GSM40038", "GSM40039" ], "type": "time", "id": "GDS1058_6" }, { "dataset_id": "GDS1058", "description": "72 h", "sample_id": [ "GSM31753", "GSM31754", "GSM40026", "GSM40027", "GSM40040", "GSM40041" ], "type": "time", "id": "GDS1058_7" }, { "dataset_id": "GDS1058", "description": "untreated", "sample_id": [ "GSM31735", "GSM31738", "GSM31741", "GSM31744", "GSM31747", "GSM31750", "GSM31753", "GSM40014", "GSM40016", "GSM40018", "GSM40020", "GSM40022", "GSM40024", "GSM40026", "GSM40028", "GSM40030", "GSM40032", "GSM40034", "GSM40036", "GSM40038", "GSM40040" ], "type": "agent", "id": "GDS1058_8" }, { "dataset_id": "GDS1058", "description": "estrogen", "sample_id": [ "GSM31736", "GSM31739", "GSM31742", "GSM31745", "GSM31748", "GSM31751", "GSM31754", "GSM40015", "GSM40017", "GSM40019", "GSM40021", "GSM40023", "GSM40025", "GSM40027", "GSM40029", "GSM40031", "GSM40033", "GSM40035", "GSM40037", "GSM40039", "GSM40041" ], "type": "agent", "id": "GDS1058_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1058", "version": 1.0, "instances": "42", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1058.tab", "compression": "gz" } ], [ [ "GDS1059.tab" ], { "title": "Acute myeloid leukemia response to chemotherapy", "description": "Analysis of mononuclear cells from 54 chemotherapy treated patients less than 15 years of age with acute myeloid leukemia (AML). Mononuclear cells taken from peripheral blood or bone marrow. Results identify expression patterns associated with complete remission and relapse with resistant disease.", "type": "Expression profiling by array", "pubmed_id": "12738660", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "58", "value_type": "count", "reference_series": "GSE2191", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1059", "description": "normal", "sample_id": [ "GSM39873", "GSM39874", "GSM39875", "GSM39876" ], "type": "disease state", "id": "GDS1059_1" }, { "dataset_id": "GDS1059", "description": "AML", "sample_id": [ "GSM39819", "GSM39820", "GSM39821", "GSM39822", "GSM39823", "GSM39824", "GSM39825", "GSM39826", "GSM39827", "GSM39828", "GSM39829", "GSM39830", "GSM39831", "GSM39832", "GSM39833", "GSM39834", "GSM39835", "GSM39836", "GSM39837", "GSM39838", "GSM39839", "GSM39840", "GSM39841", "GSM39842", "GSM39843", "GSM39844", "GSM39845", "GSM39846", "GSM39847", "GSM39848", "GSM39849", "GSM39850", "GSM39851", "GSM39852", "GSM39853", "GSM39854", "GSM39855", "GSM39856", "GSM39857", "GSM39858", "GSM39859", "GSM39860", "GSM39861", "GSM39862", "GSM39863", "GSM39864", "GSM39865", "GSM39866", "GSM39867", "GSM39868", "GSM39869", "GSM39870", "GSM39871", "GSM39872" ], "type": "disease state", "id": "GDS1059_2" }, { "dataset_id": "GDS1059", "description": "control", "sample_id": [ "GSM39873", "GSM39874", "GSM39875", "GSM39876" ], "type": "other", "id": "GDS1059_3" }, { "dataset_id": "GDS1059", "description": "no remission", "sample_id": [ "GSM39831" ], "type": "other", "id": "GDS1059_4" }, { "dataset_id": "GDS1059", "description": "complete remission", "sample_id": [ "GSM39819", "GSM39820", "GSM39821", "GSM39822", "GSM39823", "GSM39824", "GSM39825", "GSM39826", "GSM39827", "GSM39846", "GSM39847", "GSM39848", "GSM39849", "GSM39850", "GSM39851", "GSM39855", "GSM39856", "GSM39858", "GSM39859", "GSM39862", "GSM39863", "GSM39865", "GSM39866", "GSM39867", "GSM39869", "GSM39870", "GSM39871", "GSM39872" ], "type": "other", "id": "GDS1059_5" }, { "dataset_id": "GDS1059", "description": "relapse", "sample_id": [ "GSM39828", "GSM39829", "GSM39830", "GSM39832", "GSM39833", "GSM39834", "GSM39835", "GSM39836", "GSM39837", "GSM39838", "GSM39839", "GSM39840", "GSM39841", "GSM39842", "GSM39843", "GSM39844", "GSM39845", "GSM39852", "GSM39853", "GSM39854", "GSM39857", "GSM39860", "GSM39861", "GSM39864", "GSM39868" ], "type": "other", "id": "GDS1059_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1059", "version": 1.0, "instances": "58", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1059.tab", "compression": "gz" } ], [ [ "GDS106.tab" ], { "title": "Snf/Swi mutants (384_F_v1.0)", "description": "Whole-genome expression analysis of mutants deleted for a gene encoding one conserved (Snf2) or one unconserved (Swi1) Snf/Swi component. The Snf/Swi complex controls transcription and chromatin structure.", "type": "Expression profiling by array", "pubmed_id": "10725359", "platform": "GPL65", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE21", "order": "none", "update_date": "Mar 25 2003", "subsets": [ { "dataset_id": "GDS106", "description": "swi1 deletion", "sample_id": [ "GSM1006", "GSM1008", "GSM1012", "GSM1015" ], "type": "strain", "id": "GDS106_1" }, { "dataset_id": "GDS106", "description": "snf2 deletion", "sample_id": [ "GSM1007", "GSM1009", "GSM1013", "GSM1014" ], "type": "strain", "id": "GDS106_2" }, { "dataset_id": "GDS106", "description": "minimal medium", "sample_id": [ "GSM1006", "GSM1007", "GSM1008", "GSM1009" ], "type": "growth protocol", "id": "GDS106_3" }, { "dataset_id": "GDS106", "description": "rich medium", "sample_id": [ "GSM1012", "GSM1013", "GSM1014", "GSM1015" ], "type": "growth protocol", "id": "GDS106_4" } ], "taxid": "4932", "genes": 6361, "aggregation_function": "mean", "name": "GDS106", "version": 1.0, "instances": "8", "variables": 6364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS106.tab", "compression": "gz" } ], [ [ "GDS1062.tab" ], { "title": "Squamous cell carcinoma of the oral cavity with lymph node metastasis", "description": "Expression profiling of 18 primary squamous cell carcinomas of the oral cavity with or without lymph node metastasis. Expression in lymph node metastasis also examined. Results used to identify gene expression signature in primary tumors that indicates the presence of lymph node metastasis.", "type": "Expression profiling by array", "pubmed_id": "15558013", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE2280", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1062", "description": "squamouos cell carcinoma", "sample_id": [ "GSM42247", "GSM42249", "GSM42251", "GSM42253", "GSM42255", "GSM42256", "GSM42257", "GSM42258", "GSM42259", "GSM42260", "GSM42261", "GSM42262", "GSM42263", "GSM42264", "GSM42265", "GSM42266", "GSM42267", "GSM42268", "GSM42269", "GSM42270", "GSM42271", "GSM42272" ], "type": "tissue", "id": "GDS1062_1" }, { "dataset_id": "GDS1062", "description": "lymph node metastasis", "sample_id": [ "GSM42246", "GSM42248", "GSM42250", "GSM42252", "GSM42254" ], "type": "tissue", "id": "GDS1062_2" }, { "dataset_id": "GDS1062", "description": "no metastasis", "sample_id": [ "GSM42262", "GSM42263", "GSM42264", "GSM42265", "GSM42266", "GSM42267", "GSM42268", "GSM42272" ], "type": "disease state", "id": "GDS1062_3" }, { "dataset_id": "GDS1062", "description": "metastasis", "sample_id": [ "GSM42246", "GSM42247", "GSM42248", "GSM42249", "GSM42250", "GSM42251", "GSM42252", "GSM42253", "GSM42254", "GSM42255", "GSM42256", "GSM42257", "GSM42258", "GSM42259", "GSM42260", "GSM42261", "GSM42269", "GSM42270", "GSM42271" ], "type": "disease state", "id": "GDS1062_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1062", "version": 1.0, "instances": "27", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1062.tab", "compression": "gz" } ], [ [ "GDS1063.tab" ], { "title": "Primary effusion lymphomas and associated viral infections", "description": "Analysis of Kaposi's sarcoma-associated herpesvirus (KSHV) positive mononuclear cells from 3 patients with primary effusion lymphoma (PEL), 9 KSHV positive PEL cell lines, and 3 KSHV negative cell lines from lymphomatous effusions. Effect of concomittant Epstein-Barr virus infection also examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE2149", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1063", "description": "mononuclear cell", "sample_id": [ "GSM38789", "GSM38790", "GSM38791" ], "type": "cell type", "id": "GDS1063_1" }, { "dataset_id": "GDS1063", "description": "cell line", "sample_id": [ "GSM38792", "GSM38793", "GSM38794", "GSM38795", "GSM38796", "GSM38797", "GSM38798", "GSM38799", "GSM38800", "GSM38801", "GSM38802", "GSM38803", "GSM38804", "GSM38805", "GSM38806", "GSM38807", "GSM38808", "GSM38809" ], "type": "cell type", "id": "GDS1063_2" }, { "dataset_id": "GDS1063", "description": "KSHV-negative EBV-positive", "sample_id": [ "GSM38802", "GSM38803", "GSM38804", "GSM38805", "GSM38808", "GSM38809" ], "type": "infection", "id": "GDS1063_3" }, { "dataset_id": "GDS1063", "description": "KSHV-positive EBV-negative", "sample_id": [ "GSM38796", "GSM38797", "GSM38800", "GSM38801", "GSM38806", "GSM38807", "GSM38791" ], "type": "infection", "id": "GDS1063_4" }, { "dataset_id": "GDS1063", "description": "KSHV-positive EBV-positive", "sample_id": [ "GSM38792", "GSM38793", "GSM38794", "GSM38795", "GSM38798", "GSM38799", "GSM38789", "GSM38790" ], "type": "infection", "id": "GDS1063_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1063", "version": 1.0, "instances": "21", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1063.tab", "compression": "gz" } ], [ [ "GDS1064.tab" ], { "title": "Acute myeloid leukemia subclasses", "description": "Expression profiling of bone marrow from 43 patients with various forms of acute myeloid leukemia (AML): 10 promyelocytic leukemias with t(15;17), 4 AMLs with inv(16), 7 monocytic leukemias, and 22 nonmonocytic leukemias. Results identify expression signatures unique to each AML subclass.", "type": "Expression profiling by array", "pubmed_id": "15674361", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE1729", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1064", "description": "APL with translocation", "sample_id": [ "GSM30279", "GSM30280", "GSM30281", "GSM30282", "GSM30283", "GSM30284", "GSM30285", "GSM30286", "GSM30287", "GSM30288" ], "type": "disease state", "id": "GDS1064_1" }, { "dataset_id": "GDS1064", "description": "AML with inversion", "sample_id": [ "GSM30289", "GSM30290", "GSM30291", "GSM30292" ], "type": "disease state", "id": "GDS1064_2" }, { "dataset_id": "GDS1064", "description": "acute monoblastic/moncytic leukemia", "sample_id": [ "GSM30299", "GSM30293", "GSM30294", "GSM30295", "GSM30296", "GSM30297", "GSM30298" ], "type": "disease state", "id": "GDS1064_3" }, { "dataset_id": "GDS1064", "description": "AML, minimally differentiated", "sample_id": [ "GSM30314", "GSM30318" ], "type": "disease state", "id": "GDS1064_4" }, { "dataset_id": "GDS1064", "description": "AML without maturation", "sample_id": [ "GSM30310", "GSM30311", "GSM30313", "GSM30301", "GSM30303", "GSM30319", "GSM30320" ], "type": "disease state", "id": "GDS1064_5" }, { "dataset_id": "GDS1064", "description": "AML with maturation", "sample_id": [ "GSM30300", "GSM30316", "GSM30302", "GSM30304", "GSM30305", "GSM30309", "GSM30321" ], "type": "disease state", "id": "GDS1064_6" }, { "dataset_id": "GDS1064", "description": "acute myelomonocytic leukemia", "sample_id": [ "GSM30315", "GSM30307", "GSM30317", "GSM30306", "GSM30308" ], "type": "disease state", "id": "GDS1064_7" }, { "dataset_id": "GDS1064", "description": "acute erythroid leukemia", "sample_id": [ "GSM30312" ], "type": "disease state", "id": "GDS1064_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1064", "version": 1.0, "instances": "43", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1064.tab", "compression": "gz" } ], [ [ "GDS1065.tab" ], { "title": "Mitochondrial encephalomyopathies associated with mitochondrial DNA mutations", "description": "Analysis of muscle from 12 patients with various forms of mitochondrial encephalomyopathies associated with mitochondrial DNA mutations: 8 patients with a A3243G mutation, and 4 patients with a 4977 base pair deletion. Results identify possible expression signature for mitochondrial disorders.", "type": "Expression profiling by array", "pubmed_id": "15728662", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1462", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1065", "description": "wild type", "sample_id": [ "GSM24652", "GSM24653", "GSM24654" ], "type": "genotype/variation", "id": "GDS1065_1" }, { "dataset_id": "GDS1065", "description": "A3243G", "sample_id": [ "GSM24655", "GSM24656", "GSM24657", "GSM24658", "GSM24659", "GSM24660", "GSM24661", "GSM24662" ], "type": "genotype/variation", "id": "GDS1065_2" }, { "dataset_id": "GDS1065", "description": "large deletion", "sample_id": [ "GSM24663", "GSM24664", "GSM24665", "GSM24666" ], "type": "genotype/variation", "id": "GDS1065_3" }, { "dataset_id": "GDS1065", "description": "normal", "sample_id": [ "GSM24652", "GSM24653", "GSM24654" ], "type": "disease state", "id": "GDS1065_4" }, { "dataset_id": "GDS1065", "description": "MELAS", "sample_id": [ "GSM24655", "GSM24656", "GSM24657", "GSM24658" ], "type": "disease state", "id": "GDS1065_5" }, { "dataset_id": "GDS1065", "description": "PEO", "sample_id": [ "GSM24659", "GSM24660", "GSM24661", "GSM24662", "GSM24663", "GSM24664", "GSM24665", "GSM24666" ], "type": "disease state", "id": "GDS1065_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1065", "version": 1.0, "instances": "15", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1065.tab", "compression": "gz" } ], [ [ "GDS1067.tab" ], { "title": "Plasma cell dyscrasias", "description": "Expression profiling of plasma cells from patients with plasma cell dyscrasias: 7 with monoclonal gammopathy of undetermined significance, 39 with multiple myeloma (MM), and 6 with plasma cell leukemia. Results provide insight into the neoplastic transformation of plasma cells in MM.", "type": "Expression profiling by array", "pubmed_id": "15735737", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE2113", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1067", "description": "monoclonal gammopathy of undetermined significance", "sample_id": [ "GSM38155", "GSM38156", "GSM38157", "GSM38158", "GSM38159", "GSM38160", "GSM38161" ], "type": "disease state", "id": "GDS1067_1" }, { "dataset_id": "GDS1067", "description": "multiple myeloma", "sample_id": [ "GSM38162", "GSM38163", "GSM38164", "GSM38165", "GSM38166", "GSM38167", "GSM38168", "GSM38169", "GSM38170", "GSM38171", "GSM38172", "GSM38173", "GSM38174", "GSM38175", "GSM38176", "GSM38177", "GSM38178", "GSM38179", "GSM38180", "GSM38181", "GSM38182", "GSM38183", "GSM38184", "GSM38185", "GSM38186", "GSM38187", "GSM38188", "GSM38189", "GSM38190", "GSM38191", "GSM38192", "GSM38193", "GSM38194", "GSM38195", "GSM38196", "GSM38197", "GSM38198", "GSM38199", "GSM38200" ], "type": "disease state", "id": "GDS1067_2" }, { "dataset_id": "GDS1067", "description": "plasma cell leukemia", "sample_id": [ "GSM38201", "GSM38202", "GSM38203", "GSM38204", "GSM38205", "GSM38206" ], "type": "disease state", "id": "GDS1067_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1067", "version": 1.0, "instances": "52", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1067.tab", "compression": "gz" } ], [ [ "GDS1068.tab" ], { "title": "Wing imaginal disc proneural cluster cells of the peripheral nervous system", "description": "Expression profiling of wing imaginal disc proneural cluster cells (PNCs) of the peripheral nervous system (PNS). PNS PNCs adopt the sensory organ precursor cell fate. PNCs purified by fluorescence-activated cell sorting. Results provide insight into the function of proneural genes in neurogenesis.", "type": "Expression profiling by array", "pubmed_id": "15737936", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2359", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1068", "description": "GFP-negative control", "sample_id": [ "GSM44456", "GSM44457", "GSM44458" ], "type": "cell type", "id": "GDS1068_1" }, { "dataset_id": "GDS1068", "description": "GFP-positive proneural cluster", "sample_id": [ "GSM44459", "GSM44460", "GSM44461" ], "type": "cell type", "id": "GDS1068_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1068", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1068.tab", "compression": "gz" } ], [ [ "GDS1071.tab" ], { "title": "Platelet derived growth factor effect in the presence of Src family kinase inhibitors (MG-U74A)", "description": "Analysis of NIH3T3 fibroblasts treated with platelet-derived growth factor (PDGF) and one of several Src family kinase (SFK) small molecule inhibitors. Inhibitors of SFKs, MEK1/2, and phosphotidylinositol 3-kinase used. Results provide insight into the role of SFKs in PDGF signaling.", "type": "Expression profiling by array", "pubmed_id": "15637050", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2196", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1071", "description": "untreated", "sample_id": [ "GSM40042" ], "type": "agent", "id": "GDS1071_1" }, { "dataset_id": "GDS1071", "description": "vehicle", "sample_id": [ "GSM40303" ], "type": "agent", "id": "GDS1071_2" }, { "dataset_id": "GDS1071", "description": "PDGF", "sample_id": [ "GSM40046", "GSM40304" ], "type": "agent", "id": "GDS1071_3" }, { "dataset_id": "GDS1071", "description": "MEK inhibitor", "sample_id": [ "GSM40043", "GSM40045" ], "type": "agent", "id": "GDS1071_4" }, { "dataset_id": "GDS1071", "description": "PDGF plus MEK inhibitor", "sample_id": [ "GSM40047", "GSM40048" ], "type": "agent", "id": "GDS1071_5" }, { "dataset_id": "GDS1071", "description": "PDGF plus SFK inhibitor", "sample_id": [ "GSM40305" ], "type": "agent", "id": "GDS1071_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1071", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1071.tab", "compression": "gz" } ], [ [ "GDS1072.tab" ], { "title": "Platelet derived growth factor effect in the presence of Src family kinase inhibitors (MOE430A)", "description": "Analysis of NIH3T3 fibroblasts treated with platelet-derived growth factor (PDGF) and one of several Src family kinase (SFK) small molecule inhibitors. Inhibitors of SFKs, MEK1/2, and phosphotidylinositol 3-kinase used. Results provide insight into the role of SFKs in PDGF signaling.", "type": "Expression profiling by array", "pubmed_id": "15637050", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2196", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1072", "description": "vehicle", "sample_id": [ "GSM40295" ], "type": "agent", "id": "GDS1072_1" }, { "dataset_id": "GDS1072", "description": "PDGF", "sample_id": [ "GSM40297" ], "type": "agent", "id": "GDS1072_2" }, { "dataset_id": "GDS1072", "description": "PI3K inhibitor", "sample_id": [ "GSM40296" ], "type": "agent", "id": "GDS1072_3" }, { "dataset_id": "GDS1072", "description": "SFK inhibitor", "sample_id": [ "GSM40298" ], "type": "agent", "id": "GDS1072_4" }, { "dataset_id": "GDS1072", "description": "MEK inhibitor", "sample_id": [ "GSM40299" ], "type": "agent", "id": "GDS1072_5" }, { "dataset_id": "GDS1072", "description": "PDGF plus PI3K inhibitor", "sample_id": [ "GSM40302" ], "type": "agent", "id": "GDS1072_6" }, { "dataset_id": "GDS1072", "description": "PDGF plus SFK inhibitor", "sample_id": [ "GSM40300" ], "type": "agent", "id": "GDS1072_7" }, { "dataset_id": "GDS1072", "description": "PDGF plus MEK inhibitor", "sample_id": [ "GSM40301" ], "type": "agent", "id": "GDS1072_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1072", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1072.tab", "compression": "gz" } ], [ [ "GDS1073.tab" ], { "title": "Heat shock transcription factor 1 mutant response to heat stress", "description": "Analysis of a heat shock transcription factor 1 (HSF1) temperature sensitive mutant strain subjected to heat stress at 33 degrees C. HSF1 mutant contains an arginine to serine and a phenylalanine to serine substitution at residues 206 and 256 respectively. Results identify novel targets of HSF1.", "type": "Expression profiling by array", "pubmed_id": "15647283", "platform": "GPL205", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6084", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE2103", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1073", "description": "wild type", "sample_id": [ "GSM37975", "GSM37978" ], "type": "genotype/variation", "id": "GDS1073_1" }, { "dataset_id": "GDS1073", "description": "hsf1 mutant", "sample_id": [ "GSM37979", "GSM37980" ], "type": "genotype/variation", "id": "GDS1073_2" } ], "taxid": "4932", "genes": 6051, "aggregation_function": "mean", "name": "GDS1073", "version": 1.0, "instances": "4", "variables": 6053, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1073.tab", "compression": "gz" } ], [ [ "GDS1074.tab" ], { "title": "AML1-ETO fusion protein effect on CD34+ hematopoietic cells", "description": "Analysis of CD34+ hematopoietic cells expressing the AML1-ETO fusion protein which is formed in acute myeloid leukemia (AML) from translocation t(8;21). CD34+ cells isolated from peripheral blood progenitor and cord blood cells. Results provide insight into the role of AML1-ETO in leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "15731354", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2049", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1074", "description": "cord blood", "sample_id": [ "GSM37358", "GSM37359" ], "type": "cell type", "id": "GDS1074_1" }, { "dataset_id": "GDS1074", "description": "peripheral blood progenitor", "sample_id": [ "GSM37361", "GSM37363" ], "type": "cell type", "id": "GDS1074_2" }, { "dataset_id": "GDS1074", "description": "AML1-ETO", "sample_id": [ "GSM37358", "GSM37361" ], "type": "agent", "id": "GDS1074_3" }, { "dataset_id": "GDS1074", "description": "empty vector", "sample_id": [ "GSM37359", "GSM37363" ], "type": "agent", "id": "GDS1074_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1074", "version": 1.0, "instances": "4", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1074.tab", "compression": "gz" } ], [ [ "GDS1076.tab" ], { "title": "Corticospinal motor neuron development", "description": "Analysis of corticospinal motor neurons (CSMN) of C57BL/6 at embryonic day 18 to postnatal day 14. CSMN degeneration contributes to amyotrophic lateral sclerosis. CSMN compared to callosal projection and corticotectal projection neurons. Results provide insight into CSMN development.", "type": "Expression profiling by array", "pubmed_id": "15664173", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE2039", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1076", "description": "callosal neuron", "sample_id": [ "GSM37082", "GSM37083", "GSM37084", "GSM37085", "GSM37086", "GSM37087", "GSM37088", "GSM37089" ], "type": "cell type", "id": "GDS1076_1" }, { "dataset_id": "GDS1076", "description": "corticotectal neuron", "sample_id": [ "GSM37099", "GSM37100" ], "type": "cell type", "id": "GDS1076_2" }, { "dataset_id": "GDS1076", "description": "corticospinal motor neuron", "sample_id": [ "GSM37090", "GSM37091", "GSM37092", "GSM37093", "GSM37094", "GSM37095", "GSM37096", "GSM37097", "GSM37098" ], "type": "cell type", "id": "GDS1076_3" }, { "dataset_id": "GDS1076", "description": "E18", "sample_id": [ "GSM37082", "GSM37083", "GSM37090", "GSM37091" ], "type": "development stage", "id": "GDS1076_4" }, { "dataset_id": "GDS1076", "description": "P3", "sample_id": [ "GSM37084", "GSM37085", "GSM37092", "GSM37093", "GSM37094" ], "type": "development stage", "id": "GDS1076_5" }, { "dataset_id": "GDS1076", "description": "P6", "sample_id": [ "GSM37086", "GSM37087", "GSM37095", "GSM37096" ], "type": "development stage", "id": "GDS1076_6" }, { "dataset_id": "GDS1076", "description": "P14", "sample_id": [ "GSM37088", "GSM37089", "GSM37097", "GSM37098", "GSM37099", "GSM37100" ], "type": "development stage", "id": "GDS1076_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1076", "version": 1.0, "instances": "19", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1076.tab", "compression": "gz" } ], [ [ "GDS1077.tab" ], { "title": "Hematopoietic stem cells from different recombinant inbred strains", "description": "Expression profiling of Lin- Sca-1+ c-kit+ hematopoietic stem cells (HSC) from 22 different BXD recombinant inbred (RI) strains. Each RI strain is homozygous for alleles at about 98% of loci. Results combined with QTL mapping to identify candidate genes for the control of HSC function.", "type": "Expression profiling by array", "pubmed_id": "15711547", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE2031", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1077", "description": "BXD1", "sample_id": [ "GSM36707", "GSM36708" ], "type": "strain", "id": "GDS1077_1" }, { "dataset_id": "GDS1077", "description": "BXD2", "sample_id": [ "GSM36703", "GSM36704" ], "type": "strain", "id": "GDS1077_2" }, { "dataset_id": "GDS1077", "description": "BXD5", "sample_id": [ "GSM36711", "GSM36712" ], "type": "strain", "id": "GDS1077_3" }, { "dataset_id": "GDS1077", "description": "BXD6", "sample_id": [ "GSM36673", "GSM36674" ], "type": "strain", "id": "GDS1077_4" }, { "dataset_id": "GDS1077", "description": "BXD8", "sample_id": [ "GSM36675", "GSM36676" ], "type": "strain", "id": "GDS1077_5" }, { "dataset_id": "GDS1077", "description": "BXD9", "sample_id": [ "GSM36699", "GSM36700" ], "type": "strain", "id": "GDS1077_6" }, { "dataset_id": "GDS1077", "description": "BXD11", "sample_id": [ "GSM36677", "GSM36678" ], "type": "strain", "id": "GDS1077_7" }, { "dataset_id": "GDS1077", "description": "BXD12", "sample_id": [ "GSM36679", "GSM36680" ], "type": "strain", "id": "GDS1077_8" }, { "dataset_id": "GDS1077", "description": "BXD14", "sample_id": [ "GSM36713", "GSM36714" ], "type": "strain", "id": "GDS1077_9" }, { "dataset_id": "GDS1077", "description": "BXD16", "sample_id": [ "GSM36705", "GSM36706" ], "type": "strain", "id": "GDS1077_10" }, { "dataset_id": "GDS1077", "description": "BXD18", "sample_id": [ "GSM36693", "GSM36694" ], "type": "strain", "id": "GDS1077_11" }, { "dataset_id": "GDS1077", "description": "BXD19", "sample_id": [ "GSM36697", "GSM36698" ], "type": "strain", "id": "GDS1077_12" }, { "dataset_id": "GDS1077", "description": "BXD21", "sample_id": [ "GSM36695", "GSM36696" ], "type": "strain", "id": "GDS1077_13" }, { "dataset_id": "GDS1077", "description": "BXD28", "sample_id": [ "GSM36715", "GSM36716" ], "type": "strain", "id": "GDS1077_14" }, { "dataset_id": "GDS1077", "description": "BXD31", "sample_id": [ "GSM36681", "GSM36682" ], "type": "strain", "id": "GDS1077_15" }, { "dataset_id": "GDS1077", "description": "BXD32", "sample_id": [ "GSM36691", "GSM36692" ], "type": "strain", "id": "GDS1077_16" }, { "dataset_id": "GDS1077", "description": "BXD33", "sample_id": [ "GSM36683", "GSM36684" ], "type": "strain", "id": "GDS1077_17" }, { "dataset_id": "GDS1077", "description": "BXD34", "sample_id": [ "GSM36709", "GSM36710" ], "type": "strain", "id": "GDS1077_18" }, { "dataset_id": "GDS1077", "description": "BXD38", "sample_id": [ "GSM36685", "GSM36686" ], "type": "strain", "id": "GDS1077_19" }, { "dataset_id": "GDS1077", "description": "BXD39", "sample_id": [ "GSM36701", "GSM36702" ], "type": "strain", "id": "GDS1077_20" }, { "dataset_id": "GDS1077", "description": "BXD40", "sample_id": [ "GSM36687", "GSM36688" ], "type": "strain", "id": "GDS1077_21" }, { "dataset_id": "GDS1077", "description": "BXD42", "sample_id": [ "GSM36689", "GSM36690" ], "type": "strain", "id": "GDS1077_22" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1077", "version": 1.0, "instances": "44", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1077.tab", "compression": "gz" } ], [ [ "GDS1078.tab" ], { "title": "E2F-1 overexpression effect on melanoma cells", "description": "Expression profiling of SKMEL-2 melanoma cells overexpressing the transcription factor E2F-1. E2F-1 overexpression induces apoptosis in many tumor cells. Results provide insight into the mechanisms underlying E2F-1 induced apoptosis in melanoma cells.", "type": "Expression profiling by array", "pubmed_id": "15656974", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1562", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1078", "description": "control", "sample_id": [ "GSM24425", "GSM24427" ], "type": "agent", "id": "GDS1078_1" }, { "dataset_id": "GDS1078", "description": "exogenous E2F-1", "sample_id": [ "GSM24426", "GSM24428" ], "type": "agent", "id": "GDS1078_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1078", "version": 1.0, "instances": "4", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1078.tab", "compression": "gz" } ], [ [ "GDS1079.tab" ], { "title": "Age effect on myoblast progenitors", "description": "Analysis of primary myoblast progenitor (MP) cultures from 8 and 23 month old DBA/2JNIA females. MPs are responsible for the growth, repair, and maintenance of skeletal muscle. Results provide insight into age-related alterations in MP function that contribute to changes in muscle composition.", "type": "Expression profiling by array", "pubmed_id": "15569352", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE273", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1079", "description": "8 mo", "sample_id": [ "GSM3810", "GSM3811" ], "type": "age", "id": "GDS1079_1" }, { "dataset_id": "GDS1079", "description": "23 mo", "sample_id": [ "GSM3812", "GSM3813" ], "type": "age", "id": "GDS1079_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1079", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1079.tab", "compression": "gz" } ], [ [ "GDS108.tab" ], { "title": "Menadione exposure time course", "description": "Superoxide-generating drug menadione bisulphate (1 mM) added to culture and samples removed at several time points up to 160 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL64", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS108", "description": "10 minute", "sample_id": [ "GSM1105" ], "type": "time", "id": "GDS108_1" }, { "dataset_id": "GDS108", "description": "20 minute", "sample_id": [ "GSM1100" ], "type": "time", "id": "GDS108_2" }, { "dataset_id": "GDS108", "description": "30 minute", "sample_id": [ "GSM1101" ], "type": "time", "id": "GDS108_3" }, { "dataset_id": "GDS108", "description": "40 minute", "sample_id": [ "GSM1104" ], "type": "time", "id": "GDS108_4" }, { "dataset_id": "GDS108", "description": "50 minute", "sample_id": [ "GSM895" ], "type": "time", "id": "GDS108_5" }, { "dataset_id": "GDS108", "description": "80 minute", "sample_id": [ "GSM1106" ], "type": "time", "id": "GDS108_6" }, { "dataset_id": "GDS108", "description": "105 minute", "sample_id": [ "GSM1107" ], "type": "time", "id": "GDS108_7" }, { "dataset_id": "GDS108", "description": "120 minute", "sample_id": [ "GSM1102" ], "type": "time", "id": "GDS108_8" }, { "dataset_id": "GDS108", "description": "160 minute", "sample_id": [ "GSM1103" ], "type": "time", "id": "GDS108_9" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS108", "version": 1.0, "instances": "9", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS108.tab", "compression": "gz" } ], [ [ "GDS1080.tab" ], { "title": "Manganese superoxide dismutase deficiency effect on hearts", "description": "Analysis of hearts from C57BL/6 mutants lacking manganese superoxide dismutase (MnSOD). MnSOD deficiency confined to heart and muscle. Mutants developed progressive congestive heart failure with dilated cardiomyopathy. Results provide insight into the effect of excess oxidative stress on the heart.", "type": "Expression profiling by array", "pubmed_id": "16959785", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2236", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1080", "description": "control", "sample_id": [ "GSM40959", "GSM40960" ], "type": "genotype/variation", "id": "GDS1080_1" }, { "dataset_id": "GDS1080", "description": "MnSOD deficient", "sample_id": [ "GSM40957", "GSM40958" ], "type": "genotype/variation", "id": "GDS1080_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1080", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1080.tab", "compression": "gz" } ], [ [ "GDS1084.tab" ], { "title": "Homeobox Dlx1/2 mutations effect on embryonic telencephalon", "description": "Expression profiling of cortex and basal ganglia from embryonic telencephalon of homozygous and heterozygous Dlx1/2 mutants. Mutants examined at embryonic day 14.5. Dlx homeobox transcription factors are implicated in regulating the function of inhibitory neurons.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2161", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1084", "description": "basal ganglion", "sample_id": [ "GSM38974", "GSM38975", "GSM38976", "GSM38977" ], "type": "tissue", "id": "GDS1084_1" }, { "dataset_id": "GDS1084", "description": "cortex", "sample_id": [ "GSM38978", "GSM38979", "GSM38980", "GSM38981" ], "type": "tissue", "id": "GDS1084_2" }, { "dataset_id": "GDS1084", "description": "heterozygous dlx1/2 mutant", "sample_id": [ "GSM38974", "GSM38975", "GSM38978", "GSM38979" ], "type": "genotype/variation", "id": "GDS1084_3" }, { "dataset_id": "GDS1084", "description": "homozygous dlx1/2 mutant", "sample_id": [ "GSM38976", "GSM38977", "GSM38980", "GSM38981" ], "type": "genotype/variation", "id": "GDS1084_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1084", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1084.tab", "compression": "gz" } ], [ [ "GDS1085.tab" ], { "title": "Normal tissues of diverse types (SHBW)", "description": "Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.", "type": "Expression profiling by array", "pubmed_id": "15774023", "platform": "GPL1823", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "35", "value_type": "log ratio", "reference_series": "GSE2193", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1085", "description": "adrenal", "sample_id": [ "GSM39896", "GSM39906" ], "type": "tissue", "id": "GDS1085_1" }, { "dataset_id": "GDS1085", "description": "bladder", "sample_id": [ "GSM39895", "GSM39918" ], "type": "tissue", "id": "GDS1085_2" }, { "dataset_id": "GDS1085", "description": "brain, frontal cortex", "sample_id": [ "GSM39887", "GSM39907" ], "type": "tissue", "id": "GDS1085_3" }, { "dataset_id": "GDS1085", "description": "brain, occipital cortex", "sample_id": [ "GSM39888", "GSM39908" ], "type": "tissue", "id": "GDS1085_4" }, { "dataset_id": "GDS1085", "description": "brain, temporal cortex", "sample_id": [ "GSM39905" ], "type": "tissue", "id": "GDS1085_5" }, { "dataset_id": "GDS1085", "description": "cervix, endocervical cana", "sample_id": [ "GSM39919" ], "type": "tissue", "id": "GDS1085_6" }, { "dataset_id": "GDS1085", "description": "colon, ascending", "sample_id": [ "GSM39890" ], "type": "tissue", "id": "GDS1085_7" }, { "dataset_id": "GDS1085", "description": "diaphragm", "sample_id": [ "GSM39904" ], "type": "tissue", "id": "GDS1085_8" }, { "dataset_id": "GDS1085", "description": "kidney", "sample_id": [ "GSM39915" ], "type": "tissue", "id": "GDS1085_9" }, { "dataset_id": "GDS1085", "description": "lung", "sample_id": [ "GSM39909", "GSM39912", "GSM39921" ], "type": "tissue", "id": "GDS1085_10" }, { "dataset_id": "GDS1085", "description": "ovary", "sample_id": [ "GSM39892", "GSM39917", "GSM39897" ], "type": "tissue", "id": "GDS1085_11" }, { "dataset_id": "GDS1085", "description": "prostate", "sample_id": [ "GSM39910", "GSM39911", "GSM39913", "GSM39916" ], "type": "tissue", "id": "GDS1085_12" }, { "dataset_id": "GDS1085", "description": "salivary gland, parotid", "sample_id": [ "GSM39891", "GSM39900", "GSM39901", "GSM39920" ], "type": "tissue", "id": "GDS1085_13" }, { "dataset_id": "GDS1085", "description": "small bowel, duodenum", "sample_id": [ "GSM39914" ], "type": "tissue", "id": "GDS1085_14" }, { "dataset_id": "GDS1085", "description": "stomach, fundus", "sample_id": [ "GSM39899" ], "type": "tissue", "id": "GDS1085_15" }, { "dataset_id": "GDS1085", "description": "testes", "sample_id": [ "GSM39903" ], "type": "tissue", "id": "GDS1085_16" }, { "dataset_id": "GDS1085", "description": "thymus", "sample_id": [ "GSM39898" ], "type": "tissue", "id": "GDS1085_17" }, { "dataset_id": "GDS1085", "description": "uterine corpus, myometriun", "sample_id": [ "GSM39893" ], "type": "tissue", "id": "GDS1085_18" }, { "dataset_id": "GDS1085", "description": "uterus, endomyometrium", "sample_id": [ "GSM39889", "GSM39902" ], "type": "tissue", "id": "GDS1085_19" }, { "dataset_id": "GDS1085", "description": "vagina", "sample_id": [ "GSM39894" ], "type": "tissue", "id": "GDS1085_20" } ], "taxid": "9606", "genes": 36138, "aggregation_function": "mean", "name": "GDS1085", "version": 1.0, "instances": "35", "variables": 36140, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1085.tab", "compression": "gz" } ], [ [ "GDS1088.tab" ], { "title": "Normal tissues of diverse types (SHDP)", "description": "Expression profiling of 115 samples from 35 different types of normal tissues. Samples obtained by surgery or autopsy, and evaluated by pathologists. Results provide insight into the molecular organization of diverse cell types, and provide a baseline for comparison to diseased tissues.", "type": "Expression profiling by array", "pubmed_id": "15774023", "platform": "GPL1826", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43104", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE2193", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1088", "description": "Fallopian tube", "sample_id": [ "GSM39991", "GSM40000" ], "type": "tissue", "id": "GDS1088_1" }, { "dataset_id": "GDS1088", "description": "Gallbladder", "sample_id": [ "GSM39993" ], "type": "tissue", "id": "GDS1088_2" }, { "dataset_id": "GDS1088", "description": "Heart", "sample_id": [ "GSM39992", "GSM39994", "GSM39999", "GSM40001" ], "type": "tissue", "id": "GDS1088_3" }, { "dataset_id": "GDS1088", "description": "Thyroid", "sample_id": [ "GSM39995", "GSM39996", "GSM39997", "GSM39998" ], "type": "tissue", "id": "GDS1088_4" } ], "taxid": "9606", "genes": 34484, "aggregation_function": "mean", "name": "GDS1088", "version": 1.0, "instances": "11", "variables": 34486, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1088.tab", "compression": "gz" } ], [ [ "GDS1093.tab" ], { "title": "NADH-cytochrome P450 reductase deletion effect on liver", "description": "Analysis of liver from male 3 month old hepatic NADH-cytochrome P450 reductase null mutants (POR). Results provide insight into the central role of POR and the P450 system in controlling hepatic homeostasis.", "type": "Expression profiling by array", "pubmed_id": "15717863", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1468", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1093", "description": "wild type", "sample_id": [ "GSM24728", "GSM24729" ], "type": "genotype/variation", "id": "GDS1093_1" }, { "dataset_id": "GDS1093", "description": "POR null", "sample_id": [ "GSM24730", "GSM24747" ], "type": "genotype/variation", "id": "GDS1093_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1093", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1093.tab", "compression": "gz" } ], [ [ "GDS1094.tab" ], { "title": "Estrogen receptor alpha/beta heterodimer action in response to estrogen and tamoxifen", "description": "Expression profiling of U2OS osteosarcoma cell line expressing estrogen receptor/alpha heterodimer after treatment with 10 nM 17beta-estradiol (E2) or 10 nM 4-OH tamoxifen (4HT) for 24 hours. Results provide insight into the role of estrogen receptor/alpha heterodimer in gene regulation.", "type": "Expression profiling by array", "pubmed_id": "15802376", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE2292", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1094", "description": "control", "sample_id": [ "GSM42574", "GSM42575", "GSM42576", "GSM42577", "GSM42578", "GSM42579", "GSM42588", "GSM42589", "GSM42590", "GSM42591", "GSM42592", "GSM42593", "GSM42594", "GSM42604", "GSM42605", "GSM42606", "GSM42607", "GSM42608", "GSM42609", "GSM42610" ], "type": "agent", "id": "GDS1094_1" }, { "dataset_id": "GDS1094", "description": "4OH-tamoxifen", "sample_id": [ "GSM42236", "GSM42571", "GSM42572", "GSM42573", "GSM42584", "GSM42585", "GSM42586", "GSM42587", "GSM42600", "GSM42601", "GSM42602", "GSM42603" ], "type": "agent", "id": "GDS1094_2" }, { "dataset_id": "GDS1094", "description": "17beta-estradiol", "sample_id": [ "GSM42580", "GSM42581", "GSM42582", "GSM42583", "GSM42595", "GSM42596", "GSM42597", "GSM42598", "GSM42599", "GSM42611", "GSM42612", "GSM42613", "GSM42614" ], "type": "agent", "id": "GDS1094_3" }, { "dataset_id": "GDS1094", "description": "estrogen receptor alpha", "sample_id": [ "GSM42236", "GSM42571", "GSM42572", "GSM42573", "GSM42574", "GSM42575", "GSM42576", "GSM42577", "GSM42578", "GSM42579", "GSM42580", "GSM42581", "GSM42582", "GSM42583" ], "type": "genotype/variation", "id": "GDS1094_4" }, { "dataset_id": "GDS1094", "description": "estrogen receptor beta", "sample_id": [ "GSM42584", "GSM42585", "GSM42586", "GSM42587", "GSM42588", "GSM42589", "GSM42590", "GSM42591", "GSM42592", "GSM42593", "GSM42594", "GSM42595", "GSM42596", "GSM42597", "GSM42598", "GSM42599" ], "type": "genotype/variation", "id": "GDS1094_5" }, { "dataset_id": "GDS1094", "description": "estrogen receptor alpha/beta", "sample_id": [ "GSM42600", "GSM42601", "GSM42602", "GSM42603", "GSM42604", "GSM42605", "GSM42606", "GSM42607", "GSM42608", "GSM42609", "GSM42610", "GSM42611", "GSM42612", "GSM42613", "GSM42614" ], "type": "genotype/variation", "id": "GDS1094_6" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1094", "version": 1.0, "instances": "45", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1094.tab", "compression": "gz" } ], [ [ "GDS1095.tab" ], { "title": "Hematopoeitic stem cells of various types", "description": "Expression profiling of Lin-CD34-, Lin-CD34+, and Lin+CD34+ peripheral blood hematopoeitic stem cells (HSCs). Results provide insight into the molecular basis of the association of CD34 expression with self-renewal and lineage commitment in HSCs.", "type": "Expression profiling by array", "pubmed_id": "15790771", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1493", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1095", "description": "Lin negative, CD34 negative", "sample_id": [ "GSM25887", "GSM25888" ], "type": "cell type", "id": "GDS1095_1" }, { "dataset_id": "GDS1095", "description": "Lin negative, CD34 positive", "sample_id": [ "GSM25885", "GSM25886" ], "type": "cell type", "id": "GDS1095_2" }, { "dataset_id": "GDS1095", "description": "Lin positive, CD34 positive", "sample_id": [ "GSM25883", "GSM25884" ], "type": "cell type", "id": "GDS1095_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1095", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1095.tab", "compression": "gz" } ], [ [ "GDS1096.tab" ], { "title": "Normal tissues of various types", "description": "Expression profiling of 36 types of normal tissue. Each RNA tissue sample pooled from several donors. Results identify tissue specific genes and provide baselines for interpreting gene expression in cancer.", "type": "Expression profiling by array", "pubmed_id": "15950434", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE2361", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1096", "description": "adrenal gland", "sample_id": [ "GSM44692" ], "type": "tissue", "id": "GDS1096_1" }, { "dataset_id": "GDS1096", "description": "amygdala", "sample_id": [ "GSM44694" ], "type": "tissue", "id": "GDS1096_2" }, { "dataset_id": "GDS1096", "description": "bladder", "sample_id": [ "GSM44682" ], "type": "tissue", "id": "GDS1096_3" }, { "dataset_id": "GDS1096", "description": "bone marrow", "sample_id": [ "GSM44693" ], "type": "tissue", "id": "GDS1096_4" }, { "dataset_id": "GDS1096", "description": "brain", "sample_id": [ "GSM44690" ], "type": "tissue", "id": "GDS1096_5" }, { "dataset_id": "GDS1096", "description": "breast", "sample_id": [ "GSM44683" ], "type": "tissue", "id": "GDS1096_6" }, { "dataset_id": "GDS1096", "description": "caudate nucleus", "sample_id": [ "GSM44695" ], "type": "tissue", "id": "GDS1096_7" }, { "dataset_id": "GDS1096", "description": "cerebellum", "sample_id": [ "GSM44689" ], "type": "tissue", "id": "GDS1096_8" }, { "dataset_id": "GDS1096", "description": "colon", "sample_id": [ "GSM44680" ], "type": "tissue", "id": "GDS1096_9" }, { "dataset_id": "GDS1096", "description": "corpus", "sample_id": [ "GSM44696" ], "type": "tissue", "id": "GDS1096_10" }, { "dataset_id": "GDS1096", "description": "fetal brain", "sample_id": [ "GSM44691" ], "type": "tissue", "id": "GDS1096_11" }, { "dataset_id": "GDS1096", "description": "fetal liver", "sample_id": [ "GSM44706" ], "type": "tissue", "id": "GDS1096_12" }, { "dataset_id": "GDS1096", "description": "fetal lung", "sample_id": [ "GSM44705" ], "type": "tissue", "id": "GDS1096_13" }, { "dataset_id": "GDS1096", "description": "heart", "sample_id": [ "GSM44671" ], "type": "tissue", "id": "GDS1096_14" }, { "dataset_id": "GDS1096", "description": "hippocampus", "sample_id": [ "GSM44697" ], "type": "tissue", "id": "GDS1096_15" }, { "dataset_id": "GDS1096", "description": "kidney", "sample_id": [ "GSM44675" ], "type": "tissue", "id": "GDS1096_16" }, { "dataset_id": "GDS1096", "description": "liver", "sample_id": [ "GSM44702" ], "type": "tissue", "id": "GDS1096_17" }, { "dataset_id": "GDS1096", "description": "lung", "sample_id": [ "GSM44704" ], "type": "tissue", "id": "GDS1096_18" }, { "dataset_id": "GDS1096", "description": "ovary", "sample_id": [ "GSM44674" ], "type": "tissue", "id": "GDS1096_19" }, { "dataset_id": "GDS1096", "description": "pancreas", "sample_id": [ "GSM44677" ], "type": "tissue", "id": "GDS1096_20" }, { "dataset_id": "GDS1096", "description": "pituitary gland", "sample_id": [ "GSM44699" ], "type": "tissue", "id": "GDS1096_21" }, { "dataset_id": "GDS1096", "description": "placenta", "sample_id": [ "GSM44681" ], "type": "tissue", "id": "GDS1096_22" }, { "dataset_id": "GDS1096", "description": "prostate", "sample_id": [ "GSM44678" ], "type": "tissue", "id": "GDS1096_23" }, { "dataset_id": "GDS1096", "description": "smooth muscle", "sample_id": [ "GSM44676" ], "type": "tissue", "id": "GDS1096_24" }, { "dataset_id": "GDS1096", "description": "salivary gland", "sample_id": [ "GSM44687" ], "type": "tissue", "id": "GDS1096_25" }, { "dataset_id": "GDS1096", "description": "skin", "sample_id": [ "GSM44686" ], "type": "tissue", "id": "GDS1096_26" }, { "dataset_id": "GDS1096", "description": "small intestine", "sample_id": [ "GSM44679" ], "type": "tissue", "id": "GDS1096_27" }, { "dataset_id": "GDS1096", "description": "spinal cord", "sample_id": [ "GSM44700" ], "type": "tissue", "id": "GDS1096_28" }, { "dataset_id": "GDS1096", "description": "spleen", "sample_id": [ "GSM44673" ], "type": "tissue", "id": "GDS1096_29" }, { "dataset_id": "GDS1096", "description": "stomach", "sample_id": [ "GSM44703" ], "type": "tissue", "id": "GDS1096_30" }, { "dataset_id": "GDS1096", "description": "testis", "sample_id": [ "GSM44701" ], "type": "tissue", "id": "GDS1096_31" }, { "dataset_id": "GDS1096", "description": "thalamus", "sample_id": [ "GSM44698" ], "type": "tissue", "id": "GDS1096_32" }, { "dataset_id": "GDS1096", "description": "thymus", "sample_id": [ "GSM44672" ], "type": "tissue", "id": "GDS1096_33" }, { "dataset_id": "GDS1096", "description": "thyroid", "sample_id": [ "GSM44685" ], "type": "tissue", "id": "GDS1096_34" }, { "dataset_id": "GDS1096", "description": "trachea", "sample_id": [ "GSM44688" ], "type": "tissue", "id": "GDS1096_35" }, { "dataset_id": "GDS1096", "description": "uterus", "sample_id": [ "GSM44684" ], "type": "tissue", "id": "GDS1096_36" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1096", "version": 1.0, "instances": "36", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1096.tab", "compression": "gz" } ], [ [ "GDS1099.tab" ], { "title": "Carbon source quality effect on gene expression", "description": "Analysis of MG1655 cells grown aerobically in several media each with a different carbon source. Carbon sources used in decreasing order of quality were glucose, glycerol, succinate, L-alanine, acetate, and L-proline. Results provide insight into the response of cells to carbon source quality.", "type": "Expression profiling by array", "pubmed_id": "15705577", "platform": "GPL199", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7312", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2037", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1099", "description": "glucose", "sample_id": [ "GSM37063", "GSM37064", "GSM37065", "GSM37066", "GSM37067" ], "type": "growth protocol", "id": "GDS1099_1" }, { "dataset_id": "GDS1099", "description": "glycerol", "sample_id": [ "GSM37068", "GSM37069" ], "type": "growth protocol", "id": "GDS1099_2" }, { "dataset_id": "GDS1099", "description": "succinate", "sample_id": [ "GSM37070", "GSM37071" ], "type": "growth protocol", "id": "GDS1099_3" }, { "dataset_id": "GDS1099", "description": "alanine", "sample_id": [ "GSM37072", "GSM37073" ], "type": "growth protocol", "id": "GDS1099_4" }, { "dataset_id": "GDS1099", "description": "acetate", "sample_id": [ "GSM37074", "GSM37075" ], "type": "growth protocol", "id": "GDS1099_5" }, { "dataset_id": "GDS1099", "description": "proline", "sample_id": [ "GSM37076", "GSM37077" ], "type": "growth protocol", "id": "GDS1099_6" } ], "taxid": "562", "genes": 7103, "aggregation_function": "mean", "name": "GDS1099", "version": 1.0, "instances": "15", "variables": 7105, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1099.tab", "compression": "gz" } ], [ [ "GDS110.tab" ], { "title": "Cyclin overexpression", "description": "Cells arrested in G1 for CLN3 overexpression. Included as part of a comprehensive identification of cell cycle-regulated genes.", "type": "Expression profiling by array", "pubmed_id": "9843569", "platform": "GPL61", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7744", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE25", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS110", "description": "30 minute", "sample_id": [ "GSM1111" ], "type": "time", "id": "GDS110_1" }, { "dataset_id": "GDS110", "description": "40 minute", "sample_id": [ "GSM899" ], "type": "time", "id": "GDS110_2" } ], "taxid": "4932", "genes": 6287, "aggregation_function": "mean", "name": "GDS110", "version": 1.0, "instances": "2", "variables": 6289, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS110.tab", "compression": "gz" } ], [ [ "GDS1103.tab" ], { "title": "leu3 mutant expression profiles", "description": "Analysis of leu3 mutant grown in either limited ethanol or limited ammonium media. Leu3p regulates a gene involved in nitrogen assimilation and six genes involved in branched chain amino acid metabolism. Results provide insight into the role of Leu3p in gene regulation.", "type": "Expression profiling by array", "pubmed_id": "15949974", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2076", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1103", "description": "leu3 mutant", "sample_id": [ "GSM37618", "GSM37619", "GSM37620", "GSM37621", "GSM37622", "GSM37623" ], "type": "genotype/variation", "id": "GDS1103_1" }, { "dataset_id": "GDS1103", "description": "wild type", "sample_id": [ "GSM37612", "GSM37613", "GSM37614", "GSM37615", "GSM37616", "GSM37617" ], "type": "genotype/variation", "id": "GDS1103_2" }, { "dataset_id": "GDS1103", "description": "ethanol limited", "sample_id": [ "GSM37612", "GSM37613", "GSM37614", "GSM37618", "GSM37619", "GSM37620" ], "type": "growth protocol", "id": "GDS1103_3" }, { "dataset_id": "GDS1103", "description": "ammonium limited", "sample_id": [ "GSM37615", "GSM37616", "GSM37617", "GSM37621", "GSM37622", "GSM37623" ], "type": "growth protocol", "id": "GDS1103_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1103", "version": 1.0, "instances": "12", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1103.tab", "compression": "gz" } ], [ [ "GDS1107.tab" ], { "title": "Blastocyst response to various MAPK pathway inhibitors (MOE430A)", "description": "Expression profiling of blastocysts following inhibition of JNK, p38 MAPK, or ERK signaling. JNK, p38 MAPK, and ERK signaling inhibited by SP600125, SB203580, and U0126 respectively. Results provide insight into the role of MAPK pathways in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15772134", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2229", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1107", "description": "untreated", "sample_id": [ "GSM40799" ], "type": "agent", "id": "GDS1107_1" }, { "dataset_id": "GDS1107", "description": "p38 MAPK inhibitor", "sample_id": [ "GSM40801" ], "type": "agent", "id": "GDS1107_2" }, { "dataset_id": "GDS1107", "description": "JNK inhibitor", "sample_id": [ "GSM40802" ], "type": "agent", "id": "GDS1107_3" }, { "dataset_id": "GDS1107", "description": "ERK inhibitor", "sample_id": [ "GSM40803" ], "type": "agent", "id": "GDS1107_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1107", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1107.tab", "compression": "gz" } ], [ [ "GDS1108.tab" ], { "title": "Blastocyst response to various MAPK pathway inhibitors (MOE430B)", "description": "Expression profiling of blastocysts following inhibition of JNK, p38 MAPK, or ERK signaling. JNK, p38 MAPK, and ERK signaling inhibited by SP600125, SB203580, and U0126 respectively. Results provide insight into the role of MAPK pathways in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15772134", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2229", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1108", "description": "untreated", "sample_id": [ "GSM40865" ], "type": "agent", "id": "GDS1108_1" }, { "dataset_id": "GDS1108", "description": "p38 MAPK inhibitor", "sample_id": [ "GSM40866" ], "type": "agent", "id": "GDS1108_2" }, { "dataset_id": "GDS1108", "description": "JNK inhibitor", "sample_id": [ "GSM40867" ], "type": "agent", "id": "GDS1108_3" }, { "dataset_id": "GDS1108", "description": "ERK inhibitor", "sample_id": [ "GSM40868" ], "type": "agent", "id": "GDS1108_4" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1108", "version": 1.0, "instances": "4", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1108.tab", "compression": "gz" } ], [ [ "GDS1109.tab" ], { "title": "Blastocyst response to various MAPK pathway inhibitors (MOE430 2.0)", "description": "Expression profiling of blastocysts following inhibition of JNK, p38 MAPK, or ERK signaling. JNK, p38 MAPK, and ERK signaling inhibited by SP600125, SB203580, and U0126 respectively. Results provide insight into the role of MAPK pathways in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15772134", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2229", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1109", "description": "untreated", "sample_id": [ "GSM40869", "GSM40873" ], "type": "agent", "id": "GDS1109_1" }, { "dataset_id": "GDS1109", "description": "p38 MAPK inhibitor", "sample_id": [ "GSM40870", "GSM40874" ], "type": "agent", "id": "GDS1109_2" }, { "dataset_id": "GDS1109", "description": "JNK inhibitor", "sample_id": [ "GSM40871", "GSM40875" ], "type": "agent", "id": "GDS1109_3" }, { "dataset_id": "GDS1109", "description": "ERK inhibitor", "sample_id": [ "GSM40872", "GSM40876" ], "type": "agent", "id": "GDS1109_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1109", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1109.tab", "compression": "gz" } ], [ [ "GDS111.tab" ], { "title": "Steady-state temperature (y14)", "description": "Samples collected from cells grown continuously at 15\u00b0C, 17\u00b0C, 21\u00b0C, 25\u00b0C, 29\u00b0C, 33\u00b0C and 36\u00b0C. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL54", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS111", "description": "15\u00b0C", "sample_id": [ "GSM1041" ], "type": "temperature", "id": "GDS111_1" }, { "dataset_id": "GDS111", "description": "17\u00b0C", "sample_id": [ "GSM1047" ], "type": "temperature", "id": "GDS111_2" }, { "dataset_id": "GDS111", "description": "21\u00b0C", "sample_id": [ "GSM1042" ], "type": "temperature", "id": "GDS111_3" }, { "dataset_id": "GDS111", "description": "25\u00b0C", "sample_id": [ "GSM1043" ], "type": "temperature", "id": "GDS111_4" }, { "dataset_id": "GDS111", "description": "29\u00b0C", "sample_id": [ "GSM1044" ], "type": "temperature", "id": "GDS111_5" }, { "dataset_id": "GDS111", "description": "33\u00b0C", "sample_id": [ "GSM1045" ], "type": "temperature", "id": "GDS111_6" }, { "dataset_id": "GDS111", "description": "36\u00b0C", "sample_id": [ "GSM1046", "GSM1055" ], "type": "temperature", "id": "GDS111_7" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS111", "version": 1.0, "instances": "8", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS111.tab", "compression": "gz" } ], [ [ "GDS1110.tab" ], { "title": "Patched heterozygous model of medulloblastoma", "description": "Analysis of granule cell precursors, pre-neoplastic cells, and tumor cells obtained from 7 day old, 6 week old, and 10 to 25 week old patched heterozygous animals, respectively. Results provide insight into the mechanisms of pathogenesis of medulloblastoma at the early stage.", "type": "Expression profiling by array", "pubmed_id": "15843415", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2426", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1110", "description": "granule cell precursor", "sample_id": [ "GSM45612", "GSM45613", "GSM45616", "GSM45617" ], "type": "cell type", "id": "GDS1110_1" }, { "dataset_id": "GDS1110", "description": "pre-neoplastic cell", "sample_id": [ "GSM45618", "GSM45619", "GSM45620", "GSM45621", "GSM45622" ], "type": "cell type", "id": "GDS1110_2" }, { "dataset_id": "GDS1110", "description": "tumor cell", "sample_id": [ "GSM45623", "GSM45624", "GSM45625", "GSM45626", "GSM45627" ], "type": "cell type", "id": "GDS1110_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1110", "version": 1.0, "instances": "14", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1110.tab", "compression": "gz" } ], [ [ "GDS1111.tab" ], { "title": "RNA binding protein HuD overexpression effect on hippocampus", "description": "Analysis of hippocampus of 60 day old C57BL/6 males overexpressing the RNA binding protein HuD. HuD overexpressor mice exhibit learning deficits and abnormalities in prepulse inhibition.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2005", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1111", "description": "control", "sample_id": [ "GSM36008", "GSM36009", "GSM36010" ], "type": "genotype/variation", "id": "GDS1111_1" }, { "dataset_id": "GDS1111", "description": "HuD overexpression", "sample_id": [ "GSM36005", "GSM36006", "GSM36007" ], "type": "genotype/variation", "id": "GDS1111_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1111", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1111.tab", "compression": "gz" } ], [ [ "GDS1112.tab" ], { "title": "Glaucomatous astrocytes from the optic nerve head", "description": "Expression profiling of astrocytes taken from the optic nerve head (ONH) of patients with glaucoma. The ONH is the site of damage in glaucomatous optic neuropathy. Studies suggest that damage in glaucoma is mediated by reactive astrocytes.", "type": "Expression profiling by array", "pubmed_id": [ "11921203", "18822132" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE2378", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1112", "description": "glaucoma", "sample_id": [ "GSM44908", "GSM44909", "GSM44910", "GSM44938", "GSM44939", "GSM44940", "GSM44941" ], "type": "disease state", "id": "GDS1112_1" }, { "dataset_id": "GDS1112", "description": "normal", "sample_id": [ "GSM44911", "GSM44912", "GSM44913", "GSM44942", "GSM44943", "GSM44944" ], "type": "disease state", "id": "GDS1112_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1112", "version": 1.0, "instances": "13", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1112.tab", "compression": "gz" } ], [ [ "GDS1113.tab" ], { "title": "CD4+ T cells expressing transcription factor Foxp3 and various amounts of CD25", "description": "Analysis of CD4+/CD25lo, CD4+/CD25+, and CD4+/CD25hi T cells expressing the forkhead transcription factor Foxp3. FACS used to sort CD4+ cells based on Foxp3 GFP fusion protein and CD25 expression. Results provide insight into the role of Foxp3 in regulatory T cell development and function.", "type": "Expression profiling by array", "pubmed_id": "15780990", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2389", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1113", "description": "control", "sample_id": [ "GSM44979", "GSM44982" ], "type": "genotype/variation", "id": "GDS1113_1" }, { "dataset_id": "GDS1113", "description": "Foxp3 knock-in", "sample_id": [ "GSM44980", "GSM44981" ], "type": "genotype/variation", "id": "GDS1113_2" }, { "dataset_id": "GDS1113", "description": "CD4plus CD25minus", "sample_id": [ "GSM44979" ], "type": "cell type", "id": "GDS1113_3" }, { "dataset_id": "GDS1113", "description": "CD4plus CD25plus", "sample_id": [ "GSM44982" ], "type": "cell type", "id": "GDS1113_4" }, { "dataset_id": "GDS1113", "description": "CD4plus CD25hi", "sample_id": [ "GSM44980" ], "type": "cell type", "id": "GDS1113_5" }, { "dataset_id": "GDS1113", "description": "CD4plus CD25lo", "sample_id": [ "GSM44981" ], "type": "cell type", "id": "GDS1113_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1113", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1113.tab", "compression": "gz" } ], [ [ "GDS1115.tab" ], { "title": "Genetic variation in gene expression among parents and progenies", "description": "Expression profiling of parental strains and haploid progenies from a cross of strain BY4716 and the wild wine strain RM11-1a. Results used to find linkage between gene expression levels, which are treated as quantitative traits, and genetic markers.", "type": "Expression profiling by array", "pubmed_id": [ "16035920", "15659551", "16079846" ], "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "131", "value_type": "log ratio", "reference_series": "GSE1990", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1115", "description": "BY4716 parental", "sample_id": [ "GSM35588", "GSM35590", "GSM35592", "GSM35594", "GSM35596", "GSM35598" ], "type": "strain", "id": "GDS1115_1" }, { "dataset_id": "GDS1115", "description": "RM11-1a parental", "sample_id": [ "GSM35600", "GSM35602", "GSM35604", "GSM35606", "GSM35608", "GSM35610", "GSM35612", "GSM35614", "GSM35616", "GSM35618", "GSM35620", "GSM35622" ], "type": "strain", "id": "GDS1115_2" }, { "dataset_id": "GDS1115", "description": "progeny", "sample_id": [ "GSM35624", "GSM35630", "GSM35636", "GSM35628", "GSM35634", "GSM35640", "GSM35626", "GSM35632", "GSM35638", "GSM61980", "GSM61986", "GSM61992", "GSM61998", "GSM62004", "GSM62010", "GSM62016", "GSM62022", "GSM62028", "GSM62034", "GSM62040", "GSM62046", "GSM62052", "GSM62058", "GSM62064", "GSM62070", "GSM62076", "GSM62082", "GSM62088", "GSM62094", "GSM62100", "GSM62106", "GSM62112", "GSM62118", "GSM62124", "GSM62130", "GSM62136", "GSM62142", "GSM62148", "GSM62154", "GSM62160", "GSM62166", "GSM62172", "GSM62178", "GSM62184", "GSM61982", "GSM61988", "GSM61994", "GSM62000", "GSM62006", "GSM62012", "GSM62018", "GSM62024", "GSM62030", "GSM62036", "GSM62042", "GSM62048", "GSM62054", "GSM62060", "GSM62066", "GSM62072", "GSM62078", "GSM62084", "GSM62090", "GSM62096", "GSM62102", "GSM62108", "GSM62114", "GSM62120", "GSM62126", "GSM62132", "GSM62138", "GSM62144", "GSM62150", "GSM62156", "GSM62162", "GSM62168", "GSM62174", "GSM62180", "GSM62186", "GSM61984", "GSM61990", "GSM61996", "GSM62002", "GSM62008", "GSM62014", "GSM62020", "GSM62026", "GSM62032", "GSM62038", "GSM62044", "GSM62050", "GSM62056", "GSM62062", "GSM62068", "GSM62074", "GSM62080", "GSM62086", "GSM62092", "GSM62098", "GSM62104", "GSM62110", "GSM62116", "GSM62122", "GSM62128", "GSM62134", "GSM62140", "GSM62146", "GSM62152", "GSM62158", "GSM62164", "GSM62170", "GSM62176", "GSM62182" ], "type": "strain", "id": "GDS1115_3" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS1115", "version": 1.0, "instances": "131", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1115.tab", "compression": "gz" } ], [ [ "GDS1116.tab" ], { "title": "Genetic variation in gene expression among parents and progenies (dye-swap)", "description": "Expression profiling of parental strains and haploid progenies from a cross of strain BY4716 and the wild wine strain RM11-1a. Results used to find linkage between gene expression levels, which are treated as quantitative traits, and genetic markers.", "type": "Expression profiling by array", "pubmed_id": [ "16035920", "15659551", "16079846" ], "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "131", "value_type": "log ratio", "reference_series": "GSE1990", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1116", "description": "BY4706 parental", "sample_id": [ "GSM35589", "GSM35591", "GSM35593", "GSM35595", "GSM35597", "GSM35599" ], "type": "strain", "id": "GDS1116_1" }, { "dataset_id": "GDS1116", "description": "RM11-1a parental", "sample_id": [ "GSM35601", "GSM35603", "GSM35605", "GSM35607", "GSM35609", "GSM35611", "GSM35613", "GSM35615", "GSM35617", "GSM35619", "GSM35621", "GSM35623" ], "type": "strain", "id": "GDS1116_2" }, { "dataset_id": "GDS1116", "description": "progeny", "sample_id": [ "GSM35625", "GSM35627", "GSM35629", "GSM35631", "GSM35633", "GSM35635", "GSM35637", "GSM35639", "GSM35641", "GSM61981", "GSM61987", "GSM61993", "GSM61999", "GSM62005", "GSM62011", "GSM62017", "GSM62023", "GSM62029", "GSM62035", "GSM62041", "GSM62047", "GSM62053", "GSM62059", "GSM62065", "GSM62071", "GSM62077", "GSM62083", "GSM62089", "GSM62095", "GSM62101", "GSM62107", "GSM62113", "GSM62119", "GSM62125", "GSM62131", "GSM62137", "GSM62143", "GSM62149", "GSM62155", "GSM62161", "GSM62167", "GSM62173", "GSM62179", "GSM62185", "GSM61983", "GSM61989", "GSM61995", "GSM62001", "GSM62007", "GSM62013", "GSM62019", "GSM62025", "GSM62031", "GSM62037", "GSM62043", "GSM62049", "GSM62055", "GSM62061", "GSM62067", "GSM62073", "GSM62079", "GSM62085", "GSM62091", "GSM62097", "GSM62103", "GSM62109", "GSM62115", "GSM62121", "GSM62127", "GSM62133", "GSM62139", "GSM62145", "GSM62151", "GSM62157", "GSM62163", "GSM62169", "GSM62175", "GSM62181", "GSM62187", "GSM61985", "GSM61991", "GSM61997", "GSM62003", "GSM62009", "GSM62015", "GSM62021", "GSM62027", "GSM62033", "GSM62039", "GSM62045", "GSM62051", "GSM62057", "GSM62063", "GSM62069", "GSM62075", "GSM62081", "GSM62087", "GSM62093", "GSM62099", "GSM62105", "GSM62111", "GSM62117", "GSM62123", "GSM62129", "GSM62135", "GSM62141", "GSM62147", "GSM62153", "GSM62159", "GSM62165", "GSM62171", "GSM62177", "GSM62183" ], "type": "strain", "id": "GDS1116_3" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS1116", "version": 1.0, "instances": "131", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1116.tab", "compression": "gz" } ], [ [ "GDS112.tab" ], { "title": "Heat shock from 30\u00b0C to 37\u00b0C time course", "description": "Cultures shifted from 30\u00b0C to 37\u00b0C and samples collected at 0, 5, 15, 30 and 60 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL54", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS112", "description": "0 minute", "sample_id": [ "GSM1029" ], "type": "time", "id": "GDS112_1" }, { "dataset_id": "GDS112", "description": "5 minute", "sample_id": [ "GSM1030" ], "type": "time", "id": "GDS112_2" }, { "dataset_id": "GDS112", "description": "15 minute", "sample_id": [ "GSM1032" ], "type": "time", "id": "GDS112_3" }, { "dataset_id": "GDS112", "description": "30 minute", "sample_id": [ "GSM1033" ], "type": "time", "id": "GDS112_4" }, { "dataset_id": "GDS112", "description": "60 minute", "sample_id": [ "GSM1034" ], "type": "time", "id": "GDS112_5" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS112", "version": 1.0, "instances": "5", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS112.tab", "compression": "gz" } ], [ [ "GDS113.tab" ], { "title": "Dithiothrietol exposure time course (y14)", "description": "2.5 mM dithiothrietol (DTT) added to culture and samples collected at several time points up to 480 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL54", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS113", "description": "0 minute", "sample_id": [ "GSM1048" ], "type": "time", "id": "GDS113_1" }, { "dataset_id": "GDS113", "description": "15 minute", "sample_id": [ "GSM1049" ], "type": "time", "id": "GDS113_2" }, { "dataset_id": "GDS113", "description": "30 minute", "sample_id": [ "GSM1050" ], "type": "time", "id": "GDS113_3" }, { "dataset_id": "GDS113", "description": "60 minute", "sample_id": [ "GSM1051" ], "type": "time", "id": "GDS113_4" }, { "dataset_id": "GDS113", "description": "120 minute", "sample_id": [ "GSM1052" ], "type": "time", "id": "GDS113_5" }, { "dataset_id": "GDS113", "description": "240 minute", "sample_id": [ "GSM1053" ], "type": "time", "id": "GDS113_6" }, { "dataset_id": "GDS113", "description": "480 minute", "sample_id": [ "GSM1054" ], "type": "time", "id": "GDS113_7" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS113", "version": 1.0, "instances": "7", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS113.tab", "compression": "gz" } ], [ [ "GDS115.tab" ], { "title": "Amino acid and adenine starvation time course", "description": "Cells grown in minimal medium lacking amino acids and adenine. Samples taken at 0, 0.5, 1, 2, 4 and 6 hours. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL54", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS115", "description": "0.5 hour", "sample_id": [ "GSM1075" ], "type": "time", "id": "GDS115_1" }, { "dataset_id": "GDS115", "description": "1 hour", "sample_id": [ "GSM1076" ], "type": "time", "id": "GDS115_2" }, { "dataset_id": "GDS115", "description": "2 hour", "sample_id": [ "GSM1090" ], "type": "time", "id": "GDS115_3" }, { "dataset_id": "GDS115", "description": "4 hour", "sample_id": [ "GSM1077" ], "type": "time", "id": "GDS115_4" }, { "dataset_id": "GDS115", "description": "6 hour", "sample_id": [ "GSM1078" ], "type": "time", "id": "GDS115_5" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS115", "version": 1.0, "instances": "5", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS115.tab", "compression": "gz" } ], [ [ "GDS12.tab" ], { "title": "Bone marrow stromal cell lines", "description": "Examination of two functionally distinct human bone marrow stromal cell lines, HS-27a and HS-5. Four independent RNA samples from each cell line analyzed.", "type": "Expression profiling by array", "pubmed_id": "12184274", "platform": "GPL44", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "17588", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE463", "order": "none", "update_date": "Jun 25 2003", "subsets": [ { "dataset_id": "GDS12", "description": "HS-5", "sample_id": [ "GSM834", "GSM835", "GSM836", "GSM837" ], "type": "cell line", "id": "GDS12_1" }, { "dataset_id": "GDS12", "description": "HS-27a", "sample_id": [ "GSM838", "GSM839", "GSM840", "GSM841" ], "type": "cell line", "id": "GDS12_2" } ], "taxid": "9606", "genes": 16036, "aggregation_function": "mean", "name": "GDS12", "version": 1.0, "instances": "8", "variables": 16038, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS12.tab", "compression": "gz" } ], [ [ "GDS1204.tab" ], { "title": "Lung cancer cell line response to motexafin gadolinium: time course", "description": "Expression profiling of lung cancer cell line A549 following treatment with 50 uM of the metal cation-containing chemotherapeutic drug motexafin gadolinium (MGd). Cells examined at 4, 12, and 24 hours following treatment. Results provide insight into the mechanism of action of MGd.", "type": "Expression profiling by array", "pubmed_id": "15867382", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2189", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1204", "description": "control", "sample_id": [ "GSM39804", "GSM39805", "GSM39806", "GSM39810", "GSM39811", "GSM39812", "GSM39816", "GSM39817", "GSM39818" ], "type": "agent", "id": "GDS1204_1" }, { "dataset_id": "GDS1204", "description": "motexafin gadolinium", "sample_id": [ "GSM39801", "GSM39802", "GSM39803", "GSM39807", "GSM39808", "GSM39809", "GSM39813", "GSM39814", "GSM39815" ], "type": "agent", "id": "GDS1204_2" }, { "dataset_id": "GDS1204", "description": "4 h", "sample_id": [ "GSM39801", "GSM39802", "GSM39803", "GSM39804", "GSM39805", "GSM39806" ], "type": "time", "id": "GDS1204_3" }, { "dataset_id": "GDS1204", "description": "12 h", "sample_id": [ "GSM39807", "GSM39808", "GSM39809", "GSM39810", "GSM39811", "GSM39812" ], "type": "time", "id": "GDS1204_4" }, { "dataset_id": "GDS1204", "description": "24 h", "sample_id": [ "GSM39813", "GSM39814", "GSM39815", "GSM39816", "GSM39817", "GSM39818" ], "type": "time", "id": "GDS1204_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1204", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1204.tab", "compression": "gz" } ], [ [ "GDS1205.tab" ], { "title": "Ssl1 mutant for a subunit of TFIIH response to methyl methanesulfonate", "description": "Analysis of Ssl1 mutant for a subunit of TFIIH treated with methyl methanesulfonate (MMS). Ssl1 mutant contains C406A substitution and is sensitive to DNA damaging agents such as MMS. Results provide insight into the relationship between transcription and DNA repair.", "type": "Expression profiling by array", "pubmed_id": "15837426", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2343", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1205", "description": "wild type", "sample_id": [ "GSM43898", "GSM43899", "GSM43903", "GSM43904" ], "type": "genotype/variation", "id": "GDS1205_1" }, { "dataset_id": "GDS1205", "description": "ssl1 mutant", "sample_id": [ "GSM43900", "GSM43901", "GSM43902", "GSM43905", "GSM43906", "GSM43907", "GSM43908", "GSM43909" ], "type": "genotype/variation", "id": "GDS1205_2" }, { "dataset_id": "GDS1205", "description": "control", "sample_id": [ "GSM43898", "GSM43901", "GSM43904", "GSM43905", "GSM43906", "GSM43908" ], "type": "agent", "id": "GDS1205_3" }, { "dataset_id": "GDS1205", "description": "MMS", "sample_id": [ "GSM43899", "GSM43900", "GSM43902", "GSM43903", "GSM43907", "GSM43909" ], "type": "agent", "id": "GDS1205_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1205", "version": 1.0, "instances": "12", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1205.tab", "compression": "gz" } ], [ [ "GDS1209.tab" ], { "title": "Sarcoma and hypoxia", "description": "Expression profiling of soft tissue sarcoma samples. Hypoxic regions often develop in tumors as they increase in size. Results provide insight into the expression of hypoxia-related genes in sarcomas.", "type": "Expression profiling by array", "pubmed_id": [ "15994966", "16603191" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE2719", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1209", "description": "normal", "sample_id": [ "GSM52556", "GSM52557", "GSM52558", "GSM52559", "GSM52560", "GSM52561", "GSM52562", "GSM52563", "GSM52564", "GSM52565", "GSM52566", "GSM52567", "GSM52568", "GSM52569", "GSM52570" ], "type": "disease state", "id": "GDS1209_1" }, { "dataset_id": "GDS1209", "description": "sarcoma", "sample_id": [ "GSM52571", "GSM52572", "GSM52573", "GSM52574", "GSM52575", "GSM52576", "GSM52577", "GSM52578", "GSM52579", "GSM52580", "GSM52581", "GSM52582", "GSM52583", "GSM52584", "GSM52585", "GSM52586", "GSM52587", "GSM52588", "GSM52589", "GSM52590", "GSM52591", "GSM52592", "GSM52593", "GSM52594", "GSM52595", "GSM52596", "GSM52597", "GSM52598", "GSM52599", "GSM52600", "GSM52601", "GSM52602", "GSM52603", "GSM52604", "GSM52605", "GSM52606", "GSM52607", "GSM52608", "GSM52609" ], "type": "disease state", "id": "GDS1209_2" }, { "dataset_id": "GDS1209", "description": "brain", "sample_id": [ "GSM52556" ], "type": "tissue", "id": "GDS1209_3" }, { "dataset_id": "GDS1209", "description": "stomach", "sample_id": [ "GSM52557" ], "type": "tissue", "id": "GDS1209_4" }, { "dataset_id": "GDS1209", "description": "colon", "sample_id": [ "GSM52558" ], "type": "tissue", "id": "GDS1209_5" }, { "dataset_id": "GDS1209", "description": "pancreas", "sample_id": [ "GSM52559" ], "type": "tissue", "id": "GDS1209_6" }, { "dataset_id": "GDS1209", "description": "prostate", "sample_id": [ "GSM52560" ], "type": "tissue", "id": "GDS1209_7" }, { "dataset_id": "GDS1209", "description": "skin", "sample_id": [ "GSM52561" ], "type": "tissue", "id": "GDS1209_8" }, { "dataset_id": "GDS1209", "description": "small intestine", "sample_id": [ "GSM52562" ], "type": "tissue", "id": "GDS1209_9" }, { "dataset_id": "GDS1209", "description": "adrenal gland", "sample_id": [ "GSM52563" ], "type": "tissue", "id": "GDS1209_10" }, { "dataset_id": "GDS1209", "description": "connective", "sample_id": [ "GSM52564" ], "type": "tissue", "id": "GDS1209_11" }, { "dataset_id": "GDS1209", "description": "heart", "sample_id": [ "GSM52565" ], "type": "tissue", "id": "GDS1209_12" }, { "dataset_id": "GDS1209", "description": "kidney", "sample_id": [ "GSM52566" ], "type": "tissue", "id": "GDS1209_13" }, { "dataset_id": "GDS1209", "description": "liver", "sample_id": [ "GSM52567" ], "type": "tissue", "id": "GDS1209_14" }, { "dataset_id": "GDS1209", "description": "lung", "sample_id": [ "GSM52568" ], "type": "tissue", "id": "GDS1209_15" }, { "dataset_id": "GDS1209", "description": "skeletal muscle", "sample_id": [ "GSM52569" ], "type": "tissue", "id": "GDS1209_16" }, { "dataset_id": "GDS1209", "description": "spleen", "sample_id": [ "GSM52570" ], "type": "tissue", "id": "GDS1209_17" }, { "dataset_id": "GDS1209", "description": "fibrosarcoma", "sample_id": [ "GSM52571", "GSM52572", "GSM52573", "GSM52574", "GSM52575", "GSM52576", "GSM52577" ], "type": "tissue", "id": "GDS1209_18" }, { "dataset_id": "GDS1209", "description": "gastrointestinal stromal", "sample_id": [ "GSM52578", "GSM52579" ], "type": "tissue", "id": "GDS1209_19" }, { "dataset_id": "GDS1209", "description": "leiomyosarcoma", "sample_id": [ "GSM52580", "GSM52581", "GSM52582", "GSM52583", "GSM52584", "GSM52585" ], "type": "tissue", "id": "GDS1209_20" }, { "dataset_id": "GDS1209", "description": "dedifferentiated liposarcoma", "sample_id": [ "GSM52586", "GSM52587", "GSM52588", "GSM52589" ], "type": "tissue", "id": "GDS1209_21" }, { "dataset_id": "GDS1209", "description": "pleomorphic liposarcoma", "sample_id": [ "GSM52590", "GSM52591", "GSM52592" ], "type": "tissue", "id": "GDS1209_22" }, { "dataset_id": "GDS1209", "description": "malignant fibrous histiocytoma", "sample_id": [ "GSM52593", "GSM52594", "GSM52595", "GSM52596", "GSM52597", "GSM52598", "GSM52599", "GSM52600", "GSM52601" ], "type": "tissue", "id": "GDS1209_23" }, { "dataset_id": "GDS1209", "description": "round cell", "sample_id": [ "GSM52602", "GSM52603", "GSM52604", "GSM52605" ], "type": "tissue", "id": "GDS1209_24" }, { "dataset_id": "GDS1209", "description": "synovial", "sample_id": [ "GSM52606", "GSM52607", "GSM52608", "GSM52609" ], "type": "tissue", "id": "GDS1209_25" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1209", "version": 1.0, "instances": "54", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1209.tab", "compression": "gz" } ], [ [ "GDS1210.tab" ], { "title": "Gastric cancer", "description": "Expression profiling of 22 primary advanced gastric cancer tissues. Whole gastric cancer tissues examined in the presence of metastasis and according to histological type. Results provide insight into the progression and diversity of gastric cancer.", "type": "Expression profiling by array", "pubmed_id": "11782383", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE2685", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1210", "description": "normal", "sample_id": [ "GSM51763", "GSM51764", "GSM51765", "GSM51766", "GSM51767", "GSM51768", "GSM51769", "GSM51770" ], "type": "disease state", "id": "GDS1210_1" }, { "dataset_id": "GDS1210", "description": "cancer", "sample_id": [ "GSM51771", "GSM51772", "GSM51773", "GSM51774", "GSM51775", "GSM51776", "GSM51777", "GSM51778", "GSM51779", "GSM51780", "GSM51781", "GSM51782", "GSM51783", "GSM51784", "GSM51785", "GSM51786", "GSM51787", "GSM51788", "GSM51789", "GSM51790", "GSM51791", "GSM51792" ], "type": "disease state", "id": "GDS1210_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS1210", "version": 1.0, "instances": "30", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1210.tab", "compression": "gz" } ], [ [ "GDS1211.tab" ], { "title": "mTert overexpression", "description": "Expression profiling of embryonic fibroblasts overexpressing mTert, the catalytic subunit of telomerase. Results identify potential downstream targets of telomerase.", "type": "Expression profiling by array", "pubmed_id": "16501597", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2684", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1211", "description": "control", "sample_id": [ "GSM51913", "GSM51914" ], "type": "agent", "id": "GDS1211_1" }, { "dataset_id": "GDS1211", "description": "mTert", "sample_id": [ "GSM51915", "GSM51916" ], "type": "agent", "id": "GDS1211_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1211", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1211.tab", "compression": "gz" } ], [ [ "GDS1212.tab" ], { "title": "Tumor necrosis factor effect in the absence of NF-kappaB activity: time course", "description": "Temporal analysis of the effect of tumor necrosis factor (TNF) on gene expression in HeLa cells with NF-kappaB inactivated. NF-kappaB inactivated with 2 ug/ml doxycycline. Cells examined at various time points following stimulation with 25 ng/ml TNF. Results identify potential targets of NF-kappaB.", "type": "Expression profiling by array", "pubmed_id": "15722553", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE2624", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1212", "description": "control", "sample_id": [ "GSM50270", "GSM50297", "GSM50298", "GSM50299", "GSM50306", "GSM50308", "GSM50309", "GSM50315", "GSM50316", "GSM50317", "GSM50318", "GSM50323", "GSM50324", "GSM50325", "GSM50326", "GSM50331" ], "type": "agent", "id": "GDS1212_1" }, { "dataset_id": "GDS1212", "description": "doxycycline", "sample_id": [ "GSM50301", "GSM50302", "GSM50304", "GSM50305", "GSM50310", "GSM50312", "GSM50313", "GSM50314", "GSM50319", "GSM50320", "GSM50321", "GSM50322", "GSM50327", "GSM50328", "GSM50329", "GSM50330" ], "type": "agent", "id": "GDS1212_2" }, { "dataset_id": "GDS1212", "description": "0 h TNF", "sample_id": [ "GSM50270", "GSM50301", "GSM50306", "GSM50310", "GSM50315", "GSM50319", "GSM50323", "GSM50327", "GSM50331" ], "type": "time", "id": "GDS1212_3" }, { "dataset_id": "GDS1212", "description": "1 h TNF", "sample_id": [ "GSM50297", "GSM50302", "GSM50308", "GSM50312", "GSM50316", "GSM50320", "GSM50324", "GSM50328" ], "type": "time", "id": "GDS1212_4" }, { "dataset_id": "GDS1212", "description": "3 h TNF", "sample_id": [ "GSM50298", "GSM50299", "GSM50304", "GSM50313", "GSM50317", "GSM50321", "GSM50325", "GSM50329" ], "type": "time", "id": "GDS1212_5" }, { "dataset_id": "GDS1212", "description": "6 h TNF", "sample_id": [ "GSM50305", "GSM50309", "GSM50314", "GSM50318", "GSM50322", "GSM50326", "GSM50330" ], "type": "time", "id": "GDS1212_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1212", "version": 1.0, "instances": "32", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1212.tab", "compression": "gz" } ], [ [ "GDS1213.tab" ], { "title": "Intermittent hypoxia effect on liver", "description": "Examination of chronic intermittent hypoxia (CIH) effect on liver gene expression in leptin deficient (ob/ob) mice. CIH in the presence of pre-existent obesity may cause an increase in gene expression of enzymes of lipid biosynthesis. CIH is a component of obstructive sleep apnea (OSA).", "type": "Expression profiling by array", "pubmed_id": "16037401", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE1873", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1213", "description": "intermittent air", "sample_id": [ "GSM32860", "GSM32861", "GSM32862", "GSM32863", "GSM32864" ], "type": "stress", "id": "GDS1213_1" }, { "dataset_id": "GDS1213", "description": "intermittent hypoxia", "sample_id": [ "GSM32865", "GSM32866", "GSM32867", "GSM32868", "GSM32869" ], "type": "stress", "id": "GDS1213_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1213", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1213.tab", "compression": "gz" } ], [ [ "GDS1214.tab" ], { "title": "rnt1 null mutant expression profile", "description": "Expression profiling of isogenic strains lacking Rnt1p, a member of the RNase III family of double-stranded RNA endonucleases. Results identify potential Rnt1p mRNA targets.", "type": "Expression profiling by array", "pubmed_id": "15989963", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2683", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1214", "description": "wild type", "sample_id": [ "GSM51901", "GSM51902", "GSM51903", "GSM51904", "GSM51905" ], "type": "genotype/variation", "id": "GDS1214_1" }, { "dataset_id": "GDS1214", "description": "rnt1 knockout", "sample_id": [ "GSM51906", "GSM51907", "GSM51908", "GSM51909" ], "type": "genotype/variation", "id": "GDS1214_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1214", "version": 1.0, "instances": "9", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1214.tab", "compression": "gz" } ], [ [ "GDS1215.tab" ], { "title": "Acute myeloblastic leukemia cells response to all trans retinoic acid and valproic acid", "description": "Analysis of acute myeloblastic leukemia (AML) cell line, OCI/AML-2, following treatment with valproic acid (VPA) and all trans retinoic acid (ATRA). VPA inhibits histone deacetylase. Results provide insight into the responsiveness of AML cells to ATRA when VPA is present.", "type": "Expression profiling by array", "pubmed_id": "15902297", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2668", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1215", "description": "control", "sample_id": [ "GSM51462" ], "type": "agent", "id": "GDS1215_1" }, { "dataset_id": "GDS1215", "description": "ATRA", "sample_id": [ "GSM51463" ], "type": "agent", "id": "GDS1215_2" }, { "dataset_id": "GDS1215", "description": "VPA", "sample_id": [ "GSM51464" ], "type": "agent", "id": "GDS1215_3" }, { "dataset_id": "GDS1215", "description": "ATRA and VPA", "sample_id": [ "GSM51500" ], "type": "agent", "id": "GDS1215_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1215", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1215.tab", "compression": "gz" } ], [ [ "GDS1219.tab" ], { "title": "Insulin receptor substrate inactivation effect on brown preadipocytes", "description": "Expression profiling of brown preadipocytes derived from insulin receptor substrate (IRS) knockout animals.The IRS family of insulin signaling mediators is composed of IRS-1, IRS-2, IRS-3, and IRS-4. Results provide insight into the regulation of brown adipocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "15895078", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE2556", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1219", "description": "wild type", "sample_id": [ "GSM48670", "GSM48673", "GSM48674", "GSM48675", "GSM48676", "GSM48677", "GSM48678", "GSM48679", "GSM48680", "GSM48862", "GSM48893", "GSM48894" ], "type": "genotype/variation", "id": "GDS1219_1" }, { "dataset_id": "GDS1219", "description": "IRS-1 knockout", "sample_id": [ "GSM48895", "GSM48896", "GSM48897", "GSM48898" ], "type": "genotype/variation", "id": "GDS1219_2" }, { "dataset_id": "GDS1219", "description": "IRS-2 knockout", "sample_id": [ "GSM48899", "GSM48900", "GSM48901", "GSM48902" ], "type": "genotype/variation", "id": "GDS1219_3" }, { "dataset_id": "GDS1219", "description": "IRS-3 knockout", "sample_id": [ "GSM48903", "GSM48904", "GSM48905", "GSM48906" ], "type": "genotype/variation", "id": "GDS1219_4" }, { "dataset_id": "GDS1219", "description": "IRS-4 knockout", "sample_id": [ "GSM48907", "GSM48908", "GSM48909", "GSM48910" ], "type": "genotype/variation", "id": "GDS1219_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1219", "version": 1.0, "instances": "28", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1219.tab", "compression": "gz" } ], [ [ "GDS1220.tab" ], { "title": "Malignant pleural mesothelioma", "description": "Expression profiling of malignant pleural mesothelioma (MPM) tumors. MPM is a highly lethal malignancy associated with asbestos exposure. Results provide insight into the pathogenesis of MPM.", "type": "Expression profiling by array", "pubmed_id": "15920167", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE2549", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1220", "description": "normal", "sample_id": [ "GSM49604", "GSM49605", "GSM49606", "GSM49607", "GSM49608", "GSM49609", "GSM49610", "GSM49611", "GSM49612", "GSM49613" ], "type": "disease state", "id": "GDS1220_1" }, { "dataset_id": "GDS1220", "description": "malignant pleural mesothelioma", "sample_id": [ "GSM49564", "GSM49565", "GSM49566", "GSM49567", "GSM49568", "GSM49569", "GSM49570", "GSM49571", "GSM49572", "GSM49573", "GSM49574", "GSM49575", "GSM49576", "GSM49577", "GSM49578", "GSM49579", "GSM49580", "GSM49581", "GSM49582", "GSM49583", "GSM49584", "GSM49585", "GSM49586", "GSM49587", "GSM49588", "GSM49589", "GSM49590", "GSM49591", "GSM49592", "GSM49593", "GSM49594", "GSM49595", "GSM49596", "GSM49597", "GSM49598", "GSM49599", "GSM49600", "GSM49601", "GSM49602", "GSM49603", "GSM49614", "GSM49615", "GSM49616", "GSM49617" ], "type": "disease state", "id": "GDS1220_2" }, { "dataset_id": "GDS1220", "description": "mesothelial cell line", "sample_id": [ "GSM49613", "GSM49614", "GSM49615", "GSM49616", "GSM49617" ], "type": "cell type", "id": "GDS1220_3" }, { "dataset_id": "GDS1220", "description": "pleural", "sample_id": [ "GSM49564", "GSM49565", "GSM49566", "GSM49567", "GSM49568", "GSM49569", "GSM49570", "GSM49571", "GSM49572", "GSM49573", "GSM49574", "GSM49575", "GSM49576", "GSM49577", "GSM49578", "GSM49579", "GSM49580", "GSM49581", "GSM49582", "GSM49583", "GSM49584", "GSM49585", "GSM49586", "GSM49587", "GSM49588", "GSM49589", "GSM49590", "GSM49591", "GSM49592", "GSM49593", "GSM49594", "GSM49595", "GSM49596", "GSM49597", "GSM49598", "GSM49599", "GSM49600", "GSM49601", "GSM49602", "GSM49603", "GSM49604", "GSM49605", "GSM49606", "GSM49607", "GSM49608" ], "type": "cell type", "id": "GDS1220_4" }, { "dataset_id": "GDS1220", "description": "lung", "sample_id": [ "GSM49609", "GSM49610", "GSM49611", "GSM49612" ], "type": "cell type", "id": "GDS1220_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1220", "version": 1.0, "instances": "54", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1220.tab", "compression": "gz" } ], [ [ "GDS1221.tab" ], { "title": "Chronic myelogenous leukemia response to imatinib", "description": "Analysis of peripheral blood and bone marrow of chronic myelogenous leukemia (CML) patients prior to imatinib (Gleevec) treatment. Imatinib induces complete cytogenetic response (CCR) in most CML patients. This study attempts to determine transcriptional signature of imatinib non-responders.", "type": "Expression profiling by array", "pubmed_id": "15820940", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE2535", "order": "none", "update_date": "Nov 06 2005", "subsets": [ { "dataset_id": "GDS1221", "description": "responds to imatinib", "sample_id": [ "GSM48359", "GSM48360", "GSM48361", "GSM48362", "GSM48363", "GSM48364", "GSM48365", "GSM48366", "GSM48374", "GSM48375", "GSM48376", "GSM48377", "GSM48378", "GSM48379", "GSM48380", "GSM48381" ], "type": "other", "id": "GDS1221_1" }, { "dataset_id": "GDS1221", "description": "does not respond to imatinib", "sample_id": [ "GSM48354", "GSM48355", "GSM48356", "GSM48357", "GSM48358", "GSM48367", "GSM48368", "GSM48369", "GSM48370", "GSM48371", "GSM48372", "GSM48373" ], "type": "other", "id": "GDS1221_2" }, { "dataset_id": "GDS1221", "description": "peripheral blood", "sample_id": [ "GSM48354", "GSM48357", "GSM48358", "GSM48365", "GSM48366", "GSM48368", "GSM48369", "GSM48370", "GSM48372", "GSM48374", "GSM48375", "GSM48376", "GSM48377", "GSM48378", "GSM48380", "GSM48381" ], "type": "cell type", "id": "GDS1221_3" }, { "dataset_id": "GDS1221", "description": "bone marrow", "sample_id": [ "GSM48355", "GSM48356", "GSM48359", "GSM48360", "GSM48361", "GSM48362", "GSM48363", "GSM48364", "GSM48367", "GSM48371", "GSM48373", "GSM48379" ], "type": "cell type", "id": "GDS1221_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1221", "version": 1.0, "instances": "28", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1221.tab", "compression": "gz" } ], [ [ "GDS1222.tab" ], { "title": "Mammary tumorigenesis in MMTV-neu model", "description": "Analysis of cancer progression by profiling of preneoplastic mammary glands and tumors of MMTV-neu animals. Activated neu allele placed under the control of mammary tumor virus promoter to enable mammary specific expression. Results provide insight into the early events of Neu induced tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "15897883", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2528", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1222", "description": "wild type", "sample_id": [ "GSM48242", "GSM48244", "GSM48245" ], "type": "genotype/variation", "id": "GDS1222_1" }, { "dataset_id": "GDS1222", "description": "MMTV-neu", "sample_id": [ "GSM48236", "GSM48237", "GSM48238", "GSM48239", "GSM48240", "GSM48241", "GSM48243", "GSM48246", "GSM48247", "GSM48248", "GSM48249" ], "type": "genotype/variation", "id": "GDS1222_2" }, { "dataset_id": "GDS1222", "description": "normal", "sample_id": [ "GSM48242", "GSM48244", "GSM48245" ], "type": "disease state", "id": "GDS1222_3" }, { "dataset_id": "GDS1222", "description": "preneoplastic", "sample_id": [ "GSM48246", "GSM48247", "GSM48248", "GSM48249" ], "type": "disease state", "id": "GDS1222_4" }, { "dataset_id": "GDS1222", "description": "tumor", "sample_id": [ "GSM48236", "GSM48237", "GSM48238", "GSM48239", "GSM48240", "GSM48241", "GSM48243" ], "type": "disease state", "id": "GDS1222_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1222", "version": 1.0, "instances": "14", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1222.tab", "compression": "gz" } ], [ [ "GDS1225.tab" ], { "title": "White adipose tissue remodeling: response to \u03b23-adrenergic receptor activation", "description": "Temporal analysis of epididymal white adipose tissue of 3-4 month old males treated with \u03b23-adrenergic receptor (Adrb3) agonist CL-316,243 for 0 to 6 days. Adrb3 agonists exert anti-diabetes and anti-obesity properties.", "type": "Expression profiling by array", "pubmed_id": "15941787", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2130", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1225", "description": "control", "sample_id": [ "GSM38570" ], "type": "time", "id": "GDS1225_1" }, { "dataset_id": "GDS1225", "description": "1 day", "sample_id": [ "GSM38582" ], "type": "time", "id": "GDS1225_2" }, { "dataset_id": "GDS1225", "description": "3 day", "sample_id": [ "GSM38583" ], "type": "time", "id": "GDS1225_3" }, { "dataset_id": "GDS1225", "description": "6 day", "sample_id": [ "GSM38584" ], "type": "time", "id": "GDS1225_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1225", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1225.tab", "compression": "gz" } ], [ [ "GDS1226.tab" ], { "title": "White adipose tissue remodeling: role of peroxisome proliferator-activated receptor alpha", "description": "Temporal analysis of epididymal white adipose tissue during remodeling induced by the \u03b23-adrenergic receptor (Adrb3) agonist CL-316,243 in peroxisome proliferator-activated receptor alpha (Ppara) knockouts. Ppara is upregulated by CL-316,243.", "type": "Expression profiling by array", "pubmed_id": "15941786", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2131", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1226", "description": "wild type", "sample_id": [ "GSM38591", "GSM38592", "GSM38593", "GSM38594" ], "type": "strain", "id": "GDS1226_1" }, { "dataset_id": "GDS1226", "description": "Ppara knockout", "sample_id": [ "GSM38596", "GSM38601", "GSM38602", "GSM38604" ], "type": "strain", "id": "GDS1226_2" }, { "dataset_id": "GDS1226", "description": "control", "sample_id": [ "GSM38591", "GSM38596" ], "type": "time", "id": "GDS1226_3" }, { "dataset_id": "GDS1226", "description": "8 hour", "sample_id": [ "GSM38592", "GSM38601" ], "type": "time", "id": "GDS1226_4" }, { "dataset_id": "GDS1226", "description": "3 day", "sample_id": [ "GSM38593", "GSM38602" ], "type": "time", "id": "GDS1226_5" }, { "dataset_id": "GDS1226", "description": "6 day", "sample_id": [ "GSM38594", "GSM38604" ], "type": "time", "id": "GDS1226_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1226", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1226.tab", "compression": "gz" } ], [ [ "GDS1227.tab" ], { "title": "Dietary supplement Boswellia serrata effects on liver", "description": "Hepatic gene expression analysis in Swiss-Webster mice fed diet supplemented with hexane or methanol extracts of Boswellia serrata for 21 days. Extracts from Boswellia serrata may have anti-inflammatory activity.", "type": "Expression profiling by array", "pubmed_id": "15539433", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1847", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1227", "description": "control diet", "sample_id": [ "GSM32467", "GSM32484" ], "type": "protocol", "id": "GDS1227_1" }, { "dataset_id": "GDS1227", "description": "Boswella hexane extract diet", "sample_id": [ "GSM32493", "GSM32494" ], "type": "protocol", "id": "GDS1227_2" }, { "dataset_id": "GDS1227", "description": "Boswella methanol extract diet", "sample_id": [ "GSM32495", "GSM32496" ], "type": "protocol", "id": "GDS1227_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1227", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1227.tab", "compression": "gz" } ], [ [ "GDS1228.tab" ], { "title": "Heart failure and nitric oxide", "description": "Analysis of hearts from 21 month old endothelial nitric oxide synthase (eNOS) knockout males. These animals exhibit cardiac dysfunction with age and 50% mortality at 21 month. Results provide clues to molecular mechanisms leading to heart failure.", "type": "Expression profiling by array", "pubmed_id": "15879487", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE1988", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1228", "description": "eNOS knockout", "sample_id": [ "GSM35542", "GSM35543", "GSM35561" ], "type": "strain", "id": "GDS1228_1" }, { "dataset_id": "GDS1228", "description": "wild type", "sample_id": [ "GSM35562", "GSM35563", "GSM35564", "GSM35566" ], "type": "strain", "id": "GDS1228_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1228", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1228.tab", "compression": "gz" } ], [ [ "GDS1230.tab" ], { "title": "Hematopoietic stem cell and progenitor cell comparison (HG-U133A)", "description": "Comparison of CD34+CD33-CD38-Rho(lo)c-kit+ cells, enriched for hematopoietic stem/progenitor cells (HSC), to CD34+CD33-CD38-Rho(hi) cells, enriched for committed hematopoietic progenitor cells (HPC). Cells obtained from umbilical cord blood and bone marrow. Provides insight into control of HSC fate.", "type": "Expression profiling by array", "pubmed_id": "16089502", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2666", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1230", "description": "umbilical cord blood", "sample_id": [ "GSM51391", "GSM51392", "GSM51393", "GSM51394", "GSM51395", "GSM51396", "GSM51397", "GSM51398", "GSM51399", "GSM51400" ], "type": "tissue", "id": "GDS1230_1" }, { "dataset_id": "GDS1230", "description": "bone marrow", "sample_id": [ "GSM51401", "GSM51402", "GSM51403", "GSM51404", "GSM51405", "GSM51406", "GSM51407", "GSM51408" ], "type": "tissue", "id": "GDS1230_2" }, { "dataset_id": "GDS1230", "description": "Rho lo", "sample_id": [ "GSM51392", "GSM51394", "GSM51396", "GSM51398", "GSM51400", "GSM51402", "GSM51404", "GSM51406", "GSM51408" ], "type": "cell type", "id": "GDS1230_3" }, { "dataset_id": "GDS1230", "description": "Rho hi", "sample_id": [ "GSM51391", "GSM51393", "GSM51395", "GSM51397", "GSM51399", "GSM51401", "GSM51403", "GSM51405", "GSM51407" ], "type": "cell type", "id": "GDS1230_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1230", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1230.tab", "compression": "gz" } ], [ [ "GDS1231.tab" ], { "title": "Hematopoietic stem cell and progenitor cell comparison (HG-U133B)", "description": "Comparison of CD34+CD33-CD38-Rho(lo)c-kit+ cells, enriched for hematopoietic stem/progenitor cells (HSC), to CD34+CD33-CD38-Rho(hi) cells, enriched for committed hematopoietic progenitor cells (HPC). Cells obtained from umbilical cord blood and bone marrow. Provides insight into control of HSC fate.", "type": "Expression profiling by array", "pubmed_id": "16089502", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2666", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1231", "description": "umbilical cord blood", "sample_id": [ "GSM51409", "GSM51410", "GSM51411", "GSM51412", "GSM51413", "GSM51414", "GSM51415", "GSM51416", "GSM51417", "GSM51418" ], "type": "tissue", "id": "GDS1231_1" }, { "dataset_id": "GDS1231", "description": "bone marrow", "sample_id": [ "GSM51419", "GSM51420", "GSM51421", "GSM51422", "GSM51423", "GSM51424", "GSM51425", "GSM51426" ], "type": "tissue", "id": "GDS1231_2" }, { "dataset_id": "GDS1231", "description": "Rho lo", "sample_id": [ "GSM51410", "GSM51412", "GSM51414", "GSM51416", "GSM51418", "GSM51420", "GSM51422", "GSM51424", "GSM51426" ], "type": "cell type", "id": "GDS1231_3" }, { "dataset_id": "GDS1231", "description": "Rho hi", "sample_id": [ "GSM51409", "GSM51411", "GSM51413", "GSM51415", "GSM51417", "GSM51419", "GSM51421", "GSM51423", "GSM51425" ], "type": "cell type", "id": "GDS1231_4" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1231", "version": 1.0, "instances": "18", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1231.tab", "compression": "gz" } ], [ [ "GDS1232.tab" ], { "title": "Liver X receptor alpha increase effect on livers of LDLR knockouts fed a high-cholesterol high-fat diet", "description": "Analysis of the effect of increasing liver X receptor (LXR) alpha in livers of low-density lipoprotein receptor (LDLR) knockouts fed a high-cholesterol, high-fat diet. LXR alpha improves the serum lipid profile of LDLR nulls fed the unhealthy diet. Effect of T0901317, an LXR alpha agonist, examined.", "type": "Expression profiling by array", "pubmed_id": "16054077", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2644", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1232", "description": "control", "sample_id": [ "GSM50801", "GSM50802" ], "type": "agent", "id": "GDS1232_1" }, { "dataset_id": "GDS1232", "description": "T0901317", "sample_id": [ "GSM50803", "GSM50804" ], "type": "agent", "id": "GDS1232_2" }, { "dataset_id": "GDS1232", "description": "LXR alpha", "sample_id": [ "GSM50805", "GSM50806" ], "type": "agent", "id": "GDS1232_3" }, { "dataset_id": "GDS1232", "description": "LXR alpha and T0901317", "sample_id": [ "GSM50807", "GSM50808" ], "type": "agent", "id": "GDS1232_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1232", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1232.tab", "compression": "gz" } ], [ [ "GDS1233.tab" ], { "title": "Dysferlin deficiency effect on proximal and distal muscles", "description": "Comparison of the proximal quadriceps femoris muscle to the distal tibialis anterior muscle of 3 week old dysferlin deficient mutants. Dysferlin mutations can result in the neuromuscular disorders Limb-Girdle muscular dystrophy type 2B and Myoshi myopathy.", "type": "Expression profiling by array", "pubmed_id": "16288871", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2629", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1233", "description": "quadriceps femoris", "sample_id": [ "GSM50476", "GSM50477", "GSM50478", "GSM50481", "GSM50483", "GSM50484" ], "type": "tissue", "id": "GDS1233_1" }, { "dataset_id": "GDS1233", "description": "tibialis anterior", "sample_id": [ "GSM50486", "GSM50487", "GSM50490", "GSM50494", "GSM50495", "GSM50497" ], "type": "tissue", "id": "GDS1233_2" }, { "dataset_id": "GDS1233", "description": "dysferlin null", "sample_id": [ "GSM50476", "GSM50477", "GSM50478", "GSM50486", "GSM50487", "GSM50490" ], "type": "genotype/variation", "id": "GDS1233_3" }, { "dataset_id": "GDS1233", "description": "wild type", "sample_id": [ "GSM50481", "GSM50483", "GSM50484", "GSM50494", "GSM50495", "GSM50497" ], "type": "genotype/variation", "id": "GDS1233_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1233", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1233.tab", "compression": "gz" } ], [ [ "GDS1234.tab" ], { "title": "Fibroblast growth factor receptor 3 K650E mutation for type II thanatophoric dysplasia", "description": "Analysis of PC12 cells expressing fibroblast growth factor receptor 3 (FGFR3) K650E mutant responsible for thanatophoric dysplasia (TD) type II. Mutant receptor expressed as a chimera of FGFR3 and platelet derived growth factor receptor. Results provide insight into TD type II pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "15843401", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2606", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1234", "description": "wild type", "sample_id": [ "GSM49962", "GSM49963", "GSM49964", "GSM49965" ], "type": "genotype/variation", "id": "GDS1234_1" }, { "dataset_id": "GDS1234", "description": "FGFR3 K650E", "sample_id": [ "GSM49958", "GSM49959", "GSM49960", "GSM49961" ], "type": "genotype/variation", "id": "GDS1234_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1234", "version": 1.0, "instances": "8", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1234.tab", "compression": "gz" } ], [ [ "GDS1235.tab" ], { "title": "Pediatric acute lymphoblastic leukemia subtypes", "description": "Expression profiling of bone marrow from pediatric patients with acute lymphoblastic leukemia (ALL). 10 B-cell ALL, 5 T-cell ALL, and 3 B-cell ALL, with the MLL/AF4 chromosomal rearrangement, patients examined. Results provide insight into the pathogenesis of childhood ALL.", "type": "Expression profiling by array", "pubmed_id": "15996926", "platform": "GPL2011", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log ratio", "reference_series": "GSE2604", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1235", "description": "B-ALL", "sample_id": [ "GSM49966", "GSM49967", "GSM49969", "GSM49970", "GSM49971", "GSM49972", "GSM49973", "GSM49974", "GSM49976", "GSM49977", "GSM49978", "GSM49979", "GSM49980", "GSM49981", "GSM49982", "GSM49983", "GSM49984", "GSM49985", "GSM49986", "GSM49987" ], "type": "disease state", "id": "GDS1235_1" }, { "dataset_id": "GDS1235", "description": "T-ALL", "sample_id": [ "GSM49988", "GSM49989", "GSM49990", "GSM49991", "GSM49992", "GSM49993", "GSM49994", "GSM49995", "GSM49996", "GSM49997" ], "type": "disease state", "id": "GDS1235_2" }, { "dataset_id": "GDS1235", "description": "B-ALL with MLL/AF4", "sample_id": [ "GSM49999", "GSM50001", "GSM50004", "GSM50005", "GSM50006", "GSM50007" ], "type": "disease state", "id": "GDS1235_3" } ], "taxid": "9606", "genes": 3255, "aggregation_function": "mean", "name": "GDS1235", "version": 1.0, "instances": "36", "variables": 3257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1235.tab", "compression": "gz" } ], [ [ "GDS1236.tab" ], { "title": "Huntingtin exon 1 protein overexpression", "description": "Analysis of Htt14A2.5 cell line expressing a truncated form of huntingtin (Htt) exon 1 protein controlled by a promoter inducible by ponasterone (PA). Expression examined 48 hours after treatment with 5 uM PA. Htt expression in Htt14A2.5 results in protein aggregation.", "type": "Expression profiling by array", "pubmed_id": "16330479", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2602", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1236", "description": "control", "sample_id": [ "GSM49946", "GSM49948", "GSM49950", "GSM49952" ], "type": "protocol", "id": "GDS1236_1" }, { "dataset_id": "GDS1236", "description": "Htt induction", "sample_id": [ "GSM49945", "GSM49947", "GSM49949", "GSM49951" ], "type": "protocol", "id": "GDS1236_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1236", "version": 1.0, "instances": "8", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1236.tab", "compression": "gz" } ], [ [ "GDS1237.tab" ], { "title": "Promyelocytic cell response to Anaplasma phagocytophilum infection", "description": "Expression profiling of NB4 promyelocytic leukemic cells infected with Anaplasma phagocytophilum, an obligate intracellular bacterium that causes granulocytic anaplasmosis. NB4 is a model for neutrophil maturation. Results provide insight into host cellular pathways affected by A. phagocytophilum.", "type": "Expression profiling by array", "pubmed_id": "16005178", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2600", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1237", "description": "control", "sample_id": [ "GSM49939", "GSM49940", "GSM49941" ], "type": "infection", "id": "GDS1237_1" }, { "dataset_id": "GDS1237", "description": "Anaplasma phagocytophilum", "sample_id": [ "GSM49942", "GSM49943", "GSM49944" ], "type": "infection", "id": "GDS1237_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1237", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1237.tab", "compression": "gz" } ], [ [ "GDS1238.tab" ], { "title": "Spinal cord contusion", "description": "Expression profiling of contused spinal cords of Fischer animals. Spinal cords examined 35 days following contusion at the thoracic 8 segment. Results identify potential targets for therapeutic intervention following spinal cord injury.", "type": "Expression profiling by array", "pubmed_id": "15380473", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2599", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1238", "description": "uninjured", "sample_id": [ "GSM49936", "GSM49937", "GSM49938" ], "type": "shock", "id": "GDS1238_1" }, { "dataset_id": "GDS1238", "description": "contused", "sample_id": [ "GSM49933", "GSM49934", "GSM49935" ], "type": "shock", "id": "GDS1238_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1238", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1238.tab", "compression": "gz" } ], [ [ "GDS1239.tab" ], { "title": "Inflammatory lung injury and effect of simvastatin", "description": "Analysis of effect of simvastatin in LPS-induced inflammatory model of acute lung injury. Male C57BL/6J administered simvastatin 24 hours prior to and concomitant with LPS. Simvastatin is a 3-hydroxy-3-methylglutaryl (HMG)-CoA reductase inhibitor that mediates endothelial cell barrier protection.", "type": "Expression profiling by array", "pubmed_id": "15665042", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1871", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1239", "description": "simvastatin", "sample_id": [ "GSM29712", "GSM29713", "GSM29714", "GSM29715", "GSM29716", "GSM29717" ], "type": "agent", "id": "GDS1239_1" }, { "dataset_id": "GDS1239", "description": "control", "sample_id": [ "GSM29706", "GSM29707", "GSM29708", "GSM29709", "GSM29710", "GSM29711" ], "type": "agent", "id": "GDS1239_2" }, { "dataset_id": "GDS1239", "description": "LPS-induced acute lung injury", "sample_id": [ "GSM29709", "GSM29710", "GSM29711", "GSM29715", "GSM29716", "GSM29717" ], "type": "disease state", "id": "GDS1239_3" }, { "dataset_id": "GDS1239", "description": "control", "sample_id": [ "GSM29706", "GSM29707", "GSM29708", "GSM29712", "GSM29713", "GSM29714" ], "type": "disease state", "id": "GDS1239_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1239", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1239.tab", "compression": "gz" } ], [ [ "GDS1240.tab" ], { "title": "Ventilator-induced lung injury (mouse)", "description": "Investigation of deleterious effects of mechanical ventilation (MV) on lung gene expression in model of ventilator-induced lung injury. MV, a treatment of acute lung injury, can augment injury in some patients.", "type": "Expression profiling by array", "pubmed_id": "15908477", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2368", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1240", "description": "control", "sample_id": [ "GSM44768", "GSM44769" ], "type": "disease state", "id": "GDS1240_1" }, { "dataset_id": "GDS1240", "description": "ventilator-induced lung injury", "sample_id": [ "GSM44770", "GSM44771" ], "type": "disease state", "id": "GDS1240_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1240", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1240.tab", "compression": "gz" } ], [ [ "GDS1241.tab" ], { "title": "Ventilator-induced lung injury (rat)", "description": "Investigation of deleterious effects of mechanical ventilation (MV) on lung gene expression in model of ventilator-induced lung injury. MV, a treatment of acute lung injury, can augment injury in some patients.", "type": "Expression profiling by array", "pubmed_id": "15908477", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2368", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1241", "description": "control", "sample_id": [ "GSM44772", "GSM44773" ], "type": "disease state", "id": "GDS1241_1" }, { "dataset_id": "GDS1241", "description": "ventilator-induced lung injury", "sample_id": [ "GSM44774", "GSM44775" ], "type": "disease state", "id": "GDS1241_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1241", "version": 1.0, "instances": "4", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1241.tab", "compression": "gz" } ], [ [ "GDS1243.tab" ], { "title": "Neuroblastoma differentiation induced by retinoic acid: time course", "description": "Temporal analysis of neuroblastoma Neuro2a cell differentiation induced by retinoic acid. Gene expression examined at several time points up to 24 hours following treatment with 20 uM all-trans-retinoic acid. Provides insight into the role of mKIAA genes in the early stages of neurite outgrowth.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1964", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "576", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE2570", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1243", "description": "0 h", "sample_id": [ "GSM48576", "GSM49519", "GSM49520", "GSM49521", "GSM49522", "GSM49523", "GSM49524" ], "type": "time", "id": "GDS1243_1" }, { "dataset_id": "GDS1243", "description": "1 h", "sample_id": [ "GSM49525", "GSM49526", "GSM49527", "GSM49528", "GSM49529" ], "type": "time", "id": "GDS1243_2" }, { "dataset_id": "GDS1243", "description": "3 h", "sample_id": [ "GSM49530", "GSM49531", "GSM49532", "GSM49533", "GSM49534" ], "type": "time", "id": "GDS1243_3" }, { "dataset_id": "GDS1243", "description": "6 h", "sample_id": [ "GSM49535", "GSM49536", "GSM49537", "GSM49538", "GSM49539", "GSM49540", "GSM49541" ], "type": "time", "id": "GDS1243_4" }, { "dataset_id": "GDS1243", "description": "12 h", "sample_id": [ "GSM49542", "GSM49543", "GSM49544", "GSM49545", "GSM49546", "GSM49547", "GSM49548" ], "type": "time", "id": "GDS1243_5" }, { "dataset_id": "GDS1243", "description": "24 h", "sample_id": [ "GSM49549", "GSM49550", "GSM49551", "GSM49552", "GSM49553", "GSM49554", "GSM49555" ], "type": "time", "id": "GDS1243_6" }, { "dataset_id": "GDS1243", "description": "control", "sample_id": [ "GSM48576", "GSM49519", "GSM49520", "GSM49521", "GSM49522", "GSM49523", "GSM49524" ], "type": "agent", "id": "GDS1243_7" }, { "dataset_id": "GDS1243", "description": "all-trans-retinoic acid", "sample_id": [ "GSM49525", "GSM49526", "GSM49527", "GSM49528", "GSM49529", "GSM49530", "GSM49531", "GSM49532", "GSM49533", "GSM49534", "GSM49535", "GSM49536", "GSM49537", "GSM49538", "GSM49539", "GSM49540", "GSM49541", "GSM49542", "GSM49543", "GSM49544", "GSM49545", "GSM49546", "GSM49547", "GSM49548", "GSM49549", "GSM49550", "GSM49551", "GSM49552", "GSM49553", "GSM49554", "GSM49555" ], "type": "agent", "id": "GDS1243_8" } ], "taxid": "10090", "genes": 501, "aggregation_function": "mean", "name": "GDS1243", "version": 1.0, "instances": "38", "variables": 504, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1243.tab", "compression": "gz" } ], [ [ "GDS1244.tab" ], { "title": "Phosgene effect on lungs: time course", "description": "Analysis of lungs exposed to the toxic industrial compound carbonyl chloride (phosgene). Phosgene exposure results in pulmonary edema and acute lung injury. Lungs examined at several time points up to 72 hours after exposure. Provides insight into molecular events affected in phosgene-injured lungs.", "type": "Expression profiling by array", "pubmed_id": "16300373", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "104", "value_type": "count", "reference_series": "GSE2565", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1244", "description": "0 h", "sample_id": [ "GSM49374", "GSM49375", "GSM49376", "GSM49377", "GSM49378", "GSM49379" ], "type": "time", "id": "GDS1244_1" }, { "dataset_id": "GDS1244", "description": "0.5 h", "sample_id": [ "GSM49328", "GSM49329", "GSM49330", "GSM49331", "GSM49332", "GSM49333", "GSM49426", "GSM49427", "GSM49428", "GSM49429", "GSM49430", "GSM49431" ], "type": "time", "id": "GDS1244_2" }, { "dataset_id": "GDS1244", "description": "1 h", "sample_id": [ "GSM49334", "GSM49335", "GSM49336", "GSM49337", "GSM49338", "GSM49339", "GSM49340", "GSM49341", "GSM49348", "GSM49349", "GSM49358", "GSM49359" ], "type": "time", "id": "GDS1244_3" }, { "dataset_id": "GDS1244", "description": "4 h", "sample_id": [ "GSM49342", "GSM49343", "GSM49344", "GSM49345", "GSM49346", "GSM49347", "GSM49390", "GSM49391", "GSM49392", "GSM49393", "GSM49394", "GSM49395" ], "type": "time", "id": "GDS1244_4" }, { "dataset_id": "GDS1244", "description": "8 h", "sample_id": [ "GSM49350", "GSM49351", "GSM49352", "GSM49353", "GSM49380", "GSM49381", "GSM49396", "GSM49397", "GSM49398", "GSM49399", "GSM49400", "GSM49401" ], "type": "time", "id": "GDS1244_5" }, { "dataset_id": "GDS1244", "description": "12 h", "sample_id": [ "GSM49354", "GSM49355", "GSM49356", "GSM49357", "GSM49360", "GSM49361", "GSM49402", "GSM49403", "GSM49404", "GSM49405", "GSM49406", "GSM49407" ], "type": "time", "id": "GDS1244_6" }, { "dataset_id": "GDS1244", "description": "24 h", "sample_id": [ "GSM49362", "GSM49363", "GSM49364", "GSM49365", "GSM49366", "GSM49367", "GSM49408", "GSM49409", "GSM49410", "GSM49411", "GSM49412", "GSM49413" ], "type": "time", "id": "GDS1244_7" }, { "dataset_id": "GDS1244", "description": "48 h", "sample_id": [ "GSM49368", "GSM49369", "GSM49370", "GSM49371", "GSM49382", "GSM49383", "GSM49384", "GSM49385", "GSM49414", "GSM49415", "GSM49416", "GSM49417", "GSM49418", "GSM49419" ], "type": "time", "id": "GDS1244_8" }, { "dataset_id": "GDS1244", "description": "72 h", "sample_id": [ "GSM49372", "GSM49373", "GSM49386", "GSM49387", "GSM49388", "GSM49389", "GSM49420", "GSM49421", "GSM49422", "GSM49423", "GSM49424", "GSM49425" ], "type": "time", "id": "GDS1244_9" }, { "dataset_id": "GDS1244", "description": "none", "sample_id": [ "GSM49374", "GSM49375", "GSM49376", "GSM49377", "GSM49378", "GSM49379" ], "type": "agent", "id": "GDS1244_10" }, { "dataset_id": "GDS1244", "description": "air", "sample_id": [ "GSM49328", "GSM49329", "GSM49330", "GSM49331", "GSM49332", "GSM49333", "GSM49336", "GSM49337", "GSM49338", "GSM49339", "GSM49340", "GSM49341", "GSM49342", "GSM49343", "GSM49344", "GSM49345", "GSM49346", "GSM49347", "GSM49350", "GSM49351", "GSM49352", "GSM49353", "GSM49354", "GSM49355", "GSM49356", "GSM49357", "GSM49360", "GSM49361", "GSM49362", "GSM49363", "GSM49364", "GSM49365", "GSM49366", "GSM49367", "GSM49368", "GSM49369", "GSM49370", "GSM49371", "GSM49372", "GSM49373", "GSM49380", "GSM49381", "GSM49382", "GSM49383", "GSM49384", "GSM49385", "GSM49386", "GSM49387", "GSM49388", "GSM49389" ], "type": "agent", "id": "GDS1244_11" }, { "dataset_id": "GDS1244", "description": "phosgene", "sample_id": [ "GSM49334", "GSM49335", "GSM49348", "GSM49349", "GSM49358", "GSM49359", "GSM49390", "GSM49391", "GSM49392", "GSM49393", "GSM49394", "GSM49395", "GSM49396", "GSM49397", "GSM49398", "GSM49399", "GSM49400", "GSM49401", "GSM49402", "GSM49403", "GSM49404", "GSM49405", "GSM49406", "GSM49407", "GSM49408", "GSM49409", "GSM49410", "GSM49411", "GSM49412", "GSM49413", "GSM49414", "GSM49415", "GSM49416", "GSM49417", "GSM49418", "GSM49419", "GSM49420", "GSM49421", "GSM49422", "GSM49423", "GSM49424", "GSM49425", "GSM49426", "GSM49427", "GSM49428", "GSM49429", "GSM49430", "GSM49431" ], "type": "agent", "id": "GDS1244_12" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1244", "version": 1.0, "instances": "104", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1244.tab", "compression": "gz" } ], [ [ "GDS1245.tab" ], { "title": "GATA-1 knockdown effect on megakaryocytes", "description": "Analysis of megakaryocytes lacking the transcription factor GATA-1. GATA-1 is required for the development of megakaryocytes and erythroid cells. Megakaryocytes obtained from 13.5 day C57BL/6 mutant embryos. Results provide insight into the role of GATA-1 in megakaryopoiesis.", "type": "Expression profiling by array", "pubmed_id": "15860665", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2527", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1245", "description": "wild type", "sample_id": [ "GSM48233", "GSM48234", "GSM48235" ], "type": "genotype/variation", "id": "GDS1245_1" }, { "dataset_id": "GDS1245", "description": "Gata-1 knockdown", "sample_id": [ "GSM48230", "GSM48231", "GSM48232" ], "type": "genotype/variation", "id": "GDS1245_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1245", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1245.tab", "compression": "gz" } ], [ [ "GDS1247.tab" ], { "title": "Dysferlin deficiency effect on skeletal and cardiac muscles", "description": "Comparison of skeletal and cardiac muscles of dysferlin deficient SJL/J animals. Dysferlin deficiency results in skeletal muscle weakness, but does not affect the heart. Dysferlin mutations can result in the neuromuscular disorders Limb-Girdle muscular dystrophy type 2B and Myoshi myopathy.", "type": "Expression profiling by array", "pubmed_id": "16237120", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2507", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1247", "description": "wild type", "sample_id": [ "GSM46151", "GSM46152", "GSM46153", "GSM46154", "GSM46155", "GSM46166", "GSM46167", "GSM46168", "GSM46169", "GSM46170" ], "type": "genotype/variation", "id": "GDS1247_1" }, { "dataset_id": "GDS1247", "description": "dysferlin mutant", "sample_id": [ "GSM46156", "GSM46157", "GSM46158", "GSM46159", "GSM46160", "GSM46161", "GSM46162", "GSM46163", "GSM46164", "GSM46165" ], "type": "genotype/variation", "id": "GDS1247_2" }, { "dataset_id": "GDS1247", "description": "cardiac muscle", "sample_id": [ "GSM46151", "GSM46152", "GSM46153", "GSM46154", "GSM46155", "GSM46156", "GSM46157", "GSM46158", "GSM46159", "GSM46160" ], "type": "tissue", "id": "GDS1247_3" }, { "dataset_id": "GDS1247", "description": "skeletal muscle", "sample_id": [ "GSM46161", "GSM46162", "GSM46163", "GSM46164", "GSM46165", "GSM46166", "GSM46167", "GSM46168", "GSM46169", "GSM46170" ], "type": "tissue", "id": "GDS1247_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1247", "version": 1.0, "instances": "20", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1247.tab", "compression": "gz" } ], [ [ "GDS1248.tab" ], { "title": "Telomere dysfunction effect on male germ cells", "description": "Expression profiling of male germ cells lacking the telomerase RNA component, Terc, or the DNA repair/telomere binding protein, Ku86, or both. Germ cells obtained from seminiferous tubules of 3 to 5 month old males. Results identify processes affected by dysfunctional telomeres.", "type": "Expression profiling by array", "pubmed_id": "15860505", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2498", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1248", "description": "Ku86 wildtype, Terc wildtype", "sample_id": [ "GSM47433", "GSM47434" ], "type": "genotype/variation", "id": "GDS1248_1" }, { "dataset_id": "GDS1248", "description": "Ku86 knockout, Terc wildtype", "sample_id": [ "GSM47429", "GSM47430" ], "type": "genotype/variation", "id": "GDS1248_2" }, { "dataset_id": "GDS1248", "description": "Ku86 knockout, Terc knockout", "sample_id": [ "GSM47427", "GSM47428" ], "type": "genotype/variation", "id": "GDS1248_3" }, { "dataset_id": "GDS1248", "description": "Ku86 wildtype, Terc knockout", "sample_id": [ "GSM47431", "GSM47432" ], "type": "genotype/variation", "id": "GDS1248_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1248", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1248.tab", "compression": "gz" } ], [ [ "GDS1249.tab" ], { "title": "Toll-like receptor agonists synergistic effect on dendritic cells: time course", "description": "Temporal analysis of monocyte-derived dendritic cells (DCs) treated with lipopolysaccharide (LPS), an agonist for toll-like receptor (TLR) 4, the synthetic imidazoquinoline resiquimod R848, an agonist for TLR8, or both. Provides insight into the synergistic effect of TLR agonists in activating DCs.", "type": "Expression profiling by array", "pubmed_id": "15995707", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE2706", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1249", "description": "untreated", "sample_id": [ "GSM52360", "GSM52346", "GSM52353" ], "type": "agent", "id": "GDS1249_1" }, { "dataset_id": "GDS1249", "description": "LPS", "sample_id": [ "GSM52340", "GSM52343", "GSM52347", "GSM52350", "GSM52354", "GSM52357" ], "type": "agent", "id": "GDS1249_2" }, { "dataset_id": "GDS1249", "description": "R848", "sample_id": [ "GSM52341", "GSM52344", "GSM52348", "GSM52351", "GSM52355", "GSM52358" ], "type": "agent", "id": "GDS1249_3" }, { "dataset_id": "GDS1249", "description": "LPS and R848", "sample_id": [ "GSM52342", "GSM52345", "GSM52349", "GSM52352", "GSM52356", "GSM52359" ], "type": "agent", "id": "GDS1249_4" }, { "dataset_id": "GDS1249", "description": "0 h", "sample_id": [ "GSM52360", "GSM52346", "GSM52353" ], "type": "time", "id": "GDS1249_5" }, { "dataset_id": "GDS1249", "description": "2 h", "sample_id": [ "GSM52340", "GSM52341", "GSM52342", "GSM52347", "GSM52348", "GSM52349", "GSM52354", "GSM52355", "GSM52356" ], "type": "time", "id": "GDS1249_6" }, { "dataset_id": "GDS1249", "description": "8 h", "sample_id": [ "GSM52343", "GSM52344", "GSM52345", "GSM52350", "GSM52351", "GSM52352", "GSM52357", "GSM52358", "GSM52359" ], "type": "time", "id": "GDS1249_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1249", "version": 1.0, "instances": "21", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1249.tab", "compression": "gz" } ], [ [ "GDS1250.tab" ], { "title": "Atypical ductal hyperplasia and breast cancer", "description": "Comparison of atypical ductal hyperplasia (ADH) tissues from patients with and without a history of breast cancer. Incidence of invasive breast cancer is high in ADH patients. Results identify putative markers of invasive breast cancer.", "type": "Expression profiling by array", "pubmed_id": "15864312", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2429", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1250", "description": "ADH with no breast cancer", "sample_id": [ "GSM45657", "GSM45658", "GSM45659", "GSM45660" ], "type": "disease state", "id": "GDS1250_1" }, { "dataset_id": "GDS1250", "description": "ADH with breast cancer", "sample_id": [ "GSM45661", "GSM45662", "GSM45663", "GSM45664" ], "type": "disease state", "id": "GDS1250_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1250", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1250.tab", "compression": "gz" } ], [ [ "GDS1251.tab" ], { "title": "Acute hypotension effect on kidneys", "description": "Expression profiling of kidneys of 12 week old normotensive Wistar-Kyoto males subjected to acute hypotension by withdrawing 3 ml of blood. Results provide insight into vasoregulatory mechanisms and the genetics and physiology of blood pressure regulation.", "type": "Expression profiling by array", "pubmed_id": "15942020", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2401", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1251", "description": "control", "sample_id": [ "GSM45184", "GSM45186", "GSM45187", "GSM45189", "GSM45193" ], "type": "stress", "id": "GDS1251_1" }, { "dataset_id": "GDS1251", "description": "acute hypotension", "sample_id": [ "GSM45188", "GSM45190", "GSM45191", "GSM45192" ], "type": "stress", "id": "GDS1251_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1251", "version": 1.0, "instances": "9", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1251.tab", "compression": "gz" } ], [ [ "GDS1252.tab" ], { "title": "Idiopathic pulmonary fibrosis", "description": "Expression profiling of lung tissues from patients with idiopathic pulmonary fibrosis (IPF), a progressive and lethal disorder characterized by the abnormal formation of fibrous scar tissue in the lungs. Results provide insight into the pathogenesis of IPF.", "type": "Expression profiling by array", "pubmed_id": [ "17178917", "16128620" ], "platform": "GPL1739", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10458", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE2052", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1252", "description": "normal", "sample_id": [ "GSM37404", "GSM37405", "GSM37406", "GSM37407", "GSM37408", "GSM37409", "GSM37410", "GSM37411", "GSM37412", "GSM37413", "GSM37414" ], "type": "disease state", "id": "GDS1252_1" }, { "dataset_id": "GDS1252", "description": "mixed connective tissue disease", "sample_id": [ "GSM37417" ], "type": "disease state", "id": "GDS1252_2" }, { "dataset_id": "GDS1252", "description": "sceloderma", "sample_id": [ "GSM37429" ], "type": "disease state", "id": "GDS1252_3" }, { "dataset_id": "GDS1252", "description": "idiopathic pulmonary fibrosis", "sample_id": [ "GSM37415", "GSM37416", "GSM37418", "GSM37419", "GSM37420", "GSM37421", "GSM37422", "GSM37423", "GSM37424", "GSM37425", "GSM37426", "GSM37427", "GSM37428" ], "type": "disease state", "id": "GDS1252_4" } ], "taxid": "9606", "genes": 9633, "aggregation_function": "mean", "name": "GDS1252", "version": 1.0, "instances": "26", "variables": 9635, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1252.tab", "compression": "gz" } ], [ [ "GDS1253.tab" ], { "title": "Pituitary adenoma subtypes", "description": "Expression profiling of 4 pituitary adenoma subtypes. Growth hormone (GH), prolactin (PRL), and adrenocorticotrophin (ACTH) secreting pituitary adenomas, and non-functioning pituitary adenoma examined. 5 specimens pooled and examined for each subtype. Results provide insight into tumor pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "15994756", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2175", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1253", "description": "normal", "sample_id": [ "GSM38986" ], "type": "disease state", "id": "GDS1253_1" }, { "dataset_id": "GDS1253", "description": "non-functioning adenoma", "sample_id": [ "GSM38987" ], "type": "disease state", "id": "GDS1253_2" }, { "dataset_id": "GDS1253", "description": "ACTH-secreting adenoma", "sample_id": [ "GSM38988" ], "type": "disease state", "id": "GDS1253_3" }, { "dataset_id": "GDS1253", "description": "GH-secreting adenoma", "sample_id": [ "GSM38989" ], "type": "disease state", "id": "GDS1253_4" }, { "dataset_id": "GDS1253", "description": "PRL-secreting adenoma", "sample_id": [ "GSM38990" ], "type": "disease state", "id": "GDS1253_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1253", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1253.tab", "compression": "gz" } ], [ [ "GDS1254.tab" ], { "title": "SOCS3 inactivation effect on embryonic stem cells", "description": "Expression profiling of embryonic stems (ES) cells deleted for SOCS3, a regulator of cytokine signaling. SOCS3 null ES cells derived from blastocysts of SOCS3 heterozygous mutants. Results provide insight into the role of SOCS3 in ES cell biology.", "type": "Expression profiling by array", "pubmed_id": "16123385", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2202", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1254", "description": "wild type", "sample_id": [ "GSM40010", "GSM40011" ], "type": "genotype/variation", "id": "GDS1254_1" }, { "dataset_id": "GDS1254", "description": "SOCS3 null", "sample_id": [ "GSM40012", "GSM40013" ], "type": "genotype/variation", "id": "GDS1254_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1254", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1254.tab", "compression": "gz" } ], [ [ "GDS1255.tab" ], { "title": "Hexamethylene diisocyanate effect on lungs: time course", "description": "Analysis of lungs from C57BL/6J males exposed to hexamethylene diisocyanate biuret trimer (HDI-BT) for 5 hours. HDI-BT is a major component of polyurethane spray paints and HDI-BT inhalation is a cause of occupational lung disease. Lungs examined at various time points up to 90 hours after exposure.", "type": "Expression profiling by array", "pubmed_id": "15885264", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1811", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1255", "description": "0 h", "sample_id": [ "GSM31623" ], "type": "time", "id": "GDS1255_1" }, { "dataset_id": "GDS1255", "description": "6 h", "sample_id": [ "GSM31624" ], "type": "time", "id": "GDS1255_2" }, { "dataset_id": "GDS1255", "description": "18 h", "sample_id": [ "GSM31625" ], "type": "time", "id": "GDS1255_3" }, { "dataset_id": "GDS1255", "description": "90 h", "sample_id": [ "GSM31626" ], "type": "time", "id": "GDS1255_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1255", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1255.tab", "compression": "gz" } ], [ [ "GDS1256.tab" ], { "title": "IFN-gamma inflammatory effect on bronchial epithelial cells modulated by dexamethasone: time course", "description": "Analysis of bronchial epithelial cells treated with interferon (IFN) gamma, or dexamethasone (dex), or both. IFN-gamma plays a role in lung inflammatory responses and corticosteroids such as dex are used as treatments for inflammation. Cells examined 8 or 24 hours after treatment.", "type": "Expression profiling by array", "pubmed_id": "15985639", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE1815", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1256", "description": "8 h", "sample_id": [ "GSM31694", "GSM31695", "GSM31696", "GSM31697", "GSM31698", "GSM31699", "GSM31700", "GSM31701", "GSM31702", "GSM31703", "GSM31704", "GSM31705", "GSM31706", "GSM31707", "GSM31708", "GSM31709" ], "type": "time", "id": "GDS1256_1" }, { "dataset_id": "GDS1256", "description": "24 h", "sample_id": [ "GSM31674", "GSM31675", "GSM31676", "GSM31677", "GSM31678", "GSM31679", "GSM31680", "GSM31681", "GSM31682", "GSM31683", "GSM31684", "GSM31685", "GSM31686", "GSM31687", "GSM31688", "GSM31689", "GSM31690", "GSM31691", "GSM31692", "GSM31693" ], "type": "time", "id": "GDS1256_2" }, { "dataset_id": "GDS1256", "description": "control", "sample_id": [ "GSM31674", "GSM31678", "GSM31682", "GSM31686", "GSM31690", "GSM31694", "GSM31695", "GSM31696", "GSM31697" ], "type": "agent", "id": "GDS1256_3" }, { "dataset_id": "GDS1256", "description": "dexamethasone", "sample_id": [ "GSM31675", "GSM31679", "GSM31683", "GSM31687", "GSM31691", "GSM31698", "GSM31699", "GSM31700", "GSM31701" ], "type": "agent", "id": "GDS1256_4" }, { "dataset_id": "GDS1256", "description": "IFN-gamma", "sample_id": [ "GSM31676", "GSM31680", "GSM31684", "GSM31688", "GSM31692", "GSM31702", "GSM31703", "GSM31704", "GSM31705" ], "type": "agent", "id": "GDS1256_5" }, { "dataset_id": "GDS1256", "description": "IFN-gamma, dexamethasone", "sample_id": [ "GSM31677", "GSM31681", "GSM31685", "GSM31689", "GSM31693", "GSM31706", "GSM31707", "GSM31708", "GSM31709" ], "type": "agent", "id": "GDS1256_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1256", "version": 1.0, "instances": "36", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1256.tab", "compression": "gz" } ], [ [ "GDS1257.tab" ], { "title": "Sickle cell plasma effect on pulmonary artery endothelial cells (HG-U133A)", "description": "Expression profiling of pulmonary artery endothelial cells exposed to plasma from sickle cell disease (SCD) patients with sickle acute chest syndrome or from SCD patients at steady state. Results provide insight into the role of extra-erythrocytic factors in sickle cell vasoocclusion.", "type": "Expression profiling by array", "pubmed_id": "15741505", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE1849", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1257", "description": "normal", "sample_id": [ "GSM32620", "GSM32621", "GSM32622", "GSM32623", "GSM32624", "GSM32625", "GSM32626", "GSM32627", "GSM32628", "GSM32629", "GSM32630", "GSM32631", "GSM32632" ], "type": "disease state", "id": "GDS1257_1" }, { "dataset_id": "GDS1257", "description": "SCD steady state", "sample_id": [ "GSM32652", "GSM32653", "GSM32654", "GSM32655", "GSM32656", "GSM32657", "GSM32658", "GSM32659", "GSM32660" ], "type": "disease state", "id": "GDS1257_2" }, { "dataset_id": "GDS1257", "description": "SCD with acute chest syndrome", "sample_id": [ "GSM32641", "GSM32642", "GSM32643", "GSM32644", "GSM32645", "GSM32646", "GSM32647", "GSM32648", "GSM32649", "GSM32650", "GSM32651" ], "type": "disease state", "id": "GDS1257_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1257", "version": 1.0, "instances": "33", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1257.tab", "compression": "gz" } ], [ [ "GDS1258.tab" ], { "title": "Sickle cell plasma effect on pulmonary artery endothelial cells (HG-U133B)", "description": "Expression profiling of pulmonary artery endothelial cells exposed to plasma from sickle cell disease (SCD) patients with sickle acute chest syndrome or from SCD patients at steady state. Results provide insight into the role of extra-erythrocytic factors in sickle cell vasoocclusion.", "type": "Expression profiling by array", "pubmed_id": "15741505", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE1849", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1258", "description": "normal", "sample_id": [ "GSM32661", "GSM32662", "GSM32663", "GSM32664", "GSM32665", "GSM32666", "GSM32667", "GSM32668", "GSM32669", "GSM32670", "GSM32671", "GSM32672" ], "type": "disease state", "id": "GDS1258_1" }, { "dataset_id": "GDS1258", "description": "SCD steady state", "sample_id": [ "GSM32684", "GSM32685", "GSM32686", "GSM32687", "GSM32688", "GSM32689", "GSM32690", "GSM32691", "GSM32692" ], "type": "disease state", "id": "GDS1258_2" }, { "dataset_id": "GDS1258", "description": "SCD with acute chest syndrome", "sample_id": [ "GSM32673", "GSM32674", "GSM32675", "GSM32676", "GSM32677", "GSM32678", "GSM32679", "GSM32680", "GSM32681", "GSM32682", "GSM32683" ], "type": "disease state", "id": "GDS1258_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1258", "version": 1.0, "instances": "32", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1258.tab", "compression": "gz" } ], [ [ "GDS1261.tab" ], { "title": "GH/IGF-1 signaling disruption and caloric restriction additive effect", "description": "Analysis of livers from growth hormone/insulin-like growth factor-1 signaling defective Ames dwarfs (DF) subjected to caloric restriction (CR). DF and CR in combination additively extend life span. Results provide insight into the mechanisms underlying this additive effect.", "type": "Expression profiling by array", "pubmed_id": "15039484", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE1093", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1261", "description": "normal", "sample_id": [ "GSM17378", "GSM17379", "GSM17380", "GSM17381", "GSM17382", "GSM17383", "GSM17384", "GSM17385", "GSM17386", "GSM17387", "GSM17388", "GSM17389", "GSM17390", "GSM17391", "GSM17392" ], "type": "genotype/variation", "id": "GDS1261_1" }, { "dataset_id": "GDS1261", "description": "DF", "sample_id": [ "GSM17362", "GSM17363", "GSM17364", "GSM17365", "GSM17366", "GSM17367", "GSM17368", "GSM17369", "GSM17370", "GSM17371", "GSM17372", "GSM17373", "GSM17374", "GSM17375", "GSM17376", "GSM17377" ], "type": "genotype/variation", "id": "GDS1261_2" }, { "dataset_id": "GDS1261", "description": "control diet", "sample_id": [ "GSM17362", "GSM17363", "GSM17364", "GSM17365", "GSM17366", "GSM17367", "GSM17368", "GSM17369", "GSM17378", "GSM17379", "GSM17380", "GSM17381", "GSM17382", "GSM17383", "GSM17384" ], "type": "protocol", "id": "GDS1261_3" }, { "dataset_id": "GDS1261", "description": "caloric restriction", "sample_id": [ "GSM17370", "GSM17371", "GSM17372", "GSM17373", "GSM17374", "GSM17375", "GSM17376", "GSM17377", "GSM17385", "GSM17386", "GSM17387", "GSM17388", "GSM17389", "GSM17390", "GSM17391", "GSM17392" ], "type": "protocol", "id": "GDS1261_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1261", "version": 1.0, "instances": "31", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1261.tab", "compression": "gz" } ], [ [ "GDS1263.tab" ], { "title": "Dukes B colon cancer recurrence", "description": "Expression profiling of previously resected frozen primary tumors from patients with Dukes' stage B colon cancer that recurred in 5 years. Results identify potential prognostic markers for tumor relapse.", "type": "Expression profiling by array", "pubmed_id": "17390049", "platform": "GPL2006", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2630", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1263", "description": "no tumor relapse", "sample_id": [ "GSM50474", "GSM50496", "GSM50504", "GSM50505", "GSM50506", "GSM50507", "GSM50508", "GSM50509", "GSM50511", "GSM50512" ], "type": "disease state", "id": "GDS1263_1" }, { "dataset_id": "GDS1263", "description": "tumor relapse", "sample_id": [ "GSM50473", "GSM50475", "GSM50510", "GSM50513", "GSM50514", "GSM50515" ], "type": "disease state", "id": "GDS1263_2" } ], "taxid": "9606", "genes": 17457, "aggregation_function": "mean", "name": "GDS1263", "version": 1.0, "instances": "16", "variables": 17459, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1263.tab", "compression": "gz" } ], [ [ "GDS1264.tab" ], { "title": "Left ventricular hypertrophy in spontaneously hypertensive model: time course", "description": "Analysis of progressive left ventricular hypertrophy (LVH) in spontaneously hypertensive (SHR) males at 12, 16, and 20 months of age. LVH impairs diastolic relaxation, which decreases cardiac output and leads to heart failure (HF). Provides insight into pathogenesis of hypertrophy and LV remodeling.", "type": "Expression profiling by array", "pubmed_id": "15837839", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE2116", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1264", "description": "SHR", "sample_id": [ "GSM38239", "GSM38240", "GSM38241", "GSM38242", "GSM38243", "GSM38244", "GSM38245", "GSM38246", "GSM38247", "GSM38248", "GSM38249", "GSM38250" ], "type": "strain", "id": "GDS1264_1" }, { "dataset_id": "GDS1264", "description": "Wistar-Kyoto control", "sample_id": [ "GSM38251", "GSM38252", "GSM38253", "GSM38254", "GSM38255", "GSM38256", "GSM38257", "GSM38258", "GSM38259", "GSM38260", "GSM38261" ], "type": "strain", "id": "GDS1264_2" }, { "dataset_id": "GDS1264", "description": "12 m", "sample_id": [ "GSM38239", "GSM38240", "GSM38241", "GSM38242", "GSM38251", "GSM38252", "GSM38253", "GSM38254" ], "type": "age", "id": "GDS1264_3" }, { "dataset_id": "GDS1264", "description": "16 m", "sample_id": [ "GSM38243", "GSM38244", "GSM38245", "GSM38246", "GSM38255", "GSM38256", "GSM38257", "GSM38258" ], "type": "age", "id": "GDS1264_4" }, { "dataset_id": "GDS1264", "description": "20 m", "sample_id": [ "GSM38247", "GSM38248", "GSM38249", "GSM38250", "GSM38259", "GSM38260", "GSM38261" ], "type": "age", "id": "GDS1264_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1264", "version": 1.0, "instances": "23", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1264.tab", "compression": "gz" } ], [ [ "GDS1265.tab" ], { "title": "Oocyte development (MOE430A)", "description": "Analysis of oocytes from follicles at the primordial to large antral stages of development, collected from B6SJLF1 animals at 2 to 22 days of age. Provides insight into the development of eggs of high meiotic and developmental competence.", "type": "Expression profiling by array", "pubmed_id": "16168984", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3351", "order": "ordered", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1265", "description": "primordial follicle", "sample_id": [ "GSM75708", "GSM75710", "GSM75712", "GSM75714" ], "type": "development stage", "id": "GDS1265_1" }, { "dataset_id": "GDS1265", "description": "primary follicle", "sample_id": [ "GSM74060", "GSM74061", "GSM74062", "GSM74063" ], "type": "development stage", "id": "GDS1265_2" }, { "dataset_id": "GDS1265", "description": "secondary follicle", "sample_id": [ "GSM75715", "GSM75717", "GSM75719", "GSM75720" ], "type": "development stage", "id": "GDS1265_3" }, { "dataset_id": "GDS1265", "description": "small antral follicle", "sample_id": [ "GSM75722", "GSM75724", "GSM75725", "GSM75727" ], "type": "development stage", "id": "GDS1265_4" }, { "dataset_id": "GDS1265", "description": "large antral follicle", "sample_id": [ "GSM75729", "GSM75730", "GSM75732", "GSM75733" ], "type": "development stage", "id": "GDS1265_5" }, { "dataset_id": "GDS1265", "description": "2 d", "sample_id": [ "GSM75708", "GSM75710", "GSM75712", "GSM75714" ], "type": "age", "id": "GDS1265_6" }, { "dataset_id": "GDS1265", "description": "6 d", "sample_id": [ "GSM74060", "GSM74061", "GSM74062", "GSM74063" ], "type": "age", "id": "GDS1265_7" }, { "dataset_id": "GDS1265", "description": "12 d", "sample_id": [ "GSM75715", "GSM75717", "GSM75719", "GSM75720" ], "type": "age", "id": "GDS1265_8" }, { "dataset_id": "GDS1265", "description": "17 d", "sample_id": [ "GSM75722", "GSM75724", "GSM75725", "GSM75727" ], "type": "age", "id": "GDS1265_9" }, { "dataset_id": "GDS1265", "description": "22 d", "sample_id": [ "GSM75729", "GSM75730", "GSM75732", "GSM75733" ], "type": "age", "id": "GDS1265_10" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1265", "version": 1.0, "instances": "20", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1265.tab", "compression": "gz" } ], [ [ "GDS1266.tab" ], { "title": "Oocyte development (MOE430B)", "description": "Analysis of oocytes from follicles at the primordial to large antral stages of development, collected from B6SJLF1 animals at 2 to 22 days of age. Provides insight into the development of eggs of high meiotic and developmental competence.", "type": "Expression profiling by array", "pubmed_id": "16168984", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3351", "order": "ordered", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1266", "description": "primordial follicle", "sample_id": [ "GSM75735", "GSM75737", "GSM75738", "GSM75740" ], "type": "development stage", "id": "GDS1266_1" }, { "dataset_id": "GDS1266", "description": "primary follicle", "sample_id": [ "GSM74067", "GSM74068", "GSM74069", "GSM74070" ], "type": "development stage", "id": "GDS1266_2" }, { "dataset_id": "GDS1266", "description": "secondary follicle", "sample_id": [ "GSM75741", "GSM75743", "GSM75745", "GSM75746" ], "type": "development stage", "id": "GDS1266_3" }, { "dataset_id": "GDS1266", "description": "small antral follicle", "sample_id": [ "GSM75748", "GSM75749", "GSM75751", "GSM75753" ], "type": "development stage", "id": "GDS1266_4" }, { "dataset_id": "GDS1266", "description": "large antral follicle", "sample_id": [ "GSM75754", "GSM75756", "GSM75758", "GSM75759" ], "type": "development stage", "id": "GDS1266_5" }, { "dataset_id": "GDS1266", "description": "2 d", "sample_id": [ "GSM75735", "GSM75737", "GSM75738", "GSM75740" ], "type": "age", "id": "GDS1266_6" }, { "dataset_id": "GDS1266", "description": "6 d", "sample_id": [ "GSM74067", "GSM74068", "GSM74069", "GSM74070" ], "type": "age", "id": "GDS1266_7" }, { "dataset_id": "GDS1266", "description": "12 d", "sample_id": [ "GSM75741", "GSM75743", "GSM75745", "GSM75746" ], "type": "age", "id": "GDS1266_8" }, { "dataset_id": "GDS1266", "description": "17 d", "sample_id": [ "GSM75748", "GSM75749", "GSM75751", "GSM75753" ], "type": "age", "id": "GDS1266_9" }, { "dataset_id": "GDS1266", "description": "22 d", "sample_id": [ "GSM75754", "GSM75756", "GSM75758", "GSM75759" ], "type": "age", "id": "GDS1266_10" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1266", "version": 1.0, "instances": "20", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1266.tab", "compression": "gz" } ], [ [ "GDS1269.tab" ], { "title": "Cigarette smoking effect on alveolar macrophage", "description": "Analysis of alveolar macrophages from 15 cigarette smokers, 15 non-smokers and 15 asthmatics. Results suggest that alveolar macrophage activation induced by smoking contributes to emphysema.", "type": "Expression profiling by array", "pubmed_id": "16166618", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE2125", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS1269", "description": "non-smoker control", "sample_id": [ "GSM38345", "GSM38346", "GSM38348", "GSM38350", "GSM38351", "GSM38353", "GSM38355", "GSM38356", "GSM38358", "GSM38362", "GSM38368", "GSM38371", "GSM38373", "GSM38377", "GSM38385" ], "type": "agent", "id": "GDS1269_1" }, { "dataset_id": "GDS1269", "description": "asthmatic disease control", "sample_id": [ "GSM38361", "GSM38363", "GSM38364", "GSM38365", "GSM38370", "GSM38372", "GSM38375", "GSM38378", "GSM38379", "GSM38381", "GSM38383", "GSM38386", "GSM38387", "GSM38388", "GSM38389" ], "type": "agent", "id": "GDS1269_2" }, { "dataset_id": "GDS1269", "description": "smoker", "sample_id": [ "GSM38347", "GSM38349", "GSM38352", "GSM38354", "GSM38357", "GSM38359", "GSM38360", "GSM38366", "GSM38367", "GSM38369", "GSM38374", "GSM38376", "GSM38380", "GSM38382", "GSM38384" ], "type": "agent", "id": "GDS1269_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1269", "version": 1.0, "instances": "45", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1269.tab", "compression": "gz" } ], [ [ "GDS1270.tab" ], { "title": "SPT10 global transcription regulator null mutant", "description": "Expression profiling of mutants lacking Spt10p. Spt10p binds the upstream activating sequences in all major core histone promoters. Results provide insight into the mechanism by which Spt10p acts as a global regulator of transcription.", "type": "Expression profiling by array", "pubmed_id": [ "16199888", "16415340" ], "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2407", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1270", "description": "wild type", "sample_id": [ "GSM45194", "GSM45279", "GSM45281" ], "type": "genotype/variation", "id": "GDS1270_1" }, { "dataset_id": "GDS1270", "description": "spt10 null", "sample_id": [ "GSM45282", "GSM45283", "GSM45284" ], "type": "genotype/variation", "id": "GDS1270_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1270", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1270.tab", "compression": "gz" } ], [ [ "GDS1271.tab" ], { "title": "Macrophage response to viral infection", "description": "Analysis of macrophages from C57BL/6J males infected with Sendai virus (SeV). Macrophages avoid virus-induced death and remove virus-infected, apoptotic cells. Provides insight into the mechanism controlling the viability of macrophages in viral infections.", "type": "Expression profiling by array", "pubmed_id": "16208318", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE2935", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1271", "description": "inactive virus", "sample_id": [ "GSM64057", "GSM64058" ], "type": "infection", "id": "GDS1271_1" }, { "dataset_id": "GDS1271", "description": "active virus", "sample_id": [ "GSM64059", "GSM64060" ], "type": "infection", "id": "GDS1271_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1271", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1271.tab", "compression": "gz" } ], [ [ "GDS1272.tab" ], { "title": "Luteinizing hormone overexpression effect on mammary gland", "description": "Analysis of thoracic mammary gland from luteinizing hormone (LH) overexpressing transgenic virgins at 16 weeks of age. LH overexpression results in the development of spontaneous mammary tumors in the absence of p53 mutations.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3348", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1272", "description": "wild type", "sample_id": [ "GSM75538", "GSM75539", "GSM75540" ], "type": "genotype/variation", "id": "GDS1272_1" }, { "dataset_id": "GDS1272", "description": "LH-overexpressing", "sample_id": [ "GSM75541", "GSM75542", "GSM75543" ], "type": "genotype/variation", "id": "GDS1272_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1272", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1272.tab", "compression": "gz" } ], [ [ "GDS1273.tab" ], { "title": "Amoxicillin effect on small intestine and colon development: time course", "description": "Analysis of small intestine and colon of Sprague-Dawleys treated with 100 mg/kg/day of amoxicillin from 7 days of age until day 17 or day 21. Results provide insight into the effect of antibiotics on gut barrier function maturation.", "type": "Expression profiling by array", "pubmed_id": "16131529", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE2354", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1273", "description": "control", "sample_id": [ "GSM42548", "GSM42549", "GSM42550", "GSM42551", "GSM42552", "GSM42553", "GSM42554", "GSM42555", "GSM42556", "GSM42557", "GSM42558", "GSM42559", "GSM42560", "GSM42561", "GSM42562", "GSM42563", "GSM42564" ], "type": "agent", "id": "GDS1273_1" }, { "dataset_id": "GDS1273", "description": "amoxicillin", "sample_id": [ "GSM42527", "GSM42528", "GSM42529", "GSM42530", "GSM42532", "GSM42533", "GSM42534", "GSM42535", "GSM42536", "GSM42537", "GSM42539", "GSM42540", "GSM42541", "GSM42542", "GSM42543", "GSM42544", "GSM42546", "GSM42547" ], "type": "agent", "id": "GDS1273_2" }, { "dataset_id": "GDS1273", "description": "17 d", "sample_id": [ "GSM42527", "GSM42529", "GSM42532", "GSM42534", "GSM42536", "GSM42539", "GSM42541", "GSM42543", "GSM42546", "GSM42548", "GSM42550", "GSM42553", "GSM42555", "GSM42557", "GSM42559", "GSM42561", "GSM42563" ], "type": "time", "id": "GDS1273_3" }, { "dataset_id": "GDS1273", "description": "21 d", "sample_id": [ "GSM42528", "GSM42530", "GSM42533", "GSM42535", "GSM42537", "GSM42540", "GSM42542", "GSM42544", "GSM42547", "GSM42549", "GSM42551", "GSM42552", "GSM42554", "GSM42556", "GSM42558", "GSM42560", "GSM42562", "GSM42564" ], "type": "time", "id": "GDS1273_4" }, { "dataset_id": "GDS1273", "description": "proximal small intestine", "sample_id": [ "GSM42541", "GSM42542", "GSM42543", "GSM42544", "GSM42546", "GSM42547", "GSM42559", "GSM42560", "GSM42561", "GSM42562", "GSM42563", "GSM42564" ], "type": "tissue", "id": "GDS1273_5" }, { "dataset_id": "GDS1273", "description": "distal small intestine", "sample_id": [ "GSM42534", "GSM42535", "GSM42536", "GSM42537", "GSM42539", "GSM42540", "GSM42553", "GSM42554", "GSM42555", "GSM42556", "GSM42557", "GSM42558" ], "type": "tissue", "id": "GDS1273_6" }, { "dataset_id": "GDS1273", "description": "colon", "sample_id": [ "GSM42527", "GSM42528", "GSM42529", "GSM42530", "GSM42532", "GSM42533", "GSM42548", "GSM42549", "GSM42550", "GSM42551", "GSM42552" ], "type": "tissue", "id": "GDS1273_7" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1273", "version": 1.0, "instances": "35", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1273.tab", "compression": "gz" } ], [ [ "GDS1274.tab" ], { "title": "Vitamin A deficiency effect on liver", "description": "Analysis of liver of 74 day old Sprague-Dawley males fed a vitamin A (retinol) deficient diet for 53 days. The liver is the major storage organ for vitamin A, is involved in vitamin A homeostasis, and expresses retinoic acid-regulated transcription factors.", "type": "Expression profiling by array", "pubmed_id": "16214324", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1600", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1274", "description": "control diet", "sample_id": [ "GSM27430", "GSM27431", "GSM27432", "GSM27433", "GSM27434", "GSM27435", "GSM27436" ], "type": "protocol", "id": "GDS1274_1" }, { "dataset_id": "GDS1274", "description": "vitamin A deficient diet", "sample_id": [ "GSM27437", "GSM27438", "GSM27439", "GSM27440", "GSM27441", "GSM27442", "GSM27443" ], "type": "protocol", "id": "GDS1274_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1274", "version": 1.0, "instances": "14", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1274.tab", "compression": "gz" } ], [ [ "GDS1275.tab" ], { "title": "17beta-estradiol and genistein effect on thymus: time course", "description": "Analysis of thymus of ovariectomized C57BL/6 treated with 17beta-estradiol (estrogen; E2) or genistein, an E2 analog. Thymus tissue examined at various intervals up to 6 days after treatment. Provides insight into E2-mediated regulation of thymic development and immune function.", "type": "Expression profiling by array", "pubmed_id": [ "15947025", "16484547" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2889", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1275", "description": "control", "sample_id": [ "GSM63205", "GSM63206" ], "type": "agent", "id": "GDS1275_1" }, { "dataset_id": "GDS1275", "description": "genistein", "sample_id": [ "GSM63207", "GSM63208", "GSM63210", "GSM63211", "GSM63212", "GSM63213" ], "type": "agent", "id": "GDS1275_2" }, { "dataset_id": "GDS1275", "description": "estrogen", "sample_id": [ "GSM63214", "GSM63215", "GSM63216", "GSM63217", "GSM63218", "GSM63220" ], "type": "agent", "id": "GDS1275_3" }, { "dataset_id": "GDS1275", "description": "0 d", "sample_id": [ "GSM63205", "GSM63206" ], "type": "time", "id": "GDS1275_4" }, { "dataset_id": "GDS1275", "description": "2 d", "sample_id": [ "GSM63207", "GSM63208", "GSM63214", "GSM63215" ], "type": "time", "id": "GDS1275_5" }, { "dataset_id": "GDS1275", "description": "3 d", "sample_id": [ "GSM63210", "GSM63211", "GSM63216", "GSM63217" ], "type": "time", "id": "GDS1275_6" }, { "dataset_id": "GDS1275", "description": "6 d", "sample_id": [ "GSM63212", "GSM63213", "GSM63218", "GSM63220" ], "type": "time", "id": "GDS1275_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1275", "version": 1.0, "instances": "14", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1275.tab", "compression": "gz" } ], [ [ "GDS1276.tab" ], { "title": "Inflammatory lung injury and mechanical ventilation", "description": "Analysis of lungs of C57BL/6 based model of lung inflammation and injury. The model develops acute lung injury (ALI) after concurrent exposure to low-dose lipopolysaccharide (LPS) and mechanical ventilation (MV). MV may contribute to ALI in critically ill patients.", "type": "Expression profiling by array", "pubmed_id": "16116230", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE2411", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1276", "description": "control", "sample_id": [ "GSM45427", "GSM45428", "GSM45429", "GSM45430", "GSM45431", "GSM45432" ], "type": "agent", "id": "GDS1276_1" }, { "dataset_id": "GDS1276", "description": "MV", "sample_id": [ "GSM45433", "GSM45434", "GSM45435", "GSM45436", "GSM45437", "GSM45438" ], "type": "agent", "id": "GDS1276_2" }, { "dataset_id": "GDS1276", "description": "LPS", "sample_id": [ "GSM45439", "GSM45440", "GSM45441", "GSM45442", "GSM45443", "GSM45444" ], "type": "agent", "id": "GDS1276_3" }, { "dataset_id": "GDS1276", "description": "MV and LPS", "sample_id": [ "GSM45445", "GSM45446", "GSM45447", "GSM45448", "GSM45449", "GSM45450" ], "type": "agent", "id": "GDS1276_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1276", "version": 1.0, "instances": "24", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1276.tab", "compression": "gz" } ], [ [ "GDS1277.tab" ], { "title": "Obliterative bronchiolitis and tracheal allograft", "description": "Analysis of tracheal grafts from BALB/c donors transplanted into MHC incompatible C57BL/6 recipients. Allografts examined up to 25 days after transplantation. Provides insight into pathogensis of allograft rejection and associated obliterative bronchiolitis development.", "type": "Expression profiling by array", "pubmed_id": "16095496", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE3418", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1277", "description": "untransplanted", "sample_id": [ "GSM77008", "GSM77009", "GSM77010", "GSM77011", "GSM77012" ], "type": "protocol", "id": "GDS1277_1" }, { "dataset_id": "GDS1277", "description": "isograft", "sample_id": [ "GSM77013", "GSM77014", "GSM77015", "GSM77016", "GSM77017", "GSM77018", "GSM77019", "GSM77020", "GSM77021", "GSM77022", "GSM77023", "GSM77024", "GSM77025", "GSM77026", "GSM77027" ], "type": "protocol", "id": "GDS1277_2" }, { "dataset_id": "GDS1277", "description": "allograft", "sample_id": [ "GSM77028", "GSM77029", "GSM77030", "GSM77031", "GSM77032", "GSM77033", "GSM77034", "GSM77035", "GSM77036", "GSM77037", "GSM77038", "GSM77039", "GSM77040", "GSM77041", "GSM77042" ], "type": "protocol", "id": "GDS1277_3" }, { "dataset_id": "GDS1277", "description": "0 d", "sample_id": [ "GSM77008", "GSM77009", "GSM77010", "GSM77011", "GSM77012" ], "type": "time", "id": "GDS1277_4" }, { "dataset_id": "GDS1277", "description": "4 d", "sample_id": [ "GSM77013", "GSM77014", "GSM77015", "GSM77016", "GSM77017", "GSM77028", "GSM77029", "GSM77030", "GSM77031", "GSM77032" ], "type": "time", "id": "GDS1277_5" }, { "dataset_id": "GDS1277", "description": "14 d", "sample_id": [ "GSM77018", "GSM77019", "GSM77020", "GSM77021", "GSM77022", "GSM77033", "GSM77034", "GSM77035", "GSM77036", "GSM77037" ], "type": "time", "id": "GDS1277_6" }, { "dataset_id": "GDS1277", "description": "25 d", "sample_id": [ "GSM77023", "GSM77024", "GSM77025", "GSM77026", "GSM77027", "GSM77038", "GSM77039", "GSM77040", "GSM77041", "GSM77042" ], "type": "time", "id": "GDS1277_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1277", "version": 1.0, "instances": "35", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1277.tab", "compression": "gz" } ], [ [ "GDS1278.tab" ], { "title": "Age effect on laryngeal muscle", "description": "Expression profiling of laryngeal posterior cricoarytenoid muscle from animals 6, 18, and 30 months of age. Results provide insight into the effect of age and sarcopenia on non-locomotive muscles.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3310", "order": "ordered", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1278", "description": "6 m", "sample_id": [ "GSM74456", "GSM74457", "GSM74458" ], "type": "age", "id": "GDS1278_1" }, { "dataset_id": "GDS1278", "description": "18 m", "sample_id": [ "GSM74459", "GSM74460", "GSM74461" ], "type": "age", "id": "GDS1278_2" }, { "dataset_id": "GDS1278", "description": "30 m", "sample_id": [ "GSM74462", "GSM74463", "GSM74464" ], "type": "age", "id": "GDS1278_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1278", "version": 1.0, "instances": "9", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1278.tab", "compression": "gz" } ], [ [ "GDS1279.tab" ], { "title": "Age effect on extraocular muscles", "description": "Expression profiling of extraocular muscle (EOM) from animals 6, 18, and 30 months of age. Extensor digitorum longus (EDL) muscles also examined. Results provide insight into the effect of age on EOM.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE3309", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1279", "description": "extensor digitorum longus", "sample_id": [ "GSM74432", "GSM74433", "GSM74434", "GSM74435", "GSM74436", "GSM74437", "GSM74438", "GSM74439", "GSM74440", "GSM74441", "GSM74442", "GSM74443" ], "type": "tissue", "id": "GDS1279_1" }, { "dataset_id": "GDS1279", "description": "extraocular muscle", "sample_id": [ "GSM74444", "GSM74445", "GSM74446", "GSM74447", "GSM74448", "GSM74449", "GSM74450", "GSM74451", "GSM74452", "GSM74453", "GSM74454", "GSM74455" ], "type": "tissue", "id": "GDS1279_2" }, { "dataset_id": "GDS1279", "description": "6 m", "sample_id": [ "GSM74432", "GSM74433", "GSM74434", "GSM74435", "GSM74444", "GSM74445", "GSM74446", "GSM74447" ], "type": "age", "id": "GDS1279_3" }, { "dataset_id": "GDS1279", "description": "18 m", "sample_id": [ "GSM74436", "GSM74437", "GSM74438", "GSM74439", "GSM74448", "GSM74449", "GSM74450", "GSM74451" ], "type": "age", "id": "GDS1279_4" }, { "dataset_id": "GDS1279", "description": "30 m", "sample_id": [ "GSM74440", "GSM74441", "GSM74442", "GSM74443", "GSM74452", "GSM74453", "GSM74454", "GSM74455" ], "type": "age", "id": "GDS1279_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1279", "version": 1.0, "instances": "24", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1279.tab", "compression": "gz" } ], [ [ "GDS1280.tab" ], { "title": "Age effect on central and peripheral nervous systems", "description": "Comparison of gene expression in the oculomotor nucleus (OMN) to that in the spinal cord. Animals 6, 18, and 30 months of age examined. Provides insight into the mechanisms underlying the divergent effects of age on the central and peripheral nervous systems.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3305", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1280", "description": "spinal cord", "sample_id": [ "GSM74342", "GSM74343", "GSM74344", "GSM74345", "GSM74346", "GSM74347", "GSM74348", "GSM74349", "GSM74350" ], "type": "tissue", "id": "GDS1280_1" }, { "dataset_id": "GDS1280", "description": "oculomotor nucleus", "sample_id": [ "GSM74333", "GSM74334", "GSM74335", "GSM74336", "GSM74337", "GSM74338", "GSM74339", "GSM74340", "GSM74341" ], "type": "tissue", "id": "GDS1280_2" }, { "dataset_id": "GDS1280", "description": "6 m", "sample_id": [ "GSM74333", "GSM74334", "GSM74335", "GSM74342", "GSM74343", "GSM74344" ], "type": "age", "id": "GDS1280_3" }, { "dataset_id": "GDS1280", "description": "18 m", "sample_id": [ "GSM74336", "GSM74337", "GSM74338", "GSM74345", "GSM74346", "GSM74347" ], "type": "age", "id": "GDS1280_4" }, { "dataset_id": "GDS1280", "description": "30 m", "sample_id": [ "GSM74339", "GSM74340", "GSM74341", "GSM74348", "GSM74349", "GSM74350" ], "type": "age", "id": "GDS1280_5" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1280", "version": 1.0, "instances": "18", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1280.tab", "compression": "gz" } ], [ [ "GDS1282.tab" ], { "title": "Clear cell sarcoma of the kidney", "description": "Expression profiling of clear cell sarcoma of the kidney (CCSK). Wilms' tumors and fetal kidney control samples also examined. Objective is to reveal diagnostic markers and insight into the pathogenesis of CCSK.", "type": "Expression profiling by array", "pubmed_id": "16299227", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE2712", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1282", "description": "control", "sample_id": [ "GSM52495", "GSM52496", "GSM52497" ], "type": "disease state", "id": "GDS1282_1" }, { "dataset_id": "GDS1282", "description": "Wilms' tumor", "sample_id": [ "GSM52463", "GSM52464", "GSM52465", "GSM52466", "GSM52467", "GSM52468", "GSM52469", "GSM52470", "GSM52471", "GSM52472", "GSM52473", "GSM52474", "GSM52475", "GSM52476", "GSM52477", "GSM52478", "GSM52479", "GSM52480" ], "type": "disease state", "id": "GDS1282_2" }, { "dataset_id": "GDS1282", "description": "clear cell sarcoma of the kidney", "sample_id": [ "GSM52481", "GSM52482", "GSM52483", "GSM52484", "GSM52485", "GSM52486", "GSM52487", "GSM52488", "GSM52489", "GSM52490", "GSM52491", "GSM52492", "GSM52493", "GSM52494" ], "type": "disease state", "id": "GDS1282_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1282", "version": 1.0, "instances": "35", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1282.tab", "compression": "gz" } ], [ [ "GDS1284.tab" ], { "title": "Multiple myeloma molecular classification", "description": "Analysis of CD138+ plasma cells purified from bone marrow of multiple myeloma (MM) patients. Results used to classify MM cases into translocation/cyclin (TC) groups based on cyclin D expression and presence of translocations in the immunoglobulin heavy chain locus at 14q32.", "type": "Expression profiling by array", "pubmed_id": "16129847", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "count", "reference_series": "GSE2912", "order": "none", "update_date": "Oct 05 2006", "subsets": [ { "dataset_id": "GDS1284", "description": "TC1", "sample_id": [ "GSM63423", "GSM63425", "GSM63428", "GSM63431", "GSM63432", "GSM63437", "GSM63448", "GSM63449", "GSM63450", "GSM63453", "GSM63458" ], "type": "cell type", "id": "GDS1284_1" }, { "dataset_id": "GDS1284", "description": "TC2", "sample_id": [ "GSM63422", "GSM63430", "GSM63434", "GSM63435", "GSM63438", "GSM63439", "GSM63442", "GSM63446", "GSM63451", "GSM63461", "GSM63463" ], "type": "cell type", "id": "GDS1284_2" }, { "dataset_id": "GDS1284", "description": "TC3", "sample_id": [ "GSM63424", "GSM63429", "GSM63436", "GSM63440", "GSM63443", "GSM63444", "GSM63445", "GSM63447", "GSM63456", "GSM63459", "GSM63462", "GSM63464", "GSM63465", "GSM63469", "GSM63470" ], "type": "cell type", "id": "GDS1284_3" }, { "dataset_id": "GDS1284", "description": "TC4", "sample_id": [ "GSM63426", "GSM63433", "GSM63441", "GSM63452", "GSM63454", "GSM63455", "GSM63460", "GSM63466", "GSM63467", "GSM63468" ], "type": "cell type", "id": "GDS1284_4" }, { "dataset_id": "GDS1284", "description": "TC5", "sample_id": [ "GSM63421", "GSM63427", "GSM63457" ], "type": "cell type", "id": "GDS1284_5" }, { "dataset_id": "GDS1284", "description": "IA", "sample_id": [ "GSM63421", "GSM63427", "GSM63429", "GSM63433", "GSM63434", "GSM63435", "GSM63442", "GSM63445", "GSM63447", "GSM63448", "GSM63449", "GSM63451", "GSM63459", "GSM63464", "GSM63466", "GSM63469", "GSM63470" ], "type": "disease state", "id": "GDS1284_6" }, { "dataset_id": "GDS1284", "description": "IIA", "sample_id": [ "GSM63422", "GSM63423", "GSM63425", "GSM63426", "GSM63436", "GSM63437", "GSM63438", "GSM63439", "GSM63443", "GSM63453", "GSM63457", "GSM63461", "GSM63463", "GSM63465", "GSM63468" ], "type": "disease state", "id": "GDS1284_7" }, { "dataset_id": "GDS1284", "description": "IIB", "sample_id": [ "GSM63452" ], "type": "disease state", "id": "GDS1284_8" }, { "dataset_id": "GDS1284", "description": "IIIA", "sample_id": [ "GSM63430", "GSM63431", "GSM63441", "GSM63444", "GSM63450", "GSM63454", "GSM63455", "GSM63456", "GSM63460", "GSM63462", "GSM63467" ], "type": "disease state", "id": "GDS1284_9" }, { "dataset_id": "GDS1284", "description": "IIIB", "sample_id": [ "GSM63424", "GSM63428", "GSM63432", "GSM63440", "GSM63446", "GSM63458" ], "type": "disease state", "id": "GDS1284_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1284", "version": 1.0, "instances": "50", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1284.tab", "compression": "gz" } ], [ [ "GDS1285.tab" ], { "title": "Macrophage response to lipopolysaccharide and CstF-64 overexpression", "description": "Analysis of RAW 264.7 macrophages treated with 100 ng/ml lipopolysaccharide (LPS) for 18 hours, or overexpressing polyadenylation factor CstF-64. LPS treatment increases CstF-64 expression. Results provide insight into post-transcriptional mechanisms affected by LPS in macrophages.", "type": "Expression profiling by array", "pubmed_id": "16207706", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2002", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1285", "description": "untreated", "sample_id": [ "GSM35899", "GSM35900", "GSM35901" ], "type": "agent", "id": "GDS1285_1" }, { "dataset_id": "GDS1285", "description": "LPS", "sample_id": [ "GSM35902", "GSM35903", "GSM35904" ], "type": "agent", "id": "GDS1285_2" }, { "dataset_id": "GDS1285", "description": "CstF-64 overexpression", "sample_id": [ "GSM35905", "GSM35906", "GSM35907" ], "type": "agent", "id": "GDS1285_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1285", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1285.tab", "compression": "gz" } ], [ [ "GDS1286.tab" ], { "title": "Esophageal cell response to low pH: time course", "description": "Analysis of esophageal cell line SKGT4 following exposure to low pH 6.5. Cells examined at various time points up to 2 hours following exposure. Results provide insight into role of gastric acid in pathogenesis of gastro-esophageal reflux disease (GORD) and esophagus adenocarcinoma.", "type": "Expression profiling by array", "pubmed_id": "16113055", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2144", "order": "ordered", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1286", "description": "0 m", "sample_id": [ "GSM38763", "GSM38764" ], "type": "time", "id": "GDS1286_1" }, { "dataset_id": "GDS1286", "description": "30 m", "sample_id": [ "GSM38765", "GSM38766" ], "type": "time", "id": "GDS1286_2" }, { "dataset_id": "GDS1286", "description": "120 m", "sample_id": [ "GSM38767", "GSM38768" ], "type": "time", "id": "GDS1286_3" }, { "dataset_id": "GDS1286", "description": "180 m", "sample_id": [ "GSM38769", "GSM38770" ], "type": "time", "id": "GDS1286_4" }, { "dataset_id": "GDS1286", "description": "240 m", "sample_id": [ "GSM38771", "GSM38772" ], "type": "time", "id": "GDS1286_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1286", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1286.tab", "compression": "gz" } ], [ [ "GDS1287.tab" ], { "title": "Bone mineral density and circulating monocytes", "description": "Comparison of circulating monocytes from pre- and postmenopausal females with low or high bone mineral density (BMD). Circulating monocytes are progenitors of osteoclasts, and produce factors important to bone metabolism. Results provide insight into the role of monocytes in osteoporosis.", "type": "Expression profiling by array", "pubmed_id": "15965235", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE2208", "order": "none", "update_date": "Nov 08 2005", "subsets": [ { "dataset_id": "GDS1287", "description": "high BMD", "sample_id": [ "GSM39877", "GSM39878", "GSM39879", "GSM39880", "GSM39881", "GSM39882", "GSM39883", "GSM39884", "GSM39885", "GSM39886" ], "type": "disease state", "id": "GDS1287_1" }, { "dataset_id": "GDS1287", "description": "low BMD", "sample_id": [ "GSM40049", "GSM40052", "GSM40202", "GSM40204", "GSM40208", "GSM40223", "GSM40232", "GSM40245", "GSM40247" ], "type": "disease state", "id": "GDS1287_2" }, { "dataset_id": "GDS1287", "description": "premenopausal", "sample_id": [ "GSM39877", "GSM39878", "GSM39879", "GSM39880", "GSM39881", "GSM40049", "GSM40052", "GSM40202", "GSM40204" ], "type": "development stage", "id": "GDS1287_3" }, { "dataset_id": "GDS1287", "description": "postmenopausal", "sample_id": [ "GSM39882", "GSM39883", "GSM39884", "GSM39885", "GSM39886", "GSM40208", "GSM40223", "GSM40232", "GSM40245", "GSM40247" ], "type": "development stage", "id": "GDS1287_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1287", "version": 1.0, "instances": "19", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1287.tab", "compression": "gz" } ], [ [ "GDS1288.tab" ], { "title": "Mesenchymal precursor cells derived from embryonic stem cells", "description": "Comparison of mesenchymal stem cells (MSC) and undifferentiated embryonic stem cells (ESC). ESC plated on a monolayer of OP9 stromal cells in the presence of 20% heat inactivated fetal bovine serum in alpha MEM medium to induce differentiation into MSC.", "type": "Expression profiling by array", "pubmed_id": "15971941", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2248", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1288", "description": "bone marrow-derived MSC", "sample_id": [ "GSM38627" ], "type": "cell type", "id": "GDS1288_1" }, { "dataset_id": "GDS1288", "description": "ES cell-derived MSC", "sample_id": [ "GSM38628", "GSM38629" ], "type": "cell type", "id": "GDS1288_2" }, { "dataset_id": "GDS1288", "description": "undifferentiated ES cell", "sample_id": [ "GSM41342", "GSM41343", "GSM41344" ], "type": "cell type", "id": "GDS1288_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1288", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1288.tab", "compression": "gz" } ], [ [ "GDS1289.tab" ], { "title": "TNFalpha effect on epidermal keratinocytes in the presence of NF-kappa B inhibitor: time course", "description": "Analysis of epidermal keratinocytes treated with TNFalpha in the presence of 10 uM parthenolide, an NF-kappa B inhibitor. Cells examined at various time points up to 48 hours following TNFalpha treatment. Results identify NF-kappa B-dependent subset of TNFalpha-regulated genes.", "type": "Expression profiling by array", "pubmed_id": "15722350", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2489", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1289", "description": "control", "sample_id": [ "GSM47302", "GSM47304", "GSM47305", "GSM47306", "GSM47307", "GSM47308", "GSM47309", "GSM47310" ], "type": "agent", "id": "GDS1289_1" }, { "dataset_id": "GDS1289", "description": "TNFalpha", "sample_id": [ "GSM47311", "GSM47312", "GSM47313", "GSM47314" ], "type": "agent", "id": "GDS1289_2" }, { "dataset_id": "GDS1289", "description": "TNFalpha and parthenolide", "sample_id": [ "GSM47315", "GSM47316", "GSM47318", "GSM47320" ], "type": "agent", "id": "GDS1289_3" }, { "dataset_id": "GDS1289", "description": "1 h", "sample_id": [ "GSM47302", "GSM47304", "GSM47311", "GSM47315" ], "type": "time", "id": "GDS1289_4" }, { "dataset_id": "GDS1289", "description": "4 h", "sample_id": [ "GSM47305", "GSM47306", "GSM47312", "GSM47316" ], "type": "time", "id": "GDS1289_5" }, { "dataset_id": "GDS1289", "description": "24 h", "sample_id": [ "GSM47307", "GSM47308", "GSM47313", "GSM47318" ], "type": "time", "id": "GDS1289_6" }, { "dataset_id": "GDS1289", "description": "48 h", "sample_id": [ "GSM47309", "GSM47310", "GSM47314", "GSM47320" ], "type": "time", "id": "GDS1289_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1289", "version": 1.0, "instances": "16", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1289.tab", "compression": "gz" } ], [ [ "GDS1290.tab" ], { "title": "CD4+ lymphocyte polarization into Th1 and Th2 cells in the presence of TGFbeta: time course (HG-U95A)", "description": "Analysis of CD4+ lymphocyte induced to differentiate into Th1 and Th2 by treatment with IL-12 and IL-4 respectively in the presence of TGFbeta. Cells examined at various time points up to 48 hours after treatment. Results provide insight into the mechanisms regulating CD4+ cell polarization.", "type": "Expression profiling by array", "pubmed_id": "14607935", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "count", "reference_series": "GSE2770", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1290", "description": "untreated", "sample_id": [ "GSM60359", "GSM60365", "GSM60348", "GSM60371" ], "type": "other", "id": "GDS1290_1" }, { "dataset_id": "GDS1290", "description": "anti-CD3 anti-CD28", "sample_id": [ "GSM60364", "GSM60360", "GSM60361", "GSM60362", "GSM60363", "GSM60366", "GSM60367", "GSM60368", "GSM60369", "GSM60370", "GSM60351", "GSM60352", "GSM60353", "GSM60354", "GSM60355", "GSM60356", "GSM60357", "GSM60358", "GSM60349", "GSM60350", "GSM60375", "GSM60376", "GSM60381", "GSM60377", "GSM60378", "GSM60372", "GSM60379", "GSM60373", "GSM60380", "GSM60374" ], "type": "other", "id": "GDS1290_2" }, { "dataset_id": "GDS1290", "description": "control", "sample_id": [ "GSM60359", "GSM60364", "GSM60365", "GSM60366", "GSM60348", "GSM60351", "GSM60352", "GSM60371", "GSM60375", "GSM60376" ], "type": "agent", "id": "GDS1290_3" }, { "dataset_id": "GDS1290", "description": "IL-12", "sample_id": [ "GSM60360", "GSM60367", "GSM60353", "GSM60354", "GSM60381", "GSM60377" ], "type": "agent", "id": "GDS1290_4" }, { "dataset_id": "GDS1290", "description": "IL-12 TGFbeta", "sample_id": [ "GSM60361", "GSM60369", "GSM60355", "GSM60356", "GSM60378", "GSM60372" ], "type": "agent", "id": "GDS1290_5" }, { "dataset_id": "GDS1290", "description": "IL-4", "sample_id": [ "GSM60362", "GSM60368", "GSM60357", "GSM60358", "GSM60379", "GSM60373" ], "type": "agent", "id": "GDS1290_6" }, { "dataset_id": "GDS1290", "description": "IL-4 TGFbeta", "sample_id": [ "GSM60363", "GSM60370", "GSM60349", "GSM60350", "GSM60380", "GSM60374" ], "type": "agent", "id": "GDS1290_7" }, { "dataset_id": "GDS1290", "description": "0 h", "sample_id": [ "GSM60359", "GSM60365", "GSM60348", "GSM60371" ], "type": "time", "id": "GDS1290_8" }, { "dataset_id": "GDS1290", "description": "2 h", "sample_id": [ "GSM60351", "GSM60353", "GSM60355", "GSM60357", "GSM60349", "GSM60375", "GSM60381", "GSM60378", "GSM60379", "GSM60380" ], "type": "time", "id": "GDS1290_9" }, { "dataset_id": "GDS1290", "description": "6 h", "sample_id": [ "GSM60352", "GSM60354", "GSM60356", "GSM60358", "GSM60350", "GSM60376", "GSM60377", "GSM60372", "GSM60373", "GSM60374" ], "type": "time", "id": "GDS1290_10" }, { "dataset_id": "GDS1290", "description": "48 h", "sample_id": [ "GSM60364", "GSM60360", "GSM60361", "GSM60362", "GSM60363", "GSM60366", "GSM60367", "GSM60368", "GSM60369", "GSM60370" ], "type": "time", "id": "GDS1290_11" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1290", "version": 1.0, "instances": "34", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1290.tab", "compression": "gz" } ], [ [ "GDS1292.tab" ], { "title": "Spinal cord injury effect on supraspinal tracts: time course (RG-U34A)", "description": "Temporal analysis of Sprague-Dawley males subjected to moderate spinal cord injury (SCI) at vertebral T9. Raphe magnus and sensorimotor cortex examined at various time points up to 3 months following trauma. Analysis of areas indirectly affected by injury helps understanding the mechanisms of SCI.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "83", "value_type": "count", "reference_series": "GSE2270", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1292", "description": "control", "sample_id": [ "GSM41517", "GSM41520", "GSM41523", "GSM41526", "GSM41529", "GSM41532", "GSM41535", "GSM41538", "GSM41541", "GSM41544", "GSM41547", "GSM41550", "GSM41552", "GSM41554", "GSM41557", "GSM41560", "GSM41633", "GSM41636", "GSM41639", "GSM41642", "GSM41645", "GSM41648", "GSM41651", "GSM41652", "GSM41653", "GSM41656", "GSM41659", "GSM41662", "GSM41665", "GSM41668", "GSM41671", "GSM41674", "GSM41677", "GSM41680", "GSM41683" ], "type": "protocol", "id": "GDS1292_1" }, { "dataset_id": "GDS1292", "description": "moderate spinal cord injury", "sample_id": [ "GSM41563", "GSM41566", "GSM41569", "GSM41572", "GSM41575", "GSM41578", "GSM41581", "GSM41584", "GSM41587", "GSM41590", "GSM41593", "GSM41596", "GSM41599", "GSM41602", "GSM41605", "GSM41608", "GSM41611", "GSM41614", "GSM41617", "GSM41620", "GSM41622", "GSM41625", "GSM41628", "GSM41631", "GSM41686", "GSM41689", "GSM41692", "GSM41695", "GSM41698", "GSM41701", "GSM41704", "GSM41707", "GSM41710", "GSM41713", "GSM41716", "GSM41719", "GSM41722", "GSM41725", "GSM41728", "GSM41731", "GSM41735", "GSM41998", "GSM44452", "GSM44455", "GSM44715", "GSM44716", "GSM44718", "GSM44719" ], "type": "protocol", "id": "GDS1292_2" }, { "dataset_id": "GDS1292", "description": "raphe magnus", "sample_id": [ "GSM41517", "GSM41520", "GSM41523", "GSM41526", "GSM41529", "GSM41532", "GSM41535", "GSM41538", "GSM41541", "GSM41544", "GSM41547", "GSM41550", "GSM41552", "GSM41554", "GSM41557", "GSM41560", "GSM41563", "GSM41566", "GSM41569", "GSM41572", "GSM41575", "GSM41578", "GSM41581", "GSM41584", "GSM41587", "GSM41590", "GSM41593", "GSM41596", "GSM41599", "GSM41602", "GSM41605", "GSM41608", "GSM41611", "GSM41614", "GSM41617", "GSM41620", "GSM41622", "GSM41625", "GSM41628", "GSM41631" ], "type": "tissue", "id": "GDS1292_3" }, { "dataset_id": "GDS1292", "description": "somatomotor cortex", "sample_id": [ "GSM41633", "GSM41636", "GSM41639", "GSM41642", "GSM41645", "GSM41648", "GSM41651", "GSM41652", "GSM41653", "GSM41656", "GSM41659", "GSM41662", "GSM41665", "GSM41668", "GSM41671", "GSM41674", "GSM41677", "GSM41680", "GSM41683", "GSM41686", "GSM41689", "GSM41692", "GSM41695", "GSM41698", "GSM41701", "GSM41704", "GSM41707", "GSM41710", "GSM41713", "GSM41716", "GSM41719", "GSM41722", "GSM41725", "GSM41728", "GSM41731", "GSM41735", "GSM41998", "GSM44452", "GSM44455", "GSM44715", "GSM44716", "GSM44718", "GSM44719" ], "type": "tissue", "id": "GDS1292_4" }, { "dataset_id": "GDS1292", "description": "0 h", "sample_id": [ "GSM41552", "GSM41554", "GSM41557", "GSM41560", "GSM41674", "GSM41677", "GSM41680", "GSM41683" ], "type": "time", "id": "GDS1292_5" }, { "dataset_id": "GDS1292", "description": "0.5 h", "sample_id": [ "GSM41535", "GSM41651", "GSM41652" ], "type": "time", "id": "GDS1292_6" }, { "dataset_id": "GDS1292", "description": "4 h", "sample_id": [ "GSM41544", "GSM41614", "GSM41662", "GSM41735", "GSM44455", "GSM41541", "GSM41611", "GSM41617", "GSM41620", "GSM41659", "GSM41998", "GSM44452" ], "type": "time", "id": "GDS1292_7" }, { "dataset_id": "GDS1292", "description": "24 h", "sample_id": [ "GSM41526", "GSM41578", "GSM41639", "GSM41698", "GSM41707", "GSM41523", "GSM41575", "GSM41581", "GSM41584", "GSM41642", "GSM41701", "GSM41704" ], "type": "time", "id": "GDS1292_8" }, { "dataset_id": "GDS1292", "description": "72 h", "sample_id": [ "GSM41665" ], "type": "time", "id": "GDS1292_9" }, { "dataset_id": "GDS1292", "description": "7 d", "sample_id": [ "GSM41622", "GSM41631", "GSM41671", "GSM44718", "GSM41547", "GSM41550", "GSM41625", "GSM41628", "GSM41668", "GSM44715", "GSM44716", "GSM44719" ], "type": "time", "id": "GDS1292_10" }, { "dataset_id": "GDS1292", "description": "14 d", "sample_id": [ "GSM41517", "GSM41569", "GSM41689", "GSM41520", "GSM41563", "GSM41566", "GSM41572", "GSM41633", "GSM41636", "GSM41686", "GSM41692", "GSM41695" ], "type": "time", "id": "GDS1292_11" }, { "dataset_id": "GDS1292", "description": "28 d", "sample_id": [ "GSM41587", "GSM41596", "GSM41648", "GSM41716", "GSM41529", "GSM41532", "GSM41590", "GSM41593", "GSM41645", "GSM41710", "GSM41713", "GSM41719" ], "type": "time", "id": "GDS1292_12" }, { "dataset_id": "GDS1292", "description": "3 m", "sample_id": [ "GSM41605", "GSM41653", "GSM41725", "GSM41538", "GSM41599", "GSM41602", "GSM41608", "GSM41656", "GSM41722", "GSM41728", "GSM41731" ], "type": "time", "id": "GDS1292_13" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1292", "version": 1.0, "instances": "83", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1292.tab", "compression": "gz" } ], [ [ "GDS1293.tab" ], { "title": "Spinal cord injury effect on supraspinal tracts: time course (RG-U34B)", "description": "Temporal analysis of Sprague-Dawley males subjected to moderate spinal cord injury (SCI) at vertebral T9. Raphe magnus and sensorimotor cortex examined at various time points up to 3 months following trauma. Analysis of areas indirectly affected by injury helps understanding the mechanisms of SCI.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "81", "value_type": "count", "reference_series": "GSE2270", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1293", "description": "control", "sample_id": [ "GSM41518", "GSM41527", "GSM41536", "GSM41545", "GSM41555", "GSM41640", "GSM41649", "GSM41660", "GSM41669", "GSM41678", "GSM41521", "GSM41524", "GSM41530", "GSM41533", "GSM41539", "GSM41542", "GSM41548", "GSM41553", "GSM41558", "GSM41561", "GSM41634", "GSM41637", "GSM41643", "GSM41646", "GSM41654", "GSM41657", "GSM41663", "GSM41666", "GSM41672", "GSM41675", "GSM41681", "GSM41684", "GSM44462" ], "type": "protocol", "id": "GDS1293_1" }, { "dataset_id": "GDS1293", "description": "moderate spinal cord injury", "sample_id": [ "GSM41564", "GSM41573", "GSM41582", "GSM41591", "GSM41600", "GSM41609", "GSM41618", "GSM41629", "GSM41687", "GSM41696", "GSM41705", "GSM41714", "GSM41723", "GSM41732", "GSM42000", "GSM44454", "GSM48634", "GSM41567", "GSM41570", "GSM41576", "GSM41579", "GSM41585", "GSM41588", "GSM41594", "GSM41597", "GSM41603", "GSM41606", "GSM41612", "GSM41615", "GSM41623", "GSM41626", "GSM41690", "GSM41693", "GSM41699", "GSM41702", "GSM41708", "GSM41711", "GSM41717", "GSM41720", "GSM41726", "GSM41729", "GSM41734", "GSM41999", "GSM44441", "GSM44450", "GSM44720", "GSM48636", "GSM48638" ], "type": "protocol", "id": "GDS1293_2" }, { "dataset_id": "GDS1293", "description": "raphe magnus", "sample_id": [ "GSM41518", "GSM41527", "GSM41536", "GSM41545", "GSM41555", "GSM41564", "GSM41573", "GSM41582", "GSM41591", "GSM41600", "GSM41609", "GSM41618", "GSM41629", "GSM42000", "GSM41521", "GSM41524", "GSM41530", "GSM41533", "GSM41539", "GSM41542", "GSM41548", "GSM41553", "GSM41558", "GSM41561", "GSM41567", "GSM41570", "GSM41576", "GSM41579", "GSM41585", "GSM41588", "GSM41594", "GSM41597", "GSM41603", "GSM41606", "GSM41612", "GSM41615", "GSM41623", "GSM41626", "GSM41999", "GSM44462" ], "type": "tissue", "id": "GDS1293_3" }, { "dataset_id": "GDS1293", "description": "somatomotor cortex", "sample_id": [ "GSM41640", "GSM41649", "GSM41660", "GSM41669", "GSM41678", "GSM41687", "GSM41696", "GSM41705", "GSM41714", "GSM41723", "GSM41732", "GSM44454", "GSM48634", "GSM41634", "GSM41637", "GSM41643", "GSM41646", "GSM41654", "GSM41657", "GSM41663", "GSM41666", "GSM41672", "GSM41675", "GSM41681", "GSM41684", "GSM41690", "GSM41693", "GSM41699", "GSM41702", "GSM41708", "GSM41711", "GSM41717", "GSM41720", "GSM41726", "GSM41729", "GSM41734", "GSM44441", "GSM44450", "GSM44720", "GSM48636", "GSM48638" ], "type": "tissue", "id": "GDS1293_4" }, { "dataset_id": "GDS1293", "description": "0 h", "sample_id": [ "GSM41555", "GSM41678", "GSM41553", "GSM41558", "GSM41561", "GSM41675", "GSM41681", "GSM41684" ], "type": "time", "id": "GDS1293_5" }, { "dataset_id": "GDS1293", "description": "4 h", "sample_id": [ "GSM41545", "GSM41618", "GSM41660", "GSM44454", "GSM41542", "GSM41612", "GSM41615", "GSM41663", "GSM41734", "GSM41999", "GSM44441", "GSM44450" ], "type": "time", "id": "GDS1293_6" }, { "dataset_id": "GDS1293", "description": "24 h", "sample_id": [ "GSM41527", "GSM41582", "GSM41640", "GSM41705", "GSM41524", "GSM41576", "GSM41579", "GSM41585", "GSM41643", "GSM41699", "GSM41702", "GSM41708" ], "type": "time", "id": "GDS1293_7" }, { "dataset_id": "GDS1293", "description": "72 h", "sample_id": [ "GSM41666" ], "type": "time", "id": "GDS1293_8" }, { "dataset_id": "GDS1293", "description": "7 d", "sample_id": [ "GSM41629", "GSM41669", "GSM42000", "GSM48634", "GSM41548", "GSM41623", "GSM41626", "GSM41672", "GSM44462", "GSM44720", "GSM48636", "GSM48638" ], "type": "time", "id": "GDS1293_9" }, { "dataset_id": "GDS1293", "description": "14 d", "sample_id": [ "GSM41518", "GSM41564", "GSM41573", "GSM41687", "GSM41696", "GSM41521", "GSM41567", "GSM41570", "GSM41634", "GSM41637", "GSM41690", "GSM41693" ], "type": "time", "id": "GDS1293_10" }, { "dataset_id": "GDS1293", "description": "28 d", "sample_id": [ "GSM41591", "GSM41649", "GSM41714", "GSM41530", "GSM41533", "GSM41588", "GSM41594", "GSM41597", "GSM41646", "GSM41711", "GSM41717", "GSM41720" ], "type": "time", "id": "GDS1293_11" }, { "dataset_id": "GDS1293", "description": "3 m", "sample_id": [ "GSM41536", "GSM41600", "GSM41609", "GSM41723", "GSM41732", "GSM41539", "GSM41603", "GSM41606", "GSM41654", "GSM41657", "GSM41726", "GSM41729" ], "type": "time", "id": "GDS1293_12" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS1293", "version": 1.0, "instances": "81", "variables": 7622, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1293.tab", "compression": "gz" } ], [ [ "GDS1294.tab" ], { "title": "Spinal cord injury effect on supraspinal tracts: time course (RG-U34C)", "description": "Temporal analysis of Sprague-Dawley males subjected to moderate spinal cord injury (SCI) at vertebral T9. Raphe magnus and sensorimotor cortex examined at various time points up to 3 months following trauma. Analysis of areas indirectly affected by injury helps understanding the mechanisms of SCI.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "80", "value_type": "count", "reference_series": "GSE2270", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1294", "description": "control", "sample_id": [ "GSM41522", "GSM41525", "GSM41531", "GSM41534", "GSM41540", "GSM41543", "GSM41549", "GSM41551", "GSM41559", "GSM41562", "GSM41638", "GSM41641", "GSM41647", "GSM41650", "GSM41658", "GSM41661", "GSM41667", "GSM41670", "GSM41676", "GSM41679", "GSM41685", "GSM41519", "GSM41528", "GSM41537", "GSM41546", "GSM41556", "GSM41635", "GSM41644", "GSM41655", "GSM41664", "GSM41673", "GSM41682" ], "type": "protocol", "id": "GDS1294_1" }, { "dataset_id": "GDS1294", "description": "moderate spinal cord injury", "sample_id": [ "GSM41568", "GSM41571", "GSM41577", "GSM41580", "GSM41586", "GSM41589", "GSM41595", "GSM41598", "GSM41604", "GSM41607", "GSM41613", "GSM41616", "GSM41621", "GSM41624", "GSM41630", "GSM41632", "GSM41688", "GSM41694", "GSM41697", "GSM41703", "GSM41706", "GSM41712", "GSM41715", "GSM41721", "GSM41724", "GSM41730", "GSM41733", "GSM44449", "GSM44451", "GSM44717", "GSM48635", "GSM48639", "GSM41565", "GSM41574", "GSM41583", "GSM41592", "GSM41601", "GSM41610", "GSM41619", "GSM41627", "GSM41691", "GSM41700", "GSM41709", "GSM41718", "GSM41727", "GSM44408", "GSM44453", "GSM48637" ], "type": "protocol", "id": "GDS1294_2" }, { "dataset_id": "GDS1294", "description": "raphe magnus", "sample_id": [ "GSM41522", "GSM41525", "GSM41531", "GSM41534", "GSM41540", "GSM41543", "GSM41549", "GSM41551", "GSM41559", "GSM41562", "GSM41568", "GSM41571", "GSM41577", "GSM41580", "GSM41586", "GSM41589", "GSM41595", "GSM41598", "GSM41604", "GSM41607", "GSM41613", "GSM41616", "GSM41621", "GSM41624", "GSM41630", "GSM41632", "GSM41519", "GSM41528", "GSM41537", "GSM41546", "GSM41556", "GSM41565", "GSM41574", "GSM41583", "GSM41592", "GSM41601", "GSM41610", "GSM41619", "GSM41627" ], "type": "tissue", "id": "GDS1294_3" }, { "dataset_id": "GDS1294", "description": "somatomotor cortex", "sample_id": [ "GSM41638", "GSM41641", "GSM41647", "GSM41650", "GSM41658", "GSM41661", "GSM41667", "GSM41670", "GSM41676", "GSM41679", "GSM41685", "GSM41688", "GSM41694", "GSM41697", "GSM41703", "GSM41706", "GSM41712", "GSM41715", "GSM41721", "GSM41724", "GSM41730", "GSM41733", "GSM44449", "GSM44451", "GSM44717", "GSM48635", "GSM48639", "GSM41635", "GSM41644", "GSM41655", "GSM41664", "GSM41673", "GSM41682", "GSM41691", "GSM41700", "GSM41709", "GSM41718", "GSM41727", "GSM44408", "GSM44453", "GSM48637" ], "type": "tissue", "id": "GDS1294_4" }, { "dataset_id": "GDS1294", "description": "0 h", "sample_id": [ "GSM41559", "GSM41562", "GSM41676", "GSM41679", "GSM41685", "GSM41556", "GSM41682" ], "type": "time", "id": "GDS1294_5" }, { "dataset_id": "GDS1294", "description": "4 h", "sample_id": [ "GSM41543", "GSM41613", "GSM41616", "GSM41621", "GSM41661", "GSM44449", "GSM44451", "GSM41546", "GSM41619", "GSM41664", "GSM44408", "GSM44453" ], "type": "time", "id": "GDS1294_6" }, { "dataset_id": "GDS1294", "description": "24 h", "sample_id": [ "GSM41525", "GSM41577", "GSM41580", "GSM41586", "GSM41641", "GSM41703", "GSM41706", "GSM41528", "GSM41583", "GSM41644", "GSM41700", "GSM41709" ], "type": "time", "id": "GDS1294_7" }, { "dataset_id": "GDS1294", "description": "72 h", "sample_id": [ "GSM41667" ], "type": "time", "id": "GDS1294_8" }, { "dataset_id": "GDS1294", "description": "7 d", "sample_id": [ "GSM41549", "GSM41551", "GSM41624", "GSM41630", "GSM41632", "GSM41670", "GSM44717", "GSM48635", "GSM48639", "GSM41627", "GSM41673", "GSM48637" ], "type": "time", "id": "GDS1294_9" }, { "dataset_id": "GDS1294", "description": "14 d", "sample_id": [ "GSM41522", "GSM41568", "GSM41571", "GSM41638", "GSM41688", "GSM41694", "GSM41697", "GSM41519", "GSM41565", "GSM41574", "GSM41635", "GSM41691" ], "type": "time", "id": "GDS1294_10" }, { "dataset_id": "GDS1294", "description": "28 d", "sample_id": [ "GSM41531", "GSM41534", "GSM41589", "GSM41595", "GSM41598", "GSM41647", "GSM41650", "GSM41712", "GSM41715", "GSM41721", "GSM41592", "GSM41718" ], "type": "time", "id": "GDS1294_11" }, { "dataset_id": "GDS1294", "description": "3 m", "sample_id": [ "GSM41540", "GSM41604", "GSM41607", "GSM41658", "GSM41724", "GSM41730", "GSM41733", "GSM41537", "GSM41601", "GSM41610", "GSM41655", "GSM41727" ], "type": "time", "id": "GDS1294_12" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS1294", "version": 1.0, "instances": "80", "variables": 7586, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1294.tab", "compression": "gz" } ], [ [ "GDS1295.tab" ], { "title": "Lethal congenital contracture syndrome", "description": "Analysis of spinal cord from fetuses with lethal congenital contracture syndrome (LCCS). LCCS is autosomal recessive, causes death in 32nd gestational week, and involves degeneration of anterior horn motor neurons in spinal cord. Results provide insight into pathways active in motoneuron disease.", "type": "Expression profiling by array", "pubmed_id": "16155903", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE1481", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1295", "description": "control", "sample_id": [ "GSM25311", "GSM25312" ], "type": "disease state", "id": "GDS1295_1" }, { "dataset_id": "GDS1295", "description": "LCCS", "sample_id": [ "GSM25308", "GSM25309", "GSM25310" ], "type": "disease state", "id": "GDS1295_2" }, { "dataset_id": "GDS1295", "description": "18 w", "sample_id": [ "GSM25308" ], "type": "age", "id": "GDS1295_3" }, { "dataset_id": "GDS1295", "description": "19 w", "sample_id": [ "GSM25311" ], "type": "age", "id": "GDS1295_4" }, { "dataset_id": "GDS1295", "description": "20 w", "sample_id": [ "GSM25309" ], "type": "age", "id": "GDS1295_5" }, { "dataset_id": "GDS1295", "description": "23 w", "sample_id": [ "GSM25310", "GSM25312" ], "type": "age", "id": "GDS1295_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1295", "version": 1.0, "instances": "5", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1295.tab", "compression": "gz" } ], [ [ "GDS1298.tab" ], { "title": "Fibroblast adipogenesis induced by EBF-1 and PPARgamma2 overexpression: time course", "description": "Analysis of NIH-3T3 embryonic fibroblasts induced to differentiate into adipocytes by overexpression of early B cell factor (EBF)-1 or peroxisome proliferator-activated receptor (PPAR)gamma2 transcription factors. Cells examined at various time points up to 10 days following overexpression.", "type": "Expression profiling by array", "pubmed_id": "16106032", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "53", "value_type": "count", "reference_series": "GSE2192", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1298", "description": "control", "sample_id": [ "GSM39234", "GSM39235", "GSM39236", "GSM39237", "GSM39246", "GSM39247", "GSM39248", "GSM39249", "GSM39258", "GSM39259", "GSM39260", "GSM39261", "GSM39262", "GSM39263", "GSM39264", "GSM39279", "GSM39280", "GSM39281" ], "type": "agent", "id": "GDS1298_1" }, { "dataset_id": "GDS1298", "description": "EBF-1", "sample_id": [ "GSM39242", "GSM39243", "GSM39244", "GSM39245", "GSM39254", "GSM39255", "GSM39256", "GSM39257", "GSM39272", "GSM39273", "GSM39274", "GSM39275", "GSM39276", "GSM39277", "GSM39278", "GSM39285", "GSM39286" ], "type": "agent", "id": "GDS1298_2" }, { "dataset_id": "GDS1298", "description": "PPARgamma2", "sample_id": [ "GSM39238", "GSM39239", "GSM39240", "GSM39241", "GSM39250", "GSM39251", "GSM39252", "GSM39253", "GSM39265", "GSM39266", "GSM39267", "GSM39268", "GSM39269", "GSM39270", "GSM39271", "GSM39282", "GSM39283", "GSM39284" ], "type": "agent", "id": "GDS1298_3" }, { "dataset_id": "GDS1298", "description": "0 d", "sample_id": [ "GSM39234", "GSM39235", "GSM39236", "GSM39237", "GSM39238", "GSM39239", "GSM39240", "GSM39241", "GSM39242", "GSM39243", "GSM39244", "GSM39245" ], "type": "time", "id": "GDS1298_4" }, { "dataset_id": "GDS1298", "description": "2 d", "sample_id": [ "GSM39246", "GSM39247", "GSM39248", "GSM39249", "GSM39250", "GSM39251", "GSM39252", "GSM39253", "GSM39254", "GSM39255", "GSM39256", "GSM39257" ], "type": "time", "id": "GDS1298_5" }, { "dataset_id": "GDS1298", "description": "4 d", "sample_id": [ "GSM39258", "GSM39259", "GSM39260", "GSM39261", "GSM39262", "GSM39263", "GSM39264", "GSM39265", "GSM39266", "GSM39267", "GSM39268", "GSM39269", "GSM39270", "GSM39271", "GSM39272", "GSM39273", "GSM39274", "GSM39275", "GSM39276", "GSM39277", "GSM39278" ], "type": "time", "id": "GDS1298_6" }, { "dataset_id": "GDS1298", "description": "10 d", "sample_id": [ "GSM39279", "GSM39280", "GSM39281", "GSM39282", "GSM39283", "GSM39284", "GSM39285", "GSM39286" ], "type": "time", "id": "GDS1298_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1298", "version": 1.0, "instances": "53", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1298.tab", "compression": "gz" } ], [ [ "GDS1299.tab" ], { "title": "Genotoxic stress", "description": "Analysis of BY4730 cells treated with DNA-reactive compounds cisplatin, methyl methanesulfonate (MMS), and bleomycin to induce genotoxic stress. Effect of genotoxic compounds compared to cytotoxic compounds, NaCl and ethanol. Results identify an expression signature unique to genotoxic stress.", "type": "Expression profiling by array", "pubmed_id": "15878181", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE2224", "order": "none", "update_date": "Dec 02 2005", "subsets": [ { "dataset_id": "GDS1299", "description": "control", "sample_id": [ "GSM40714", "GSM40715", "GSM40716", "GSM40717", "GSM40718", "GSM40719", "GSM40720", "GSM40721", "GSM40722", "GSM40723", "GSM40724" ], "type": "agent", "id": "GDS1299_1" }, { "dataset_id": "GDS1299", "description": "NaCl", "sample_id": [ "GSM40725", "GSM40726", "GSM40727" ], "type": "agent", "id": "GDS1299_2" }, { "dataset_id": "GDS1299", "description": "EtOH", "sample_id": [ "GSM40731", "GSM40732" ], "type": "agent", "id": "GDS1299_3" }, { "dataset_id": "GDS1299", "description": "MMS", "sample_id": [ "GSM40728", "GSM40729", "GSM40730" ], "type": "agent", "id": "GDS1299_4" }, { "dataset_id": "GDS1299", "description": "bleomycin", "sample_id": [ "GSM40733", "GSM40734", "GSM40735" ], "type": "agent", "id": "GDS1299_5" }, { "dataset_id": "GDS1299", "description": "cisplatin", "sample_id": [ "GSM40736", "GSM40737" ], "type": "agent", "id": "GDS1299_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1299", "version": 1.0, "instances": "24", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1299.tab", "compression": "gz" } ], [ [ "GDS1300.tab" ], { "title": "Hyperlipidemic model of adaptive immunity in aorta during atherogenesis", "description": "Expression profiling of 32 week old aorta in an apolipoprotein E deficient (apoE(-/-)) strain. Results provide insight into a major site of immune cell accumulation during atherosclerosis progression.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2372", "order": "none", "update_date": "Nov 04 2005", "subsets": [ { "dataset_id": "GDS1300", "description": "wild type", "sample_id": [ "GSM44658", "GSM44659", "GSM44663" ], "type": "strain", "id": "GDS1300_1" }, { "dataset_id": "GDS1300", "description": "apoE(-/-)", "sample_id": [ "GSM44660", "GSM44661", "GSM44662" ], "type": "strain", "id": "GDS1300_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1300", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1300.tab", "compression": "gz" } ], [ [ "GDS1301.tab" ], { "title": "Cardiovascular response to chronic voluntary exercise", "description": "Expression profiling of the aorta of spontaneously hypertensive (SHR) females after 5 weeks of wheel-cage running. Results provide insight into the molecular mechanisms underlying improved cardiovascular health associated with exercise.", "type": "Expression profiling by array", "pubmed_id": "15914578", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2418", "order": "none", "update_date": "Nov 04 2005", "subsets": [ { "dataset_id": "GDS1301", "description": "non-runner", "sample_id": [ "GSM45536", "GSM45537", "GSM45538" ], "type": "protocol", "id": "GDS1301_1" }, { "dataset_id": "GDS1301", "description": "runner", "sample_id": [ "GSM45539", "GSM45540", "GSM45541" ], "type": "protocol", "id": "GDS1301_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1301", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1301.tab", "compression": "gz" } ], [ [ "GDS1302.tab" ], { "title": "2,3,7,8-tetrachlorodibenzo-p-dioxin effect on cardiovascular development", "description": "Analysis of gestational day (GD) 17.5 fetal hearts isolated from pregnant C57BL/6Ns treated at GD 14.5 with up to 6.0 ug/kg 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD). TCDD, a cardiovascular teratogen, inhibits cardiomyocyte proliferation, a process that peaks between GD 14.5 to 17.5.", "type": "Expression profiling by array", "pubmed_id": "16120747", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2812", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1302", "description": "control", "sample_id": [ "GSM60894", "GSM60895", "GSM60896", "GSM60897", "GSM60902", "GSM60903", "GSM60906", "GSM60907" ], "type": "agent", "id": "GDS1302_1" }, { "dataset_id": "GDS1302", "description": "TCDD", "sample_id": [ "GSM60898", "GSM60899", "GSM60900", "GSM60901", "GSM60904", "GSM60905", "GSM60908", "GSM60909", "GSM60910", "GSM60911", "GSM60912", "GSM60913" ], "type": "agent", "id": "GDS1302_2" }, { "dataset_id": "GDS1302", "description": "control", "sample_id": [ "GSM60894", "GSM60895", "GSM60896", "GSM60897", "GSM60902", "GSM60903", "GSM60906", "GSM60907" ], "type": "dose", "id": "GDS1302_3" }, { "dataset_id": "GDS1302", "description": "1.5 ug/kg", "sample_id": [ "GSM60898", "GSM60901", "GSM60904", "GSM60908" ], "type": "dose", "id": "GDS1302_4" }, { "dataset_id": "GDS1302", "description": "3 ug/kg", "sample_id": [ "GSM60899", "GSM60900", "GSM60905", "GSM60909" ], "type": "dose", "id": "GDS1302_5" }, { "dataset_id": "GDS1302", "description": "6 ug/kg", "sample_id": [ "GSM60910", "GSM60911", "GSM60912", "GSM60913" ], "type": "dose", "id": "GDS1302_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1302", "version": 1.0, "instances": "20", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1302.tab", "compression": "gz" } ], [ [ "GDS1303.tab" ], { "title": "Aldosterone effect on heart: time course", "description": "Analysis of heart from C57BL/6 males injected with 10 ug/kg aldosterone. Hearts examined at various time points up to 12 hours after injection. Results provide insight into the molecular mechanisms underlying the adverse effects of aldosterone on the heart.", "type": "Expression profiling by array", "pubmed_id": "16601137", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE3440", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1303", "description": "control", "sample_id": [ "GSM77688", "GSM77689", "GSM77690", "GSM77691", "GSM77692", "GSM77693", "GSM77694", "GSM77695" ], "type": "agent", "id": "GDS1303_1" }, { "dataset_id": "GDS1303", "description": "aldosterone", "sample_id": [ "GSM77696", "GSM77697", "GSM77698", "GSM77699", "GSM77700", "GSM77701", "GSM77702" ], "type": "agent", "id": "GDS1303_2" }, { "dataset_id": "GDS1303", "description": "0 h", "sample_id": [ "GSM77688" ], "type": "time", "id": "GDS1303_3" }, { "dataset_id": "GDS1303", "description": "0.5 h", "sample_id": [ "GSM77689", "GSM77696" ], "type": "time", "id": "GDS1303_4" }, { "dataset_id": "GDS1303", "description": "1 h", "sample_id": [ "GSM77690", "GSM77697" ], "type": "time", "id": "GDS1303_5" }, { "dataset_id": "GDS1303", "description": "2 h", "sample_id": [ "GSM77691", "GSM77698" ], "type": "time", "id": "GDS1303_6" }, { "dataset_id": "GDS1303", "description": "3 h", "sample_id": [ "GSM77692", "GSM77699" ], "type": "time", "id": "GDS1303_7" }, { "dataset_id": "GDS1303", "description": "4 h", "sample_id": [ "GSM77693", "GSM77700" ], "type": "time", "id": "GDS1303_8" }, { "dataset_id": "GDS1303", "description": "5 h", "sample_id": [ "GSM77694", "GSM77701" ], "type": "time", "id": "GDS1303_9" }, { "dataset_id": "GDS1303", "description": "12 h", "sample_id": [ "GSM77695", "GSM77702" ], "type": "time", "id": "GDS1303_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1303", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1303.tab", "compression": "gz" } ], [ [ "GDS1304.tab" ], { "title": "Cigarette smoking effect on small airway epithelium", "description": "Analysis of phenotypically normal 10th to 12th order small airway bronchial epithelia from cigarette smokers. Cigarette smoking is the most common cause of chronic obstructive pulmonary disease (COPD). Results provide insight into the early pathogenesis of COPD.", "type": "Expression profiling by array", "pubmed_id": "17115125", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE3320", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1304", "description": "non-smoker", "sample_id": [ "GSM74797", "GSM74798", "GSM74799", "GSM74800", "GSM74801" ], "type": "stress", "id": "GDS1304_1" }, { "dataset_id": "GDS1304", "description": "smoker", "sample_id": [ "GSM74802", "GSM74819", "GSM74820", "GSM74821", "GSM74822", "GSM74823" ], "type": "stress", "id": "GDS1304_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1304", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1304.tab", "compression": "gz" } ], [ [ "GDS1305.tab" ], { "title": "Pax6 mutation effect on brain development", "description": "Analysis of forebrain and hindbrain of Small eye homozygous Pax6 mutants at embryonic day 12.5. Pax6 is a transcription factor important in the development of the brain, where it affects cell fate, cell proliferation, and patterning. Results identify targets of Pax6 in the developing brain.", "type": "Expression profiling by array", "pubmed_id": "16237179", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2272", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1305", "description": "wild type", "sample_id": [ "GSM42014", "GSM42016", "GSM42018", "GSM42020" ], "type": "genotype/variation", "id": "GDS1305_1" }, { "dataset_id": "GDS1305", "description": "Pax6 mutant", "sample_id": [ "GSM42015", "GSM42017", "GSM42019", "GSM42021" ], "type": "genotype/variation", "id": "GDS1305_2" }, { "dataset_id": "GDS1305", "description": "forebrain", "sample_id": [ "GSM42014", "GSM42015", "GSM42016", "GSM42017" ], "type": "tissue", "id": "GDS1305_3" }, { "dataset_id": "GDS1305", "description": "hindbrain", "sample_id": [ "GSM42018", "GSM42019", "GSM42020", "GSM42021" ], "type": "tissue", "id": "GDS1305_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1305", "version": 1.0, "instances": "8", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1305.tab", "compression": "gz" } ], [ [ "GDS1306.tab" ], { "title": "MAP kinase activation effect on heart: time course", "description": "Analysis of adult hearts after induction of activated transgene mutants of Ras, MKK3, or MKK7, which are specific upstream activators of the MAP kinases ERK, p38, and JNK respectively. Hearts examined at various time points up to 4 weeks following each transgene induction using tamoxifen.", "type": "Expression profiling by array", "pubmed_id": "16368875", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE3530", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1306", "description": "control", "sample_id": [ "GSM80525", "GSM80526", "GSM80527", "GSM80528", "GSM80529", "GSM80530" ], "type": "genotype/variation", "id": "GDS1306_1" }, { "dataset_id": "GDS1306", "description": "MKK7D transgenic", "sample_id": [ "GSM80531", "GSM80532", "GSM80533", "GSM80534", "GSM80535", "GSM80536", "GSM80537", "GSM80538", "GSM80539", "GSM80540", "GSM80541", "GSM80542" ], "type": "genotype/variation", "id": "GDS1306_2" }, { "dataset_id": "GDS1306", "description": "HRas-v12 transgenic", "sample_id": [ "GSM80543", "GSM80544", "GSM80545", "GSM80546", "GSM80547", "GSM80548", "GSM80549", "GSM80550", "GSM80551", "GSM80552", "GSM80553" ], "type": "genotype/variation", "id": "GDS1306_3" }, { "dataset_id": "GDS1306", "description": "MKK3bE transgenic", "sample_id": [ "GSM80554", "GSM80555", "GSM80556", "GSM80557", "GSM80558", "GSM80559", "GSM80560" ], "type": "genotype/variation", "id": "GDS1306_4" }, { "dataset_id": "GDS1306", "description": "control", "sample_id": [ "GSM80525", "GSM80526", "GSM80527", "GSM80528", "GSM80529", "GSM80530" ], "type": "time", "id": "GDS1306_5" }, { "dataset_id": "GDS1306", "description": "4 to 7 d", "sample_id": [ "GSM80531", "GSM80532", "GSM80533", "GSM80534", "GSM80535", "GSM80536", "GSM80543", "GSM80544", "GSM80545", "GSM80546", "GSM80547", "GSM80554", "GSM80555" ], "type": "time", "id": "GDS1306_6" }, { "dataset_id": "GDS1306", "description": "2 to 4 w", "sample_id": [ "GSM80537", "GSM80538", "GSM80539", "GSM80540", "GSM80541", "GSM80542", "GSM80548", "GSM80549", "GSM80550", "GSM80551", "GSM80552", "GSM80553", "GSM80556", "GSM80557", "GSM80558", "GSM80559", "GSM80560" ], "type": "time", "id": "GDS1306_7" }, { "dataset_id": "GDS1306", "description": "male", "sample_id": [ "GSM80525", "GSM80526", "GSM80527", "GSM80545", "GSM80546", "GSM80547", "GSM80551", "GSM80552", "GSM80553", "GSM80556", "GSM80557", "GSM80558" ], "type": "gender", "id": "GDS1306_8" }, { "dataset_id": "GDS1306", "description": "female", "sample_id": [ "GSM80528", "GSM80529", "GSM80530", "GSM80531", "GSM80532", "GSM80533", "GSM80534", "GSM80535", "GSM80536", "GSM80537", "GSM80538", "GSM80539", "GSM80540", "GSM80541", "GSM80542", "GSM80543", "GSM80544", "GSM80548", "GSM80549", "GSM80550", "GSM80554", "GSM80555", "GSM80559", "GSM80560" ], "type": "gender", "id": "GDS1306_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1306", "version": 1.0, "instances": "36", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1306.tab", "compression": "gz" } ], [ [ "GDS1307.tab" ], { "title": "Various high fat diets effect on liver", "description": "Expression profiling of liver from Wistar males fed for 12 weeks with one of 4 different high fat diets, each differing in fatty acid composition. The different fat sources used were lard, olive oil, coconut fat, and cod liver oil.", "type": "Expression profiling by array", "pubmed_id": "16720718", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3512", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1307", "description": "control diet", "sample_id": [ "GSM78877", "GSM78878" ], "type": "protocol", "id": "GDS1307_1" }, { "dataset_id": "GDS1307", "description": "lard diet", "sample_id": [ "GSM78869", "GSM78870" ], "type": "protocol", "id": "GDS1307_2" }, { "dataset_id": "GDS1307", "description": "olive oil diet", "sample_id": [ "GSM78871", "GSM78872" ], "type": "protocol", "id": "GDS1307_3" }, { "dataset_id": "GDS1307", "description": "coconut fat diet", "sample_id": [ "GSM78873", "GSM78874" ], "type": "protocol", "id": "GDS1307_4" }, { "dataset_id": "GDS1307", "description": "cod liver oil diet", "sample_id": [ "GSM78875", "GSM78876" ], "type": "protocol", "id": "GDS1307_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1307", "version": 1.0, "instances": "10", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1307.tab", "compression": "gz" } ], [ [ "GDS1309.tab" ], { "title": "Myotube response to hydrogen peroxide", "description": "Expression profiling of myotubes following treatment with hydrogen peroxide at various concentrations up to 1000 uM. Myotubes derived from C2C12 myoblasts. Results provide insight into the response of muscle to reactive oxygen species.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3078", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1309", "description": "control", "sample_id": [ "GSM67664", "GSM67690", "GSM67711", "GSM67712" ], "type": "agent", "id": "GDS1309_1" }, { "dataset_id": "GDS1309", "description": "hydrogen peroxide", "sample_id": [ "GSM67666", "GSM67667", "GSM67668", "GSM67669", "GSM67713", "GSM67714", "GSM67715", "GSM67716", "GSM67717", "GSM67718", "GSM67719", "GSM67720", "GSM67721", "GSM67722", "GSM67723", "GSM67724" ], "type": "agent", "id": "GDS1309_2" }, { "dataset_id": "GDS1309", "description": "control", "sample_id": [ "GSM67664", "GSM67690", "GSM67711", "GSM67712" ], "type": "dose", "id": "GDS1309_3" }, { "dataset_id": "GDS1309", "description": "1 uM", "sample_id": [ "GSM67666", "GSM67713", "GSM67714", "GSM67715" ], "type": "dose", "id": "GDS1309_4" }, { "dataset_id": "GDS1309", "description": "10 uM", "sample_id": [ "GSM67667", "GSM67716", "GSM67717", "GSM67718" ], "type": "dose", "id": "GDS1309_5" }, { "dataset_id": "GDS1309", "description": "100 uM", "sample_id": [ "GSM67668", "GSM67719", "GSM67720", "GSM67721" ], "type": "dose", "id": "GDS1309_6" }, { "dataset_id": "GDS1309", "description": "1000 uM", "sample_id": [ "GSM67669", "GSM67722", "GSM67723", "GSM67724" ], "type": "dose", "id": "GDS1309_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1309", "version": 1.0, "instances": "20", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1309.tab", "compression": "gz" } ], [ [ "GDS1310.tab" ], { "title": "Neonatal mononuclear cell response to lipopolysaccharide", "description": "Analysis of neonatal mononuclear cells from cord blood incubated with 5 ug/ml lipopolysaccharide (LPS). Effect of LPS on adult mononuclear cells from peripheral blood compared. Results provide insight into the molecular basis for increased susceptibility of neonates to sepsis.", "type": "Expression profiling by array", "pubmed_id": "17700033", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3140", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1310", "description": "adult mononuclear cell", "sample_id": [ "GSM70121", "GSM70122", "GSM70123", "GSM70124", "GSM71079", "GSM71080" ], "type": "cell type", "id": "GDS1310_1" }, { "dataset_id": "GDS1310", "description": "neonatal mononuclear cell", "sample_id": [ "GSM71081", "GSM71082", "GSM71083", "GSM71084", "GSM71085", "GSM71086" ], "type": "cell type", "id": "GDS1310_2" }, { "dataset_id": "GDS1310", "description": "control", "sample_id": [ "GSM70121", "GSM70122", "GSM70123", "GSM71081", "GSM71082", "GSM71083" ], "type": "agent", "id": "GDS1310_3" }, { "dataset_id": "GDS1310", "description": "LPS", "sample_id": [ "GSM70124", "GSM71079", "GSM71080", "GSM71084", "GSM71085", "GSM71086" ], "type": "agent", "id": "GDS1310_4" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1310", "version": 1.0, "instances": "12", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1310.tab", "compression": "gz" } ], [ [ "GDS1311.tab" ], { "title": "Age effect on lipopolysaccharide-induced neuroinflammation and sickness behavior", "description": "Analysis of aged brain after activation of the peripheral innate immune system by intraperitoneal injection of E. coli lipopolysaccharide (LPS). Results provide insight into molecular events underlying severe behavioral deficits (delirium) common in older adults with systemic infections.", "type": "Expression profiling by array", "pubmed_id": "15919760", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3253", "order": "none", "update_date": "Nov 04 2005", "subsets": [ { "dataset_id": "GDS1311", "description": "adult", "sample_id": [ "GSM72507", "GSM73001", "GSM73014", "GSM73015", "GSM73018", "GSM73019" ], "type": "development stage", "id": "GDS1311_1" }, { "dataset_id": "GDS1311", "description": "aged", "sample_id": [ "GSM73000", "GSM73002", "GSM73016", "GSM73017", "GSM73340", "GSM73341" ], "type": "development stage", "id": "GDS1311_2" }, { "dataset_id": "GDS1311", "description": "LPS", "sample_id": [ "GSM72507", "GSM73000", "GSM73018", "GSM73019", "GSM73340", "GSM73341" ], "type": "agent", "id": "GDS1311_3" }, { "dataset_id": "GDS1311", "description": "saline", "sample_id": [ "GSM73001", "GSM73002", "GSM73014", "GSM73015", "GSM73016", "GSM73017" ], "type": "agent", "id": "GDS1311_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1311", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1311.tab", "compression": "gz" } ], [ [ "GDS1312.tab" ], { "title": "Squamous lung cancer", "description": "Expression profiling of squamous lung cancer biopsy specimens and paired normal specimens from 5 patients. Differentially expressed genes integrated with protein interaction maps. Results suggest that differentially expressed genes are highly connected through protein interactions.", "type": "Expression profiling by array", "pubmed_id": "16188928", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE3268", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1312", "description": "normal", "sample_id": [ "GSM73386", "GSM73388", "GSM73390", "GSM73392", "GSM73394" ], "type": "disease state", "id": "GDS1312_1" }, { "dataset_id": "GDS1312", "description": "cancer", "sample_id": [ "GSM73387", "GSM73389", "GSM73391", "GSM73393", "GSM73395" ], "type": "disease state", "id": "GDS1312_2" }, { "dataset_id": "GDS1312", "description": "patient 31", "sample_id": [ "GSM73386", "GSM73387" ], "type": "individual", "id": "GDS1312_3" }, { "dataset_id": "GDS1312", "description": "patient 33", "sample_id": [ "GSM73388", "GSM73389" ], "type": "individual", "id": "GDS1312_4" }, { "dataset_id": "GDS1312", "description": "patient 35", "sample_id": [ "GSM73390", "GSM73391" ], "type": "individual", "id": "GDS1312_5" }, { "dataset_id": "GDS1312", "description": "patient 36", "sample_id": [ "GSM73392", "GSM73393" ], "type": "individual", "id": "GDS1312_6" }, { "dataset_id": "GDS1312", "description": "patient 42", "sample_id": [ "GSM73394", "GSM73395" ], "type": "individual", "id": "GDS1312_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1312", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1312.tab", "compression": "gz" } ], [ [ "GDS1313.tab" ], { "title": "GFAP-negative lamina cribrosa cell response to TGF-beta1", "description": "Analysis of glial fibrillary acidic acid (GFAP)-negative lamina cribrosa (LC) glial cell response to 10 ng/ml TGF-beta1 for 24 hours. This is a model for primary open-angle glaucoma (POAG) in which TGF-beta levels are elevated in human LC tissue.", "type": "Expression profiling by array", "pubmed_id": "16078232", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE2705", "order": "none", "update_date": "Jan 04 2006", "subsets": [ { "dataset_id": "GDS1313", "description": "control", "sample_id": [ "GSM52089", "GSM52091" ], "type": "agent", "id": "GDS1313_1" }, { "dataset_id": "GDS1313", "description": "TGFb1", "sample_id": [ "GSM52088", "GSM52090" ], "type": "agent", "id": "GDS1313_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1313", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1313.tab", "compression": "gz" } ], [ [ "GDS1314.tab" ], { "title": "Malignant melanoma cell lines", "description": "Expression profiling of MelJUSO, A375, 607B, 518A2, and Skmel 28 malignant melanoma cell lines. Results correlated with regions of chromosomal breakpoints, and indicate an association between chromosomal breakpoints and altered gene expression.", "type": "Expression profiling by array", "pubmed_id": "15967107", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE1845", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1314", "description": "MelJUSO", "sample_id": [ "GSM29662" ], "type": "cell line", "id": "GDS1314_1" }, { "dataset_id": "GDS1314", "description": "607B", "sample_id": [ "GSM29664" ], "type": "cell line", "id": "GDS1314_2" }, { "dataset_id": "GDS1314", "description": "Skmel 28", "sample_id": [ "GSM29666" ], "type": "cell line", "id": "GDS1314_3" }, { "dataset_id": "GDS1314", "description": "A375", "sample_id": [ "GSM29663" ], "type": "cell line", "id": "GDS1314_4" }, { "dataset_id": "GDS1314", "description": "518A2", "sample_id": [ "GSM29665" ], "type": "cell line", "id": "GDS1314_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1314", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1314.tab", "compression": "gz" } ], [ [ "GDS1315.tab" ], { "title": "Immune response to suppressive vs. stimulatory immunomodulators", "description": "Analysis of bone marrow-derived dendritic cells (DC) treated with lipid-transfected, double-stranded DNA or CpG oligonucleotides for 4 hours. Double-stranded DNA is an immunosuppressive agent (ISD), CpG oligo an immunostimulant. Results provide insight into differential immune response.", "type": "Expression profiling by array", "pubmed_id": "16413926", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2197", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1315", "description": "untreated", "sample_id": [ "GSM40053", "GSM40056" ], "type": "agent", "id": "GDS1315_1" }, { "dataset_id": "GDS1315", "description": "lipid-transfected double-stranded DNA", "sample_id": [ "GSM40050", "GSM40055" ], "type": "agent", "id": "GDS1315_2" }, { "dataset_id": "GDS1315", "description": "CpG oligonucleotides", "sample_id": [ "GSM40051", "GSM40054" ], "type": "agent", "id": "GDS1315_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1315", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1315.tab", "compression": "gz" } ], [ [ "GDS1316.tab" ], { "title": "GATA-1 variant role in Down syndrome megakaryocytic leukemias", "description": "Analysis of megakaryocytes and their progenitors from mutant E12.5 embryo liver expressing truncated transcription factor GATA-1. Results provide insight into the role of variant GATA-1 (GATA1s) in megakaryocyte hyperproliferation and Down syndrome (DS)-associated leukemias (TMD, DS-AMKL/DS-AML M7).", "type": "Expression profiling by array", "pubmed_id": "15895080", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2433", "order": "none", "update_date": "Nov 04 2005", "subsets": [ { "dataset_id": "GDS1316", "description": "wild type", "sample_id": [ "GSM45786", "GSM45787", "GSM45790", "GSM45791" ], "type": "genotype/variation", "id": "GDS1316_1" }, { "dataset_id": "GDS1316", "description": "GATA-1deltaN mutant", "sample_id": [ "GSM45788", "GSM45789", "GSM45792", "GSM45793" ], "type": "genotype/variation", "id": "GDS1316_2" }, { "dataset_id": "GDS1316", "description": "GATA-1deltaNeodeltaHS mutant", "sample_id": [ "GSM45794", "GSM45795" ], "type": "genotype/variation", "id": "GDS1316_3" }, { "dataset_id": "GDS1316", "description": "megakaryocyte", "sample_id": [ "GSM45786", "GSM45787", "GSM45788", "GSM45789", "GSM45794", "GSM45795" ], "type": "cell type", "id": "GDS1316_4" }, { "dataset_id": "GDS1316", "description": "megakaryocyte progenitor", "sample_id": [ "GSM45790", "GSM45791", "GSM45792", "GSM45793" ], "type": "cell type", "id": "GDS1316_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1316", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1316.tab", "compression": "gz" } ], [ [ "GDS1317.tab" ], { "title": "Umbilical vein endothelial cell response to shear stress and intraluminal pressure", "description": "Analysis of endothelial cells (HUVEC) isolated from umbilical veins subjected to high shear stress or high intraluminal pressure. Umbilical veins exposed to each stimuli using a vascular ex vivo perfusion system. Results suggests that response to shear stress differs from response to pressure.", "type": "Expression profiling by array", "pubmed_id": "16155357", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1518", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1317", "description": "normal pressure", "sample_id": [ "GSM26289", "GSM26290" ], "type": "stress", "id": "GDS1317_1" }, { "dataset_id": "GDS1317", "description": "high pressure", "sample_id": [ "GSM26287", "GSM26288" ], "type": "stress", "id": "GDS1317_2" }, { "dataset_id": "GDS1317", "description": "low shear stress", "sample_id": [ "GSM26293", "GSM26294" ], "type": "stress", "id": "GDS1317_3" }, { "dataset_id": "GDS1317", "description": "high shear stress", "sample_id": [ "GSM26291", "GSM26292" ], "type": "stress", "id": "GDS1317_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1317", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1317.tab", "compression": "gz" } ], [ [ "GDS1318.tab" ], { "title": "Hormone-sensitive lipase inactivation effect on muscle", "description": "Expression profiling of soleus muscle from females lacking the hormone-sensitive lipase (HSL) gene. HSL is a key enzyme in fatty acid mobilization in adipocytes and found to be active in skeletal muscle. Results provide insight into the role of HSL in muscle lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "16199803", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1772", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1318", "description": "wild type", "sample_id": [ "GSM30724", "GSM30725" ], "type": "genotype/variation", "id": "GDS1318_1" }, { "dataset_id": "GDS1318", "description": "HSL null", "sample_id": [ "GSM30726", "GSM30727" ], "type": "genotype/variation", "id": "GDS1318_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1318", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1318.tab", "compression": "gz" } ], [ [ "GDS1319.tab" ], { "title": "Lineage-specific regulatory network specified by PAL-1", "description": "Various C blastomere mutant embryos analyzed to deconvolve C blastomere lineage-specific expression patterns specified by the PAL-1 homeodomain protein. Embryonic tissue examined at various time points from the 4-cell stage (0 minutes) to 186 minutes.", "type": "Expression profiling by array", "pubmed_id": "15772128", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "123", "value_type": "transformed count", "reference_series": "GSE2180", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1319", "description": "wild type", "sample_id": [ "GSM39513", "GSM39514", "GSM39515", "GSM39516", "GSM39517", "GSM39518", "GSM39519", "GSM39520", "GSM39521", "GSM39522", "GSM39523", "GSM39524", "GSM39525", "GSM39526", "GSM39527", "GSM39528", "GSM39529", "GSM39530", "GSM39531", "GSM39532", "GSM39533", "GSM39534", "GSM39535", "GSM39536", "GSM39537", "GSM39538", "GSM39539", "GSM39540", "GSM39541", "GSM39542", "GSM39543", "GSM39544", "GSM39545", "GSM39546" ], "type": "genotype/variation", "id": "GDS1319_1" }, { "dataset_id": "GDS1319", "description": "pie-1(zu154)", "sample_id": [ "GSM39459", "GSM39460", "GSM39461", "GSM39462", "GSM39463", "GSM39464", "GSM39465", "GSM39466", "GSM39467", "GSM39468", "GSM39469", "GSM39470", "GSM39471", "GSM39472", "GSM39473", "GSM39474", "GSM39475", "GSM39476", "GSM39477", "GSM39478", "GSM39479", "GSM39480", "GSM39481", "GSM39482", "GSM39483", "GSM39484", "GSM39547" ], "type": "genotype/variation", "id": "GDS1319_2" }, { "dataset_id": "GDS1319", "description": "pie-1(zu154)+pal-1(RNAi)", "sample_id": [ "GSM39425", "GSM39426", "GSM39427", "GSM39428", "GSM39429", "GSM39430", "GSM39431", "GSM39432", "GSM39433", "GSM39434", "GSM39435", "GSM39436", "GSM39437", "GSM39438", "GSM39439", "GSM39485", "GSM39486", "GSM39487", "GSM39488", "GSM39489", "GSM39490", "GSM39491", "GSM39492", "GSM39493", "GSM39494", "GSM39495", "GSM39496", "GSM39497", "GSM39498", "GSM39499", "GSM39500", "GSM39501", "GSM39502", "GSM39503" ], "type": "genotype/variation", "id": "GDS1319_3" }, { "dataset_id": "GDS1319", "description": "mex-3(zu155)+skn-1(RNAi)", "sample_id": [ "GSM39440", "GSM39441", "GSM39442", "GSM39443", "GSM39444", "GSM39445", "GSM39446", "GSM39447", "GSM39448", "GSM39449", "GSM39450", "GSM39451", "GSM39452", "GSM39453", "GSM39454", "GSM39455", "GSM39456", "GSM39457", "GSM39458", "GSM39504", "GSM39505", "GSM39506", "GSM39507", "GSM39508", "GSM39509", "GSM39510", "GSM39511", "GSM39512" ], "type": "genotype/variation", "id": "GDS1319_4" }, { "dataset_id": "GDS1319", "description": "0 min", "sample_id": [ "GSM39425", "GSM39433", "GSM39445", "GSM39451", "GSM39468", "GSM39477", "GSM39485", "GSM39495", "GSM39504", "GSM39513", "GSM39514", "GSM39515" ], "type": "time", "id": "GDS1319_5" }, { "dataset_id": "GDS1319", "description": "23 min", "sample_id": [ "GSM39434", "GSM39459", "GSM39469", "GSM39478", "GSM39486", "GSM39496", "GSM39505", "GSM39508", "GSM39516", "GSM39517", "GSM39518", "GSM39519" ], "type": "time", "id": "GDS1319_6" }, { "dataset_id": "GDS1319", "description": "41 min", "sample_id": [ "GSM39426", "GSM39435", "GSM39440", "GSM39460", "GSM39470", "GSM39479", "GSM39487", "GSM39497", "GSM39506", "GSM39509", "GSM39520", "GSM39521", "GSM39542" ], "type": "time", "id": "GDS1319_7" }, { "dataset_id": "GDS1319", "description": "53 min", "sample_id": [ "GSM39427", "GSM39436", "GSM39443", "GSM39452", "GSM39461", "GSM39471", "GSM39488", "GSM39522", "GSM39523", "GSM39524", "GSM39543" ], "type": "time", "id": "GDS1319_8" }, { "dataset_id": "GDS1319", "description": "66 min", "sample_id": [ "GSM39428", "GSM39437", "GSM39441", "GSM39446", "GSM39462", "GSM39472", "GSM39489", "GSM39498", "GSM39525", "GSM39526", "GSM39530", "GSM39531", "GSM39547" ], "type": "time", "id": "GDS1319_9" }, { "dataset_id": "GDS1319", "description": "83 min", "sample_id": [ "GSM39429", "GSM39447", "GSM39453", "GSM39455", "GSM39456", "GSM39463", "GSM39480", "GSM39490", "GSM39499", "GSM39527", "GSM39528", "GSM39529", "GSM39544" ], "type": "time", "id": "GDS1319_10" }, { "dataset_id": "GDS1319", "description": "101 min", "sample_id": [ "GSM39444", "GSM39464", "GSM39473", "GSM39481", "GSM39491", "GSM39500", "GSM39510", "GSM39532", "GSM39533", "GSM39545" ], "type": "time", "id": "GDS1319_11" }, { "dataset_id": "GDS1319", "description": "122 min", "sample_id": [ "GSM39430", "GSM39442", "GSM39448", "GSM39465", "GSM39474", "GSM39482", "GSM39492", "GSM39501", "GSM39502", "GSM39507", "GSM39511", "GSM39534", "GSM39535", "GSM39546" ], "type": "time", "id": "GDS1319_12" }, { "dataset_id": "GDS1319", "description": "143 min", "sample_id": [ "GSM39431", "GSM39438", "GSM39449", "GSM39466", "GSM39475", "GSM39483", "GSM39493", "GSM39512", "GSM39536", "GSM39537", "GSM39538" ], "type": "time", "id": "GDS1319_13" }, { "dataset_id": "GDS1319", "description": "186 min", "sample_id": [ "GSM39432", "GSM39439", "GSM39450", "GSM39454", "GSM39457", "GSM39458", "GSM39467", "GSM39476", "GSM39484", "GSM39494", "GSM39503", "GSM39539", "GSM39540", "GSM39541" ], "type": "time", "id": "GDS1319_14" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS1319", "version": 1.0, "instances": "123", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1319.tab", "compression": "gz" } ], [ [ "GDS1320.tab" ], { "title": "Scott syndrome B lymphoblast response to calcium ionophore", "description": "Analysis of Scott B lymphoblasts after calcium ionophore A23187 treatment. Lymphoblasts derived from a patient with Scott syndrome, a hemorrhagic disease. Results provide insight into the mechanisms underlying the apoptotic effect of A23187, and susceptibility of Scott B lymphoblasts to apoptosis.", "type": "Expression profiling by array", "pubmed_id": "16242039", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1028", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1320", "description": "unrelated control", "sample_id": [ "GSM16509", "GSM16511", "GSM16513", "GSM16515" ], "type": "individual", "id": "GDS1320_1" }, { "dataset_id": "GDS1320", "description": "daughter", "sample_id": [ "GSM16516", "GSM16517", "GSM16518", "GSM16530" ], "type": "individual", "id": "GDS1320_2" }, { "dataset_id": "GDS1320", "description": "mother", "sample_id": [ "GSM16519", "GSM16520", "GSM16521", "GSM16522" ], "type": "individual", "id": "GDS1320_3" }, { "dataset_id": "GDS1320", "description": "normal", "sample_id": [ "GSM16509", "GSM16511", "GSM16513", "GSM16515" ], "type": "disease state", "id": "GDS1320_4" }, { "dataset_id": "GDS1320", "description": "unknown", "sample_id": [ "GSM16516", "GSM16517", "GSM16518", "GSM16530" ], "type": "disease state", "id": "GDS1320_5" }, { "dataset_id": "GDS1320", "description": "Scott syndrome", "sample_id": [ "GSM16519", "GSM16520", "GSM16521", "GSM16522" ], "type": "disease state", "id": "GDS1320_6" }, { "dataset_id": "GDS1320", "description": "untreated", "sample_id": [ "GSM16509", "GSM16513", "GSM16516", "GSM16517", "GSM16519", "GSM16520" ], "type": "agent", "id": "GDS1320_7" }, { "dataset_id": "GDS1320", "description": "calcium ionophore A23187", "sample_id": [ "GSM16511", "GSM16515", "GSM16518", "GSM16521", "GSM16522", "GSM16530" ], "type": "agent", "id": "GDS1320_8" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1320", "version": 1.0, "instances": "12", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1320.tab", "compression": "gz" } ], [ [ "GDS1321.tab" ], { "title": "Barrett's metaplasia progression to adenocarcinoma", "description": "Expression profiling of normal esophageal epithelium, premalignant Barrett's metaplasia, and esophageal adenocarcinoma samples. Tissue samples of each type obtained from 8 patients by transhiatal esophagectomy. Results identify potential markers of disease progression.", "type": "Expression profiling by array", "pubmed_id": "15833844", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1420", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1321", "description": "normal", "sample_id": [ "GSM23385", "GSM23386", "GSM23387", "GSM23388", "GSM23389", "GSM23390", "GSM23391", "GSM23392" ], "type": "disease state", "id": "GDS1321_1" }, { "dataset_id": "GDS1321", "description": "Barrett's esophagus", "sample_id": [ "GSM23395", "GSM23396", "GSM23397", "GSM23398", "GSM23399", "GSM23400", "GSM23401", "GSM23402" ], "type": "disease state", "id": "GDS1321_2" }, { "dataset_id": "GDS1321", "description": "adenocarcinoma", "sample_id": [ "GSM23413", "GSM23417", "GSM23419", "GSM23422", "GSM23424", "GSM23425", "GSM23426", "GSM23427" ], "type": "disease state", "id": "GDS1321_3" }, { "dataset_id": "GDS1321", "description": "patient 1", "sample_id": [ "GSM23385", "GSM23395", "GSM23413" ], "type": "individual", "id": "GDS1321_4" }, { "dataset_id": "GDS1321", "description": "patient 2", "sample_id": [ "GSM23386", "GSM23396", "GSM23417" ], "type": "individual", "id": "GDS1321_5" }, { "dataset_id": "GDS1321", "description": "patient 3", "sample_id": [ "GSM23387", "GSM23397", "GSM23419" ], "type": "individual", "id": "GDS1321_6" }, { "dataset_id": "GDS1321", "description": "patient 4", "sample_id": [ "GSM23388", "GSM23398", "GSM23422" ], "type": "individual", "id": "GDS1321_7" }, { "dataset_id": "GDS1321", "description": "patient 5", "sample_id": [ "GSM23389", "GSM23399", "GSM23424" ], "type": "individual", "id": "GDS1321_8" }, { "dataset_id": "GDS1321", "description": "patient 6", "sample_id": [ "GSM23390", "GSM23400", "GSM23425" ], "type": "individual", "id": "GDS1321_9" }, { "dataset_id": "GDS1321", "description": "patient 7", "sample_id": [ "GSM23391", "GSM23401", "GSM23426" ], "type": "individual", "id": "GDS1321_10" }, { "dataset_id": "GDS1321", "description": "patient 8", "sample_id": [ "GSM23392", "GSM23402", "GSM23427" ], "type": "individual", "id": "GDS1321_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1321", "version": 1.0, "instances": "24", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1321.tab", "compression": "gz" } ], [ [ "GDS1323.tab" ], { "title": "Hair follicle and skin molecular signatures", "description": "Comparison of hair follicle matrix, outer root sheath, dermal papilla cells, melanocytes, and a dermal fraction enriched in fibroblasts were FACS-isolated from 4 day old Lef1-RFP/K14-H2BGFP backskins. Contributes to molecular dissection of mesenchymal-epithelial interactions in the hair follicle.", "type": "Expression profiling by array", "pubmed_id": "16162033", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3142", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1323", "description": "matrix", "sample_id": [ "GSM70236", "GSM70237" ], "type": "cell type", "id": "GDS1323_1" }, { "dataset_id": "GDS1323", "description": "outer root sheath", "sample_id": [ "GSM70238", "GSM70239" ], "type": "cell type", "id": "GDS1323_2" }, { "dataset_id": "GDS1323", "description": "dermal fibroblasts", "sample_id": [ "GSM70240", "GSM70241" ], "type": "cell type", "id": "GDS1323_3" }, { "dataset_id": "GDS1323", "description": "dermal papilla", "sample_id": [ "GSM70242", "GSM70243" ], "type": "cell type", "id": "GDS1323_4" }, { "dataset_id": "GDS1323", "description": "melanocytes", "sample_id": [ "GSM70244", "GSM70245" ], "type": "cell type", "id": "GDS1323_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1323", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1323.tab", "compression": "gz" } ], [ [ "GDS1324.tab" ], { "title": "T-cell acute lymphoblastic leukemia with CALM-AF10 fusion", "description": "Analysis of T-cell acute lymphoblastic leukemia (ALL) samples containing t(10;11)(p13;q14-21) translocation that fuses the clathrin-assembly protein-like lymphoid-myeloid leukemia gene CALM to the transcription factor AF10. Results provide insight into the consequences of CALM-AF10 expression.", "type": "Expression profiling by array", "pubmed_id": "16107895", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE2117", "order": "none", "update_date": "Oct 03 2006", "subsets": [ { "dataset_id": "GDS1324", "description": "CALM-AF10 positive", "sample_id": [ "GSM38221", "GSM38222", "GSM38223", "GSM38224", "GSM38225", "GSM38226" ], "type": "genotype/variation", "id": "GDS1324_1" }, { "dataset_id": "GDS1324", "description": "CALM-AF10 negative", "sample_id": [ "GSM38216", "GSM38217", "GSM38218", "GSM38219", "GSM38220", "GSM38227", "GSM38228", "GSM38229", "GSM38230", "GSM38231", "GSM38232", "GSM38233", "GSM38234", "GSM38235", "GSM38236", "GSM38237", "GSM38238" ], "type": "genotype/variation", "id": "GDS1324_2" }, { "dataset_id": "GDS1324", "description": "bone marrow", "sample_id": [ "GSM38221", "GSM38222", "GSM38223", "GSM38224", "GSM38225", "GSM38216", "GSM38218", "GSM38220", "GSM38227", "GSM38228", "GSM38230", "GSM38231", "GSM38232", "GSM38233", "GSM38234", "GSM38236" ], "type": "tissue", "id": "GDS1324_3" }, { "dataset_id": "GDS1324", "description": "peripheral blood", "sample_id": [ "GSM38226", "GSM38217", "GSM38219", "GSM38229", "GSM38235", "GSM38237", "GSM38238" ], "type": "tissue", "id": "GDS1324_4" }, { "dataset_id": "GDS1324", "description": "no selection", "sample_id": [ "GSM38221", "GSM38223", "GSM38224", "GSM38225", "GSM38226", "GSM38216", "GSM38217", "GSM38218", "GSM38219", "GSM38220", "GSM38227", "GSM38229", "GSM38230", "GSM38231", "GSM38232", "GSM38233", "GSM38234", "GSM38236", "GSM38237", "GSM38238" ], "type": "protocol", "id": "GDS1324_5" }, { "dataset_id": "GDS1324", "description": "CD3 minus selection", "sample_id": [ "GSM38222", "GSM38228" ], "type": "protocol", "id": "GDS1324_6" }, { "dataset_id": "GDS1324", "description": "CD34 positive selection", "sample_id": [ "GSM38235" ], "type": "protocol", "id": "GDS1324_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1324", "version": 1.0, "instances": "23", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1324.tab", "compression": "gz" } ], [ [ "GDS1325.tab" ], { "title": "Telomerase reverse transcriptase overexpression effect on CD4+ lymphocytes", "description": "Analysis of CD4+ T cells overexpressing green fluorescent protein telomerase reverse transcriptase fusion protein (GFP-hTERT). hTERT encodes catalytic reverse transcriptase subunit of telomerase. Provides insight into long-term consequences of hTERT overexpression in T lymphocytes.", "type": "Expression profiling by array", "pubmed_id": "15741219", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2230", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1325", "description": "control", "sample_id": [ "GSM40879" ], "type": "agent", "id": "GDS1325_1" }, { "dataset_id": "GDS1325", "description": "GFP", "sample_id": [ "GSM40882" ], "type": "agent", "id": "GDS1325_2" }, { "dataset_id": "GDS1325", "description": "hTERT", "sample_id": [ "GSM40883", "GSM40884" ], "type": "agent", "id": "GDS1325_3" }, { "dataset_id": "GDS1325", "description": "32 doublings", "sample_id": [ "GSM40879" ], "type": "age", "id": "GDS1325_4" }, { "dataset_id": "GDS1325", "description": "44 doublings", "sample_id": [ "GSM40883" ], "type": "age", "id": "GDS1325_5" }, { "dataset_id": "GDS1325", "description": "47 doublings", "sample_id": [ "GSM40882" ], "type": "age", "id": "GDS1325_6" }, { "dataset_id": "GDS1325", "description": "80 doublings", "sample_id": [ "GSM40884" ], "type": "age", "id": "GDS1325_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1325", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1325.tab", "compression": "gz" } ], [ [ "GDS1326.tab" ], { "title": "Breast cancer cells reexpressing estrogen receptor alpha response to 17beta-estradiol", "description": "Analysis of the response of estrogen receptor (ER) negative MDA-MB-231 breast cancer cells infected with full-length ER alpha adenoviral constructs to treatment with 17beta-estradiol (E2). Results provide insight into the anti-proliferative effect of E2 on breast cancer cells reexpressing ER.", "type": "Expression profiling by array", "pubmed_id": "15821115", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2251", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1326", "description": "control", "sample_id": [ "GSM41352", "GSM41355", "GSM41353", "GSM41356", "GSM41354", "GSM41357" ], "type": "protocol", "id": "GDS1326_1" }, { "dataset_id": "GDS1326", "description": "ERalpha expression", "sample_id": [ "GSM41346", "GSM41349", "GSM41347", "GSM41350", "GSM41348", "GSM41351" ], "type": "protocol", "id": "GDS1326_2" }, { "dataset_id": "GDS1326", "description": "control", "sample_id": [ "GSM41349", "GSM41355", "GSM41350", "GSM41356", "GSM41351", "GSM41357" ], "type": "agent", "id": "GDS1326_3" }, { "dataset_id": "GDS1326", "description": "E2", "sample_id": [ "GSM41346", "GSM41352", "GSM41347", "GSM41353", "GSM41348", "GSM41354" ], "type": "agent", "id": "GDS1326_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1326", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1326.tab", "compression": "gz" } ], [ [ "GDS1327.tab" ], { "title": "Lens epithelial and lens cortical fiber cell comparison", "description": "Comparison of lens epithelial cells to lens cortical fiber cells. Cells microdissected from lenses of post mortem donors. Results identify genes that may play roles in maintaining the specialized functions of each cell type and provides insight into potential mechanisms of lens cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "15851978", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2256", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1327", "description": "lens epithelial", "sample_id": [ "GSM41472", "GSM41473", "GSM41474" ], "type": "tissue", "id": "GDS1327_1" }, { "dataset_id": "GDS1327", "description": "lens cortical fiber", "sample_id": [ "GSM41475", "GSM41476", "GSM41477" ], "type": "tissue", "id": "GDS1327_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1327", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1327.tab", "compression": "gz" } ], [ [ "GDS1328.tab" ], { "title": "Asthma model of prostaglandin E receptor EP3 effect on allergic inflammation", "description": "Analysis of lung treated with prostaglandin E2 (PGE2) receptor subtype EP3 agonist, ONO-AE-248 (AE-248), after ovalbumin (OVA)-sensitization and challenge. OVA induces allergic asthma. Results identify inhibitory role of PGE2-EP3 pathway in allergic inflammation and allergy-related gene expression.", "type": "Expression profiling by array", "pubmed_id": "15806106", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2276", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1328", "description": "saline", "sample_id": [ "GSM42223", "GSM42224", "GSM42225" ], "type": "agent", "id": "GDS1328_1" }, { "dataset_id": "GDS1328", "description": "OVA", "sample_id": [ "GSM42226", "GSM42227", "GSM42228" ], "type": "agent", "id": "GDS1328_2" }, { "dataset_id": "GDS1328", "description": "OVA_EP3agonist", "sample_id": [ "GSM42229", "GSM42230", "GSM42231" ], "type": "agent", "id": "GDS1328_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1328", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1328.tab", "compression": "gz" } ], [ [ "GDS1329.tab" ], { "title": "Molecular apocrine breast tumors", "description": "Analysis of tumors of 49 breast cancer patients. Tumors classified into luminal and basal classes, and a novel molecular apocrine class. Apocrine tumors are estrogen receptor negative (ER-) and androgen receptor positive (AR+), while luminal tumors are ER+ and AR+, and basal tumors are ER- and AR-.", "type": "Expression profiling by array", "pubmed_id": "15897907", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "49", "value_type": "transformed count", "reference_series": "GSE1561", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1329", "description": "apocrine tumor", "sample_id": [ "GSM26878", "GSM26883", "GSM26886", "GSM26887", "GSM26903", "GSM26910" ], "type": "disease state", "id": "GDS1329_1" }, { "dataset_id": "GDS1329", "description": "basal tumor", "sample_id": [ "GSM26871", "GSM26880", "GSM26882", "GSM26884", "GSM26888", "GSM26889", "GSM26892", "GSM26893", "GSM26895", "GSM26898", "GSM26900", "GSM26902", "GSM26905", "GSM26906", "GSM26908", "GSM26912" ], "type": "disease state", "id": "GDS1329_2" }, { "dataset_id": "GDS1329", "description": "luminal tumor", "sample_id": [ "GSM26804", "GSM26867", "GSM26868", "GSM26869", "GSM26870", "GSM26872", "GSM26873", "GSM26874", "GSM26875", "GSM26876", "GSM26877", "GSM26879", "GSM26881", "GSM26885", "GSM26890", "GSM26891", "GSM26894", "GSM26896", "GSM26897", "GSM26899", "GSM26901", "GSM26904", "GSM26907", "GSM26909", "GSM26911", "GSM26913", "GSM26914" ], "type": "disease state", "id": "GDS1329_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1329", "version": 1.0, "instances": "49", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1329.tab", "compression": "gz" } ], [ [ "GDS1330.tab" ], { "title": "Crohn disease and ulcerative colitis comparison", "description": "Expression profiling of mucosal biopsy samples from sigmoid colons of 10 patients with Crohn disease (CD) and 10 patients with ulcerative colitis (UC). CD and UC are two forms of inflammatory bowel disease. Results provide insight into the pathogenesis of CD and UC.", "type": "Expression profiling by array", "pubmed_id": "16107186", "platform": "GPL284", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "34560", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "transformed count", "reference_series": "GSE1710", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1330", "description": "normal", "sample_id": [ "GSM29595", "GSM29596", "GSM29597", "GSM29598", "GSM29599", "GSM29600", "GSM29601", "GSM29602", "GSM29603", "GSM29604", "GSM29605" ], "type": "disease state", "id": "GDS1330_1" }, { "dataset_id": "GDS1330", "description": "Crohn disease", "sample_id": [ "GSM29606", "GSM29607", "GSM29608", "GSM29609", "GSM29610", "GSM29611", "GSM29612", "GSM29613", "GSM29614", "GSM29615" ], "type": "disease state", "id": "GDS1330_2" }, { "dataset_id": "GDS1330", "description": "ulcerative colitis", "sample_id": [ "GSM29616", "GSM29617", "GSM29618", "GSM29619", "GSM29620", "GSM29621", "GSM29622", "GSM29623", "GSM29624", "GSM29625" ], "type": "disease state", "id": "GDS1330_3" } ], "taxid": "9606", "genes": 26286, "aggregation_function": "mean", "name": "GDS1330", "version": 1.0, "instances": "31", "variables": 26288, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1330.tab", "compression": "gz" } ], [ [ "GDS1331.tab" ], { "title": "Huntington's disease: peripheral blood expression profile (HG-U133A)", "description": "Analysis of blood samples of 5 presymptomatic and 12 symptomatic Huntington's disease (HD) patients. Studies suggest that gene expression may be altered in a variety of tissues in HD, including peripheral blood. Results identify potential markers for HD.", "type": "Expression profiling by array", "pubmed_id": "16043692", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE1751", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1331", "description": "normal", "sample_id": [ "GSM30580", "GSM30581", "GSM30582", "GSM30583", "GSM30584", "GSM30585", "GSM30586", "GSM30587", "GSM30588", "GSM30589", "GSM30590", "GSM30591", "GSM30592", "GSM30593" ], "type": "disease state", "id": "GDS1331_1" }, { "dataset_id": "GDS1331", "description": "presymptomatic", "sample_id": [ "GSM30542", "GSM30543", "GSM30544", "GSM30545", "GSM30546" ], "type": "disease state", "id": "GDS1331_2" }, { "dataset_id": "GDS1331", "description": "symptomatic", "sample_id": [ "GSM30530", "GSM30531", "GSM30532", "GSM30533", "GSM30534", "GSM30535", "GSM30536", "GSM30537", "GSM30538", "GSM30539", "GSM30540", "GSM30541" ], "type": "disease state", "id": "GDS1331_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1331", "version": 1.0, "instances": "31", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1331.tab", "compression": "gz" } ], [ [ "GDS1332.tab" ], { "title": "Huntington's disease: peripheral blood expression profile (Codelink Uniset 20K)", "description": "Analysis of blood samples of 5 presymptomatic and 12 symptomatic Huntington's disease (HD) patients. Studies suggest that gene expression may be altered in a variety of tissues in HD, including peripheral blood. Results identify potential markers for HD.", "type": "Expression profiling by array", "pubmed_id": "16043692", "platform": "GPL1449", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19881", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "transformed count", "reference_series": "GSE1767", "order": "none", "update_date": "Dec 02 2005", "subsets": [ { "dataset_id": "GDS1332", "description": "normal", "sample_id": [ "GSM30698", "GSM30699", "GSM30700", "GSM30701", "GSM30702", "GSM30703", "GSM30704", "GSM30705", "GSM30706", "GSM30707", "GSM30708", "GSM30709", "GSM30710", "GSM30711" ], "type": "disease state", "id": "GDS1332_1" }, { "dataset_id": "GDS1332", "description": "presymptomatic", "sample_id": [ "GSM30693", "GSM30694", "GSM30695", "GSM30696", "GSM30697" ], "type": "disease state", "id": "GDS1332_2" }, { "dataset_id": "GDS1332", "description": "symptomatic", "sample_id": [ "GSM30681", "GSM30682", "GSM30683", "GSM30684", "GSM30685", "GSM30686", "GSM30687", "GSM30688", "GSM30689", "GSM30690", "GSM30691", "GSM30692" ], "type": "disease state", "id": "GDS1332_3" } ], "taxid": "9606", "genes": 16277, "aggregation_function": "mean", "name": "GDS1332", "version": 1.0, "instances": "31", "variables": 16279, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1332.tab", "compression": "gz" } ], [ [ "GDS1333.tab" ], { "title": "Duchenne Muscular Dystrophy response to oxandrolone (HG-U133A)", "description": "Analysis of gastrocnemius muscle biopsy specimens from Duchenne muscular dystrophy (DMD) patients before and after 3 months of treatment with 0.1mg/kg/day oxandrolone, a synthetic anabolic steroid. Results provide insight into mechanisms underlying the beneficial effect of oxandrolone in DMD.", "type": "Expression profiling by array", "pubmed_id": "16263771", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1764", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1333", "description": "baseline", "sample_id": [ "GSM30669", "GSM30670", "GSM30671" ], "type": "agent", "id": "GDS1333_1" }, { "dataset_id": "GDS1333", "description": "oxandrolone", "sample_id": [ "GSM30672", "GSM30673", "GSM30674" ], "type": "agent", "id": "GDS1333_2" }, { "dataset_id": "GDS1333", "description": "subject 1", "sample_id": [ "GSM30669", "GSM30672" ], "type": "individual", "id": "GDS1333_3" }, { "dataset_id": "GDS1333", "description": "subject 2", "sample_id": [ "GSM30670", "GSM30673" ], "type": "individual", "id": "GDS1333_4" }, { "dataset_id": "GDS1333", "description": "subject 3", "sample_id": [ "GSM30671", "GSM30674" ], "type": "individual", "id": "GDS1333_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1333", "version": 1.0, "instances": "6", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1333.tab", "compression": "gz" } ], [ [ "GDS1334.tab" ], { "title": "Duchenne Muscular Dystrophy response to oxandrolone (HG-U133B)", "description": "Analysis of gastrocnemius muscle biopsy specimens from Duchenne muscular dystrophy (DMD) patients before and after 3 months of treatment with 0.1mg/kg/day oxandrolone, a synthetic anabolic steroid. Results provide insight into mechanisms underlying the beneficial effect of oxandrolone in DMD.", "type": "Expression profiling by array", "pubmed_id": "16263771", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1764", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1334", "description": "baseline", "sample_id": [ "GSM30675", "GSM30676", "GSM30677" ], "type": "agent", "id": "GDS1334_1" }, { "dataset_id": "GDS1334", "description": "oxandrolone", "sample_id": [ "GSM30678", "GSM30679", "GSM30680" ], "type": "agent", "id": "GDS1334_2" }, { "dataset_id": "GDS1334", "description": "subject 1", "sample_id": [ "GSM30675", "GSM30678" ], "type": "individual", "id": "GDS1334_3" }, { "dataset_id": "GDS1334", "description": "subject 2", "sample_id": [ "GSM30676", "GSM30679" ], "type": "individual", "id": "GDS1334_4" }, { "dataset_id": "GDS1334", "description": "subject 3", "sample_id": [ "GSM30677", "GSM30680" ], "type": "individual", "id": "GDS1334_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1334", "version": 1.0, "instances": "6", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1334.tab", "compression": "gz" } ], [ [ "GDS1336.tab" ], { "title": "T cell anergy induction regulation by Egr-2 and Egr-3 (MG-U74A)", "description": "Analysis of pooled mRNA (2, 4, 6 hours) from A.E7 T cell clones activated in conditions that promote (anti-TCR) or inhibit (anti-TCR + CsA or PKCi or Combo) anergy induction. Results identify the early growth response gene 2 (Egr-2) and Egr-3 as key positive regulators of T cell anergy induction.", "type": "Expression profiling by array", "pubmed_id": "15834410", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2323", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1336", "description": "untreated", "sample_id": [ "GSM42991" ], "type": "agent", "id": "GDS1336_1" }, { "dataset_id": "GDS1336", "description": "anti-TCR", "sample_id": [ "GSM42996" ], "type": "agent", "id": "GDS1336_2" }, { "dataset_id": "GDS1336", "description": "anti-TCR + CsA", "sample_id": [ "GSM42997" ], "type": "agent", "id": "GDS1336_3" }, { "dataset_id": "GDS1336", "description": "anti-TCR + PKCi", "sample_id": [ "GSM42998" ], "type": "agent", "id": "GDS1336_4" }, { "dataset_id": "GDS1336", "description": "anti-TCR + Combo", "sample_id": [ "GSM43013" ], "type": "agent", "id": "GDS1336_5" }, { "dataset_id": "GDS1336", "description": "mock", "sample_id": [ "GSM42991" ], "type": "protocol", "id": "GDS1336_6" }, { "dataset_id": "GDS1336", "description": "stimulatory", "sample_id": [ "GSM42996" ], "type": "protocol", "id": "GDS1336_7" }, { "dataset_id": "GDS1336", "description": "inhibitory", "sample_id": [ "GSM42997", "GSM42998", "GSM43013" ], "type": "protocol", "id": "GDS1336_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1336", "version": 1.0, "instances": "5", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1336.tab", "compression": "gz" } ], [ [ "GDS1338.tab" ], { "title": "T cell anergy induction regulation by Egr-2 and Egr-3 (MG-U74B)", "description": "Analysis of pooled mRNA (2, 4, 6 hours) from A.E7 T cell clones activated in conditions that promote (anti-TCR) or inhibit (anti-TCR + CsA or PKCi or Combo) anergy induction. Results identify the early growth response gene 2 (Egr-2) and Egr-3 as key positive regulators of T cell anergy induction.", "type": "Expression profiling by array", "pubmed_id": "15834410", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2323", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1338", "description": "untreated", "sample_id": [ "GSM43014" ], "type": "agent", "id": "GDS1338_1" }, { "dataset_id": "GDS1338", "description": "anti-TCR", "sample_id": [ "GSM43015" ], "type": "agent", "id": "GDS1338_2" }, { "dataset_id": "GDS1338", "description": "anti-TCR + CsA", "sample_id": [ "GSM43016" ], "type": "agent", "id": "GDS1338_3" }, { "dataset_id": "GDS1338", "description": "anti-TCR + PKCi", "sample_id": [ "GSM43017" ], "type": "agent", "id": "GDS1338_4" }, { "dataset_id": "GDS1338", "description": "anti-TCR + Combo", "sample_id": [ "GSM43018" ], "type": "agent", "id": "GDS1338_5" }, { "dataset_id": "GDS1338", "description": "mock", "sample_id": [ "GSM43014" ], "type": "protocol", "id": "GDS1338_6" }, { "dataset_id": "GDS1338", "description": "stimulatory", "sample_id": [ "GSM43015" ], "type": "protocol", "id": "GDS1338_7" }, { "dataset_id": "GDS1338", "description": "inhibitory", "sample_id": [ "GSM43016", "GSM43017", "GSM43018" ], "type": "protocol", "id": "GDS1338_8" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1338", "version": 1.0, "instances": "5", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1338.tab", "compression": "gz" } ], [ [ "GDS1339.tab" ], { "title": "T cell anergy induction regulation by Egr-2 and Egr-3 (MG-U74C)", "description": "Analysis of pooled mRNA (2, 4, 6 hours) from A.E7 T cell clones activated in conditions that promote (anti-TCR) or inhibit (anti-TCR + CsA or PKCi or Combo) anergy induction. Results identify the early growth response gene 2 (Egr-2) and Egr-3 as key positive regulators of T cell anergy induction.", "type": "Expression profiling by array", "pubmed_id": "15834410", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2323", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1339", "description": "untreated", "sample_id": [ "GSM43019" ], "type": "agent", "id": "GDS1339_1" }, { "dataset_id": "GDS1339", "description": "anti-TCR", "sample_id": [ "GSM43020" ], "type": "agent", "id": "GDS1339_2" }, { "dataset_id": "GDS1339", "description": "anti-TCR + CsA", "sample_id": [ "GSM43021" ], "type": "agent", "id": "GDS1339_3" }, { "dataset_id": "GDS1339", "description": "anti-TCR + PKCi", "sample_id": [ "GSM43022" ], "type": "agent", "id": "GDS1339_4" }, { "dataset_id": "GDS1339", "description": "anti-TCR + Combo", "sample_id": [ "GSM43023" ], "type": "agent", "id": "GDS1339_5" }, { "dataset_id": "GDS1339", "description": "mock", "sample_id": [ "GSM43019" ], "type": "protocol", "id": "GDS1339_6" }, { "dataset_id": "GDS1339", "description": "stimulatory", "sample_id": [ "GSM43020" ], "type": "protocol", "id": "GDS1339_7" }, { "dataset_id": "GDS1339", "description": "inhibitory", "sample_id": [ "GSM43021", "GSM43022", "GSM43023" ], "type": "protocol", "id": "GDS1339_8" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1339", "version": 1.0, "instances": "5", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1339.tab", "compression": "gz" } ], [ [ "GDS1340.tab" ], { "title": "Exercise effect on aged muscle", "description": "Expression profiling of vastus lateralis muscles from 6 healthy, elderly, sedentary males after 3 months of exercise at 80% of maximal capacity. Results provide insight into the molecular changes induced by exercise in sedentary skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "16260967", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1786", "order": "none", "update_date": "Nov 09 2005", "subsets": [ { "dataset_id": "GDS1340", "description": "individual 1", "sample_id": [ "GSM30837", "GSM30843" ], "type": "individual", "id": "GDS1340_1" }, { "dataset_id": "GDS1340", "description": "individual 2", "sample_id": [ "GSM30840", "GSM30846" ], "type": "individual", "id": "GDS1340_2" }, { "dataset_id": "GDS1340", "description": "individual 3", "sample_id": [ "GSM30841", "GSM30847" ], "type": "individual", "id": "GDS1340_3" }, { "dataset_id": "GDS1340", "description": "individual 4", "sample_id": [ "GSM30839", "GSM30845" ], "type": "individual", "id": "GDS1340_4" }, { "dataset_id": "GDS1340", "description": "individual 5", "sample_id": [ "GSM30836", "GSM30842" ], "type": "individual", "id": "GDS1340_5" }, { "dataset_id": "GDS1340", "description": "individual 6", "sample_id": [ "GSM30838", "GSM30844" ], "type": "individual", "id": "GDS1340_6" }, { "dataset_id": "GDS1340", "description": "baseline", "sample_id": [ "GSM30842", "GSM30843", "GSM30844", "GSM30845", "GSM30846", "GSM30847" ], "type": "protocol", "id": "GDS1340_7" }, { "dataset_id": "GDS1340", "description": "3 m exercise", "sample_id": [ "GSM30836", "GSM30837", "GSM30838", "GSM30839", "GSM30840", "GSM30841" ], "type": "protocol", "id": "GDS1340_8" }, { "dataset_id": "GDS1340", "description": "56 y", "sample_id": [ "GSM30837", "GSM30843" ], "type": "age", "id": "GDS1340_9" }, { "dataset_id": "GDS1340", "description": "66 y", "sample_id": [ "GSM30840", "GSM30846" ], "type": "age", "id": "GDS1340_10" }, { "dataset_id": "GDS1340", "description": "67 y", "sample_id": [ "GSM30841", "GSM30847" ], "type": "age", "id": "GDS1340_11" }, { "dataset_id": "GDS1340", "description": "68 y", "sample_id": [ "GSM30839", "GSM30845" ], "type": "age", "id": "GDS1340_12" }, { "dataset_id": "GDS1340", "description": "72 y", "sample_id": [ "GSM30836", "GSM30842" ], "type": "age", "id": "GDS1340_13" }, { "dataset_id": "GDS1340", "description": "76 y", "sample_id": [ "GSM30838", "GSM30844" ], "type": "age", "id": "GDS1340_14" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1340", "version": 1.0, "instances": "12", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1340.tab", "compression": "gz" } ], [ [ "GDS1342.tab" ], { "title": "Forelimb and hindlimb embryonic autopod comparison (MG-430A)", "description": "Analysis of forelimb and hindlimb autopod tissues at embryonic day 12.5. Results provide insight into the molecular mechanisms regulating the formation of forelimbs and hindlimbs.", "type": "Expression profiling by array", "pubmed_id": "16059910", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2560", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1342", "description": "forelimb", "sample_id": [ "GSM48648", "GSM48912", "GSM48913" ], "type": "tissue", "id": "GDS1342_1" }, { "dataset_id": "GDS1342", "description": "hindlimb", "sample_id": [ "GSM48914", "GSM48915", "GSM48916" ], "type": "tissue", "id": "GDS1342_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1342", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1342.tab", "compression": "gz" } ], [ [ "GDS1343.tab" ], { "title": "Forelimb and hindlimb embryonic autopod comparison (MG-430B)", "description": "Analysis of forelimb and hindlimb autopod tissues at embryonic day 12.5. Results provide insight into the molecular mechanisms regulating the formation of forelimbs and hindlimbs.", "type": "Expression profiling by array", "pubmed_id": "16059910", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2560", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1343", "description": "forelimb", "sample_id": [ "GSM48911", "GSM48939", "GSM48942" ], "type": "tissue", "id": "GDS1343_1" }, { "dataset_id": "GDS1343", "description": "hindlimb", "sample_id": [ "GSM48940", "GSM48941", "GSM48943" ], "type": "tissue", "id": "GDS1343_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1343", "version": 1.0, "instances": "6", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1343.tab", "compression": "gz" } ], [ [ "GDS1344.tab" ], { "title": "Papillary renal cell carcinoma classification", "description": "Analysis of renal tumors from 34 papillary renal cell carcinoma (PRCC) cases. Results identify 2 molecular signatures that correlate with the morphologic classification of PRCC. Molecular class type 1 tumors correlate with excellent survival, while type 2 tumors correlate with poor survival.", "type": "Expression profiling by array", "pubmed_id": "15994935", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE2748", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1344", "description": "molecular class type 1", "sample_id": [ "GSM60242", "GSM60243", "GSM60244", "GSM60245", "GSM60246", "GSM60247", "GSM60248", "GSM60249", "GSM60250", "GSM60251", "GSM60252", "GSM60253", "GSM60254", "GSM60255", "GSM60257", "GSM60260", "GSM60261", "GSM60262", "GSM60266", "GSM60267", "GSM60268", "GSM60269" ], "type": "other", "id": "GDS1344_1" }, { "dataset_id": "GDS1344", "description": "molecular class type 2", "sample_id": [ "GSM60241", "GSM60256", "GSM60258", "GSM60259", "GSM60263", "GSM60264", "GSM60265", "GSM60270", "GSM60271", "GSM60272", "GSM60273", "GSM60274" ], "type": "other", "id": "GDS1344_2" }, { "dataset_id": "GDS1344", "description": "histologic class 1", "sample_id": [ "GSM60242", "GSM60243", "GSM60246", "GSM60247", "GSM60248", "GSM60249", "GSM60250", "GSM60251", "GSM60252", "GSM60253", "GSM60254", "GSM60257", "GSM60260", "GSM60269" ], "type": "disease state", "id": "GDS1344_3" }, { "dataset_id": "GDS1344", "description": "histologic class 1 and 2A", "sample_id": [ "GSM60245", "GSM60255", "GSM60262", "GSM60267", "GSM60268" ], "type": "disease state", "id": "GDS1344_4" }, { "dataset_id": "GDS1344", "description": "histologic class 2A", "sample_id": [ "GSM60244", "GSM60261", "GSM60266", "GSM60270" ], "type": "disease state", "id": "GDS1344_5" }, { "dataset_id": "GDS1344", "description": "histologic class 2B", "sample_id": [ "GSM60241", "GSM60256", "GSM60258", "GSM60259", "GSM60263", "GSM60264", "GSM60265", "GSM60271", "GSM60272", "GSM60273", "GSM60274" ], "type": "disease state", "id": "GDS1344_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1344", "version": 1.0, "instances": "34", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1344.tab", "compression": "gz" } ], [ [ "GDS1346.tab" ], { "title": "Bruton's tyrosine kinase mutant models of X-linked agammaglobulinemia", "description": "Analysis of splenic B cells from mutants with a knockout of Bruton's tyrosine kinase (Btk) or a R28C missense mutation in Btk. Btk mutations cause a block in B cell differentiation and lead to X-linked agammaglobulinemia (XLA). Results provide insight into the pathogenesis of XLA.", "type": "Expression profiling by array", "pubmed_id": "15214046", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2826", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1346", "description": "wild type", "sample_id": [ "GSM61837", "GSM61838" ], "type": "genotype/variation", "id": "GDS1346_1" }, { "dataset_id": "GDS1346", "description": "Btk R28C missense", "sample_id": [ "GSM61839", "GSM61840" ], "type": "genotype/variation", "id": "GDS1346_2" }, { "dataset_id": "GDS1346", "description": "Btk KO", "sample_id": [ "GSM61841", "GSM61842" ], "type": "genotype/variation", "id": "GDS1346_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1346", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1346.tab", "compression": "gz" } ], [ [ "GDS1347.tab" ], { "title": "Neurogenic potential of mesenchymal stem cells", "description": "Comparison of mesenchymal stem cells (MSC) treated with dimethylsulphoxide and butylated hydroxyanisole (DMSO/BHA) for 6 or 48 hours to fetal brain (positive control) or adult liver (negative control). Results raise doubts about the DMSO/BHA protocol for generating neural cells from MSCs.", "type": "Expression profiling by array", "pubmed_id": "16091422", "platform": "GPL2136", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "46752", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log2 ratio", "reference_series": "GSE2776", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1347", "description": "MSC", "sample_id": [ "GSM60436", "GSM60437", "GSM60438", "GSM60440", "GSM60442", "GSM60444" ], "type": "cell type", "id": "GDS1347_1" }, { "dataset_id": "GDS1347", "description": "fetal brain", "sample_id": [ "GSM60433", "GSM60434" ], "type": "cell type", "id": "GDS1347_2" }, { "dataset_id": "GDS1347", "description": "adult liver", "sample_id": [ "GSM60448", "GSM60450", "GSM60451" ], "type": "cell type", "id": "GDS1347_3" }, { "dataset_id": "GDS1347", "description": "DMSO/BHA", "sample_id": [ "GSM60436", "GSM60437", "GSM60438", "GSM60440", "GSM60442", "GSM60444" ], "type": "agent", "id": "GDS1347_4" }, { "dataset_id": "GDS1347", "description": "control", "sample_id": [ "GSM60433", "GSM60434", "GSM60448", "GSM60450", "GSM60451" ], "type": "agent", "id": "GDS1347_5" }, { "dataset_id": "GDS1347", "description": "control", "sample_id": [ "GSM60433", "GSM60434", "GSM60448", "GSM60450", "GSM60451" ], "type": "time", "id": "GDS1347_6" }, { "dataset_id": "GDS1347", "description": "6 h", "sample_id": [ "GSM60436", "GSM60437", "GSM60438" ], "type": "time", "id": "GDS1347_7" }, { "dataset_id": "GDS1347", "description": "48 h", "sample_id": [ "GSM60440", "GSM60442", "GSM60444" ], "type": "time", "id": "GDS1347_8" } ], "taxid": "9606", "genes": 22427, "aggregation_function": "mean", "name": "GDS1347", "version": 1.0, "instances": "11", "variables": 22431, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1347.tab", "compression": "gz" } ], [ [ "GDS1348.tab" ], { "title": "Cigarette smoke effect on bronchial epithelial cells: time course", "description": "Analysis of cultured normal bronchial epithelial cells 4 and 24 hours after exposure to 15 minutes of cigarette smoke in order to better understand molecular impact of tobacco exposure.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1872", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22464", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE2302", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1348", "description": "control", "sample_id": [ "GSM42273", "GSM42274", "GSM42275", "GSM42276", "GSM42277", "GSM42285", "GSM42286", "GSM42287", "GSM42288" ], "type": "agent", "id": "GDS1348_1" }, { "dataset_id": "GDS1348", "description": "cigarette smoke", "sample_id": [ "GSM42278", "GSM42279", "GSM42280", "GSM42281", "GSM42282", "GSM42283", "GSM42284", "GSM42289", "GSM42290" ], "type": "agent", "id": "GDS1348_2" }, { "dataset_id": "GDS1348", "description": "4 h", "sample_id": [ "GSM42273", "GSM42274", "GSM42278", "GSM42279", "GSM42285", "GSM42286", "GSM42289", "GSM42290" ], "type": "time", "id": "GDS1348_3" }, { "dataset_id": "GDS1348", "description": "24 h", "sample_id": [ "GSM42275", "GSM42276", "GSM42277", "GSM42280", "GSM42281", "GSM42282", "GSM42283", "GSM42284", "GSM42287", "GSM42288" ], "type": "time", "id": "GDS1348_4" } ], "taxid": "9606", "genes": 19371, "aggregation_function": "mean", "name": "GDS1348", "version": 1.0, "instances": "18", "variables": 19374, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1348.tab", "compression": "gz" } ], [ [ "GDS1349.tab" ], { "title": "NADPH-cytochrome P450 reductase-loss transgenic models: hepatic expression profiling", "description": "Analysis of liver in two NADPH-cytochrome P450 reductase (CPR)-loss transgenic models: liver-Cpr-null (liver-specific Cpr deletion) and Cpr-low (global Cpr suppression). Results provide insight into potential mechanisms underlying altered hepatic gene expression related to CPR-deficiency.", "type": "Expression profiling by array", "pubmed_id": "16006652", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2362", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1349", "description": "Cpr-lox control", "sample_id": [ "GSM44308", "GSM44707", "GSM44708" ], "type": "genotype/variation", "id": "GDS1349_1" }, { "dataset_id": "GDS1349", "description": "Cpr-low", "sample_id": [ "GSM44709", "GSM44710", "GSM44711" ], "type": "genotype/variation", "id": "GDS1349_2" }, { "dataset_id": "GDS1349", "description": "liver-Cpr-null", "sample_id": [ "GSM44712", "GSM44713", "GSM44714" ], "type": "genotype/variation", "id": "GDS1349_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1349", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1349.tab", "compression": "gz" } ], [ [ "GDS135.tab" ], { "title": "Diurnal and circadian-regulated genes (II)", "description": "Analysis of plant molecular response to day/night cycling. Samples taken at 6 hour intervals throughout the day. Identification of genes that cycle with either a diurnal or a circadian pattern.", "type": "Expression profiling by array", "pubmed_id": "11158533", "platform": "GPL13", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12800", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE4", "order": "ordered", "update_date": "Apr 06 2003", "subsets": [ { "dataset_id": "GDS135", "description": "6 hour", "sample_id": [ "GSM428" ], "type": "time", "id": "GDS135_1" }, { "dataset_id": "GDS135", "description": "12 hour", "sample_id": [ "GSM429", "GSM433" ], "type": "time", "id": "GDS135_2" }, { "dataset_id": "GDS135", "description": "18 hour", "sample_id": [ "GSM423", "GSM430" ], "type": "time", "id": "GDS135_3" } ], "taxid": "3702", "genes": 7779, "aggregation_function": "mean", "name": "GDS135", "version": 1.0, "instances": "5", "variables": 7781, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS135.tab", "compression": "gz" } ], [ [ "GDS1350.tab" ], { "title": "SIR2 knockout effect on virulence gene family silencing and activation", "description": "Expression profiling of 3D7 silent information regulator 2 homolog (Sir2) knockout at ring stage, 8 hours post-invasion. Results identify Sir2-mediated, reversible heterochromatin silencing as one tier of epigenetic regulation of the antigenic variation var gene family.", "type": "Expression profiling by array", "pubmed_id": "15820675", "platform": "GPL1892", "platform_organism": "Plasmodium falciparum", "platform_technology_type": "in situ oligonucleotide", "feature_count": "5340", "sample_organism": "Plasmodium falciparum", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2369", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1350", "description": "wild type", "sample_id": [ "GSM44404", "GSM44405" ], "type": "genotype/variation", "id": "GDS1350_1" }, { "dataset_id": "GDS1350", "description": "delta_sir2 knockout", "sample_id": [ "GSM44406", "GSM44407" ], "type": "genotype/variation", "id": "GDS1350_2" } ], "taxid": "5833", "genes": 5057, "aggregation_function": "mean", "name": "GDS1350", "version": 1.0, "instances": "4", "variables": 5059, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1350.tab", "compression": "gz" } ], [ [ "GDS1351.tab" ], { "title": "Gastrin target genes in parietal cells", "description": "Analysis of gastrin knockout parietal cells isolated from the stomach fundus by flow cytometry. Results identify gastrin responsive genes and provide insight into the critical components of the acid secretory system.", "type": "Expression profiling by array", "pubmed_id": "16278279", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2772", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1351", "description": "wild type", "sample_id": [ "GSM60385", "GSM60386", "GSM60387" ], "type": "genotype/variation", "id": "GDS1351_1" }, { "dataset_id": "GDS1351", "description": "gastrin knockout", "sample_id": [ "GSM60388", "GSM60389", "GSM60390" ], "type": "genotype/variation", "id": "GDS1351_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1351", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1351.tab", "compression": "gz" } ], [ [ "GDS1352.tab" ], { "title": "Neuromuscular junction", "description": "Analysis of the neuromuscular junction (NMJ), a regionally specialized area of myofibers. NMJ regions isolated using laser capture microdissection. Results provide insight into the formation and maintenance of the NMJ.", "type": "Expression profiling by array", "pubmed_id": "15623565", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2394", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1352", "description": "non-NMJ", "sample_id": [ "GSM38543", "GSM38545" ], "type": "other", "id": "GDS1352_1" }, { "dataset_id": "GDS1352", "description": "NMJ", "sample_id": [ "GSM38542", "GSM38544" ], "type": "other", "id": "GDS1352_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1352", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1352.tab", "compression": "gz" } ], [ [ "GDS1353.tab" ], { "title": "Glucocorticoid effect on lens epithelial cells: time course", "description": "Analysis of cultured immortalized lens epithelial cells (LEC) 4 and 16 hours after treatment with 1 uM dexamethasone, a glucocorticoid steroid hormone. Long-term glucocorticoid use can induce cataract formation. Results identify glucocorticoid targets and short-term effects of glucocorticoid on LECs", "type": "Expression profiling by array", "pubmed_id": "16319822", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3040", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1353", "description": "control", "sample_id": [ "GSM66605", "GSM66606", "GSM66607", "GSM66611", "GSM66612", "GSM66613" ], "type": "agent", "id": "GDS1353_1" }, { "dataset_id": "GDS1353", "description": "dexamethasone", "sample_id": [ "GSM66608", "GSM66609", "GSM66610", "GSM66614", "GSM66615", "GSM66616" ], "type": "agent", "id": "GDS1353_2" }, { "dataset_id": "GDS1353", "description": "4 h", "sample_id": [ "GSM66605", "GSM66606", "GSM66607", "GSM66608", "GSM66609", "GSM66610" ], "type": "time", "id": "GDS1353_3" }, { "dataset_id": "GDS1353", "description": "16 h", "sample_id": [ "GSM66611", "GSM66612", "GSM66613", "GSM66614", "GSM66615", "GSM66616" ], "type": "time", "id": "GDS1353_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1353", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1353.tab", "compression": "gz" } ], [ [ "GDS1354.tab" ], { "title": "Cirrhosis and liver endothelial cells", "description": "Analysis of liver endothelial cells (LECs) from male Wistars exposed to carbon tetrachloride to induce cirrhosis. Studies suggest that LECs play a role in the decrease of hepatic vascular compliance in cirrhosis. Results identify endothelial-specific pathways for therapeutic targeting.", "type": "Expression profiling by array", "pubmed_id": "16285966", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1843", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1354", "description": "control", "sample_id": [ "GSM32440", "GSM32441", "GSM32442" ], "type": "disease state", "id": "GDS1354_1" }, { "dataset_id": "GDS1354", "description": "cirrhosis", "sample_id": [ "GSM32443", "GSM32444", "GSM32445" ], "type": "disease state", "id": "GDS1354_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1354", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1354.tab", "compression": "gz" } ], [ [ "GDS1357.tab" ], { "title": "Muscle response to low frequency electrical stimulation: time course", "description": "Expression profiling of tibialis anterior muscle after 3 hours of low frequency electrical stimulation using a pacer. Muscle tissues harvested at various time points up to 24 hours following stimulation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1345", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "13872", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log10 ratio", "reference_series": "GSE1564", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1357", "description": "control", "sample_id": [ "GSM26919" ], "type": "stress", "id": "GDS1357_1" }, { "dataset_id": "GDS1357", "description": "electrical stimulation", "sample_id": [ "GSM26920", "GSM26921", "GSM26922", "GSM26923", "GSM26924" ], "type": "stress", "id": "GDS1357_2" }, { "dataset_id": "GDS1357", "description": "0 h", "sample_id": [ "GSM26919", "GSM26920" ], "type": "time", "id": "GDS1357_3" }, { "dataset_id": "GDS1357", "description": "1 h", "sample_id": [ "GSM26921" ], "type": "time", "id": "GDS1357_4" }, { "dataset_id": "GDS1357", "description": "3 h", "sample_id": [ "GSM26922" ], "type": "time", "id": "GDS1357_5" }, { "dataset_id": "GDS1357", "description": "8 h", "sample_id": [ "GSM26923" ], "type": "time", "id": "GDS1357_6" }, { "dataset_id": "GDS1357", "description": "24 h", "sample_id": [ "GSM26924" ], "type": "time", "id": "GDS1357_7" } ], "taxid": "10090", "genes": 10444, "aggregation_function": "mean", "name": "GDS1357", "version": 1.0, "instances": "6", "variables": 10447, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1357.tab", "compression": "gz" } ], [ [ "GDS1359.tab" ], { "title": "Conjugated linoleic acid delipidative effect on obese line: time course (dye-swap)", "description": "Analysis of epididymal adipose tissue from M16 polygenic obese animals fed diet containing 1% trans-10 cis-12-conjugated linoleic acid (CLA). Body weight was 12% lower by day 14 on CLA diet. Adipose examined at 5 and 14 days. Results provide insight to mechanisms underlying CLA delipidative effect.", "type": "Expression profiling by array", "pubmed_id": "15888570", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log10 ratio", "reference_series": "GSE1580", "order": "ordered", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1359", "description": "5 d", "sample_id": [ "GSM27155", "GSM27158" ], "type": "time", "id": "GDS1359_1" }, { "dataset_id": "GDS1359", "description": "14 d", "sample_id": [ "GSM27166", "GSM27168" ], "type": "time", "id": "GDS1359_2" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS1359", "version": 1.0, "instances": "4", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1359.tab", "compression": "gz" } ], [ [ "GDS1360.tab" ], { "title": "Conjugated linoleic acid delipidative effect on obese line: time course", "description": "Analysis of epididymal adipose tissue from M16 polygenic obese animals fed diet containing 1% trans-10 cis-12-conjugated linoleic acid (CLA). Body weight was 12% lower by day 14 on CLA diet. Adipose examined at 5 and 14 days. Results provide insight to mechanisms underlying CLA delipidative effect.", "type": "Expression profiling by array", "pubmed_id": "15888570", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log10 ratio", "reference_series": "GSE1580", "order": "ordered", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1360", "description": "5 d", "sample_id": [ "GSM27145", "GSM27154" ], "type": "time", "id": "GDS1360_1" }, { "dataset_id": "GDS1360", "description": "14 d", "sample_id": [ "GSM27162", "GSM27164" ], "type": "time", "id": "GDS1360_2" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS1360", "version": 1.0, "instances": "4", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1360.tab", "compression": "gz" } ], [ [ "GDS1361.tab" ], { "title": "Testosterone effect on meibomian gland", "description": "Analysis of meibomian glands from orchiectomized BALB/c adults treated with testosterone for 14 days. Androgen deficiency associated with glandular dysfunction and evaporative dry eye. Lacrimal and submandibular glands included. Results suggest pathways regulated by androgens in meibomian glands.", "type": "Expression profiling by array", "pubmed_id": [ "16186348", "16384958", "16304452", "16488965" ], "platform": "GPL1310", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10500", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE1582", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1361", "description": "lacrimal gland", "sample_id": [ "GSM27185", "GSM27186", "GSM27187", "GSM27188", "GSM27189", "GSM27190" ], "type": "tissue", "id": "GDS1361_1" }, { "dataset_id": "GDS1361", "description": "submandibular gland", "sample_id": [ "GSM27197", "GSM27198", "GSM27199", "GSM27200", "GSM27201", "GSM27202" ], "type": "tissue", "id": "GDS1361_2" }, { "dataset_id": "GDS1361", "description": "meibomian gland", "sample_id": [ "GSM27191", "GSM27192", "GSM27193", "GSM27194", "GSM27195", "GSM27196" ], "type": "tissue", "id": "GDS1361_3" }, { "dataset_id": "GDS1361", "description": "control", "sample_id": [ "GSM27185", "GSM27186", "GSM27187", "GSM27191", "GSM27192", "GSM27193", "GSM27197", "GSM27198", "GSM27199" ], "type": "agent", "id": "GDS1361_4" }, { "dataset_id": "GDS1361", "description": "testosterone", "sample_id": [ "GSM27188", "GSM27189", "GSM27190", "GSM27194", "GSM27195", "GSM27196", "GSM27200", "GSM27201", "GSM27202" ], "type": "agent", "id": "GDS1361_5" } ], "taxid": "10090", "genes": 9940, "aggregation_function": "mean", "name": "GDS1361", "version": 1.0, "instances": "18", "variables": 9943, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1361.tab", "compression": "gz" } ], [ [ "GDS1362.tab" ], { "title": "Ischemic and nonischemic cardiomyopathy comparison", "description": "Analysis of myocardial tissues from nonischemic (NICM) and ischemic cardiomyopathy (ICM) patients. NICM and ICM, major forms of dilated cardiomyopathy leading to congestive heart failure, have similar presentations but differ in pathophysiology, prognosis, and response to therapy.", "type": "Expression profiling by array", "pubmed_id": "15769906", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "transformed count", "reference_series": "GSE1869", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1362", "description": "non-failing heart", "sample_id": [ "GSM33108", "GSM33109", "GSM33110", "GSM33111", "GSM33112", "GSM33113" ], "type": "disease state", "id": "GDS1362_1" }, { "dataset_id": "GDS1362", "description": "non-ischemic cardiomyopathy", "sample_id": [ "GSM33069", "GSM33087", "GSM33088", "GSM33089", "GSM33090", "GSM33091", "GSM33093", "GSM33095", "GSM33097", "GSM33098", "GSM33099", "GSM33100", "GSM33101", "GSM33102", "GSM33103", "GSM33104", "GSM33105", "GSM33106", "GSM33107", "GSM33115", "GSM33122" ], "type": "disease state", "id": "GDS1362_2" }, { "dataset_id": "GDS1362", "description": "ischemic cardiomyopathy", "sample_id": [ "GSM33092", "GSM33094", "GSM33096", "GSM33114", "GSM33116", "GSM33117", "GSM33118", "GSM33119", "GSM33120", "GSM33121" ], "type": "disease state", "id": "GDS1362_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1362", "version": 1.0, "instances": "37", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1362.tab", "compression": "gz" } ], [ [ "GDS1363.tab" ], { "title": "N-methyl-N-nitrosourea-induced breast cancer model", "description": "Analysis of N-methyl-N-nitrosourea (NMU)- induced primary mammary tumors from Wistar-Furth females. Results compared to expression profiles of human breast carcinomas, and found similar to profiles of ER-positive, low to intermediate grade breast cancer.", "type": "Expression profiling by array", "pubmed_id": "15845649", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE1872", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1363", "description": "normal", "sample_id": [ "GSM33158", "GSM33159", "GSM33160", "GSM33161", "GSM33162", "GSM33163", "GSM33164", "GSM33165", "GSM33166", "GSM33167", "GSM33168" ], "type": "disease state", "id": "GDS1363_1" }, { "dataset_id": "GDS1363", "description": "tumor", "sample_id": [ "GSM33169", "GSM33170", "GSM33171", "GSM33172", "GSM33173", "GSM33174", "GSM33176", "GSM33177", "GSM33178", "GSM33179", "GSM33180", "GSM33181", "GSM33183", "GSM33184", "GSM33185", "GSM33186", "GSM33187", "GSM33188", "GSM33189", "GSM33190", "GSM33191", "GSM33192", "GSM33193", "GSM33194" ], "type": "disease state", "id": "GDS1363_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1363", "version": 1.0, "instances": "35", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1363.tab", "compression": "gz" } ], [ [ "GDS1365.tab" ], { "title": "IFN-gamma primed macrophage response to IFN-gamma restimulation: time course", "description": "Analysis of CD14+ monocytes primed with 3 U/ml (subactivating dose) IFN-gamma for 48 hours and restimulated with 100 U/ml (saturating dose) IFN-gamma for various time point up to 24 hours. Results provide insight into the influence of IFN-gamma priming on IFN-gamma induced transcriptional responses.", "type": "Expression profiling by array", "pubmed_id": "16148108", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1925", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1365", "description": "unprimed", "sample_id": [ "GSM34595", "GSM34596", "GSM34597", "GSM34601", "GSM34602", "GSM34603", "GSM34607", "GSM34608", "GSM34609" ], "type": "protocol", "id": "GDS1365_1" }, { "dataset_id": "GDS1365", "description": "IFN-gamma primed", "sample_id": [ "GSM34598", "GSM34599", "GSM34600", "GSM34604", "GSM34605", "GSM34606", "GSM34610", "GSM34611", "GSM34612" ], "type": "protocol", "id": "GDS1365_2" }, { "dataset_id": "GDS1365", "description": "unstimulated", "sample_id": [ "GSM34595", "GSM34598", "GSM34601", "GSM34604", "GSM34607", "GSM34610" ], "type": "other", "id": "GDS1365_3" }, { "dataset_id": "GDS1365", "description": "IFN-gamma restimulated", "sample_id": [ "GSM34596", "GSM34597", "GSM34599", "GSM34600", "GSM34602", "GSM34603", "GSM34605", "GSM34606", "GSM34608", "GSM34609", "GSM34611", "GSM34612" ], "type": "other", "id": "GDS1365_4" }, { "dataset_id": "GDS1365", "description": "0 h", "sample_id": [ "GSM34595", "GSM34598", "GSM34601", "GSM34604", "GSM34607", "GSM34610" ], "type": "time", "id": "GDS1365_5" }, { "dataset_id": "GDS1365", "description": "3 h", "sample_id": [ "GSM34596", "GSM34599", "GSM34602", "GSM34605", "GSM34608", "GSM34611" ], "type": "time", "id": "GDS1365_6" }, { "dataset_id": "GDS1365", "description": "24 h", "sample_id": [ "GSM34597", "GSM34600", "GSM34603", "GSM34606", "GSM34609", "GSM34612" ], "type": "time", "id": "GDS1365_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1365", "version": 1.0, "instances": "18", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1365.tab", "compression": "gz" } ], [ [ "GDS1366.tab" ], { "title": "Androgen effect on spermatogenesis", "description": "Analysis of testis from Sertoli cell-selective androgen receptor knockouts (SCARKO) at postnatal day 10. Results provide insight into molecular consequences of selective absence of androgen action in Sertoli cells at onset of spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "16166195", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2260", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1366", "description": "SCARKO", "sample_id": [ "GSM41500", "GSM41502", "GSM41504", "GSM41506", "GSM41509" ], "type": "strain", "id": "GDS1366_1" }, { "dataset_id": "GDS1366", "description": "control", "sample_id": [ "GSM41498", "GSM41501", "GSM41503", "GSM41505", "GSM41510" ], "type": "strain", "id": "GDS1366_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1366", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1366.tab", "compression": "gz" } ], [ [ "GDS1367.tab" ], { "title": "Androgen effect on spermatogenesis: time course", "description": "Analysis of testis from Sertoli cell-selective androgen receptor knockouts (SCARKO) between postnatal day 8 and 20. Results provide insight into molecular consequences of selective absence of androgen action in Sertoli cells at onset of spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "16166195", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2259", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1367", "description": "control", "sample_id": [ "GSM41507", "GSM41510", "GSM41511", "GSM41513", "GSM41516" ], "type": "strain", "id": "GDS1367_1" }, { "dataset_id": "GDS1367", "description": "SCARKO", "sample_id": [ "GSM41508", "GSM41509", "GSM41512", "GSM41514", "GSM41515" ], "type": "strain", "id": "GDS1367_2" }, { "dataset_id": "GDS1367", "description": "8 d", "sample_id": [ "GSM41507", "GSM41508" ], "type": "age", "id": "GDS1367_3" }, { "dataset_id": "GDS1367", "description": "10 d", "sample_id": [ "GSM41509", "GSM41510" ], "type": "age", "id": "GDS1367_4" }, { "dataset_id": "GDS1367", "description": "12 d", "sample_id": [ "GSM41511", "GSM41512" ], "type": "age", "id": "GDS1367_5" }, { "dataset_id": "GDS1367", "description": "16 d", "sample_id": [ "GSM41513", "GSM41514" ], "type": "age", "id": "GDS1367_6" }, { "dataset_id": "GDS1367", "description": "20 d", "sample_id": [ "GSM41515", "GSM41516" ], "type": "age", "id": "GDS1367_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1367", "version": 1.0, "instances": "10", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1367.tab", "compression": "gz" } ], [ [ "GDS1369.tab" ], { "title": "Autophagy effect on the MHC class II antigenic peptide repertoire", "description": "Analysis of Awells B-lymphoblastoid cell line after 6 and 24 hours of starvation-induced autophagy. Results identify the influence of autophagy on the MHC-II ligandome, in promoting MHC-II presentation of antigens from intracellular source proteins, and on the MHC-II antigen-processing machinery.", "type": "Expression profiling by array", "pubmed_id": "15894616", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2435", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1369", "description": "starvation-induced autophagy", "sample_id": [ "GSM45796", "GSM45797", "GSM45798" ], "type": "stress", "id": "GDS1369_1" }, { "dataset_id": "GDS1369", "description": "control", "sample_id": [ "GSM45799", "GSM45800", "GSM45801" ], "type": "stress", "id": "GDS1369_2" }, { "dataset_id": "GDS1369", "description": "6 h", "sample_id": [ "GSM45796", "GSM45799" ], "type": "time", "id": "GDS1369_3" }, { "dataset_id": "GDS1369", "description": "24 h", "sample_id": [ "GSM45797", "GSM45798", "GSM45800", "GSM45801" ], "type": "time", "id": "GDS1369_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1369", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1369.tab", "compression": "gz" } ], [ [ "GDS1371.tab" ], { "title": "Peripheral myelin protein 22 gene dosage and point mutation effect on sciatic nerve", "description": "Analysis of sciatic nerve from postnatal day 4 and 60 mutants overexpressing peripheral myelin protein 22 (PMP22), lacking PMP22, or expressing the Trembler PMP22 point mutation. Results provide insight into normal function of PMP22, myelination, and neuropathies caused by PMP22 misexpression.", "type": "Expression profiling by array", "pubmed_id": "15755691", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1947", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1371", "description": "wild type", "sample_id": [ "GSM34798", "GSM34799", "GSM34800", "GSM34801", "GSM34802", "GSM34803" ], "type": "genotype/variation", "id": "GDS1371_1" }, { "dataset_id": "GDS1371", "description": "PMP22 Trembler", "sample_id": [ "GSM34810", "GSM34811", "GSM34812", "GSM34817", "GSM34818" ], "type": "genotype/variation", "id": "GDS1371_2" }, { "dataset_id": "GDS1371", "description": "PMP22 knockout", "sample_id": [ "GSM34804", "GSM34805", "GSM34806", "GSM34813", "GSM34814" ], "type": "genotype/variation", "id": "GDS1371_3" }, { "dataset_id": "GDS1371", "description": "PMP22 overexpressor", "sample_id": [ "GSM34807", "GSM34808", "GSM34809", "GSM34815", "GSM34816" ], "type": "genotype/variation", "id": "GDS1371_4" }, { "dataset_id": "GDS1371", "description": "4 d", "sample_id": [ "GSM34798", "GSM34799", "GSM34800", "GSM34804", "GSM34805", "GSM34806", "GSM34807", "GSM34808", "GSM34809", "GSM34810", "GSM34811", "GSM34812" ], "type": "age", "id": "GDS1371_5" }, { "dataset_id": "GDS1371", "description": "60 d", "sample_id": [ "GSM34801", "GSM34802", "GSM34803", "GSM34813", "GSM34814", "GSM34815", "GSM34816", "GSM34817", "GSM34818" ], "type": "age", "id": "GDS1371_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1371", "version": 1.0, "instances": "21", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1371.tab", "compression": "gz" } ], [ [ "GDS1372.tab" ], { "title": "Bone morphogenic protein 2 effect on idiopathic pulmonary arterial hypertension", "description": "Analysis of pulmonary artery smooth muscle cells (PASMC) from patients with idiopathic pulmonary arterial hypertension (IPAH). PASMC treated with 200 nM bone morphogenic protein 2 (BMP-2) for 24 hours. BMP signaling dysfunction has been implicated in IPAH.", "type": "Expression profiling by array", "pubmed_id": "16368652", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2559", "order": "none", "update_date": "Dec 27 2005", "subsets": [ { "dataset_id": "GDS1372", "description": "normotensive", "sample_id": [ "GSM48944", "GSM48945", "GSM48946" ], "type": "disease state", "id": "GDS1372_1" }, { "dataset_id": "GDS1372", "description": "idiopathic pulmonary arterial hypertension", "sample_id": [ "GSM48947", "GSM48948", "GSM48949", "GSM48950" ], "type": "disease state", "id": "GDS1372_2" }, { "dataset_id": "GDS1372", "description": "untreated", "sample_id": [ "GSM48944", "GSM48947", "GSM48949" ], "type": "agent", "id": "GDS1372_3" }, { "dataset_id": "GDS1372", "description": "BMP-2", "sample_id": [ "GSM48945", "GSM48946", "GSM48948", "GSM48950" ], "type": "agent", "id": "GDS1372_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1372", "version": 1.0, "instances": "7", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1372.tab", "compression": "gz" } ], [ [ "GDS1373.tab" ], { "title": "Peroxisome proliferator-activated receptor subtype activation effect on liver cell", "description": "Analysis of HepG2 cells expressing peroxisome proliferator-activated receptor (PPAR) alpha, beta/delta, gamma 1, or gamma 2. Cells expressing PPARs treated with fenofibric acid, GW501516, or ciglitizone to activate alpha, beta/delta, or gamma subtypes respectively. PPARs regulate lipid homeostasis.", "type": "Expression profiling by array", "pubmed_id": "16197558", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2699", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1373", "description": "PPAR alpha", "sample_id": [ "GSM52168", "GSM52169", "GSM52170" ], "type": "cell line", "id": "GDS1373_1" }, { "dataset_id": "GDS1373", "description": "PPAR beta delta", "sample_id": [ "GSM52171", "GSM52172", "GSM52173" ], "type": "cell line", "id": "GDS1373_2" }, { "dataset_id": "GDS1373", "description": "PPAR gamma 1", "sample_id": [ "GSM52174", "GSM52175", "GSM52176" ], "type": "cell line", "id": "GDS1373_3" }, { "dataset_id": "GDS1373", "description": "PPAR gamma 2", "sample_id": [ "GSM52177", "GSM52178", "GSM52179" ], "type": "cell line", "id": "GDS1373_4" }, { "dataset_id": "GDS1373", "description": "control", "sample_id": [ "GSM52168", "GSM52169", "GSM52171", "GSM52172", "GSM52175", "GSM52176", "GSM52178", "GSM52179" ], "type": "agent", "id": "GDS1373_5" }, { "dataset_id": "GDS1373", "description": "fenofibric acid", "sample_id": [ "GSM52170" ], "type": "agent", "id": "GDS1373_6" }, { "dataset_id": "GDS1373", "description": "GW501516", "sample_id": [ "GSM52173" ], "type": "agent", "id": "GDS1373_7" }, { "dataset_id": "GDS1373", "description": "ciglitizone", "sample_id": [ "GSM52174", "GSM52177" ], "type": "agent", "id": "GDS1373_8" }, { "dataset_id": "GDS1373", "description": "control", "sample_id": [ "GSM52168", "GSM52171", "GSM52175", "GSM52178" ], "type": "protocol", "id": "GDS1373_9" }, { "dataset_id": "GDS1373", "description": "expressed", "sample_id": [ "GSM52169", "GSM52172", "GSM52176", "GSM52179" ], "type": "protocol", "id": "GDS1373_10" }, { "dataset_id": "GDS1373", "description": "activated", "sample_id": [ "GSM52170", "GSM52173", "GSM52174", "GSM52177" ], "type": "protocol", "id": "GDS1373_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1373", "version": 1.0, "instances": "12", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1373.tab", "compression": "gz" } ], [ [ "GDS1374.tab" ], { "title": "Stearoyl-CoA desaturase 1 null mutation effect on liver", "description": "Analysis of liver of 6 week old stearoyl-CoA desaturase 1 (SCD1) knockout females. SCD1 is a lipogenic enzyme that catalyzes the synthesis of monosaturated fatty acids. SCD1 null mutants have reduced body adiposity, increased insulin sensitivity, and are resistant to diet-induced weight gain.", "type": "Expression profiling by array", "pubmed_id": "12177411", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2926", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1374", "description": "wild type", "sample_id": [ "GSM63856", "GSM63857", "GSM63858", "GSM63859", "GSM63860" ], "type": "genotype/variation", "id": "GDS1374_1" }, { "dataset_id": "GDS1374", "description": "SCD1 null", "sample_id": [ "GSM63851", "GSM63852", "GSM63853", "GSM63854", "GSM63855" ], "type": "genotype/variation", "id": "GDS1374_2" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS1374", "version": 1.0, "instances": "10", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1374.tab", "compression": "gz" } ], [ [ "GDS1375.tab" ], { "title": "Cutaneous malignant melanoma", "description": "Expression profiling of primary malignant melanoma, benign skin nevi, and normal skin samples. Results identify potential molecular markers for lymph node staging assays, and provide insight into melanoma tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "16243793", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "70", "value_type": "count", "reference_series": "GSE3189", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1375", "description": "normal", "sample_id": [ "GSM71671", "GSM71672", "GSM71673", "GSM71674", "GSM71675", "GSM71676", "GSM71677" ], "type": "disease state", "id": "GDS1375_1" }, { "dataset_id": "GDS1375", "description": "benign nevi", "sample_id": [ "GSM71678", "GSM71679", "GSM71680", "GSM71681", "GSM71682", "GSM71683", "GSM71684", "GSM71685", "GSM71686", "GSM71687", "GSM71688", "GSM71689", "GSM71690", "GSM71691", "GSM71692", "GSM71693", "GSM71694", "GSM71695" ], "type": "disease state", "id": "GDS1375_2" }, { "dataset_id": "GDS1375", "description": "malignant melanoma", "sample_id": [ "GSM71696", "GSM71697", "GSM71698", "GSM71699", "GSM71700", "GSM71734", "GSM71702", "GSM71703", "GSM71704", "GSM71705", "GSM71706", "GSM71707", "GSM71708", "GSM71709", "GSM71710", "GSM71711", "GSM71712", "GSM71713", "GSM71714", "GSM71715", "GSM71716", "GSM71717", "GSM71718", "GSM71719", "GSM71720", "GSM71721", "GSM71722", "GSM71723", "GSM71724", "GSM71725", "GSM71726", "GSM71727", "GSM71728", "GSM71729", "GSM71730", "GSM71731", "GSM71732", "GSM71733", "GSM71735", "GSM71736", "GSM71737", "GSM71738", "GSM71739", "GSM71740", "GSM71701" ], "type": "disease state", "id": "GDS1375_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1375", "version": 1.0, "instances": "70", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1375.tab", "compression": "gz" } ], [ [ "GDS1376.tab" ], { "title": "Essential thrombocythemia", "description": "Analysis of platelets from patients with essential thrombocythemia (ET). ET is a myeloproliferative disorder resulting in an abnormal increase in the number of blood platelets. Results indicate that distinct expression patterns of 17beta-hydroxysteroid dehydrogenases are associated with ET.", "type": "Expression profiling by array", "pubmed_id": "16113833", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2006", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1376", "description": "white blood cell", "sample_id": [ "GSM35710", "GSM35711", "GSM35712" ], "type": "cell type", "id": "GDS1376_1" }, { "dataset_id": "GDS1376", "description": "platelet", "sample_id": [ "GSM35699", "GSM35700", "GSM35701", "GSM35702", "GSM35703", "GSM35704", "GSM35705", "GSM35706", "GSM35707", "GSM35708", "GSM35709" ], "type": "cell type", "id": "GDS1376_2" }, { "dataset_id": "GDS1376", "description": "normal", "sample_id": [ "GSM35710", "GSM35711", "GSM35712", "GSM35705", "GSM35706", "GSM35707", "GSM35708", "GSM35709" ], "type": "disease state", "id": "GDS1376_3" }, { "dataset_id": "GDS1376", "description": "thrombocythemia", "sample_id": [ "GSM35699", "GSM35700", "GSM35701", "GSM35702", "GSM35703", "GSM35704" ], "type": "disease state", "id": "GDS1376_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1376", "version": 1.0, "instances": "14", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1376.tab", "compression": "gz" } ], [ [ "GDS1379.tab" ], { "title": "Hypoxia response", "description": "Analysis of wild type, hif-1-deficient, and vhl-1-deficient strains cultured for 4 hours in 21% oxygen (normoxia) or 0.1% oxygen (hypoxia). Results provide insight into pathways for adaptation to oxygen deprivation.", "type": "Expression profiling by array", "pubmed_id": "15781453", "platform": "GPL2569", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "21888", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log2 ratio", "reference_series": "GSE2836", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1379", "description": "wild type", "sample_id": [ "GSM62231", "GSM62236", "GSM62237" ], "type": "strain", "id": "GDS1379_1" }, { "dataset_id": "GDS1379", "description": "vhl-1", "sample_id": [ "GSM62232", "GSM62233", "GSM62235" ], "type": "strain", "id": "GDS1379_2" }, { "dataset_id": "GDS1379", "description": "hif-1", "sample_id": [ "GSM62234", "GSM62238", "GSM62239" ], "type": "strain", "id": "GDS1379_3" } ], "taxid": "6239", "genes": 19613, "aggregation_function": "mean", "name": "GDS1379", "version": 1.0, "instances": "9", "variables": 19615, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1379.tab", "compression": "gz" } ], [ [ "GDS1380.tab" ], { "title": "Glioblastoma pseudopalisading cells", "description": "Analysis of pseudopalisading cells obtained by laser capture microdissection from glioblastoma tumors. The presence of pseudopalisading cells is associated with aggressive malignant gliomas. Results identify putative prognostic markers for glioblastoma.", "type": "Expression profiling by array", "pubmed_id": "16254489", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE2485", "order": "none", "update_date": "May 08 2008", "subsets": [ { "dataset_id": "GDS1380", "description": "pseudopalisading cell", "sample_id": [ "GSM46566", "GSM47184", "GSM47194", "GSM47199", "GSM47202", "GSM47203", "GSM47204", "GSM47205" ], "type": "cell type", "id": "GDS1380_1" }, { "dataset_id": "GDS1380", "description": "common tumor cell", "sample_id": [ "GSM47207", "GSM47208", "GSM47209", "GSM47210", "GSM47211", "GSM47212", "GSM47213", "GSM47214", "GSM47215" ], "type": "cell type", "id": "GDS1380_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1380", "version": 1.0, "instances": "17", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1380.tab", "compression": "gz" } ], [ [ "GDS1381.tab" ], { "title": "Carboplatin sensitive and resistant ovarian carcinoma", "description": "Comparison of carboplatin sensitive and resistant ovarian cancer cells. Carboplatin is a chemotherapy drug. Cancer cells prepared from primary cultures of ovarian papillary serous adenocarcinomas. Results identify potential markers for carboplatin responsiveness in ovarian carcinoma.", "type": "Expression profiling by array", "pubmed_id": "16227411", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1926", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1381", "description": "carboplatin sensitive tumor", "sample_id": [ "GSM34615", "GSM34616", "GSM34617", "GSM34618", "GSM34619", "GSM34620", "GSM34621", "GSM34622", "GSM34623" ], "type": "disease state", "id": "GDS1381_1" }, { "dataset_id": "GDS1381", "description": "carboplatin resistant tumor", "sample_id": [ "GSM34624", "GSM34625", "GSM34626", "GSM34627", "GSM34628", "GSM34629", "GSM34630", "GSM34631", "GSM34632" ], "type": "disease state", "id": "GDS1381_2" }, { "dataset_id": "GDS1381", "description": "patient 1", "sample_id": [ "GSM34615", "GSM34616", "GSM34617" ], "type": "individual", "id": "GDS1381_3" }, { "dataset_id": "GDS1381", "description": "patient 2", "sample_id": [ "GSM34618", "GSM34619", "GSM34620" ], "type": "individual", "id": "GDS1381_4" }, { "dataset_id": "GDS1381", "description": "patient 3", "sample_id": [ "GSM34621", "GSM34622", "GSM34623" ], "type": "individual", "id": "GDS1381_5" }, { "dataset_id": "GDS1381", "description": "patient 4", "sample_id": [ "GSM34624", "GSM34625", "GSM34626" ], "type": "individual", "id": "GDS1381_6" }, { "dataset_id": "GDS1381", "description": "patient 5", "sample_id": [ "GSM34627", "GSM34628", "GSM34629" ], "type": "individual", "id": "GDS1381_7" }, { "dataset_id": "GDS1381", "description": "patient 6", "sample_id": [ "GSM34630", "GSM34631", "GSM34632" ], "type": "individual", "id": "GDS1381_8" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1381", "version": 1.0, "instances": "18", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1381.tab", "compression": "gz" } ], [ [ "GDS1382.tab" ], { "title": "mRNA translation and dehydration stress", "description": "Evaluation of proportion of individual mRNAs in polysomal complexes in leaves under control and mild dehydration stress (DS) conditions. DS reduces level of mRNA in polysomes (ribosome loading) for most genes. Results suggest transcript sequence features that regulate differential mRNA translation.", "type": "Expression profiling by array", "pubmed_id": "15716313", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2268", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1382", "description": "non-polysomal", "sample_id": [ "GSM38668", "GSM38670" ], "type": "protocol", "id": "GDS1382_1" }, { "dataset_id": "GDS1382", "description": "polysomal", "sample_id": [ "GSM38669", "GSM38671" ], "type": "protocol", "id": "GDS1382_2" }, { "dataset_id": "GDS1382", "description": "control", "sample_id": [ "GSM38668", "GSM38669" ], "type": "stress", "id": "GDS1382_3" }, { "dataset_id": "GDS1382", "description": "dehydration", "sample_id": [ "GSM38670", "GSM38671" ], "type": "stress", "id": "GDS1382_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1382", "version": 1.0, "instances": "4", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1382.tab", "compression": "gz" } ], [ [ "GDS1384.tab" ], { "title": "c-Myb and its oncogenic variant v-Myb", "description": "Analysis of transcriptional activity in MCF7 cells infected with control adenovirus versus adenovirus expressing c-Myb, oncogenic variant v-Myb, or a 3MutC hybrid construct. Results indicate that v-Myb is a distinct transcriptional regulator with a unique set of activities.", "type": "Expression profiling by array", "pubmed_id": "16205643", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2815", "order": "none", "update_date": "Dec 29 2005", "subsets": [ { "dataset_id": "GDS1384", "description": "control", "sample_id": [ "GSM60915", "GSM60916" ], "type": "agent", "id": "GDS1384_1" }, { "dataset_id": "GDS1384", "description": "c-Myb", "sample_id": [ "GSM60917", "GSM60918" ], "type": "agent", "id": "GDS1384_2" }, { "dataset_id": "GDS1384", "description": "v-Myb", "sample_id": [ "GSM60921", "GSM60922" ], "type": "agent", "id": "GDS1384_3" }, { "dataset_id": "GDS1384", "description": "3MutC", "sample_id": [ "GSM60919", "GSM60920" ], "type": "agent", "id": "GDS1384_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1384", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1384.tab", "compression": "gz" } ], [ [ "GDS1385.tab" ], { "title": "Hepatocellular carcinoma induced by choline-deficient L-amino acid-defined diet", "description": "Analysis of hepatocellular carcinoma (HCC) tumors, surrounding non-cancerous tissue, and normal liver from Fischer 344 males. HCC formation induced by a choline-deficient L-amino acid-defined (CDAA) diet for 70 weeks. Results provide insight into molecular mechanisms underlying progression of HCC.", "type": "Expression profiling by array", "pubmed_id": "16053513", "platform": "GPL1331", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "3757", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE1946", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1385", "description": "control diet", "sample_id": [ "GSM35168", "GSM35169", "GSM35170", "GSM35171", "GSM35172" ], "type": "protocol", "id": "GDS1385_1" }, { "dataset_id": "GDS1385", "description": "choline-deficient L-amino acid defined diet", "sample_id": [ "GSM35173", "GSM35174", "GSM35175", "GSM35176", "GSM35177", "GSM35178", "GSM35179", "GSM35180", "GSM35181", "GSM35182" ], "type": "protocol", "id": "GDS1385_2" }, { "dataset_id": "GDS1385", "description": "normal liver", "sample_id": [ "GSM35168", "GSM35169", "GSM35170", "GSM35171", "GSM35172" ], "type": "tissue", "id": "GDS1385_3" }, { "dataset_id": "GDS1385", "description": "noncancerous liver", "sample_id": [ "GSM35173", "GSM35174", "GSM35175", "GSM35176", "GSM35177" ], "type": "tissue", "id": "GDS1385_4" }, { "dataset_id": "GDS1385", "description": "hepatocellular carcinoma", "sample_id": [ "GSM35178", "GSM35179", "GSM35180", "GSM35181", "GSM35182" ], "type": "tissue", "id": "GDS1385_5" } ], "taxid": "10116", "genes": 3716, "aggregation_function": "mean", "name": "GDS1385", "version": 1.0, "instances": "15", "variables": 3719, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1385.tab", "compression": "gz" } ], [ [ "GDS1388.tab" ], { "title": "B-cell chronic lymphocytic leukemia progression", "description": "Analysis of primary lymphocytes from B-cell chronic lymphocytic leukemia (B-CLL) patients. Lymphocytes from patients with indolent B-CLL compared to those with progressive B-CLL. Results identify putative gene markers of B-CLL progression from a stable to an aggressive state.", "type": "Expression profiling by array", "pubmed_id": "16038780", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE2403", "order": "none", "update_date": "Dec 28 2005", "subsets": [ { "dataset_id": "GDS1388", "description": "indolent B-CLL", "sample_id": [ "GSM45021", "GSM45022", "GSM45023", "GSM45024", "GSM45025", "GSM45066", "GSM45067", "GSM45068", "GSM45069", "GSM45070", "GSM45071" ], "type": "disease state", "id": "GDS1388_1" }, { "dataset_id": "GDS1388", "description": "progressive B-CLL", "sample_id": [ "GSM45072", "GSM45073", "GSM45074", "GSM45075", "GSM45076", "GSM45077", "GSM45078", "GSM45079", "GSM45080", "GSM45081" ], "type": "disease state", "id": "GDS1388_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1388", "version": 1.0, "instances": "21", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1388.tab", "compression": "gz" } ], [ [ "GDS1389.tab" ], { "title": "1alpha,25-dihydroxyvitamin D3 suppressive effect on IFN-gamma activated macrophages", "description": "Analysis of wild type and vitamin D receptor (Vdr) knockout primary bone marrow-derived macrophages following treatment with IFN-gamma and/or 1alpha,25-dihydroxyvitamin D3 (1alpha,25(OH)2D3). Results indicate that 1alpha,25(OH)2D3 suppresses effector functions of IFN-gamma-activated macrophages.", "type": "Expression profiling by array", "pubmed_id": "16118315", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2421", "order": "none", "update_date": "Dec 29 2005", "subsets": [ { "dataset_id": "GDS1389", "description": "untreated", "sample_id": [ "GSM45581", "GSM45580" ], "type": "agent", "id": "GDS1389_1" }, { "dataset_id": "GDS1389", "description": "IFN-gamma", "sample_id": [ "GSM45584", "GSM45585" ], "type": "agent", "id": "GDS1389_2" }, { "dataset_id": "GDS1389", "description": "1alpha,25(OH)2D3", "sample_id": [ "GSM45582", "GSM45583" ], "type": "agent", "id": "GDS1389_3" }, { "dataset_id": "GDS1389", "description": "IFN-gamma, 1alpha,25(OH)2D3", "sample_id": [ "GSM45586", "GSM45587" ], "type": "agent", "id": "GDS1389_4" }, { "dataset_id": "GDS1389", "description": "wild type", "sample_id": [ "GSM45581", "GSM45582", "GSM45584", "GSM45586" ], "type": "genotype/variation", "id": "GDS1389_5" }, { "dataset_id": "GDS1389", "description": "Vdr knockout", "sample_id": [ "GSM45580", "GSM45583", "GSM45585", "GSM45587" ], "type": "genotype/variation", "id": "GDS1389_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1389", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1389.tab", "compression": "gz" } ], [ [ "GDS1390.tab" ], { "title": "Prostate cancer progression after androgen ablation", "description": "Analysis of prostate cancer progression following androgen ablation treatment. 10 treated androgen-independent primary prostate tumors compared to 10 untreated androgen-dependent primary prostate tumors. Results provide insight into progression of prostate cancer to aggressive androgen-independent", "type": "Expression profiling by array", "pubmed_id": "16203770", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2443", "order": "none", "update_date": "Dec 29 2005", "subsets": [ { "dataset_id": "GDS1390", "description": "androgen-dependent prostate cancer", "sample_id": [ "GSM45730", "GSM45847", "GSM45848", "GSM45849", "GSM45850", "GSM45851", "GSM45852", "GSM45853", "GSM45854", "GSM45855" ], "type": "disease state", "id": "GDS1390_1" }, { "dataset_id": "GDS1390", "description": "androgen-independent prostate cancer", "sample_id": [ "GSM45856", "GSM45857", "GSM45858", "GSM45859", "GSM45860", "GSM45861", "GSM45862", "GSM45863", "GSM45864", "GSM45865" ], "type": "disease state", "id": "GDS1390_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1390", "version": 1.0, "instances": "20", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1390.tab", "compression": "gz" } ], [ [ "GDS1392.tab" ], { "title": "Myelodysplastic syndrome", "description": "Analysis of bone marrow CD34+ progenitor cells from normal-karyotype, low-blast-count, early, low-risk myelodysplastic syndrome (MDS) patients, age-matched controls, and patients with non-MDS anemia. Results provide insight into pathogenesis of MDS and identify putative markers of MDS.", "type": "Expression profiling by array", "pubmed_id": "16076868", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE2779", "order": "none", "update_date": "Dec 30 2005", "subsets": [ { "dataset_id": "GDS1392", "description": "normal", "sample_id": [ "GSM60396", "GSM60399", "GSM60402", "GSM60403", "GSM60419", "GSM60422", "GSM60423", "GSM60424", "GSM60425" ], "type": "disease state", "id": "GDS1392_1" }, { "dataset_id": "GDS1392", "description": "folate deficiency", "sample_id": [ "GSM60452" ], "type": "disease state", "id": "GDS1392_2" }, { "dataset_id": "GDS1392", "description": "vitamin B12 deficiency", "sample_id": [ "GSM60453" ], "type": "disease state", "id": "GDS1392_3" }, { "dataset_id": "GDS1392", "description": "rheumatoid arthritis, off treatment", "sample_id": [ "GSM60454" ], "type": "disease state", "id": "GDS1392_4" }, { "dataset_id": "GDS1392", "description": "rheumatoid arthritis, on methotrexate", "sample_id": [ "GSM60455", "GSM60456" ], "type": "disease state", "id": "GDS1392_5" }, { "dataset_id": "GDS1392", "description": "myelodysplastic syndrome", "sample_id": [ "GSM60426", "GSM60427", "GSM60428", "GSM60429", "GSM60430", "GSM60431", "GSM60432", "GSM60439", "GSM60441", "GSM60443", "GSM60445", "GSM60446", "GSM60447", "GSM60449" ], "type": "disease state", "id": "GDS1392_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1392", "version": 1.0, "instances": "28", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1392.tab", "compression": "gz" } ], [ [ "GDS1393.tab" ], { "title": "Type 1 diabetes mellitus model of erectile dysfunction", "description": "Analysis of F344 penile cavernosal tissue after 10 weeks of streptozotocin (STZ)-induced Type 1 diabetes. Results provide insight into molecular events associated with pathophysiology of diabetes-induced erectile dysfunction (ED).", "type": "Expression profiling by array", "pubmed_id": "16118269", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2457", "order": "none", "update_date": "Dec 30 2005", "subsets": [ { "dataset_id": "GDS1393", "description": "control", "sample_id": [ "GSM46500", "GSM46503", "GSM46508", "GSM46512", "GSM46516" ], "type": "disease state", "id": "GDS1393_1" }, { "dataset_id": "GDS1393", "description": "diabetes-induced erectile dysfunction", "sample_id": [ "GSM46518", "GSM46519", "GSM46520", "GSM46521", "GSM46522" ], "type": "disease state", "id": "GDS1393_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1393", "version": 1.0, "instances": "10", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1393.tab", "compression": "gz" } ], [ [ "GDS1394.tab" ], { "title": "D-penicillamine-induced autoimmunity model of idiosyncratic drug reactions", "description": "Analysis of Brown Norway males 6 hours after treatment with 150 mg/kg of D-penicillamine. Some rheumatoid arthritis patients treated with D-penicillamine develop idiosyncratic drug reactions (IDR). Results provide insight into mechanisms underlying IDR.", "type": "Expression profiling by array", "pubmed_id": "16097792", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE2825", "order": "none", "update_date": "Dec 30 2005", "subsets": [ { "dataset_id": "GDS1394", "description": "control", "sample_id": [ "GSM61807", "GSM61808", "GSM61809", "GSM61810" ], "type": "agent", "id": "GDS1394_1" }, { "dataset_id": "GDS1394", "description": "D-penicillamine", "sample_id": [ "GSM61811", "GSM61812", "GSM61813", "GSM61814", "GSM61815", "GSM61816", "GSM61817", "GSM61818" ], "type": "agent", "id": "GDS1394_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1394", "version": 1.0, "instances": "12", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1394.tab", "compression": "gz" } ], [ [ "GDS1395.tab" ], { "title": "Viral infection: time course", "description": "Expression profiling of Oregon R males 24 and 48 hours after drosophila C virus infection. Results provide insight into the response of the innate immune system to viral infections.", "type": "Expression profiling by array", "pubmed_id": "16086017", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE2828", "order": "none", "update_date": "Dec 30 2005", "subsets": [ { "dataset_id": "GDS1395", "description": "control", "sample_id": [ "GSM61886", "GSM61888", "GSM61889", "GSM61890", "GSM61891", "GSM61892" ], "type": "infection", "id": "GDS1395_1" }, { "dataset_id": "GDS1395", "description": "virus", "sample_id": [ "GSM61893", "GSM61896", "GSM61897", "GSM61898", "GSM61899", "GSM61900" ], "type": "infection", "id": "GDS1395_2" }, { "dataset_id": "GDS1395", "description": "24 h", "sample_id": [ "GSM61886", "GSM61889", "GSM61891", "GSM61893", "GSM61897", "GSM61899" ], "type": "time", "id": "GDS1395_3" }, { "dataset_id": "GDS1395", "description": "48 h", "sample_id": [ "GSM61888", "GSM61890", "GSM61892", "GSM61896", "GSM61898", "GSM61900" ], "type": "time", "id": "GDS1395_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1395", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1395.tab", "compression": "gz" } ], [ [ "GDS1396.tab" ], { "title": "Multipotent neural progenitor cells", "description": "Analysis of multipotent neural progenitor cells (NPCs) propagated by growth on media containing cystatin C and fibroblast growth factor-2. NPCs isolated from hippocampus neural stem cells. Results provide insight into the frequency of L1 element retrotransposition events in multipotent NPCs.", "type": "Expression profiling by array", "pubmed_id": "15959507", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2499", "order": "none", "update_date": "Aug 23 2006", "subsets": [ { "dataset_id": "GDS1396", "description": "bulk progenitors", "sample_id": [ "GSM47541", "GSM47542", "GSM47543", "GSM47544", "GSM47545", "GSM47546" ], "type": "cell type", "id": "GDS1396_1" }, { "dataset_id": "GDS1396", "description": "multipotent NPCs", "sample_id": [ "GSM47547", "GSM47548", "GSM47549", "GSM47550" ], "type": "cell type", "id": "GDS1396_2" }, { "dataset_id": "GDS1396", "description": "astrocytes derived from NPCs", "sample_id": [ "GSM47551", "GSM47552", "GSM47553", "GSM47554", "GSM47555", "GSM47556" ], "type": "cell type", "id": "GDS1396_3" }, { "dataset_id": "GDS1396", "description": "neurons derived from NPCs", "sample_id": [ "GSM47557", "GSM47558", "GSM47559", "GSM47560" ], "type": "cell type", "id": "GDS1396_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1396", "version": 1.0, "instances": "20", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1396.tab", "compression": "gz" } ], [ [ "GDS1397.tab" ], { "title": "T cells infected with an HIV-based vector", "description": "Analysis of Jurkat T cells infected with an HIV-based vector transducing green fluorescent protein. Expression of genes hosting HIV integration events examined. Results provide insight into how expression from the HIV type 1 promoter is affected by the integration site of the provirus.", "type": "Expression profiling by array", "pubmed_id": "15890899", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2504", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1397", "description": "untreated", "sample_id": [ "GSM47627", "GSM47628", "GSM47629" ], "type": "agent", "id": "GDS1397_1" }, { "dataset_id": "GDS1397", "description": "HIV", "sample_id": [ "GSM47630", "GSM47631", "GSM47632" ], "type": "agent", "id": "GDS1397_2" }, { "dataset_id": "GDS1397", "description": "TNF-alpha", "sample_id": [ "GSM47633", "GSM47634", "GSM47635" ], "type": "agent", "id": "GDS1397_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1397", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1397.tab", "compression": "gz" } ], [ [ "GDS1398.tab" ], { "title": "Coritical neuron response to inhalational anesthetics", "description": "Expression profiling of primary cortical neuron cultures exposed to 1 or 3% halothane or 4% isoflurane for 6 hours. Cells allowed to recover for an additional 6 hours. Results provide insight into effect of inhaled anesthetics on global gene expression.", "type": "Expression profiling by array", "pubmed_id": "16495776", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE2982", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1398", "description": "control", "sample_id": [ "GSM61779", "GSM61796", "GSM61797" ], "type": "agent", "id": "GDS1398_1" }, { "dataset_id": "GDS1398", "description": "halothane", "sample_id": [ "GSM61798", "GSM61799", "GSM61800", "GSM61801", "GSM61802", "GSM61803" ], "type": "agent", "id": "GDS1398_2" }, { "dataset_id": "GDS1398", "description": "isoflurane", "sample_id": [ "GSM61804", "GSM61805", "GSM61806" ], "type": "agent", "id": "GDS1398_3" }, { "dataset_id": "GDS1398", "description": "control", "sample_id": [ "GSM61779", "GSM61796", "GSM61797" ], "type": "dose", "id": "GDS1398_4" }, { "dataset_id": "GDS1398", "description": "1 percent", "sample_id": [ "GSM61798", "GSM61799", "GSM61800" ], "type": "dose", "id": "GDS1398_5" }, { "dataset_id": "GDS1398", "description": "3 percent", "sample_id": [ "GSM61801", "GSM61802", "GSM61803" ], "type": "dose", "id": "GDS1398_6" }, { "dataset_id": "GDS1398", "description": "4 percent", "sample_id": [ "GSM61804", "GSM61805", "GSM61806" ], "type": "dose", "id": "GDS1398_7" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS1398", "version": 1.0, "instances": "12", "variables": 17253, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1398.tab", "compression": "gz" } ], [ [ "GDS1399.tab" ], { "title": "DNA adenine methyltransferase and mismatch repair mutants", "description": "Analysis of mutants lacking DNA adenine methyltransferase Dam, or mismatch repair protein MutS, or both. Results help elucidate the global changes resulting from Dam deficiency and the role of mismatch repair in producing these changes.", "type": "Expression profiling by array", "pubmed_id": "16199573", "platform": "GPL73", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7312", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE2928", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1399", "description": "wild type", "sample_id": [ "GSM63885", "GSM63886", "GSM63887" ], "type": "genotype/variation", "id": "GDS1399_1" }, { "dataset_id": "GDS1399", "description": "dam mutant", "sample_id": [ "GSM63888", "GSM63889", "GSM63890" ], "type": "genotype/variation", "id": "GDS1399_2" }, { "dataset_id": "GDS1399", "description": "mutS mutant", "sample_id": [ "GSM63894", "GSM63895", "GSM63896" ], "type": "genotype/variation", "id": "GDS1399_3" }, { "dataset_id": "GDS1399", "description": "dam mutS double mutant", "sample_id": [ "GSM63891", "GSM63892", "GSM63893" ], "type": "genotype/variation", "id": "GDS1399_4" } ], "taxid": "562", "genes": 7201, "aggregation_function": "mean", "name": "GDS1399", "version": 1.0, "instances": "12", "variables": 7203, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1399.tab", "compression": "gz" } ], [ [ "GDS1400.tab" ], { "title": "Cisplatin effect on DNA adenine methyltransferase and mismatch repair mutants", "description": "Analysis of mutants lacking DNA adenine methyltransferase Dam, or mismatch repair protein MutS, or both after treatment with cisplatin. dam mutants are hypersensitive to cisplatin, while dam mutS double mutants display wild type resistance to cisplatin.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL73", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7312", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE2999", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1400", "description": "mock", "sample_id": [ "GSM65588", "GSM65589", "GSM65590", "GSM65591", "GSM65593", "GSM65594", "GSM65596", "GSM65597", "GSM65598", "GSM65600", "GSM65601", "GSM65622" ], "type": "agent", "id": "GDS1400_1" }, { "dataset_id": "GDS1400", "description": "cisplatin", "sample_id": [ "GSM65623", "GSM65624", "GSM65626", "GSM65628", "GSM65629", "GSM65630", "GSM65632", "GSM65634", "GSM65636", "GSM65638", "GSM65639", "GSM65641" ], "type": "agent", "id": "GDS1400_2" }, { "dataset_id": "GDS1400", "description": "wild type", "sample_id": [ "GSM65600", "GSM65601", "GSM65622", "GSM65638", "GSM65639", "GSM65641" ], "type": "genotype/variation", "id": "GDS1400_3" }, { "dataset_id": "GDS1400", "description": "dam mutant", "sample_id": [ "GSM65588", "GSM65589", "GSM65590", "GSM65628", "GSM65629", "GSM65630" ], "type": "genotype/variation", "id": "GDS1400_4" }, { "dataset_id": "GDS1400", "description": "mutS mutant", "sample_id": [ "GSM65596", "GSM65597", "GSM65598", "GSM65632", "GSM65634", "GSM65636" ], "type": "genotype/variation", "id": "GDS1400_5" }, { "dataset_id": "GDS1400", "description": "dam mutS double mutant", "sample_id": [ "GSM65591", "GSM65593", "GSM65594", "GSM65623", "GSM65624", "GSM65626" ], "type": "genotype/variation", "id": "GDS1400_6" } ], "taxid": "562", "genes": 7201, "aggregation_function": "mean", "name": "GDS1400", "version": 1.0, "instances": "24", "variables": 7204, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1400.tab", "compression": "gz" } ], [ [ "GDS1401.tab" ], { "title": "CD34+ hematopoietic cells expanded in artificial matrix of fibrillar collagen I", "description": "Analysis of CD34+ hematopoietic stem/progenitor cells (HSC) expanded for 7 days in an artificial matrix of fibrillar collagen I, the major matrix component of bone. Results provide insight into the limitations of ex vivo expansion to increase the number of transplantable HSCs from cord blood.", "type": "Expression profiling by array", "pubmed_id": "16166251", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3003", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1401", "description": "control", "sample_id": [ "GSM65671", "GSM65717", "GSM65720" ], "type": "growth protocol", "id": "GDS1401_1" }, { "dataset_id": "GDS1401", "description": "collagen I matrix", "sample_id": [ "GSM65672", "GSM65719", "GSM65721" ], "type": "growth protocol", "id": "GDS1401_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1401", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1401.tab", "compression": "gz" } ], [ [ "GDS1402.tab" ], { "title": "Various normal pure cell cultures", "description": "Expression profiling of various pure normal epithelial, endothelial, fibroblast, stromal, and muscle cell cultures. Data provide baseline for understanding cellular mechanisms for maintenance of stable cell types and for studying pathways to terminally differentiated state.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1449", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19881", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "61", "value_type": "count", "reference_series": "GSE3239", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1402", "description": "endothelial", "sample_id": [ "GSM72644", "GSM72647", "GSM72657", "GSM72658", "GSM72659", "GSM72660", "GSM72683", "GSM72684", "GSM72686", "GSM72687", "GSM72688", "GSM72689", "GSM72690", "GSM72691", "GSM72692", "GSM72693" ], "type": "cell type", "id": "GDS1402_1" }, { "dataset_id": "GDS1402", "description": "epithelial", "sample_id": [ "GSM72645", "GSM72646", "GSM72678", "GSM72679", "GSM72699", "GSM72700" ], "type": "cell type", "id": "GDS1402_2" }, { "dataset_id": "GDS1402", "description": "fibroblast", "sample_id": [ "GSM72654", "GSM72655", "GSM72661", "GSM72662", "GSM72663", "GSM72665", "GSM72666" ], "type": "cell type", "id": "GDS1402_3" }, { "dataset_id": "GDS1402", "description": "smooth muscle", "sample_id": [ "GSM72640", "GSM72641", "GSM72642", "GSM72643", "GSM72651", "GSM72652", "GSM72653", "GSM72656", "GSM72667", "GSM72668", "GSM72669", "GSM72670", "GSM72671", "GSM72672", "GSM72674", "GSM72675", "GSM72676", "GSM72677", "GSM72680", "GSM72682", "GSM72685", "GSM72694", "GSM72695", "GSM72696", "GSM72697", "GSM72698" ], "type": "cell type", "id": "GDS1402_4" }, { "dataset_id": "GDS1402", "description": "stromal", "sample_id": [ "GSM72648", "GSM72649", "GSM72650", "GSM72664", "GSM72673", "GSM72681" ], "type": "cell type", "id": "GDS1402_5" }, { "dataset_id": "GDS1402", "description": "aortic", "sample_id": [ "GSM72640" ], "type": "tissue", "id": "GDS1402_6" }, { "dataset_id": "GDS1402", "description": "bladder", "sample_id": [ "GSM72641", "GSM72642", "GSM72643" ], "type": "tissue", "id": "GDS1402_7" }, { "dataset_id": "GDS1402", "description": "bladder microvascular", "sample_id": [ "GSM72644" ], "type": "tissue", "id": "GDS1402_8" }, { "dataset_id": "GDS1402", "description": "cervical ectoepithelial", "sample_id": [ "GSM72645", "GSM72646" ], "type": "tissue", "id": "GDS1402_9" }, { "dataset_id": "GDS1402", "description": "cardiac microvascular", "sample_id": [ "GSM72647" ], "type": "tissue", "id": "GDS1402_10" }, { "dataset_id": "GDS1402", "description": "cardiac", "sample_id": [ "GSM72648", "GSM72649", "GSM72650" ], "type": "tissue", "id": "GDS1402_11" }, { "dataset_id": "GDS1402", "description": "colon", "sample_id": [ "GSM72651", "GSM72652" ], "type": "tissue", "id": "GDS1402_12" }, { "dataset_id": "GDS1402", "description": "hepatic artery", "sample_id": [ "GSM72653" ], "type": "tissue", "id": "GDS1402_13" }, { "dataset_id": "GDS1402", "description": "hepatic", "sample_id": [ "GSM72654", "GSM72655" ], "type": "tissue", "id": "GDS1402_14" }, { "dataset_id": "GDS1402", "description": "hepatic vein", "sample_id": [ "GSM72656" ], "type": "tissue", "id": "GDS1402_15" }, { "dataset_id": "GDS1402", "description": "iliaic artery", "sample_id": [ "GSM72657", "GSM72658", "GSM72659", "GSM72660" ], "type": "tissue", "id": "GDS1402_16" }, { "dataset_id": "GDS1402", "description": "lung", "sample_id": [ "GSM72661", "GSM72662", "GSM72663" ], "type": "tissue", "id": "GDS1402_17" }, { "dataset_id": "GDS1402", "description": "mammary", "sample_id": [ "GSM72664" ], "type": "tissue", "id": "GDS1402_18" }, { "dataset_id": "GDS1402", "description": "neonatal dermal", "sample_id": [ "GSM72665", "GSM72666" ], "type": "tissue", "id": "GDS1402_19" }, { "dataset_id": "GDS1402", "description": "pulmonary artery", "sample_id": [ "GSM72667", "GSM72668", "GSM72669", "GSM72670", "GSM72671" ], "type": "tissue", "id": "GDS1402_20" }, { "dataset_id": "GDS1402", "description": "popliteal artery", "sample_id": [ "GSM72672" ], "type": "tissue", "id": "GDS1402_21" }, { "dataset_id": "GDS1402", "description": "uterine", "sample_id": [ "GSM72696", "GSM72697" ], "type": "tissue", "id": "GDS1402_22" }, { "dataset_id": "GDS1402", "description": "prostate", "sample_id": [ "GSM72674", "GSM72675", "GSM72676", "GSM72673" ], "type": "tissue", "id": "GDS1402_23" }, { "dataset_id": "GDS1402", "description": "popliteal vein", "sample_id": [ "GSM72677" ], "type": "tissue", "id": "GDS1402_24" }, { "dataset_id": "GDS1402", "description": "renal", "sample_id": [ "GSM72678", "GSM72679" ], "type": "tissue", "id": "GDS1402_25" }, { "dataset_id": "GDS1402", "description": "renal vein", "sample_id": [ "GSM72680" ], "type": "tissue", "id": "GDS1402_26" }, { "dataset_id": "GDS1402", "description": "skeletal muscle", "sample_id": [ "GSM72681" ], "type": "tissue", "id": "GDS1402_27" }, { "dataset_id": "GDS1402", "description": "spleen", "sample_id": [ "GSM72682" ], "type": "tissue", "id": "GDS1402_28" }, { "dataset_id": "GDS1402", "description": "saphenous vein", "sample_id": [ "GSM72683", "GSM72684" ], "type": "tissue", "id": "GDS1402_29" }, { "dataset_id": "GDS1402", "description": "tibial artery", "sample_id": [ "GSM72685" ], "type": "tissue", "id": "GDS1402_30" }, { "dataset_id": "GDS1402", "description": "umbilical artery", "sample_id": [ "GSM72686", "GSM72687", "GSM72688", "GSM72689", "GSM72690", "GSM72691" ], "type": "tissue", "id": "GDS1402_31" }, { "dataset_id": "GDS1402", "description": "uterine microvascular", "sample_id": [ "GSM72692", "GSM72693" ], "type": "tissue", "id": "GDS1402_32" }, { "dataset_id": "GDS1402", "description": "urethra", "sample_id": [ "GSM72694", "GSM72695" ], "type": "tissue", "id": "GDS1402_33" }, { "dataset_id": "GDS1402", "description": "ureter", "sample_id": [ "GSM72698" ], "type": "tissue", "id": "GDS1402_34" }, { "dataset_id": "GDS1402", "description": "vaginal", "sample_id": [ "GSM72699", "GSM72700" ], "type": "tissue", "id": "GDS1402_35" } ], "taxid": "9606", "genes": 16277, "aggregation_function": "mean", "name": "GDS1402", "version": 1.0, "instances": "61", "variables": 16280, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1402.tab", "compression": "gz" } ], [ [ "GDS1404.tab" ], { "title": "Regenerating retina: time course", "description": "Expression profiling of lesioned retina at various time points up to 14 days after injury. Results provide insight into the molecular mechanisms that enable the regeneration of injured retinas in adult anamniotes.", "type": "Expression profiling by array", "pubmed_id": "16205622", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3303", "order": "none", "update_date": "Sep 19 2006", "subsets": [ { "dataset_id": "GDS1404", "description": "brain", "sample_id": [ "GSM74260" ], "type": "tissue", "id": "GDS1404_1" }, { "dataset_id": "GDS1404", "description": "retina", "sample_id": [ "GSM74261", "GSM74262", "GSM74264", "GSM74265", "GSM74267", "GSM74282", "GSM74284", "GSM74286", "GSM74288", "GSM74292", "GSM74295" ], "type": "tissue", "id": "GDS1404_2" }, { "dataset_id": "GDS1404", "description": "control", "sample_id": [ "GSM74260" ], "type": "protocol", "id": "GDS1404_3" }, { "dataset_id": "GDS1404", "description": "uninjured", "sample_id": [ "GSM74261", "GSM74262", "GSM74265", "GSM74282", "GSM74286", "GSM74292" ], "type": "protocol", "id": "GDS1404_4" }, { "dataset_id": "GDS1404", "description": "injured", "sample_id": [ "GSM74264", "GSM74267", "GSM74284", "GSM74288", "GSM74295" ], "type": "protocol", "id": "GDS1404_5" }, { "dataset_id": "GDS1404", "description": "0 d", "sample_id": [ "GSM74260", "GSM74261" ], "type": "time", "id": "GDS1404_6" }, { "dataset_id": "GDS1404", "description": "2 d", "sample_id": [ "GSM74262", "GSM74264" ], "type": "time", "id": "GDS1404_7" }, { "dataset_id": "GDS1404", "description": "3 d", "sample_id": [ "GSM74282", "GSM74284" ], "type": "time", "id": "GDS1404_8" }, { "dataset_id": "GDS1404", "description": "5 d", "sample_id": [ "GSM74292", "GSM74295" ], "type": "time", "id": "GDS1404_9" }, { "dataset_id": "GDS1404", "description": "7 d", "sample_id": [ "GSM74286", "GSM74288" ], "type": "time", "id": "GDS1404_10" }, { "dataset_id": "GDS1404", "description": "14 d", "sample_id": [ "GSM74265", "GSM74267" ], "type": "time", "id": "GDS1404_11" }, { "dataset_id": "GDS1404", "description": "control", "sample_id": [ "GSM74260", "GSM74261", "GSM74262", "GSM74282", "GSM74292", "GSM74286", "GSM74265" ], "type": "disease state", "id": "GDS1404_12" }, { "dataset_id": "GDS1404", "description": "acute injury", "sample_id": [ "GSM74264", "GSM74284", "GSM74295" ], "type": "disease state", "id": "GDS1404_13" }, { "dataset_id": "GDS1404", "description": "intermediate", "sample_id": [ "GSM74288" ], "type": "disease state", "id": "GDS1404_14" }, { "dataset_id": "GDS1404", "description": "regeneration", "sample_id": [ "GSM74267" ], "type": "disease state", "id": "GDS1404_15" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS1404", "version": 1.0, "instances": "12", "variables": 13305, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1404.tab", "compression": "gz" } ], [ [ "GDS1405.tab" ], { "title": "Pulmonary type II cell differentiation", "description": "Analysis of epithelial cells isolated from 13 fetal lungs (13-20 wks old) and cultured in dexamethasone/cyclic AMP/isobutylmethylxanthine (DCI) for 72 hrs to promote type II cell differentiation. Mature alveolar type II cells that produce surfactant are critical for adaptation to extrauterine life.", "type": "Expression profiling by array", "pubmed_id": [ "16474099", "16997883" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3306", "order": "none", "update_date": "Sep 19 2006", "subsets": [ { "dataset_id": "GDS1405", "description": "untreated", "sample_id": [ "GSM74250", "GSM74266", "GSM74320", "GSM74842", "GSM74844" ], "type": "agent", "id": "GDS1405_1" }, { "dataset_id": "GDS1405", "description": "DCI", "sample_id": [ "GSM74263", "GSM74268", "GSM74465", "GSM74843", "GSM74845" ], "type": "agent", "id": "GDS1405_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1405", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1405.tab", "compression": "gz" } ], [ [ "GDS1406.tab" ], { "title": "Brain regions of various inbred strains", "description": "Analysis of 7 brain regions of 6 inbred strains. 7 week old males from 129S6/SvEvTac, A/J, C3H/HeJ, C57BL/6J, DBA/2J, and FVB/NJ strains examined. Results correlated with behavioral phenotypes and identify candidate genes for anxiety-like behavior.", "type": "Expression profiling by array", "pubmed_id": "16244648", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "87", "value_type": "count", "reference_series": "GSE3327", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1406", "description": "129S6/SvEvTac", "sample_id": [ "GSM74912", "GSM74913", "GSM74914", "GSM74927", "GSM74928", "GSM74941", "GSM74942", "GSM74955", "GSM74956", "GSM74970", "GSM74971", "GSM74985", "GSM74986", "GSM74997", "GSM74998" ], "type": "strain", "id": "GDS1406_1" }, { "dataset_id": "GDS1406", "description": "A/J", "sample_id": [ "GSM74915", "GSM74916", "GSM74929", "GSM74930", "GSM74943", "GSM74944", "GSM74945", "GSM74957", "GSM74958", "GSM74972", "GSM74973", "GSM74987", "GSM74988", "GSM74999", "GSM75000" ], "type": "strain", "id": "GDS1406_2" }, { "dataset_id": "GDS1406", "description": "C3H/HeJ", "sample_id": [ "GSM74919", "GSM74920", "GSM74933", "GSM74934", "GSM74935", "GSM74948", "GSM74949", "GSM74961", "GSM74962", "GSM74976", "GSM74977", "GSM74991", "GSM74992", "GSM75003", "GSM75004" ], "type": "strain", "id": "GDS1406_3" }, { "dataset_id": "GDS1406", "description": "C57BL/6J", "sample_id": [ "GSM74917", "GSM74918", "GSM74931", "GSM74932", "GSM74946", "GSM74947", "GSM74959", "GSM74960", "GSM74974", "GSM74975", "GSM74989", "GSM74990", "GSM75001", "GSM75002" ], "type": "strain", "id": "GDS1406_4" }, { "dataset_id": "GDS1406", "description": "DBA/2J", "sample_id": [ "GSM74921", "GSM74922", "GSM74936", "GSM74937", "GSM74950", "GSM74951", "GSM74963", "GSM74964", "GSM74978", "GSM74979", "GSM74993", "GSM74994", "GSM75005", "GSM75006" ], "type": "strain", "id": "GDS1406_5" }, { "dataset_id": "GDS1406", "description": "FVB/NJ", "sample_id": [ "GSM74923", "GSM74924", "GSM74938", "GSM74939", "GSM74952", "GSM74953", "GSM74965", "GSM74966", "GSM74980", "GSM74981", "GSM74995", "GSM74996", "GSM75007", "GSM75008" ], "type": "strain", "id": "GDS1406_6" }, { "dataset_id": "GDS1406", "description": "amygdala", "sample_id": [ "GSM74912", "GSM74913", "GSM74914", "GSM74915", "GSM74916", "GSM74917", "GSM74918", "GSM74919", "GSM74920", "GSM74921", "GSM74922", "GSM74923", "GSM74924" ], "type": "tissue", "id": "GDS1406_7" }, { "dataset_id": "GDS1406", "description": "bed nucleus of the stria terminalis", "sample_id": [ "GSM74927", "GSM74928", "GSM74929", "GSM74930", "GSM74931", "GSM74932", "GSM74933", "GSM74934", "GSM74935", "GSM74936", "GSM74937", "GSM74938", "GSM74939" ], "type": "tissue", "id": "GDS1406_8" }, { "dataset_id": "GDS1406", "description": "cingulate cortex", "sample_id": [ "GSM74941", "GSM74942", "GSM74943", "GSM74944", "GSM74945", "GSM74946", "GSM74947", "GSM74948", "GSM74949", "GSM74950", "GSM74951", "GSM74952", "GSM74953" ], "type": "tissue", "id": "GDS1406_9" }, { "dataset_id": "GDS1406", "description": "hippocampus", "sample_id": [ "GSM74955", "GSM74956", "GSM74957", "GSM74958", "GSM74959", "GSM74960", "GSM74961", "GSM74962", "GSM74963", "GSM74964", "GSM74965", "GSM74966" ], "type": "tissue", "id": "GDS1406_10" }, { "dataset_id": "GDS1406", "description": "hypothalamus", "sample_id": [ "GSM74970", "GSM74971", "GSM74972", "GSM74973", "GSM74974", "GSM74975", "GSM74976", "GSM74977", "GSM74978", "GSM74979", "GSM74980", "GSM74981" ], "type": "tissue", "id": "GDS1406_11" }, { "dataset_id": "GDS1406", "description": "periaqueductal grey", "sample_id": [ "GSM74985", "GSM74986", "GSM74987", "GSM74988", "GSM74989", "GSM74990", "GSM74991", "GSM74992", "GSM74993", "GSM74994", "GSM74995", "GSM74996" ], "type": "tissue", "id": "GDS1406_12" }, { "dataset_id": "GDS1406", "description": "pituitary gland", "sample_id": [ "GSM74997", "GSM74998", "GSM74999", "GSM75000", "GSM75001", "GSM75002", "GSM75003", "GSM75004", "GSM75005", "GSM75006", "GSM75007", "GSM75008" ], "type": "tissue", "id": "GDS1406_13" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1406", "version": 1.0, "instances": "87", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1406.tab", "compression": "gz" } ], [ [ "GDS1407.tab" ], { "title": "Leukocyte inflammatory responses to lipopolysaccharide", "description": "Analysis of whole blood following 4 hour treatment with lipolysaccharide (LPS). Leukocytes from individuals with high and low responses to LPS examined. LPS response assessed by measuring cytokine production. Results provide insight into the variability of LPS responses between individuals.", "type": "Expression profiling by array", "pubmed_id": "16081831", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3491", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1407", "description": "untreated", "sample_id": [ "GSM78606", "GSM79052", "GSM79057", "GSM79061", "GSM79064", "GSM79066" ], "type": "agent", "id": "GDS1407_1" }, { "dataset_id": "GDS1407", "description": "LPS", "sample_id": [ "GSM78607", "GSM79054", "GSM79058", "GSM79063", "GSM79065", "GSM79067" ], "type": "agent", "id": "GDS1407_2" }, { "dataset_id": "GDS1407", "description": "low response", "sample_id": [ "GSM79052", "GSM79054", "GSM79061", "GSM79063", "GSM79065", "GSM79066" ], "type": "other", "id": "GDS1407_3" }, { "dataset_id": "GDS1407", "description": "high response", "sample_id": [ "GSM78606", "GSM78607", "GSM79057", "GSM79058", "GSM79064", "GSM79067" ], "type": "other", "id": "GDS1407_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1407", "version": 1.0, "instances": "12", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1407.tab", "compression": "gz" } ], [ [ "GDS1408.tab" ], { "title": "Auxin response factors ARF6 and ARF8", "description": "Analysis of stage 1-14 flowers from wild type Columbia, arf6/arf6 ARF8/arf8, and arf6 arf8 plants after 30 minute treatment with 10 uM indole-3-acetic acid (IAA). Results provide insight into early flower development and identify genes that respond rapidly to auxin in an ARF6/ARF8-dependent manner.", "type": "Expression profiling by array", "pubmed_id": "16107481", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2847", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1408", "description": "wild type", "sample_id": [ "GSM62687", "GSM62688", "GSM62689" ], "type": "genotype/variation", "id": "GDS1408_1" }, { "dataset_id": "GDS1408", "description": "arf6/arf6 ARF8/arf8", "sample_id": [ "GSM62690", "GSM62691" ], "type": "genotype/variation", "id": "GDS1408_2" }, { "dataset_id": "GDS1408", "description": "arf6 arf8", "sample_id": [ "GSM62692", "GSM62693" ], "type": "genotype/variation", "id": "GDS1408_3" }, { "dataset_id": "GDS1408", "description": "untreated", "sample_id": [ "GSM62687", "GSM62690", "GSM62692" ], "type": "agent", "id": "GDS1408_4" }, { "dataset_id": "GDS1408", "description": "mock", "sample_id": [ "GSM62689" ], "type": "agent", "id": "GDS1408_5" }, { "dataset_id": "GDS1408", "description": "IAA", "sample_id": [ "GSM62688", "GSM62691", "GSM62693" ], "type": "agent", "id": "GDS1408_6" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1408", "version": 1.0, "instances": "7", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1408.tab", "compression": "gz" } ], [ [ "GDS1409.tab" ], { "title": "cAMP/protein kinaseA effect on cell-cycle regulation: timecourse", "description": "Analysis of wild type and Kin- S49 lymphoma cell line treated with 8-(4-chlorophenylthio)-cAMP (8-CPT-cAMP), a PKA-selective cAMP analog, for 2, 6, or 24 hours. Kin- S49 cells lack protein kinase A (PKA). Results identify the global impact of cAMP/PKA on transcriptional networks, particularly the ce", "type": "Expression profiling by array", "pubmed_id": "15939874", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE2413", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1409", "description": "wild type", "sample_id": [ "GSM45451", "GSM45452", "GSM45453", "GSM45454", "GSM45455", "GSM45456", "GSM45457", "GSM45458", "GSM45459", "GSM45460", "GSM45461", "GSM45462", "GSM45463" ], "type": "genotype/variation", "id": "GDS1409_1" }, { "dataset_id": "GDS1409", "description": "Kin-", "sample_id": [ "GSM45464", "GSM45465", "GSM45466", "GSM45467", "GSM45468", "GSM45469", "GSM45470", "GSM45471", "GSM45472", "GSM45473", "GSM45474", "GSM45475", "GSM45476" ], "type": "genotype/variation", "id": "GDS1409_2" }, { "dataset_id": "GDS1409", "description": "0 h", "sample_id": [ "GSM45451", "GSM45452", "GSM45453", "GSM45454", "GSM45464", "GSM45465", "GSM45466", "GSM45467" ], "type": "time", "id": "GDS1409_3" }, { "dataset_id": "GDS1409", "description": "2 h", "sample_id": [ "GSM45455", "GSM45456", "GSM45457", "GSM45468", "GSM45469", "GSM45470" ], "type": "time", "id": "GDS1409_4" }, { "dataset_id": "GDS1409", "description": "6 h", "sample_id": [ "GSM45458", "GSM45459", "GSM45460", "GSM45471", "GSM45472", "GSM45473" ], "type": "time", "id": "GDS1409_5" }, { "dataset_id": "GDS1409", "description": "24 h", "sample_id": [ "GSM45461", "GSM45462", "GSM45463", "GSM45474", "GSM45475", "GSM45476" ], "type": "time", "id": "GDS1409_6" }, { "dataset_id": "GDS1409", "description": "untreated", "sample_id": [ "GSM45451", "GSM45452", "GSM45453", "GSM45454", "GSM45464", "GSM45465", "GSM45466", "GSM45467" ], "type": "agent", "id": "GDS1409_7" }, { "dataset_id": "GDS1409", "description": "cAMP", "sample_id": [ "GSM45455", "GSM45456", "GSM45457", "GSM45468", "GSM45469", "GSM45470", "GSM45458", "GSM45459", "GSM45460", "GSM45471", "GSM45472", "GSM45473", "GSM45461", "GSM45462", "GSM45463", "GSM45474", "GSM45475", "GSM45476" ], "type": "agent", "id": "GDS1409_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1409", "version": 1.0, "instances": "26", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1409.tab", "compression": "gz" } ], [ [ "GDS1411.tab" ], { "title": "HCaRG overexpression in kidney cells", "description": "Analysis of HCaRG9, a stably-transfected HEK293 embryonal kidney cell line over-expressing the hypertension-related, calcium-regulated gene (HCaRG). Results identify a role for HCaRG in kidney repair involving increased renal cell migration and transforming growth factor-alpha (TGF-\u03b1) expression.", "type": "Expression profiling by array", "pubmed_id": "16033922", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2555", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1411", "description": "Neo1 control", "sample_id": [ "GSM48671", "GSM60864" ], "type": "cell line", "id": "GDS1411_1" }, { "dataset_id": "GDS1411", "description": "HCaRG9", "sample_id": [ "GSM48672", "GSM60865" ], "type": "cell line", "id": "GDS1411_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1411", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1411.tab", "compression": "gz" } ], [ [ "GDS1412.tab" ], { "title": "Hormone replacement therapy effect on whole blood", "description": "Comparison of whole blood samples from 42 postmenopausal women on hormone replacement therapy (HRT) to those of 47 postmenopausal women not on HRT. Subjects are part of the Norwegian Women and Cancer Study (NOWAC).", "type": "Expression profiling by array", "pubmed_id": "16648556", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "89", "value_type": "log10 ratio", "reference_series": "GSE3492", "order": "none", "update_date": "Jan 27 2006", "subsets": [ { "dataset_id": "GDS1412", "description": "no treatment", "sample_id": [ "GSM78921", "GSM78922", "GSM78923", "GSM78924", "GSM78925", "GSM78926", "GSM78927", "GSM78928", "GSM78929", "GSM78930", "GSM78931", "GSM78932", "GSM78933", "GSM78934", "GSM78935", "GSM78936", "GSM78937", "GSM78938", "GSM78939", "GSM78940", "GSM78941", "GSM78942", "GSM78943", "GSM78944", "GSM78945", "GSM78946", "GSM78947", "GSM78948", "GSM78949", "GSM78950", "GSM78951", "GSM78952", "GSM78953", "GSM78954", "GSM78955", "GSM78956", "GSM78957", "GSM78958", "GSM78959", "GSM78960", "GSM78961", "GSM78962", "GSM78963", "GSM78964", "GSM78965", "GSM78966", "GSM78967" ], "type": "protocol", "id": "GDS1412_1" }, { "dataset_id": "GDS1412", "description": "hormone replacement therapy", "sample_id": [ "GSM78879", "GSM78880", "GSM78881", "GSM78882", "GSM78883", "GSM78884", "GSM78885", "GSM78886", "GSM78887", "GSM78888", "GSM78889", "GSM78890", "GSM78891", "GSM78892", "GSM78893", "GSM78894", "GSM78895", "GSM78896", "GSM78897", "GSM78898", "GSM78899", "GSM78900", "GSM78901", "GSM78902", "GSM78903", "GSM78904", "GSM78905", "GSM78906", "GSM78907", "GSM78908", "GSM78909", "GSM78910", "GSM78911", "GSM78912", "GSM78913", "GSM78914", "GSM78915", "GSM78916", "GSM78917", "GSM78918", "GSM78919", "GSM78920" ], "type": "protocol", "id": "GDS1412_2" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS1412", "version": 1.0, "instances": "89", "variables": 18357, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1412.tab", "compression": "gz" } ], [ [ "GDS1413.tab" ], { "title": "Lipid peroxidation product 4-hydroxy-2-nonenal effect on cells: time course", "description": "Analysis of RKO colorectal carcinoma cell line at 6 and 24 hours following exposure to subcytotoxic and cytotoxic amounts of 4-hydroxy-2-nonenal (HNE). HNE is an abundant product of polyunsaturated fatty acid oxidation and decomposition and reacts extensively with DNA and proteins.", "type": "Expression profiling by array", "pubmed_id": "16300372", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE2397", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1413", "description": "control", "sample_id": [ "GSM43955", "GSM45094", "GSM45108", "GSM45086", "GSM45100", "GSM45112" ], "type": "agent", "id": "GDS1413_1" }, { "dataset_id": "GDS1413", "description": "4-hydroxy-2-nonenal", "sample_id": [ "GSM43956", "GSM43957", "GSM43958", "GSM45087", "GSM45088", "GSM45090", "GSM45097", "GSM45098", "GSM45099", "GSM45101", "GSM45104", "GSM45106", "GSM45109", "GSM45110", "GSM45111", "GSM45113", "GSM45114", "GSM45115" ], "type": "agent", "id": "GDS1413_2" }, { "dataset_id": "GDS1413", "description": "control", "sample_id": [ "GSM43955", "GSM45094", "GSM45108", "GSM45086", "GSM45100", "GSM45112" ], "type": "dose", "id": "GDS1413_3" }, { "dataset_id": "GDS1413", "description": "5 uM", "sample_id": [ "GSM43956", "GSM45087", "GSM45097", "GSM45101", "GSM45109", "GSM45113" ], "type": "dose", "id": "GDS1413_4" }, { "dataset_id": "GDS1413", "description": "20 uM", "sample_id": [ "GSM43957", "GSM45088", "GSM45098", "GSM45104", "GSM45110", "GSM45114" ], "type": "dose", "id": "GDS1413_5" }, { "dataset_id": "GDS1413", "description": "60 uM", "sample_id": [ "GSM43958", "GSM45090", "GSM45099", "GSM45106", "GSM45111", "GSM45115" ], "type": "dose", "id": "GDS1413_6" }, { "dataset_id": "GDS1413", "description": "6 h", "sample_id": [ "GSM43955", "GSM43956", "GSM43957", "GSM43958", "GSM45094", "GSM45097", "GSM45098", "GSM45099", "GSM45108", "GSM45109", "GSM45110", "GSM45111" ], "type": "time", "id": "GDS1413_7" }, { "dataset_id": "GDS1413", "description": "24 h", "sample_id": [ "GSM45086", "GSM45087", "GSM45088", "GSM45090", "GSM45100", "GSM45101", "GSM45104", "GSM45106", "GSM45112", "GSM45113", "GSM45114", "GSM45115" ], "type": "time", "id": "GDS1413_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1413", "version": 1.0, "instances": "24", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1413.tab", "compression": "gz" } ], [ [ "GDS1414.tab" ], { "title": "Candoxin effect on glial cells: time course", "description": "Analysis of glial cell line Hs683 at various time points up to 48 hours following exposure to 300 nM of candoxin (CDX) snake venom. CDX is a neurotoxin that inhibits post-synaptic neuromuscular and neuronal alpha7nACh-receptors, and delays cell death in glial cells.", "type": "Expression profiling by array", "pubmed_id": "16309724", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1682", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1414", "description": "control", "sample_id": [ "GSM28995", "GSM28996", "GSM28997" ], "type": "agent", "id": "GDS1414_1" }, { "dataset_id": "GDS1414", "description": "candoxin", "sample_id": [ "GSM28998", "GSM28999", "GSM29000", "GSM29001", "GSM29002", "GSM29003", "GSM29004", "GSM29005", "GSM29006" ], "type": "agent", "id": "GDS1414_2" }, { "dataset_id": "GDS1414", "description": "0 h", "sample_id": [ "GSM28995", "GSM28996", "GSM28997" ], "type": "time", "id": "GDS1414_3" }, { "dataset_id": "GDS1414", "description": "12 h", "sample_id": [ "GSM28998", "GSM28999", "GSM29000" ], "type": "time", "id": "GDS1414_4" }, { "dataset_id": "GDS1414", "description": "24 h", "sample_id": [ "GSM29001", "GSM29002", "GSM29003" ], "type": "time", "id": "GDS1414_5" }, { "dataset_id": "GDS1414", "description": "48 h", "sample_id": [ "GSM29004", "GSM29005", "GSM29006" ], "type": "time", "id": "GDS1414_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1414", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1414.tab", "compression": "gz" } ], [ [ "GDS1419.tab" ], { "title": "Classical Hodgkin's lymphoma: T cell expression profile", "description": "Expression profiling of CD3+ T cells isolated from peripheral blood samples of untreated patients with classical Hodgkin's lymphoma. CD3+ T cells from healthy donors and patients with sarcoidosis also examined.", "type": "Expression profiling by array", "pubmed_id": [ "19172485", "17033203" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2657", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1419", "description": "normal", "sample_id": [ "GSM50980", "GSM50981" ], "type": "disease state", "id": "GDS1419_1" }, { "dataset_id": "GDS1419", "description": "sarcoidosis", "sample_id": [ "GSM50984", "GSM50985" ], "type": "disease state", "id": "GDS1419_2" }, { "dataset_id": "GDS1419", "description": "classical Hodgkin's lymphoma", "sample_id": [ "GSM50982", "GSM50983" ], "type": "disease state", "id": "GDS1419_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1419", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1419.tab", "compression": "gz" } ], [ [ "GDS1421.tab" ], { "title": "Regular exercise effect on heart", "description": "Analysis of left heart ventricle of Sprague Dawley males without access to exercise, with access to hour-long twice a week of activity, or with access to a running wheel every other day. Regimen imposed from 3 weeks until 16 months of age. Results identify putative markers of cardiovascular health.", "type": "Expression profiling by array", "pubmed_id": "16002099", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2690", "order": "none", "update_date": "Apr 03 2006", "subsets": [ { "dataset_id": "GDS1421", "description": "sedentary", "sample_id": [ "GSM52122", "GSM52123", "GSM52124", "GSM52125" ], "type": "protocol", "id": "GDS1421_1" }, { "dataset_id": "GDS1421", "description": "twice a week of activity", "sample_id": [ "GSM52114", "GSM52115", "GSM52116", "GSM52117" ], "type": "protocol", "id": "GDS1421_2" }, { "dataset_id": "GDS1421", "description": "every other day of activity", "sample_id": [ "GSM52118", "GSM52119", "GSM52120", "GSM52121" ], "type": "protocol", "id": "GDS1421_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1421", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1421.tab", "compression": "gz" } ], [ [ "GDS1422.tab" ], { "title": "Parous mammary gland response to N-methyl-N-nitrosourea", "description": "Analysis of mammary gland from parous or virgin Lewis animals 3 weeks after treatment with 50 mg/kg of N-methyl-N-nitrosourea, a carcinogen. Full-term pregnancy early in life is associated with a reduced chance of developing breast cancer.", "type": "Expression profiling by array", "pubmed_id": "16525678", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2726", "order": "none", "update_date": "Apr 05 2006", "subsets": [ { "dataset_id": "GDS1422", "description": "virgin", "sample_id": [ "GSM52683", "GSM52685" ], "type": "development stage", "id": "GDS1422_1" }, { "dataset_id": "GDS1422", "description": "parous", "sample_id": [ "GSM52682", "GSM52684" ], "type": "development stage", "id": "GDS1422_2" }, { "dataset_id": "GDS1422", "description": "untreated", "sample_id": [ "GSM52682", "GSM52683" ], "type": "agent", "id": "GDS1422_3" }, { "dataset_id": "GDS1422", "description": "N-methyl-N-nitrosourea", "sample_id": [ "GSM52684", "GSM52685" ], "type": "agent", "id": "GDS1422_4" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS1422", "version": 1.0, "instances": "4", "variables": 17253, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1422.tab", "compression": "gz" } ], [ [ "GDS1423.tab" ], { "title": "Lunasin effect on prostate epithelial cells", "description": "Expression profiling of normal prostate epithelial RWPE1 cells and tumorigenic prostate cancer RWPE2 cells treated with 2 uM lunasin for 24 hours. Lunasin is a soybean peptide shown to suppress carcinogenesis. Results provide insight into the chemopreventive properties of lunasin.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2992", "order": "none", "update_date": "Apr 05 2006", "subsets": [ { "dataset_id": "GDS1423", "description": "normal", "sample_id": [ "GSM65385", "GSM65386" ], "type": "disease state", "id": "GDS1423_1" }, { "dataset_id": "GDS1423", "description": "cancer", "sample_id": [ "GSM65387", "GSM65412" ], "type": "disease state", "id": "GDS1423_2" }, { "dataset_id": "GDS1423", "description": "untreated", "sample_id": [ "GSM65385", "GSM65387" ], "type": "agent", "id": "GDS1423_3" }, { "dataset_id": "GDS1423", "description": "lunasin", "sample_id": [ "GSM65386", "GSM65412" ], "type": "agent", "id": "GDS1423_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1423", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1423.tab", "compression": "gz" } ], [ [ "GDS1424.tab" ], { "title": "Folic acid deficiency effect on colon cancer cells", "description": "Analysis of HT-29 colon cancer cells cultured in pteroylglutamic acid or methyl-tetrahydrofolate at concentrations of 10 or 100 ng/ml each. Studies suggest that folate deficiency can have an inhibitory effect on the progression of established colonic tumor cells.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2721", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10296", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE3099", "order": "none", "update_date": "Apr 05 2006", "subsets": [ { "dataset_id": "GDS1424", "description": "pteroylglutamic acid", "sample_id": [ "GSM69207", "GSM69208", "GSM69209", "GSM69210", "GSM69211", "GSM69212", "GSM69219", "GSM69220", "GSM69221", "GSM69222", "GSM69223" ], "type": "agent", "id": "GDS1424_1" }, { "dataset_id": "GDS1424", "description": "methyl-tetrahydrofolate", "sample_id": [ "GSM69213", "GSM69214", "GSM69215", "GSM69216", "GSM69217", "GSM69218", "GSM69224", "GSM69225", "GSM69226", "GSM69227", "GSM69228" ], "type": "agent", "id": "GDS1424_2" }, { "dataset_id": "GDS1424", "description": "10 ng/ml", "sample_id": [ "GSM69219", "GSM69220", "GSM69221", "GSM69222", "GSM69223", "GSM69224", "GSM69225", "GSM69226", "GSM69227", "GSM69228" ], "type": "dose", "id": "GDS1424_3" }, { "dataset_id": "GDS1424", "description": "100 ng/ml", "sample_id": [ "GSM69207", "GSM69208", "GSM69209", "GSM69210", "GSM69211", "GSM69212", "GSM69213", "GSM69214", "GSM69215", "GSM69216", "GSM69217", "GSM69218" ], "type": "dose", "id": "GDS1424_4" } ], "taxid": "9606", "genes": 9808, "aggregation_function": "mean", "name": "GDS1424", "version": 1.0, "instances": "22", "variables": 9811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1424.tab", "compression": "gz" } ], [ [ "GDS1427.tab" ], { "title": "c-Myb and oncogenic variant v-Myb transcriptional activities", "description": "Analysis of monocytes infected with adenovirus expressing c-Myb or its oncogenic variant v-Myb, a mutated (11 AA substitutions) and truncated (N- and C-termini) version of c-Myb. Results identify dramatic, qualitative changes in the transcriptional acitivity of c-Myb caused by oncogenic mutations.", "type": "Expression profiling by array", "pubmed_id": "16205643", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2816", "order": "none", "update_date": "Apr 05 2006", "subsets": [ { "dataset_id": "GDS1427", "description": "control", "sample_id": [ "GSM60924", "GSM60925" ], "type": "infection", "id": "GDS1427_1" }, { "dataset_id": "GDS1427", "description": "c-Myb", "sample_id": [ "GSM60926", "GSM60927" ], "type": "infection", "id": "GDS1427_2" }, { "dataset_id": "GDS1427", "description": "v-Myb", "sample_id": [ "GSM60928", "GSM60929" ], "type": "infection", "id": "GDS1427_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1427", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1427.tab", "compression": "gz" } ], [ [ "GDS1429.tab" ], { "title": "Various anti-cancer drugs effect on liver: time course and dose-response", "description": "Analysis of livers of Sprague-Dawley males treated with the anticancer drug carmustine, methotrexate, or thioguanine. Animals treated daily with various doses and livers examined at various time points up to 5 days. Results combined with clinical pathology assessments in a chemogenomics database.", "type": "Expression profiling by array", "pubmed_id": "16005536", "platform": "GPL1820", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "8565", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "69", "value_type": "transformed count", "reference_series": "GSE2409", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1429", "description": "carmustine", "sample_id": [ "GSM45286", "GSM45287", "GSM45288", "GSM45289", "GSM45290", "GSM45291", "GSM45292", "GSM45293", "GSM45294", "GSM45295", "GSM45296", "GSM45297", "GSM45298", "GSM45299", "GSM45300", "GSM45301", "GSM45302", "GSM45303", "GSM45304", "GSM45305", "GSM45306", "GSM45307", "GSM45308" ], "type": "agent", "id": "GDS1429_1" }, { "dataset_id": "GDS1429", "description": "methotrexate", "sample_id": [ "GSM45309", "GSM45310", "GSM45311", "GSM45312", "GSM45313", "GSM45314", "GSM45315", "GSM45316", "GSM45317", "GSM45318", "GSM45319", "GSM45320", "GSM45321", "GSM45322", "GSM45323", "GSM45324", "GSM45325", "GSM45326", "GSM45327", "GSM45328", "GSM45329" ], "type": "agent", "id": "GDS1429_2" }, { "dataset_id": "GDS1429", "description": "thioguanine", "sample_id": [ "GSM45330", "GSM45331", "GSM45332", "GSM45333", "GSM45334", "GSM45335", "GSM45336", "GSM45337", "GSM45338", "GSM45339", "GSM45340", "GSM45341", "GSM45342", "GSM45343", "GSM45344", "GSM45345", "GSM45346", "GSM45347", "GSM45348", "GSM45349", "GSM45350", "GSM45351", "GSM45352", "GSM45353", "GSM45354" ], "type": "agent", "id": "GDS1429_3" }, { "dataset_id": "GDS1429", "description": "4 mg per kg", "sample_id": [ "GSM45298", "GSM45299", "GSM45300", "GSM45301", "GSM45302", "GSM45303", "GSM45304", "GSM45305", "GSM45306", "GSM45307", "GSM45308" ], "type": "dose", "id": "GDS1429_4" }, { "dataset_id": "GDS1429", "description": "16 mg per kg", "sample_id": [ "GSM45286", "GSM45287", "GSM45288", "GSM45289", "GSM45290", "GSM45291", "GSM45292", "GSM45293", "GSM45294", "GSM45295", "GSM45296", "GSM45297" ], "type": "dose", "id": "GDS1429_5" }, { "dataset_id": "GDS1429", "description": "0.3 mg per kg", "sample_id": [ "GSM45309", "GSM45310", "GSM45311", "GSM45312", "GSM45313", "GSM45314", "GSM45315", "GSM45316", "GSM45317", "GSM45318", "GSM45319", "GSM45320" ], "type": "dose", "id": "GDS1429_6" }, { "dataset_id": "GDS1429", "description": "27 mg per kg", "sample_id": [ "GSM45321", "GSM45322", "GSM45323", "GSM45324", "GSM45325", "GSM45326", "GSM45327", "GSM45328", "GSM45329" ], "type": "dose", "id": "GDS1429_7" }, { "dataset_id": "GDS1429", "description": "12 mg per kg", "sample_id": [ "GSM45330", "GSM45331", "GSM45332", "GSM45333", "GSM45334", "GSM45335", "GSM45336", "GSM45337", "GSM45338", "GSM45339", "GSM45340", "GSM45341" ], "type": "dose", "id": "GDS1429_8" }, { "dataset_id": "GDS1429", "description": "24 mg per kg", "sample_id": [ "GSM45342", "GSM45343", "GSM45344", "GSM45345", "GSM45346", "GSM45347", "GSM45348", "GSM45349", "GSM45350", "GSM45351", "GSM45352", "GSM45353", "GSM45354" ], "type": "dose", "id": "GDS1429_9" }, { "dataset_id": "GDS1429", "description": "0.25 d", "sample_id": [ "GSM45286", "GSM45287", "GSM45288", "GSM45298", "GSM45299", "GSM45300", "GSM45309", "GSM45310", "GSM45311", "GSM45321", "GSM45322", "GSM45330", "GSM45331", "GSM45332", "GSM45342", "GSM45343", "GSM45344" ], "type": "time", "id": "GDS1429_10" }, { "dataset_id": "GDS1429", "description": "1 d", "sample_id": [ "GSM45289", "GSM45290", "GSM45301", "GSM45302", "GSM45312", "GSM45313", "GSM45314", "GSM45323", "GSM45324", "GSM45325", "GSM45333", "GSM45334", "GSM45335", "GSM45345", "GSM45346", "GSM45347" ], "type": "time", "id": "GDS1429_11" }, { "dataset_id": "GDS1429", "description": "3 d", "sample_id": [ "GSM45291", "GSM45292", "GSM45293", "GSM45294", "GSM45303", "GSM45304", "GSM45305", "GSM45315", "GSM45316", "GSM45317", "GSM45326", "GSM45327", "GSM45328", "GSM45329", "GSM45336", "GSM45337", "GSM45338", "GSM45348", "GSM45349", "GSM45350", "GSM45351" ], "type": "time", "id": "GDS1429_12" }, { "dataset_id": "GDS1429", "description": "5 d", "sample_id": [ "GSM45295", "GSM45296", "GSM45297", "GSM45306", "GSM45307", "GSM45308", "GSM45318", "GSM45319", "GSM45320", "GSM45339", "GSM45340", "GSM45341", "GSM45352", "GSM45353", "GSM45354" ], "type": "time", "id": "GDS1429_13" } ], "taxid": "10116", "genes": 8009, "aggregation_function": "mean", "name": "GDS1429", "version": 1.0, "instances": "69", "variables": 8013, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1429.tab", "compression": "gz" } ], [ [ "GDS1431.tab" ], { "title": "Olfactory bulbectomy effect on olfactory eptithelium: time course", "description": "Analysis of the olfactory epithelium at various time points up to 5 days following olfactory bulbectomy. Olfactory bulbectomy performed to force the replacement of olfactory sensory neurons. Results provide insight into the cellular events involved in olfactory neurogenesis.", "type": "Expression profiling by array", "pubmed_id": "16027002", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2437", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1431", "description": "untreated", "sample_id": [ "GSM45675", "GSM45676", "GSM45677" ], "type": "protocol", "id": "GDS1431_1" }, { "dataset_id": "GDS1431", "description": "sham operated", "sample_id": [ "GSM45678", "GSM45679", "GSM45680" ], "type": "protocol", "id": "GDS1431_2" }, { "dataset_id": "GDS1431", "description": "olfactory bulbectomy", "sample_id": [ "GSM45681", "GSM45682", "GSM45683", "GSM45684", "GSM45685", "GSM45686", "GSM45687", "GSM45688", "GSM45689" ], "type": "protocol", "id": "GDS1431_3" }, { "dataset_id": "GDS1431", "description": "0 d", "sample_id": [ "GSM45675", "GSM45676", "GSM45677" ], "type": "time", "id": "GDS1431_4" }, { "dataset_id": "GDS1431", "description": "1 d", "sample_id": [ "GSM45681", "GSM45682", "GSM45683" ], "type": "time", "id": "GDS1431_5" }, { "dataset_id": "GDS1431", "description": "5 d", "sample_id": [ "GSM45678", "GSM45679", "GSM45680", "GSM45684", "GSM45685", "GSM45686" ], "type": "time", "id": "GDS1431_6" }, { "dataset_id": "GDS1431", "description": "7 d", "sample_id": [ "GSM45687", "GSM45688", "GSM45689" ], "type": "time", "id": "GDS1431_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1431", "version": 1.0, "instances": "15", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1431.tab", "compression": "gz" } ], [ [ "GDS1434.tab" ], { "title": "Transcription factor p63 null mutation effect on skin (MG-U74A)", "description": "Analysis of skin from transcription factor p63 homozygous null mutants at embryonic age E18.5. Without p63, the epidermis fails to commit to stratification, resulting in aborted skin development. Results identify p63 target genes and provide insight into early events in epidermal morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "16324689", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3108", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1434", "description": "wild type", "sample_id": [ "GSM69432", "GSM69433" ], "type": "genotype/variation", "id": "GDS1434_1" }, { "dataset_id": "GDS1434", "description": "p63 null homozygous", "sample_id": [ "GSM69414", "GSM69434" ], "type": "genotype/variation", "id": "GDS1434_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1434", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1434.tab", "compression": "gz" } ], [ [ "GDS1435.tab" ], { "title": "Transcription factor p63 null mutation effect on skin (MG-U74B)", "description": "Analysis of skin from transcription factor p63 homozygous null mutants at embryonic age E18.5. Without p63, the epidermis fails to commit to stratification, resulting in aborted skin development. Results identify p63 target genes and provide insight into early events in epidermal morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "16324689", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3108", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1435", "description": "wild type", "sample_id": [ "GSM69437", "GSM69438" ], "type": "genotype/variation", "id": "GDS1435_1" }, { "dataset_id": "GDS1435", "description": "p63 null homozygous", "sample_id": [ "GSM69435", "GSM69436" ], "type": "genotype/variation", "id": "GDS1435_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1435", "version": 1.0, "instances": "4", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1435.tab", "compression": "gz" } ], [ [ "GDS1436.tab" ], { "title": "Cigarette smoking effect on alveolar macrophages", "description": "Anlaysis of alveolar macrophages of 5 phenotypically normal smokers who consume ~20 packs cigarettes/year. Smoking is the leading cause of respiratory diseases collectively known as chronic obstructive pulmonary disease (COPD). Provides insight into early events in molecular pathogenesis of COPD.", "type": "Expression profiling by array", "pubmed_id": "16520944", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3212", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1436", "description": "non-smoker", "sample_id": [ "GSM71942", "GSM71991", "GSM72243", "GSM72244", "GSM72245" ], "type": "stress", "id": "GDS1436_1" }, { "dataset_id": "GDS1436", "description": "smoker", "sample_id": [ "GSM72246", "GSM72247", "GSM72248", "GSM72249", "GSM72250" ], "type": "stress", "id": "GDS1436_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS1436", "version": 1.0, "instances": "10", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1436.tab", "compression": "gz" } ], [ [ "GDS1438.tab" ], { "title": "Kidneys removed by laparoscopic donor nephrectomy", "description": "Analysis of kidneys removed by laparoscopic donor nephrectomy (LDN), a minimally invasive procedure that involves several hours of carbon dioxide pneumoperitoneum. Renal cortices of kidneys recovered by LDN compared to those removed by open donor nephrectomy.", "type": "Expression profiling by array", "pubmed_id": "16278587", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3297", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1438", "description": "open donor nephrectomy", "sample_id": [ "GSM74205", "GSM74206", "GSM74207", "GSM74208", "GSM74209", "GSM74210" ], "type": "protocol", "id": "GDS1438_1" }, { "dataset_id": "GDS1438", "description": "laparoscopic donor nephrectomy", "sample_id": [ "GSM74199", "GSM74200", "GSM74201", "GSM74202", "GSM74203", "GSM74204" ], "type": "protocol", "id": "GDS1438_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1438", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1438.tab", "compression": "gz" } ], [ [ "GDS1439.tab" ], { "title": "Prostate cancer progression", "description": "Expression profiling of prostate cancer tumors that are benign, clinically localized, or metastatic and refractory to hormones. Results compared to those obtained from immunoblotting to identify concordant changes in mRNA and protein levels.", "type": "Expression profiling by array", "pubmed_id": "16286247", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE3325", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1439", "description": "benign", "sample_id": [ "GSM74875", "GSM74876", "GSM74877", "GSM74878", "GSM74879", "GSM74880" ], "type": "disease state", "id": "GDS1439_1" }, { "dataset_id": "GDS1439", "description": "primary", "sample_id": [ "GSM74881", "GSM74882", "GSM74883", "GSM74884", "GSM74885", "GSM74886", "GSM74887" ], "type": "disease state", "id": "GDS1439_2" }, { "dataset_id": "GDS1439", "description": "metastatic", "sample_id": [ "GSM74888", "GSM74889", "GSM74890", "GSM74891", "GSM74892", "GSM74893" ], "type": "disease state", "id": "GDS1439_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1439", "version": 1.0, "instances": "19", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1439.tab", "compression": "gz" } ], [ [ "GDS144.tab" ], { "title": "Cardiac hypertrophy, exercise-induced", "description": "Effects of chronic conditioning by swimming which increases left ventricular mass and induces myocyte hypertrophy. 8 week old FVB mice swum in tanks 7 days a week for 4 weeks. Animals sacrificed at several time points up to 28 days.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE77", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS144", "description": "hypertrophy", "sample_id": [ "GSM2340", "GSM2341", "GSM2342", "GSM2346", "GSM2347", "GSM2348", "GSM2349", "GSM2350", "GSM2351", "GSM2352", "GSM2353", "GSM2354", "GSM2355", "GSM2356", "GSM2357", "GSM2358", "GSM2359", "GSM2360", "GSM2364", "GSM2365", "GSM2366" ], "type": "stress", "id": "GDS144_1" }, { "dataset_id": "GDS144", "description": "control", "sample_id": [ "GSM2343", "GSM2344", "GSM2345", "GSM2361", "GSM2362", "GSM2363", "GSM2367", "GSM2368", "GSM2369" ], "type": "stress", "id": "GDS144_2" }, { "dataset_id": "GDS144", "description": "10 minute", "sample_id": [ "GSM2340", "GSM2341", "GSM2342", "GSM2343", "GSM2344", "GSM2345" ], "type": "time", "id": "GDS144_3" }, { "dataset_id": "GDS144", "description": "2.5 day", "sample_id": [ "GSM2346", "GSM2347", "GSM2348" ], "type": "time", "id": "GDS144_4" }, { "dataset_id": "GDS144", "description": "1 week", "sample_id": [ "GSM2349", "GSM2350", "GSM2351" ], "type": "time", "id": "GDS144_5" }, { "dataset_id": "GDS144", "description": "2 week", "sample_id": [ "GSM2352", "GSM2353", "GSM2354" ], "type": "time", "id": "GDS144_6" }, { "dataset_id": "GDS144", "description": "3 week", "sample_id": [ "GSM2355", "GSM2356", "GSM2357" ], "type": "time", "id": "GDS144_7" }, { "dataset_id": "GDS144", "description": "4 week", "sample_id": [ "GSM2358", "GSM2359", "GSM2360", "GSM2361", "GSM2362", "GSM2363" ], "type": "time", "id": "GDS144_8" }, { "dataset_id": "GDS144", "description": "5 week", "sample_id": [ "GSM2364", "GSM2365", "GSM2366", "GSM2367", "GSM2368", "GSM2369" ], "type": "time", "id": "GDS144_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS144", "version": 1.0, "instances": "30", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS144.tab", "compression": "gz" } ], [ [ "GDS1440.tab" ], { "title": "Melanoma cell lines treated with a DNA methylase inhibitor", "description": "Analysis of a poorly tumorigenic melanoma cell line and its 3 highly aggressive derivative lines after treatment with 2'-deoxy-5-azacytidine (DAC), a DNA methyltransferase inhibitor. Results suggest multiple markers for melanoma progression that are regulated by DNA methylation.", "type": "Expression profiling by array", "pubmed_id": "15958521", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1793", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1440", "description": "WM793", "sample_id": [ "GSM30946", "GSM30947" ], "type": "cell line", "id": "GDS1440_1" }, { "dataset_id": "GDS1440", "description": "1205-Lu", "sample_id": [ "GSM30950", "GSM30951" ], "type": "cell line", "id": "GDS1440_2" }, { "dataset_id": "GDS1440", "description": "WM793-P1N1", "sample_id": [ "GSM30948" ], "type": "cell line", "id": "GDS1440_3" }, { "dataset_id": "GDS1440", "description": "WM793-P2N1", "sample_id": [ "GSM30949" ], "type": "cell line", "id": "GDS1440_4" }, { "dataset_id": "GDS1440", "description": "poorly tumorigenic", "sample_id": [ "GSM30946", "GSM30947" ], "type": "cell type", "id": "GDS1440_5" }, { "dataset_id": "GDS1440", "description": "highly tumorigenic", "sample_id": [ "GSM30948", "GSM30949", "GSM30950", "GSM30951" ], "type": "cell type", "id": "GDS1440_6" }, { "dataset_id": "GDS1440", "description": "untreated", "sample_id": [ "GSM30946", "GSM30950" ], "type": "agent", "id": "GDS1440_7" }, { "dataset_id": "GDS1440", "description": "DAC", "sample_id": [ "GSM30947", "GSM30948", "GSM30949", "GSM30951" ], "type": "agent", "id": "GDS1440_8" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS1440", "version": 1.0, "instances": "6", "variables": 6188, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1440.tab", "compression": "gz" } ], [ [ "GDS1443.tab" ], { "title": "Type 2 diabetes susceptibility: role of hepatic lipogenic capacity", "description": "Analysis of adipose tissue, liver, skeletal muscle, and pancreatic islets from non-diabetic (C57BL/6J (B6)) and severely diabetic (BTBR) strains of obese (ob/ob), 14 week old males. Results correlate increased hepatic lipogenic gene expression in B6-ob/ob with type 2 diabetes resistance.", "type": "Expression profiling by array", "pubmed_id": "12606510", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2899", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1443", "description": "adipose", "sample_id": [ "GSM63273", "GSM63274", "GSM63275", "GSM63276" ], "type": "tissue", "id": "GDS1443_1" }, { "dataset_id": "GDS1443", "description": "liver", "sample_id": [ "GSM63277", "GSM63278", "GSM63279", "GSM63280" ], "type": "tissue", "id": "GDS1443_2" }, { "dataset_id": "GDS1443", "description": "soleus muscle", "sample_id": [ "GSM63281", "GSM63282", "GSM63283", "GSM63284" ], "type": "tissue", "id": "GDS1443_3" }, { "dataset_id": "GDS1443", "description": "pancreatic islet", "sample_id": [ "GSM63285", "GSM63286", "GSM63287", "GSM63288" ], "type": "tissue", "id": "GDS1443_4" }, { "dataset_id": "GDS1443", "description": "C57BL/6J(B6)-ob/ob", "sample_id": [ "GSM63273", "GSM63274", "GSM63277", "GSM63278", "GSM63281", "GSM63282", "GSM63285", "GSM63286" ], "type": "genotype/variation", "id": "GDS1443_5" }, { "dataset_id": "GDS1443", "description": "BTBR-ob/ob", "sample_id": [ "GSM63275", "GSM63276", "GSM63279", "GSM63280", "GSM63283", "GSM63284", "GSM63287", "GSM63288" ], "type": "genotype/variation", "id": "GDS1443_6" }, { "dataset_id": "GDS1443", "description": "nondiabetic", "sample_id": [ "GSM63273", "GSM63274", "GSM63277", "GSM63278", "GSM63281", "GSM63282", "GSM63285", "GSM63286" ], "type": "disease state", "id": "GDS1443_7" }, { "dataset_id": "GDS1443", "description": "severely diabetic", "sample_id": [ "GSM63275", "GSM63276", "GSM63279", "GSM63280", "GSM63283", "GSM63284", "GSM63287", "GSM63288" ], "type": "disease state", "id": "GDS1443_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1443", "version": 1.0, "instances": "16", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1443.tab", "compression": "gz" } ], [ [ "GDS1444.tab" ], { "title": "Obesity and type 2 diabetes: role of adipogenic gene expression (Mu11K-A)", "description": "Analysis of lean (C57BL/6J (B6), BTBR, F1 (B6xBTBR)), obese (B6-ob/ob), and obese-diabetic (F2 (B6xBTBR)-ob/ob [increasingly hyperglycemic], BTBR-ob/ob [severely diabetic]) strains. Results identify decreased adipogenic gene expression in obesity and further changes in the progression to diabetes.", "type": "Expression profiling by array", "pubmed_id": "11027337", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE2952", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1444", "description": "C57BL/6J (B6)", "sample_id": [ "GSM64376", "GSM64377" ], "type": "genotype/variation", "id": "GDS1444_1" }, { "dataset_id": "GDS1444", "description": "BTBR", "sample_id": [ "GSM64380", "GSM64382" ], "type": "genotype/variation", "id": "GDS1444_2" }, { "dataset_id": "GDS1444", "description": "F1(B6 x BTBR)", "sample_id": [ "GSM64384", "GSM64386" ], "type": "genotype/variation", "id": "GDS1444_3" }, { "dataset_id": "GDS1444", "description": "B6-ob/ob", "sample_id": [ "GSM64378" ], "type": "genotype/variation", "id": "GDS1444_4" }, { "dataset_id": "GDS1444", "description": "BTBR-ob/ob", "sample_id": [ "GSM64383" ], "type": "genotype/variation", "id": "GDS1444_5" }, { "dataset_id": "GDS1444", "description": "F2(B6 x BTBR)-ob/ob", "sample_id": [ "GSM64387", "GSM64389", "GSM64390" ], "type": "genotype/variation", "id": "GDS1444_6" }, { "dataset_id": "GDS1444", "description": "lean", "sample_id": [ "GSM64376", "GSM64377", "GSM64380", "GSM64382", "GSM64384", "GSM64386" ], "type": "disease state", "id": "GDS1444_7" }, { "dataset_id": "GDS1444", "description": "obese-diabetic (low glucose)", "sample_id": [ "GSM64389" ], "type": "disease state", "id": "GDS1444_8" }, { "dataset_id": "GDS1444", "description": "obese-diabetic (medium glucose)", "sample_id": [ "GSM64390" ], "type": "disease state", "id": "GDS1444_9" }, { "dataset_id": "GDS1444", "description": "obese-diabetic (high glucose)", "sample_id": [ "GSM64387" ], "type": "disease state", "id": "GDS1444_10" }, { "dataset_id": "GDS1444", "description": "obese", "sample_id": [ "GSM64378" ], "type": "disease state", "id": "GDS1444_11" }, { "dataset_id": "GDS1444", "description": "obese-diabetic (severe diabetes)", "sample_id": [ "GSM64383" ], "type": "disease state", "id": "GDS1444_12" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS1444", "version": 1.0, "instances": "11", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1444.tab", "compression": "gz" } ], [ [ "GDS1445.tab" ], { "title": "Transcription factor Oct-1 deficient fibroblast response to ionizing radiation (430A)", "description": "Expression profiling of Oct-1 deficient 3T3-immortalized embryonic fibroblasts exposed to gamma radiation. Oct-1 is a POU domain transcription factor. Results provide insight into the role of Oct-1 in the adaptation to cellular stress.", "type": "Expression profiling by array", "pubmed_id": "16322220", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE2084", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1445", "description": "wild type", "sample_id": [ "GSM37691", "GSM37692", "GSM37693", "GSM37694", "GSM37696", "GSM37697", "GSM37698", "GSM37700" ], "type": "genotype/variation", "id": "GDS1445_1" }, { "dataset_id": "GDS1445", "description": "Oct-1 deficient", "sample_id": [ "GSM37682", "GSM37683", "GSM37684", "GSM37685", "GSM37687", "GSM37688", "GSM37689", "GSM37690" ], "type": "genotype/variation", "id": "GDS1445_2" }, { "dataset_id": "GDS1445", "description": "control", "sample_id": [ "GSM37691", "GSM37692", "GSM37693", "GSM37694", "GSM37682", "GSM37683", "GSM37684", "GSM37685" ], "type": "agent", "id": "GDS1445_3" }, { "dataset_id": "GDS1445", "description": "gamma radiation", "sample_id": [ "GSM37696", "GSM37697", "GSM37698", "GSM37700", "GSM37687", "GSM37688", "GSM37689", "GSM37690" ], "type": "agent", "id": "GDS1445_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1445", "version": 1.0, "instances": "16", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1445.tab", "compression": "gz" } ], [ [ "GDS1446.tab" ], { "title": "Transcription factor Oct-1 deficient fibroblast response to ionizing radiation (430B)", "description": "Expression profiling of Oct-1 deficient 3T3-immortalized embryonic fibroblasts exposed to gamma radiation. Oct-1 is a POU domain transcription factor. Results provide insight into the role of Oct-1 in the adaptation to cellular stress.", "type": "Expression profiling by array", "pubmed_id": "16322220", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE2084", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1446", "description": "wild type", "sample_id": [ "GSM37835", "GSM37837", "GSM37838", "GSM37839", "GSM37840", "GSM37841", "GSM37842", "GSM37976" ], "type": "genotype/variation", "id": "GDS1446_1" }, { "dataset_id": "GDS1446", "description": "Oct-1 deficient", "sample_id": [ "GSM37843", "GSM37844", "GSM37845", "GSM37846", "GSM37847", "GSM37848", "GSM37849", "GSM37977" ], "type": "genotype/variation", "id": "GDS1446_2" }, { "dataset_id": "GDS1446", "description": "control", "sample_id": [ "GSM37835", "GSM37837", "GSM37838", "GSM37839", "GSM37843", "GSM37844", "GSM37845", "GSM37977" ], "type": "agent", "id": "GDS1446_3" }, { "dataset_id": "GDS1446", "description": "gamma radiation", "sample_id": [ "GSM37840", "GSM37841", "GSM37842", "GSM37846", "GSM37847", "GSM37848", "GSM37849", "GSM37976" ], "type": "agent", "id": "GDS1446_4" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1446", "version": 1.0, "instances": "16", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1446.tab", "compression": "gz" } ], [ [ "GDS1447.tab" ], { "title": "Bronchial epithelial cell response to vanadium and zinc", "description": "Analysis of bronchial epithelial cells after 4 hours of exposure to 50 uM vanadium (V) or zinc (Zn). Excessive V and Zn in the air can arise from the burning of heavy fuel and during welding and smelting operations, respectively. Results identify biomarkers that distinguish V from Zn exposure.", "type": "Expression profiling by array", "pubmed_id": "16330358", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2111", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1447", "description": "control", "sample_id": [ "GSM38117", "GSM38118", "GSM38119", "GSM38120" ], "type": "agent", "id": "GDS1447_1" }, { "dataset_id": "GDS1447", "description": "vanadium", "sample_id": [ "GSM38121", "GSM38122", "GSM38123", "GSM38124" ], "type": "agent", "id": "GDS1447_2" }, { "dataset_id": "GDS1447", "description": "zinc", "sample_id": [ "GSM38125", "GSM38126", "GSM38127", "GSM38128" ], "type": "agent", "id": "GDS1447_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1447", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1447.tab", "compression": "gz" } ], [ [ "GDS1448.tab" ], { "title": "Anoxia and sucrose effect on seedlings", "description": "Analysis of ecotype Columbia glabra seedlings subjected to anoxia for 6 hours in the presence or absence of 90 uM sucrose. Exogenous sucrose enhances the tolerance of seedlings to anoxia. Results identify candidate genes that enhance the tolerance of sucrose treated seedlings to anoxia.", "type": "Expression profiling by array", "pubmed_id": "15734908", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2133", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1448", "description": "aerobic", "sample_id": [ "GSM38613", "GSM38614" ], "type": "protocol", "id": "GDS1448_1" }, { "dataset_id": "GDS1448", "description": "anaerobic", "sample_id": [ "GSM38615", "GSM38616", "GSM38617", "GSM38618" ], "type": "protocol", "id": "GDS1448_2" }, { "dataset_id": "GDS1448", "description": "control", "sample_id": [ "GSM38613", "GSM38614", "GSM38615", "GSM38616" ], "type": "agent", "id": "GDS1448_3" }, { "dataset_id": "GDS1448", "description": "sucrose", "sample_id": [ "GSM38617", "GSM38618" ], "type": "agent", "id": "GDS1448_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1448", "version": 1.0, "instances": "6", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1448.tab", "compression": "gz" } ], [ [ "GDS1449.tab" ], { "title": "HIV-1 infection effect on peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells from HIV-1 seropositive and seronegative individuals. Results used to identify a 10-gene signature used for determining HIV-1 serostatus, and a 6-gene signature to identify seropositive individuals exhibiting changes in CD4+ T cell counts.", "type": "Expression profiling by array", "pubmed_id": "15897992", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "87", "value_type": "count", "reference_series": "GSE2171", "order": "none", "update_date": "Apr 17 2006", "subsets": [ { "dataset_id": "GDS1449", "description": "HIV-1 seronegative", "sample_id": [ "GSM39104", "GSM39105", "GSM39106", "GSM39107", "GSM39108", "GSM39109", "GSM39110", "GSM39111", "GSM39112", "GSM39113", "GSM39114", "GSM39115" ], "type": "disease state", "id": "GDS1449_1" }, { "dataset_id": "GDS1449", "description": "HIV-1 seropositive", "sample_id": [ "GSM39116", "GSM39117", "GSM39118", "GSM39119", "GSM39120", "GSM39121", "GSM39122", "GSM39123", "GSM39124", "GSM39125", "GSM39126", "GSM39127", "GSM39128", "GSM39129", "GSM39130", "GSM39131", "GSM39132", "GSM39133", "GSM39134", "GSM39135", "GSM39136", "GSM39137", "GSM39138", "GSM39139", "GSM39140", "GSM39141", "GSM39142", "GSM39143", "GSM39144", "GSM39145", "GSM39146", "GSM39147", "GSM39148", "GSM39149", "GSM39150", "GSM39151", "GSM39152", "GSM39153", "GSM39154", "GSM39155", "GSM39156", "GSM39157", "GSM39158", "GSM39159", "GSM39160", "GSM39161", "GSM39162", "GSM39163", "GSM39164", "GSM39165", "GSM39166", "GSM39167", "GSM39168", "GSM39169", "GSM39170", "GSM39171", "GSM39172", "GSM39173", "GSM39174", "GSM39175", "GSM39176", "GSM39177", "GSM39178", "GSM39179", "GSM39180", "GSM39181", "GSM39182", "GSM39183", "GSM39184", "GSM39185", "GSM39186", "GSM39187", "GSM39188", "GSM39189", "GSM39190" ], "type": "disease state", "id": "GDS1449_2" }, { "dataset_id": "GDS1449", "description": "control", "sample_id": [ "GSM39104", "GSM39105", "GSM39106", "GSM39107", "GSM39108", "GSM39109", "GSM39110", "GSM39111", "GSM39112", "GSM39113", "GSM39114", "GSM39115" ], "type": "other", "id": "GDS1449_3" }, { "dataset_id": "GDS1449", "description": "decrease in CD4 cells", "sample_id": [ "GSM39148", "GSM39149", "GSM39150", "GSM39151", "GSM39152", "GSM39153", "GSM39154", "GSM39155", "GSM39156", "GSM39157", "GSM39158", "GSM39159", "GSM39160", "GSM39161", "GSM39162", "GSM39163", "GSM39164", "GSM39165", "GSM39166", "GSM39167", "GSM39168", "GSM39169", "GSM39170" ], "type": "other", "id": "GDS1449_4" }, { "dataset_id": "GDS1449", "description": "increase in CD4 cells", "sample_id": [ "GSM39171", "GSM39172", "GSM39173", "GSM39174", "GSM39175", "GSM39176", "GSM39177", "GSM39178", "GSM39179", "GSM39180", "GSM39181", "GSM39182", "GSM39183", "GSM39184", "GSM39185", "GSM39186", "GSM39187" ], "type": "other", "id": "GDS1449_5" }, { "dataset_id": "GDS1449", "description": "unknown CD4 cell status", "sample_id": [ "GSM39116", "GSM39117", "GSM39118", "GSM39119", "GSM39120", "GSM39121", "GSM39122", "GSM39123", "GSM39124", "GSM39125", "GSM39126", "GSM39127", "GSM39128", "GSM39129", "GSM39130", "GSM39131", "GSM39132", "GSM39133", "GSM39134", "GSM39135", "GSM39136", "GSM39137", "GSM39138", "GSM39139", "GSM39140", "GSM39141", "GSM39142", "GSM39143", "GSM39144", "GSM39145", "GSM39146", "GSM39147", "GSM39188", "GSM39189", "GSM39190" ], "type": "other", "id": "GDS1449_6" }, { "dataset_id": "GDS1449", "description": "control", "sample_id": [ "GSM39104", "GSM39105", "GSM39106", "GSM39107", "GSM39108", "GSM39109", "GSM39110", "GSM39111", "GSM39112", "GSM39113", "GSM39114", "GSM39115" ], "type": "protocol", "id": "GDS1449_7" }, { "dataset_id": "GDS1449", "description": "drug-naive", "sample_id": [ "GSM39116", "GSM39117", "GSM39118", "GSM39119", "GSM39120", "GSM39121", "GSM39122", "GSM39123", "GSM39124", "GSM39125", "GSM39126", "GSM39127", "GSM39128", "GSM39129", "GSM39130", "GSM39131", "GSM39132", "GSM39133", "GSM39134", "GSM39135", "GSM39136", "GSM39137" ], "type": "protocol", "id": "GDS1449_8" }, { "dataset_id": "GDS1449", "description": "drug regimen not indicated", "sample_id": [ "GSM39138", "GSM39139", "GSM39140", "GSM39141", "GSM39142", "GSM39143", "GSM39144", "GSM39145", "GSM39146", "GSM39147", "GSM39148", "GSM39149", "GSM39150", "GSM39151", "GSM39152", "GSM39153", "GSM39154", "GSM39155", "GSM39156", "GSM39157", "GSM39158", "GSM39159", "GSM39160", "GSM39161", "GSM39162", "GSM39163", "GSM39164", "GSM39165", "GSM39166", "GSM39167", "GSM39168", "GSM39169", "GSM39170", "GSM39171", "GSM39172", "GSM39173", "GSM39174", "GSM39175", "GSM39176", "GSM39177", "GSM39178", "GSM39179", "GSM39180", "GSM39181", "GSM39182", "GSM39183", "GSM39184", "GSM39185", "GSM39186", "GSM39187", "GSM39188", "GSM39189", "GSM39190" ], "type": "protocol", "id": "GDS1449_9" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1449", "version": 1.0, "instances": "87", "variables": 8553, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1449.tab", "compression": "gz" } ], [ [ "GDS145.tab" ], { "title": "Serum stimulation with cycloheximide time course", "description": "Analysis of the transcriptional program in the response of human fibroblasts to serum. Serum added to fibroblasts in the presence of cycloheximide and samples taken at 0, 0.5, 2 and 4 hours.", "type": "Expression profiling by array", "pubmed_id": "9872747", "platform": "GPL169", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE56", "order": "ordered", "update_date": "Jun 23 2003", "subsets": [ { "dataset_id": "GDS145", "description": "0 hour", "sample_id": [ "GSM2168" ], "type": "time", "id": "GDS145_1" }, { "dataset_id": "GDS145", "description": "0.5 hour", "sample_id": [ "GSM2163" ], "type": "time", "id": "GDS145_2" }, { "dataset_id": "GDS145", "description": "2 hour", "sample_id": [ "GSM2166" ], "type": "time", "id": "GDS145_3" }, { "dataset_id": "GDS145", "description": "4 hour", "sample_id": [ "GSM2169" ], "type": "time", "id": "GDS145_4" } ], "taxid": "9606", "genes": 9209, "aggregation_function": "mean", "name": "GDS145", "version": 1.0, "instances": "4", "variables": 9211, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS145.tab", "compression": "gz" } ], [ [ "GDS1450.tab" ], { "title": "Hypoxia effect on seedlings", "description": "Expression profiling of 7 day old wild type Ler seedlings subjected to 12 hours of hypoxia under low light conditions. Total RNA and mRNA extracted from large polyribosomes compared. Results provide insight into the role of translational regulation in the response to hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16081496", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2218", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1450", "description": "control", "sample_id": [ "GSM40552", "GSM40554" ], "type": "stress", "id": "GDS1450_1" }, { "dataset_id": "GDS1450", "description": "hypoxia", "sample_id": [ "GSM40553", "GSM40555" ], "type": "stress", "id": "GDS1450_2" }, { "dataset_id": "GDS1450", "description": "total RNA", "sample_id": [ "GSM40552", "GSM40553" ], "type": "protocol", "id": "GDS1450_3" }, { "dataset_id": "GDS1450", "description": "polysomal mRNA", "sample_id": [ "GSM40554", "GSM40555" ], "type": "protocol", "id": "GDS1450_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1450", "version": 1.0, "instances": "4", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1450.tab", "compression": "gz" } ], [ [ "GDS1451.tab" ], { "title": "Toxicants effect on liver: pooled and individual sample comparison", "description": "Analysis of livers of Sprague-Dawley males at various time points up to 168 hours after treatment with clofibrate, diethylhexylphthalate, or valproic acid. Expression profiles from pooled and individual samples compared. Results provide insight into the impact of pooling on experimental analysis.", "type": "Expression profiling by array", "pubmed_id": "15914576", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "94", "value_type": "count", "reference_series": "GSE2303", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1451", "description": "clofibrate", "sample_id": [ "GSM42878", "GSM42879", "GSM42880", "GSM42881", "GSM42882", "GSM42883", "GSM42914", "GSM42915", "GSM42916", "GSM42917", "GSM42918", "GSM42919", "GSM42920", "GSM42921", "GSM42922", "GSM42923", "GSM42924", "GSM42925", "GSM42952", "GSM42953", "GSM42954", "GSM42955", "GSM42956", "GSM42957", "GSM42958", "GSM42959", "GSM42966", "GSM42967", "GSM42968", "GSM42969", "GSM42970", "GSM42971" ], "type": "agent", "id": "GDS1451_1" }, { "dataset_id": "GDS1451", "description": "diethylhexylphthalate", "sample_id": [ "GSM42884", "GSM42885", "GSM42886", "GSM42887", "GSM42888", "GSM42889", "GSM42890", "GSM42891", "GSM42892", "GSM42893", "GSM42894", "GSM42895", "GSM42908", "GSM42909", "GSM42910", "GSM42911", "GSM42912", "GSM42913", "GSM42940", "GSM42941", "GSM42942", "GSM42943", "GSM42948", "GSM42949", "GSM42950", "GSM42951", "GSM42960", "GSM42961", "GSM42962", "GSM42963", "GSM42964", "GSM42965" ], "type": "agent", "id": "GDS1451_2" }, { "dataset_id": "GDS1451", "description": "valproic acid", "sample_id": [ "GSM42896", "GSM42897", "GSM42898", "GSM42899", "GSM42900", "GSM42901", "GSM42902", "GSM42903", "GSM42904", "GSM42905", "GSM42906", "GSM42907", "GSM42926", "GSM42927", "GSM42928", "GSM42929", "GSM42930", "GSM42931", "GSM42932", "GSM42933", "GSM42934", "GSM42935", "GSM42936", "GSM42937", "GSM42938", "GSM42939", "GSM42944", "GSM42945", "GSM42946", "GSM42947" ], "type": "agent", "id": "GDS1451_3" }, { "dataset_id": "GDS1451", "description": "4 h", "sample_id": [ "GSM42936", "GSM42937", "GSM42938", "GSM42939", "GSM42940", "GSM42941", "GSM42942", "GSM42943", "GSM42952", "GSM42953", "GSM42954", "GSM42955" ], "type": "time", "id": "GDS1451_4" }, { "dataset_id": "GDS1451", "description": "24 h", "sample_id": [ "GSM42944", "GSM42945", "GSM42946", "GSM42947", "GSM42948", "GSM42949", "GSM42950", "GSM42951", "GSM42956", "GSM42957", "GSM42958", "GSM42959" ], "type": "time", "id": "GDS1451_5" }, { "dataset_id": "GDS1451", "description": "48 h", "sample_id": [ "GSM42890", "GSM42891", "GSM42892", "GSM42893", "GSM42894", "GSM42895", "GSM42902", "GSM42903", "GSM42904", "GSM42905", "GSM42906", "GSM42907", "GSM42908", "GSM42909", "GSM42910", "GSM42911", "GSM42912", "GSM42913", "GSM42914", "GSM42915", "GSM42916", "GSM42917", "GSM42918", "GSM42919", "GSM42920", "GSM42921", "GSM42922", "GSM42923", "GSM42924", "GSM42925", "GSM42931", "GSM42932", "GSM42933", "GSM42934", "GSM42935" ], "type": "time", "id": "GDS1451_6" }, { "dataset_id": "GDS1451", "description": "168 h", "sample_id": [ "GSM42878", "GSM42879", "GSM42880", "GSM42881", "GSM42882", "GSM42883", "GSM42884", "GSM42885", "GSM42886", "GSM42887", "GSM42888", "GSM42889", "GSM42896", "GSM42897", "GSM42898", "GSM42899", "GSM42900", "GSM42901", "GSM42926", "GSM42927", "GSM42928", "GSM42929", "GSM42930", "GSM42960", "GSM42961", "GSM42962", "GSM42963", "GSM42964", "GSM42965", "GSM42966", "GSM42967", "GSM42968", "GSM42969", "GSM42970", "GSM42971" ], "type": "time", "id": "GDS1451_7" }, { "dataset_id": "GDS1451", "description": "individual samples", "sample_id": [ "GSM42878", "GSM42879", "GSM42880", "GSM42881", "GSM42882", "GSM42884", "GSM42885", "GSM42886", "GSM42887", "GSM42888", "GSM42890", "GSM42891", "GSM42892", "GSM42893", "GSM42894", "GSM42896", "GSM42897", "GSM42898", "GSM42899", "GSM42900", "GSM42902", "GSM42903", "GSM42904", "GSM42905", "GSM42906", "GSM42908", "GSM42909", "GSM42910", "GSM42911", "GSM42912", "GSM42914", "GSM42915", "GSM42916", "GSM42917", "GSM42918", "GSM42920", "GSM42921", "GSM42922", "GSM42923", "GSM42924", "GSM42926", "GSM42927", "GSM42928", "GSM42929", "GSM42931", "GSM42932", "GSM42933", "GSM42934", "GSM42936", "GSM42937", "GSM42938", "GSM42940", "GSM42941", "GSM42942", "GSM42944", "GSM42945", "GSM42946", "GSM42948", "GSM42949", "GSM42950", "GSM42952", "GSM42953", "GSM42954", "GSM42956", "GSM42957", "GSM42958", "GSM42960", "GSM42961", "GSM42962", "GSM42963", "GSM42964", "GSM42966", "GSM42967", "GSM42968", "GSM42969", "GSM42970" ], "type": "protocol", "id": "GDS1451_8" }, { "dataset_id": "GDS1451", "description": "pooled samples", "sample_id": [ "GSM42883", "GSM42889", "GSM42895", "GSM42901", "GSM42907", "GSM42913", "GSM42919", "GSM42925", "GSM42930", "GSM42935", "GSM42939", "GSM42943", "GSM42947", "GSM42951", "GSM42955", "GSM42959", "GSM42965", "GSM42971" ], "type": "protocol", "id": "GDS1451_9" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1451", "version": 1.0, "instances": "94", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1451.tab", "compression": "gz" } ], [ [ "GDS1452.tab" ], { "title": "Mammary gland response to retinoic X receptor ligand: pooled and individual sample comparison", "description": "Analysis of mammary glands from Wistar Furth females fed a diet supplemented with the retinoic X receptor ligand LG100268. Expression profiles from pooled and individual samples compared. Results provide insight into the impact of pooling on experimental analysis.", "type": "Expression profiling by array", "pubmed_id": "15755808", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE2331", "order": "none", "update_date": "Apr 17 2006", "subsets": [ { "dataset_id": "GDS1452", "description": "untreated", "sample_id": [ "GSM43123", "GSM43124", "GSM43125", "GSM43126", "GSM43127", "GSM43128", "GSM43129", "GSM43130", "GSM43131", "GSM43132", "GSM43133", "GSM43134", "GSM43135", "GSM43136", "GSM43137", "GSM43138", "GSM43139", "GSM43140", "GSM43141", "GSM43142", "GSM43143", "GSM43144", "GSM43145", "GSM43146", "GSM43147", "GSM43148", "GSM43149", "GSM43150" ], "type": "agent", "id": "GDS1452_1" }, { "dataset_id": "GDS1452", "description": "LG100268", "sample_id": [ "GSM43095", "GSM43096", "GSM43097", "GSM43098", "GSM43099", "GSM43100", "GSM43101", "GSM43102", "GSM43103", "GSM43104", "GSM43105", "GSM43106", "GSM43107", "GSM43108", "GSM43109", "GSM43110", "GSM43111", "GSM43112", "GSM43113", "GSM43114", "GSM43115", "GSM43116", "GSM43117", "GSM43118", "GSM43119", "GSM43120", "GSM43121", "GSM43122" ], "type": "agent", "id": "GDS1452_2" }, { "dataset_id": "GDS1452", "description": "individual samples", "sample_id": [ "GSM43097", "GSM43098", "GSM43101", "GSM43102", "GSM43105", "GSM43106", "GSM43107", "GSM43108", "GSM43110", "GSM43112", "GSM43114", "GSM43115", "GSM43117", "GSM43118", "GSM43125", "GSM43126", "GSM43129", "GSM43131", "GSM43132", "GSM43133", "GSM43136", "GSM43137", "GSM43138", "GSM43139", "GSM43141", "GSM43143", "GSM43145", "GSM43146", "GSM43120", "GSM43121", "GSM43122", "GSM43148", "GSM43149", "GSM43150" ], "type": "protocol", "id": "GDS1452_3" }, { "dataset_id": "GDS1452", "description": "pooled samples", "sample_id": [ "GSM43095", "GSM43096", "GSM43099", "GSM43100", "GSM43103", "GSM43104", "GSM43109", "GSM43111", "GSM43113", "GSM43116", "GSM43119", "GSM43123", "GSM43124", "GSM43127", "GSM43128", "GSM43130", "GSM43134", "GSM43135", "GSM43140", "GSM43142", "GSM43144", "GSM43147" ], "type": "protocol", "id": "GDS1452_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1452", "version": 1.0, "instances": "56", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1452.tab", "compression": "gz" } ], [ [ "GDS1453.tab" ], { "title": "Camptothecin effect on renal epithelial cell line and HIV transduction", "description": "Analysis of renal epithelial cell line 293T following treatment with 2 uM camptothecin, which boosts transduction of cells by HIV. Camptothecin induces DNA damage and arrests cell cycle at G2/M. Results provide insight into the mechanisms underlying HIV transduction boost induced by camptothecin.", "type": "Expression profiling by array", "pubmed_id": "15827184", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2451", "order": "none", "update_date": "Apr 17 2006", "subsets": [ { "dataset_id": "GDS1453", "description": "untreated", "sample_id": [ "GSM46396", "GSM46397" ], "type": "agent", "id": "GDS1453_1" }, { "dataset_id": "GDS1453", "description": "camptothecin", "sample_id": [ "GSM46398", "GSM46399" ], "type": "agent", "id": "GDS1453_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1453", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1453.tab", "compression": "gz" } ], [ [ "GDS1455.tab" ], { "title": "Motoneuron characterization", "description": "Analysis of lateral and medial motoneurons (MNs) from lumbar segments and sympathetic preganglionic motoneurons located in the thoracic intermediolateral nucleus. MNs isolated by laser capture microdissection. Results provide insight into the molecular differences between adult MN types.", "type": "Expression profiling by array", "pubmed_id": "16317082", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE2595", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1455", "description": "lateral motoneuron", "sample_id": [ "GSM49869", "GSM49870", "GSM49875", "GSM49876", "GSM49881", "GSM49882", "GSM49887", "GSM49888", "GSM49893", "GSM49894" ], "type": "cell type", "id": "GDS1455_1" }, { "dataset_id": "GDS1455", "description": "medial motoneuron", "sample_id": [ "GSM49871", "GSM49872", "GSM49877", "GSM49878", "GSM49883", "GSM49884", "GSM49889", "GSM49890", "GSM49895", "GSM49896" ], "type": "cell type", "id": "GDS1455_2" }, { "dataset_id": "GDS1455", "description": "intermediolateral column motoneuron", "sample_id": [ "GSM49873", "GSM49874", "GSM49879", "GSM49880", "GSM49885", "GSM49886", "GSM49891", "GSM49892", "GSM49897", "GSM49898" ], "type": "cell type", "id": "GDS1455_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1455", "version": 1.0, "instances": "30", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1455.tab", "compression": "gz" } ], [ [ "GDS1456.tab" ], { "title": "Obesity and type 2 diabetes: role of adipogenic gene expression (Mu11K-B)", "description": "Analysis of lean (C57BL/6J (B6), BTBR, F1 (B6xBTBR)), obese (B6-ob/ob), and obese-diabetic (F2 (B6xBTBR)-ob/ob [increasingly hyperglycemic], BTBR-ob/ob [severely diabetic]) strains. Results identify decreased adipogenic gene expression in obesity and further changes in the progression to diabetes.", "type": "Expression profiling by array", "pubmed_id": "11027337", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE2952", "order": "none", "update_date": "Apr 06 2006", "subsets": [ { "dataset_id": "GDS1456", "description": "C57BL/6J (B6)", "sample_id": [ "GSM64391", "GSM64392" ], "type": "genotype/variation", "id": "GDS1456_1" }, { "dataset_id": "GDS1456", "description": "BTBR", "sample_id": [ "GSM64394", "GSM64395" ], "type": "genotype/variation", "id": "GDS1456_2" }, { "dataset_id": "GDS1456", "description": "F1(B6 x BTBR)", "sample_id": [ "GSM64397", "GSM64398" ], "type": "genotype/variation", "id": "GDS1456_3" }, { "dataset_id": "GDS1456", "description": "B6-ob/ob", "sample_id": [ "GSM64393" ], "type": "genotype/variation", "id": "GDS1456_4" }, { "dataset_id": "GDS1456", "description": "BTBR-ob/ob", "sample_id": [ "GSM64396" ], "type": "genotype/variation", "id": "GDS1456_5" }, { "dataset_id": "GDS1456", "description": "F2(B6 x BTBR)-ob/ob", "sample_id": [ "GSM64399", "GSM64400", "GSM64401" ], "type": "genotype/variation", "id": "GDS1456_6" }, { "dataset_id": "GDS1456", "description": "lean", "sample_id": [ "GSM64391", "GSM64392", "GSM64394", "GSM64395", "GSM64397", "GSM64398" ], "type": "disease state", "id": "GDS1456_7" }, { "dataset_id": "GDS1456", "description": "obese", "sample_id": [ "GSM64393" ], "type": "disease state", "id": "GDS1456_8" }, { "dataset_id": "GDS1456", "description": "obese-diabetic (low glucose)", "sample_id": [ "GSM64400" ], "type": "disease state", "id": "GDS1456_9" }, { "dataset_id": "GDS1456", "description": "obese-diabetic (medium glucose)", "sample_id": [ "GSM64401" ], "type": "disease state", "id": "GDS1456_10" }, { "dataset_id": "GDS1456", "description": "obese-diabetic (high glucose)", "sample_id": [ "GSM64399" ], "type": "disease state", "id": "GDS1456_11" }, { "dataset_id": "GDS1456", "description": "obese-diabetic (severe diabetes)", "sample_id": [ "GSM64396" ], "type": "disease state", "id": "GDS1456_12" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS1456", "version": 1.0, "instances": "11", "variables": 6163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1456.tab", "compression": "gz" } ], [ [ "GDS1464.tab" ], { "title": "Essential hypertension SHR model", "description": "Comparison of adrenal gland from spontaneously hypertensive (SHR) males at 4 weeks of age, a prehypertensive stage, and normotensive Wistar-Kyoto. Results compared to gene expression in hypertensive BPH mouse model, and provides insight into mechanisms of hypertension shared across species.", "type": "Expression profiling by array", "pubmed_id": "15882546", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1675", "order": "none", "update_date": "Apr 13 2006", "subsets": [ { "dataset_id": "GDS1464", "description": "normotensive", "sample_id": [ "GSM28684", "GSM28685", "GSM28686" ], "type": "disease state", "id": "GDS1464_1" }, { "dataset_id": "GDS1464", "description": "hypertensive", "sample_id": [ "GSM28681", "GSM28682", "GSM28683" ], "type": "disease state", "id": "GDS1464_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1464", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1464.tab", "compression": "gz" } ], [ [ "GDS1465.tab" ], { "title": "IFN-gamma and host genetic background effect on Yersinia enterocolitica infected macrophages", "description": "Analysis of bone marrow derived macrophages from resistant C57BL/6 or susceptible BALB/c animals, with or without IFN-gamma pretreatment, infected with Yersinia enterocolitica. Results provide insight into the impact of host genetic background and IFN-gamma on Y. enterocolitica infections.", "type": "Expression profiling by array", "pubmed_id": "16352694", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE2973", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1465", "description": "BALB/c", "sample_id": [ "GSM64988", "GSM64989", "GSM64990", "GSM64991", "GSM64992", "GSM64993", "GSM64994", "GSM64995", "GSM64996", "GSM64997", "GSM64998", "GSM64999", "GSM65000", "GSM65001", "GSM65002", "GSM65003", "GSM65004", "GSM65005", "GSM65006" ], "type": "genotype/variation", "id": "GDS1465_1" }, { "dataset_id": "GDS1465", "description": "C57BL/6J", "sample_id": [ "GSM65007", "GSM65008", "GSM65009", "GSM65010", "GSM65011", "GSM65012", "GSM65013", "GSM65014", "GSM65015", "GSM65016", "GSM65017", "GSM65018", "GSM65019", "GSM65020", "GSM65021", "GSM65022", "GSM65023", "GSM65024" ], "type": "genotype/variation", "id": "GDS1465_2" }, { "dataset_id": "GDS1465", "description": "untreated", "sample_id": [ "GSM64988", "GSM64989", "GSM64990", "GSM65007", "GSM65008", "GSM65009", "GSM64995", "GSM64996", "GSM64997", "GSM65013", "GSM65014", "GSM65015", "GSM65001", "GSM65002", "GSM65003", "GSM65019", "GSM65020", "GSM65021" ], "type": "agent", "id": "GDS1465_3" }, { "dataset_id": "GDS1465", "description": "IFN-gamma", "sample_id": [ "GSM64991", "GSM64992", "GSM64993", "GSM64994", "GSM65010", "GSM65011", "GSM65012", "GSM64998", "GSM64999", "GSM65000", "GSM65016", "GSM65017", "GSM65018", "GSM65004", "GSM65005", "GSM65006", "GSM65022", "GSM65023", "GSM65024" ], "type": "agent", "id": "GDS1465_4" }, { "dataset_id": "GDS1465", "description": "infected", "sample_id": [ "GSM64995", "GSM64996", "GSM64997", "GSM64998", "GSM64999", "GSM65000", "GSM65001", "GSM65002", "GSM65003", "GSM65004", "GSM65005", "GSM65006", "GSM65013", "GSM65014", "GSM65015", "GSM65016", "GSM65017", "GSM65018", "GSM65019", "GSM65020", "GSM65021", "GSM65022", "GSM65023", "GSM65024" ], "type": "disease state", "id": "GDS1465_5" }, { "dataset_id": "GDS1465", "description": "uninfected", "sample_id": [ "GSM64988", "GSM64989", "GSM64990", "GSM64991", "GSM64992", "GSM64993", "GSM64994", "GSM65007", "GSM65008", "GSM65009", "GSM65010", "GSM65011", "GSM65012" ], "type": "disease state", "id": "GDS1465_6" }, { "dataset_id": "GDS1465", "description": "control", "sample_id": [ "GSM64995", "GSM64996", "GSM64997", "GSM64998", "GSM64999", "GSM65000", "GSM65013", "GSM65014", "GSM65015", "GSM65016", "GSM65017", "GSM65018" ], "type": "strain", "id": "GDS1465_7" }, { "dataset_id": "GDS1465", "description": "virulent", "sample_id": [ "GSM65001", "GSM65002", "GSM65003", "GSM65004", "GSM65005", "GSM65006", "GSM65019", "GSM65020", "GSM65021", "GSM65022", "GSM65023", "GSM65024" ], "type": "strain", "id": "GDS1465_8" }, { "dataset_id": "GDS1465", "description": "none", "sample_id": [ "GSM64988", "GSM64989", "GSM64990", "GSM64991", "GSM64992", "GSM64993", "GSM64994", "GSM65007", "GSM65008", "GSM65009", "GSM65010", "GSM65011", "GSM65012" ], "type": "strain", "id": "GDS1465_9" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1465", "version": 1.0, "instances": "37", "variables": 13881, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1465.tab", "compression": "gz" } ], [ [ "GDS1466.tab" ], { "title": "DICER-LIKE 4 mutant", "description": "Analysis of rosette leaf and inflorescence tissues from the DICER-LIKE (DCL) 4 mutant dcl4-2. DCL genes have specialized functions in small RNA biogenesis for RNA interference-related processes. Results provide insight into the role of DCL4 in the trans-acting siRNA pathway.", "type": "Expression profiling by array", "pubmed_id": "16129836", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE3011", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1466", "description": "leaf", "sample_id": [ "GSM65917", "GSM65918", "GSM65919", "GSM65920", "GSM65921", "GSM65922", "GSM65923", "GSM65924", "GSM65925", "GSM65926", "GSM65927", "GSM65928" ], "type": "tissue", "id": "GDS1466_1" }, { "dataset_id": "GDS1466", "description": "inflorescence", "sample_id": [ "GSM65929", "GSM65930", "GSM65931", "GSM65932", "GSM65933", "GSM65934", "GSM65935", "GSM65936", "GSM65937", "GSM65938", "GSM65939", "GSM65940", "GSM65941", "GSM65942", "GSM65943" ], "type": "tissue", "id": "GDS1466_2" }, { "dataset_id": "GDS1466", "description": "wild type control", "sample_id": [ "GSM65917", "GSM65918", "GSM65919" ], "type": "genotype/variation", "id": "GDS1466_3" }, { "dataset_id": "GDS1466", "description": "wild type control for dcl4-2, rdr6-15", "sample_id": [ "GSM65929", "GSM65930", "GSM65931" ], "type": "genotype/variation", "id": "GDS1466_4" }, { "dataset_id": "GDS1466", "description": "wild type control for dcl1-7", "sample_id": [ "GSM65938", "GSM65939", "GSM65940" ], "type": "genotype/variation", "id": "GDS1466_5" }, { "dataset_id": "GDS1466", "description": "dcl1-7", "sample_id": [ "GSM65926", "GSM65927", "GSM65928", "GSM65941", "GSM65942", "GSM65943" ], "type": "genotype/variation", "id": "GDS1466_6" }, { "dataset_id": "GDS1466", "description": "dcl4-2", "sample_id": [ "GSM65920", "GSM65921", "GSM65922", "GSM65932", "GSM65933", "GSM65934" ], "type": "genotype/variation", "id": "GDS1466_7" }, { "dataset_id": "GDS1466", "description": "rdr6-15", "sample_id": [ "GSM65923", "GSM65924", "GSM65925", "GSM65935", "GSM65936", "GSM65937" ], "type": "genotype/variation", "id": "GDS1466_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1466", "version": 1.0, "instances": "27", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1466.tab", "compression": "gz" } ], [ [ "GDS1467.tab" ], { "title": "TGF-beta-activated kinase 1 deficient B cell response to B cell receptor stimulation", "description": "Analysis of TGF-beta activated kinase 1 (TAK1)-deficient B cells following B cell receptor (BCR) activation by anti-IgM treatment for 4 hours. Results provide insight into how TAK1 regulates BCR-mediated proliferative responses.", "type": "Expression profiling by array", "pubmed_id": "16186825", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3065", "order": "none", "update_date": "Aug 23 2006", "subsets": [ { "dataset_id": "GDS1467", "description": "control", "sample_id": [ "GSM67266", "GSM67267" ], "type": "cell line", "id": "GDS1467_1" }, { "dataset_id": "GDS1467", "description": "TAK1 deficient", "sample_id": [ "GSM67268", "GSM67269" ], "type": "cell line", "id": "GDS1467_2" }, { "dataset_id": "GDS1467", "description": "unstimulated", "sample_id": [ "GSM67266", "GSM67268" ], "type": "agent", "id": "GDS1467_3" }, { "dataset_id": "GDS1467", "description": "anti-IgM", "sample_id": [ "GSM67267", "GSM67269" ], "type": "agent", "id": "GDS1467_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1467", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1467.tab", "compression": "gz" } ], [ [ "GDS1468.tab" ], { "title": "Neuromuscular degeneration mutant spinal cord response to neural stem cell transplantation", "description": "Analysis of neuromuscular degeneration mutant (nmd) spinal cords transplanted with ALDHhiSSClo neural stem cells. nmd is a model for spinal muscular atrophy with respiratory distress type 1. Results provide insight into the mechanisms underlying neuromuscular improvements in stem cell recipients.", "type": "Expression profiling by array", "pubmed_id": "16339214", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3075", "order": "none", "update_date": "Aug 23 2006", "subsets": [ { "dataset_id": "GDS1468", "description": "wild type", "sample_id": [ "GSM67523", "GSM67524", "GSM67525" ], "type": "genotype/variation", "id": "GDS1468_1" }, { "dataset_id": "GDS1468", "description": "nmd", "sample_id": [ "GSM67526", "GSM67529", "GSM67530", "GSM67531", "GSM67532", "GSM67533" ], "type": "genotype/variation", "id": "GDS1468_2" }, { "dataset_id": "GDS1468", "description": "untreated", "sample_id": [ "GSM67523", "GSM67524", "GSM67525", "GSM67526", "GSM67529", "GSM67530" ], "type": "agent", "id": "GDS1468_3" }, { "dataset_id": "GDS1468", "description": "ALDHhiSSClo neural stem cells", "sample_id": [ "GSM67531", "GSM67532", "GSM67533" ], "type": "agent", "id": "GDS1468_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1468", "version": 1.0, "instances": "9", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1468.tab", "compression": "gz" } ], [ [ "GDS1472.tab" ], { "title": "Transcription factor Spotted-dick knockdown", "description": "Expression profiling of cultured S2 cells following inactivation of spotted-dick, a gene encoding a zinc finger transcriptional activator of S phase genes. RNAi used to inactivate spotted-dick. Results identify potential downstream targets of Spotted-dick.", "type": "Expression profiling by array", "pubmed_id": "16369566", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2623", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1472", "description": "control", "sample_id": [ "GSM50397", "GSM50398", "GSM50399" ], "type": "protocol", "id": "GDS1472_1" }, { "dataset_id": "GDS1472", "description": "spotted-dick knockdown", "sample_id": [ "GSM50400", "GSM50401", "GSM50402" ], "type": "protocol", "id": "GDS1472_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS1472", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1472.tab", "compression": "gz" } ], [ [ "GDS1473.tab" ], { "title": "Transcription factor Tcf1 knockout effect on pancreatic islets (MG-U74A)", "description": "Analysis of pancreatic islets from 6 to 8 week old Tcf1 knockouts. Mutations in Tcf1 lead to a subtype of type 2 diabetes called maturity-onset diabetes of the young (MODY) in humans. Results identify potential targets of Tcf1 that may be responsible for mediating pancreatic beta cell growth.", "type": "Expression profiling by array", "pubmed_id": "16330324", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3544", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1473", "description": "wild type", "sample_id": [ "GSM81390", "GSM81391" ], "type": "genotype/variation", "id": "GDS1473_1" }, { "dataset_id": "GDS1473", "description": "Tcf1 knockout", "sample_id": [ "GSM81392", "GSM81393" ], "type": "genotype/variation", "id": "GDS1473_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1473", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1473.tab", "compression": "gz" } ], [ [ "GDS1474.tab" ], { "title": "Transcription factor Tcf1 knockout effect on pancreatic islets (MG-U74B)", "description": "Analysis of pancreatic islets from 6 to 8 week old Tcf1 knockouts. Mutations in Tcf1 lead to a subtype of type 2 diabetes called maturity-onset diabetes of the young (MODY) in humans. Results identify potential targets of Tcf1 that may be responsible for mediating pancreatic beta cell growth.", "type": "Expression profiling by array", "pubmed_id": "16330324", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3544", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1474", "description": "wild type", "sample_id": [ "GSM81394", "GSM81395" ], "type": "genotype/variation", "id": "GDS1474_1" }, { "dataset_id": "GDS1474", "description": "Tcf1 knockout", "sample_id": [ "GSM81396", "GSM81397" ], "type": "genotype/variation", "id": "GDS1474_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1474", "version": 1.0, "instances": "4", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1474.tab", "compression": "gz" } ], [ [ "GDS1475.tab" ], { "title": "Rho/CRIK signaling modulation effect on keratinocyte", "description": "Analysis of keratinocytes expressing activated Rho or Citron kinase (CRIK), or treated with C3 transferase. Rho plays a positive role during early differentiation, CRIK is a Rho effector, and C3 is a Rho inhibitor. Results provide insight into the role of Rho/CRIK in later stages of differentiation.", "type": "Expression profiling by array", "pubmed_id": "16061799", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3162", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1475", "description": "GST control", "sample_id": [ "GSM63809", "GSM63810" ], "type": "agent", "id": "GDS1475_1" }, { "dataset_id": "GDS1475", "description": "C3 transferase toxin", "sample_id": [ "GSM63803", "GSM63804" ], "type": "agent", "id": "GDS1475_2" }, { "dataset_id": "GDS1475", "description": "GFP control", "sample_id": [ "GSM63807", "GSM63808" ], "type": "agent", "id": "GDS1475_3" }, { "dataset_id": "GDS1475", "description": "activated Rho", "sample_id": [ "GSM63811", "GSM63812" ], "type": "agent", "id": "GDS1475_4" }, { "dataset_id": "GDS1475", "description": "activated CRIK", "sample_id": [ "GSM63805", "GSM63806" ], "type": "agent", "id": "GDS1475_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1475", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1475.tab", "compression": "gz" } ], [ [ "GDS1476.tab" ], { "title": "Uterine fibroids with fumarate hydratase mutations", "description": "Analysis of 7 uterine fibroids carrying fumarate hydratase (FH) mutations. FH catalyzes hydration of fumarate in the Krebs tricarboxylic acid cycle. Results provide insight into the connection between the disruption of mitochondrial metabolic pathways and neoplasia.", "type": "Expression profiling by array", "pubmed_id": "16319128", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE2152", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1476", "description": "wild type fumarate hydratase", "sample_id": [ "GSM38674", "GSM38675", "GSM38676", "GSM38677", "GSM38678", "GSM38679", "GSM38680", "GSM38681", "GSM38682", "GSM38683", "GSM38684", "GSM38685", "GSM38686", "GSM38687", "GSM38688" ], "type": "genotype/variation", "id": "GDS1476_1" }, { "dataset_id": "GDS1476", "description": "mutant fumarate hydratase", "sample_id": [ "GSM38689", "GSM38690", "GSM38691", "GSM38692", "GSM38693", "GSM38694", "GSM38695" ], "type": "genotype/variation", "id": "GDS1476_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1476", "version": 1.0, "instances": "22", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1476.tab", "compression": "gz" } ], [ [ "GDS1477.tab" ], { "title": "Transcription factor FoxM1 inactivation effect on breast cancer cell", "description": "Expression profiling of BT-20 breast cancer cells 48 hours after transfection with FoxM1 siRNA. Elevated expression of FoxM1 has been observed in hepatocellular carcinoma, basal cell carcinoma, and breast cancer. Results provide insight into the role of FoxM1 in cancer cell growth.", "type": "Expression profiling by array", "pubmed_id": "15958562", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2222", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1477", "description": "mock", "sample_id": [ "GSM40651", "GSM40652", "GSM40653" ], "type": "protocol", "id": "GDS1477_1" }, { "dataset_id": "GDS1477", "description": "GFP siRNA", "sample_id": [ "GSM40654", "GSM40655", "GSM40656" ], "type": "protocol", "id": "GDS1477_2" }, { "dataset_id": "GDS1477", "description": "FoxM1 siRNA", "sample_id": [ "GSM40657", "GSM40658", "GSM40659" ], "type": "protocol", "id": "GDS1477_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1477", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1477.tab", "compression": "gz" } ], [ [ "GDS1478.tab" ], { "title": "Intestinal epithelial cell response to probiotic Escherichia coli strain Nissle 1917", "description": "Analysis of Caco-2 intestinal epithelial cells cocultured for 6 hours with the probiotic Escherichia coli strain Nissle 1917 (EcN). A controlled clinical trial suggests that EcN is effective in remission maintenance of ulcerative colitis. Results provide insight into EcN-host interactions.", "type": "Expression profiling by array", "pubmed_id": "16351713", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2232", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1478", "description": "control", "sample_id": [ "GSM40938", "GSM40941" ], "type": "agent", "id": "GDS1478_1" }, { "dataset_id": "GDS1478", "description": "Escherichia coli strain Nissle", "sample_id": [ "GSM40881", "GSM40937" ], "type": "agent", "id": "GDS1478_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1478", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1478.tab", "compression": "gz" } ], [ [ "GDS1479.tab" ], { "title": "Carcinoma in situ lesions of the urinary bladder", "description": "Analysis of bladder biopsies of superficial transitional cell carcinomas with or without surrounding carcinoma in situ (CIS) lesions and muscle invasive carcinomas (mTCC). CIS is a common mTCC precursor. Results provide insight into which tumors in early stage bladder cancer are likely to progress.", "type": "Expression profiling by array", "pubmed_id": "15173019", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "count", "reference_series": "GSE3167", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1479", "description": "normal urothelium", "sample_id": [ "GSM71019", "GSM71020", "GSM71021", "GSM71022", "GSM71023", "GSM71024", "GSM71025", "GSM71026", "GSM71027" ], "type": "specimen", "id": "GDS1479_1" }, { "dataset_id": "GDS1479", "description": "superficial transitional cell carcinoma w/ surrounding carcinoma in situ lesion", "sample_id": [ "GSM71028", "GSM71030", "GSM71032", "GSM71034", "GSM71035", "GSM71038", "GSM71043", "GSM71046", "GSM71053", "GSM71061", "GSM71062", "GSM71063", "GSM71068" ], "type": "specimen", "id": "GDS1479_2" }, { "dataset_id": "GDS1479", "description": "superficial transitional cell carcinoma w/o surrounding carcinoma in situ (CIS) lesion", "sample_id": [ "GSM71029", "GSM71031", "GSM71033", "GSM71036", "GSM71042", "GSM71044", "GSM71045", "GSM71049", "GSM71055", "GSM71056", "GSM71058", "GSM71059", "GSM71064", "GSM71065", "GSM71067" ], "type": "specimen", "id": "GDS1479_3" }, { "dataset_id": "GDS1479", "description": "muscle invasive carcinoma", "sample_id": [ "GSM71037", "GSM71039", "GSM71040", "GSM71041", "GSM71047", "GSM71048", "GSM71050", "GSM71051", "GSM71052", "GSM71054", "GSM71057", "GSM71060", "GSM71066" ], "type": "specimen", "id": "GDS1479_4" }, { "dataset_id": "GDS1479", "description": "carcinoma in situ lesion", "sample_id": [ "GSM71070", "GSM71072", "GSM71074", "GSM71076", "GSM71077" ], "type": "specimen", "id": "GDS1479_5" }, { "dataset_id": "GDS1479", "description": "normal mucosa", "sample_id": [ "GSM71069", "GSM71071", "GSM71073", "GSM71075", "GSM71078" ], "type": "specimen", "id": "GDS1479_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1479", "version": 1.0, "instances": "60", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1479.tab", "compression": "gz" } ], [ [ "GDS1480.tab" ], { "title": "Obesity: preadipocyte expression profile (HG-U133A)", "description": "Analysis of cultured abdominal subcutaneous preadipocytes from 7 male and 7 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of preadipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16034612", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE2510", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1480", "description": "lean", "sample_id": [ "GSM47878", "GSM47879", "GSM47880", "GSM47881", "GSM47882", "GSM47883", "GSM47884", "GSM47885", "GSM47886", "GSM47887", "GSM47888", "GSM47889", "GSM47890", "GSM47891" ], "type": "disease state", "id": "GDS1480_1" }, { "dataset_id": "GDS1480", "description": "obese", "sample_id": [ "GSM47892", "GSM47893", "GSM47894", "GSM47895", "GSM47896", "GSM47897", "GSM47898", "GSM47899", "GSM47900", "GSM47901", "GSM47902", "GSM47903", "GSM47904", "GSM47905" ], "type": "disease state", "id": "GDS1480_2" }, { "dataset_id": "GDS1480", "description": "male", "sample_id": [ "GSM47885", "GSM47886", "GSM47887", "GSM47888", "GSM47889", "GSM47890", "GSM47891", "GSM47899", "GSM47900", "GSM47901", "GSM47902", "GSM47903", "GSM47904", "GSM47905" ], "type": "gender", "id": "GDS1480_3" }, { "dataset_id": "GDS1480", "description": "female", "sample_id": [ "GSM47878", "GSM47879", "GSM47880", "GSM47881", "GSM47882", "GSM47883", "GSM47884", "GSM47892", "GSM47893", "GSM47894", "GSM47895", "GSM47896", "GSM47897", "GSM47898" ], "type": "gender", "id": "GDS1480_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1480", "version": 1.0, "instances": "28", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1480.tab", "compression": "gz" } ], [ [ "GDS1481.tab" ], { "title": "Obesity: preadipocyte expression profile (HG-U133B)", "description": "Analysis of cultured abdominal subcutaneous preadipocytes from 7 male and 7 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of preadipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16034612", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE2510", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1481", "description": "lean", "sample_id": [ "GSM47906", "GSM47907", "GSM47908", "GSM47909", "GSM47910", "GSM47911", "GSM47912", "GSM47913", "GSM47914", "GSM47935", "GSM47936", "GSM47937", "GSM47938", "GSM47939" ], "type": "disease state", "id": "GDS1481_1" }, { "dataset_id": "GDS1481", "description": "obese", "sample_id": [ "GSM47940", "GSM47941", "GSM47942", "GSM47943", "GSM47944", "GSM47945", "GSM47946", "GSM47947", "GSM47948", "GSM47950", "GSM47951", "GSM47952", "GSM47953", "GSM47954" ], "type": "disease state", "id": "GDS1481_2" }, { "dataset_id": "GDS1481", "description": "male", "sample_id": [ "GSM47913", "GSM47914", "GSM47935", "GSM47936", "GSM47937", "GSM47938", "GSM47939", "GSM47947", "GSM47948", "GSM47950", "GSM47951", "GSM47952", "GSM47953", "GSM47954" ], "type": "gender", "id": "GDS1481_3" }, { "dataset_id": "GDS1481", "description": "female", "sample_id": [ "GSM47906", "GSM47907", "GSM47908", "GSM47909", "GSM47910", "GSM47911", "GSM47912", "GSM47940", "GSM47941", "GSM47942", "GSM47943", "GSM47944", "GSM47945", "GSM47946" ], "type": "gender", "id": "GDS1481_4" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1481", "version": 1.0, "instances": "28", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1481.tab", "compression": "gz" } ], [ [ "GDS1484.tab" ], { "title": "Anticarcinogen 3H-1, 2-dithiole-3-thione effect on liver", "description": "Analysis of livers of animals treated with 3H-1, 2-dithiole-3-thione (D3T). D3T blocks carcinogenesis through induction of phase 2 enzymes that enhance the detoxification of xenobiotic compounds. Results provide insight into the regulatory pathways affected by D3T.", "type": "Expression profiling by array", "pubmed_id": "16317079", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3173", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1484", "description": "untreated", "sample_id": [ "GSM71311", "GSM71368", "GSM71369", "GSM71370" ], "type": "agent", "id": "GDS1484_1" }, { "dataset_id": "GDS1484", "description": "3H-1, 2-dithiole-3-thione", "sample_id": [ "GSM71371", "GSM71372", "GSM71373", "GSM71374" ], "type": "agent", "id": "GDS1484_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1484", "version": 1.0, "instances": "8", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1484.tab", "compression": "gz" } ], [ [ "GDS1485.tab" ], { "title": "Gpr1 receptor and Gpa2 G protein alpha subunit deletion mutants", "description": "Expression profiling of mutants lacking the Gpr1 receptor or the Gpa2 G protein alpha subunit. Results provide insight into the role of the Gpr1 receptor and the Gpa2 G protein alpha subunit in the maintenance and modulation of cell size in response to glucose.", "type": "Expression profiling by array", "pubmed_id": "15743410", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE970", "order": "none", "update_date": "May 08 2006", "subsets": [ { "dataset_id": "GDS1485", "description": "wild type", "sample_id": [ "GSM15281", "GSM15283" ], "type": "genotype/variation", "id": "GDS1485_1" }, { "dataset_id": "GDS1485", "description": "gpr1 mutant", "sample_id": [ "GSM15277", "GSM15279" ], "type": "genotype/variation", "id": "GDS1485_2" }, { "dataset_id": "GDS1485", "description": "gpa1 mutant", "sample_id": [ "GSM15273", "GSM15275" ], "type": "genotype/variation", "id": "GDS1485_3" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1485", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1485.tab", "compression": "gz" } ], [ [ "GDS1486.tab" ], { "title": "Serum response factor null mutation effect on neonatal cardiomyocytes", "description": "Analysis of serum response factor (SRF)-null neonatal cardiomyocytes. SRF is a transcriptional regulator required for mesodermal development and implicated in myogenesis. Results provide insight into the role of SRF in regulating genetic programs important for controlling cardiomyocyte function.", "type": "Expression profiling by array", "pubmed_id": "16368687", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3181", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1486", "description": "wildtype", "sample_id": [ "GSM71592", "GSM71606", "GSM71608" ], "type": "genotype/variation", "id": "GDS1486_1" }, { "dataset_id": "GDS1486", "description": "serum response factor null mutant", "sample_id": [ "GSM71610", "GSM71612", "GSM71613" ], "type": "genotype/variation", "id": "GDS1486_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1486", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1486.tab", "compression": "gz" } ], [ [ "GDS1488.tab" ], { "title": "Intermediate filament protein GFAP transgene overexpression effect on olfactory bulb: time course", "description": "Analysis of olfactory bulb of 23 day and 4 month old transgenics overexpressing human intermediate filament protein GFAP. GFAP missense mutations result in Alexander disease, a neurodegenerative disease. GFAP overexpression results in an encephalopathy similar to that resulting from GFAP mutations.", "type": "Expression profiling by array", "pubmed_id": "16014634", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE977", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1488", "description": "wild type", "sample_id": [ "GSM15436", "GSM15438", "GSM15439", "GSM15444", "GSM15445", "GSM15447" ], "type": "genotype/variation", "id": "GDS1488_1" }, { "dataset_id": "GDS1488", "description": "GFAP transgenic", "sample_id": [ "GSM15441", "GSM15442", "GSM15443", "GSM15448", "GSM15449", "GSM15450" ], "type": "genotype/variation", "id": "GDS1488_2" }, { "dataset_id": "GDS1488", "description": "23 d", "sample_id": [ "GSM15436", "GSM15438", "GSM15439", "GSM15441", "GSM15442", "GSM15443" ], "type": "age", "id": "GDS1488_3" }, { "dataset_id": "GDS1488", "description": "120 d", "sample_id": [ "GSM15444", "GSM15445", "GSM15447", "GSM15448", "GSM15449", "GSM15450" ], "type": "age", "id": "GDS1488_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1488", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1488.tab", "compression": "gz" } ], [ [ "GDS1489.tab" ], { "title": "Growth hormone effect on adipocytes: time course", "description": "Analysis of cultured 3T3-F442A adipocytes treated with 500 nM growth hormone (GH). Adipocytes examined at various time points up to 48 hours following treatment with GH. Chronic GH treatment induces metabolic changes consistent with insulin resistance in 3T3-F442A adipocytes.", "type": "Expression profiling by array", "pubmed_id": "16326703", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2120", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1489", "description": "control", "sample_id": [ "GSM38277", "GSM38278", "GSM38279", "GSM38283", "GSM38284", "GSM38285", "GSM38289", "GSM38290", "GSM38291" ], "type": "agent", "id": "GDS1489_1" }, { "dataset_id": "GDS1489", "description": "growth hormone", "sample_id": [ "GSM38280", "GSM38281", "GSM38282", "GSM38286", "GSM38287", "GSM38288", "GSM38292", "GSM38293", "GSM38294" ], "type": "agent", "id": "GDS1489_2" }, { "dataset_id": "GDS1489", "description": "0.5 h", "sample_id": [ "GSM38277", "GSM38280", "GSM38283", "GSM38286", "GSM38289", "GSM38292" ], "type": "time", "id": "GDS1489_3" }, { "dataset_id": "GDS1489", "description": "4 h", "sample_id": [ "GSM38278", "GSM38281", "GSM38284", "GSM38287", "GSM38290", "GSM38293" ], "type": "time", "id": "GDS1489_4" }, { "dataset_id": "GDS1489", "description": "48 h", "sample_id": [ "GSM38279", "GSM38282", "GSM38285", "GSM38288", "GSM38291", "GSM38294" ], "type": "time", "id": "GDS1489_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1489", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1489.tab", "compression": "gz" } ], [ [ "GDS1490.tab" ], { "title": "Neural tissue profiling", "description": "Expression profiling of 24 neural tissues and 10 body regions from adult A/J, C57BL/6J, C3H/HeJ, DBA/2J, and 129S6/SvEvTac males. Relationship of regional gene expression in the brain to architecture and organization of the brain examined.", "type": "Expression profiling by array", "pubmed_id": "16002470", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "150", "value_type": "count", "reference_series": "GSE3594", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1490", "description": "non-neural", "sample_id": [ "GSM83018", "GSM83019", "GSM83020", "GSM83038", "GSM83039", "GSM83003", "GSM83021", "GSM83023", "GSM83024", "GSM83031", "GSM83014", "GSM83017", "GSM83025", "GSM83034", "GSM83040", "GSM83011", "GSM83012", "GSM83022", "GSM83026", "GSM83032", "GSM83000", "GSM83001", "GSM83005", "GSM83013", "GSM83035", "GSM83002", "GSM83009", "GSM83029", "GSM83037", "GSM83041", "GSM82995", "GSM82996", "GSM82997", "GSM82998", "GSM82999", "GSM83015", "GSM83016", "GSM83027", "GSM83030", "GSM83042", "GSM83006", "GSM83028", "GSM83033", "GSM83036", "GSM83044", "GSM82994", "GSM83004", "GSM83007", "GSM83008", "GSM83010" ], "type": "other", "id": "GDS1490_1" }, { "dataset_id": "GDS1490", "description": "neural", "sample_id": [ "GSM82929", "GSM82932", "GSM82980", "GSM82981", "GSM82909", "GSM82910", "GSM82955", "GSM82956", "GSM82894", "GSM82896", "GSM82914", "GSM82916", "GSM82962", "GSM82964", "GSM82965", "GSM82895", "GSM82915", "GSM82918", "GSM82963", "GSM82967", "GSM82939", "GSM82940", "GSM82974", "GSM82975", "GSM82945", "GSM82946", "GSM82992", "GSM82993", "GSM82941", "GSM82944", "GSM82988", "GSM82989", "GSM82913", "GSM82917", "GSM82961", "GSM82966", "GSM82899", "GSM82900", "GSM82923", "GSM82924", "GSM82903", "GSM82904", "GSM82951", "GSM82952", "GSM82905", "GSM82906", "GSM82953", "GSM82954", "GSM82933", "GSM82934", "GSM82982", "GSM82983", "GSM82927", "GSM82928", "GSM82976", "GSM82977", "GSM82921", "GSM82922", "GSM82972", "GSM82973", "GSM82897", "GSM82898", "GSM82968", "GSM82969", "GSM82937", "GSM82938", "GSM82986", "GSM82987", "GSM82911", "GSM82912", "GSM82957", "GSM82958", "GSM82901", "GSM82902", "GSM82925", "GSM82926", "GSM82907", "GSM82908", "GSM82959", "GSM82960", "GSM82919", "GSM82920", "GSM82970", "GSM82971", "GSM82947", "GSM82948", "GSM82949", "GSM82950", "GSM82942", "GSM82943", "GSM82990", "GSM82991", "GSM82930", "GSM82931", "GSM82978", "GSM82979", "GSM82935", "GSM82936", "GSM82984", "GSM82985" ], "type": "other", "id": "GDS1490_2" }, { "dataset_id": "GDS1490", "description": "A/J", "sample_id": [ "GSM82994", "GSM82998", "GSM83005", "GSM83006", "GSM83009", "GSM83011", "GSM83015", "GSM83017", "GSM83019", "GSM83021" ], "type": "strain", "id": "GDS1490_3" }, { "dataset_id": "GDS1490", "description": "C3H/HeJ", "sample_id": [ "GSM82996", "GSM83000", "GSM83003", "GSM83010", "GSM83014", "GSM83016", "GSM83018", "GSM83022", "GSM83036", "GSM83037" ], "type": "strain", "id": "GDS1490_4" }, { "dataset_id": "GDS1490", "description": "129S6/SvEvTac", "sample_id": [ "GSM82903", "GSM82904", "GSM82905", "GSM82906", "GSM82907", "GSM82908", "GSM82909", "GSM82910", "GSM82911", "GSM82912", "GSM82913", "GSM82914", "GSM82915", "GSM82916", "GSM82917", "GSM82918", "GSM82919", "GSM82920", "GSM82921", "GSM82922", "GSM82923", "GSM82924", "GSM82925", "GSM82926", "GSM82927", "GSM82928", "GSM82929", "GSM82930", "GSM82931", "GSM82932", "GSM82933", "GSM82934", "GSM82935", "GSM82936", "GSM82937", "GSM82938", "GSM82939", "GSM82940", "GSM82941", "GSM82942", "GSM82943", "GSM82944", "GSM82945", "GSM82946", "GSM82999", "GSM83001", "GSM83002", "GSM83007", "GSM83024", "GSM83025", "GSM83026", "GSM83027", "GSM83028", "GSM83038" ], "type": "strain", "id": "GDS1490_5" }, { "dataset_id": "GDS1490", "description": "C57BL/6J", "sample_id": [ "GSM82947", "GSM82948", "GSM82949", "GSM82950", "GSM82961", "GSM82962", "GSM82963", "GSM82964", "GSM82965", "GSM82966", "GSM82967", "GSM82970", "GSM82971", "GSM82972", "GSM82973", "GSM82974", "GSM82975", "GSM82976", "GSM82977", "GSM82978", "GSM82979", "GSM82980", "GSM82981", "GSM82982", "GSM82983", "GSM82984", "GSM82985", "GSM82986", "GSM82987", "GSM82988", "GSM82989", "GSM82990", "GSM82991", "GSM82992", "GSM82993", "GSM82997", "GSM83004", "GSM83029", "GSM83030", "GSM83031", "GSM83032", "GSM83033", "GSM83034", "GSM83035", "GSM83039", "GSM82951", "GSM82952", "GSM82953", "GSM82954", "GSM82955", "GSM82956", "GSM82957", "GSM82958", "GSM82959", "GSM82960", "GSM82968", "GSM82969" ], "type": "strain", "id": "GDS1490_6" }, { "dataset_id": "GDS1490", "description": "DBA/2J", "sample_id": [ "GSM82894", "GSM82895", "GSM82896", "GSM82897", "GSM82898", "GSM82899", "GSM82900", "GSM82901", "GSM82902", "GSM82995", "GSM83008", "GSM83012", "GSM83013", "GSM83020", "GSM83023", "GSM83040", "GSM83041", "GSM83042", "GSM83044" ], "type": "strain", "id": "GDS1490_7" }, { "dataset_id": "GDS1490", "description": "amygdala", "sample_id": [ "GSM82929", "GSM82932", "GSM82980", "GSM82981" ], "type": "tissue", "id": "GDS1490_8" }, { "dataset_id": "GDS1490", "description": "bed nucleus stria terminalis", "sample_id": [ "GSM82909", "GSM82910", "GSM82955", "GSM82956" ], "type": "tissue", "id": "GDS1490_9" }, { "dataset_id": "GDS1490", "description": "hippocampus CA1", "sample_id": [ "GSM82894", "GSM82896", "GSM82914", "GSM82916", "GSM82962", "GSM82964", "GSM82965" ], "type": "tissue", "id": "GDS1490_10" }, { "dataset_id": "GDS1490", "description": "hippocampus CA3", "sample_id": [ "GSM82895", "GSM82915", "GSM82918", "GSM82963", "GSM82967" ], "type": "tissue", "id": "GDS1490_11" }, { "dataset_id": "GDS1490", "description": "cerebellum", "sample_id": [ "GSM82939", "GSM82940", "GSM82974", "GSM82975" ], "type": "tissue", "id": "GDS1490_12" }, { "dataset_id": "GDS1490", "description": "choroid plexus fourth ventricle", "sample_id": [ "GSM82945", "GSM82946", "GSM82992", "GSM82993" ], "type": "tissue", "id": "GDS1490_13" }, { "dataset_id": "GDS1490", "description": "cerebral cortex", "sample_id": [ "GSM82941", "GSM82944", "GSM82988", "GSM82989" ], "type": "tissue", "id": "GDS1490_14" }, { "dataset_id": "GDS1490", "description": "dentate gyrus", "sample_id": [ "GSM82913", "GSM82917", "GSM82961", "GSM82966" ], "type": "tissue", "id": "GDS1490_15" }, { "dataset_id": "GDS1490", "description": "entorhinal cortex", "sample_id": [ "GSM82899", "GSM82900", "GSM82923", "GSM82924" ], "type": "tissue", "id": "GDS1490_16" }, { "dataset_id": "GDS1490", "description": "hippocampal formation", "sample_id": [ "GSM82903", "GSM82904", "GSM82951", "GSM82952" ], "type": "tissue", "id": "GDS1490_17" }, { "dataset_id": "GDS1490", "description": "hypothalamus", "sample_id": [ "GSM82905", "GSM82906", "GSM82953", "GSM82954" ], "type": "tissue", "id": "GDS1490_18" }, { "dataset_id": "GDS1490", "description": "inferior colliculus", "sample_id": [ "GSM82933", "GSM82934", "GSM82982", "GSM82983" ], "type": "tissue", "id": "GDS1490_19" }, { "dataset_id": "GDS1490", "description": "midbrain and diencephalon", "sample_id": [ "GSM82927", "GSM82928", "GSM82976", "GSM82977" ], "type": "tissue", "id": "GDS1490_20" }, { "dataset_id": "GDS1490", "description": "medulla oblongata", "sample_id": [ "GSM82921", "GSM82922", "GSM82972", "GSM82973" ], "type": "tissue", "id": "GDS1490_21" }, { "dataset_id": "GDS1490", "description": "motor cortex", "sample_id": [ "GSM82897", "GSM82898", "GSM82968", "GSM82969" ], "type": "tissue", "id": "GDS1490_22" }, { "dataset_id": "GDS1490", "description": "olfactory bulbs", "sample_id": [ "GSM82937", "GSM82938", "GSM82986", "GSM82987" ], "type": "tissue", "id": "GDS1490_23" }, { "dataset_id": "GDS1490", "description": "periaqueductal gray", "sample_id": [ "GSM82911", "GSM82912", "GSM82957", "GSM82958" ], "type": "tissue", "id": "GDS1490_24" }, { "dataset_id": "GDS1490", "description": "perirhinal cortex", "sample_id": [ "GSM82901", "GSM82902", "GSM82925", "GSM82926" ], "type": "tissue", "id": "GDS1490_25" }, { "dataset_id": "GDS1490", "description": "pituitary", "sample_id": [ "GSM82907", "GSM82908", "GSM82959", "GSM82960" ], "type": "tissue", "id": "GDS1490_26" }, { "dataset_id": "GDS1490", "description": "pons", "sample_id": [ "GSM82919", "GSM82920", "GSM82970", "GSM82971" ], "type": "tissue", "id": "GDS1490_27" }, { "dataset_id": "GDS1490", "description": "retina", "sample_id": [ "GSM82947", "GSM82948", "GSM82949", "GSM82950" ], "type": "tissue", "id": "GDS1490_28" }, { "dataset_id": "GDS1490", "description": "spinal cord", "sample_id": [ "GSM82942", "GSM82943", "GSM82990", "GSM82991" ], "type": "tissue", "id": "GDS1490_29" }, { "dataset_id": "GDS1490", "description": "striatum", "sample_id": [ "GSM82930", "GSM82931", "GSM82978", "GSM82979" ], "type": "tissue", "id": "GDS1490_30" }, { "dataset_id": "GDS1490", "description": "superior colliculus", "sample_id": [ "GSM82935", "GSM82936", "GSM82984", "GSM82985" ], "type": "tissue", "id": "GDS1490_31" }, { "dataset_id": "GDS1490", "description": "adrenal", "sample_id": [ "GSM83018", "GSM83019", "GSM83020", "GSM83038", "GSM83039" ], "type": "tissue", "id": "GDS1490_32" }, { "dataset_id": "GDS1490", "description": "brown adipose tissue", "sample_id": [ "GSM83003", "GSM83021", "GSM83023", "GSM83024", "GSM83031" ], "type": "tissue", "id": "GDS1490_33" }, { "dataset_id": "GDS1490", "description": "heart", "sample_id": [ "GSM83014", "GSM83017", "GSM83025", "GSM83034", "GSM83040" ], "type": "tissue", "id": "GDS1490_34" }, { "dataset_id": "GDS1490", "description": "kidney", "sample_id": [ "GSM83011", "GSM83012", "GSM83022", "GSM83026", "GSM83032" ], "type": "tissue", "id": "GDS1490_35" }, { "dataset_id": "GDS1490", "description": "liver", "sample_id": [ "GSM83000", "GSM83001", "GSM83005", "GSM83013", "GSM83035" ], "type": "tissue", "id": "GDS1490_36" }, { "dataset_id": "GDS1490", "description": "skeletal muscle", "sample_id": [ "GSM83002", "GSM83009", "GSM83029", "GSM83037", "GSM83041" ], "type": "tissue", "id": "GDS1490_37" }, { "dataset_id": "GDS1490", "description": "spleen", "sample_id": [ "GSM82995", "GSM82996", "GSM82997", "GSM82998", "GSM82999" ], "type": "tissue", "id": "GDS1490_38" }, { "dataset_id": "GDS1490", "description": "testes", "sample_id": [ "GSM83015", "GSM83016", "GSM83027", "GSM83030", "GSM83042" ], "type": "tissue", "id": "GDS1490_39" }, { "dataset_id": "GDS1490", "description": "thymus", "sample_id": [ "GSM83006", "GSM83028", "GSM83033", "GSM83036", "GSM83044" ], "type": "tissue", "id": "GDS1490_40" }, { "dataset_id": "GDS1490", "description": "white adipose tissue", "sample_id": [ "GSM82994", "GSM83004", "GSM83007", "GSM83008", "GSM83010" ], "type": "tissue", "id": "GDS1490_41" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1490", "version": 1.0, "instances": "150", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1490.tab", "compression": "gz" } ], [ [ "GDS1491.tab" ], { "title": "Calcineurin overexpression effect on astrocytes", "description": "Analysis of primary hippocampal culture cells overexpressing an activated form of calcineurin that lacks part of its C terminus and an autoinhibitory domain. The hippocampal cultures contain neurons and astroglia. Results provide insight into the role of calcineurin in astrocyte activation.", "type": "Expression profiling by array", "pubmed_id": "15872113", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE1978", "order": "none", "update_date": "May 08 2006", "subsets": [ { "dataset_id": "GDS1491", "description": "control", "sample_id": [ "GSM35384", "GSM35385", "GSM35386", "GSM35387", "GSM35388", "GSM35389", "GSM35390" ], "type": "agent", "id": "GDS1491_1" }, { "dataset_id": "GDS1491", "description": "lacZ", "sample_id": [ "GSM35377", "GSM35378", "GSM35379", "GSM35380", "GSM35381", "GSM35382", "GSM35383" ], "type": "agent", "id": "GDS1491_2" }, { "dataset_id": "GDS1491", "description": "activated calcineurin", "sample_id": [ "GSM35368", "GSM35369", "GSM35370", "GSM35371", "GSM35372", "GSM35373", "GSM35374", "GSM35375", "GSM35376" ], "type": "agent", "id": "GDS1491_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1491", "version": 1.0, "instances": "23", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1491.tab", "compression": "gz" } ], [ [ "GDS1492.tab" ], { "title": "Bleomycin effect on lungs: dose response and time course", "description": "Comparison of lungs from C57BL/6J and C3H/HeJ strains, 3 and 6 weeks after treatment with 80, 100, or 125 units of bleomycin/kg. C57BL/6Js are susceptible to bleomycin-induced pulmonary fibrosis, while C3H/HeJs are resistant. Results identify candidate genes underlying fibrosis susceptibility.", "type": "Expression profiling by array", "pubmed_id": "15937080", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE2640", "order": "none", "update_date": "Oct 06 2006", "subsets": [ { "dataset_id": "GDS1492", "description": "A/J", "sample_id": [ "GSM50711", "GSM50709", "GSM50710", "GSM50712", "GSM50714", "GSM50708", "GSM50713", "GSM50707" ], "type": "strain", "id": "GDS1492_1" }, { "dataset_id": "GDS1492", "description": "C3H/HeJ", "sample_id": [ "GSM50722", "GSM50723", "GSM50725", "GSM50726", "GSM50727", "GSM50724" ], "type": "strain", "id": "GDS1492_2" }, { "dataset_id": "GDS1492", "description": "C57BL/6", "sample_id": [ "GSM50715", "GSM50716", "GSM50719", "GSM50720", "GSM50718", "GSM50721", "GSM50717" ], "type": "strain", "id": "GDS1492_3" }, { "dataset_id": "GDS1492", "description": "resistant", "sample_id": [ "GSM50711", "GSM50709", "GSM50710", "GSM50712", "GSM50714", "GSM50708", "GSM50713", "GSM50707", "GSM50722", "GSM50723", "GSM50725", "GSM50726", "GSM50727", "GSM50724" ], "type": "other", "id": "GDS1492_4" }, { "dataset_id": "GDS1492", "description": "susceptible", "sample_id": [ "GSM50715", "GSM50716", "GSM50719", "GSM50720", "GSM50718", "GSM50721", "GSM50717" ], "type": "other", "id": "GDS1492_5" }, { "dataset_id": "GDS1492", "description": "female", "sample_id": [ "GSM50711", "GSM50712", "GSM50714", "GSM50713", "GSM50725", "GSM50726", "GSM50727", "GSM50719", "GSM50720", "GSM50718", "GSM50721" ], "type": "gender", "id": "GDS1492_6" }, { "dataset_id": "GDS1492", "description": "male", "sample_id": [ "GSM50709", "GSM50710", "GSM50708", "GSM50707", "GSM50722", "GSM50723", "GSM50724", "GSM50715", "GSM50716", "GSM50717" ], "type": "gender", "id": "GDS1492_7" }, { "dataset_id": "GDS1492", "description": "untreated", "sample_id": [ "GSM50713", "GSM50727", "GSM50721", "GSM50707", "GSM50724", "GSM50717" ], "type": "agent", "id": "GDS1492_8" }, { "dataset_id": "GDS1492", "description": "bleomycin", "sample_id": [ "GSM50711", "GSM50712", "GSM50714", "GSM50725", "GSM50726", "GSM50719", "GSM50720", "GSM50718", "GSM50709", "GSM50710", "GSM50708", "GSM50722", "GSM50723", "GSM50715", "GSM50716" ], "type": "agent", "id": "GDS1492_9" }, { "dataset_id": "GDS1492", "description": "control", "sample_id": [ "GSM50713", "GSM50727", "GSM50721", "GSM50707", "GSM50724", "GSM50717" ], "type": "dose", "id": "GDS1492_10" }, { "dataset_id": "GDS1492", "description": "80 units/kg", "sample_id": [ "GSM50708" ], "type": "dose", "id": "GDS1492_11" }, { "dataset_id": "GDS1492", "description": "100 units/kg", "sample_id": [ "GSM50711", "GSM50709", "GSM50710", "GSM50722", "GSM50723", "GSM50715", "GSM50716" ], "type": "dose", "id": "GDS1492_12" }, { "dataset_id": "GDS1492", "description": "125 units/kg", "sample_id": [ "GSM50712", "GSM50714", "GSM50725", "GSM50726", "GSM50719", "GSM50720", "GSM50718" ], "type": "dose", "id": "GDS1492_13" }, { "dataset_id": "GDS1492", "description": "3 weeks", "sample_id": [ "GSM50711", "GSM50709", "GSM50722", "GSM50715", "GSM50712", "GSM50725", "GSM50719", "GSM50708" ], "type": "time", "id": "GDS1492_14" }, { "dataset_id": "GDS1492", "description": "6 weeks", "sample_id": [ "GSM50710", "GSM50723", "GSM50714", "GSM50726", "GSM50720", "GSM50713", "GSM50727", "GSM50721", "GSM50707", "GSM50724", "GSM50717" ], "type": "time", "id": "GDS1492_15" }, { "dataset_id": "GDS1492", "description": "when moribund", "sample_id": [ "GSM50716", "GSM50718" ], "type": "time", "id": "GDS1492_16" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1492", "version": 1.0, "instances": "21", "variables": 13883, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1492.tab", "compression": "gz" } ], [ [ "GDS1494.tab" ], { "title": "RyhB small regulatory RNA effect on global iron use", "description": "Analysis of derivatives of strain MG1655: wild-type, fur mutant, and wild-type with added FeSO4, induced to overexpress RyhB. RyhB is a noncoding RNA regulated by the Fur repressor protein. Results suggest that RyhB plays a major role in the regulation of iron metabolism.", "type": "Expression profiling by array", "pubmed_id": "16199566", "platform": "GPL199", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7312", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3105", "order": "none", "update_date": "Oct 06 2006", "subsets": [ { "dataset_id": "GDS1494", "description": "wild type", "sample_id": [ "GSM67647", "GSM67648", "GSM67651", "GSM67652", "GSM67659", "GSM67660", "GSM67663", "GSM67665" ], "type": "genotype/variation", "id": "GDS1494_1" }, { "dataset_id": "GDS1494", "description": "fur mutant", "sample_id": [ "GSM67655", "GSM67656", "GSM67657", "GSM67658" ], "type": "genotype/variation", "id": "GDS1494_2" }, { "dataset_id": "GDS1494", "description": "RyhB", "sample_id": [ "GSM67647", "GSM67648", "GSM67655", "GSM67656", "GSM67659", "GSM67660" ], "type": "agent", "id": "GDS1494_3" }, { "dataset_id": "GDS1494", "description": "control", "sample_id": [ "GSM67651", "GSM67652", "GSM67657", "GSM67658", "GSM67663", "GSM67665" ], "type": "agent", "id": "GDS1494_4" }, { "dataset_id": "GDS1494", "description": "0uM FeSO4", "sample_id": [ "GSM67647", "GSM67648", "GSM67651", "GSM67652", "GSM67655", "GSM67656", "GSM67657", "GSM67658" ], "type": "growth protocol", "id": "GDS1494_5" }, { "dataset_id": "GDS1494", "description": "50uM FeSO4", "sample_id": [ "GSM67659", "GSM67660", "GSM67663", "GSM67665" ], "type": "growth protocol", "id": "GDS1494_6" } ], "taxid": "562", "genes": 7103, "aggregation_function": "mean", "name": "GDS1494", "version": 1.0, "instances": "12", "variables": 7107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1494.tab", "compression": "gz" } ], [ [ "GDS1495.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95B)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 9 male and 10 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1495", "description": "lean", "sample_id": [ "GSM47347", "GSM47348", "GSM47349", "GSM47350", "GSM47351", "GSM47352", "GSM47353", "GSM47354", "GSM47355", "GSM47356", "GSM47357", "GSM47358", "GSM47359", "GSM47360", "GSM47361", "GSM47362", "GSM47363", "GSM47364", "GSM47365", "GSM47366" ], "type": "disease state", "id": "GDS1495_1" }, { "dataset_id": "GDS1495", "description": "obese", "sample_id": [ "GSM47367", "GSM47368", "GSM47369", "GSM47370", "GSM47371", "GSM47372", "GSM47373", "GSM47374", "GSM47375", "GSM47376", "GSM47377", "GSM47378", "GSM47379", "GSM47380", "GSM47381", "GSM47382", "GSM47383", "GSM47384", "GSM47385" ], "type": "disease state", "id": "GDS1495_2" }, { "dataset_id": "GDS1495", "description": "male", "sample_id": [ "GSM47357", "GSM47358", "GSM47359", "GSM47360", "GSM47361", "GSM47362", "GSM47363", "GSM47364", "GSM47365", "GSM47366", "GSM47377", "GSM47378", "GSM47379", "GSM47380", "GSM47381", "GSM47382", "GSM47383", "GSM47384", "GSM47385" ], "type": "gender", "id": "GDS1495_3" }, { "dataset_id": "GDS1495", "description": "female", "sample_id": [ "GSM47347", "GSM47348", "GSM47349", "GSM47350", "GSM47351", "GSM47352", "GSM47353", "GSM47354", "GSM47355", "GSM47356", "GSM47367", "GSM47368", "GSM47369", "GSM47370", "GSM47371", "GSM47372", "GSM47373", "GSM47374", "GSM47375", "GSM47376" ], "type": "gender", "id": "GDS1495_4" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS1495", "version": 1.0, "instances": "39", "variables": 10312, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1495.tab", "compression": "gz" } ], [ [ "GDS1496.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95C)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 9 male and 10 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS1496", "description": "lean", "sample_id": [ "GSM47386", "GSM47387", "GSM47388", "GSM47389", "GSM47390", "GSM47391", "GSM47392", "GSM47393", "GSM47394", "GSM47395", "GSM47396", "GSM47397", "GSM47398", "GSM47399", "GSM47400", "GSM47401", "GSM47402", "GSM47403", "GSM47404", "GSM47405" ], "type": "disease state", "id": "GDS1496_1" }, { "dataset_id": "GDS1496", "description": "obese", "sample_id": [ "GSM47406", "GSM47407", "GSM47408", "GSM47409", "GSM47410", "GSM47411", "GSM47412", "GSM47413", "GSM47414", "GSM47415", "GSM47416", "GSM47417", "GSM47418", "GSM47419", "GSM47420", "GSM47421", "GSM47422", "GSM47423", "GSM47424" ], "type": "disease state", "id": "GDS1496_2" }, { "dataset_id": "GDS1496", "description": "male", "sample_id": [ "GSM47396", "GSM47397", "GSM47398", "GSM47399", "GSM47400", "GSM47401", "GSM47402", "GSM47403", "GSM47404", "GSM47405", "GSM47416", "GSM47417", "GSM47418", "GSM47419", "GSM47420", "GSM47421", "GSM47422", "GSM47423", "GSM47424" ], "type": "gender", "id": "GDS1496_3" }, { "dataset_id": "GDS1496", "description": "female", "sample_id": [ "GSM47386", "GSM47387", "GSM47388", "GSM47389", "GSM47390", "GSM47391", "GSM47392", "GSM47393", "GSM47394", "GSM47395", "GSM47406", "GSM47407", "GSM47408", "GSM47409", "GSM47410", "GSM47411", "GSM47412", "GSM47413", "GSM47414", "GSM47415" ], "type": "gender", "id": "GDS1496_4" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS1496", "version": 1.0, "instances": "39", "variables": 10625, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1496.tab", "compression": "gz" } ], [ [ "GDS1497.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95D)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 9 male and 10 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL94", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12644", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1497", "description": "lean", "sample_id": [ "GSM47561", "GSM47562", "GSM47563", "GSM47564", "GSM47565", "GSM47566", "GSM47567", "GSM47568", "GSM47569", "GSM47570", "GSM47571", "GSM47572", "GSM47573", "GSM47574", "GSM47575", "GSM47576", "GSM47577", "GSM47578", "GSM47579", "GSM47580" ], "type": "disease state", "id": "GDS1497_1" }, { "dataset_id": "GDS1497", "description": "obese", "sample_id": [ "GSM47581", "GSM47582", "GSM47583", "GSM47584", "GSM47585", "GSM47586", "GSM47587", "GSM47588", "GSM47589", "GSM47590", "GSM47591", "GSM47592", "GSM47593", "GSM47594", "GSM47595", "GSM47596", "GSM47597", "GSM47598", "GSM47599" ], "type": "disease state", "id": "GDS1497_2" }, { "dataset_id": "GDS1497", "description": "male", "sample_id": [ "GSM47571", "GSM47572", "GSM47573", "GSM47574", "GSM47575", "GSM47576", "GSM47577", "GSM47578", "GSM47579", "GSM47580", "GSM47591", "GSM47592", "GSM47593", "GSM47594", "GSM47595", "GSM47596", "GSM47597", "GSM47598", "GSM47599" ], "type": "gender", "id": "GDS1497_3" }, { "dataset_id": "GDS1497", "description": "female", "sample_id": [ "GSM47561", "GSM47562", "GSM47563", "GSM47564", "GSM47565", "GSM47566", "GSM47567", "GSM47568", "GSM47569", "GSM47570", "GSM47581", "GSM47582", "GSM47583", "GSM47584", "GSM47585", "GSM47586", "GSM47587", "GSM47588", "GSM47589", "GSM47590" ], "type": "gender", "id": "GDS1497_4" } ], "taxid": "9606", "genes": 11408, "aggregation_function": "mean", "name": "GDS1497", "version": 1.0, "instances": "39", "variables": 11411, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1497.tab", "compression": "gz" } ], [ [ "GDS1498.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95E)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 9 male and 10 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL95", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12639", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1498", "description": "lean", "sample_id": [ "GSM47823", "GSM47824", "GSM47825", "GSM47826", "GSM47827", "GSM47828", "GSM47829", "GSM47830", "GSM47831", "GSM47832", "GSM47833", "GSM47834", "GSM47835", "GSM47836", "GSM47837", "GSM47838", "GSM47839", "GSM47840", "GSM47841", "GSM47842" ], "type": "disease state", "id": "GDS1498_1" }, { "dataset_id": "GDS1498", "description": "obese", "sample_id": [ "GSM47843", "GSM47844", "GSM47845", "GSM47846", "GSM47847", "GSM47848", "GSM47849", "GSM47850", "GSM47851", "GSM47852", "GSM47853", "GSM47854", "GSM47855", "GSM47856", "GSM47857", "GSM47858", "GSM47859", "GSM47860", "GSM47861" ], "type": "disease state", "id": "GDS1498_2" }, { "dataset_id": "GDS1498", "description": "male", "sample_id": [ "GSM47833", "GSM47834", "GSM47835", "GSM47836", "GSM47837", "GSM47838", "GSM47839", "GSM47840", "GSM47841", "GSM47842", "GSM47853", "GSM47854", "GSM47855", "GSM47856", "GSM47857", "GSM47858", "GSM47859", "GSM47860", "GSM47861" ], "type": "gender", "id": "GDS1498_3" }, { "dataset_id": "GDS1498", "description": "female", "sample_id": [ "GSM47823", "GSM47824", "GSM47825", "GSM47826", "GSM47827", "GSM47828", "GSM47829", "GSM47830", "GSM47831", "GSM47832", "GSM47843", "GSM47844", "GSM47845", "GSM47846", "GSM47847", "GSM47848", "GSM47849", "GSM47850", "GSM47851", "GSM47852" ], "type": "gender", "id": "GDS1498_4" } ], "taxid": "9606", "genes": 10350, "aggregation_function": "mean", "name": "GDS1498", "version": 1.0, "instances": "39", "variables": 10353, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1498.tab", "compression": "gz" } ], [ [ "GDS1499.tab" ], { "title": "Hepatocyte nuclear factor 1beta mutant overexpression effect on embryonic kidney cells", "description": "Analysis of HEK293 embryonic kidney cells overexpressing wild type hepatocyte nuclear factor (HNF) 1beta or HNF1alpha, or the HNF1beta A263insGG mutant. Results identify gene targets of HNF1 beta, and provide insight into the functional differences between HNF1beta and HNF1alpha.", "type": "Expression profiling by array", "pubmed_id": "16297991", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3308", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1499", "description": "uninduced control", "sample_id": [ "GSM74421", "GSM74423", "GSM74425", "GSM74427", "GSM74429", "GSM74431" ], "type": "protocol", "id": "GDS1499_1" }, { "dataset_id": "GDS1499", "description": "overexpression", "sample_id": [ "GSM74420", "GSM74422", "GSM74424", "GSM74426", "GSM74428", "GSM74430" ], "type": "protocol", "id": "GDS1499_2" }, { "dataset_id": "GDS1499", "description": "wild type HNF1alpha", "sample_id": [ "GSM74424", "GSM74426", "GSM74425", "GSM74427" ], "type": "genotype/variation", "id": "GDS1499_3" }, { "dataset_id": "GDS1499", "description": "wild type HNF1beta", "sample_id": [ "GSM74428", "GSM74430", "GSM74429", "GSM74431" ], "type": "genotype/variation", "id": "GDS1499_4" }, { "dataset_id": "GDS1499", "description": "HNF1beta A263insGG mutant", "sample_id": [ "GSM74420", "GSM74422", "GSM74421", "GSM74423" ], "type": "genotype/variation", "id": "GDS1499_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1499", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1499.tab", "compression": "gz" } ], [ [ "GDS15.tab" ], { "title": "Heat shock from various temperatures to 37\u00b0C", "description": "Samples collected 20 min after temperature shift from either 17\u00b0C, 21\u00b0C, 25\u00b0C, 29\u00b0C or 33\u00b0C to 37\u00b0C. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL51", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS15", "description": "17\u00b0C", "sample_id": [ "GSM883" ], "type": "temperature", "id": "GDS15_1" }, { "dataset_id": "GDS15", "description": "21\u00b0C", "sample_id": [ "GSM930" ], "type": "temperature", "id": "GDS15_2" }, { "dataset_id": "GDS15", "description": "25\u00b0C", "sample_id": [ "GSM929" ], "type": "temperature", "id": "GDS15_3" }, { "dataset_id": "GDS15", "description": "29\u00b0C", "sample_id": [ "GSM928" ], "type": "temperature", "id": "GDS15_4" }, { "dataset_id": "GDS15", "description": "33\u00b0C", "sample_id": [ "GSM926" ], "type": "temperature", "id": "GDS15_5" }, { "dataset_id": "GDS15", "description": "37\u00b0C", "sample_id": [ "GSM925" ], "type": "temperature", "id": "GDS15_6" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS15", "version": 1.0, "instances": "6", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS15.tab", "compression": "gz" } ], [ [ "GDS1500.tab" ], { "title": "Mechanical stress effect on fibroblasts from various fetal tissues (MG-430A)", "description": "Expression profiling of fetal fibroblasts from tendon, skin, and cornea following mechanical stimulation by fluid flow. Fibroblasts isolated from embryos at 19 days post conception. Results provide insight into differences among fibroblasts from different tissues and response to linear shear stress.", "type": "Expression profiling by array", "pubmed_id": "16492137", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE3486", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1500", "description": "corneal fibroblast", "sample_id": [ "GSM78988", "GSM78989", "GSM78990", "GSM78991", "GSM78992", "GSM78993" ], "type": "cell line", "id": "GDS1500_1" }, { "dataset_id": "GDS1500", "description": "skin fibroblast", "sample_id": [ "GSM78994", "GSM78995", "GSM78996", "GSM78997", "GSM78998", "GSM78999" ], "type": "cell line", "id": "GDS1500_2" }, { "dataset_id": "GDS1500", "description": "tendon fibroblast", "sample_id": [ "GSM79000", "GSM79001", "GSM79002", "GSM79003", "GSM79004", "GSM79005" ], "type": "cell line", "id": "GDS1500_3" }, { "dataset_id": "GDS1500", "description": "control", "sample_id": [ "GSM78988", "GSM78989", "GSM78990", "GSM78994", "GSM78995", "GSM78996", "GSM79000", "GSM79001", "GSM79002" ], "type": "stress", "id": "GDS1500_4" }, { "dataset_id": "GDS1500", "description": "stimulated", "sample_id": [ "GSM78991", "GSM78992", "GSM78993", "GSM78997", "GSM78998", "GSM78999", "GSM79003", "GSM79004", "GSM79005" ], "type": "stress", "id": "GDS1500_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1500", "version": 1.0, "instances": "18", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1500.tab", "compression": "gz" } ], [ [ "GDS1501.tab" ], { "title": "Mechanical stimulation effect on fibroblasts from various fetal tissues (MG-430B)", "description": "Expression profiling of fetal fibroblasts from tendon, skin, and cornea following mechanical stimulation by fluid flow. Fibroblasts isolated from embryos at 19 days post conception. Results provide insight into differences among fibroblasts from different tissues and response to linear shear stress.", "type": "Expression profiling by array", "pubmed_id": "16492137", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE3486", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1501", "description": "corneal fibroblast", "sample_id": [ "GSM79006", "GSM79007", "GSM79008", "GSM79009", "GSM79010", "GSM79011" ], "type": "cell line", "id": "GDS1501_1" }, { "dataset_id": "GDS1501", "description": "skin fibroblast", "sample_id": [ "GSM79012", "GSM79013", "GSM79014", "GSM79015", "GSM79016", "GSM79017" ], "type": "cell line", "id": "GDS1501_2" }, { "dataset_id": "GDS1501", "description": "tendon fibroblast", "sample_id": [ "GSM79018", "GSM79019", "GSM79020", "GSM79021", "GSM79022", "GSM79023" ], "type": "cell line", "id": "GDS1501_3" }, { "dataset_id": "GDS1501", "description": "control", "sample_id": [ "GSM79006", "GSM79007", "GSM79008", "GSM79012", "GSM79013", "GSM79014", "GSM79018", "GSM79019", "GSM79020" ], "type": "stress", "id": "GDS1501_4" }, { "dataset_id": "GDS1501", "description": "stimulated", "sample_id": [ "GSM79009", "GSM79010", "GSM79011", "GSM79015", "GSM79016", "GSM79017", "GSM79021", "GSM79022", "GSM79023" ], "type": "stress", "id": "GDS1501_5" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1501", "version": 1.0, "instances": "18", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1501.tab", "compression": "gz" } ], [ [ "GDS1502.tab" ], { "title": "Inducer of CBF expression 1 mutant response to cold stress: time course", "description": "Analysis of inducer of CBF expression 1 (ICE1) mutant seedlings exposed to 0 C for up to 24 hours. Transcription factor ICE1 is required for chilling/freezing tolerance. Results identify a major role for ICE1 in controlling the expression of many cold-responsive genes during cold stress.", "type": "Expression profiling by array", "pubmed_id": "16214899", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3326", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1502", "description": "wildtype", "sample_id": [ "GSM74894", "GSM74895", "GSM74896", "GSM74897", "GSM74898", "GSM74899", "GSM74900", "GSM74901" ], "type": "genotype/variation", "id": "GDS1502_1" }, { "dataset_id": "GDS1502", "description": "ICE1 mutant", "sample_id": [ "GSM74902", "GSM74903", "GSM74904", "GSM74905", "GSM74906", "GSM74907", "GSM74908", "GSM74909" ], "type": "genotype/variation", "id": "GDS1502_2" }, { "dataset_id": "GDS1502", "description": "untreated", "sample_id": [ "GSM74894", "GSM74895", "GSM74902", "GSM74903" ], "type": "protocol", "id": "GDS1502_3" }, { "dataset_id": "GDS1502", "description": "cold-treated", "sample_id": [ "GSM74896", "GSM74897", "GSM74898", "GSM74899", "GSM74900", "GSM74901", "GSM74904", "GSM74905", "GSM74906", "GSM74907", "GSM74908", "GSM74909" ], "type": "protocol", "id": "GDS1502_4" }, { "dataset_id": "GDS1502", "description": "0 h", "sample_id": [ "GSM74894", "GSM74895", "GSM74902", "GSM74903" ], "type": "time", "id": "GDS1502_5" }, { "dataset_id": "GDS1502", "description": "3 h", "sample_id": [ "GSM74896", "GSM74897", "GSM74904", "GSM74905" ], "type": "time", "id": "GDS1502_6" }, { "dataset_id": "GDS1502", "description": "6 h", "sample_id": [ "GSM74898", "GSM74899", "GSM74906", "GSM74907" ], "type": "time", "id": "GDS1502_7" }, { "dataset_id": "GDS1502", "description": "24 h", "sample_id": [ "GSM74900", "GSM74901", "GSM74908", "GSM74909" ], "type": "time", "id": "GDS1502_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1502", "version": 1.0, "instances": "16", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1502.tab", "compression": "gz" } ], [ [ "GDS1503.tab" ], { "title": "Hutchinson-Gilford progeria syndrome: fibroblast (HG-U133A)", "description": "Expression profiling of three fibroblast cell lines derived from Hutchinson-Gilford progeria syndrome (HGPS) patients. Identified changes in gene expression may provide clues to potential risk factors or factors influencing disease progression.", "type": "Expression profiling by array", "pubmed_id": "15268757", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3860", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1503", "description": "normal", "sample_id": [ "GSM88289", "GSM88290", "GSM88291", "GSM88292", "GSM88293", "GSM88294", "GSM88295", "GSM88296", "GSM88297" ], "type": "disease state", "id": "GDS1503_1" }, { "dataset_id": "GDS1503", "description": "HGPS", "sample_id": [ "GSM87553", "GSM87751", "GSM88282", "GSM88283", "GSM88284", "GSM88285", "GSM88286", "GSM88287", "GSM88288" ], "type": "disease state", "id": "GDS1503_2" }, { "dataset_id": "GDS1503", "description": "GM00038C", "sample_id": [ "GSM88289", "GSM88290", "GSM88291" ], "type": "cell line", "id": "GDS1503_3" }, { "dataset_id": "GDS1503", "description": "GM0316B", "sample_id": [ "GSM88292", "GSM88293", "GSM88294" ], "type": "cell line", "id": "GDS1503_4" }, { "dataset_id": "GDS1503", "description": "GMO8398C", "sample_id": [ "GSM88295", "GSM88296", "GSM88297" ], "type": "cell line", "id": "GDS1503_5" }, { "dataset_id": "GDS1503", "description": "AG10750", "sample_id": [ "GSM87553", "GSM87751", "GSM88282" ], "type": "cell line", "id": "GDS1503_6" }, { "dataset_id": "GDS1503", "description": "AG11498", "sample_id": [ "GSM88283", "GSM88284", "GSM88285" ], "type": "cell line", "id": "GDS1503_7" }, { "dataset_id": "GDS1503", "description": "AG11513", "sample_id": [ "GSM88286", "GSM88287", "GSM88288" ], "type": "cell line", "id": "GDS1503_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1503", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1503.tab", "compression": "gz" } ], [ [ "GDS1504.tab" ], { "title": "Hutchinson-Gilford progeria syndrome: fibroblast (HG-U133B)", "description": "Expression profiling of three fibroblast cell lines derived from Hutchinson-Gilford progeria syndrome (HGPS) patients. Identified changes in gene expression may provide clues to potential risk factors or factors influencing disease progression.", "type": "Expression profiling by array", "pubmed_id": "15268757", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3860", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1504", "description": "normal", "sample_id": [ "GSM88307", "GSM88308", "GSM88309", "GSM88310", "GSM88311", "GSM88312", "GSM88313", "GSM88314", "GSM88315" ], "type": "disease state", "id": "GDS1504_1" }, { "dataset_id": "GDS1504", "description": "HGPS", "sample_id": [ "GSM88298", "GSM88299", "GSM88300", "GSM88301", "GSM88302", "GSM88303", "GSM88304", "GSM88305", "GSM88306" ], "type": "disease state", "id": "GDS1504_2" }, { "dataset_id": "GDS1504", "description": "GM00038C", "sample_id": [ "GSM88307", "GSM88308", "GSM88309" ], "type": "cell line", "id": "GDS1504_3" }, { "dataset_id": "GDS1504", "description": "GM0316B", "sample_id": [ "GSM88310", "GSM88311", "GSM88312" ], "type": "cell line", "id": "GDS1504_4" }, { "dataset_id": "GDS1504", "description": "GM08398C", "sample_id": [ "GSM88313", "GSM88314", "GSM88315" ], "type": "cell line", "id": "GDS1504_5" }, { "dataset_id": "GDS1504", "description": "AG10750", "sample_id": [ "GSM88298", "GSM88299", "GSM88300" ], "type": "cell line", "id": "GDS1504_6" }, { "dataset_id": "GDS1504", "description": "AG11498", "sample_id": [ "GSM88301", "GSM88302", "GSM88303" ], "type": "cell line", "id": "GDS1504_7" }, { "dataset_id": "GDS1504", "description": "AG11513", "sample_id": [ "GSM88304", "GSM88305", "GSM88306" ], "type": "cell line", "id": "GDS1504_8" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1504", "version": 1.0, "instances": "18", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1504.tab", "compression": "gz" } ], [ [ "GDS1505.tab" ], { "title": "Cultured skin substitute", "description": "Comparison of cultured skin substitute (CSS), cultured keratinocytes, cultured fibroblasts, and native skin. CSS contains fibroblasts and keratinocytes, and can facilitate wound healing. Results provide insight into physiological and molecular differences between CSS and native skin.", "type": "Expression profiling by array", "pubmed_id": "16354201", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE3204", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1505", "description": "skin", "sample_id": [ "GSM72008", "GSM72009", "GSM72010", "GSM72011" ], "type": "cell type", "id": "GDS1505_1" }, { "dataset_id": "GDS1505", "description": "cultured skin substitute", "sample_id": [ "GSM72012", "GSM72013", "GSM72014", "GSM72015" ], "type": "cell type", "id": "GDS1505_2" }, { "dataset_id": "GDS1505", "description": "cultured fibroblast", "sample_id": [ "GSM72016", "GSM72017", "GSM72018", "GSM72019" ], "type": "cell type", "id": "GDS1505_3" }, { "dataset_id": "GDS1505", "description": "cultured keratinocyte", "sample_id": [ "GSM72020", "GSM72021", "GSM72022", "GSM72023" ], "type": "cell type", "id": "GDS1505_4" }, { "dataset_id": "GDS1505", "description": "633", "sample_id": [ "GSM72008", "GSM72012", "GSM72016", "GSM72020" ], "type": "individual", "id": "GDS1505_5" }, { "dataset_id": "GDS1505", "description": "636", "sample_id": [ "GSM72009" ], "type": "individual", "id": "GDS1505_6" }, { "dataset_id": "GDS1505", "description": "639", "sample_id": [ "GSM72010", "GSM72014", "GSM72018", "GSM72022" ], "type": "individual", "id": "GDS1505_7" }, { "dataset_id": "GDS1505", "description": "634", "sample_id": [ "GSM72013", "GSM72017", "GSM72021" ], "type": "individual", "id": "GDS1505_8" }, { "dataset_id": "GDS1505", "description": "651", "sample_id": [ "GSM72015", "GSM72019", "GSM72023" ], "type": "individual", "id": "GDS1505_9" }, { "dataset_id": "GDS1505", "description": "reference", "sample_id": [ "GSM72011" ], "type": "individual", "id": "GDS1505_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1505", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1505.tab", "compression": "gz" } ], [ [ "GDS1507.tab" ], { "title": "Transcription factor HNF4 null mutation effect on fetal colon", "description": "Analysis of epithelial cells from colon lacking hepatocyte nuclear factor 4 (HNF4) from embryos at E18.5. HNF4 encodes a nuclear hormone receptor transcription factor required for hepatocyte differentiation and liver development. Results provide insight into the role of HNF4 in colon development.", "type": "Expression profiling by array", "pubmed_id": "16618389", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3116", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1507", "description": "control", "sample_id": [ "GSM69705", "GSM69706" ], "type": "genotype/variation", "id": "GDS1507_1" }, { "dataset_id": "GDS1507", "description": "HNF4 null", "sample_id": [ "GSM69701", "GSM69703", "GSM69704" ], "type": "genotype/variation", "id": "GDS1507_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1507", "version": 1.0, "instances": "5", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1507.tab", "compression": "gz" } ], [ [ "GDS1509.tab" ], { "title": "Leptin effect on gallbladder", "description": "Expression profiling of gallbladders from 12 leptin-deficient obese females following daily treatment with 5 ug/g recombinant leptin for 4 weeks. Studies indicate that leptin plays a role in gallbladder motility. Results provide insight into the role of leptin in gallstone disease.", "type": "Expression profiling by array", "pubmed_id": "17463181", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3293", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1509", "description": "control", "sample_id": [ "GSM74081", "GSM74083", "GSM74171", "GSM74189" ], "type": "agent", "id": "GDS1509_1" }, { "dataset_id": "GDS1509", "description": "leptin", "sample_id": [ "GSM74190", "GSM74191", "GSM74192", "GSM74194" ], "type": "agent", "id": "GDS1509_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1509", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1509.tab", "compression": "gz" } ], [ [ "GDS1510.tab" ], { "title": "Tamoxifen effect on normal endometrial epithelium", "description": "Analysis of normal endometrial epithelial cells following treatment with oestrogen or tamoxifen (TMX). Results provide insight into the molecular basis of the association of TMX treatment of breast cancer with an increased incidence of endometrial cancer.", "type": "Expression profiling by array", "pubmed_id": "16355216", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3013", "order": "none", "update_date": "Jun 01 2006", "subsets": [ { "dataset_id": "GDS1510", "description": "control", "sample_id": [ "GSM65288", "GSM65289" ], "type": "agent", "id": "GDS1510_1" }, { "dataset_id": "GDS1510", "description": "oestrogen", "sample_id": [ "GSM65290", "GSM65291" ], "type": "agent", "id": "GDS1510_2" }, { "dataset_id": "GDS1510", "description": "tamoxifen", "sample_id": [ "GSM65292", "GSM65293" ], "type": "agent", "id": "GDS1510_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1510", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1510.tab", "compression": "gz" } ], [ [ "GDS1511.tab" ], { "title": "Transcription factor RUNX1 knockout", "description": "Expression profiling of RUNX1 null mutant embryos at E8.5 and E12. RUNX1 is necessary for normal development of all hematopoietic lineages, and is implicated in acute leukemias.", "type": "Expression profiling by array", "pubmed_id": "18671852", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2592", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1511", "description": "wild type", "sample_id": [ "GSM48917", "GSM48918", "GSM48921", "GSM48922" ], "type": "genotype/variation", "id": "GDS1511_1" }, { "dataset_id": "GDS1511", "description": "RUNX1 knockout", "sample_id": [ "GSM48919", "GSM48920", "GSM48923", "GSM48924" ], "type": "genotype/variation", "id": "GDS1511_2" }, { "dataset_id": "GDS1511", "description": "E8.5", "sample_id": [ "GSM48917", "GSM48918", "GSM48919", "GSM48920" ], "type": "development stage", "id": "GDS1511_3" }, { "dataset_id": "GDS1511", "description": "E12", "sample_id": [ "GSM48921", "GSM48922", "GSM48923", "GSM48924" ], "type": "development stage", "id": "GDS1511_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1511", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1511.tab", "compression": "gz" } ], [ [ "GDS1512.tab" ], { "title": "Embryonal carcinoma cell line response to retinoic acid or trichostatin A", "description": "Analysis of embryonal carcinoma cell line F9 following treatment with all-trans retinoic acid or trichostatin A, a histone deacetylase inhibitor (HDACI). Retinoic acid and HDACIs may be critical regulators of tissue homeostatis and are being tested in clinical trials for a variety of cancers.", "type": "Expression profiling by array", "pubmed_id": [ "15467438", "18959802" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE1437", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1512", "description": "control", "sample_id": [ "GSM24053", "GSM24054", "GSM24055" ], "type": "agent", "id": "GDS1512_1" }, { "dataset_id": "GDS1512", "description": "retinoic acid", "sample_id": [ "GSM24143", "GSM24144", "GSM24145" ], "type": "agent", "id": "GDS1512_2" }, { "dataset_id": "GDS1512", "description": "trichostatin A", "sample_id": [ "GSM24146", "GSM24147", "GSM24148" ], "type": "agent", "id": "GDS1512_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1512", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1512.tab", "compression": "gz" } ], [ [ "GDS1513.tab" ], { "title": "Neonatal brains from X-monosomic females", "description": "Analysis of neonatal brains of X-monosomic females that inherited either a maternal or a paternal X chromosome. X-monosomy is the basis of Turner's syndrome (TS). Expressivity of TS phenotypes depends partly on the parental origin of the single X. This expressivity may be due to imprinted X genes.", "type": "Expression profiling by array", "pubmed_id": "15908953", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1606", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1513", "description": "normal", "sample_id": [ "GSM27455", "GSM27458", "GSM27459", "GSM27460", "GSM27461" ], "type": "genotype/variation", "id": "GDS1513_1" }, { "dataset_id": "GDS1513", "description": "maternal X monosomic", "sample_id": [ "GSM27444", "GSM27445", "GSM27448" ], "type": "genotype/variation", "id": "GDS1513_2" }, { "dataset_id": "GDS1513", "description": "paternal X monosomic", "sample_id": [ "GSM27449", "GSM27450" ], "type": "genotype/variation", "id": "GDS1513_3" }, { "dataset_id": "GDS1513", "description": "C57BL/6J x C3H/Paf", "sample_id": [ "GSM27444", "GSM27445", "GSM27448", "GSM27459", "GSM27460", "GSM27461" ], "type": "protocol", "id": "GDS1513_4" }, { "dataset_id": "GDS1513", "description": "In(X)/C3H x C57BL/6J", "sample_id": [ "GSM27449", "GSM27450", "GSM27455", "GSM27458" ], "type": "protocol", "id": "GDS1513_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1513", "version": 1.0, "instances": "10", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1513.tab", "compression": "gz" } ], [ [ "GDS1514.tab" ], { "title": "Interferon-gamma tolerogenic effect on CD8+ dendritic cells", "description": "Analysis of splenic CD8+ dendritic cells (DCs) rendered tolerogenic by interferon (IFN)-\u03b3, which activates indoleamine 2,3-dioxygenase (IDO) thereby initiating immunosuppression. Results suggest the IDO-dependent tolerogenic program requires tight co-modulation of a very restricted set of genes.", "type": "Expression profiling by array", "pubmed_id": "16339401", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3337", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1514", "description": "untreated", "sample_id": [ "GSM75424", "GSM75425", "GSM75426", "GSM75427" ], "type": "agent", "id": "GDS1514_1" }, { "dataset_id": "GDS1514", "description": "interferon-gamma", "sample_id": [ "GSM75428", "GSM75429", "GSM75430", "GSM75431" ], "type": "agent", "id": "GDS1514_2" }, { "dataset_id": "GDS1514", "description": "4 h", "sample_id": [ "GSM75424", "GSM75425", "GSM75428", "GSM75429" ], "type": "time", "id": "GDS1514_3" }, { "dataset_id": "GDS1514", "description": "16 h", "sample_id": [ "GSM75426", "GSM75427", "GSM75430", "GSM75431" ], "type": "time", "id": "GDS1514_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1514", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1514.tab", "compression": "gz" } ], [ [ "GDS1515.tab" ], { "title": "Lateral root initiation model of auxin-induced cell division: time course", "description": "Analysis of the root of early auxin signaling mutant slr1 treated with auxin species alpha-naphthaleneacetic acid for up to 6 hours. Auxin triggers lateral root initiation (LRI), marked by cell divisions in the pericycle. LRI is absent in slr1. Results provide insight into the early events of LRI.", "type": "Expression profiling by array", "pubmed_id": "16243906", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE3350", "order": "none", "update_date": "Jun 02 2006", "subsets": [ { "dataset_id": "GDS1515", "description": "wildtype", "sample_id": [ "GSM75508", "GSM75509", "GSM75510", "GSM75511", "GSM75512", "GSM75513", "GSM75514", "GSM75515" ], "type": "genotype/variation", "id": "GDS1515_1" }, { "dataset_id": "GDS1515", "description": "slr1 mutant", "sample_id": [ "GSM75516", "GSM75517", "GSM75518", "GSM75519", "GSM75520", "GSM75521" ], "type": "genotype/variation", "id": "GDS1515_2" }, { "dataset_id": "GDS1515", "description": "0 h", "sample_id": [ "GSM75508", "GSM75512", "GSM75516", "GSM75519" ], "type": "time", "id": "GDS1515_3" }, { "dataset_id": "GDS1515", "description": "2 h", "sample_id": [ "GSM75509", "GSM75513", "GSM75517", "GSM75520" ], "type": "time", "id": "GDS1515_4" }, { "dataset_id": "GDS1515", "description": "6 h", "sample_id": [ "GSM75510", "GSM75511", "GSM75514", "GSM75515", "GSM75518", "GSM75521" ], "type": "time", "id": "GDS1515_5" }, { "dataset_id": "GDS1515", "description": "untreated", "sample_id": [ "GSM75511", "GSM75515" ], "type": "agent", "id": "GDS1515_6" }, { "dataset_id": "GDS1515", "description": "alpha-naphthaleneacetic acid", "sample_id": [ "GSM75508", "GSM75509", "GSM75510", "GSM75512", "GSM75513", "GSM75514", "GSM75516", "GSM75517", "GSM75518", "GSM75519", "GSM75520", "GSM75521" ], "type": "agent", "id": "GDS1515_7" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1515", "version": 1.0, "instances": "14", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1515.tab", "compression": "gz" } ], [ [ "GDS1516.tab" ], { "title": "Probiotic Lactobacillus GG soluble factors effect on intestinal epithelial cells", "description": "Analysis of YAMC colonic intestinal epithelial cell line following treatment with Lactobacillus GG (LGG) conditioned media. LGG is a probiotic bacterium used to treat acute and rotavirus diarrhea. Results provide insight into the mechanisms underlying the cytoprotective effect of LGG.", "type": "Expression profiling by array", "pubmed_id": "16306130", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1940", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1516", "description": "untreated", "sample_id": [ "GSM34748", "GSM34749" ], "type": "agent", "id": "GDS1516_1" }, { "dataset_id": "GDS1516", "description": "Lactobacillus GG media", "sample_id": [ "GSM34750", "GSM34751" ], "type": "agent", "id": "GDS1516_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1516", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1516.tab", "compression": "gz" } ], [ [ "GDS1517.tab" ], { "title": "Stearoyl-CoA desaturase 1-deficient mutants on a very low-fat, high-carbohydrate diet: liver expression profile", "description": "Analysis of liver from stearoyl-CoA desaturase 1 (SCD1) deficient mutants maintained on a very low-fat, high-carbohydrate (VLF-HC) diet. SCD1-deficient mutants on VLF-HC develop severe hypercholesterolemia, have reduced high-density lipoprotein cholesterol, and hepatic dysfunction.", "type": "Expression profiling by array", "pubmed_id": "17005996", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3889", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1517", "description": "wild type", "sample_id": [ "GSM88882", "GSM88883", "GSM88884", "GSM88885", "GSM88886", "GSM88887", "GSM88888", "GSM88889", "GSM88890", "GSM88891" ], "type": "genotype/variation", "id": "GDS1517_1" }, { "dataset_id": "GDS1517", "description": "Scd1 null", "sample_id": [ "GSM88872", "GSM88873", "GSM88874", "GSM88875", "GSM88876", "GSM88877", "GSM88878", "GSM88879", "GSM88880", "GSM88881" ], "type": "genotype/variation", "id": "GDS1517_2" }, { "dataset_id": "GDS1517", "description": "control", "sample_id": [ "GSM88877", "GSM88878", "GSM88879", "GSM88880", "GSM88881", "GSM88887", "GSM88888", "GSM88889", "GSM88890", "GSM88891" ], "type": "protocol", "id": "GDS1517_3" }, { "dataset_id": "GDS1517", "description": "low fat, high carbohydrate", "sample_id": [ "GSM88872", "GSM88873", "GSM88874", "GSM88875", "GSM88876", "GSM88882", "GSM88883", "GSM88884", "GSM88885", "GSM88886" ], "type": "protocol", "id": "GDS1517_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1517", "version": 1.0, "instances": "20", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1517.tab", "compression": "gz" } ], [ [ "GDS1518.tab" ], { "title": "Ureteric bud epithelia response to non-branching and branching growth promoting factors", "description": "Analysis of isolated ureteric buds (UBs) cultured in the presence of non-branching growth factor heregulin (HRG) or branching growth factor pleiotrophin (PTN). HRG and PTN purified from BSN cell conditioned medium. Results provide insight into how HRG induces non-branching growth.", "type": "Expression profiling by array", "pubmed_id": "16183643", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3394", "order": "none", "update_date": "Jun 02 2006", "subsets": [ { "dataset_id": "GDS1518", "description": "conditioned medium from BSN cells", "sample_id": [ "GSM76383", "GSM76384", "GSM76385" ], "type": "agent", "id": "GDS1518_1" }, { "dataset_id": "GDS1518", "description": "heregulin", "sample_id": [ "GSM76386", "GSM76387", "GSM76388" ], "type": "agent", "id": "GDS1518_2" }, { "dataset_id": "GDS1518", "description": "pleiotrophin", "sample_id": [ "GSM76389", "GSM76390", "GSM76391" ], "type": "agent", "id": "GDS1518_3" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1518", "version": 1.0, "instances": "9", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1518.tab", "compression": "gz" } ], [ [ "GDS1519.tab" ], { "title": "Fibroblasts induced to an antiviral state by interferon-beta", "description": "Analysis of wildtype embryo fibroblasts (MEFs) induced to an antiviral state with interferon IFN-\u03b2. IFN-\u03b2 plays a crucial role in host defense by modulating gene expression and inducing antiviral activity. Results identify IFN-induced genes believed responsible for the antiviral action of IFN.", "type": "Expression profiling by array", "pubmed_id": "15131130", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3400", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1519", "description": "untreated", "sample_id": [ "GSM76653", "GSM76654", "GSM76655" ], "type": "agent", "id": "GDS1519_1" }, { "dataset_id": "GDS1519", "description": "interferon beta", "sample_id": [ "GSM76656", "GSM76657", "GSM76658" ], "type": "agent", "id": "GDS1519_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1519", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1519.tab", "compression": "gz" } ], [ [ "GDS1520.tab" ], { "title": "Mast cell activation via the Fc(epsilon)RI", "description": "Analysis of umbilical cord blood-derived mast cells 2 hours post stimulation by high-affinity IgE receptor (Fc\u03b5RI). Cells incubated with myeloma IgE and IL-4 prior to stimulation. Cells activated via Fc\u03b5RI with anti-IgE antibody to induce release of antihistamines and other inflammation mediators.", "type": "Expression profiling by array", "pubmed_id": "12079505", "platform": "GPL2824", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "18432", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE3271", "order": "none", "update_date": "May 17 2006", "subsets": [ { "dataset_id": "GDS1520", "description": "batch S7", "sample_id": [ "GSM73588", "GSM73589", "GSM73590" ], "type": "other", "id": "GDS1520_1" }, { "dataset_id": "GDS1520", "description": "batch S8", "sample_id": [ "GSM73587", "GSM73591", "GSM73592" ], "type": "other", "id": "GDS1520_2" }, { "dataset_id": "GDS1520", "description": "untreated", "sample_id": [ "GSM73589", "GSM73591" ], "type": "agent", "id": "GDS1520_3" }, { "dataset_id": "GDS1520", "description": "anti-IgE", "sample_id": [ "GSM73588", "GSM73592", "GSM73587", "GSM73590" ], "type": "agent", "id": "GDS1520_4" }, { "dataset_id": "GDS1520", "description": "0 h", "sample_id": [ "GSM73589", "GSM73591" ], "type": "time", "id": "GDS1520_5" }, { "dataset_id": "GDS1520", "description": "1 h", "sample_id": [ "GSM73588", "GSM73592" ], "type": "time", "id": "GDS1520_6" }, { "dataset_id": "GDS1520", "description": "2 h", "sample_id": [ "GSM73587", "GSM73590" ], "type": "time", "id": "GDS1520_7" } ], "taxid": "9606", "genes": 14146, "aggregation_function": "mean", "name": "GDS1520", "version": 1.0, "instances": "6", "variables": 14150, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1520.tab", "compression": "gz" } ], [ [ "GDS1521.tab" ], { "title": "Heat shock transcription factor 1 C-terminal domain mutant", "description": "Expression profiling of heat shock factor 1 (HSF1) C-terminal domain mutant (hsf1-ba1). The hsf1-ba1 mutation inhibits the heat-induced hyperphosphorylation of Hsf1. Results identify genes whose transcriptional response to heat shock is reduced by the hsf1-ba1 mutation.", "type": "Expression profiling by array", "pubmed_id": "16361698", "platform": "GPL205", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6084", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE3361", "order": "none", "update_date": "May 17 2006", "subsets": [ { "dataset_id": "GDS1521", "description": "wild type", "sample_id": [ "GSM37978", "GSM76014" ], "type": "genotype/variation", "id": "GDS1521_1" }, { "dataset_id": "GDS1521", "description": "hsf1-ba1", "sample_id": [ "GSM76015", "GSM76016" ], "type": "genotype/variation", "id": "GDS1521_2" } ], "taxid": "4932", "genes": 6051, "aggregation_function": "mean", "name": "GDS1521", "version": 1.0, "instances": "4", "variables": 6053, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1521.tab", "compression": "gz" } ], [ [ "GDS1522.tab" ], { "title": "Forebrain neuronal subtypes", "description": "Analysis of 12 distinct neuronal subpopulations from 5 regions of the adult forebrain. Results identify highly heterogeneous expression profiles that likely underlie the fundamental differences observed between neuronal classes and between glutamatergic and GABAergic neurons within a given class.", "type": "Expression profiling by array", "pubmed_id": "16369481", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE2882", "order": "none", "update_date": "Jun 05 2006", "subsets": [ { "dataset_id": "GDS1522", "description": "hippocampus", "sample_id": [ "GSM63015", "GSM63016", "GSM63017", "GSM63042", "GSM63043", "GSM63044" ], "type": "tissue", "id": "GDS1522_1" }, { "dataset_id": "GDS1522", "description": "cingulate cortex", "sample_id": [ "GSM63018", "GSM63019", "GSM63020", "GSM63021", "GSM63022", "GSM63023", "GSM63024", "GSM63025", "GSM63026", "GSM63033", "GSM63034", "GSM63035", "GSM63036", "GSM63037", "GSM63038" ], "type": "tissue", "id": "GDS1522_2" }, { "dataset_id": "GDS1522", "description": "somatosensory cortex", "sample_id": [ "GSM63027", "GSM63028", "GSM63029", "GSM63039", "GSM63040", "GSM63041" ], "type": "tissue", "id": "GDS1522_3" }, { "dataset_id": "GDS1522", "description": "lateral geniculate nucleus (thalamus)", "sample_id": [ "GSM63030", "GSM63031", "GSM63032" ], "type": "tissue", "id": "GDS1522_4" }, { "dataset_id": "GDS1522", "description": "amygdala", "sample_id": [ "GSM63045", "GSM63046", "GSM63047", "GSM63048", "GSM63049", "GSM63050" ], "type": "tissue", "id": "GDS1522_5" }, { "dataset_id": "GDS1522", "description": "cingulate cortex homogenate", "sample_id": [ "GSM64186", "GSM64187", "GSM64188", "GSM64189", "GSM64190", "GSM64191" ], "type": "tissue", "id": "GDS1522_6" }, { "dataset_id": "GDS1522", "description": "GABAergic neuron", "sample_id": [ "GSM63015", "GSM63016", "GSM63017", "GSM63018", "GSM63019", "GSM63020", "GSM63021", "GSM63022", "GSM63023", "GSM63024", "GSM63025", "GSM63026", "GSM63027", "GSM63028", "GSM63029", "GSM63030", "GSM63031", "GSM63032", "GSM64186", "GSM64187", "GSM64188", "GSM64189", "GSM64190", "GSM64191" ], "type": "cell type", "id": "GDS1522_7" }, { "dataset_id": "GDS1522", "description": "glutamatergic neuron", "sample_id": [ "GSM63033", "GSM63034", "GSM63035", "GSM63036", "GSM63037", "GSM63038", "GSM63039", "GSM63040", "GSM63041", "GSM63042", "GSM63043", "GSM63044", "GSM63045", "GSM63046", "GSM63047", "GSM63048", "GSM63049", "GSM63050" ], "type": "cell type", "id": "GDS1522_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1522", "version": 1.0, "instances": "42", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1522.tab", "compression": "gz" } ], [ [ "GDS1523.tab" ], { "title": "Ovarian cancer cell lines", "description": "Analysis of 10 ovarian cancer cell lines: 4 ovarian serous adenocarcinomas, 1 paclitaxel/cisplatin resistant ovarian adenocarcinoma cell line derivative, 5 ovarian clear cell adenocarcinomas. Expression profile of each cell line compared to its sensitivity to paclitaxel and cisplatin.", "type": "Expression profiling by array", "pubmed_id": "16546992", "platform": "GPL1928", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20470", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE3001", "order": "none", "update_date": "May 17 2006", "subsets": [ { "dataset_id": "GDS1523", "description": "clear cell adenocarcinoma", "sample_id": [ "GSM65644", "GSM65645", "GSM65646", "GSM65647", "GSM65648" ], "type": "disease state", "id": "GDS1523_1" }, { "dataset_id": "GDS1523", "description": "serous adenocarcinoma", "sample_id": [ "GSM65642", "GSM65643", "GSM65649", "GSM65650", "GSM65651" ], "type": "disease state", "id": "GDS1523_2" }, { "dataset_id": "GDS1523", "description": "not applicable", "sample_id": [ "GSM65642", "GSM65643", "GSM65644", "GSM65645", "GSM65646", "GSM65647", "GSM65648", "GSM65649" ], "type": "cell type", "id": "GDS1523_3" }, { "dataset_id": "GDS1523", "description": "parental of paclitaxel/cisplatin derivative", "sample_id": [ "GSM65650" ], "type": "cell type", "id": "GDS1523_4" }, { "dataset_id": "GDS1523", "description": "paclitaxel/cisplatin resistant derivative", "sample_id": [ "GSM65651" ], "type": "cell type", "id": "GDS1523_5" } ], "taxid": "9606", "genes": 16345, "aggregation_function": "mean", "name": "GDS1523", "version": 1.0, "instances": "10", "variables": 16348, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1523.tab", "compression": "gz" } ], [ [ "GDS1526.tab" ], { "title": "Heterochromatin protein HP-1 depletion effect on third instar larvae", "description": "Analysis of male and female 3rd instar larvae following depletion of heterochromatin protein 1 (HP1) using a Gal4-induced RNA interference system. Results provide insight into the function of HP1 during development and a sex-specific role.", "type": "Expression profiling by array", "pubmed_id": "16258543", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE3055", "order": "none", "update_date": "May 17 2006", "subsets": [ { "dataset_id": "GDS1526", "description": "control", "sample_id": [ "GSM67063", "GSM67064", "GSM67065", "GSM67066", "GSM67067", "GSM67068", "GSM67069", "GSM67070" ], "type": "protocol", "id": "GDS1526_1" }, { "dataset_id": "GDS1526", "description": "HP1 RNAi", "sample_id": [ "GSM67071", "GSM67072", "GSM67073" ], "type": "protocol", "id": "GDS1526_2" }, { "dataset_id": "GDS1526", "description": "+/act-Gal4", "sample_id": [ "GSM67063", "GSM67064", "GSM67065", "GSM67066" ], "type": "genotype/variation", "id": "GDS1526_3" }, { "dataset_id": "GDS1526", "description": "+/P-act", "sample_id": [ "GSM67071", "GSM67072", "GSM67073" ], "type": "genotype/variation", "id": "GDS1526_4" }, { "dataset_id": "GDS1526", "description": "+/P", "sample_id": [ "GSM67067", "GSM67068", "GSM67069", "GSM67070" ], "type": "genotype/variation", "id": "GDS1526_5" }, { "dataset_id": "GDS1526", "description": "male", "sample_id": [ "GSM67063", "GSM67064", "GSM67067", "GSM67068", "GSM67071", "GSM67072" ], "type": "gender", "id": "GDS1526_6" }, { "dataset_id": "GDS1526", "description": "female", "sample_id": [ "GSM67065", "GSM67066", "GSM67069", "GSM67070", "GSM67073" ], "type": "gender", "id": "GDS1526_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS1526", "version": 1.0, "instances": "11", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1526.tab", "compression": "gz" } ], [ [ "GDS1527.tab" ], { "title": "Heat shock factor HSF1 null mutant fibroblast response to heat shock: time course", "description": "Expression profiling of embryonic fibroblasts lacking heat shock factor 1 (HSF1) at various time points up to 8 hours of heat shock. Results provide insight into the role of HSF1 in the regulation of gene expression during heat shock.", "type": "Expression profiling by array", "pubmed_id": "14668476", "platform": "GPL2727", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "42624", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE3074", "order": "none", "update_date": "May 17 2006", "subsets": [ { "dataset_id": "GDS1527", "description": "wild type", "sample_id": [ "GSM67495", "GSM67497", "GSM67499", "GSM67501", "GSM67503", "GSM67506", "GSM67508", "GSM67510", "GSM67511", "GSM67512" ], "type": "genotype/variation", "id": "GDS1527_1" }, { "dataset_id": "GDS1527", "description": "HSF1 mutant", "sample_id": [ "GSM67493", "GSM67494", "GSM67496", "GSM67498", "GSM67500", "GSM67502", "GSM67504", "GSM67505", "GSM67507", "GSM67509" ], "type": "genotype/variation", "id": "GDS1527_2" }, { "dataset_id": "GDS1527", "description": "0 h", "sample_id": [ "GSM67504", "GSM67506", "GSM67507", "GSM67509", "GSM67510", "GSM67512" ], "type": "time", "id": "GDS1527_3" }, { "dataset_id": "GDS1527", "description": "0.5 h", "sample_id": [ "GSM67502", "GSM67508" ], "type": "time", "id": "GDS1527_4" }, { "dataset_id": "GDS1527", "description": "1 h", "sample_id": [ "GSM67500", "GSM67503" ], "type": "time", "id": "GDS1527_5" }, { "dataset_id": "GDS1527", "description": "2 h", "sample_id": [ "GSM67498", "GSM67501" ], "type": "time", "id": "GDS1527_6" }, { "dataset_id": "GDS1527", "description": "3 h", "sample_id": [ "GSM67496", "GSM67499" ], "type": "time", "id": "GDS1527_7" }, { "dataset_id": "GDS1527", "description": "4 h", "sample_id": [ "GSM67494", "GSM67497" ], "type": "time", "id": "GDS1527_8" }, { "dataset_id": "GDS1527", "description": "6 h", "sample_id": [ "GSM67493", "GSM67495" ], "type": "time", "id": "GDS1527_9" }, { "dataset_id": "GDS1527", "description": "8 h", "sample_id": [ "GSM67505", "GSM67511" ], "type": "time", "id": "GDS1527_10" } ], "taxid": "10090", "genes": 29512, "aggregation_function": "mean", "name": "GDS1527", "version": 1.0, "instances": "20", "variables": 29515, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1527.tab", "compression": "gz" } ], [ [ "GDS1528.tab" ], { "title": "Embryonic fibroblast response to adenoviral vector infection (Mu11K-A)", "description": "Analysis of primary C57BL/6 embryonic fibroblasts infected with a 1st generation adenoviral (Ad) vector. Ad vectors are known to induce certain genes and impact innate response networks. Results provide insight into the innate immune response of cells to Ad transduction.", "type": "Expression profiling by array", "pubmed_id": "17027060", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3172", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1528", "description": "mock", "sample_id": [ "GSM60527", "GSM60528", "GSM60531", "GSM60532", "GSM60533", "GSM60534" ], "type": "infection", "id": "GDS1528_1" }, { "dataset_id": "GDS1528", "description": "adenoviral vector", "sample_id": [ "GSM61831", "GSM61832", "GSM61833", "GSM61834", "GSM61835", "GSM61836" ], "type": "infection", "id": "GDS1528_2" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS1528", "version": 1.0, "instances": "12", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1528.tab", "compression": "gz" } ], [ [ "GDS1529.tab" ], { "title": "Embryonic fibroblast response to adenoviral vector infection (Mu11K-B)", "description": "Analysis of primary C57BL/6 embryonic fibroblasts infected with a 1st generation adenoviral (Ad) vector. Ad vectors are known to induce certain genes and impact innate response networks. Results provide insight into the innate immune response of cells to Ad transduction.", "type": "Expression profiling by array", "pubmed_id": "17027060", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3172", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1529", "description": "mock", "sample_id": [ "GSM60833", "GSM60834", "GSM60835", "GSM60836", "GSM60837", "GSM60838" ], "type": "infection", "id": "GDS1529_1" }, { "dataset_id": "GDS1529", "description": "adenoviral vector", "sample_id": [ "GSM61905", "GSM61906", "GSM61907", "GSM61908", "GSM61909", "GSM61910" ], "type": "infection", "id": "GDS1529_2" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS1529", "version": 1.0, "instances": "12", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1529.tab", "compression": "gz" } ], [ [ "GDS1530.tab" ], { "title": "Fibroblast response to cytomegalovirus infection: time course", "description": "Analysis of fibroblasts infected with cytomegalovirus (CMV) AD169 strain or a derivative lacking the CMV chemokine receptor US28. Cells examined at 50, 72, and 98 hours post-infection. Results identify pathways affected by CMV and provide insight into the role of US28 in the late phase of infection.", "type": "Expression profiling by array", "pubmed_id": "15479839", "platform": "GPL2779", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE3194", "order": "none", "update_date": "Jan 10 2006", "subsets": [ { "dataset_id": "GDS1530", "description": "AD169", "sample_id": [ "GSM71837", "GSM71838", "GSM71839", "GSM71840", "GSM71841", "GSM71844" ], "type": "infection", "id": "GDS1530_1" }, { "dataset_id": "GDS1530", "description": "US28 deficient", "sample_id": [ "GSM71836", "GSM71842", "GSM71843", "GSM71845", "GSM71846", "GSM71847" ], "type": "infection", "id": "GDS1530_2" }, { "dataset_id": "GDS1530", "description": "50 h", "sample_id": [ "GSM71837", "GSM71841", "GSM71843", "GSM71846" ], "type": "time", "id": "GDS1530_3" }, { "dataset_id": "GDS1530", "description": "72 h", "sample_id": [ "GSM71836", "GSM71840", "GSM71842", "GSM71844" ], "type": "time", "id": "GDS1530_4" }, { "dataset_id": "GDS1530", "description": "98 h", "sample_id": [ "GSM71838", "GSM71839", "GSM71845", "GSM71847" ], "type": "time", "id": "GDS1530_5" } ], "taxid": "9606", "genes": 32937, "aggregation_function": "mean", "name": "GDS1530", "version": 1.0, "instances": "12", "variables": 32940, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1530.tab", "compression": "gz" } ], [ [ "GDS1531.tab" ], { "title": "Chito-oligomer effect on seedlings", "description": "Analysis of 14-day-old Columbia-0 seedlings treated with hydrolyzed crab-shell chitin or chito-octamer. Chitin is a major component of fungal walls and insect exoskeletons. Results provide insight into the signaling pathways involved in activating defense genes in response to chito-oligomers.", "type": "Expression profiling by array", "pubmed_id": "15923325", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2538", "order": "none", "update_date": "Jun 05 2006", "subsets": [ { "dataset_id": "GDS1531", "description": "chitin octamer", "sample_id": [ "GSM48122", "GSM48123", "GSM48124" ], "type": "agent", "id": "GDS1531_1" }, { "dataset_id": "GDS1531", "description": "crab shell chitin", "sample_id": [ "GSM48125", "GSM48126", "GSM48127" ], "type": "agent", "id": "GDS1531_2" }, { "dataset_id": "GDS1531", "description": "water", "sample_id": [ "GSM48128", "GSM48129", "GSM48130" ], "type": "agent", "id": "GDS1531_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1531", "version": 1.0, "instances": "9", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1531.tab", "compression": "gz" } ], [ [ "GDS1532.tab" ], { "title": "Alternative oxidase anti-sense silencing effect on leaves", "description": "Analysis of leaves of Columbia-0 plants transformed with an anti-sense mitochondrial alternative oxidase (AOX) construct to silence AOX. Results provide insight into the role of AOX in limiting the formation of reactive oxygen species and in the acclimation to oxidative stress.", "type": "Expression profiling by array", "pubmed_id": "16299171", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2406", "order": "none", "update_date": "Jun 05 2006", "subsets": [ { "dataset_id": "GDS1532", "description": "wild-type", "sample_id": [ "GSM45208", "GSM45209" ], "type": "strain", "id": "GDS1532_1" }, { "dataset_id": "GDS1532", "description": "AOX anti-sense", "sample_id": [ "GSM45231", "GSM45278" ], "type": "strain", "id": "GDS1532_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1532", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1532.tab", "compression": "gz" } ], [ [ "GDS1533.tab" ], { "title": "Type 1 diabetes mellitus progression model", "description": "Analysis of pancreas of 3-week-old BDC2.5 transgenics that express a diabetogenic T cell receptor on the NOD or NOD.scid genetic background. BDC2.5/NOD has severe insulitis. BDC2.5/NOD.scid has severe insulitis and type 1 diabetes (T1D). Result provides insight into the pathogenesis of T1D.", "type": "Expression profiling by array", "pubmed_id": "15671250", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE1623", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1533", "description": "NOD", "sample_id": [ "GSM27456", "GSM27457" ], "type": "strain", "id": "GDS1533_1" }, { "dataset_id": "GDS1533", "description": "NOD.scid", "sample_id": [ "GSM27453", "GSM27454" ], "type": "strain", "id": "GDS1533_2" }, { "dataset_id": "GDS1533", "description": "BDC2.5/NOD", "sample_id": [ "GSM27446", "GSM27447" ], "type": "strain", "id": "GDS1533_3" }, { "dataset_id": "GDS1533", "description": "BDC2.5/NOD.scid", "sample_id": [ "GSM27451", "GSM27452" ], "type": "strain", "id": "GDS1533_4" }, { "dataset_id": "GDS1533", "description": "control", "sample_id": [ "GSM27456", "GSM27457", "GSM27453", "GSM27454" ], "type": "disease state", "id": "GDS1533_5" }, { "dataset_id": "GDS1533", "description": "insulitis", "sample_id": [ "GSM27446", "GSM27447" ], "type": "disease state", "id": "GDS1533_6" }, { "dataset_id": "GDS1533", "description": "insulitis and diabetes", "sample_id": [ "GSM27451", "GSM27452" ], "type": "disease state", "id": "GDS1533_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1533", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1533.tab", "compression": "gz" } ], [ [ "GDS1534.tab" ], { "title": "DNA-binding protein SPT10 mutants", "description": "Analysis of spt10 null deletion and spt10(C388S) mutants. SPT10 encodes a putative histone acetyltranferase implicated as a global transcription regulator and is involved in chromatin maintenance. The C388S mutation disrupts a predicted zinc finger that may be part of the DNA-binding domain.", "type": "Expression profiling by array", "pubmed_id": "16415340", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3354", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1534", "description": "wild type", "sample_id": [ "GSM45194", "GSM45279", "GSM45281" ], "type": "genotype/variation", "id": "GDS1534_1" }, { "dataset_id": "GDS1534", "description": "spt10(C388S) mutant", "sample_id": [ "GSM75830", "GSM75831", "GSM75832" ], "type": "genotype/variation", "id": "GDS1534_2" }, { "dataset_id": "GDS1534", "description": "spt10 null mutant", "sample_id": [ "GSM45282", "GSM45283", "GSM45284" ], "type": "genotype/variation", "id": "GDS1534_3" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1534", "version": 1.0, "instances": "9", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1534.tab", "compression": "gz" } ], [ [ "GDS1541.tab" ], { "title": "Exercise effect on diabetic skeletal muscle: time course", "description": "Analysis of experimental type 1 diabetic skeletal muscle subjected to endurance training. Diabetic muscle atrophy is accompanied by changes in the extracellular matrix (ECM). Results suggest the diabetes-induced decrease in gene expression of ECM proteins is partially attenuated by training.", "type": "Expression profiling by array", "pubmed_id": [ "16352670", "16816123", "17003243" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1659", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1541", "description": "healthy", "sample_id": [ "GSM28550", "GSM28551", "GSM28552", "GSM28559", "GSM28560", "GSM28561" ], "type": "disease state", "id": "GDS1541_1" }, { "dataset_id": "GDS1541", "description": "diabetic", "sample_id": [ "GSM28553", "GSM28554", "GSM28555", "GSM28556", "GSM28557", "GSM28558" ], "type": "disease state", "id": "GDS1541_2" }, { "dataset_id": "GDS1541", "description": "sedentary", "sample_id": [ "GSM28550", "GSM28551", "GSM28552", "GSM28553", "GSM28554", "GSM28555" ], "type": "protocol", "id": "GDS1541_3" }, { "dataset_id": "GDS1541", "description": "trained", "sample_id": [ "GSM28556", "GSM28557", "GSM28558", "GSM28559", "GSM28560", "GSM28561" ], "type": "protocol", "id": "GDS1541_4" }, { "dataset_id": "GDS1541", "description": "1 week", "sample_id": [ "GSM28550", "GSM28553", "GSM28556", "GSM28559" ], "type": "time", "id": "GDS1541_5" }, { "dataset_id": "GDS1541", "description": "3 weeks", "sample_id": [ "GSM28551", "GSM28554", "GSM28557", "GSM28560" ], "type": "time", "id": "GDS1541_6" }, { "dataset_id": "GDS1541", "description": "5 weeks", "sample_id": [ "GSM28552", "GSM28555", "GSM28558", "GSM28561" ], "type": "time", "id": "GDS1541_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1541", "version": 1.0, "instances": "12", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1541.tab", "compression": "gz" } ], [ [ "GDS1542.tab" ], { "title": "Tumor necrosis factor effect on macrovascular umbilical vein endothelial cells", "description": "Analysis of macrovascular umbilical vein endothelial cells (HUVEC) stimulated with tumor necrosis factor (TNF)-alpha for 5 hours. TNF is a potent inflammatory stimulus. Results provide insight into the relevance of the diversity of endothelial cell subtypes for the response to inflammatory stimuli.", "type": "Expression profiling by array", "pubmed_id": "16617158", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2639", "order": "none", "update_date": "Nov 03 2006", "subsets": [ { "dataset_id": "GDS1542", "description": "control", "sample_id": [ "GSM50777", "GSM50778", "GSM50779", "GSM50780" ], "type": "agent", "id": "GDS1542_1" }, { "dataset_id": "GDS1542", "description": "tumor necrosis factor", "sample_id": [ "GSM50781", "GSM50782", "GSM50783", "GSM50784" ], "type": "agent", "id": "GDS1542_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1542", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1542.tab", "compression": "gz" } ], [ [ "GDS1543.tab" ], { "title": "Tumor necrosis factor effect on microvascular endothelial cells", "description": "Analysis of microvascular endothelial cells (HMEC) stimulated with tumor necrosis factor (TNF)-alpha for 5 hours. TNF is a potent inflammatory stimulus. Results provide insight into the relevance of the diversity of endothelial cell subtypes for the response to inflammatory stimuli.", "type": "Expression profiling by array", "pubmed_id": "16617158", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2638", "order": "none", "update_date": "Nov 03 2006", "subsets": [ { "dataset_id": "GDS1543", "description": "control", "sample_id": [ "GSM50771", "GSM50772", "GSM50773" ], "type": "agent", "id": "GDS1543_1" }, { "dataset_id": "GDS1543", "description": "tumor necrosis factor", "sample_id": [ "GSM50774", "GSM50775", "GSM50776" ], "type": "agent", "id": "GDS1543_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1543", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1543.tab", "compression": "gz" } ], [ [ "GDS1544.tab" ], { "title": "Ionizing radiation effect on lymphoid tissue of ATM protein kinase deficient mutants", "description": "Analysis of lymph nodes from ATM-deficient males exposed to ionizing radiation (IR). ATM regulates the cellular network induced by DNA double-strand breaks and is often mutated in lymphoid tumors. Results identify parallel induction of ATM-dependent pro- and antiapoptotic signals in response to IR.", "type": "Expression profiling by array", "pubmed_id": "16314843", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE2118", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1544", "description": "wild type", "sample_id": [ "GSM38262", "GSM38263", "GSM38264", "GSM38265", "GSM38266", "GSM38267", "GSM38268" ], "type": "genotype/variation", "id": "GDS1544_1" }, { "dataset_id": "GDS1544", "description": "mutant", "sample_id": [ "GSM38269", "GSM38270", "GSM38271", "GSM38272", "GSM38273", "GSM38274", "GSM38275" ], "type": "genotype/variation", "id": "GDS1544_2" }, { "dataset_id": "GDS1544", "description": "untreated", "sample_id": [ "GSM38262", "GSM38263", "GSM38264", "GSM38269", "GSM38270", "GSM38271" ], "type": "stress", "id": "GDS1544_3" }, { "dataset_id": "GDS1544", "description": "ionizing radiation", "sample_id": [ "GSM38265", "GSM38266", "GSM38267", "GSM38268", "GSM38272", "GSM38273", "GSM38274", "GSM38275" ], "type": "stress", "id": "GDS1544_4" }, { "dataset_id": "GDS1544", "description": "0 min", "sample_id": [ "GSM38262", "GSM38263", "GSM38264", "GSM38269", "GSM38270", "GSM38271" ], "type": "time", "id": "GDS1544_5" }, { "dataset_id": "GDS1544", "description": "30 min", "sample_id": [ "GSM38265", "GSM38266", "GSM38272", "GSM38273" ], "type": "time", "id": "GDS1544_6" }, { "dataset_id": "GDS1544", "description": "120 min", "sample_id": [ "GSM38267", "GSM38268", "GSM38274", "GSM38275" ], "type": "time", "id": "GDS1544_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1544", "version": 1.0, "instances": "14", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1544.tab", "compression": "gz" } ], [ [ "GDS1545.tab" ], { "title": "Salt sensitive hypertension: kidney (RG-U34A)", "description": "Comparison of kidneys from a hypertensive salt-sensitive strain and a congenic salt-resistant strain, with much lower blood pressure (BP). Expression of genes located in the 2.4 cM BP quantitative trait locus (QTL) interval on chromosome 9 examined.", "type": "Expression profiling by array", "pubmed_id": "15655120", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1775", "order": "none", "update_date": "Jun 06 2006", "subsets": [ { "dataset_id": "GDS1545", "description": "salt-sensitive", "sample_id": [ "GSM30744", "GSM30748", "GSM30750" ], "type": "strain", "id": "GDS1545_1" }, { "dataset_id": "GDS1545", "description": "salt-resistant", "sample_id": [ "GSM30743", "GSM30746", "GSM30749" ], "type": "strain", "id": "GDS1545_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1545", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1545.tab", "compression": "gz" } ], [ [ "GDS1546.tab" ], { "title": "Salt sensitive hypertension: kidney (RG-U34B)", "description": "Comparison of kidneys from a hypertensive salt-sensitive strain and a congenic salt-resistant strain, with much lower blood pressure (BP). Expression of genes located in the 2.4 cM BP quantitative trait locus (QTL) interval on chromosome 9 examined.", "type": "Expression profiling by array", "pubmed_id": "15655120", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1775", "order": "none", "update_date": "Jun 06 2006", "subsets": [ { "dataset_id": "GDS1546", "description": "salt-sensitive", "sample_id": [ "GSM30752", "GSM30754", "GSM30757" ], "type": "strain", "id": "GDS1546_1" }, { "dataset_id": "GDS1546", "description": "salt-resistant", "sample_id": [ "GSM30751", "GSM30753", "GSM30755" ], "type": "strain", "id": "GDS1546_2" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS1546", "version": 1.0, "instances": "6", "variables": 7620, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1546.tab", "compression": "gz" } ], [ [ "GDS1547.tab" ], { "title": "Salt sensitive hypertension: kidney (RG-U34C)", "description": "Comparison of kidneys from a hypertensive salt-sensitive strain and a congenic salt-resistant strain, with much lower blood pressure (BP). Expression of genes located in the 2.4 cM BP quantitative trait locus (QTL) interval on chromosome 9 examined.", "type": "Expression profiling by array", "pubmed_id": "15655120", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1775", "order": "none", "update_date": "Jun 06 2006", "subsets": [ { "dataset_id": "GDS1547", "description": "salt-sensitive", "sample_id": [ "GSM30760", "GSM30765", "GSM30768" ], "type": "strain", "id": "GDS1547_1" }, { "dataset_id": "GDS1547", "description": "salt-resistant", "sample_id": [ "GSM30758", "GSM30761", "GSM30766" ], "type": "strain", "id": "GDS1547_2" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS1547", "version": 1.0, "instances": "6", "variables": 7584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1547.tab", "compression": "gz" } ], [ [ "GDS1548.tab" ], { "title": "Neuroblastoma cell lines", "description": "Analysis of four cell lines initially established as neuroblastomas. Results indicate that the SK-N-MC cell line expresses all of the Ewing Family Tumor (EFT) signature genes. EFTs are small round blue cell tumors that show features of neuroectodermal differentiation.", "type": "Expression profiling by array", "pubmed_id": [ "15548687", "18435455" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1824", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1548", "description": "SK-N-MC", "sample_id": [ "GSM31867" ], "type": "cell line", "id": "GDS1548_1" }, { "dataset_id": "GDS1548", "description": "SIMA", "sample_id": [ "GSM31868" ], "type": "cell line", "id": "GDS1548_2" }, { "dataset_id": "GDS1548", "description": "CHP-126", "sample_id": [ "GSM31869" ], "type": "cell line", "id": "GDS1548_3" }, { "dataset_id": "GDS1548", "description": "SH-SY5Y", "sample_id": [ "GSM31870" ], "type": "cell line", "id": "GDS1548_4" }, { "dataset_id": "GDS1548", "description": "Ewing Family Tumor", "sample_id": [ "GSM31867" ], "type": "disease state", "id": "GDS1548_5" }, { "dataset_id": "GDS1548", "description": "neuroblastoma", "sample_id": [ "GSM31868", "GSM31869", "GSM31870" ], "type": "disease state", "id": "GDS1548_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1548", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1548.tab", "compression": "gz" } ], [ [ "GDS1549.tab" ], { "title": "Estrogen effect on estrogen receptor alpha positive breast cancer cell lines", "description": "Expression profiling of estrogen receptor positive breast cancer cell lines treated with estradiol for 24 hours. MCF-7, T47-D, and BT-474 breast cancer cell lines examined. Results identify candidate genes involved in estrogen stimulated breast cancer growth.", "type": "Expression profiling by array", "pubmed_id": "15986123", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3529", "order": "none", "update_date": "Jan 17 2006", "subsets": [ { "dataset_id": "GDS1549", "description": "BT-474", "sample_id": [ "GSM80914", "GSM80915", "GSM80916", "GSM80917" ], "type": "cell line", "id": "GDS1549_1" }, { "dataset_id": "GDS1549", "description": "T47-D", "sample_id": [ "GSM80918", "GSM80919", "GSM80920", "GSM80921" ], "type": "cell line", "id": "GDS1549_2" }, { "dataset_id": "GDS1549", "description": "MCF-7", "sample_id": [ "GSM80922", "GSM80923", "GSM80924", "GSM80925" ], "type": "cell line", "id": "GDS1549_3" }, { "dataset_id": "GDS1549", "description": "control", "sample_id": [ "GSM80914", "GSM80915", "GSM80918", "GSM80919", "GSM80922", "GSM80923" ], "type": "agent", "id": "GDS1549_4" }, { "dataset_id": "GDS1549", "description": "estradiol", "sample_id": [ "GSM80916", "GSM80917", "GSM80920", "GSM80921", "GSM80924", "GSM80925" ], "type": "agent", "id": "GDS1549_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1549", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1549.tab", "compression": "gz" } ], [ [ "GDS1550.tab" ], { "title": "RNA polymerase II associated protein Paf1 depletion: time course", "description": "Analysis of cells depleted of Paf1, an RNA polymerase II associated protein. Cells were examined at various time points up to 8 hours following the inactivation of Paf1 expression from a tetracycline-regulated promoter using doxycyline (DOX). Results identify the primary targets of Paf1.", "type": "Expression profiling by array", "pubmed_id": "16246724", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3200", "order": "ordered", "update_date": "Nov 09 2006", "subsets": [ { "dataset_id": "GDS1550", "description": "0 h", "sample_id": [ "GSM71925" ], "type": "time", "id": "GDS1550_1" }, { "dataset_id": "GDS1550", "description": "2 h", "sample_id": [ "GSM71926" ], "type": "time", "id": "GDS1550_2" }, { "dataset_id": "GDS1550", "description": "4 h", "sample_id": [ "GSM71927" ], "type": "time", "id": "GDS1550_3" }, { "dataset_id": "GDS1550", "description": "5 h", "sample_id": [ "GSM71928" ], "type": "time", "id": "GDS1550_4" }, { "dataset_id": "GDS1550", "description": "6 h", "sample_id": [ "GSM71929" ], "type": "time", "id": "GDS1550_5" }, { "dataset_id": "GDS1550", "description": "8 h", "sample_id": [ "GSM71930" ], "type": "time", "id": "GDS1550_6" }, { "dataset_id": "GDS1550", "description": "untreated", "sample_id": [ "GSM71925" ], "type": "agent", "id": "GDS1550_7" }, { "dataset_id": "GDS1550", "description": "doxycycline", "sample_id": [ "GSM71926", "GSM71927", "GSM71928", "GSM71929", "GSM71930" ], "type": "agent", "id": "GDS1550_8" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1550", "version": 1.0, "instances": "6", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1550.tab", "compression": "gz" } ], [ [ "GDS1551.tab" ], { "title": "paf1 and ctr9 null mutants", "description": "Expression profiling of paf1 and ctr9 null mutants. Paf1p and Ctr9p are part of the Paf1 complex (Paf1C) of RNA polymerase II associated proteins. Results provide insight into the role of Paf1C in gene expression.", "type": "Expression profiling by array", "pubmed_id": "16246724", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3200", "order": "none", "update_date": "Nov 09 2006", "subsets": [ { "dataset_id": "GDS1551", "description": "wild type", "sample_id": [ "GSM71931", "GSM71932" ], "type": "genotype/variation", "id": "GDS1551_1" }, { "dataset_id": "GDS1551", "description": "paf1 null mutant", "sample_id": [ "GSM71933", "GSM71934" ], "type": "genotype/variation", "id": "GDS1551_2" }, { "dataset_id": "GDS1551", "description": "ctr9 null mutant", "sample_id": [ "GSM71935" ], "type": "genotype/variation", "id": "GDS1551_3" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1551", "version": 1.0, "instances": "5", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1551.tab", "compression": "gz" } ], [ [ "GDS1553.tab" ], { "title": "Fullerene effect on vascular endothelial cells", "description": "Analysis of umbilical vein endothelial cells (ECs) treated with hydroxyl fullerene, a major nanomaterial. Nanomaterials are known to translocate into the circulation and may thus directly affect vascular ECs. Results provide insight into the effects of fullerenes on endothelial injury and toxicity.", "type": "Expression profiling by array", "pubmed_id": "16407415", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3364", "order": "none", "update_date": "Nov 09 2006", "subsets": [ { "dataset_id": "GDS1553", "description": "untreated", "sample_id": [ "GSM76026", "GSM76027" ], "type": "agent", "id": "GDS1553_1" }, { "dataset_id": "GDS1553", "description": "fullerene", "sample_id": [ "GSM76028", "GSM76029" ], "type": "agent", "id": "GDS1553_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1553", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1553.tab", "compression": "gz" } ], [ [ "GDS1555.tab" ], { "title": "Glycerol kinase knockout effect on liver", "description": "Expression profiling of livers of 4 male glycerol kinase knockout mutants. Glycerol kinase deficiency (GKD) is an X-linked inborn error of metabolism with metabolic and neurologic crises. Results provide insight into the pathogenesis of GKD.", "type": "Expression profiling by array", "pubmed_id": "16368706", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3843", "order": "none", "update_date": "Nov 09 2006", "subsets": [ { "dataset_id": "GDS1555", "description": "wild type", "sample_id": [ "GSM87833", "GSM87834", "GSM87835", "GSM87836" ], "type": "genotype/variation", "id": "GDS1555_1" }, { "dataset_id": "GDS1555", "description": "glycerol kinase knockout", "sample_id": [ "GSM87837", "GSM87838", "GSM87839", "GSM87840" ], "type": "genotype/variation", "id": "GDS1555_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1555", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1555.tab", "compression": "gz" } ], [ [ "GDS1557.tab" ], { "title": "Atrial and ventricular myocardium comparison (HG-U133B)", "description": "Analysis of right atria and left ventricles of hearts. While both the ventricle and atrium contract, the atrium is also a source and target for neurohumoral signals. Results provide insight into the molecular basis for the ultrastructural and functional differences between the atrium and ventricle.", "type": "Expression profiling by array", "pubmed_id": [ "15877233", "15817885" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE2240", "order": "none", "update_date": "Nov 15 2006", "subsets": [ { "dataset_id": "GDS1557", "description": "ventricle", "sample_id": [ "GSM41115", "GSM41116", "GSM41117", "GSM41118", "GSM41119" ], "type": "tissue", "id": "GDS1557_1" }, { "dataset_id": "GDS1557", "description": "atrium", "sample_id": [ "GSM41095", "GSM41096", "GSM41097", "GSM41098", "GSM41099", "GSM41100", "GSM41101", "GSM41102", "GSM41103", "GSM41104", "GSM41105", "GSM41106", "GSM41107", "GSM41108", "GSM41109", "GSM41110", "GSM41111", "GSM41112", "GSM41113", "GSM41114" ], "type": "tissue", "id": "GDS1557_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1557", "version": 1.0, "instances": "25", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1557.tab", "compression": "gz" } ], [ [ "GDS1559.tab" ], { "title": "Permanent atrial fibrillation (HG-U133B)", "description": "Analysis of atrium from patients with permanent atrial fibrillation (AF). AF is associated with extensive structural, contractile, and electrophysiological remodeling. Results identify adoption of a ventricular-like genomic signature as a general feature of the fibrillating atrium.", "type": "Expression profiling by array", "pubmed_id": [ "15877233", "15817885" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE2240", "order": "none", "update_date": "Nov 16 2006", "subsets": [ { "dataset_id": "GDS1559", "description": "no atrial fibrillation", "sample_id": [ "GSM41095", "GSM41096", "GSM41097", "GSM41098", "GSM41099", "GSM41100", "GSM41101", "GSM41102", "GSM41103", "GSM41104", "GSM41105", "GSM41106", "GSM41107", "GSM41108", "GSM41109", "GSM41110", "GSM41111", "GSM41112", "GSM41113", "GSM41114", "GSM41115", "GSM41116", "GSM41117", "GSM41118", "GSM41119" ], "type": "disease state", "id": "GDS1559_1" }, { "dataset_id": "GDS1559", "description": "permanent atrial fibrillation", "sample_id": [ "GSM41085", "GSM41086", "GSM41087", "GSM41088", "GSM41089", "GSM41090", "GSM41091", "GSM41092", "GSM41093", "GSM41094" ], "type": "disease state", "id": "GDS1559_2" }, { "dataset_id": "GDS1559", "description": "ventricle", "sample_id": [ "GSM41115", "GSM41116", "GSM41117", "GSM41118", "GSM41119" ], "type": "tissue", "id": "GDS1559_3" }, { "dataset_id": "GDS1559", "description": "atrium", "sample_id": [ "GSM41085", "GSM41086", "GSM41087", "GSM41088", "GSM41089", "GSM41090", "GSM41091", "GSM41092", "GSM41093", "GSM41094", "GSM41095", "GSM41096", "GSM41097", "GSM41098", "GSM41099", "GSM41100", "GSM41101", "GSM41102", "GSM41103", "GSM41104", "GSM41105", "GSM41106", "GSM41107", "GSM41108", "GSM41109", "GSM41110", "GSM41111", "GSM41112", "GSM41113", "GSM41114" ], "type": "tissue", "id": "GDS1559_4" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1559", "version": 1.0, "instances": "35", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1559.tab", "compression": "gz" } ], [ [ "GDS156.tab" ], { "title": "Muscle function and aging (HG-U95A)", "description": "Comparison of gene expression in vastus lateralis skeletal muscle biopsies in healthy young (21-31 year old) and older (62-77 year old) men. Sample RNAs isolated from individuals and pooled into groups of 8.", "type": "Expression profiling by array", "pubmed_id": "12204100", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE80", "order": "ordered", "update_date": "Apr 17 2003", "subsets": [ { "dataset_id": "GDS156", "description": "21-31 year", "sample_id": [ "GSM2390", "GSM2391", "GSM2392", "GSM2393", "GSM2394", "GSM2395" ], "type": "age", "id": "GDS156_1" }, { "dataset_id": "GDS156", "description": "62-77 year", "sample_id": [ "GSM2396", "GSM2397", "GSM2398", "GSM2399", "GSM2400", "GSM2401" ], "type": "age", "id": "GDS156_2" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS156", "version": 1.0, "instances": "12", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS156.tab", "compression": "gz" } ], [ [ "GDS1560.tab" ], { "title": "Beta-catenin activation effect on skin: time course", "description": "Analysis of skin of deltaNB-cateninER transgenics following the activation of beta-catenin for up to 7 days. Onset and duration of beta-catenin activation in deltaNB-cateninER transgenics controlled by 4-hydroxytamoxifen. Results provide insight into how beta-catenin induces hair follicle growth.", "type": "Expression profiling by array", "pubmed_id": "15992546", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1579", "order": "none", "update_date": "Jun 06 2006", "subsets": [ { "dataset_id": "GDS1560", "description": "K14deltaNB-cateninER", "sample_id": [ "GSM26935", "GSM26940", "GSM26943", "GSM26938", "GSM26941", "GSM26944", "GSM26939", "GSM26942" ], "type": "strain", "id": "GDS1560_1" }, { "dataset_id": "GDS1560", "description": "wild-type", "sample_id": [ "GSM26946", "GSM26949", "GSM26952", "GSM26947", "GSM26950", "GSM26945", "GSM26948", "GSM26951" ], "type": "strain", "id": "GDS1560_2" }, { "dataset_id": "GDS1560", "description": "0 d", "sample_id": [ "GSM26935", "GSM26946", "GSM26938", "GSM26947", "GSM26945" ], "type": "time", "id": "GDS1560_3" }, { "dataset_id": "GDS1560", "description": "1 d", "sample_id": [ "GSM26940", "GSM26949", "GSM26941", "GSM26950", "GSM26939", "GSM26948" ], "type": "time", "id": "GDS1560_4" }, { "dataset_id": "GDS1560", "description": "7 d", "sample_id": [ "GSM26943", "GSM26952", "GSM26944", "GSM26942", "GSM26951" ], "type": "time", "id": "GDS1560_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1560", "version": 1.0, "instances": "16", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1560.tab", "compression": "gz" } ], [ [ "GDS1562.tab" ], { "title": "Alveolar rhabdomyosarcoma", "description": "Analysis of 14 tumor biopsies from children affected by alveolar rhabdomyosarcoma (ARMS). Seven patients were positive for the PAX3-FKHR fusion gene, which indicates an unfavorable prognosis. Results identify expression signatures that differentiate PAX3-FKHR positive from PAX3-FKHR negative ARMS.", "type": "Expression profiling by array", "pubmed_id": "16381018", "platform": "GPL2011", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log2 ratio", "reference_series": "GSE2787", "order": "none", "update_date": "Nov 16 2006", "subsets": [ { "dataset_id": "GDS1562", "description": "PAX3-FKHR negative", "sample_id": [ "GSM60567", "GSM60568", "GSM60569", "GSM60570", "GSM60571", "GSM60572", "GSM60573", "GSM60574", "GSM60575", "GSM60577", "GSM60580", "GSM60582", "GSM60596", "GSM60598" ], "type": "genotype/variation", "id": "GDS1562_1" }, { "dataset_id": "GDS1562", "description": "PAX3-FKHR positive", "sample_id": [ "GSM60462", "GSM60463", "GSM60465", "GSM60466", "GSM60556", "GSM60557", "GSM60558", "GSM60559", "GSM60563", "GSM60565", "GSM60585", "GSM60587", "GSM60600", "GSM60602" ], "type": "genotype/variation", "id": "GDS1562_2" } ], "taxid": "9606", "genes": 3255, "aggregation_function": "mean", "name": "GDS1562", "version": 1.0, "instances": "28", "variables": 3257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1562.tab", "compression": "gz" } ], [ [ "GDS1563.tab" ], { "title": "Host response to malaria", "description": "Analysis of whole blood from Kenyan children with acute malaria or other febrile illnesses, both at hospital admission and after recovery. Samples collected during July September 2002. Results provide a perspective of the host response to malaria and further insight into processes of pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "15838786", "platform": "GPL2614", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37632", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log2 ratio", "reference_series": "GSE2900", "order": "none", "update_date": "Nov 16 2006", "subsets": [ { "dataset_id": "GDS1563", "description": "convalescent", "sample_id": [ "GSM63318", "GSM63321", "GSM63326", "GSM63331", "GSM63333", "GSM63334" ], "type": "disease state", "id": "GDS1563_1" }, { "dataset_id": "GDS1563", "description": "febrile fit", "sample_id": [ "GSM63316" ], "type": "disease state", "id": "GDS1563_2" }, { "dataset_id": "GDS1563", "description": "pharyngeal infection", "sample_id": [ "GSM63329" ], "type": "disease state", "id": "GDS1563_3" }, { "dataset_id": "GDS1563", "description": "lower respiratory tract infection", "sample_id": [ "GSM63324", "GSM63339" ], "type": "disease state", "id": "GDS1563_4" }, { "dataset_id": "GDS1563", "description": "bacteremia", "sample_id": [ "GSM63323" ], "type": "disease state", "id": "GDS1563_5" }, { "dataset_id": "GDS1563", "description": "bacteremia and meningitis", "sample_id": [ "GSM63322" ], "type": "disease state", "id": "GDS1563_6" }, { "dataset_id": "GDS1563", "description": "bacteremia and malaria", "sample_id": [ "GSM63313" ], "type": "disease state", "id": "GDS1563_7" }, { "dataset_id": "GDS1563", "description": "malaria", "sample_id": [ "GSM63314", "GSM63315", "GSM63317", "GSM63319", "GSM63320", "GSM63325", "GSM63327", "GSM63328", "GSM63330", "GSM63332", "GSM63335", "GSM63336", "GSM63337", "GSM63338", "GSM63340" ], "type": "disease state", "id": "GDS1563_8" }, { "dataset_id": "GDS1563", "description": "patient 1", "sample_id": [ "GSM63316" ], "type": "individual", "id": "GDS1563_9" }, { "dataset_id": "GDS1563", "description": "patient 2", "sample_id": [ "GSM63322" ], "type": "individual", "id": "GDS1563_10" }, { "dataset_id": "GDS1563", "description": "patient 3", "sample_id": [ "GSM63323" ], "type": "individual", "id": "GDS1563_11" }, { "dataset_id": "GDS1563", "description": "patient 4", "sample_id": [ "GSM63324" ], "type": "individual", "id": "GDS1563_12" }, { "dataset_id": "GDS1563", "description": "patient 5", "sample_id": [ "GSM63329" ], "type": "individual", "id": "GDS1563_13" }, { "dataset_id": "GDS1563", "description": "patient 6", "sample_id": [ "GSM63339" ], "type": "individual", "id": "GDS1563_14" }, { "dataset_id": "GDS1563", "description": "patient 7", "sample_id": [ "GSM63314" ], "type": "individual", "id": "GDS1563_15" }, { "dataset_id": "GDS1563", "description": "patient 8", "sample_id": [ "GSM63315" ], "type": "individual", "id": "GDS1563_16" }, { "dataset_id": "GDS1563", "description": "patient 9", "sample_id": [ "GSM63319" ], "type": "individual", "id": "GDS1563_17" }, { "dataset_id": "GDS1563", "description": "patient 10", "sample_id": [ "GSM63320" ], "type": "individual", "id": "GDS1563_18" }, { "dataset_id": "GDS1563", "description": "patient 11", "sample_id": [ "GSM63325" ], "type": "individual", "id": "GDS1563_19" }, { "dataset_id": "GDS1563", "description": "patient 12", "sample_id": [ "GSM63327" ], "type": "individual", "id": "GDS1563_20" }, { "dataset_id": "GDS1563", "description": "patient 13", "sample_id": [ "GSM63328" ], "type": "individual", "id": "GDS1563_21" }, { "dataset_id": "GDS1563", "description": "patient 14", "sample_id": [ "GSM63313" ], "type": "individual", "id": "GDS1563_22" }, { "dataset_id": "GDS1563", "description": "patient 15", "sample_id": [ "GSM63337" ], "type": "individual", "id": "GDS1563_23" }, { "dataset_id": "GDS1563", "description": "patient 16", "sample_id": [ "GSM63338" ], "type": "individual", "id": "GDS1563_24" }, { "dataset_id": "GDS1563", "description": "patient 17", "sample_id": [ "GSM63330", "GSM63318" ], "type": "individual", "id": "GDS1563_25" }, { "dataset_id": "GDS1563", "description": "patient 18", "sample_id": [ "GSM63317", "GSM63321" ], "type": "individual", "id": "GDS1563_26" }, { "dataset_id": "GDS1563", "description": "patient 19", "sample_id": [ "GSM63332", "GSM63326" ], "type": "individual", "id": "GDS1563_27" }, { "dataset_id": "GDS1563", "description": "patient 20", "sample_id": [ "GSM63336", "GSM63331" ], "type": "individual", "id": "GDS1563_28" }, { "dataset_id": "GDS1563", "description": "patient 21", "sample_id": [ "GSM63340", "GSM63333" ], "type": "individual", "id": "GDS1563_29" }, { "dataset_id": "GDS1563", "description": "patient 22", "sample_id": [ "GSM63335", "GSM63334" ], "type": "individual", "id": "GDS1563_30" } ], "taxid": "9606", "genes": 27484, "aggregation_function": "mean", "name": "GDS1563", "version": 1.0, "instances": "28", "variables": 27487, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1563.tab", "compression": "gz" } ], [ [ "GDS1565.tab" ], { "title": "Thymocyte response to anti-T cell receptor antibody stimulation", "description": "Analysis of CD4+CD8+ double positive thymocytes following engagement of T cell receptor (TCR) with anti-\u03b1-chain (aV\u03b12) or \u03b2-chain (aV\u03b25) antibody. Results suggest aV\u03b1 does not induce gene expression changes, whereas aV\u03b2 activates a transcriptional program that mimics positive thymic selection.", "type": "Expression profiling by array", "pubmed_id": "15661827", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1448", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1565", "description": "cultured overnight", "sample_id": [ "GSM24449", "GSM24450", "GSM24451", "GSM24452", "GSM24453", "GSM24454" ], "type": "protocol", "id": "GDS1565_1" }, { "dataset_id": "GDS1565", "description": "freshly isolated", "sample_id": [ "GSM24455", "GSM24456" ], "type": "protocol", "id": "GDS1565_2" }, { "dataset_id": "GDS1565", "description": "control", "sample_id": [ "GSM24449", "GSM24452", "GSM24455", "GSM24456" ], "type": "agent", "id": "GDS1565_3" }, { "dataset_id": "GDS1565", "description": "anti-alpha chain Ab (Valpha2)", "sample_id": [ "GSM24450", "GSM24453" ], "type": "agent", "id": "GDS1565_4" }, { "dataset_id": "GDS1565", "description": "anti-beta chain Ab (Vbeta5)", "sample_id": [ "GSM24451", "GSM24454" ], "type": "agent", "id": "GDS1565_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1565", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1565.tab", "compression": "gz" } ], [ [ "GDS1568.tab" ], { "title": "Fibroblast response to serum: time course", "description": "Analysis of fibroblasts at various time points up to 36 hours after serum stimulation. The fibroblast serum response represents a wound healing program; cancer progression is likened to wound healing gone awry. Results provide insight into the significance of the wound healing process in cancer.", "type": "Expression profiling by array", "pubmed_id": "14737219", "platform": "GPL2670", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "41088", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log2 ratio", "reference_series": "GSE3945", "order": "none", "update_date": "Dec 07 2006", "subsets": [ { "dataset_id": "GDS1568", "description": "untreated", "sample_id": [ "GSM90183", "GSM90184", "GSM90185" ], "type": "agent", "id": "GDS1568_1" }, { "dataset_id": "GDS1568", "description": "serum", "sample_id": [ "GSM90170", "GSM90171", "GSM90172", "GSM90173", "GSM90174", "GSM90175", "GSM90176", "GSM90177", "GSM90178", "GSM90179", "GSM90180", "GSM90181", "GSM90182", "GSM90186", "GSM90187" ], "type": "agent", "id": "GDS1568_2" }, { "dataset_id": "GDS1568", "description": "0 h", "sample_id": [ "GSM90183", "GSM90184", "GSM90185" ], "type": "time", "id": "GDS1568_3" }, { "dataset_id": "GDS1568", "description": "0.25 h", "sample_id": [ "GSM90187" ], "type": "time", "id": "GDS1568_4" }, { "dataset_id": "GDS1568", "description": "0.5 h", "sample_id": [ "GSM90171" ], "type": "time", "id": "GDS1568_5" }, { "dataset_id": "GDS1568", "description": "1 h", "sample_id": [ "GSM90177" ], "type": "time", "id": "GDS1568_6" }, { "dataset_id": "GDS1568", "description": "1.5 h", "sample_id": [ "GSM90179" ], "type": "time", "id": "GDS1568_7" }, { "dataset_id": "GDS1568", "description": "2 h", "sample_id": [ "GSM90175" ], "type": "time", "id": "GDS1568_8" }, { "dataset_id": "GDS1568", "description": "3 h", "sample_id": [ "GSM90174" ], "type": "time", "id": "GDS1568_9" }, { "dataset_id": "GDS1568", "description": "4 h", "sample_id": [ "GSM90176" ], "type": "time", "id": "GDS1568_10" }, { "dataset_id": "GDS1568", "description": "6 h", "sample_id": [ "GSM90178" ], "type": "time", "id": "GDS1568_11" }, { "dataset_id": "GDS1568", "description": "8 h", "sample_id": [ "GSM90172" ], "type": "time", "id": "GDS1568_12" }, { "dataset_id": "GDS1568", "description": "10 h", "sample_id": [ "GSM90180" ], "type": "time", "id": "GDS1568_13" }, { "dataset_id": "GDS1568", "description": "12 h", "sample_id": [ "GSM90181" ], "type": "time", "id": "GDS1568_14" }, { "dataset_id": "GDS1568", "description": "16 h", "sample_id": [ "GSM90173" ], "type": "time", "id": "GDS1568_15" }, { "dataset_id": "GDS1568", "description": "20 h", "sample_id": [ "GSM90186" ], "type": "time", "id": "GDS1568_16" }, { "dataset_id": "GDS1568", "description": "24 h", "sample_id": [ "GSM90170" ], "type": "time", "id": "GDS1568_17" }, { "dataset_id": "GDS1568", "description": "36 h", "sample_id": [ "GSM90182" ], "type": "time", "id": "GDS1568_18" } ], "taxid": "9606", "genes": 33898, "aggregation_function": "mean", "name": "GDS1568", "version": 1.0, "instances": "18", "variables": 33901, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1568.tab", "compression": "gz" } ], [ [ "GDS157.tab" ], { "title": "Type 2 diabetes and insulin resistance (HuGeneFL)", "description": "Analysis of gene expression in pooled vastus lateralis muscle samples from insulin-sensitive and insulin-resistant equally obese, non-diabetic Pima Indians. A search for susceptibility genes for type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "12436343", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE121", "order": "none", "update_date": "Mar 25 2003", "subsets": [ { "dataset_id": "GDS157", "description": "insulin resistant", "sample_id": [ "GSM2289", "GSM2294", "GSM2299", "GSM2304", "GSM2309" ], "type": "metabolism", "id": "GDS157_1" }, { "dataset_id": "GDS157", "description": "insulin sensitive", "sample_id": [ "GSM2313", "GSM2318", "GSM2323", "GSM2328", "GSM2333" ], "type": "metabolism", "id": "GDS157_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS157", "version": 1.0, "instances": "10", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS157.tab", "compression": "gz" } ], [ [ "GDS1571.tab" ], { "title": "haa1 null mutant response to copper availability", "description": "Expression profiling of haa1 null mutants cultured in the presence of 100 uM copper sulfate or 100 uM bathocuproine sulfonate, a copper chelator. Haa1 is a homolog of Ace1, a copper-binding transcription factor. Results provide insight into the function of Haa1.", "type": "Expression profiling by array", "pubmed_id": "11504737", "platform": "GPL65", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE3502", "order": "none", "update_date": "Jan 05 2007", "subsets": [ { "dataset_id": "GDS1571", "description": "low copper", "sample_id": [ "GSM79999", "GSM80000" ], "type": "protocol", "id": "GDS1571_1" }, { "dataset_id": "GDS1571", "description": "high copper", "sample_id": [ "GSM80001", "GSM80002" ], "type": "protocol", "id": "GDS1571_2" } ], "taxid": "4932", "genes": 6361, "aggregation_function": "mean", "name": "GDS1571", "version": 1.0, "instances": "4", "variables": 6363, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1571.tab", "compression": "gz" } ], [ [ "GDS1572.tab" ], { "title": "Embryonic kidney: ureteric bud and metanephric mesenchyme (RG-U34A)", "description": "Analysis of ureteric buds (UBs) and metanephric mesenchyme (MM) from E13.5 kidneys. UB-secreted factors induce conversion of adjacent MM cells into nephrons. Results identify as potential regulators a set of 20 secreted molecules specific to the UB and conserved between species.", "type": "Expression profiling by array", "pubmed_id": "15917337", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1983", "order": "none", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS1572", "description": "ureteric bud", "sample_id": [ "GSM35281", "GSM35282" ], "type": "tissue", "id": "GDS1572_1" }, { "dataset_id": "GDS1572", "description": "metanephric mesenchyme", "sample_id": [ "GSM35283", "GSM35284" ], "type": "tissue", "id": "GDS1572_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1572", "version": 1.0, "instances": "4", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1572.tab", "compression": "gz" } ], [ [ "GDS1579.tab" ], { "title": "Endotoxin effect on leukocytes: time course (U133 2.0)", "description": "Analysis of leukocytes from 6 healthy subjects intravenously administered bacterial endotoxin. Leukocytes examined at various time points up to 6 hours post-infusion. Results provide insight into the molecular mechanisms involved in the propagation and resolution of the inflammatory response.", "type": "Expression profiling by array", "pubmed_id": [ "16136080", "20233835" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3284", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1579", "description": "subject 1", "sample_id": [ "GSM75559", "GSM75555", "GSM75566" ], "type": "individual", "id": "GDS1579_1" }, { "dataset_id": "GDS1579", "description": "subject 2", "sample_id": [ "GSM75560", "GSM75556", "GSM75567" ], "type": "individual", "id": "GDS1579_2" }, { "dataset_id": "GDS1579", "description": "subject 3", "sample_id": [ "GSM75565", "GSM75569", "GSM75568" ], "type": "individual", "id": "GDS1579_3" }, { "dataset_id": "GDS1579", "description": "subject 4", "sample_id": [ "GSM75557", "GSM75558", "GSM75561" ], "type": "individual", "id": "GDS1579_4" }, { "dataset_id": "GDS1579", "description": "subject 5", "sample_id": [ "GSM75563", "GSM75552", "GSM75562" ], "type": "individual", "id": "GDS1579_5" }, { "dataset_id": "GDS1579", "description": "subject 6", "sample_id": [ "GSM75553", "GSM75554", "GSM75564" ], "type": "individual", "id": "GDS1579_6" }, { "dataset_id": "GDS1579", "description": "control", "sample_id": [ "GSM75559", "GSM75560", "GSM75565", "GSM75557", "GSM75563", "GSM75553" ], "type": "agent", "id": "GDS1579_7" }, { "dataset_id": "GDS1579", "description": "endotoxin", "sample_id": [ "GSM75555", "GSM75556", "GSM75569", "GSM75558", "GSM75552", "GSM75554", "GSM75566", "GSM75567", "GSM75568", "GSM75561", "GSM75562", "GSM75564" ], "type": "agent", "id": "GDS1579_8" }, { "dataset_id": "GDS1579", "description": "0 h", "sample_id": [ "GSM75559", "GSM75560", "GSM75565", "GSM75557", "GSM75563", "GSM75553" ], "type": "time", "id": "GDS1579_9" }, { "dataset_id": "GDS1579", "description": "2 h", "sample_id": [ "GSM75555", "GSM75556", "GSM75569", "GSM75558", "GSM75552", "GSM75554" ], "type": "time", "id": "GDS1579_10" }, { "dataset_id": "GDS1579", "description": "6 h", "sample_id": [ "GSM75566", "GSM75567", "GSM75568", "GSM75561", "GSM75562", "GSM75564" ], "type": "time", "id": "GDS1579_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1579", "version": 1.0, "instances": "18", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1579.tab", "compression": "gz" } ], [ [ "GDS158.tab" ], { "title": "Type 2 diabetes and insulin resistance (Hu35k-A)", "description": "Analysis of gene expression in pooled vastus lateralis muscle samples from insulin-sensitive and insulin-resistant equally obese, non-diabetic Pima Indians. A search for susceptibility genes for type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "12436343", "platform": "GPL98", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8934", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE121", "order": "none", "update_date": "Mar 25 2003", "subsets": [ { "dataset_id": "GDS158", "description": "insulin resistant", "sample_id": [ "GSM2285", "GSM2290", "GSM2295", "GSM2300", "GSM2305" ], "type": "metabolism", "id": "GDS158_1" }, { "dataset_id": "GDS158", "description": "insulin sensitive", "sample_id": [ "GSM2310", "GSM2314", "GSM2319", "GSM2324", "GSM2329" ], "type": "metabolism", "id": "GDS158_2" } ], "taxid": "9606", "genes": 6943, "aggregation_function": "mean", "name": "GDS158", "version": 1.0, "instances": "10", "variables": 6945, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS158.tab", "compression": "gz" } ], [ [ "GDS1580.tab" ], { "title": "Lens epithelium-derived growth factor knockdown", "description": "Expression profiling of 293T cells depleted for lens epithelium-derived growth factor (LEDGF/p75). LEDGF/p75 binds to HIV integrase. Results identify LEDGF/p75 regulated genes, which may be preferential targets of HIV integration.", "type": "Expression profiling by array", "pubmed_id": "16311605", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3485", "order": "none", "update_date": "Jan 10 2007", "subsets": [ { "dataset_id": "GDS1580", "description": "control", "sample_id": [ "GSM78972", "GSM78973", "GSM78974", "GSM78975" ], "type": "protocol", "id": "GDS1580_1" }, { "dataset_id": "GDS1580", "description": "LEDGF knockdown", "sample_id": [ "GSM78968", "GSM78969", "GSM78970", "GSM78971" ], "type": "protocol", "id": "GDS1580_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1580", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1580.tab", "compression": "gz" } ], [ [ "GDS1581.tab" ], { "title": "Embryonic kidney: ureteric bud and metanephric mesenchyme (RG-U34B)", "description": "Analysis of ureteric buds (UBs) and metanephric mesenchyme (MM) from E13.5 kidneys. UB-secreted factors induce conversion of adjacent MM cells into nephrons. Results identify as potential regulators a set of 20 secreted molecules specific to the UB and conserved between species.", "type": "Expression profiling by array", "pubmed_id": "15917337", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1983", "order": "none", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS1581", "description": "ureteric bud", "sample_id": [ "GSM35286", "GSM35287" ], "type": "tissue", "id": "GDS1581_1" }, { "dataset_id": "GDS1581", "description": "metanephric mesenchyme", "sample_id": [ "GSM35288", "GSM35289" ], "type": "tissue", "id": "GDS1581_2" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS1581", "version": 1.0, "instances": "4", "variables": 7620, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1581.tab", "compression": "gz" } ], [ [ "GDS1582.tab" ], { "title": "Embryonic kidney: ureteric bud and metanephric mesenchyme (RG-U34C)", "description": "Analysis of ureteric buds (UBs) and metanephric mesenchyme (MM) from E13.5 kidneys. UB-secreted factors induce conversion of adjacent MM cells into nephrons. Results identify as potential regulators a set of 20 secreted molecules specific to the UB and conserved between species.", "type": "Expression profiling by array", "pubmed_id": "15917337", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1983", "order": "none", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS1582", "description": "ureteric bud", "sample_id": [ "GSM35290", "GSM35291" ], "type": "tissue", "id": "GDS1582_1" }, { "dataset_id": "GDS1582", "description": "metanephric mesenchyme", "sample_id": [ "GSM35292", "GSM35293" ], "type": "tissue", "id": "GDS1582_2" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS1582", "version": 1.0, "instances": "4", "variables": 7584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1582.tab", "compression": "gz" } ], [ [ "GDS1583.tab" ], { "title": "Embryonic kidney: ureteric bud and metanephric mesenchyme (MOE430 2.0)", "description": "Analysis of ureteric bud (UB) tips and stalks and metanephric mesenchyme (MM) from E12.5 kidneys. UB-secreted factors induce conversion of adjacent MM cells into nephrons. Results identify as potential regulators a set of 20 secreted molecules specific to the UB and conserved between species.", "type": "Expression profiling by array", "pubmed_id": "15917337", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1983", "order": "none", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS1583", "description": "ureteric bud tip", "sample_id": [ "GSM35257", "GSM35258" ], "type": "tissue", "id": "GDS1583_1" }, { "dataset_id": "GDS1583", "description": "ureteric bud stalk", "sample_id": [ "GSM35259", "GSM35260" ], "type": "tissue", "id": "GDS1583_2" }, { "dataset_id": "GDS1583", "description": "metanephric mesenchyme", "sample_id": [ "GSM35261", "GSM35262" ], "type": "tissue", "id": "GDS1583_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1583", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1583.tab", "compression": "gz" } ], [ [ "GDS1584.tab" ], { "title": "Oral squamous cell carcinoma", "description": "Analysis of oral squamous cell carcinoma (OSCC) cells from 16 patients. OSCC cells isolated from tumors by laser capture microdissection. Results identify a strong correlation between gene expression profile and tumor invasiveness in OSCC.", "type": "Expression profiling by array", "pubmed_id": "15381369", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE3524", "order": "none", "update_date": "Jan 11 2007", "subsets": [ { "dataset_id": "GDS1584", "description": "normal", "sample_id": [ "GSM80476", "GSM80477", "GSM80520", "GSM80521" ], "type": "disease state", "id": "GDS1584_1" }, { "dataset_id": "GDS1584", "description": "carcinoma", "sample_id": [ "GSM80460", "GSM80461", "GSM80462", "GSM80463", "GSM80464", "GSM80465", "GSM80466", "GSM80467", "GSM80468", "GSM80469", "GSM80470", "GSM80471", "GSM80472", "GSM80473", "GSM80474", "GSM80475" ], "type": "disease state", "id": "GDS1584_2" }, { "dataset_id": "GDS1584", "description": "TNM staging not applicable", "sample_id": [ "GSM80476", "GSM80477", "GSM80520", "GSM80521" ], "type": "other", "id": "GDS1584_3" }, { "dataset_id": "GDS1584", "description": "T1N2bM0", "sample_id": [ "GSM80463" ], "type": "other", "id": "GDS1584_4" }, { "dataset_id": "GDS1584", "description": "T2N0M0", "sample_id": [ "GSM80460", "GSM80462", "GSM80465", "GSM80466", "GSM80472" ], "type": "other", "id": "GDS1584_5" }, { "dataset_id": "GDS1584", "description": "T3N2bM0", "sample_id": [ "GSM80468" ], "type": "other", "id": "GDS1584_6" }, { "dataset_id": "GDS1584", "description": "T4N0M0", "sample_id": [ "GSM80469", "GSM80470", "GSM80473" ], "type": "other", "id": "GDS1584_7" }, { "dataset_id": "GDS1584", "description": "T4N1M0", "sample_id": [ "GSM80461", "GSM80464" ], "type": "other", "id": "GDS1584_8" }, { "dataset_id": "GDS1584", "description": "T4N2bM0", "sample_id": [ "GSM80467", "GSM80471" ], "type": "other", "id": "GDS1584_9" }, { "dataset_id": "GDS1584", "description": "T4N2M0", "sample_id": [ "GSM80475" ], "type": "other", "id": "GDS1584_10" }, { "dataset_id": "GDS1584", "description": "T4N3M0", "sample_id": [ "GSM80474" ], "type": "other", "id": "GDS1584_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1584", "version": 1.0, "instances": "20", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1584.tab", "compression": "gz" } ], [ [ "GDS1585.tab" ], { "title": "Follicular dendritic cell enriched splenocytes (MG U74A)", "description": "Analysis of follicular dendritic cell (FDCs) enriched splenocytes. FDCs are important in the formation of lymphoid germinal centers (GCs), where rapid B-cell proliferation and differentiation occur. Results identify transcripts that are overrepresented in cells associated with FDC networks in GCs.", "type": "Expression profiling by array", "pubmed_id": "15843551", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2123", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1585", "description": "follicular dendritic cell-enriched splenocytes", "sample_id": [ "GSM38297", "GSM38298", "GSM38299" ], "type": "cell type", "id": "GDS1585_1" }, { "dataset_id": "GDS1585", "description": "follicular dendritic cell-depleted splenocytes", "sample_id": [ "GSM38295", "GSM38296" ], "type": "cell type", "id": "GDS1585_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1585", "version": 1.0, "instances": "5", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1585.tab", "compression": "gz" } ], [ [ "GDS1593.tab" ], { "title": "p38 inhibitor PD169316 effect on embryonic stem derived differentiated cells (U74A Version 1)", "description": "Analysis of embryonic stem cells differentiated in the presence of PD169316, an inhibitor of p38 that blocks apoptosis without altering differentiation. Results identify gene families whose transcriptional regulation correlates with cell fate: differentiation with or without apoptosis.", "type": "Expression profiling by array", "pubmed_id": [ "16311515", "18437159" ], "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2042", "order": "none", "update_date": "Jun 07 2006", "subsets": [ { "dataset_id": "GDS1593", "description": "D4", "sample_id": [ "GSM37104", "GSM37105" ], "type": "cell line", "id": "GDS1593_1" }, { "dataset_id": "GDS1593", "description": "S1", "sample_id": [ "GSM37106", "GSM37107", "GSM37108", "GSM37109" ], "type": "cell line", "id": "GDS1593_2" }, { "dataset_id": "GDS1593", "description": "untreated", "sample_id": [ "GSM37104", "GSM37106", "GSM37107" ], "type": "agent", "id": "GDS1593_3" }, { "dataset_id": "GDS1593", "description": "PD169316", "sample_id": [ "GSM37105", "GSM37108", "GSM37109" ], "type": "agent", "id": "GDS1593_4" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS1593", "version": 1.0, "instances": "6", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1593.tab", "compression": "gz" } ], [ [ "GDS1596.tab" ], { "title": "p38 inhibitor PD169316 effect on embryonic stem derived differentiated cells (U74 Version 2)", "description": "Analysis of embryonic stem cells differentiated in the presence of PD169316, an inhibitor of p38 that blocks apoptosis without altering differentiation. Results identify gene families whose transcriptional regulation correlates with cell fate: differentiation with or without apoptosis.", "type": "Expression profiling by array", "pubmed_id": [ "16311515", "18437159" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2042", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1596", "description": "untreated", "sample_id": [ "GSM37111", "GSM37112" ], "type": "agent", "id": "GDS1596_1" }, { "dataset_id": "GDS1596", "description": "PD169316", "sample_id": [ "GSM37113", "GSM37114" ], "type": "agent", "id": "GDS1596_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1596", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1596.tab", "compression": "gz" } ], [ [ "GDS1597.tab" ], { "title": "Coronary artery atherosclerosis", "description": "Analysis of 51 coronary artery segments from the explanted hearts of 22 cardiac patients. Results provide insight into the pathogenesis and progression of atherosclerotic disease.", "type": "Expression profiling by array", "pubmed_id": "15942018", "platform": "GPL1790", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20433", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "51", "value_type": "log2 ratio", "reference_series": "GSE2143", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS1597", "description": "patient 1", "sample_id": [ "GSM38712" ], "type": "individual", "id": "GDS1597_1" }, { "dataset_id": "GDS1597", "description": "patient 2", "sample_id": [ "GSM38713", "GSM38714", "GSM38715", "GSM38716" ], "type": "individual", "id": "GDS1597_2" }, { "dataset_id": "GDS1597", "description": "patient 3", "sample_id": [ "GSM38717", "GSM38718", "GSM38719", "GSM38720", "GSM38721" ], "type": "individual", "id": "GDS1597_3" }, { "dataset_id": "GDS1597", "description": "patient 4", "sample_id": [ "GSM38722", "GSM38723", "GSM38724" ], "type": "individual", "id": "GDS1597_4" }, { "dataset_id": "GDS1597", "description": "patient 5", "sample_id": [ "GSM38725", "GSM38726", "GSM38727" ], "type": "individual", "id": "GDS1597_5" }, { "dataset_id": "GDS1597", "description": "patient 6", "sample_id": [ "GSM38728", "GSM38729", "GSM38730" ], "type": "individual", "id": "GDS1597_6" }, { "dataset_id": "GDS1597", "description": "patient 7", "sample_id": [ "GSM38731", "GSM38732" ], "type": "individual", "id": "GDS1597_7" }, { "dataset_id": "GDS1597", "description": "patient 8", "sample_id": [ "GSM38733", "GSM38734" ], "type": "individual", "id": "GDS1597_8" }, { "dataset_id": "GDS1597", "description": "patient 9", "sample_id": [ "GSM38735" ], "type": "individual", "id": "GDS1597_9" }, { "dataset_id": "GDS1597", "description": "patient 10", "sample_id": [ "GSM38736", "GSM38737" ], "type": "individual", "id": "GDS1597_10" }, { "dataset_id": "GDS1597", "description": "patient 11", "sample_id": [ "GSM38738", "GSM38739", "GSM38740" ], "type": "individual", "id": "GDS1597_11" }, { "dataset_id": "GDS1597", "description": "patient 12", "sample_id": [ "GSM38741" ], "type": "individual", "id": "GDS1597_12" }, { "dataset_id": "GDS1597", "description": "patient 13", "sample_id": [ "GSM38742" ], "type": "individual", "id": "GDS1597_13" }, { "dataset_id": "GDS1597", "description": "patient 14", "sample_id": [ "GSM38743", "GSM38744", "GSM38745" ], "type": "individual", "id": "GDS1597_14" }, { "dataset_id": "GDS1597", "description": "patient 15", "sample_id": [ "GSM38746", "GSM38747", "GSM38748" ], "type": "individual", "id": "GDS1597_15" }, { "dataset_id": "GDS1597", "description": "patient 16", "sample_id": [ "GSM38749" ], "type": "individual", "id": "GDS1597_16" }, { "dataset_id": "GDS1597", "description": "patient 17", "sample_id": [ "GSM38750", "GSM38751" ], "type": "individual", "id": "GDS1597_17" }, { "dataset_id": "GDS1597", "description": "patient 18", "sample_id": [ "GSM38752", "GSM38753", "GSM38754", "GSM38755" ], "type": "individual", "id": "GDS1597_18" }, { "dataset_id": "GDS1597", "description": "patient 19", "sample_id": [ "GSM38756", "GSM38757" ], "type": "individual", "id": "GDS1597_19" }, { "dataset_id": "GDS1597", "description": "patient 20", "sample_id": [ "GSM38758", "GSM38759" ], "type": "individual", "id": "GDS1597_20" }, { "dataset_id": "GDS1597", "description": "patient 21", "sample_id": [ "GSM38760" ], "type": "individual", "id": "GDS1597_21" }, { "dataset_id": "GDS1597", "description": "patient 22", "sample_id": [ "GSM38761", "GSM38762" ], "type": "individual", "id": "GDS1597_22" } ], "taxid": "9606", "genes": 19590, "aggregation_function": "mean", "name": "GDS1597", "version": 1.0, "instances": "51", "variables": 19592, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1597.tab", "compression": "gz" } ], [ [ "GDS1599.tab" ], { "title": "Follicular dendritic cell enriched splenocytes (MG U74B)", "description": "Analysis of follicular dendritic cell (FDCs) enriched splenocytes. FDCs are important in the formation of lymphoid germinal centers (GCs), where rapid B-cell proliferation and differentiation occur. Results identify transcripts that are overrepresented in cells associated with FDC networks in GCs.", "type": "Expression profiling by array", "pubmed_id": "15843551", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2123", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1599", "description": "follicular dendritic cell-enriched splenocytes", "sample_id": [ "GSM38300", "GSM38301" ], "type": "cell type", "id": "GDS1599_1" }, { "dataset_id": "GDS1599", "description": "follicular dendritic cell-depleted splenocytes", "sample_id": [ "GSM38302", "GSM38303" ], "type": "cell type", "id": "GDS1599_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1599", "version": 1.0, "instances": "4", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1599.tab", "compression": "gz" } ], [ [ "GDS16.tab" ], { "title": "Heat shock from 25\u00b0C to 37\u00b0C time course", "description": "Heat shock from 25\u00b0C to 37\u00b0C. Samples collected at several time points up to 80 minutes. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL51", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS16", "description": "5 minute", "sample_id": [ "GSM854" ], "type": "time", "id": "GDS16_1" }, { "dataset_id": "GDS16", "description": "10 minute", "sample_id": [ "GSM855" ], "type": "time", "id": "GDS16_2" }, { "dataset_id": "GDS16", "description": "15 minute", "sample_id": [ "GSM856" ], "type": "time", "id": "GDS16_3" }, { "dataset_id": "GDS16", "description": "20 minute", "sample_id": [ "GSM857", "GSM864" ], "type": "time", "id": "GDS16_4" }, { "dataset_id": "GDS16", "description": "40 minute", "sample_id": [ "GSM865" ], "type": "time", "id": "GDS16_5" }, { "dataset_id": "GDS16", "description": "60 minute", "sample_id": [ "GSM868" ], "type": "time", "id": "GDS16_6" }, { "dataset_id": "GDS16", "description": "80 minute", "sample_id": [ "GSM872" ], "type": "time", "id": "GDS16_7" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS16", "version": 1.0, "instances": "8", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS16.tab", "compression": "gz" } ], [ [ "GDS160.tab" ], { "title": "Type 2 diabetes and insulin resistance (Hu35k-B)", "description": "Analysis of gene expression in pooled vastus lateralis muscle samples from insulin-sensitive and insulin-resistant equally obese, non-diabetic Pima Indians. A search for susceptibility genes for type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "12436343", "platform": "GPL99", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8924", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE121", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS160", "description": "insulin sensitive", "sample_id": [ "GSM2284", "GSM2315", "GSM2320", "GSM2325", "GSM2330" ], "type": "metabolism", "id": "GDS160_1" }, { "dataset_id": "GDS160", "description": "insulin resistant", "sample_id": [ "GSM2286", "GSM2291", "GSM2296", "GSM2301", "GSM2306" ], "type": "metabolism", "id": "GDS160_2" } ], "taxid": "9606", "genes": 8031, "aggregation_function": "mean", "name": "GDS160", "version": 1.0, "instances": "10", "variables": 8033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS160.tab", "compression": "gz" } ], [ [ "GDS1600.tab" ], { "title": "Follicular dendritic cell enriched splenocytes (MG U74C)", "description": "Analysis of follicular dendritic cell (FDCs) enriched splenocytes. FDCs are important in the formation of lymphoid germinal centers (GCs), where rapid B-cell proliferation and differentiation occur. Results identify transcripts that are overrepresented in cells associated with FDC networks in GCs.", "type": "Expression profiling by array", "pubmed_id": "15843551", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2123", "order": "none", "update_date": "Jun 07 2006", "subsets": [ { "dataset_id": "GDS1600", "description": "follicular dendritic cell-enriched splenocytes", "sample_id": [ "GSM38306", "GSM38307", "GSM38308" ], "type": "cell type", "id": "GDS1600_1" }, { "dataset_id": "GDS1600", "description": "follicular dendritic cell-depleted splenocytes", "sample_id": [ "GSM38304", "GSM38305" ], "type": "cell type", "id": "GDS1600_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1600", "version": 1.0, "instances": "5", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1600.tab", "compression": "gz" } ], [ [ "GDS1604.tab" ], { "title": "Ionizing radiation effect on monocytic leukemia cells", "description": "Analysis of leukemia THP-1 moncytes exposed to ionizing radiation (IR). IR exposure is associated with thrombotic vascular occlusion. Thrombosis in cancer is associated with poor prognosis. Results provide insight into the effect of IR on the expression of tissue factor, an activator of coagulation.", "type": "Expression profiling by array", "pubmed_id": "17640852", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4110", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1604", "description": "untreated", "sample_id": [ "GSM93961", "GSM93962", "GSM93968", "GSM93969" ], "type": "other", "id": "GDS1604_1" }, { "dataset_id": "GDS1604", "description": "irradiated", "sample_id": [ "GSM93958", "GSM93964", "GSM93967", "GSM93973" ], "type": "other", "id": "GDS1604_2" }, { "dataset_id": "GDS1604", "description": "0d post IR", "sample_id": [ "GSM93961", "GSM93962", "GSM93968", "GSM93969" ], "type": "time", "id": "GDS1604_3" }, { "dataset_id": "GDS1604", "description": "3d post IR", "sample_id": [ "GSM93973" ], "type": "time", "id": "GDS1604_4" }, { "dataset_id": "GDS1604", "description": "7d post IR", "sample_id": [ "GSM93958", "GSM93964", "GSM93967" ], "type": "time", "id": "GDS1604_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1604", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1604.tab", "compression": "gz" } ], [ [ "GDS1606.tab" ], { "title": "Dual specificity phosphatase 1-deficient spleen response to lipopolysaccharide", "description": "Analysis of spleens from dual specificity phosphatase 1 (DUSP1)-deficient mutants 6 hours after lipopolysaccharide (LPS) challenge. Mutants injected intraperitoneally with LPS. Results provide insight into the role of DUSP1 in the innate immune response to LPS endotoxin shock.", "type": "Expression profiling by array", "pubmed_id": "16380512", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3565", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1606", "description": "wild type", "sample_id": [ "GSM81927", "GSM81928", "GSM81929", "GSM81930", "GSM81931", "GSM81932" ], "type": "genotype/variation", "id": "GDS1606_1" }, { "dataset_id": "GDS1606", "description": "DUSP1 mutant", "sample_id": [ "GSM81921", "GSM81922", "GSM81923", "GSM81924", "GSM81925", "GSM81926" ], "type": "genotype/variation", "id": "GDS1606_2" }, { "dataset_id": "GDS1606", "description": "control", "sample_id": [ "GSM81921", "GSM81922", "GSM81923", "GSM81927", "GSM81928", "GSM81929" ], "type": "agent", "id": "GDS1606_3" }, { "dataset_id": "GDS1606", "description": "lipopolysaccharide", "sample_id": [ "GSM81924", "GSM81925", "GSM81926", "GSM81930", "GSM81931", "GSM81932" ], "type": "agent", "id": "GDS1606_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1606", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1606.tab", "compression": "gz" } ], [ [ "GDS1607.tab" ], { "title": "Muscle glycogen content effect on skeletal muscle", "description": "Analysis of skeletal muscles of MGSKO and GSL30 lines which lack or over-accumulate muscle glycogen, respectively. Liver was also analyzed in MGSKO to assess whether muscle glycogen loss has indirect effects on liver. The two largest glycogen stores in mammals are in skeletal muscle and liver.", "type": "Expression profiling by array", "pubmed_id": "16356168", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "count", "reference_series": "GSE2198", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1607", "description": "wildtype", "sample_id": [ "GSM40057", "GSM40058", "GSM40059", "GSM40065", "GSM40066", "GSM40067", "GSM40068", "GSM40072", "GSM40073", "GSM40074", "GSM40075", "GSM40076", "GSM40080", "GSM40081", "GSM40082", "GSM40083", "GSM40088", "GSM40956" ], "type": "genotype/variation", "id": "GDS1607_1" }, { "dataset_id": "GDS1607", "description": "MGSKO", "sample_id": [ "GSM40060", "GSM40061", "GSM40062", "GSM40063", "GSM40064", "GSM40069", "GSM40070", "GSM40071", "GSM40077", "GSM40078", "GSM40079" ], "type": "genotype/variation", "id": "GDS1607_2" }, { "dataset_id": "GDS1607", "description": "GSL30", "sample_id": [ "GSM40084", "GSM40085", "GSM40086", "GSM40087", "GSM40089" ], "type": "genotype/variation", "id": "GDS1607_3" }, { "dataset_id": "GDS1607", "description": "anterior tibialis", "sample_id": [ "GSM40057", "GSM40058", "GSM40059", "GSM40060", "GSM40061", "GSM40062", "GSM40063", "GSM40956" ], "type": "tissue", "id": "GDS1607_4" }, { "dataset_id": "GDS1607", "description": "medial gastrocnemius", "sample_id": [ "GSM40072", "GSM40073", "GSM40074", "GSM40075", "GSM40076", "GSM40077", "GSM40078", "GSM40079", "GSM40080", "GSM40081", "GSM40082", "GSM40083", "GSM40084", "GSM40085", "GSM40086", "GSM40087", "GSM40088", "GSM40089" ], "type": "tissue", "id": "GDS1607_5" }, { "dataset_id": "GDS1607", "description": "liver", "sample_id": [ "GSM40064", "GSM40065", "GSM40066", "GSM40067", "GSM40068", "GSM40069", "GSM40070", "GSM40071" ], "type": "tissue", "id": "GDS1607_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1607", "version": 1.0, "instances": "34", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1607.tab", "compression": "gz" } ], [ [ "GDS1608.tab" ], { "title": "Cocaine addiction effect on reward-related brain regions", "description": "Analysis of reward-related brain regions from Wistar males with restricted (1 h) or extended (6 h) daily access to cocaine. Escalated cocaine intake (ESC) developed in subjects with extended access. Results provide insight into molecular mechanisms underlying the transition to compulsive drug use.", "type": "Expression profiling by array", "pubmed_id": "16076954", "platform": "GPL88", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1322", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "63", "value_type": "count", "reference_series": "GSE3016", "order": "none", "update_date": "Aug 17 2006", "subsets": [ { "dataset_id": "GDS1608", "description": "nucleus accumbens", "sample_id": [ "GSM93813", "GSM93814", "GSM93815", "GSM93816", "GSM93817", "GSM93818", "GSM93819", "GSM93820", "GSM93821", "GSM93822", "GSM93823", "GSM93824" ], "type": "tissue", "id": "GDS1608_1" }, { "dataset_id": "GDS1608", "description": "amygdala", "sample_id": [ "GSM93825", "GSM93826", "GSM93827", "GSM93828", "GSM93829", "GSM93830", "GSM93831", "GSM93832", "GSM93833", "GSM93834", "GSM93835", "GSM93836" ], "type": "tissue", "id": "GDS1608_2" }, { "dataset_id": "GDS1608", "description": "lateral hypothalamus", "sample_id": [ "GSM93837", "GSM93838", "GSM93839", "GSM93840", "GSM93841", "GSM93842", "GSM93843", "GSM93844", "GSM93845", "GSM93846", "GSM93847", "GSM93848" ], "type": "tissue", "id": "GDS1608_3" }, { "dataset_id": "GDS1608", "description": "septum", "sample_id": [ "GSM93849", "GSM93850", "GSM93851", "GSM93852", "GSM93853", "GSM93854", "GSM93855", "GSM93856", "GSM93857" ], "type": "tissue", "id": "GDS1608_4" }, { "dataset_id": "GDS1608", "description": "ventral tegmental area", "sample_id": [ "GSM93858", "GSM93859", "GSM93860", "GSM93861", "GSM93862", "GSM93863", "GSM93864", "GSM93865", "GSM93866" ], "type": "tissue", "id": "GDS1608_5" }, { "dataset_id": "GDS1608", "description": "medial prefrontal cortex", "sample_id": [ "GSM93867", "GSM93868", "GSM93869", "GSM93870", "GSM93871", "GSM93872", "GSM93873", "GSM93874", "GSM93875" ], "type": "tissue", "id": "GDS1608_6" }, { "dataset_id": "GDS1608", "description": "control", "sample_id": [ "GSM93813", "GSM93814", "GSM93815", "GSM93816", "GSM93825", "GSM93826", "GSM93827", "GSM93828", "GSM93837", "GSM93838", "GSM93839", "GSM93840", "GSM93849", "GSM93850", "GSM93851", "GSM93858", "GSM93859", "GSM93860", "GSM93867", "GSM93868", "GSM93869" ], "type": "protocol", "id": "GDS1608_7" }, { "dataset_id": "GDS1608", "description": "1 h access", "sample_id": [ "GSM93817", "GSM93818", "GSM93819", "GSM93820", "GSM93829", "GSM93830", "GSM93831", "GSM93832", "GSM93841", "GSM93842", "GSM93843", "GSM93844", "GSM93852", "GSM93853", "GSM93854", "GSM93861", "GSM93862", "GSM93863", "GSM93870", "GSM93871", "GSM93872" ], "type": "protocol", "id": "GDS1608_8" }, { "dataset_id": "GDS1608", "description": "6 h access", "sample_id": [ "GSM93821", "GSM93822", "GSM93823", "GSM93824", "GSM93833", "GSM93834", "GSM93835", "GSM93836", "GSM93845", "GSM93846", "GSM93847", "GSM93848", "GSM93855", "GSM93856", "GSM93857", "GSM93864", "GSM93865", "GSM93866", "GSM93873", "GSM93874", "GSM93875" ], "type": "protocol", "id": "GDS1608_9" } ], "taxid": "10116", "genes": 800, "aggregation_function": "mean", "name": "GDS1608", "version": 1.0, "instances": "63", "variables": 803, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1608.tab", "compression": "gz" } ], [ [ "GDS1609.tab" ], { "title": "Inbred Long Sleep and Inbred Short Sleep model of ethanol sensitivity: cerebellum (MG-430A)", "description": "Comparison of cerebella of Inbred Long Sleep (ILS) and Inbred Short Sleep (ISS) animals. ILS animals are more sensitive than ISS animals to ethanol. Initial sensitivity to ethanol is a predictor of alcohol abuse. Results provide insight into the molecular basis of differential ethanol sensitivity.", "type": "Expression profiling by array", "pubmed_id": "16465594", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3071", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1609", "description": "Inbred Short Sleep", "sample_id": [ "GSM67184", "GSM67185" ], "type": "strain", "id": "GDS1609_1" }, { "dataset_id": "GDS1609", "description": "Inbred Long Sleep", "sample_id": [ "GSM67177", "GSM67181" ], "type": "strain", "id": "GDS1609_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1609", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1609.tab", "compression": "gz" } ], [ [ "GDS161.tab" ], { "title": "Type 2 diabetes and insulin resistance (Hu35k-C)", "description": "Analysis of gene expression in pooled vastus lateralis muscle samples from insulin-sensitive and insulin-resistant equally obese, non-diabetic Pima Indians. A search for susceptibility genes for type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "12436343", "platform": "GPL100", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8928", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE121", "order": "none", "update_date": "Mar 25 2003", "subsets": [ { "dataset_id": "GDS161", "description": "insulin resistant", "sample_id": [ "GSM2287", "GSM2292", "GSM2297", "GSM2302", "GSM2307" ], "type": "metabolism", "id": "GDS161_1" }, { "dataset_id": "GDS161", "description": "insulin sensitive", "sample_id": [ "GSM2311", "GSM2316", "GSM2321", "GSM2326", "GSM2331" ], "type": "metabolism", "id": "GDS161_2" } ], "taxid": "9606", "genes": 7843, "aggregation_function": "mean", "name": "GDS161", "version": 1.0, "instances": "10", "variables": 7845, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS161.tab", "compression": "gz" } ], [ [ "GDS1610.tab" ], { "title": "Inbred Long Sleep and Inbred Short Sleep model of ethanol sensitivity: cerebellum (MG-430B)", "description": "Comparison of cerebella of Inbred Long Sleep (ILS) and Inbred Short Sleep (ISS) animals. ILS animals are more sensitive than ISS animals to ethanol. Initial sensitivity to ethanol is a predictor of alcohol abuse. Results provide insight into the molecular basis of differential ethanol sensitivity.", "type": "Expression profiling by array", "pubmed_id": "16465594", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3071", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1610", "description": "Inbred Short Sleep", "sample_id": [ "GSM67193", "GSM67194" ], "type": "strain", "id": "GDS1610_1" }, { "dataset_id": "GDS1610", "description": "Inbred Long Sleep", "sample_id": [ "GSM67187", "GSM67192" ], "type": "strain", "id": "GDS1610_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1610", "version": 1.0, "instances": "4", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1610.tab", "compression": "gz" } ], [ [ "GDS1611.tab" ], { "title": "Nonsense-mediated mRNA decay factor upf1 null mutant response to global transcription inhibition: time course", "description": "Analysis of wild type and mutant upf1 strains up to 60 minutes after treatment with 10 ug/ml thiolutin, a global transcription inhibitor. Upf1 is an RNA helicase required for nonsense-mediated mRNA decay (NMD). Results identify genes with differential expression over time between the two strains.", "type": "Expression profiling by array", "pubmed_id": "17166056", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "transformed count", "reference_series": "GSE3076", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1611", "description": "wild type", "sample_id": [ "GSM67593", "GSM67594", "GSM67595", "GSM67596", "GSM67597", "GSM67598", "GSM67599", "GSM67600", "GSM67601", "GSM67602", "GSM67603", "GSM67604", "GSM67605", "GSM67606", "GSM67607", "GSM67608", "GSM67609", "GSM67610", "GSM67611", "GSM67612", "GSM67613", "GSM67614", "GSM67615", "GSM67616", "GSM67617", "GSM67618", "GSM67619", "GSM67620", "GSM67621", "GSM67622", "GSM67623", "GSM67624", "GSM67625", "GSM67626", "GSM67627", "GSM67628", "GSM67629", "GSM67630", "GSM67631", "GSM67632", "GSM67633", "GSM67634", "GSM67635", "GSM67636", "GSM67637", "GSM67638", "GSM67639", "GSM67640" ], "type": "genotype/variation", "id": "GDS1611_1" }, { "dataset_id": "GDS1611", "description": "upf1 null mutant", "sample_id": [ "GSM67545", "GSM67546", "GSM67547", "GSM67548", "GSM67549", "GSM67550", "GSM67551", "GSM67552", "GSM67553", "GSM67554", "GSM67555", "GSM67556", "GSM67557", "GSM67558", "GSM67559", "GSM67560", "GSM67561", "GSM67562", "GSM67563", "GSM67564", "GSM67565", "GSM67566", "GSM67567", "GSM67568", "GSM67569", "GSM67570", "GSM67571", "GSM67572", "GSM67573", "GSM67574", "GSM67575", "GSM67576", "GSM67577", "GSM67578", "GSM67579", "GSM67580", "GSM67581", "GSM67582", "GSM67583", "GSM67584", "GSM67585", "GSM67586", "GSM67587", "GSM67588", "GSM67589", "GSM67590", "GSM67591", "GSM67592" ], "type": "genotype/variation", "id": "GDS1611_2" }, { "dataset_id": "GDS1611", "description": "0 min", "sample_id": [ "GSM67545", "GSM67561", "GSM67577", "GSM67593", "GSM67609", "GSM67625" ], "type": "time", "id": "GDS1611_3" }, { "dataset_id": "GDS1611", "description": "2 min", "sample_id": [ "GSM67546", "GSM67562", "GSM67578", "GSM67594", "GSM67610", "GSM67626" ], "type": "time", "id": "GDS1611_4" }, { "dataset_id": "GDS1611", "description": "4 min", "sample_id": [ "GSM67547", "GSM67563", "GSM67579", "GSM67595", "GSM67611", "GSM67627" ], "type": "time", "id": "GDS1611_5" }, { "dataset_id": "GDS1611", "description": "6 min", "sample_id": [ "GSM67548", "GSM67564", "GSM67580", "GSM67596", "GSM67612", "GSM67628" ], "type": "time", "id": "GDS1611_6" }, { "dataset_id": "GDS1611", "description": "8 min", "sample_id": [ "GSM67549", "GSM67565", "GSM67581", "GSM67597", "GSM67613", "GSM67629" ], "type": "time", "id": "GDS1611_7" }, { "dataset_id": "GDS1611", "description": "10 min", "sample_id": [ "GSM67550", "GSM67566", "GSM67582", "GSM67598", "GSM67614", "GSM67630" ], "type": "time", "id": "GDS1611_8" }, { "dataset_id": "GDS1611", "description": "12 min", "sample_id": [ "GSM67551", "GSM67567", "GSM67583", "GSM67599", "GSM67615", "GSM67631" ], "type": "time", "id": "GDS1611_9" }, { "dataset_id": "GDS1611", "description": "15 min", "sample_id": [ "GSM67552", "GSM67568", "GSM67584", "GSM67600", "GSM67616", "GSM67632" ], "type": "time", "id": "GDS1611_10" }, { "dataset_id": "GDS1611", "description": "20 min", "sample_id": [ "GSM67553", "GSM67569", "GSM67585", "GSM67601", "GSM67617", "GSM67633" ], "type": "time", "id": "GDS1611_11" }, { "dataset_id": "GDS1611", "description": "25 min", "sample_id": [ "GSM67554", "GSM67570", "GSM67586", "GSM67602", "GSM67618", "GSM67634" ], "type": "time", "id": "GDS1611_12" }, { "dataset_id": "GDS1611", "description": "30 min", "sample_id": [ "GSM67555", "GSM67571", "GSM67587", "GSM67603", "GSM67619", "GSM67635" ], "type": "time", "id": "GDS1611_13" }, { "dataset_id": "GDS1611", "description": "35 min", "sample_id": [ "GSM67556", "GSM67572", "GSM67588", "GSM67604", "GSM67620", "GSM67636" ], "type": "time", "id": "GDS1611_14" }, { "dataset_id": "GDS1611", "description": "40 min", "sample_id": [ "GSM67557", "GSM67573", "GSM67589", "GSM67605", "GSM67621", "GSM67637" ], "type": "time", "id": "GDS1611_15" }, { "dataset_id": "GDS1611", "description": "45 min", "sample_id": [ "GSM67558", "GSM67574", "GSM67590", "GSM67606", "GSM67622", "GSM67638" ], "type": "time", "id": "GDS1611_16" }, { "dataset_id": "GDS1611", "description": "50 min", "sample_id": [ "GSM67559", "GSM67575", "GSM67591", "GSM67607", "GSM67623", "GSM67639" ], "type": "time", "id": "GDS1611_17" }, { "dataset_id": "GDS1611", "description": "60 min", "sample_id": [ "GSM67560", "GSM67576", "GSM67592", "GSM67608", "GSM67624", "GSM67640" ], "type": "time", "id": "GDS1611_18" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1611", "version": 1.0, "instances": "96", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1611.tab", "compression": "gz" } ], [ [ "GDS1612.tab" ], { "title": "Hypothalamoneurohypophyseal system response to dehydration", "description": "Analysis of the hypothalamoneurohypophyseal system (HNS) in fluid-deprived males. The HNS components examined were hypothalamic paraventricular and supraoptic nuclei and neurointermediate lobe of the pituitary. Results identify candidate genes of HNS activity and remodeling induced by dehydration.", "type": "Expression profiling by array", "pubmed_id": "16432224", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE4130", "order": "none", "update_date": "Aug 23 2006", "subsets": [ { "dataset_id": "GDS1612", "description": "control", "sample_id": [ "GSM69461", "GSM69462", "GSM69463", "GSM69464", "GSM69465", "GSM69475", "GSM69476", "GSM69477", "GSM69478", "GSM69479", "GSM69787", "GSM69788", "GSM69789", "GSM69790", "GSM69791" ], "type": "protocol", "id": "GDS1612_1" }, { "dataset_id": "GDS1612", "description": "dehydration", "sample_id": [ "GSM69268", "GSM69457", "GSM69458", "GSM69459", "GSM69460", "GSM69470", "GSM69471", "GSM69472", "GSM69473", "GSM69474", "GSM69782", "GSM69783", "GSM69784", "GSM69785", "GSM69786" ], "type": "protocol", "id": "GDS1612_2" }, { "dataset_id": "GDS1612", "description": "neurointermediate lobe", "sample_id": [ "GSM69782", "GSM69783", "GSM69784", "GSM69785", "GSM69786", "GSM69787", "GSM69788", "GSM69789", "GSM69790", "GSM69791" ], "type": "tissue", "id": "GDS1612_3" }, { "dataset_id": "GDS1612", "description": "supraoptic nucleus", "sample_id": [ "GSM69268", "GSM69457", "GSM69458", "GSM69459", "GSM69460", "GSM69461", "GSM69462", "GSM69463", "GSM69464", "GSM69465" ], "type": "tissue", "id": "GDS1612_4" }, { "dataset_id": "GDS1612", "description": "paraventricular nucleus", "sample_id": [ "GSM69470", "GSM69471", "GSM69472", "GSM69473", "GSM69474", "GSM69475", "GSM69476", "GSM69477", "GSM69478", "GSM69479" ], "type": "tissue", "id": "GDS1612_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1612", "version": 1.0, "instances": "30", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1612.tab", "compression": "gz" } ], [ [ "GDS1615.tab" ], { "title": "Ulcerative colitis and Crohn's disease comparison: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells (PBMCs) from Crohn's disease (CD) and ulcerative colitis (UC) patients. Results identify a PBMC expression signature that distinguishes between CD and UC, suggesting that diagnosis of these two inflammatory bowel diseases (IBD) using PBMCs is possible.", "type": "Expression profiling by array", "pubmed_id": "16436634", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "127", "value_type": "count", "reference_series": "GSE3365", "order": "none", "update_date": "Aug 24 2006", "subsets": [ { "dataset_id": "GDS1615", "description": "normal", "sample_id": [ "GSM76115", "GSM76116", "GSM76117", "GSM76118", "GSM76119", "GSM76120", "GSM76121", "GSM76122", "GSM76123", "GSM76124", "GSM76125", "GSM76126", "GSM76127", "GSM76128", "GSM76129", "GSM76130", "GSM76131", "GSM76132", "GSM76133", "GSM76134", "GSM76135", "GSM76136", "GSM76137", "GSM76138", "GSM76139", "GSM76140", "GSM76141", "GSM76142", "GSM76143", "GSM76144", "GSM76145", "GSM76146", "GSM76147", "GSM76148", "GSM76149", "GSM76150", "GSM76151", "GSM76152", "GSM76153", "GSM76154", "GSM76155", "GSM76156" ], "type": "disease state", "id": "GDS1615_1" }, { "dataset_id": "GDS1615", "description": "ulcerative colitis", "sample_id": [ "GSM76030", "GSM76031", "GSM76032", "GSM76033", "GSM76034", "GSM76035", "GSM76036", "GSM76037", "GSM76038", "GSM76039", "GSM76040", "GSM76041", "GSM76042", "GSM76043", "GSM76044", "GSM76045", "GSM76046", "GSM76047", "GSM76048", "GSM76049", "GSM76050", "GSM76051", "GSM76052", "GSM76053", "GSM76054", "GSM76055" ], "type": "disease state", "id": "GDS1615_2" }, { "dataset_id": "GDS1615", "description": "Crohn's disease", "sample_id": [ "GSM76056", "GSM76057", "GSM76058", "GSM76059", "GSM76060", "GSM76061", "GSM76062", "GSM76063", "GSM76064", "GSM76065", "GSM76066", "GSM76067", "GSM76068", "GSM76069", "GSM76070", "GSM76071", "GSM76072", "GSM76073", "GSM76074", "GSM76075", "GSM76076", "GSM76077", "GSM76078", "GSM76079", "GSM76080", "GSM76081", "GSM76082", "GSM76083", "GSM76084", "GSM76085", "GSM76086", "GSM76087", "GSM76088", "GSM76089", "GSM76090", "GSM76091", "GSM76092", "GSM76093", "GSM76094", "GSM76095", "GSM76096", "GSM76097", "GSM76098", "GSM76099", "GSM76100", "GSM76101", "GSM76102", "GSM76103", "GSM76104", "GSM76105", "GSM76106", "GSM76107", "GSM76108", "GSM76109", "GSM76110", "GSM76111", "GSM76112", "GSM76113", "GSM76114" ], "type": "disease state", "id": "GDS1615_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1615", "version": 1.0, "instances": "127", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1615.tab", "compression": "gz" } ], [ [ "GDS1616.tab" ], { "title": "Akt kinase constitutive activation effect on embryonic stem cells", "description": "Analysis of embryonic stem (ES) cells expressing a myristoylated, active form of Akt (myr-Akt) kinase. Myr-Akt expression maintains pluripotency of ES cells even in the absence of leukemia inhibitory factor (LIF). Results demonstrate Akt signaling is sufficient to maintain ES cell pluripotency.", "type": "Expression profiling by array", "pubmed_id": "16407845", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2516", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1616", "description": "untreated", "sample_id": [ "GSM45083", "GSM45085" ], "type": "agent", "id": "GDS1616_1" }, { "dataset_id": "GDS1616", "description": "LIF", "sample_id": [ "GSM45082", "GSM45084" ], "type": "agent", "id": "GDS1616_2" }, { "dataset_id": "GDS1616", "description": "control", "sample_id": [ "GSM45082", "GSM45083" ], "type": "cell line", "id": "GDS1616_3" }, { "dataset_id": "GDS1616", "description": "activated Akt", "sample_id": [ "GSM45084", "GSM45085" ], "type": "cell line", "id": "GDS1616_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1616", "version": 1.0, "instances": "4", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1616.tab", "compression": "gz" } ], [ [ "GDS1617.tab" ], { "title": "Motexafin gadolinium and zinc effect on Ramos B-cell lymphoma line", "description": "Analysis of Ramos B-cell lymphoma cultures following 4 hour treatment with anticancer agent motexafin gadolinium (MGd), zinc acetate (25 or 50 uM), or combinations of MGd and zinc. Results provide insight into the molecular changes that accompany the disruption of intracellular zinc homeostasis.", "type": "Expression profiling by array", "pubmed_id": "16357179", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2964", "order": "none", "update_date": "Jan 11 2007", "subsets": [ { "dataset_id": "GDS1617", "description": "control", "sample_id": [ "GSM64867", "GSM64868", "GSM64869" ], "type": "agent", "id": "GDS1617_1" }, { "dataset_id": "GDS1617", "description": "25uM zinc", "sample_id": [ "GSM64870", "GSM64871", "GSM64872" ], "type": "agent", "id": "GDS1617_2" }, { "dataset_id": "GDS1617", "description": "50uM zinc", "sample_id": [ "GSM64873", "GSM64874", "GSM64875" ], "type": "agent", "id": "GDS1617_3" }, { "dataset_id": "GDS1617", "description": "MGd", "sample_id": [ "GSM64876", "GSM64877", "GSM64878" ], "type": "agent", "id": "GDS1617_4" }, { "dataset_id": "GDS1617", "description": "MGd/25uM zinc", "sample_id": [ "GSM64879", "GSM64880", "GSM64881" ], "type": "agent", "id": "GDS1617_5" }, { "dataset_id": "GDS1617", "description": "MGd/50uM zinc", "sample_id": [ "GSM64882", "GSM64883", "GSM64884" ], "type": "agent", "id": "GDS1617_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1617", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1617.tab", "compression": "gz" } ], [ [ "GDS1618.tab" ], { "title": "Lymph node and tonsil comparison", "description": "Analysis of lymph node (sinuses) and tonsil (no sinuses), highly similar secondary lymphoid organs. Metastatic tumor cells are preferentially arrested in the lymph node sinuses. Results identify signature genes that are prime candidates for mediating adhesion of tumor cells to sinusoidal cells.", "type": "Expression profiling by array", "pubmed_id": "16440291", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2665", "order": "none", "update_date": "Aug 24 2006", "subsets": [ { "dataset_id": "GDS1618", "description": "tonsil", "sample_id": [ "GSM51381", "GSM51382", "GSM51383", "GSM51384", "GSM51385", "GSM51386", "GSM51387", "GSM51388", "GSM51389", "GSM51390" ], "type": "tissue", "id": "GDS1618_1" }, { "dataset_id": "GDS1618", "description": "lymph node", "sample_id": [ "GSM51371", "GSM51372", "GSM51373", "GSM51374", "GSM51375", "GSM51376", "GSM51377", "GSM51378", "GSM51379", "GSM51380" ], "type": "tissue", "id": "GDS1618_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1618", "version": 1.0, "instances": "20", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1618.tab", "compression": "gz" } ], [ [ "GDS162.tab" ], { "title": "Type 2 diabetes and insulin resistance (Hu35k-D)", "description": "Analysis of gene expression in pooled vastus lateralis muscle samples from insulin-sensitive and insulin-resistant equally obese, non-diabetic Pima Indians. A search for susceptibility genes for type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "12436343", "platform": "GPL101", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8928", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE121", "order": "none", "update_date": "Mar 25 2003", "subsets": [ { "dataset_id": "GDS162", "description": "insulin resistant", "sample_id": [ "GSM2288", "GSM2293", "GSM2298", "GSM2303", "GSM2308" ], "type": "metabolism", "id": "GDS162_1" }, { "dataset_id": "GDS162", "description": "insulin sensitive", "sample_id": [ "GSM2312", "GSM2317", "GSM2322", "GSM2327", "GSM2332" ], "type": "metabolism", "id": "GDS162_2" } ], "taxid": "9606", "genes": 7782, "aggregation_function": "mean", "name": "GDS162", "version": 1.0, "instances": "10", "variables": 7784, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS162.tab", "compression": "gz" } ], [ [ "GDS1620.tab" ], { "title": "Abiotic stress-inducing agents effect on suspension cell cultures", "description": "Analysis of suspension cell cultures subjected to various abiotic stress-inducing agents. Results indicate that expression of components of the phosphorylating respiratory chain and TCA cycle remained largely constant, but that of alternative components varied in response to the various treatments.", "type": "Expression profiling by array", "pubmed_id": [ "14730085", "16027974" ], "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE3709", "order": "none", "update_date": "Jun 15 2006", "subsets": [ { "dataset_id": "GDS1620", "description": "untreated", "sample_id": [ "GSM85639", "GSM85640", "GSM85641", "GSM85642", "GSM85653", "GSM85654" ], "type": "agent", "id": "GDS1620_1" }, { "dataset_id": "GDS1620", "description": "mannitol", "sample_id": [ "GSM85628" ], "type": "agent", "id": "GDS1620_2" }, { "dataset_id": "GDS1620", "description": "0.125 uM oligomycin", "sample_id": [ "GSM85629", "GSM85630" ], "type": "agent", "id": "GDS1620_3" }, { "dataset_id": "GDS1620", "description": "1.25 uM oligomycin", "sample_id": [ "GSM85631", "GSM85632" ], "type": "agent", "id": "GDS1620_4" }, { "dataset_id": "GDS1620", "description": "chitin", "sample_id": [ "GSM85633", "GSM85634" ], "type": "agent", "id": "GDS1620_5" }, { "dataset_id": "GDS1620", "description": "chloramphenicol", "sample_id": [ "GSM85635", "GSM85636" ], "type": "agent", "id": "GDS1620_6" }, { "dataset_id": "GDS1620", "description": "cold", "sample_id": [ "GSM85637", "GSM85638" ], "type": "agent", "id": "GDS1620_7" }, { "dataset_id": "GDS1620", "description": "hydrogen peroxide", "sample_id": [ "GSM85626", "GSM85627" ], "type": "agent", "id": "GDS1620_8" }, { "dataset_id": "GDS1620", "description": "flagellen", "sample_id": [ "GSM85643", "GSM85644" ], "type": "agent", "id": "GDS1620_9" }, { "dataset_id": "GDS1620", "description": "N2", "sample_id": [ "GSM85645", "GSM85646" ], "type": "agent", "id": "GDS1620_10" }, { "dataset_id": "GDS1620", "description": "rotenone", "sample_id": [ "GSM85647", "GSM85648" ], "type": "agent", "id": "GDS1620_11" }, { "dataset_id": "GDS1620", "description": "10 uM salicylic acid", "sample_id": [ "GSM85649", "GSM85650" ], "type": "agent", "id": "GDS1620_12" }, { "dataset_id": "GDS1620", "description": "100 uM salicylic acid", "sample_id": [ "GSM85651", "GSM85652" ], "type": "agent", "id": "GDS1620_13" }, { "dataset_id": "GDS1620", "description": "rotenone", "sample_id": [ "GSM85655", "GSM85656" ], "type": "agent", "id": "GDS1620_14" }, { "dataset_id": "GDS1620", "description": "norflurazon", "sample_id": [ "GSM85657", "GSM85658" ], "type": "agent", "id": "GDS1620_15" }, { "dataset_id": "GDS1620", "description": "chloramphenicol", "sample_id": [ "GSM85659", "GSM85660" ], "type": "agent", "id": "GDS1620_16" }, { "dataset_id": "GDS1620", "description": "cysteine", "sample_id": [ "GSM85661", "GSM85662" ], "type": "agent", "id": "GDS1620_17" }, { "dataset_id": "GDS1620", "description": "3 hours", "sample_id": [ "GSM85626", "GSM85627", "GSM85628", "GSM85629", "GSM85630", "GSM85631", "GSM85632", "GSM85633", "GSM85634", "GSM85635", "GSM85636", "GSM85637", "GSM85638", "GSM85639", "GSM85640", "GSM85641", "GSM85642", "GSM85643", "GSM85644", "GSM85645", "GSM85646", "GSM85647", "GSM85648", "GSM85649", "GSM85650", "GSM85651", "GSM85652" ], "type": "time", "id": "GDS1620_18" }, { "dataset_id": "GDS1620", "description": "12 hours", "sample_id": [ "GSM85653", "GSM85654", "GSM85655", "GSM85656", "GSM85657", "GSM85658", "GSM85659", "GSM85660", "GSM85661", "GSM85662" ], "type": "time", "id": "GDS1620_19" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1620", "version": 1.0, "instances": "37", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1620.tab", "compression": "gz" } ], [ [ "GDS1621.tab" ], { "title": "c-Jun N-terminal kinase pathway activation and suppression effect on aortic vascular smooth muscle cells", "description": "Analysis of aortic vascular smooth muscle cells following c-Jun N-terminal kinase (JNK) activation or JNK suppression with H202 treatment to induce oxidative stress (OS). OS is linked to abdominal aortic aneurysm (AAA) and activates JNK. Results provide insight into the role of JNK in AAA.", "type": "Expression profiling by array", "pubmed_id": "16311603", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2190", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1621", "description": "unstressed", "sample_id": [ "GSM39233", "GSM39301", "GSM39302" ], "type": "stress", "id": "GDS1621_1" }, { "dataset_id": "GDS1621", "description": "oxidative stress", "sample_id": [ "GSM39298", "GSM39299", "GSM39300" ], "type": "stress", "id": "GDS1621_2" }, { "dataset_id": "GDS1621", "description": "control", "sample_id": [ "GSM39233", "GSM39298" ], "type": "agent", "id": "GDS1621_3" }, { "dataset_id": "GDS1621", "description": "GFP control", "sample_id": [ "GSM39300", "GSM39302" ], "type": "agent", "id": "GDS1621_4" }, { "dataset_id": "GDS1621", "description": "dominant negative JNK1", "sample_id": [ "GSM39299" ], "type": "agent", "id": "GDS1621_5" }, { "dataset_id": "GDS1621", "description": "JNK1 activator", "sample_id": [ "GSM39301" ], "type": "agent", "id": "GDS1621_6" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1621", "version": 1.0, "instances": "6", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1621.tab", "compression": "gz" } ], [ [ "GDS1622.tab" ], { "title": "Arginine deprivation effect on tumorigenic hepatic cells", "description": "Analysis of neoplastic hepatic cells subjected to arginine deprivation. Results identify arginine responsive genes that become unresponsive to arginine in tumorigenic cells.", "type": "Expression profiling by array", "pubmed_id": "16961918", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2275", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1622", "description": "control", "sample_id": [ "GSM42161", "GSM42162", "GSM42163", "GSM42167", "GSM42168", "GSM42169" ], "type": "stress", "id": "GDS1622_1" }, { "dataset_id": "GDS1622", "description": "arginine deprivation", "sample_id": [ "GSM42164", "GSM42165", "GSM42166", "GSM42171", "GSM42173", "GSM42174" ], "type": "stress", "id": "GDS1622_2" }, { "dataset_id": "GDS1622", "description": "normal", "sample_id": [ "GSM42161", "GSM42162", "GSM42163", "GSM42164", "GSM42165", "GSM42166" ], "type": "cell type", "id": "GDS1622_3" }, { "dataset_id": "GDS1622", "description": "tumorigenic", "sample_id": [ "GSM42167", "GSM42168", "GSM42169", "GSM42171", "GSM42173", "GSM42174" ], "type": "cell type", "id": "GDS1622_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1622", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1622.tab", "compression": "gz" } ], [ [ "GDS1626.tab" ], { "title": "Environmental enrichment effect on hippocampus subjected to early-life seizures", "description": "Analysis of hippocampi of animals that were injected with kainic acid at postnatal day (P) 20 to induce early-life seizures and then housed in an enriched environment until P30. Results provide insight into the efficacy of environmental enrichment in reversing early-life seizure-induced changes.", "type": "Expression profiling by array", "pubmed_id": "16417873", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1833", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1626", "description": "control", "sample_id": [ "GSM32111", "GSM32112", "GSM32113", "GSM32117", "GSM32118", "GSM32119" ], "type": "agent", "id": "GDS1626_1" }, { "dataset_id": "GDS1626", "description": "kainic acid", "sample_id": [ "GSM32114", "GSM32115", "GSM32116", "GSM32120", "GSM32121", "GSM32122" ], "type": "agent", "id": "GDS1626_2" }, { "dataset_id": "GDS1626", "description": "control", "sample_id": [ "GSM32111", "GSM32112", "GSM32113", "GSM32114", "GSM32115", "GSM32116" ], "type": "protocol", "id": "GDS1626_3" }, { "dataset_id": "GDS1626", "description": "environmental enrichment", "sample_id": [ "GSM32117", "GSM32118", "GSM32119", "GSM32120", "GSM32121", "GSM32122" ], "type": "protocol", "id": "GDS1626_4" }, { "dataset_id": "GDS1626", "description": "control", "sample_id": [ "GSM32111", "GSM32112", "GSM32113", "GSM32117", "GSM32118", "GSM32119" ], "type": "disease state", "id": "GDS1626_5" }, { "dataset_id": "GDS1626", "description": "early-life seizures", "sample_id": [ "GSM32114", "GSM32115", "GSM32116", "GSM32120", "GSM32121", "GSM32122" ], "type": "disease state", "id": "GDS1626_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1626", "version": 1.0, "instances": "12", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1626.tab", "compression": "gz" } ], [ [ "GDS1627.tab" ], { "title": "Breast cancer cell lines response to chemotherapeutic drugs: time course", "description": "Analysis of 4 breast cell lines treated for up to 36 hrs with the chemotherapeutic agents 5-fluorouracil (5FU), doxorubicin (DOX), or etoposide (ETOP), a drug mechanistically similar to DOX. Expression profiles for DOX- and 5FU-treated cells were used to successfully predict the response to ETOP.", "type": "Expression profiling by array", "pubmed_id": "15598611", "platform": "GPL550", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20163", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "83", "value_type": "log2 ratio", "reference_series": "GSE1647", "order": "none", "update_date": "Aug 24 2006", "subsets": [ { "dataset_id": "GDS1627", "description": "HME-CC", "sample_id": [ "GSM11680", "GSM11685", "GSM11686", "GSM11688", "GSM11698", "GSM11699", "GSM11708", "GSM11710", "GSM11712", "GSM11732", "GSM11733", "GSM11735", "GSM11840", "GSM11842", "GSM11844", "GSM11846", "GSM11847", "GSM11860", "GSM11863", "GSM27946", "GSM27950" ], "type": "cell line", "id": "GDS1627_1" }, { "dataset_id": "GDS1627", "description": "MCF-7", "sample_id": [ "GSM11681", "GSM11687", "GSM11689", "GSM11693", "GSM11703", "GSM11704", "GSM11705", "GSM11709", "GSM11713", "GSM11720", "GSM11722", "GSM11725", "GSM11726", "GSM11727", "GSM11728", "GSM11730", "GSM11837", "GSM11838", "GSM11864", "GSM27947", "GSM27951" ], "type": "cell line", "id": "GDS1627_2" }, { "dataset_id": "GDS1627", "description": "ME16C", "sample_id": [ "GSM11683", "GSM11691", "GSM11694", "GSM11695", "GSM11697", "GSM11707", "GSM11714", "GSM11716", "GSM11721", "GSM11723", "GSM11734", "GSM11843", "GSM11845", "GSM11850", "GSM11851", "GSM11852", "GSM11861", "GSM11862", "GSM27945", "GSM27949" ], "type": "cell line", "id": "GDS1627_3" }, { "dataset_id": "GDS1627", "description": "ZR-75-1", "sample_id": [ "GSM11682", "GSM11684", "GSM11690", "GSM11692", "GSM11696", "GSM11706", "GSM11711", "GSM11715", "GSM11724", "GSM11729", "GSM11731", "GSM11746", "GSM11836", "GSM11839", "GSM11841", "GSM11849", "GSM11853", "GSM11854", "GSM11901", "GSM27948", "GSM27952" ], "type": "cell line", "id": "GDS1627_4" }, { "dataset_id": "GDS1627", "description": "sham", "sample_id": [ "GSM11706", "GSM11707", "GSM11708", "GSM11709", "GSM11710", "GSM11711", "GSM11712", "GSM11716", "GSM11720", "GSM11721", "GSM11725", "GSM11726", "GSM11729", "GSM11733", "GSM11735", "GSM11746", "GSM11837", "GSM11850", "GSM11851", "GSM11852", "GSM11853", "GSM11854", "GSM11863", "GSM11864" ], "type": "agent", "id": "GDS1627_5" }, { "dataset_id": "GDS1627", "description": "doxorubicin", "sample_id": [ "GSM11681", "GSM11682", "GSM11686", "GSM11687", "GSM11688", "GSM11689", "GSM11690", "GSM11693", "GSM11694", "GSM11695", "GSM11704", "GSM11727", "GSM11731", "GSM11732", "GSM11734", "GSM11836", "GSM11838", "GSM11839", "GSM11842", "GSM11843", "GSM11844", "GSM11846", "GSM11849", "GSM11860", "GSM11861", "GSM11862" ], "type": "agent", "id": "GDS1627_6" }, { "dataset_id": "GDS1627", "description": "5-fluorouracil", "sample_id": [ "GSM11680", "GSM11683", "GSM11684", "GSM11685", "GSM11691", "GSM11692", "GSM11696", "GSM11697", "GSM11698", "GSM11699", "GSM11703", "GSM11705", "GSM11713", "GSM11714", "GSM11715", "GSM11722", "GSM11723", "GSM11724", "GSM11728", "GSM11730", "GSM11840", "GSM11841", "GSM11845", "GSM11847", "GSM11901" ], "type": "agent", "id": "GDS1627_7" }, { "dataset_id": "GDS1627", "description": "etoposide", "sample_id": [ "GSM27945", "GSM27946", "GSM27947", "GSM27948", "GSM27949", "GSM27950", "GSM27951", "GSM27952" ], "type": "agent", "id": "GDS1627_8" }, { "dataset_id": "GDS1627", "description": "12 h", "sample_id": [ "GSM11680", "GSM11687", "GSM11692", "GSM11693", "GSM11694", "GSM11695", "GSM11697", "GSM11698", "GSM11703", "GSM11705", "GSM11706", "GSM11707", "GSM11708", "GSM11709", "GSM11714", "GSM11716", "GSM11720", "GSM11731", "GSM11732", "GSM11735", "GSM11839", "GSM11841", "GSM11844", "GSM11853", "GSM11901", "GSM27947", "GSM27949", "GSM27950", "GSM27952" ], "type": "time", "id": "GDS1627_9" }, { "dataset_id": "GDS1627", "description": "24 h", "sample_id": [ "GSM11715", "GSM11722", "GSM11723", "GSM11724", "GSM11726", "GSM11727", "GSM11729", "GSM11730", "GSM11733", "GSM11734", "GSM11746", "GSM11836", "GSM11837", "GSM11838", "GSM11840", "GSM11842", "GSM11845", "GSM11847", "GSM11849", "GSM11850", "GSM11851", "GSM11860", "GSM11861", "GSM11863" ], "type": "time", "id": "GDS1627_10" }, { "dataset_id": "GDS1627", "description": "36 h", "sample_id": [ "GSM11681", "GSM11682", "GSM11683", "GSM11684", "GSM11685", "GSM11686", "GSM11688", "GSM11689", "GSM11690", "GSM11691", "GSM11696", "GSM11699", "GSM11704", "GSM11710", "GSM11711", "GSM11712", "GSM11713", "GSM11721", "GSM11725", "GSM11728", "GSM11843", "GSM11846", "GSM11852", "GSM11854", "GSM11862", "GSM11864", "GSM27945", "GSM27946", "GSM27948", "GSM27951" ], "type": "time", "id": "GDS1627_11" } ], "taxid": "9606", "genes": 17807, "aggregation_function": "mean", "name": "GDS1627", "version": 1.0, "instances": "83", "variables": 17811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1627.tab", "compression": "gz" } ], [ [ "GDS1629.tab" ], { "title": "Immortalized suprachiasmatic nucleus cell line across circadian cycles: time course", "description": "Analysis of suprachiasmatic nucleus (SCN) immortalized cell line SCN2.2 at 6 hour intervals over 2 circadian cycles. The master clock responsible for the regulation of circadian rhythms in the body is located in the SCN. Results indicate that SCN2.2 retains intrinsic rhythm-generating properties.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE4192", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS1629", "description": "SCN", "sample_id": [ "GSM28657", "GSM28658", "GSM28659", "GSM28660", "GSM28661", "GSM28662", "GSM28663", "GSM28664", "GSM28665", "GSM28666", "GSM28667", "GSM28668", "GSM28669", "GSM28670", "GSM28671", "GSM28672", "GSM28673", "GSM28674" ], "type": "cell type", "id": "GDS1629_1" }, { "dataset_id": "GDS1629", "description": "SCN2.2 cell line", "sample_id": [ "GSM28447", "GSM28448", "GSM28449", "GSM28450", "GSM28451", "GSM28452", "GSM28453", "GSM28454", "GSM28455", "GSM28456", "GSM28458", "GSM28459", "GSM28460", "GSM28461", "GSM28462", "GSM28463", "GSM28464", "GSM28465", "GSM28466", "GSM28467", "GSM28468", "GSM28469", "GSM28470", "GSM28471", "GSM28472", "GSM28473", "GSM28474" ], "type": "cell type", "id": "GDS1629_2" }, { "dataset_id": "GDS1629", "description": "0 h", "sample_id": [ "GSM28447", "GSM28448", "GSM28459", "GSM28467", "GSM28657", "GSM28667" ], "type": "time", "id": "GDS1629_3" }, { "dataset_id": "GDS1629", "description": "6 h", "sample_id": [ "GSM28449", "GSM28460", "GSM28468", "GSM28658", "GSM28668" ], "type": "time", "id": "GDS1629_4" }, { "dataset_id": "GDS1629", "description": "12 h", "sample_id": [ "GSM28450", "GSM28451", "GSM28461", "GSM28469", "GSM28659", "GSM28669" ], "type": "time", "id": "GDS1629_5" }, { "dataset_id": "GDS1629", "description": "18 h", "sample_id": [ "GSM28452", "GSM28462", "GSM28470", "GSM28660", "GSM28670" ], "type": "time", "id": "GDS1629_6" }, { "dataset_id": "GDS1629", "description": "24 h", "sample_id": [ "GSM28453", "GSM28463", "GSM28471", "GSM28661", "GSM28662", "GSM28671" ], "type": "time", "id": "GDS1629_7" }, { "dataset_id": "GDS1629", "description": "30 h", "sample_id": [ "GSM28454", "GSM28464", "GSM28472", "GSM28663", "GSM28672" ], "type": "time", "id": "GDS1629_8" }, { "dataset_id": "GDS1629", "description": "36 h", "sample_id": [ "GSM28456", "GSM28465", "GSM28473", "GSM28664", "GSM28665", "GSM28673" ], "type": "time", "id": "GDS1629_9" }, { "dataset_id": "GDS1629", "description": "42 h", "sample_id": [ "GSM28455", "GSM28458", "GSM28466", "GSM28474", "GSM28666", "GSM28674" ], "type": "time", "id": "GDS1629_10" }, { "dataset_id": "GDS1629", "description": "biological replicate 1", "sample_id": [ "GSM28447", "GSM28448", "GSM28449", "GSM28450", "GSM28451", "GSM28452", "GSM28453", "GSM28454", "GSM28455", "GSM28456", "GSM28458" ], "type": "protocol", "id": "GDS1629_11" }, { "dataset_id": "GDS1629", "description": "biological replicate 2", "sample_id": [ "GSM28459", "GSM28460", "GSM28461", "GSM28462", "GSM28463", "GSM28464", "GSM28465", "GSM28466" ], "type": "protocol", "id": "GDS1629_12" }, { "dataset_id": "GDS1629", "description": "biological replicate 3", "sample_id": [ "GSM28467", "GSM28468", "GSM28469", "GSM28470", "GSM28471", "GSM28472", "GSM28473", "GSM28474" ], "type": "protocol", "id": "GDS1629_13" }, { "dataset_id": "GDS1629", "description": "technical replicate 1", "sample_id": [ "GSM28657", "GSM28658", "GSM28659", "GSM28660", "GSM28661", "GSM28662", "GSM28663", "GSM28664", "GSM28665", "GSM28666" ], "type": "protocol", "id": "GDS1629_14" }, { "dataset_id": "GDS1629", "description": "technical replicate 2", "sample_id": [ "GSM28667", "GSM28668", "GSM28669", "GSM28670", "GSM28671", "GSM28672", "GSM28673", "GSM28674" ], "type": "protocol", "id": "GDS1629_15" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1629", "version": 1.0, "instances": "45", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1629.tab", "compression": "gz" } ], [ [ "GDS1630.tab" ], { "title": "Immortalized endothelial cell line response to atorvastatin", "description": "Analysis of EA.hy926, an immortalized umbilical vein endothelial cell (HUVEC) line, and its primary cell counterpart following treatment with HMG-CoA reductase inhibitor atorvastatin to inhibit the mevalonate pathway. Results suggest EA.hy926 cells have retained endothelial cell-specific features.", "type": "Expression profiling by array", "pubmed_id": "16575254", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2450", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS1630", "description": "primary", "sample_id": [ "GSM46386", "GSM46387", "GSM46388", "GSM46389", "GSM46390", "GSM46391", "GSM46394", "GSM46395" ], "type": "cell line", "id": "GDS1630_1" }, { "dataset_id": "GDS1630", "description": "immortalized", "sample_id": [ "GSM46371", "GSM46380", "GSM46382", "GSM46383", "GSM46384", "GSM46385", "GSM46392", "GSM46393" ], "type": "cell line", "id": "GDS1630_2" }, { "dataset_id": "GDS1630", "description": "untreated", "sample_id": [ "GSM46371", "GSM46383", "GSM46388", "GSM46389" ], "type": "agent", "id": "GDS1630_3" }, { "dataset_id": "GDS1630", "description": "mevalonate", "sample_id": [ "GSM46384", "GSM46385", "GSM46390", "GSM46391" ], "type": "agent", "id": "GDS1630_4" }, { "dataset_id": "GDS1630", "description": "atorvastatin", "sample_id": [ "GSM46392", "GSM46393", "GSM46394", "GSM46395" ], "type": "agent", "id": "GDS1630_5" }, { "dataset_id": "GDS1630", "description": "atorvastatin and mevalonate", "sample_id": [ "GSM46380", "GSM46382", "GSM46386", "GSM46387" ], "type": "agent", "id": "GDS1630_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1630", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1630.tab", "compression": "gz" } ], [ [ "GDS1631.tab" ], { "title": "Osteoblast differentiation (MG-U74A)", "description": "Analysis of FACS-sorted bone cells 7 and 17 days following induction of differentiation. Cells sorted based on GFP expression from a promoter that becomes active in the preosteoblastic stage between days 5 and 7 or from one that remains inactive until the osteoblastic stage between days 15 and 17.", "type": "Expression profiling by array", "pubmed_id": "15834136", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2332", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1631", "description": "7 d", "sample_id": [ "GSM43184", "GSM43185", "GSM43188", "GSM43198", "GSM43199", "GSM43202", "GSM43205", "GSM43206", "GSM43209" ], "type": "time", "id": "GDS1631_1" }, { "dataset_id": "GDS1631", "description": "17 d", "sample_id": [ "GSM43191", "GSM43192", "GSM43195", "GSM43212", "GSM43213", "GSM43216", "GSM43219", "GSM43222", "GSM43225" ], "type": "time", "id": "GDS1631_2" }, { "dataset_id": "GDS1631", "description": "sorted GFP positive", "sample_id": [ "GSM43188", "GSM43195", "GSM43202", "GSM43209", "GSM43216", "GSM43225" ], "type": "protocol", "id": "GDS1631_3" }, { "dataset_id": "GDS1631", "description": "sorted GFP negative", "sample_id": [ "GSM43185", "GSM43192", "GSM43199", "GSM43206", "GSM43213", "GSM43222" ], "type": "protocol", "id": "GDS1631_4" }, { "dataset_id": "GDS1631", "description": "unsorted", "sample_id": [ "GSM43184", "GSM43191", "GSM43198", "GSM43205", "GSM43212", "GSM43219" ], "type": "protocol", "id": "GDS1631_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1631", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1631.tab", "compression": "gz" } ], [ [ "GDS1632.tab" ], { "title": "Osteoblast differentiation (MG-U74B)", "description": "Analysis of FACS-sorted bone cells 7 and 17 days following induction of differentiation. Cells sorted based on GFP expression from a promoter that becomes active in the preosteoblastic stage between days 5 and 7 or from one that remains inactive until the osteoblastic stage between days 15 and 17.", "type": "Expression profiling by array", "pubmed_id": "15834136", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE2332", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1632", "description": "7 d", "sample_id": [ "GSM43186", "GSM43189", "GSM43200", "GSM43203", "GSM43207", "GSM43210" ], "type": "time", "id": "GDS1632_1" }, { "dataset_id": "GDS1632", "description": "17 d", "sample_id": [ "GSM43193", "GSM43196", "GSM43214", "GSM43217", "GSM43220", "GSM43223", "GSM43226" ], "type": "time", "id": "GDS1632_2" }, { "dataset_id": "GDS1632", "description": "sorted GFP positive", "sample_id": [ "GSM43189", "GSM43196", "GSM43203", "GSM43210", "GSM43217", "GSM43226" ], "type": "protocol", "id": "GDS1632_3" }, { "dataset_id": "GDS1632", "description": "sorted GFP negative", "sample_id": [ "GSM43186", "GSM43193", "GSM43200", "GSM43207", "GSM43214", "GSM43223" ], "type": "protocol", "id": "GDS1632_4" }, { "dataset_id": "GDS1632", "description": "unsorted", "sample_id": [ "GSM43220" ], "type": "protocol", "id": "GDS1632_5" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1632", "version": 1.0, "instances": "13", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1632.tab", "compression": "gz" } ], [ [ "GDS1633.tab" ], { "title": "Osteoblast differentiation (MG-U74C)", "description": "Analysis of FACS-sorted bone cells 7 and 17 days following induction of differentiation. Cells sorted based on GFP expression from a promoter that becomes active in the preosteoblastic stage between days 5 and 7 or from one that remains inactive until the osteoblastic stage between days 15 and 17.", "type": "Expression profiling by array", "pubmed_id": "15834136", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE2332", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1633", "description": "7 d", "sample_id": [ "GSM43187", "GSM43190", "GSM43201", "GSM43204", "GSM43208", "GSM43211" ], "type": "time", "id": "GDS1633_1" }, { "dataset_id": "GDS1633", "description": "17 d", "sample_id": [ "GSM43194", "GSM43197", "GSM43215", "GSM43218", "GSM43221", "GSM43224", "GSM43227" ], "type": "time", "id": "GDS1633_2" }, { "dataset_id": "GDS1633", "description": "sorted GFP positive", "sample_id": [ "GSM43190", "GSM43197", "GSM43204", "GSM43211", "GSM43218", "GSM43227" ], "type": "protocol", "id": "GDS1633_3" }, { "dataset_id": "GDS1633", "description": "sorted GFP negative", "sample_id": [ "GSM43187", "GSM43194", "GSM43201", "GSM43208", "GSM43215", "GSM43224" ], "type": "protocol", "id": "GDS1633_4" }, { "dataset_id": "GDS1633", "description": "unsorted", "sample_id": [ "GSM43221" ], "type": "protocol", "id": "GDS1633_5" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1633", "version": 1.0, "instances": "13", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1633.tab", "compression": "gz" } ], [ [ "GDS1634.tab" ], { "title": "Nodose and dorsal root ganglia comparison (MG-U74A)", "description": "Comparison of whole nodose ganglia (NG) and dorsal root ganglia (DRG) vs. the population of laser-captured visceral sensory neurons. Results identify striking differences and the need for microdissection when studying visceral sensory neurons because of dilution of signal by somatic sensory neurons.", "type": "Expression profiling by array", "pubmed_id": "16303873", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE2917", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1634", "description": "dorsal root ganglion", "sample_id": [ "GSM63653", "GSM63654", "GSM63655", "GSM63656", "GSM63657", "GSM63665", "GSM63666", "GSM63667", "GSM63668", "GSM63669" ], "type": "tissue", "id": "GDS1634_1" }, { "dataset_id": "GDS1634", "description": "nodose root ganglion", "sample_id": [ "GSM63658", "GSM63659", "GSM63660", "GSM63661", "GSM63662", "GSM63663", "GSM63664", "GSM63670", "GSM63671", "GSM63672", "GSM63673", "GSM63674" ], "type": "tissue", "id": "GDS1634_2" }, { "dataset_id": "GDS1634", "description": "whole ganglia", "sample_id": [ "GSM63653", "GSM63654", "GSM63655", "GSM63656", "GSM63657", "GSM63658", "GSM63659", "GSM63660", "GSM63661", "GSM63662", "GSM63663", "GSM63664" ], "type": "protocol", "id": "GDS1634_3" }, { "dataset_id": "GDS1634", "description": "laser capture microdissected neurons", "sample_id": [ "GSM63665", "GSM63666", "GSM63667", "GSM63668", "GSM63669", "GSM63670", "GSM63671", "GSM63672", "GSM63673", "GSM63674" ], "type": "protocol", "id": "GDS1634_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1634", "version": 1.0, "instances": "22", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1634.tab", "compression": "gz" } ], [ [ "GDS1635.tab" ], { "title": "Nodose and dorsal root ganglia comparison (MG-430 2.0)", "description": "Analysis of laser-captured neurons of the nodose (NG) and dorsal root ganglia (DRG). Vagal afferents arise from NG and convey mostly physiological information, while spinal afferents arise from DRG and transmit noxious signals. Results elucidate molecular identities for these different properties.", "type": "Expression profiling by array", "pubmed_id": "16303873", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2917", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1635", "description": "dorsal root ganglion", "sample_id": [ "GSM63675", "GSM63676", "GSM63677", "GSM63678", "GSM63679", "GSM63680", "GSM63681", "GSM63682", "GSM63683" ], "type": "tissue", "id": "GDS1635_1" }, { "dataset_id": "GDS1635", "description": "nodose root ganglion", "sample_id": [ "GSM63684", "GSM63685", "GSM63686", "GSM63687", "GSM63688", "GSM63689", "GSM63690", "GSM63691", "GSM63692", "GSM63693", "GSM63694" ], "type": "tissue", "id": "GDS1635_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1635", "version": 1.0, "instances": "20", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1635.tab", "compression": "gz" } ], [ [ "GDS1636.tab" ], { "title": "Patulin cytotoxic effect", "description": "Expression profiling of S288C cells treated with 50 ppm patulin for 2 hours. Patulin is a toxic and colorless crystalline antibiotic produced by several molds that can grow naturally on fruits and vegetables. Results provide insight into the mechanisms underlying the cytotoxicity of patulin.", "type": "Expression profiling by array", "pubmed_id": "16506856", "platform": "GPL1945", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6912", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE2923", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1636", "description": "low power scan", "sample_id": [ "GSM63226", "GSM63228", "GSM63230" ], "type": "protocol", "id": "GDS1636_1" }, { "dataset_id": "GDS1636", "description": "high power scan", "sample_id": [ "GSM63163", "GSM63227", "GSM63229" ], "type": "protocol", "id": "GDS1636_2" } ], "taxid": "4932", "genes": 5926, "aggregation_function": "mean", "name": "GDS1636", "version": 1.0, "instances": "6", "variables": 5928, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1636.tab", "compression": "gz" } ], [ [ "GDS1637.tab" ], { "title": "Oncogene-induced sensescence in vitro model", "description": "Analysis of transformed cell lines that either exhibit oncogene-induced senescence (OIS) triggered by MEK activation or bypass OIS. Senescent cells exist in premalignant tumors but not in malignant ones. Results provide insight into the molecular basis of OIS.", "type": "Expression profiling by array", "pubmed_id": "16079833", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2487", "order": "none", "update_date": "Oct 24 2006", "subsets": [ { "dataset_id": "GDS1637", "description": "ITV", "sample_id": [ "GSM42080", "GSM42103" ], "type": "cell line", "id": "GDS1637_1" }, { "dataset_id": "GDS1637", "description": "ITM", "sample_id": [ "GSM42104", "GSM42170" ], "type": "cell line", "id": "GDS1637_2" }, { "dataset_id": "GDS1637", "description": "ITM-ST", "sample_id": [ "GSM42172", "GSM42175" ], "type": "cell line", "id": "GDS1637_3" }, { "dataset_id": "GDS1637", "description": "ITM-E6E7", "sample_id": [ "GSM42176", "GSM42177" ], "type": "cell line", "id": "GDS1637_4" }, { "dataset_id": "GDS1637", "description": "ITM-E6E7-ST", "sample_id": [ "GSM42178", "GSM42179" ], "type": "cell line", "id": "GDS1637_5" }, { "dataset_id": "GDS1637", "description": "senescence induced", "sample_id": [ "GSM42104", "GSM42170", "GSM42172", "GSM42175" ], "type": "disease state", "id": "GDS1637_6" }, { "dataset_id": "GDS1637", "description": "senescence bypassed", "sample_id": [ "GSM42176", "GSM42177", "GSM42178", "GSM42179" ], "type": "disease state", "id": "GDS1637_7" }, { "dataset_id": "GDS1637", "description": "control", "sample_id": [ "GSM42080", "GSM42103" ], "type": "disease state", "id": "GDS1637_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1637", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1637.tab", "compression": "gz" } ], [ [ "GDS1638.tab" ], { "title": "Ikaros mutant thymic tumors", "description": "Analysis of thymic tumors or premalignant thymocytes that contains the hypomorphic Ikaros mutation (IkL/L). Ikaros is a tumor suppressor in T cells. Results provide insight into the molecular changes involved in Ikaros-dependent tumor development.", "type": "Expression profiling by array", "pubmed_id": "16354692", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2501", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1638", "description": "wild type", "sample_id": [ "GSM47606", "GSM47607" ], "type": "genotype/variation", "id": "GDS1638_1" }, { "dataset_id": "GDS1638", "description": "IkL/L mutant", "sample_id": [ "GSM47600", "GSM47601", "GSM47602", "GSM47603", "GSM47604", "GSM47605", "GSM47608", "GSM47609" ], "type": "genotype/variation", "id": "GDS1638_2" }, { "dataset_id": "GDS1638", "description": "thymic lymphoma", "sample_id": [ "GSM47600", "GSM47601", "GSM47602", "GSM47603", "GSM47604", "GSM47605" ], "type": "cell type", "id": "GDS1638_3" }, { "dataset_id": "GDS1638", "description": "nontransformed thymocyte", "sample_id": [ "GSM47606", "GSM47607", "GSM47608", "GSM47609" ], "type": "cell type", "id": "GDS1638_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1638", "version": 1.0, "instances": "10", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1638.tab", "compression": "gz" } ], [ [ "GDS164.tab" ], { "title": "Shock and adaptive response to injury", "description": "C57/B6 mice subjected either to sham laparotomy or cecal ligation and puncture (CLP) and spleen samples taken 24 hours post surgery. Effort to increase understanding of shock and the adaptive response to injury at the level of the entire genome.", "type": "Expression profiling by array", "pubmed_id": "12483063", "platform": "GPL207", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "597", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE510", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS164", "description": "control", "sample_id": [ "GSM2402", "GSM2403", "GSM2404" ], "type": "shock", "id": "GDS164_1" }, { "dataset_id": "GDS164", "description": "cecal ligation and puncture", "sample_id": [ "GSM2405", "GSM2406", "GSM2407" ], "type": "shock", "id": "GDS164_2" } ], "taxid": "10090", "genes": 597, "aggregation_function": "mean", "name": "GDS164", "version": 1.0, "instances": "6", "variables": 599, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS164.tab", "compression": "gz" } ], [ [ "GDS1640.tab" ], { "title": "Myocilin over-secretion effect on the retina", "description": "Analysis of retinas of transgenics that secret high levels of myocilin (MYOC) into the aqueous humor of the eye. Results provide insight into the role of myocilin in the pathogenesis of glaucoma.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1835", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1640", "description": "control", "sample_id": [ "GSM32153", "GSM32154" ], "type": "genotype/variation", "id": "GDS1640_1" }, { "dataset_id": "GDS1640", "description": "myocilin transgenic", "sample_id": [ "GSM32155", "GSM32156" ], "type": "genotype/variation", "id": "GDS1640_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1640", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1640.tab", "compression": "gz" } ], [ [ "GDS1641.tab" ], { "title": "Dopaminergic neurons from the substantia nigra pars compacta and ventral tegmental area", "description": "Analysis of dopaminergic neurons of the substantia nigra pars compacta (SNc) and the ventral tegmental area (VTA) from normal animals. SNc dopaminergic neurons are more susceptible to degeneration in Parkinson's disease than VTA dopaminergic neurons.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1837", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1641", "description": "ventral tegmental area", "sample_id": [ "GSM32158", "GSM32160", "GSM32162", "GSM32164", "GSM32166", "GSM32168", "GSM32171" ], "type": "tissue", "id": "GDS1641_1" }, { "dataset_id": "GDS1641", "description": "substantia nigra pars compacta", "sample_id": [ "GSM32157", "GSM32159", "GSM32161", "GSM32163", "GSM32165", "GSM32167", "GSM32169", "GSM32170" ], "type": "tissue", "id": "GDS1641_2" }, { "dataset_id": "GDS1641", "description": "1", "sample_id": [ "GSM32157", "GSM32158" ], "type": "specimen", "id": "GDS1641_3" }, { "dataset_id": "GDS1641", "description": "2", "sample_id": [ "GSM32159", "GSM32160" ], "type": "specimen", "id": "GDS1641_4" }, { "dataset_id": "GDS1641", "description": "3", "sample_id": [ "GSM32161", "GSM32162" ], "type": "specimen", "id": "GDS1641_5" }, { "dataset_id": "GDS1641", "description": "4", "sample_id": [ "GSM32163", "GSM32164" ], "type": "specimen", "id": "GDS1641_6" }, { "dataset_id": "GDS1641", "description": "5", "sample_id": [ "GSM32165", "GSM32166" ], "type": "specimen", "id": "GDS1641_7" }, { "dataset_id": "GDS1641", "description": "6", "sample_id": [ "GSM32167", "GSM32168" ], "type": "specimen", "id": "GDS1641_8" }, { "dataset_id": "GDS1641", "description": "7", "sample_id": [ "GSM32169" ], "type": "specimen", "id": "GDS1641_9" }, { "dataset_id": "GDS1641", "description": "8", "sample_id": [ "GSM32170", "GSM32171" ], "type": "specimen", "id": "GDS1641_10" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1641", "version": 1.0, "instances": "15", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1641.tab", "compression": "gz" } ], [ [ "GDS1642.tab" ], { "title": "Kainate-induced status epilepticus effect on immature hippocampus: time course", "description": "Analysis of the hippocampus of immature animals up to 240 hours following kainite (KA) induced status epilepticus (SE). Unlike adults, KA-induced SE in immature animals causes neither cell death nor recurrent spontaneous seizures. Results provide insight into the molecular basis of these responses.", "type": "Expression profiling by array", "pubmed_id": "15800381", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "count", "reference_series": "GSE4236", "order": "none", "update_date": "Oct 03 2012", "subsets": [ { "dataset_id": "GDS1642", "description": "control", "sample_id": [ "GSM32070", "GSM32071", "GSM32072", "GSM32076", "GSM32077", "GSM32078", "GSM32082", "GSM32083", "GSM32084", "GSM32088", "GSM32089", "GSM32090", "GSM32091", "GSM32092", "GSM32093", "GSM32123", "GSM32124", "GSM32125", "GSM32129", "GSM32130", "GSM32131", "GSM32135", "GSM32136", "GSM32137", "GSM32141", "GSM32142", "GSM32143", "GSM32147", "GSM32148", "GSM32149" ], "type": "agent", "id": "GDS1642_1" }, { "dataset_id": "GDS1642", "description": "kainate", "sample_id": [ "GSM32067", "GSM32068", "GSM32069", "GSM32073", "GSM32074", "GSM32075", "GSM32079", "GSM32080", "GSM32081", "GSM32085", "GSM32086", "GSM32087", "GSM32094", "GSM32095", "GSM32096", "GSM32126", "GSM32127", "GSM32128", "GSM32132", "GSM32133", "GSM32134", "GSM32138", "GSM32139", "GSM32140", "GSM32144", "GSM32145", "GSM32146", "GSM32150", "GSM32151", "GSM32152" ], "type": "agent", "id": "GDS1642_2" }, { "dataset_id": "GDS1642", "description": "immature", "sample_id": [ "GSM32067", "GSM32068", "GSM32069", "GSM32070", "GSM32071", "GSM32072", "GSM32073", "GSM32074", "GSM32075", "GSM32076", "GSM32077", "GSM32078", "GSM32079", "GSM32080", "GSM32081", "GSM32082", "GSM32083", "GSM32084", "GSM32085", "GSM32086", "GSM32087", "GSM32088", "GSM32089", "GSM32090", "GSM32091", "GSM32092", "GSM32093", "GSM32094", "GSM32095", "GSM32096" ], "type": "age", "id": "GDS1642_3" }, { "dataset_id": "GDS1642", "description": "mature", "sample_id": [ "GSM32123", "GSM32124", "GSM32125", "GSM32126", "GSM32127", "GSM32128", "GSM32129", "GSM32130", "GSM32131", "GSM32132", "GSM32133", "GSM32134", "GSM32135", "GSM32136", "GSM32137", "GSM32138", "GSM32139", "GSM32140", "GSM32141", "GSM32142", "GSM32143", "GSM32144", "GSM32145", "GSM32146", "GSM32147", "GSM32148", "GSM32149", "GSM32150", "GSM32151", "GSM32152" ], "type": "age", "id": "GDS1642_4" }, { "dataset_id": "GDS1642", "description": "1 h", "sample_id": [ "GSM32067", "GSM32068", "GSM32069", "GSM32070", "GSM32071", "GSM32072", "GSM32123", "GSM32124", "GSM32125", "GSM32126", "GSM32127", "GSM32128" ], "type": "time", "id": "GDS1642_5" }, { "dataset_id": "GDS1642", "description": "6 h", "sample_id": [ "GSM32073", "GSM32074", "GSM32075", "GSM32076", "GSM32077", "GSM32078", "GSM32129", "GSM32130", "GSM32131", "GSM32132", "GSM32133", "GSM32134" ], "type": "time", "id": "GDS1642_6" }, { "dataset_id": "GDS1642", "description": "24 h", "sample_id": [ "GSM32079", "GSM32080", "GSM32081", "GSM32082", "GSM32083", "GSM32084", "GSM32135", "GSM32136", "GSM32137", "GSM32138", "GSM32139", "GSM32140" ], "type": "time", "id": "GDS1642_7" }, { "dataset_id": "GDS1642", "description": "72 h", "sample_id": [ "GSM32085", "GSM32086", "GSM32087", "GSM32088", "GSM32089", "GSM32090", "GSM32141", "GSM32142", "GSM32143", "GSM32144", "GSM32145", "GSM32146" ], "type": "time", "id": "GDS1642_8" }, { "dataset_id": "GDS1642", "description": "240 h", "sample_id": [ "GSM32091", "GSM32092", "GSM32093", "GSM32094", "GSM32095", "GSM32096", "GSM32147", "GSM32148", "GSM32149", "GSM32150", "GSM32151", "GSM32152" ], "type": "time", "id": "GDS1642_9" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1642", "version": 1.0, "instances": "60", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1642.tab", "compression": "gz" } ], [ [ "GDS1644.tab" ], { "title": "VTS1 deletion mutant", "description": "Analysis of a strain lacking Vts1p. Vts1p is a putative post-transcriptional regulator that uses a sterile alpha motif (SAM) domain to bind an RNA hairpin termed the Smaug recognition element (SRE). Results identify genes that may be regulated by Vts1p and contain one or more copies of the SRE.", "type": "Expression profiling by array", "pubmed_id": "16429156", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3859", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1644", "description": "wild type", "sample_id": [ "GSM88277", "GSM88278" ], "type": "genotype/variation", "id": "GDS1644_1" }, { "dataset_id": "GDS1644", "description": "vts1 null", "sample_id": [ "GSM88279", "GSM88280", "GSM88281" ], "type": "genotype/variation", "id": "GDS1644_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1644", "version": 1.0, "instances": "5", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1644.tab", "compression": "gz" } ], [ [ "GDS1645.tab" ], { "title": "Nitric oxide effect on soluble guanylate cyclase deficient cells", "description": "Analysis of soluble guanylate cyclase-deficient U937 cells exposed to the nitric oxide (NO) donor S-nitrosoglutathione. Cells treated in the presence of dibutyryl-cAMP (Bt2cAMP) to block signaling due to NO-induced decreases in cAMP. Results provide insight into the cGMP-independent effects of NO.", "type": "Expression profiling by array", "pubmed_id": "16269079", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE2649", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1645", "description": "naive", "sample_id": [ "GSM42180", "GSM42186", "GSM42192", "GSM42198", "GSM42204", "GSM42210", "GSM42216" ], "type": "development stage", "id": "GDS1645_1" }, { "dataset_id": "GDS1645", "description": "differentiated", "sample_id": [ "GSM42181", "GSM42182", "GSM42183", "GSM42184", "GSM42185", "GSM42187", "GSM42188", "GSM42189", "GSM42190", "GSM42191", "GSM42193", "GSM42194", "GSM42195", "GSM42196", "GSM42197", "GSM42199", "GSM42200", "GSM42201", "GSM42202", "GSM42203", "GSM42205", "GSM42206", "GSM42207", "GSM42208", "GSM42209", "GSM42211", "GSM42212", "GSM42213", "GSM42214", "GSM42215", "GSM42217", "GSM42218", "GSM42219", "GSM42220", "GSM42221" ], "type": "development stage", "id": "GDS1645_2" }, { "dataset_id": "GDS1645", "description": "untreated", "sample_id": [ "GSM42180", "GSM42181", "GSM42186", "GSM42187", "GSM42192", "GSM42193", "GSM42198", "GSM42199", "GSM42204", "GSM42205", "GSM42210", "GSM42211", "GSM42216", "GSM42217" ], "type": "agent", "id": "GDS1645_3" }, { "dataset_id": "GDS1645", "description": "glutathione", "sample_id": [ "GSM42183", "GSM42189", "GSM42195", "GSM42201", "GSM42207", "GSM42213", "GSM42219" ], "type": "agent", "id": "GDS1645_4" }, { "dataset_id": "GDS1645", "description": "glutathione plus dibutyryl cAMP", "sample_id": [ "GSM42182", "GSM42188", "GSM42194", "GSM42200", "GSM42206", "GSM42212", "GSM42218" ], "type": "agent", "id": "GDS1645_5" }, { "dataset_id": "GDS1645", "description": "S-nitrosoglutathione", "sample_id": [ "GSM42185", "GSM42191", "GSM42197", "GSM42203", "GSM42209", "GSM42215", "GSM42221" ], "type": "agent", "id": "GDS1645_6" }, { "dataset_id": "GDS1645", "description": "S-nitrosoglutathione plus dibutyryl cAMP", "sample_id": [ "GSM42184", "GSM42190", "GSM42196", "GSM42202", "GSM42208", "GSM42214", "GSM42220" ], "type": "agent", "id": "GDS1645_7" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS1645", "version": 1.0, "instances": "42", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1645.tab", "compression": "gz" } ], [ [ "GDS1646.tab" ], { "title": "HIV-1 burden effect on mononuclear cell response to co-infection with Neisseria gonorrhoeae", "description": "Analysis of peripheral blood mononuclear cells infected with various titers of HIV-1 and exposed to a single infectious dose of Neisseria gonorrhoeae (Gc). Results provide insight into the role of viral burden in defining the cellular contribution to host immune response to co-infection with Gc.", "type": "Expression profiling by array", "pubmed_id": "16352629", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE2505", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1646", "description": "High HIV-titer", "sample_id": [ "GSM47700", "GSM47862", "GSM47867", "GSM47868" ], "type": "dose", "id": "GDS1646_1" }, { "dataset_id": "GDS1646", "description": "Medium HIV-titer", "sample_id": [ "GSM47863", "GSM47864", "GSM47869" ], "type": "dose", "id": "GDS1646_2" }, { "dataset_id": "GDS1646", "description": "Low HIV-titer", "sample_id": [ "GSM47865", "GSM47866", "GSM47870", "GSM47871" ], "type": "dose", "id": "GDS1646_3" }, { "dataset_id": "GDS1646", "description": "untreated", "sample_id": [ "GSM47867", "GSM47868", "GSM47869", "GSM47870", "GSM47871" ], "type": "agent", "id": "GDS1646_4" }, { "dataset_id": "GDS1646", "description": "N. gonorrheae", "sample_id": [ "GSM47700", "GSM47862", "GSM47863", "GSM47864", "GSM47865", "GSM47866" ], "type": "agent", "id": "GDS1646_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS1646", "version": 1.0, "instances": "11", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1646.tab", "compression": "gz" } ], [ [ "GDS1647.tab" ], { "title": "RPE65 null mutant model of Leber's congenital amaurosis", "description": "Analysis of retinas of RPE65 null mutants at 2, 4 and 6 months of age. RPE65 is highly expressed in retinal pigment epithelial cells. Mutations in REP65 cause 10-15% of Leber's congenital amaurosis (LCA) cases, a severe form of retinal dystrophy. Results provide insight into early LCA progression.", "type": "Expression profiling by array", "pubmed_id": "17012256", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE3249", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS1647", "description": "wild type", "sample_id": [ "GSM70908", "GSM70909", "GSM70910", "GSM70911", "GSM70912", "GSM70913", "GSM70914", "GSM70915", "GSM70916" ], "type": "genotype/variation", "id": "GDS1647_1" }, { "dataset_id": "GDS1647", "description": "rpe65 knockout", "sample_id": [ "GSM70899", "GSM70900", "GSM70901", "GSM70902", "GSM70903", "GSM70904", "GSM70905", "GSM70906", "GSM70907" ], "type": "genotype/variation", "id": "GDS1647_2" }, { "dataset_id": "GDS1647", "description": "2 mo", "sample_id": [ "GSM70899", "GSM70900", "GSM70901", "GSM70908", "GSM70909", "GSM70910" ], "type": "age", "id": "GDS1647_3" }, { "dataset_id": "GDS1647", "description": "4 mo", "sample_id": [ "GSM70902", "GSM70903", "GSM70904", "GSM70911", "GSM70912", "GSM70913" ], "type": "age", "id": "GDS1647_4" }, { "dataset_id": "GDS1647", "description": "6 mo", "sample_id": [ "GSM70905", "GSM70906", "GSM70907", "GSM70914", "GSM70915", "GSM70916" ], "type": "age", "id": "GDS1647_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1647", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1647.tab", "compression": "gz" } ], [ [ "GDS1648.tab" ], { "title": "Hypoxia effect on HIF-1 alpha null hepatocytes", "description": "Analysis of hypoxia-inducible factor-1alpha (HIF-1alpha) null mutant hepatocytes subjected to hypoxic conditions for 8 hours. The HIF-1alpha transcription factor is a key regulator of oxygen homeostasis. Results provide insight into hepatocyte gene expression changes induced by short-term hypoxia.", "type": "Expression profiling by array", "pubmed_id": "17518628", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1321", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1648", "description": "wild type", "sample_id": [ "GSM21756", "GSM21757", "GSM21760", "GSM21762", "GSM21764" ], "type": "genotype/variation", "id": "GDS1648_1" }, { "dataset_id": "GDS1648", "description": "HIF-1 alpha null", "sample_id": [ "GSM21754", "GSM21755", "GSM21766", "GSM21768", "GSM21770" ], "type": "genotype/variation", "id": "GDS1648_2" }, { "dataset_id": "GDS1648", "description": "normoxia", "sample_id": [ "GSM21754", "GSM21755", "GSM21756", "GSM21757" ], "type": "stress", "id": "GDS1648_3" }, { "dataset_id": "GDS1648", "description": "hypoxia", "sample_id": [ "GSM21760", "GSM21762", "GSM21764", "GSM21766", "GSM21768", "GSM21770" ], "type": "stress", "id": "GDS1648_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1648", "version": 1.0, "instances": "10", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1648.tab", "compression": "gz" } ], [ [ "GDS1649.tab" ], { "title": "Urethane-induced lung tumor model of pulmonary adenocarcinoma", "description": "Analysis of lung tumors that develop following treatment with urethane. Urethane-induced lung tumors exhibit similar histological appearance and molecular changes to human pulmonary adenocarcinoma (AC). Results compared with those from human AC (GDS1650).", "type": "Expression profiling by array", "pubmed_id": "16314486", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE2514", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1649", "description": "adjacent normal", "sample_id": [ "GSM47977", "GSM47978", "GSM47979", "GSM47980", "GSM47981", "GSM47982", "GSM47983", "GSM47984", "GSM47997", "GSM47998", "GSM47999", "GSM48000", "GSM48001", "GSM48002", "GSM48003" ], "type": "tissue", "id": "GDS1649_1" }, { "dataset_id": "GDS1649", "description": "tumor", "sample_id": [ "GSM47985", "GSM47986", "GSM47987", "GSM47988", "GSM47989", "GSM47990", "GSM47991", "GSM47992", "GSM47993", "GSM47994", "GSM47995", "GSM47996", "GSM48004", "GSM48005", "GSM48006", "GSM48007", "GSM48008", "GSM48009", "GSM48010", "GSM48011", "GSM48012", "GSM48013", "GSM48014", "GSM48015", "GSM48016", "GSM48017", "GSM48018", "GSM48019", "GSM48020" ], "type": "tissue", "id": "GDS1649_2" }, { "dataset_id": "GDS1649", "description": "24 to 26 wk (early)", "sample_id": [ "GSM47977", "GSM47978", "GSM47979", "GSM47980", "GSM47981", "GSM47982", "GSM47983", "GSM47984", "GSM47985", "GSM47986", "GSM47987", "GSM47988", "GSM47989", "GSM47990", "GSM47991", "GSM47992", "GSM47993", "GSM47994", "GSM47995", "GSM47996" ], "type": "time", "id": "GDS1649_3" }, { "dataset_id": "GDS1649", "description": "42 wk (late)", "sample_id": [ "GSM47997", "GSM47998", "GSM47999", "GSM48000", "GSM48001", "GSM48002", "GSM48003", "GSM48004", "GSM48005", "GSM48006", "GSM48007", "GSM48008", "GSM48009", "GSM48010", "GSM48011", "GSM48012", "GSM48013", "GSM48014", "GSM48015", "GSM48016", "GSM48017", "GSM48018", "GSM48019", "GSM48020" ], "type": "time", "id": "GDS1649_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1649", "version": 1.0, "instances": "44", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1649.tab", "compression": "gz" } ], [ [ "GDS1650.tab" ], { "title": "Pulmonary adenocarcinoma", "description": "Analysis of pulmonary adenocarcinomas (AC). Carcinogen exposure is responsible for the majority of ACs. Results compared with those obtained from a urethane-induced lung tumor model in the mouse (GDS1649), and provide insight into the conserved pathways underlying the development of AC.", "type": "Expression profiling by array", "pubmed_id": "16314486", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2514", "order": "none", "update_date": "Nov 01 2006", "subsets": [ { "dataset_id": "GDS1650", "description": "adjacent normal", "sample_id": [ "GSM47958", "GSM47959", "GSM47960", "GSM47961", "GSM47962", "GSM47963", "GSM47964", "GSM47965", "GSM47966", "GSM47967", "GSM47968", "GSM47969", "GSM47970", "GSM47971", "GSM47972", "GSM47973", "GSM47974", "GSM47975", "GSM47976" ], "type": "tissue", "id": "GDS1650_1" }, { "dataset_id": "GDS1650", "description": "tumor", "sample_id": [ "GSM36757", "GSM36758", "GSM36759", "GSM36760", "GSM36761", "GSM36762", "GSM36763", "GSM36764", "GSM36765", "GSM36766", "GSM36767", "GSM36768", "GSM36769", "GSM36770", "GSM36771", "GSM36772", "GSM36773", "GSM36774", "GSM36775", "GSM36776" ], "type": "tissue", "id": "GDS1650_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1650", "version": 1.0, "instances": "39", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1650.tab", "compression": "gz" } ], [ [ "GDS1651.tab" ], { "title": "POU-domain transcription factor Brn3a knockout effect on embryonic ganglia (MG-U74A)", "description": "Analysis of embryonic day 13.5 trigeminal ganglia of Brn3a knockout mutants. Brn3a encodes a POU-domain transcription factor. Results provide insight into the molecular mechanisms underlying the essential role of the Brn3a protein in normal axon growth and neuronal survival.", "type": "Expression profiling by array", "pubmed_id": "15253936", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3895", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1651", "description": "wild type", "sample_id": [ "GSM89135", "GSM89138" ], "type": "genotype/variation", "id": "GDS1651_1" }, { "dataset_id": "GDS1651", "description": "heterozygous Brn3a mutant", "sample_id": [ "GSM89133", "GSM89136" ], "type": "genotype/variation", "id": "GDS1651_2" }, { "dataset_id": "GDS1651", "description": "homozygous Brn3a mutant", "sample_id": [ "GSM89134", "GSM89137" ], "type": "genotype/variation", "id": "GDS1651_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1651", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1651.tab", "compression": "gz" } ], [ [ "GDS1652.tab" ], { "title": "POU-domain transcription factor Brn3a knockout effect on embryonic ganglia (MG-U74B)", "description": "Analysis of embryonic day 13.5 trigeminal ganglia of Brn3a knockout mutants. Brn3a encodes a POU-domain transcription factor. Results provide insight into the molecular mechanisms underlying the essential role of the Brn3a protein in normal axon growth and neuronal survival.", "type": "Expression profiling by array", "pubmed_id": "15253936", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3895", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1652", "description": "wild type", "sample_id": [ "GSM89141" ], "type": "genotype/variation", "id": "GDS1652_1" }, { "dataset_id": "GDS1652", "description": "heterozygous Brn3a mutant", "sample_id": [ "GSM89139", "GSM89142" ], "type": "genotype/variation", "id": "GDS1652_2" }, { "dataset_id": "GDS1652", "description": "homozygous Brn3a mutant", "sample_id": [ "GSM89140", "GSM89143" ], "type": "genotype/variation", "id": "GDS1652_3" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1652", "version": 1.0, "instances": "5", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1652.tab", "compression": "gz" } ], [ [ "GDS1653.tab" ], { "title": "Linker histone H1 depletion", "description": "Analysis of embryonic stem (ES) cells from histone H1c, H1d, H1e triple null mutants. The triple-H1 null ES cells have close to a 50% reduction in H1 content. Results provide insight into the mechanisms by which linker H1 affects chromatin structure and gene transcription in vivo.", "type": "Expression profiling by array", "pubmed_id": "16377562", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3714", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1653", "description": "wild type", "sample_id": [ "GSM85686", "GSM85688" ], "type": "genotype/variation", "id": "GDS1653_1" }, { "dataset_id": "GDS1653", "description": "triple H1 null", "sample_id": [ "GSM85685", "GSM85687", "GSM85689", "GSM85690" ], "type": "genotype/variation", "id": "GDS1653_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1653", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1653.tab", "compression": "gz" } ], [ [ "GDS1654.tab" ], { "title": "Dendritic cell subpopulations: spleen (MG-U74A)", "description": "Analysis of three dendritic cell (DC) subpopulations from BALB/c spleens: interferon-producing killer DCs (IKDCs), plasmacytoid DCs (PDCs), and conventional DCs (cDCs). Results identify IKDCs as a distinct DC lineage and provide insight into the role of IKDCs in linking innate and adaptive immunity.", "type": "Expression profiling by array", "pubmed_id": "16444266", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3691", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1654", "description": "conventional dendritic", "sample_id": [ "GSM85331", "GSM85332" ], "type": "cell type", "id": "GDS1654_1" }, { "dataset_id": "GDS1654", "description": "plasmacytoid dendritic", "sample_id": [ "GSM85333", "GSM85334" ], "type": "cell type", "id": "GDS1654_2" }, { "dataset_id": "GDS1654", "description": "interferon producing killer dendritic", "sample_id": [ "GSM85329", "GSM85330" ], "type": "cell type", "id": "GDS1654_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1654", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1654.tab", "compression": "gz" } ], [ [ "GDS1655.tab" ], { "title": "Medullary thymic epithelial cells", "description": "Comparison of medullary thymic epithelial cells (TECs) to cortical TECs, dendritic cells, and macrophages. Aberrent expression of tissue-restricted antigens, called promiscuous gene expression (PGE), is a property of the thymic stroma. Results provide insight into the scope of PGE in the thymus.", "type": "Expression profiling by array", "pubmed_id": "15983066", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2585", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1655", "description": "macrophage", "sample_id": [ "GSM49743", "GSM49744" ], "type": "cell type", "id": "GDS1655_1" }, { "dataset_id": "GDS1655", "description": "dendritic", "sample_id": [ "GSM49741", "GSM49742" ], "type": "cell type", "id": "GDS1655_2" }, { "dataset_id": "GDS1655", "description": "cortical TEC", "sample_id": [ "GSM49739", "GSM49740" ], "type": "cell type", "id": "GDS1655_3" }, { "dataset_id": "GDS1655", "description": "medullary TEC", "sample_id": [ "GSM49745", "GSM49746" ], "type": "cell type", "id": "GDS1655_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1655", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1655.tab", "compression": "gz" } ], [ [ "GDS1657.tab" ], { "title": "Dendritic cell subpopulations: spleen (MG-U74B)", "description": "Analysis of three dendritic cell (DC) subpopulations from BALB/c spleens: interferon-producing killer DCs (IKDCs), plasmacytoid DCs (PDCs), and conventional DCs (cDCs). Results identify IKDCs as a distinct DC lineage and provide insight into the role of IKDCs in linking innate and adaptive immunity.", "type": "Expression profiling by array", "pubmed_id": "16444266", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3691", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1657", "description": "conventional dendritic", "sample_id": [ "GSM85337", "GSM85338" ], "type": "cell type", "id": "GDS1657_1" }, { "dataset_id": "GDS1657", "description": "plasmacytoid dendritic", "sample_id": [ "GSM85339", "GSM85340" ], "type": "cell type", "id": "GDS1657_2" }, { "dataset_id": "GDS1657", "description": "interferon producing killer dendritic", "sample_id": [ "GSM85335", "GSM85336" ], "type": "cell type", "id": "GDS1657_3" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1657", "version": 1.0, "instances": "6", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1657.tab", "compression": "gz" } ], [ [ "GDS1658.tab" ], { "title": "Dendritic cell subpopulations: spleen (MG-U74C)", "description": "Analysis of three dendritic cell (DC) subpopulations from BALB/c spleens: interferon-producing killer DCs (IKDCs), plasmacytoid DCs (PDCs), and conventional DCs (cDCs). Results identify IKDCs as a distinct DC lineage and provide insight into the role of IKDCs in linking innate and adaptive immunity.", "type": "Expression profiling by array", "pubmed_id": "16444266", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3691", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS1658", "description": "conventional dendritic", "sample_id": [ "GSM85343", "GSM85344" ], "type": "cell type", "id": "GDS1658_1" }, { "dataset_id": "GDS1658", "description": "plasmacytoid dendritic", "sample_id": [ "GSM85345", "GSM85346" ], "type": "cell type", "id": "GDS1658_2" }, { "dataset_id": "GDS1658", "description": "interferon producing killer dendritic", "sample_id": [ "GSM85341", "GSM85342" ], "type": "cell type", "id": "GDS1658_3" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1658", "version": 1.0, "instances": "6", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1658.tab", "compression": "gz" } ], [ [ "GDS1660.tab" ], { "title": "Fetal alcohol exposure effect on hippocampus", "description": "Analysis of hippocampi of 5-day-old animals subjected to fetal alcohol exposure (FAE) with 5% ETOH. FAE affects the development and function of the hippocampus.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE1997", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1660", "description": "control", "sample_id": [ "GSM35871", "GSM35872", "GSM35875" ], "type": "agent", "id": "GDS1660_1" }, { "dataset_id": "GDS1660", "description": "fetal alcohol exposure", "sample_id": [ "GSM35873", "GSM35874" ], "type": "agent", "id": "GDS1660_2" }, { "dataset_id": "GDS1660", "description": "liquid diet", "sample_id": [ "GSM35873", "GSM35874", "GSM35875" ], "type": "protocol", "id": "GDS1660_3" }, { "dataset_id": "GDS1660", "description": "solid diet", "sample_id": [ "GSM35871", "GSM35872" ], "type": "protocol", "id": "GDS1660_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1660", "version": 1.0, "instances": "5", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1660.tab", "compression": "gz" } ], [ [ "GDS1661.tab" ], { "title": "Transcription factor Egr3 expression effect on primary myotubes (MG-430A)", "description": "Analysis of primary myotubes expressing wild-type or inactive truncated Egr3. Transcription factor Egr3 activity is critical for the development of muscle spindles, skeletal muscle stretch receptors that mediate axial and limb proprioception.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1998", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1661", "description": "wild-type Egr3", "sample_id": [ "GSM35878", "GSM35880" ], "type": "genotype/variation", "id": "GDS1661_1" }, { "dataset_id": "GDS1661", "description": "truncated Egr3", "sample_id": [ "GSM35876", "GSM35882" ], "type": "genotype/variation", "id": "GDS1661_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1661", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1661.tab", "compression": "gz" } ], [ [ "GDS1662.tab" ], { "title": "Enigma mitochondrial protein knockdown", "description": "Analysis of Kc-167 cells following knockdown of Enigma (Egm) using RNAi. Egm is a mitochondrial protein with homology to enzymes of the beta-oxidation of fatty acids. Results provide insight into the mechanisms underlying the increased oxidative stress tolerance conferred by decreased Egm levels.", "type": "Expression profiling by array", "pubmed_id": "16434470", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE3566", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS1662", "description": "control", "sample_id": [ "GSM81914", "GSM81915", "GSM81916" ], "type": "protocol", "id": "GDS1662_1" }, { "dataset_id": "GDS1662", "description": "Enigma knockdown", "sample_id": [ "GSM81917", "GSM81918", "GSM81919" ], "type": "protocol", "id": "GDS1662_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1662", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1662.tab", "compression": "gz" } ], [ [ "GDS1663.tab" ], { "title": "Expression data from different research centers", "description": "Comparison of expression data from the Translational Genomics Research Institute to that from the Children's National Medical Center in Washington, DC. Data consists of normal kidney, liver, and spleen expression profiles.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE2004", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1663", "description": "Children's National Medical Center in Washington, DC", "sample_id": [ "GSM35979", "GSM35980", "GSM35981", "GSM35982", "GSM35983", "GSM35984", "GSM35985", "GSM35986", "GSM35987", "GSM35988", "GSM35989", "GSM35990", "GSM36003" ], "type": "other", "id": "GDS1663_1" }, { "dataset_id": "GDS1663", "description": "Translational Genomics Research Institute", "sample_id": [ "GSM35991", "GSM35992", "GSM35993", "GSM35994", "GSM35995", "GSM35996", "GSM35997", "GSM35998", "GSM35999", "GSM36000", "GSM36001", "GSM36002" ], "type": "other", "id": "GDS1663_2" }, { "dataset_id": "GDS1663", "description": "universal RNA", "sample_id": [ "GSM35988", "GSM35989", "GSM35990", "GSM36000", "GSM36001", "GSM36002" ], "type": "tissue", "id": "GDS1663_3" }, { "dataset_id": "GDS1663", "description": "kidney", "sample_id": [ "GSM35979", "GSM35980", "GSM35981", "GSM35991", "GSM35992", "GSM35993", "GSM36003" ], "type": "tissue", "id": "GDS1663_4" }, { "dataset_id": "GDS1663", "description": "liver", "sample_id": [ "GSM35982", "GSM35983", "GSM35984", "GSM35994", "GSM35995", "GSM35996" ], "type": "tissue", "id": "GDS1663_5" }, { "dataset_id": "GDS1663", "description": "spleen", "sample_id": [ "GSM35985", "GSM35986", "GSM35987", "GSM35997", "GSM35998", "GSM35999" ], "type": "tissue", "id": "GDS1663_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1663", "version": 1.0, "instances": "25", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1663.tab", "compression": "gz" } ], [ [ "GDS1664.tab" ], { "title": "Parathyroid hormone-related protein knockdown effect on breast cancer cells", "description": "Analysis of MDA-MB-231 breast cancer cells depleted for parathyroid hormone-related protein (PTHrP) using siRNA. PTHrP affects the proliferative and invasive activities of breast cancer cells and regulates their sensitivity to apoptotic stimuli. Results identify PTHrP-regulated tumor-relevant genes.", "type": "Expression profiling by array", "pubmed_id": "16551631", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4292", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS1664", "description": "control", "sample_id": [ "GSM98055", "GSM98056", "GSM98057" ], "type": "protocol", "id": "GDS1664_1" }, { "dataset_id": "GDS1664", "description": "PTHrP knockdown", "sample_id": [ "GSM98058", "GSM98059", "GSM98060" ], "type": "protocol", "id": "GDS1664_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1664", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1664.tab", "compression": "gz" } ], [ [ "GDS1665.tab" ], { "title": "Papillary thyroid carcinoma", "description": "Analysis of papillary thyroid carcinoma (PTC) tumors from 9 patients. PTC accounts for about 80% of all thyroid cancers. These results, together with those obtained from custom miRNA chips, indicate the involvement of several miRNAs and the receptor tyrosine kinase KIT in PTC pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "16365291", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE3467", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS1665", "description": "normal", "sample_id": [ "GSM77362", "GSM77364", "GSM77366", "GSM77368", "GSM77370", "GSM77372", "GSM77374", "GSM77376", "GSM77378" ], "type": "disease state", "id": "GDS1665_1" }, { "dataset_id": "GDS1665", "description": "papillary thyroid carcinoma", "sample_id": [ "GSM77363", "GSM77365", "GSM77367", "GSM77369", "GSM77371", "GSM77373", "GSM77375", "GSM77377", "GSM77379" ], "type": "disease state", "id": "GDS1665_2" }, { "dataset_id": "GDS1665", "description": "patient 14", "sample_id": [ "GSM77362", "GSM77363" ], "type": "individual", "id": "GDS1665_3" }, { "dataset_id": "GDS1665", "description": "patient 26", "sample_id": [ "GSM77364", "GSM77365" ], "type": "individual", "id": "GDS1665_4" }, { "dataset_id": "GDS1665", "description": "patient 50", "sample_id": [ "GSM77366", "GSM77367" ], "type": "individual", "id": "GDS1665_5" }, { "dataset_id": "GDS1665", "description": "patient 69", "sample_id": [ "GSM77368", "GSM77369" ], "type": "individual", "id": "GDS1665_6" }, { "dataset_id": "GDS1665", "description": "patient 71", "sample_id": [ "GSM77370", "GSM77371" ], "type": "individual", "id": "GDS1665_7" }, { "dataset_id": "GDS1665", "description": "patient 11", "sample_id": [ "GSM77372", "GSM77373" ], "type": "individual", "id": "GDS1665_8" }, { "dataset_id": "GDS1665", "description": "patient 67", "sample_id": [ "GSM77374", "GSM77375" ], "type": "individual", "id": "GDS1665_9" }, { "dataset_id": "GDS1665", "description": "patient 77", "sample_id": [ "GSM77376", "GSM77377" ], "type": "individual", "id": "GDS1665_10" }, { "dataset_id": "GDS1665", "description": "patient 86", "sample_id": [ "GSM77378", "GSM77379" ], "type": "individual", "id": "GDS1665_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1665", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1665.tab", "compression": "gz" } ], [ [ "GDS1667.tab" ], { "title": "Head and neck squamous cell carcinoma tumors harboring human papillomavirus", "description": "Analysis of 8 head and neck squamous cell carcinoma (HNSCC) tumors positive for human papilloma virus (HPV). 28 HNSCC HPV negative tumors examined. Between 15% and 35% of HNSCCs harbor HPV DNA. Results provide insight into the effect of HPV infection in HNSCC.", "type": "Expression profiling by array", "pubmed_id": [ "16467079", "16943533" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE3292", "order": "none", "update_date": "Sep 01 2006", "subsets": [ { "dataset_id": "GDS1667", "description": "HPV negative", "sample_id": [ "GSM73675", "GSM73665", "GSM73666", "GSM73667", "GSM73668", "GSM73669", "GSM73670", "GSM73671", "GSM73672", "GSM73673", "GSM73674", "GSM73676", "GSM73677", "GSM73678", "GSM73653", "GSM73655", "GSM73656", "GSM73657", "GSM73658", "GSM73659", "GSM73660", "GSM73661", "GSM73662", "GSM73663", "GSM73664", "GSM73679", "GSM73680", "GSM73688" ], "type": "infection", "id": "GDS1667_1" }, { "dataset_id": "GDS1667", "description": "HPV positive", "sample_id": [ "GSM73684", "GSM73685", "GSM73686", "GSM73687", "GSM73681", "GSM73654", "GSM73682", "GSM73683" ], "type": "infection", "id": "GDS1667_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1667", "version": 1.0, "instances": "36", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1667.tab", "compression": "gz" } ], [ [ "GDS167.tab" ], { "title": "Autoimmune disease mechanisms", "description": "Examination of medullary thymic epithelial cells from aire-deficient mice. aire is autoimmune regulator gene. Aim to understand autoimmune disease mechanisms, esp. autoimmune polyendocrinopathy candidiasis ectodermal dystrophy (APECED).", "type": "Expression profiling by array", "pubmed_id": "12376594", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE85", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS167", "description": "wildtype", "sample_id": [ "GSM2444", "GSM2445", "GSM2446" ], "type": "strain", "id": "GDS167_1" }, { "dataset_id": "GDS167", "description": "aire-deficient", "sample_id": [ "GSM2447", "GSM2448", "GSM2449" ], "type": "strain", "id": "GDS167_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS167", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS167.tab", "compression": "gz" } ], [ [ "GDS1672.tab" ], { "title": "Keratinocyte stem cell\u2013enriched hair follicle bulge cells", "description": "Comparison of outer root sheath (ORS) cells of the hair follicle bulge with other defined ORS cell subpopulations within the follicle. Results provide insight into the biological distinctiveness of hair follicle bulge cells, suggesting the bulge is a repository for keratinocyte stem cells (KSCs).", "type": "Expression profiling by array", "pubmed_id": "16395407", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3419", "order": "none", "update_date": "Jan 12 2007", "subsets": [ { "dataset_id": "GDS1672", "description": "non-bulge outer root sheath region", "sample_id": [ "GSM77092", "GSM77094", "GSM77096", "GSM77098", "GSM77100", "GSM77101", "GSM77103", "GSM77105", "GSM77106" ], "type": "tissue", "id": "GDS1672_1" }, { "dataset_id": "GDS1672", "description": "bulge outer root sheath region", "sample_id": [ "GSM77091", "GSM77093", "GSM77095", "GSM77097", "GSM77099", "GSM77102", "GSM77104" ], "type": "tissue", "id": "GDS1672_2" }, { "dataset_id": "GDS1672", "description": "suprabulbar", "sample_id": [ "GSM77101", "GSM77106" ], "type": "cell type", "id": "GDS1672_3" }, { "dataset_id": "GDS1672", "description": "inner bulge", "sample_id": [ "GSM77100", "GSM77105" ], "type": "cell type", "id": "GDS1672_4" }, { "dataset_id": "GDS1672", "description": "sub-bulge", "sample_id": [ "GSM77092", "GSM77094", "GSM77096", "GSM77098", "GSM77103" ], "type": "cell type", "id": "GDS1672_5" }, { "dataset_id": "GDS1672", "description": "upper bulge", "sample_id": [ "GSM77099", "GSM77104" ], "type": "cell type", "id": "GDS1672_6" }, { "dataset_id": "GDS1672", "description": "bulge", "sample_id": [ "GSM77091", "GSM77093", "GSM77095", "GSM77097", "GSM77102" ], "type": "cell type", "id": "GDS1672_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1672", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1672.tab", "compression": "gz" } ], [ [ "GDS1673.tab" ], { "title": "Non-diseased lung tissue", "description": "Analysis of non-diseased lungs from 23 multi-organ donors. Upper and lower lobe peripheral sections of the lung were examined. Donors varied in age, sex, smoking history, and ethnicity. Results provide a reference for microarray studies of pulmonary disease.", "type": "Expression profiling by array", "pubmed_id": "16498083", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE1643", "order": "none", "update_date": "Jan 12 2007", "subsets": [ { "dataset_id": "GDS1673", "description": "lower lobe", "sample_id": [ "GSM27778", "GSM27779", "GSM27781", "GSM27783", "GSM27785", "GSM27786", "GSM27788", "GSM27789", "GSM27791", "GSM27793", "GSM27794", "GSM27795", "GSM27796", "GSM27797", "GSM27798", "GSM27799", "GSM27800", "GSM27801", "GSM27802", "GSM27803", "GSM27804", "GSM27825", "GSM27826", "GSM27827", "GSM27828", "GSM27829", "GSM27831" ], "type": "tissue", "id": "GDS1673_1" }, { "dataset_id": "GDS1673", "description": "upper lobe", "sample_id": [ "GSM27780", "GSM27782", "GSM27784", "GSM27787", "GSM27790", "GSM27792", "GSM27820", "GSM27821", "GSM27822", "GSM27823", "GSM27824", "GSM27830", "GSM27832" ], "type": "tissue", "id": "GDS1673_2" }, { "dataset_id": "GDS1673", "description": "male", "sample_id": [ "GSM27778", "GSM27781", "GSM27782", "GSM27785", "GSM27786", "GSM27787", "GSM27789", "GSM27790", "GSM27791", "GSM27792", "GSM27793", "GSM27794", "GSM27796", "GSM27826", "GSM27829", "GSM27830" ], "type": "gender", "id": "GDS1673_3" }, { "dataset_id": "GDS1673", "description": "female", "sample_id": [ "GSM27779", "GSM27780", "GSM27783", "GSM27784", "GSM27788", "GSM27795", "GSM27797", "GSM27798", "GSM27799", "GSM27800", "GSM27801", "GSM27802", "GSM27803", "GSM27804", "GSM27820", "GSM27821", "GSM27822", "GSM27823", "GSM27824", "GSM27825", "GSM27827", "GSM27828", "GSM27831", "GSM27832" ], "type": "gender", "id": "GDS1673_4" }, { "dataset_id": "GDS1673", "description": "non-smoker", "sample_id": [ "GSM27778", "GSM27781", "GSM27782", "GSM27783", "GSM27784", "GSM27786", "GSM27787", "GSM27795", "GSM27796", "GSM27798", "GSM27800", "GSM27801", "GSM27802", "GSM27803", "GSM27804", "GSM27820", "GSM27821", "GSM27822", "GSM27823", "GSM27824" ], "type": "stress", "id": "GDS1673_5" }, { "dataset_id": "GDS1673", "description": "former smoker", "sample_id": [ "GSM27779", "GSM27780", "GSM27788", "GSM27791", "GSM27792", "GSM27794", "GSM27797", "GSM27799", "GSM27829", "GSM27830" ], "type": "stress", "id": "GDS1673_6" }, { "dataset_id": "GDS1673", "description": "smoker", "sample_id": [ "GSM27785", "GSM27789", "GSM27790", "GSM27793", "GSM27825", "GSM27826", "GSM27827", "GSM27828", "GSM27831", "GSM27832" ], "type": "stress", "id": "GDS1673_7" }, { "dataset_id": "GDS1673", "description": "between 20 and 29 y", "sample_id": [ "GSM27793", "GSM27791", "GSM27792", "GSM27786", "GSM27787", "GSM27798" ], "type": "age", "id": "GDS1673_8" }, { "dataset_id": "GDS1673", "description": "between 30 and 39 y", "sample_id": [ "GSM27781", "GSM27782", "GSM27826", "GSM27827" ], "type": "age", "id": "GDS1673_9" }, { "dataset_id": "GDS1673", "description": "between 40 and 49 y", "sample_id": [ "GSM27828", "GSM27794", "GSM27783", "GSM27784" ], "type": "age", "id": "GDS1673_10" }, { "dataset_id": "GDS1673", "description": "between 50 and 59 y", "sample_id": [ "GSM27825", "GSM27799", "GSM27800", "GSM27801", "GSM27802", "GSM27803", "GSM27804", "GSM27820", "GSM27821", "GSM27822", "GSM27823", "GSM27824", "GSM27778", "GSM27831", "GSM27832" ], "type": "age", "id": "GDS1673_11" }, { "dataset_id": "GDS1673", "description": "between 60 and 69 y", "sample_id": [ "GSM27779", "GSM27780", "GSM27788", "GSM27796", "GSM27785", "GSM27829", "GSM27830" ], "type": "age", "id": "GDS1673_12" }, { "dataset_id": "GDS1673", "description": "over 70 y", "sample_id": [ "GSM27797", "GSM27789", "GSM27790", "GSM27795" ], "type": "age", "id": "GDS1673_13" }, { "dataset_id": "GDS1673", "description": "African American", "sample_id": [ "GSM27785", "GSM27800", "GSM27801", "GSM27802", "GSM27803", "GSM27804", "GSM27820", "GSM27821", "GSM27822", "GSM27823", "GSM27824", "GSM27828", "GSM27829", "GSM27830" ], "type": "other", "id": "GDS1673_14" }, { "dataset_id": "GDS1673", "description": "Caucasian", "sample_id": [ "GSM27793", "GSM27778", "GSM27779", "GSM27780", "GSM27783", "GSM27784", "GSM27786", "GSM27787", "GSM27788", "GSM27789", "GSM27790", "GSM27791", "GSM27792", "GSM27794", "GSM27795", "GSM27796", "GSM27797", "GSM27798", "GSM27799", "GSM27825", "GSM27826", "GSM27827", "GSM27831", "GSM27832" ], "type": "other", "id": "GDS1673_15" }, { "dataset_id": "GDS1673", "description": "Hispanic", "sample_id": [ "GSM27781", "GSM27782" ], "type": "other", "id": "GDS1673_16" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1673", "version": 1.0, "instances": "40", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1673.tab", "compression": "gz" } ], [ [ "GDS1674.tab" ], { "title": "Histone H3 and H4 amino terminal deletions", "description": "Expression profiling of H3 and H4 amino terminal deletion mutants grown under conditions of amino acid starvation, which induce Gcn4p activated transcription. Results provide insight into the contribution of histone amino termini modifications to gene expression.", "type": "Expression profiling by array", "pubmed_id": "16461773", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE4135", "order": "none", "update_date": "Jan 17 2007", "subsets": [ { "dataset_id": "GDS1674", "description": "H3 wild type", "sample_id": [ "GSM94555", "GSM94587", "GSM94589", "GSM94590" ], "type": "strain", "id": "GDS1674_1" }, { "dataset_id": "GDS1674", "description": "H3 delta(1-28)", "sample_id": [ "GSM94403", "GSM94538", "GSM94539", "GSM94540" ], "type": "strain", "id": "GDS1674_2" }, { "dataset_id": "GDS1674", "description": "H4 wild type", "sample_id": [ "GSM94591", "GSM94592", "GSM94593" ], "type": "strain", "id": "GDS1674_3" }, { "dataset_id": "GDS1674", "description": "H4 delta(2-26)", "sample_id": [ "GSM94594", "GSM94595", "GSM94596" ], "type": "strain", "id": "GDS1674_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS1674", "version": 1.0, "instances": "14", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1674.tab", "compression": "gz" } ], [ [ "GDS1675.tab" ], { "title": "Werner syndrome protein and poly(ADP-ribose) polymerase-1 null mutants", "description": "Analysis of embryonic fibroblast cells lacking Werner syndrome (WS) protein (Wrn), or poly(ADP-ribose) polymerase-1 (PARP-1), or both. Mutations in Wrn or PARP-1 result in genomic instability. Results provide insight into tumor progression, senescence, oxidative stress and aging.", "type": "Expression profiling by array", "pubmed_id": "16195394", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE3359", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS1675", "description": "Wrn null", "sample_id": [ "GSM75885", "GSM75886" ], "type": "genotype/variation", "id": "GDS1675_1" }, { "dataset_id": "GDS1675", "description": "PARP-1 null", "sample_id": [ "GSM75931", "GSM75985" ], "type": "genotype/variation", "id": "GDS1675_2" }, { "dataset_id": "GDS1675", "description": "Wrn PARP-1 double null", "sample_id": [ "GSM75986", "GSM75987" ], "type": "genotype/variation", "id": "GDS1675_3" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS1675", "version": 1.0, "instances": "6", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1675.tab", "compression": "gz" } ], [ [ "GDS1676.tab" ], { "title": "T cell leukemia cell response to human herpesvirus 6 infection: time course", "description": "Analysis of an adult T cell leukemia cell line (TaY) following infection with human herpesvirus type 6B strain OK. Cells examined up to 5 days post-infection. Chronically-infected TaY cells were also examined. Results identify candidate genes that regulate the immune response during viral infection.", "type": "Expression profiling by array", "pubmed_id": "16140273", "platform": "GPL2531", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "2100", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE2939", "order": "none", "update_date": "Jan 19 2007", "subsets": [ { "dataset_id": "GDS1676", "description": "acute", "sample_id": [ "GSM63816", "GSM63817", "GSM63818", "GSM63819", "GSM63820", "GSM63821" ], "type": "infection", "id": "GDS1676_1" }, { "dataset_id": "GDS1676", "description": "chronic", "sample_id": [ "GSM64055", "GSM64056" ], "type": "infection", "id": "GDS1676_2" }, { "dataset_id": "GDS1676", "description": "not applicable", "sample_id": [ "GSM64055", "GSM64056" ], "type": "time", "id": "GDS1676_3" }, { "dataset_id": "GDS1676", "description": "1 d", "sample_id": [ "GSM63816", "GSM63817" ], "type": "time", "id": "GDS1676_4" }, { "dataset_id": "GDS1676", "description": "3 d", "sample_id": [ "GSM63818", "GSM63819" ], "type": "time", "id": "GDS1676_5" }, { "dataset_id": "GDS1676", "description": "5 d", "sample_id": [ "GSM63820", "GSM63821" ], "type": "time", "id": "GDS1676_6" }, { "dataset_id": "GDS1676", "description": "5 U/ml IL-2", "sample_id": [ "GSM64056" ], "type": "dose", "id": "GDS1676_7" }, { "dataset_id": "GDS1676", "description": "20 U/ml IL-2", "sample_id": [ "GSM63816", "GSM63817", "GSM63818", "GSM63819", "GSM63820", "GSM63821", "GSM64055" ], "type": "dose", "id": "GDS1676_8" } ], "taxid": "9606", "genes": 719, "aggregation_function": "mean", "name": "GDS1676", "version": 1.0, "instances": "8", "variables": 723, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1676.tab", "compression": "gz" } ], [ [ "GDS1677.tab" ], { "title": "Cumulus oocyte complex during ovulation: time course", "description": "Analysis of cumulus oocyte complexes (COCs) isolated from ovaries prior to ovulation or from the oviduct after ovulation. Follicular growth stimulated using equine chorionic gonadotropin (CG) and ovulation induced using human CG. Results identify candidate genes in COCs that impact ovulation.", "type": "Expression profiling by array", "pubmed_id": "16455817", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE4260", "order": "none", "update_date": "May 01 2006", "subsets": [ { "dataset_id": "GDS1677", "description": "control", "sample_id": [ "GSM97169", "GSM97170" ], "type": "agent", "id": "GDS1677_1" }, { "dataset_id": "GDS1677", "description": "human CG", "sample_id": [ "GSM97171", "GSM97172", "GSM97173", "GSM97174" ], "type": "agent", "id": "GDS1677_2" }, { "dataset_id": "GDS1677", "description": "0 h", "sample_id": [ "GSM97169", "GSM97170" ], "type": "time", "id": "GDS1677_3" }, { "dataset_id": "GDS1677", "description": "8 h", "sample_id": [ "GSM97171", "GSM97172" ], "type": "time", "id": "GDS1677_4" }, { "dataset_id": "GDS1677", "description": "16 h", "sample_id": [ "GSM97173", "GSM97174" ], "type": "time", "id": "GDS1677_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1677", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1677.tab", "compression": "gz" } ], [ [ "GDS1678.tab" ], { "title": "Quercetin effect on hepatic cytochrome P-450 oxidoreductase null mutants", "description": "Analysis of cytochrome-P450 oxidoreductase (POR) null mutants at 24 hours following consumption of anti-carcinogenic flavonoid, quercetin. Results identify a diminished transcriptomic response in KO compared to WT in all tissues examined and provide insight into the bioactive nature of quercetin.", "type": "Expression profiling by array", "pubmed_id": "16455785", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE4262", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1678", "description": "wild type", "sample_id": [ "GSM96781", "GSM96782", "GSM96783", "GSM96784", "GSM96785", "GSM96786", "GSM96861", "GSM96862", "GSM96863", "GSM96864", "GSM96865", "GSM96866", "GSM96873", "GSM96874", "GSM96875", "GSM96876", "GSM96877", "GSM96878", "GSM96885", "GSM96886", "GSM96887", "GSM96888", "GSM96889", "GSM96890" ], "type": "genotype/variation", "id": "GDS1678_1" }, { "dataset_id": "GDS1678", "description": "POR null", "sample_id": [ "GSM96787", "GSM96788", "GSM96789", "GSM96790", "GSM96791", "GSM96792", "GSM96867", "GSM96868", "GSM96869", "GSM96870", "GSM96871", "GSM96872", "GSM96879", "GSM96880", "GSM96881", "GSM96882", "GSM96883", "GSM96884", "GSM96891", "GSM96892", "GSM96893", "GSM96894", "GSM96895", "GSM96896" ], "type": "genotype/variation", "id": "GDS1678_2" }, { "dataset_id": "GDS1678", "description": "untreated", "sample_id": [ "GSM96781", "GSM96782", "GSM96783", "GSM96787", "GSM96788", "GSM96789", "GSM96861", "GSM96862", "GSM96863", "GSM96867", "GSM96868", "GSM96869", "GSM96873", "GSM96874", "GSM96875", "GSM96879", "GSM96880", "GSM96881", "GSM96885", "GSM96886", "GSM96887", "GSM96891", "GSM96892", "GSM96893" ], "type": "agent", "id": "GDS1678_3" }, { "dataset_id": "GDS1678", "description": "quercetin", "sample_id": [ "GSM96784", "GSM96785", "GSM96786", "GSM96790", "GSM96791", "GSM96792", "GSM96864", "GSM96865", "GSM96866", "GSM96870", "GSM96871", "GSM96872", "GSM96876", "GSM96877", "GSM96878", "GSM96882", "GSM96883", "GSM96884", "GSM96888", "GSM96889", "GSM96890", "GSM96894", "GSM96895", "GSM96896" ], "type": "agent", "id": "GDS1678_4" }, { "dataset_id": "GDS1678", "description": "colon", "sample_id": [ "GSM96781", "GSM96782", "GSM96783", "GSM96784", "GSM96785", "GSM96786", "GSM96787", "GSM96788", "GSM96789", "GSM96790", "GSM96791", "GSM96792" ], "type": "tissue", "id": "GDS1678_5" }, { "dataset_id": "GDS1678", "description": "ileum", "sample_id": [ "GSM96861", "GSM96862", "GSM96863", "GSM96864", "GSM96865", "GSM96866", "GSM96867", "GSM96868", "GSM96869", "GSM96870", "GSM96871", "GSM96872" ], "type": "tissue", "id": "GDS1678_6" }, { "dataset_id": "GDS1678", "description": "jejunum", "sample_id": [ "GSM96873", "GSM96874", "GSM96875", "GSM96876", "GSM96877", "GSM96878", "GSM96879", "GSM96880", "GSM96881", "GSM96882", "GSM96883", "GSM96884" ], "type": "tissue", "id": "GDS1678_7" }, { "dataset_id": "GDS1678", "description": "liver", "sample_id": [ "GSM96885", "GSM96886", "GSM96887", "GSM96888", "GSM96889", "GSM96890", "GSM96891", "GSM96892", "GSM96893", "GSM96894", "GSM96895", "GSM96896" ], "type": "tissue", "id": "GDS1678_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1678", "version": 1.0, "instances": "48", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1678.tab", "compression": "gz" } ], [ [ "GDS1679.tab" ], { "title": "Exhaustive endurance exercise effect on skeletal muscle: time course", "description": "Expression profiling of vastus lateralis muscles 3 and 48 hours after a 75-minute bout of high-intensity cycling. Results identify transcriptional pathways activated in skeletal muscles recovering from endurance exercise.", "type": "Expression profiling by array", "pubmed_id": "15985525", "platform": "GPL3457", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE4247", "order": "ordered", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1679", "description": "3 h", "sample_id": [ "GSM96804", "GSM96806", "GSM96807", "GSM96808" ], "type": "time", "id": "GDS1679_1" }, { "dataset_id": "GDS1679", "description": "48 h", "sample_id": [ "GSM96809", "GSM96811", "GSM96812", "GSM96813" ], "type": "time", "id": "GDS1679_2" } ], "taxid": "9606", "genes": 7655, "aggregation_function": "mean", "name": "GDS1679", "version": 1.0, "instances": "8", "variables": 7657, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1679.tab", "compression": "gz" } ], [ [ "GDS168.tab" ], { "title": "Dietary effects of long chain polyunsaturated fatty acids (Mu11K-A)", "description": "Dietary effects of long chain polyunsaturated fatty acids from arachidonate-rich fungal oil and fish oil on hepatic and hippocampal gene expression. Identified broad-spectrum effects on major lipid metabolism transcription factors.", "type": "Expression profiling by array", "pubmed_id": [ "12095422", "12617750" ], "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE91", "order": "none", "update_date": "Apr 22 2003", "subsets": [ { "dataset_id": "GDS168", "description": "hippocampus", "sample_id": [ "GSM2558", "GSM2560", "GSM2562" ], "type": "tissue", "id": "GDS168_1" }, { "dataset_id": "GDS168", "description": "liver", "sample_id": [ "GSM2565", "GSM2567", "GSM2569", "GSM2571", "GSM2573" ], "type": "tissue", "id": "GDS168_2" }, { "dataset_id": "GDS168", "description": "control diet", "sample_id": [ "GSM2558", "GSM2565", "GSM2567" ], "type": "protocol", "id": "GDS168_3" }, { "dataset_id": "GDS168", "description": "fungal oil diet", "sample_id": [ "GSM2560", "GSM2569" ], "type": "protocol", "id": "GDS168_4" }, { "dataset_id": "GDS168", "description": "fish oil diet", "sample_id": [ "GSM2562", "GSM2571" ], "type": "protocol", "id": "GDS168_5" }, { "dataset_id": "GDS168", "description": "fungal and fish oil diet", "sample_id": [ "GSM2573" ], "type": "protocol", "id": "GDS168_6" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS168", "version": 1.0, "instances": "8", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS168.tab", "compression": "gz" } ], [ [ "GDS1681.tab" ], { "title": "Dendritic cell response to measles virus infection: time course", "description": "Analysis of dendritic cells (DCs) for up to 24 hours after infection with measles virus (MV). MV induces immunosuppression followed by lasting immunity. DCs appear to play a role in this effect. Results provide insight into MV-DC interactions and suggest mechanisms for MV-modulated immune response.", "type": "Expression profiling by array", "pubmed_id": "16492729", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE980", "order": "none", "update_date": "Apr 26 2006", "subsets": [ { "dataset_id": "GDS1681", "description": "untreated", "sample_id": [ "GSM15457", "GSM15458", "GSM15459", "GSM15460" ], "type": "agent", "id": "GDS1681_1" }, { "dataset_id": "GDS1681", "description": "measles virus", "sample_id": [ "GSM15461", "GSM15462", "GSM15463", "GSM15464", "GSM15465", "GSM15467", "GSM15468", "GSM15469", "GSM15470", "GSM15471" ], "type": "agent", "id": "GDS1681_2" }, { "dataset_id": "GDS1681", "description": "0 h", "sample_id": [ "GSM15457", "GSM15458", "GSM15459", "GSM15460" ], "type": "time", "id": "GDS1681_3" }, { "dataset_id": "GDS1681", "description": "3 h", "sample_id": [ "GSM15461", "GSM15462" ], "type": "time", "id": "GDS1681_4" }, { "dataset_id": "GDS1681", "description": "6 h", "sample_id": [ "GSM15463", "GSM15464", "GSM15465" ], "type": "time", "id": "GDS1681_5" }, { "dataset_id": "GDS1681", "description": "12 h", "sample_id": [ "GSM15467", "GSM15468" ], "type": "time", "id": "GDS1681_6" }, { "dataset_id": "GDS1681", "description": "24 h", "sample_id": [ "GSM15469", "GSM15470", "GSM15471" ], "type": "time", "id": "GDS1681_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1681", "version": 1.0, "instances": "14", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1681.tab", "compression": "gz" } ], [ [ "GDS1684.tab" ], { "title": "Cardiac allograft rejection: time course", "description": "Expression profiling of endomyocardial tissues from 3 subjects before, during, and after a rejection episode. Cardiac allograft rejection is a significant clinical problem in the early phase after heart transplantation and requires frequent surveillance with endomyocardial biopsy.", "type": "Expression profiling by array", "pubmed_id": "16780603", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4315", "order": "none", "update_date": "May 01 2006", "subsets": [ { "dataset_id": "GDS1684", "description": "Before rejection", "sample_id": [ "GSM98603", "GSM98617", "GSM98620" ], "type": "time", "id": "GDS1684_1" }, { "dataset_id": "GDS1684", "description": "During rejection", "sample_id": [ "GSM98614", "GSM98618", "GSM98621" ], "type": "time", "id": "GDS1684_2" }, { "dataset_id": "GDS1684", "description": "After rejection", "sample_id": [ "GSM98616", "GSM98619", "GSM98623" ], "type": "time", "id": "GDS1684_3" }, { "dataset_id": "GDS1684", "description": "Subject 1", "sample_id": [ "GSM98603", "GSM98614", "GSM98616" ], "type": "individual", "id": "GDS1684_4" }, { "dataset_id": "GDS1684", "description": "Subject 12", "sample_id": [ "GSM98617", "GSM98618", "GSM98619" ], "type": "individual", "id": "GDS1684_5" }, { "dataset_id": "GDS1684", "description": "Subject 8", "sample_id": [ "GSM98620", "GSM98621", "GSM98623" ], "type": "individual", "id": "GDS1684_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1684", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1684.tab", "compression": "gz" } ], [ [ "GDS1685.tab" ], { "title": "Hereditary gingival fibromatosis", "description": "Analysis of gingival tissues from a patient with hereditary gingival fibromatosis (HGF). HGF is a benign disorder characterized by a slow progressive enlargement of the gingiva. This hypertrophic overgrowth of the gingiva may completely cover the teeth.", "type": "Expression profiling by array", "pubmed_id": "17075716", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4250", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS1685", "description": "normal", "sample_id": [ "GSM96897", "GSM96898" ], "type": "disease state", "id": "GDS1685_1" }, { "dataset_id": "GDS1685", "description": "hereditary gingival fibromatosis", "sample_id": [ "GSM96899", "GSM96900" ], "type": "disease state", "id": "GDS1685_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1685", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1685.tab", "compression": "gz" } ], [ [ "GDS1686.tab" ], { "title": "Sleep deprivation effect on the brain: time course", "description": "Analysis of brain of Canton-S females deprived of sleep by perturbations during their normal sleep period. Perturbation effect also assessed during their active period to control for its effect during sleep deprivation. Results suggest processes altered during prolonged wakefulness and during sleep.", "type": "Expression profiling by array", "pubmed_id": "16954408", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE4174", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1686", "description": "active period control", "sample_id": [ "GSM95424", "GSM95425", "GSM95444" ], "type": "protocol", "id": "GDS1686_1" }, { "dataset_id": "GDS1686", "description": "unperturbed during active period", "sample_id": [ "GSM95324", "GSM95421", "GSM95423" ], "type": "protocol", "id": "GDS1686_2" }, { "dataset_id": "GDS1686", "description": "perturbed during active period", "sample_id": [ "GSM95325", "GSM95420", "GSM95422" ], "type": "protocol", "id": "GDS1686_3" }, { "dataset_id": "GDS1686", "description": "sleep period control", "sample_id": [ "GSM95290", "GSM95292", "GSM95293" ], "type": "protocol", "id": "GDS1686_4" }, { "dataset_id": "GDS1686", "description": "sleep", "sample_id": [ "GSM95112", "GSM95114", "GSM95237", "GSM95239", "GSM95242", "GSM95256", "GSM95262", "GSM95263", "GSM95291" ], "type": "protocol", "id": "GDS1686_5" }, { "dataset_id": "GDS1686", "description": "sleep deprived", "sample_id": [ "GSM95194", "GSM95236", "GSM95259", "GSM95260", "GSM95261", "GSM95294", "GSM95295", "GSM95296", "GSM95323" ], "type": "protocol", "id": "GDS1686_6" }, { "dataset_id": "GDS1686", "description": "0 h", "sample_id": [ "GSM95290", "GSM95292", "GSM95293", "GSM95424", "GSM95425", "GSM95444" ], "type": "time", "id": "GDS1686_7" }, { "dataset_id": "GDS1686", "description": "2 h", "sample_id": [ "GSM95236", "GSM95259", "GSM95262", "GSM95263", "GSM95291", "GSM95295" ], "type": "time", "id": "GDS1686_8" }, { "dataset_id": "GDS1686", "description": "4 h", "sample_id": [ "GSM95112", "GSM95114", "GSM95194", "GSM95242", "GSM95296", "GSM95323", "GSM95324", "GSM95325", "GSM95420", "GSM95421", "GSM95422", "GSM95423" ], "type": "time", "id": "GDS1686_9" }, { "dataset_id": "GDS1686", "description": "6 h", "sample_id": [ "GSM95237", "GSM95239", "GSM95256", "GSM95260", "GSM95261", "GSM95294" ], "type": "time", "id": "GDS1686_10" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1686", "version": 1.0, "instances": "30", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1686.tab", "compression": "gz" } ], [ [ "GDS1687.tab" ], { "title": "Low-shear modeled microgravity effect", "description": "Analysis of wild type BY4743 cells grown in a low-shear modeled microgravity environment (LSMMG). LSMMG environment produced using a high aspect rotating vessel. Results provide insight into the response to the microgravity environment experienced during space flight.", "type": "Expression profiling by array", "pubmed_id": "17201921", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE4136", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1687", "description": "5th generation", "sample_id": [ "GSM94606", "GSM94608", "GSM94609", "GSM94613", "GSM94614", "GSM94615" ], "type": "age", "id": "GDS1687_1" }, { "dataset_id": "GDS1687", "description": "25th generation", "sample_id": [ "GSM94610", "GSM94611", "GSM94612", "GSM94616", "GSM94617", "GSM94618" ], "type": "age", "id": "GDS1687_2" }, { "dataset_id": "GDS1687", "description": "control", "sample_id": [ "GSM94606", "GSM94608", "GSM94609", "GSM94610", "GSM94611", "GSM94612" ], "type": "stress", "id": "GDS1687_3" }, { "dataset_id": "GDS1687", "description": "low-shear modeled microgravity", "sample_id": [ "GSM94613", "GSM94614", "GSM94615", "GSM94616", "GSM94617", "GSM94618" ], "type": "stress", "id": "GDS1687_4" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS1687", "version": 1.0, "instances": "12", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1687.tab", "compression": "gz" } ], [ [ "GDS1688.tab" ], { "title": "Various lung cancer cell lines", "description": "Expression profiling of a set of 29 lung cancer cell lines consisting of 10 non-small cell adenocarcinoma, 10 small cell cancer, and 9 squamous cell cancer lines. Gene expression results analyzed in relation to the sensitivity of each cell line to commonly used anti-cancer agents.", "type": "Expression profiling by array", "pubmed_id": [ "16813650", "18606719" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE4127", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1688", "description": "non-small cell adenocarcinoma", "sample_id": [ "GSM94303", "GSM94304", "GSM94305", "GSM94306", "GSM94307", "GSM94313", "GSM94314", "GSM94317", "GSM94323", "GSM94325" ], "type": "cell line", "id": "GDS1688_1" }, { "dataset_id": "GDS1688", "description": "small cell cancer", "sample_id": [ "GSM94309", "GSM94310", "GSM94311", "GSM94312", "GSM94318", "GSM94320", "GSM94321", "GSM94322", "GSM94330", "GSM94331" ], "type": "cell line", "id": "GDS1688_2" }, { "dataset_id": "GDS1688", "description": "squamous cell cancer", "sample_id": [ "GSM94308", "GSM94315", "GSM94316", "GSM94319", "GSM94324", "GSM94326", "GSM94327", "GSM94328", "GSM94329" ], "type": "cell line", "id": "GDS1688_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1688", "version": 1.0, "instances": "29", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1688.tab", "compression": "gz" } ], [ [ "GDS169.tab" ], { "title": "Dietary effects of long chain polyunsaturated fatty acids (Mu11K-B)", "description": "Dietary effects of long chain polyunsaturated fatty acids from arachidonate-rich fungal oil and fish oil on hepatic and hippocampal gene expression. Identified broad-spectrum effects on major lipid metabolism transcription factors.", "type": "Expression profiling by array", "pubmed_id": [ "12095422", "12617750" ], "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE91", "order": "none", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS169", "description": "hippocampus", "sample_id": [ "GSM2559", "GSM2561", "GSM2563", "GSM2564" ], "type": "tissue", "id": "GDS169_1" }, { "dataset_id": "GDS169", "description": "liver", "sample_id": [ "GSM2566", "GSM2568", "GSM2570", "GSM2572", "GSM2574" ], "type": "tissue", "id": "GDS169_2" }, { "dataset_id": "GDS169", "description": "control diet", "sample_id": [ "GSM2559", "GSM2566", "GSM2568" ], "type": "protocol", "id": "GDS169_3" }, { "dataset_id": "GDS169", "description": "fungal oil diet", "sample_id": [ "GSM2561", "GSM2570" ], "type": "protocol", "id": "GDS169_4" }, { "dataset_id": "GDS169", "description": "fish oil diet", "sample_id": [ "GSM2563", "GSM2572" ], "type": "protocol", "id": "GDS169_5" }, { "dataset_id": "GDS169", "description": "fungal and fish oil", "sample_id": [ "GSM2564", "GSM2574" ], "type": "protocol", "id": "GDS169_6" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS169", "version": 1.0, "instances": "9", "variables": 6163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS169.tab", "compression": "gz" } ], [ [ "GDS1690.tab" ], { "title": "Notch receptors and Delta ligand interaction effect", "description": "Analysis of cell mixtures consisting of cultured S2 cells expressing the full length (NFull) or C-terminal truncated Notch (NDCterm) and S2 cells expressing the ligand Delta. NFull and Delta interaction induce epidermal differentiation, while NDCterm and Delta induce neuronal differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE2863", "order": "none", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS1690", "description": "control", "sample_id": [ "GSM53393", "GSM53396", "GSM53403" ], "type": "protocol", "id": "GDS1690_1" }, { "dataset_id": "GDS1690", "description": "Nfull", "sample_id": [ "GSM53397", "GSM53399", "GSM53408" ], "type": "protocol", "id": "GDS1690_2" }, { "dataset_id": "GDS1690", "description": "Delta", "sample_id": [ "GSM53390", "GSM53401", "GSM53406" ], "type": "protocol", "id": "GDS1690_3" }, { "dataset_id": "GDS1690", "description": "Nfull, Delta", "sample_id": [ "GSM53402" ], "type": "protocol", "id": "GDS1690_4" }, { "dataset_id": "GDS1690", "description": "Delta lacking intracellular domain", "sample_id": [ "GSM53388", "GSM53398" ], "type": "protocol", "id": "GDS1690_5" }, { "dataset_id": "GDS1690", "description": "Nfull, Delta lacking intracellular domain", "sample_id": [ "GSM53392", "GSM53400", "GSM53405", "GSM53409", "GSM53410", "GSM53411" ], "type": "protocol", "id": "GDS1690_6" }, { "dataset_id": "GDS1690", "description": "NDCterm", "sample_id": [ "GSM53395", "GSM53404" ], "type": "protocol", "id": "GDS1690_7" }, { "dataset_id": "GDS1690", "description": "NDCterm, Delta", "sample_id": [ "GSM53389", "GSM53391", "GSM53407", "GSM53394" ], "type": "protocol", "id": "GDS1690_8" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS1690", "version": 1.0, "instances": "24", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1690.tab", "compression": "gz" } ], [ [ "GDS1691.tab" ], { "title": "Plakoglobin mutant heart response to endurance training", "description": "Analysis of arrhythmogenic right ventricle from plakoglobin heterozygous mutants subjected to endurance training. Mutations in plakoglobin, a component of the desmosome, result in arrhythmogenic right ventricular cardiomyopathy (ARVC). Results identify transcriptional response induced by training.", "type": "Expression profiling by array", "pubmed_id": "17030684", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4120", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1691", "description": "wild type", "sample_id": [ "GSM94214", "GSM94216", "GSM94218", "GSM94220", "GSM94211" ], "type": "genotype/variation", "id": "GDS1691_1" }, { "dataset_id": "GDS1691", "description": "plakoglobin heterozygous mutant", "sample_id": [ "GSM94213", "GSM94215", "GSM94217", "GSM94219", "GSM94212" ], "type": "genotype/variation", "id": "GDS1691_2" }, { "dataset_id": "GDS1691", "description": "untrained", "sample_id": [ "GSM94211", "GSM94212" ], "type": "other", "id": "GDS1691_3" }, { "dataset_id": "GDS1691", "description": "trained", "sample_id": [ "GSM94213", "GSM94214", "GSM94215", "GSM94216", "GSM94217", "GSM94218", "GSM94219", "GSM94220" ], "type": "other", "id": "GDS1691_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1691", "version": 1.0, "instances": "10", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1691.tab", "compression": "gz" } ], [ [ "GDS1692.tab" ], { "title": "Agrobacterium tumefaciens infection effect on cells: time course", "description": "Analysis of LER cells up to 48 hours after infection with oncogenic Agrobacterium tumefaciens (A.t.). Unlike all known bacterial phytopathogens, broadly-infectious A.t. lacks the hypersensitive response-inducing HRP genes. Results identify the host transcriptional response to this unusual pathogen.", "type": "Expression profiling by array", "pubmed_id": "16776300", "platform": "GPL1911", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted oligonucleotide", "feature_count": "26474", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "32", "value_type": "log2 ratio", "reference_series": "GSE4116", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1692", "description": "mock", "sample_id": [ "GSM94186", "GSM94187", "GSM94188", "GSM94189", "GSM94190", "GSM94191", "GSM94192", "GSM94193", "GSM94194", "GSM94195", "GSM94196", "GSM94197", "GSM94198", "GSM94199", "GSM94200", "GSM94201" ], "type": "infection", "id": "GDS1692_1" }, { "dataset_id": "GDS1692", "description": "Agrobacterium tumefaciens", "sample_id": [ "GSM94076", "GSM94149", "GSM94150", "GSM94151", "GSM94152", "GSM94153", "GSM94154", "GSM94158", "GSM94159", "GSM94179", "GSM94180", "GSM94181", "GSM94182", "GSM94183", "GSM94184", "GSM94185" ], "type": "infection", "id": "GDS1692_2" }, { "dataset_id": "GDS1692", "description": "4 h", "sample_id": [ "GSM94076", "GSM94149", "GSM94150", "GSM94151", "GSM94186", "GSM94187", "GSM94188", "GSM94201" ], "type": "time", "id": "GDS1692_3" }, { "dataset_id": "GDS1692", "description": "12 h", "sample_id": [ "GSM94152", "GSM94153", "GSM94154", "GSM94158", "GSM94189", "GSM94190", "GSM94191", "GSM94192" ], "type": "time", "id": "GDS1692_4" }, { "dataset_id": "GDS1692", "description": "24 h", "sample_id": [ "GSM94159", "GSM94179", "GSM94180", "GSM94181", "GSM94193", "GSM94194", "GSM94195", "GSM94196" ], "type": "time", "id": "GDS1692_5" }, { "dataset_id": "GDS1692", "description": "48 h", "sample_id": [ "GSM94182", "GSM94183", "GSM94184", "GSM94185", "GSM94197", "GSM94198", "GSM94199", "GSM94200" ], "type": "time", "id": "GDS1692_6" } ], "taxid": "3702", "genes": 22692, "aggregation_function": "mean", "name": "GDS1692", "version": 1.0, "instances": "32", "variables": 22695, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1692.tab", "compression": "gz" } ], [ [ "GDS1693.tab" ], { "title": "Transcription factor Nrl deficiency effect on photoreceptor development", "description": "Analysis of photoreceptors (PRs) from wild type and Nrl deficient retinas at various developmental stages. PRs isolated based on transgene GFP expression from an Nrl promoter. Nrl ablation leads to cones at the expense of rods. Results provide insight into the regulation of PR development.", "type": "Expression profiling by array", "pubmed_id": "16505381", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE4051", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1693", "description": "wild type", "sample_id": [ "GSM92629", "GSM92630", "GSM92631", "GSM92632", "GSM92633", "GSM92634", "GSM92635", "GSM92636", "GSM92637", "GSM92638", "GSM92639", "GSM92640", "GSM92641", "GSM92642", "GSM92643", "GSM92644", "GSM92645", "GSM92646", "GSM92647", "GSM92648" ], "type": "genotype/variation", "id": "GDS1693_1" }, { "dataset_id": "GDS1693", "description": "Nrl deficient", "sample_id": [ "GSM92610", "GSM92611", "GSM92612", "GSM92613", "GSM92614", "GSM92615", "GSM92616", "GSM92617", "GSM92618", "GSM92619", "GSM92620", "GSM92621", "GSM92622", "GSM92623", "GSM92624", "GSM92625", "GSM92626", "GSM92627", "GSM92628" ], "type": "genotype/variation", "id": "GDS1693_2" }, { "dataset_id": "GDS1693", "description": "E16", "sample_id": [ "GSM92614", "GSM92615", "GSM92616", "GSM92633", "GSM92634", "GSM92635", "GSM92636" ], "type": "development stage", "id": "GDS1693_3" }, { "dataset_id": "GDS1693", "description": "P2", "sample_id": [ "GSM92621", "GSM92622", "GSM92623", "GSM92624", "GSM92641", "GSM92642", "GSM92643", "GSM92644" ], "type": "development stage", "id": "GDS1693_4" }, { "dataset_id": "GDS1693", "description": "P6", "sample_id": [ "GSM92625", "GSM92626", "GSM92627", "GSM92628", "GSM92645", "GSM92646", "GSM92647", "GSM92648" ], "type": "development stage", "id": "GDS1693_5" }, { "dataset_id": "GDS1693", "description": "P10", "sample_id": [ "GSM92617", "GSM92618", "GSM92619", "GSM92620", "GSM92637", "GSM92638", "GSM92639", "GSM92640" ], "type": "development stage", "id": "GDS1693_6" }, { "dataset_id": "GDS1693", "description": "4 weeks", "sample_id": [ "GSM92610", "GSM92611", "GSM92612", "GSM92613", "GSM92629", "GSM92630", "GSM92631", "GSM92632" ], "type": "development stage", "id": "GDS1693_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1693", "version": 1.0, "instances": "39", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1693.tab", "compression": "gz" } ], [ [ "GDS1694.tab" ], { "title": "Altered mitochondrial alternative oxidase expression effect on leaves", "description": "Analysis of five-week-old leaves under non-stress conditions from wild type gl1 and two transgenic lines that overexpress (S5) or inhibit (A1-1) mitochondrial alternative oxidase (AOX) synthesis. Results provide insight into the role of AOX in regulating reactive oxygen species (ROS) in leaves.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4113", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1694", "description": "wild type", "sample_id": [ "GSM94006", "GSM94010", "GSM94012" ], "type": "strain", "id": "GDS1694_1" }, { "dataset_id": "GDS1694", "description": "low AOX", "sample_id": [ "GSM94007", "GSM94008", "GSM94009" ], "type": "strain", "id": "GDS1694_2" }, { "dataset_id": "GDS1694", "description": "high AOX", "sample_id": [ "GSM94011", "GSM94013", "GSM94014" ], "type": "strain", "id": "GDS1694_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1694", "version": 1.0, "instances": "9", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1694.tab", "compression": "gz" } ], [ [ "GDS1695.tab" ], { "title": "Self-renewing memory B cell", "description": "Analysis of plasma, germinal center, and memory B cells (mBCs) from animals immunized with the T-dependent antigen, NP-CGG. MBC, memory T (mTCs), and long-term hematopoietic stem cells (Lt-HSCs) undergo self-renewal. Results indicate mBCs share a transcriptional program with mTCs and Lt-HSCs.", "type": "Expression profiling by array", "pubmed_id": "16492737", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE4142", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1695", "description": "naive B cells", "sample_id": [ "GSM94741", "GSM94744", "GSM94745" ], "type": "cell type", "id": "GDS1695_1" }, { "dataset_id": "GDS1695", "description": "plasma B cells", "sample_id": [ "GSM94747", "GSM94762", "GSM94763", "GSM94764" ], "type": "cell type", "id": "GDS1695_2" }, { "dataset_id": "GDS1695", "description": "germinal center B cells", "sample_id": [ "GSM94765", "GSM94766", "GSM94767" ], "type": "cell type", "id": "GDS1695_3" }, { "dataset_id": "GDS1695", "description": "memory B cells", "sample_id": [ "GSM94768", "GSM94769", "GSM94771", "GSM94772" ], "type": "cell type", "id": "GDS1695_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1695", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1695.tab", "compression": "gz" } ], [ [ "GDS1696.tab" ], { "title": "Nanosecond pulsed electric fields effect: time course", "description": "Expression profiling of Jurkat cells 30min and 60min after exposure to nanosecond pulsed electric fields (nsPEFs) for two consecutive 10 ns pulses at 280kV/cm. Results provide insight into the early response genes to DNA damage caused by electric field radiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4106", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1696", "description": "control", "sample_id": [ "GSM93908", "GSM93909", "GSM93910", "GSM93914", "GSM93915", "GSM93916" ], "type": "protocol", "id": "GDS1696_1" }, { "dataset_id": "GDS1696", "description": "nanosecond pulsed electric fields", "sample_id": [ "GSM93911", "GSM93912", "GSM93913", "GSM93917", "GSM93918", "GSM93919" ], "type": "protocol", "id": "GDS1696_2" }, { "dataset_id": "GDS1696", "description": "0.5 h", "sample_id": [ "GSM93908", "GSM93909", "GSM93910", "GSM93911", "GSM93912", "GSM93913" ], "type": "time", "id": "GDS1696_3" }, { "dataset_id": "GDS1696", "description": "1 h", "sample_id": [ "GSM93914", "GSM93915", "GSM93916", "GSM93917", "GSM93918", "GSM93919" ], "type": "time", "id": "GDS1696_4" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS1696", "version": 1.0, "instances": "12", "variables": 45749, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1696.tab", "compression": "gz" } ], [ [ "GDS1697.tab" ], { "title": "DNA methyltransferase inhibitor 5-aza-2'-deoxycytidine effect on prostate cancer cell lines", "description": "Analysis of prostate cancer cell lines after treatment with the DNA methyltransferase inhibitor 5-Aza-2'-deoxycytidine (5-aza-dC). Aberrant DNA methylation is an early event in the development of prostate cancer. Results identify hypermethylated genes whose expression is induced by 5-aza-dC.", "type": "Expression profiling by array", "pubmed_id": "16166285", "platform": "GPL3295", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4089", "order": "none", "update_date": "May 09 2006", "subsets": [ { "dataset_id": "GDS1697", "description": "LNCaP", "sample_id": [ "GSM93629" ], "type": "cell line", "id": "GDS1697_1" }, { "dataset_id": "GDS1697", "description": "DU145", "sample_id": [ "GSM93630" ], "type": "cell line", "id": "GDS1697_2" }, { "dataset_id": "GDS1697", "description": "PC3", "sample_id": [ "GSM93631" ], "type": "cell line", "id": "GDS1697_3" }, { "dataset_id": "GDS1697", "description": "MDA-2A", "sample_id": [ "GSM93632" ], "type": "cell line", "id": "GDS1697_4" } ], "taxid": "9606", "genes": 35981, "aggregation_function": "mean", "name": "GDS1697", "version": 1.0, "instances": "4", "variables": 35983, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1697.tab", "compression": "gz" } ], [ [ "GDS1699.tab" ], { "title": "Androgen sensitive and insensitive prostate cancer cell lines: expression profiles", "description": "Analysis of androgen sensitive (AS) and insensitive (AI) prostate cancer cell lines. Despite the wide use of these cell lines as model systems, a global genotypic characterization of these cell lines is currently lacking. Results identify differences in gene expression profiles.", "type": "Expression profiling by array", "pubmed_id": "15486987", "platform": "GPL3341", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43104", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE4016", "order": "none", "update_date": "May 10 2006", "subsets": [ { "dataset_id": "GDS1699", "description": "androgen sensitive", "sample_id": [ "GSM91918", "GSM91919", "GSM91921", "GSM91922", "GSM91923" ], "type": "cell type", "id": "GDS1699_1" }, { "dataset_id": "GDS1699", "description": "androgen insensitive", "sample_id": [ "GSM91916", "GSM91917", "GSM91920" ], "type": "cell type", "id": "GDS1699_2" }, { "dataset_id": "GDS1699", "description": "PPC-1", "sample_id": [ "GSM91916" ], "type": "cell line", "id": "GDS1699_3" }, { "dataset_id": "GDS1699", "description": "PC-3", "sample_id": [ "GSM91917" ], "type": "cell line", "id": "GDS1699_4" }, { "dataset_id": "GDS1699", "description": "LAPC-4", "sample_id": [ "GSM91918" ], "type": "cell line", "id": "GDS1699_5" }, { "dataset_id": "GDS1699", "description": "MDA PCa 2b", "sample_id": [ "GSM91919" ], "type": "cell line", "id": "GDS1699_6" }, { "dataset_id": "GDS1699", "description": "DU 145", "sample_id": [ "GSM91920" ], "type": "cell line", "id": "GDS1699_7" }, { "dataset_id": "GDS1699", "description": "LNCaP", "sample_id": [ "GSM91921" ], "type": "cell line", "id": "GDS1699_8" }, { "dataset_id": "GDS1699", "description": "22Rv1", "sample_id": [ "GSM91922" ], "type": "cell line", "id": "GDS1699_9" }, { "dataset_id": "GDS1699", "description": "MDA PCa 2a", "sample_id": [ "GSM91923" ], "type": "cell line", "id": "GDS1699_10" } ], "taxid": "9606", "genes": 33690, "aggregation_function": "mean", "name": "GDS1699", "version": 1.0, "instances": "8", "variables": 33693, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1699.tab", "compression": "gz" } ], [ [ "GDS17.tab" ], { "title": "Hydrogen peroxide response", "description": "Samples collected 20 minutes after exposure to 0.3 mM hydrogen peroxide. Wild type and mutant strains examined. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL51", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE18", "order": "none", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS17", "description": "DBY7286 wild type", "sample_id": [ "GSM1002" ], "type": "strain", "id": "GDS17_1" }, { "dataset_id": "GDS17", "description": "DBYyap1- mutant", "sample_id": [ "GSM1003" ], "type": "strain", "id": "GDS17_2" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS17", "version": 1.0, "instances": "2", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS17.tab", "compression": "gz" } ], [ [ "GDS170.tab" ], { "title": "Tumor suppressor protein p53 gene dosage effects", "description": "Analysis of tumor suppressor protein p53 gene dosage effects in HCT116 colorectal carcinoma-derived cell lines p53 -/-, +/- and +/+ at 0 and 12 hours. Cells with different numbers of functional TP53 alleles can be distinguished by gene expression profile.", "type": "Expression profiling by array", "pubmed_id": "12438652", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE90", "order": "none", "update_date": "Apr 17 2003", "subsets": [ { "dataset_id": "GDS170", "description": "p53 -/-", "sample_id": [ "GSM2546", "GSM2547", "GSM2548", "GSM2549" ], "type": "strain", "id": "GDS170_1" }, { "dataset_id": "GDS170", "description": "p53 -/+", "sample_id": [ "GSM2550", "GSM2551", "GSM2552", "GSM2553" ], "type": "strain", "id": "GDS170_2" }, { "dataset_id": "GDS170", "description": "p53 +/+", "sample_id": [ "GSM2554", "GSM2555", "GSM2556", "GSM2557" ], "type": "strain", "id": "GDS170_3" }, { "dataset_id": "GDS170", "description": "0 hour", "sample_id": [ "GSM2546", "GSM2547", "GSM2550", "GSM2551", "GSM2554", "GSM2555" ], "type": "time", "id": "GDS170_4" }, { "dataset_id": "GDS170", "description": "12 hour", "sample_id": [ "GSM2548", "GSM2549", "GSM2552", "GSM2553", "GSM2556", "GSM2557" ], "type": "time", "id": "GDS170_5" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS170", "version": 1.0, "instances": "12", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS170.tab", "compression": "gz" } ], [ [ "GDS1700.tab" ], { "title": "Anemia induced by acute renal rejection: peripheral blood lymphocytes", "description": "Analysis of peripheral blood lymphocytes from 4 renal allograft recipients with acute rejection and concurrent anemia. Compromised renal function after renal allograft transplantation often results in anemia. Results provide insight into the molecular events underlying anemia in acute rejection.", "type": "Expression profiling by array", "pubmed_id": "12492705", "platform": "GPL3306", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE3976", "order": "none", "update_date": "May 09 2006", "subsets": [ { "dataset_id": "GDS1700", "description": "patient 67", "sample_id": [ "GSM90656" ], "type": "individual", "id": "GDS1700_1" }, { "dataset_id": "GDS1700", "description": "patient 30", "sample_id": [ "GSM90657" ], "type": "individual", "id": "GDS1700_2" }, { "dataset_id": "GDS1700", "description": "patient 71", "sample_id": [ "GSM90658" ], "type": "individual", "id": "GDS1700_3" }, { "dataset_id": "GDS1700", "description": "patient 6", "sample_id": [ "GSM90659" ], "type": "individual", "id": "GDS1700_4" } ], "taxid": "9606", "genes": 7408, "aggregation_function": "mean", "name": "GDS1700", "version": 1.0, "instances": "4", "variables": 7410, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1700.tab", "compression": "gz" } ], [ [ "GDS1701.tab" ], { "title": "Endothelial progenitor cells in fetal liver", "description": "Analysis of endothelial progenitor cells (EPCs) from fetal liver (LEPs). EPCs have a high angiogenic capacity at sites of tissue injury and, thus, significant therapeutic potential. Results show that LEPs within the CD31+Sca1+ stem cell subset possess the endothelial progenitor activity.", "type": "Expression profiling by array", "pubmed_id": "16099996", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1727", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1701", "description": "LEPs", "sample_id": [ "GSM30082" ], "type": "cell type", "id": "GDS1701_1" }, { "dataset_id": "GDS1701", "description": "LEPs_Sca1 plus", "sample_id": [ "GSM30084", "GSM101117" ], "type": "cell type", "id": "GDS1701_2" }, { "dataset_id": "GDS1701", "description": "LEPs_Sca1 minus", "sample_id": [ "GSM30085", "GSM101118", "GSM101119" ], "type": "cell type", "id": "GDS1701_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1701", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1701.tab", "compression": "gz" } ], [ [ "GDS1702.tab" ], { "title": "Dark-grown phytochrome phyA phyB double mutants", "description": "Analysis of dark-grown Col phytochrome mutants given 1 hour of white light to induce germination, followed by 3 days in darkness. Phytochromes mediate a profound developmental shift upon light exposure. Results reveal signaling network paths between photoreceptors and target developmental genes.", "type": "Expression profiling by array", "pubmed_id": "16024587", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3002", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1702", "description": "wild type", "sample_id": [ "GSM65294", "GSM65295" ], "type": "genotype/variation", "id": "GDS1702_1" }, { "dataset_id": "GDS1702", "description": "phyA phyB double mutant", "sample_id": [ "GSM65296", "GSM65297" ], "type": "genotype/variation", "id": "GDS1702_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1702", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1702.tab", "compression": "gz" } ], [ [ "GDS1703.tab" ], { "title": "Dark-grown phytochrome and cryptochrome mutants", "description": "Analysis of dark grown Ler seedlings mutant for phytochromes A and B, or cryptochromes cry1 and cry2, or both. Results provide insight into the structure of the signaling network between the photoreceptor families and the target developmental genes that respond to light.", "type": "Expression profiling by array", "pubmed_id": "16024587", "platform": "GPL2598", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8775", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2919", "order": "none", "update_date": "May 01 2006", "subsets": [ { "dataset_id": "GDS1703", "description": "wild type", "sample_id": [ "GSM63478" ], "type": "genotype/variation", "id": "GDS1703_1" }, { "dataset_id": "GDS1703", "description": "phyA phyB", "sample_id": [ "GSM63526" ], "type": "genotype/variation", "id": "GDS1703_2" }, { "dataset_id": "GDS1703", "description": "cry1 cry2", "sample_id": [ "GSM63695" ], "type": "genotype/variation", "id": "GDS1703_3" }, { "dataset_id": "GDS1703", "description": "phyA phyB cry1 cry2", "sample_id": [ "GSM63696" ], "type": "genotype/variation", "id": "GDS1703_4" } ], "taxid": "3702", "genes": 7693, "aggregation_function": "mean", "name": "GDS1703", "version": 1.0, "instances": "4", "variables": 7695, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1703.tab", "compression": "gz" } ], [ [ "GDS1704.tab" ], { "title": "Dark-grown phytochrome phyA phyB single and double mutants", "description": "Analysis of dark-grown Col phytochrome mutants given 1 hour of white light to induce germination, followed by 3 days in darkness. Phytochromes mediate a profound developmental shift upon light exposure. Results reveal signaling network paths between photoreceptors and target developmental genes.", "type": "Expression profiling by array", "pubmed_id": "16024587", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3038", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1704", "description": "wild type", "sample_id": [ "GSM65896", "GSM65897" ], "type": "genotype/variation", "id": "GDS1704_1" }, { "dataset_id": "GDS1704", "description": "phyA", "sample_id": [ "GSM65898", "GSM65902" ], "type": "genotype/variation", "id": "GDS1704_2" }, { "dataset_id": "GDS1704", "description": "phyB", "sample_id": [ "GSM65904", "GSM65910" ], "type": "genotype/variation", "id": "GDS1704_3" }, { "dataset_id": "GDS1704", "description": "phyA phyB", "sample_id": [ "GSM66029", "GSM66030" ], "type": "genotype/variation", "id": "GDS1704_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1704", "version": 1.0, "instances": "8", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1704.tab", "compression": "gz" } ], [ [ "GDS1705.tab" ], { "title": "MyD88-deficient macrophage response to lipopolysaccharide and E. coli", "description": "Analysis of MyD88 null mutant macrophages treated with LPS or live E. coli. MyD88 transduces cell signaling events downstream of Toll-like receptors, a key component of host defense. Results suggest most of the host response to endotoxin or live bacteria is actually regulated independently of MyD88.", "type": "Expression profiling by array", "pubmed_id": "15367722", "platform": "GPL1226", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13872", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log2 ratio", "reference_series": "GSE1405", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1705", "description": "wild type", "sample_id": [ "GSM22618", "GSM22620", "GSM22622", "GSM22625", "GSM22634", "GSM22636", "GSM22638", "GSM22640" ], "type": "genotype/variation", "id": "GDS1705_1" }, { "dataset_id": "GDS1705", "description": "MyD88-/-", "sample_id": [ "GSM22627", "GSM22629", "GSM22631", "GSM22632", "GSM22642", "GSM22644", "GSM22646", "GSM22648" ], "type": "genotype/variation", "id": "GDS1705_2" }, { "dataset_id": "GDS1705", "description": "lipopolysaccharide", "sample_id": [ "GSM22618", "GSM22620", "GSM22622", "GSM22625", "GSM22627", "GSM22629", "GSM22631", "GSM22632" ], "type": "agent", "id": "GDS1705_3" }, { "dataset_id": "GDS1705", "description": "E. coli", "sample_id": [ "GSM22634", "GSM22636", "GSM22638", "GSM22640", "GSM22642", "GSM22644", "GSM22646", "GSM22648" ], "type": "agent", "id": "GDS1705_4" } ], "taxid": "10090", "genes": 12483, "aggregation_function": "mean", "name": "GDS1705", "version": 1.0, "instances": "16", "variables": 12486, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1705.tab", "compression": "gz" } ], [ [ "GDS1706.tab" ], { "title": "MyD88-deficient macrophage response to lipopolysaccharide and E. coli (dye swap)", "description": "Analysis of MyD88 null mutant macrophages treated with LPS or live E. coli. MyD88 transduces cell signaling events downstream of Toll-like receptors, a key component of host defense. Results suggest most of the host response to endotoxin or live bacteria is actually regulated independently of MyD88.", "type": "Expression profiling by array", "pubmed_id": "15367722", "platform": "GPL1226", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13872", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log2 ratio", "reference_series": "GSE1405", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1706", "description": "wild type", "sample_id": [ "GSM22617", "GSM22619", "GSM22621", "GSM22623", "GSM22633", "GSM22635", "GSM22637", "GSM22639" ], "type": "genotype/variation", "id": "GDS1706_1" }, { "dataset_id": "GDS1706", "description": "MyD88-/-", "sample_id": [ "GSM22626", "GSM22628", "GSM22630", "GSM22641", "GSM22643", "GSM22645", "GSM22647" ], "type": "genotype/variation", "id": "GDS1706_2" }, { "dataset_id": "GDS1706", "description": "lipopolysaccharide", "sample_id": [ "GSM22617", "GSM22619", "GSM22621", "GSM22623", "GSM22626", "GSM22628", "GSM22630" ], "type": "agent", "id": "GDS1706_3" }, { "dataset_id": "GDS1706", "description": "E. coli", "sample_id": [ "GSM22633", "GSM22635", "GSM22637", "GSM22639", "GSM22641", "GSM22643", "GSM22645", "GSM22647" ], "type": "agent", "id": "GDS1706_4" } ], "taxid": "10090", "genes": 12483, "aggregation_function": "mean", "name": "GDS1706", "version": 1.0, "instances": "15", "variables": 12486, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1706.tab", "compression": "gz" } ], [ [ "GDS1707.tab" ], { "title": "Aldosterone effect on kidney cortical collecting cell line: time course", "description": "Analysis of kidney epithelial cortical collecting duct cells treated with aldosterone for 1 or 6 hours. Aldosterone stimulates Na+ transport in tight epithelia. Results identify candidate genes that regulate Na+ transport via the epithelial Na+ channel and mediate the early response to aldosterone.", "type": "Expression profiling by array", "pubmed_id": "16216878", "platform": "GPL2623", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "16463", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE2933", "order": "ordered", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1707", "description": "1 h", "sample_id": [ "GSM64041", "GSM64042", "GSM64043", "GSM64044" ], "type": "time", "id": "GDS1707_1" }, { "dataset_id": "GDS1707", "description": "6 h", "sample_id": [ "GSM64045", "GSM64046", "GSM64047", "GSM64048" ], "type": "time", "id": "GDS1707_2" } ], "taxid": "10090", "genes": 15394, "aggregation_function": "mean", "name": "GDS1707", "version": 1.0, "instances": "8", "variables": 15396, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1707.tab", "compression": "gz" } ], [ [ "GDS171.tab" ], { "title": "HIV viral infection time course", "description": "Gene expression profile of proliferating normal peripheral blood mononuclear cells (PBMC) infected with HIV type 1 RF. Assessed at 0, 12, 24, 48, and 72 hours postinfection and compared with those of matched uninfected PBMC.", "type": "Expression profiling by array", "pubmed_id": "11839152", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE511", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS171", "description": "uninfected", "sample_id": [ "GSM2591", "GSM2597", "GSM2601", "GSM2603", "GSM2605", "GSM2607", "GSM2609", "GSM2611", "GSM2613", "GSM2615", "GSM2617", "GSM2619", "GSM2621", "GSM2623", "GSM2625" ], "type": "infection", "id": "GDS171_1" }, { "dataset_id": "GDS171", "description": "infected", "sample_id": [ "GSM2595", "GSM2599", "GSM2602", "GSM2604", "GSM2606", "GSM2608", "GSM2610", "GSM2612", "GSM2614", "GSM2616", "GSM2618", "GSM2620", "GSM2622", "GSM2624", "GSM2626" ], "type": "infection", "id": "GDS171_2" }, { "dataset_id": "GDS171", "description": "0 hour", "sample_id": [ "GSM2595", "GSM2608", "GSM2618", "GSM2591", "GSM2607", "GSM2617" ], "type": "time", "id": "GDS171_3" }, { "dataset_id": "GDS171", "description": "12 hour", "sample_id": [ "GSM2599", "GSM2610", "GSM2620", "GSM2597", "GSM2609", "GSM2619" ], "type": "time", "id": "GDS171_4" }, { "dataset_id": "GDS171", "description": "24 hour", "sample_id": [ "GSM2602", "GSM2612", "GSM2622", "GSM2601", "GSM2611", "GSM2621" ], "type": "time", "id": "GDS171_5" }, { "dataset_id": "GDS171", "description": "48 hour", "sample_id": [ "GSM2604", "GSM2614", "GSM2624", "GSM2603", "GSM2613", "GSM2623" ], "type": "time", "id": "GDS171_6" }, { "dataset_id": "GDS171", "description": "72 hour", "sample_id": [ "GSM2606", "GSM2616", "GSM2626", "GSM2605", "GSM2615", "GSM2625" ], "type": "time", "id": "GDS171_7" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS171", "version": 1.0, "instances": "30", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS171.tab", "compression": "gz" } ], [ [ "GDS1710.tab" ], { "title": "bHLH transcription factor MyoD knockdown effect on myoblast differentiation", "description": "Analysis of C2C12 myoblast cell line following RNAi knockdown of the bHLH transcription factor MyoD. RNA prepared from cells after 1, 3, and 6 days of myogenic differentiation in DMEM medium supplemented with 2% horse serum. Results identify targets of MyoD.", "type": "Expression profiling by array", "pubmed_id": "15890200", "platform": "GPL2677", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5376", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE3014", "order": "ordered", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1710", "description": "1 d", "sample_id": [ "GSM66023", "GSM66024" ], "type": "time", "id": "GDS1710_1" }, { "dataset_id": "GDS1710", "description": "3 d", "sample_id": [ "GSM66025", "GSM66026" ], "type": "time", "id": "GDS1710_2" }, { "dataset_id": "GDS1710", "description": "6 d", "sample_id": [ "GSM66027", "GSM66028" ], "type": "time", "id": "GDS1710_3" } ], "taxid": "10090", "genes": 2307, "aggregation_function": "mean", "name": "GDS1710", "version": 1.0, "instances": "6", "variables": 2309, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1710.tab", "compression": "gz" } ], [ [ "GDS1711.tab" ], { "title": "Heat shock stress response: time course", "description": "Expression profiling of wild type JN54 cells following heat shock treatment at 43 degrees C for 30 and 60 minutes. Results compared to expression profile of ssa1 ssa2 double deletion mutant. Ssa1p and Ssa2p are cytosolic molecular chaperones.", "type": "Expression profiling by array", "pubmed_id": "16209719", "platform": "GPL1945", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6912", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE3316", "order": "none", "update_date": "Apr 23 2010", "subsets": [ { "dataset_id": "GDS1711", "description": "30 min", "sample_id": [ "GSM74508", "GSM74509", "GSM74510", "GSM74511", "GSM74512", "GSM74513" ], "type": "time", "id": "GDS1711_1" }, { "dataset_id": "GDS1711", "description": "60 min", "sample_id": [ "GSM74515", "GSM74516", "GSM74517", "GSM74518", "GSM74519", "GSM74520" ], "type": "time", "id": "GDS1711_2" }, { "dataset_id": "GDS1711", "description": "low power scan", "sample_id": [ "GSM74509", "GSM74511", "GSM74513", "GSM74516", "GSM74518", "GSM74520" ], "type": "protocol", "id": "GDS1711_3" }, { "dataset_id": "GDS1711", "description": "high power scan", "sample_id": [ "GSM74508", "GSM74510", "GSM74512", "GSM74515", "GSM74517", "GSM74519" ], "type": "protocol", "id": "GDS1711_4" } ], "taxid": "4932", "genes": 5926, "aggregation_function": "mean", "name": "GDS1711", "version": 1.0, "instances": "12", "variables": 5929, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1711.tab", "compression": "gz" } ], [ [ "GDS1712.tab" ], { "title": "2,4-dibencilaminoquinazoline effect on various cancer cell lines", "description": "Analysis of breast HTB26, colon HT29, and bladder T24 cancer cell lines after treatment with 2,4-dibencilaminoquinazoline, which exhibits cytostatic and apoptotic effects. Gene expression examined after 2,4-dibencilaminoquinazoline induces caspase activation or DNA fragmentation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2006", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE3329", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS1712", "description": "HTB26", "sample_id": [ "GSM74910", "GSM74911" ], "type": "cell line", "id": "GDS1712_1" }, { "dataset_id": "GDS1712", "description": "HT29", "sample_id": [ "GSM74940", "GSM74967" ], "type": "cell line", "id": "GDS1712_2" }, { "dataset_id": "GDS1712", "description": "T24", "sample_id": [ "GSM74954", "GSM74983" ], "type": "cell line", "id": "GDS1712_3" }, { "dataset_id": "GDS1712", "description": "breast cancer", "sample_id": [ "GSM74910", "GSM74911" ], "type": "disease state", "id": "GDS1712_4" }, { "dataset_id": "GDS1712", "description": "colon cancer", "sample_id": [ "GSM74940", "GSM74967" ], "type": "disease state", "id": "GDS1712_5" }, { "dataset_id": "GDS1712", "description": "bladder cancer", "sample_id": [ "GSM74954", "GSM74983" ], "type": "disease state", "id": "GDS1712_6" }, { "dataset_id": "GDS1712", "description": "caspase inactivated", "sample_id": [ "GSM74911", "GSM74940", "GSM74983" ], "type": "stress", "id": "GDS1712_7" }, { "dataset_id": "GDS1712", "description": "DNA fragmented", "sample_id": [ "GSM74910", "GSM74954", "GSM74967" ], "type": "stress", "id": "GDS1712_8" } ], "taxid": "9606", "genes": 17457, "aggregation_function": "mean", "name": "GDS1712", "version": 1.0, "instances": "6", "variables": 17461, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1712.tab", "compression": "gz" } ], [ [ "GDS1713.tab" ], { "title": "Ewing family tumor and neuroblastoma comparison", "description": "Analysis of Ewing family tumor (EFT) and neuroblastoma (NB) samples. Distinguishing EFTs from other small round blue cell tumors (SRBCTs), such as NBs, by histologic methods is often difficult. Results identify EF-associated genes that enable molecular discrimination between EFTs and other SRBCTs.", "type": "Expression profiling by array", "pubmed_id": [ "15548687", "19502792" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1825", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1713", "description": "Ewing family tumor", "sample_id": [ "GSM31871", "GSM31872", "GSM31873", "GSM31874", "GSM31875" ], "type": "disease state", "id": "GDS1713_1" }, { "dataset_id": "GDS1713", "description": "neuroblastoma", "sample_id": [ "GSM31876", "GSM31877", "GSM31878", "GSM31879", "GSM31880" ], "type": "disease state", "id": "GDS1713_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1713", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1713.tab", "compression": "gz" } ], [ [ "GDS1714.tab" ], { "title": "Bleomycin effect on mutagen-sensitive lymphoblastoid cell lines", "description": "Analysis of mutagen-sensitive lymphoblastoid cell lines after exposure to bleomycin. Mutagen-sensitive cells exhibit a high number of bleomycin-induced chromatid breaks. Mutagen sensitivity (MS) reflects an individual's susceptibility to sporadic cancers. Results identify genes involved in MS.", "type": "Expression profiling by array", "pubmed_id": "16513838", "platform": "GPL2902", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log2 ratio", "reference_series": "GSE3598", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1714", "description": "bleomycin-insensitive", "sample_id": [ "GSM81940", "GSM81941", "GSM81942", "GSM81943", "GSM81948", "GSM81949", "GSM81950", "GSM81951", "GSM81954", "GSM81955", "GSM81956", "GSM81957", "GSM81958", "GSM81959" ], "type": "cell line", "id": "GDS1714_1" }, { "dataset_id": "GDS1714", "description": "bleomycin-sensitive", "sample_id": [ "GSM81933", "GSM81934", "GSM81935", "GSM81936", "GSM81937", "GSM81938", "GSM81939", "GSM81944", "GSM81945", "GSM81946", "GSM81947", "GSM81952", "GSM81953", "GSM81960" ], "type": "cell line", "id": "GDS1714_2" }, { "dataset_id": "GDS1714", "description": "untreated", "sample_id": [ "GSM81933", "GSM81935", "GSM81938", "GSM81940", "GSM81942", "GSM81944", "GSM81946", "GSM81948", "GSM81950", "GSM81952", "GSM81954", "GSM81956", "GSM81958", "GSM81960" ], "type": "agent", "id": "GDS1714_3" }, { "dataset_id": "GDS1714", "description": "bleomycin", "sample_id": [ "GSM81934", "GSM81936", "GSM81937", "GSM81939", "GSM81941", "GSM81943", "GSM81945", "GSM81947", "GSM81949", "GSM81951", "GSM81953", "GSM81955", "GSM81957", "GSM81959" ], "type": "agent", "id": "GDS1714_4" } ], "taxid": "9606", "genes": 17119, "aggregation_function": "mean", "name": "GDS1714", "version": 1.0, "instances": "28", "variables": 17122, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1714.tab", "compression": "gz" } ], [ [ "GDS1715.tab" ], { "title": "Transcription factors Mixer and Sox17beta expression effect on na\u00efve ectodermal tissue", "description": "Analysis of na\u00efve ectodermal tissue excised from embryos injected with Mixer or Sox17beta mRNA. Mixer and Sox17beta are important in endoderm specification during embryogenesis. Results provide insight into the molecular mechanisms underlying the regulation of endoderm development.", "type": "Expression profiling by array", "pubmed_id": "16278889", "platform": "GPL1318", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15611", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE3334", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1715", "description": "control", "sample_id": [ "GSM75297", "GSM75414" ], "type": "genotype/variation", "id": "GDS1715_1" }, { "dataset_id": "GDS1715", "description": "Mixer expression", "sample_id": [ "GSM75415", "GSM75416" ], "type": "genotype/variation", "id": "GDS1715_2" }, { "dataset_id": "GDS1715", "description": "Sox17 expression", "sample_id": [ "GSM75417", "GSM75418" ], "type": "genotype/variation", "id": "GDS1715_3" } ], "taxid": "8355", "genes": 13132, "aggregation_function": "mean", "name": "GDS1715", "version": 1.0, "instances": "6", "variables": 13134, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1715.tab", "compression": "gz" } ], [ [ "GDS1716.tab" ], { "title": "SOD1-G93A transgenic model of amyotrophic lateral sclerosis: oculomotor nucleus", "description": "Analysis of oculomotor motor neurons (OMNs) of SOD1-G93A transgenic model of amyotrophic lateral sclerosis (ALS) at 6 and 10 weeks of age. ALS spares the ocular neurons suggesting they are intrinsically protected against ALS. Results instead suggest OMNs actively adapt to the ALS-inducing mutation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3343", "order": "none", "update_date": "May 05 2006", "subsets": [ { "dataset_id": "GDS1716", "description": "6 wk", "sample_id": [ "GSM75464", "GSM75465", "GSM75466", "GSM75467", "GSM75468", "GSM75469" ], "type": "age", "id": "GDS1716_1" }, { "dataset_id": "GDS1716", "description": "10 wk", "sample_id": [ "GSM75472", "GSM75479", "GSM75484", "GSM75485", "GSM75486", "GSM75487", "GSM75488", "GSM75489", "GSM75490", "GSM75505", "GSM75506", "GSM75507" ], "type": "age", "id": "GDS1716_2" }, { "dataset_id": "GDS1716", "description": "spinal cord", "sample_id": [ "GSM75467", "GSM75468", "GSM75469", "GSM75485", "GSM75486", "GSM75487", "GSM75505", "GSM75506", "GSM75507" ], "type": "tissue", "id": "GDS1716_3" }, { "dataset_id": "GDS1716", "description": "ocular motor neuron", "sample_id": [ "GSM75464", "GSM75465", "GSM75466", "GSM75472", "GSM75479", "GSM75484", "GSM75488", "GSM75489", "GSM75490" ], "type": "tissue", "id": "GDS1716_4" }, { "dataset_id": "GDS1716", "description": "control", "sample_id": [ "GSM75472", "GSM75479", "GSM75484", "GSM75485", "GSM75486", "GSM75487" ], "type": "genotype/variation", "id": "GDS1716_5" }, { "dataset_id": "GDS1716", "description": "mutant", "sample_id": [ "GSM75464", "GSM75465", "GSM75466", "GSM75467", "GSM75468", "GSM75469", "GSM75488", "GSM75489", "GSM75490", "GSM75505", "GSM75506", "GSM75507" ], "type": "genotype/variation", "id": "GDS1716_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1716", "version": 1.0, "instances": "18", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1716.tab", "compression": "gz" } ], [ [ "GDS1723.tab" ], { "title": "Abscisic acid effect on small GTPase rop10-1 mutant seedlings", "description": "Analysis of small GTPase rop10-1 knockout mutant seedlings following treatment with 1 uM abscisic acid (ABA). ROP10 is involved in the negative regulation of ABA responses. Results provide insight into the mechanisms underlying the regulation of the ROP10-mediated ABA signaling network.", "type": "Expression profiling by array", "pubmed_id": "16258012", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3454", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1723", "description": "wild type", "sample_id": [ "GSM78332", "GSM78333", "GSM78334", "GSM78338", "GSM78339", "GSM78340" ], "type": "genotype/variation", "id": "GDS1723_1" }, { "dataset_id": "GDS1723", "description": "rop10-1 mutant", "sample_id": [ "GSM78335", "GSM78336", "GSM78337", "GSM78341", "GSM78342", "GSM78343" ], "type": "genotype/variation", "id": "GDS1723_2" }, { "dataset_id": "GDS1723", "description": "control", "sample_id": [ "GSM78332", "GSM78333", "GSM78334", "GSM78335", "GSM78336", "GSM78337" ], "type": "agent", "id": "GDS1723_3" }, { "dataset_id": "GDS1723", "description": "abscisic acid", "sample_id": [ "GSM78338", "GSM78339", "GSM78340", "GSM78341", "GSM78342", "GSM78343" ], "type": "agent", "id": "GDS1723_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1723", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1723.tab", "compression": "gz" } ], [ [ "GDS1724.tab" ], { "title": "Gonadal somatic cells during the critical period of sex determination: time course", "description": "Analysis of gonadal somatic cells from male and female embryos at 10.5 and 11.5 days post coitum (dpc), which span the critical period of male sex determination. Results provide insight into sex determination and gonad differentiation, and identify candidate genes for sexual dysgenesis syndromes.", "type": "Expression profiling by array", "pubmed_id": "16399799", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3463", "order": "none", "update_date": "May 26 2006", "subsets": [ { "dataset_id": "GDS1724", "description": "male", "sample_id": [ "GSM78482", "GSM78484", "GSM78485", "GSM78490", "GSM78491", "GSM78493" ], "type": "gender", "id": "GDS1724_1" }, { "dataset_id": "GDS1724", "description": "female", "sample_id": [ "GSM78479", "GSM78480", "GSM78481", "GSM78486", "GSM78487", "GSM78489" ], "type": "gender", "id": "GDS1724_2" }, { "dataset_id": "GDS1724", "description": "10.5 dpc", "sample_id": [ "GSM78479", "GSM78480", "GSM78481", "GSM78482", "GSM78484", "GSM78485" ], "type": "age", "id": "GDS1724_3" }, { "dataset_id": "GDS1724", "description": "11.5 dpc", "sample_id": [ "GSM78486", "GSM78487", "GSM78489", "GSM78490", "GSM78491", "GSM78493" ], "type": "age", "id": "GDS1724_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1724", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1724.tab", "compression": "gz" } ], [ [ "GDS1726.tab" ], { "title": "HIV encephalitis: brain frontal cortex", "description": "Analysis of brain frontal cortex of HIV-seropositive patients with HIV encephalitis (HIVE). HIVE affects >40% of AIDS patients, promoting neurodegeneration and cognitive impairment. Results suggest HIV-mediated dysregulation of genes involved in neuronal maintenance might play an important role.", "type": "Expression profiling by array", "pubmed_id": "15579294", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE3489", "order": "none", "update_date": "May 30 2006", "subsets": [ { "dataset_id": "GDS1726", "description": "control", "sample_id": [ "GSM79036", "GSM79043", "GSM79044", "GSM79045", "GSM79046", "GSM79047", "GSM79048", "GSM79049", "GSM80003", "GSM80004", "GSM80005", "GSM80006" ], "type": "disease state", "id": "GDS1726_1" }, { "dataset_id": "GDS1726", "description": "HIVE", "sample_id": [ "GSM79050", "GSM79051", "GSM79053", "GSM79055", "GSM79056", "GSM79059", "GSM79060", "GSM79062", "GSM80007", "GSM80008", "GSM80009", "GSM80010", "GSM80011", "GSM80012", "GSM80013", "GSM80014" ], "type": "disease state", "id": "GDS1726_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1726", "version": 1.0, "instances": "28", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1726.tab", "compression": "gz" } ], [ [ "GDS1727.tab" ], { "title": "UV-B radiation effect on UV resistance locus 8 and transcription factor HY5 mutant leaves", "description": "Analysis of leaves of UV resistance locus 8 uvr8-1 and transcription factor hy5-1 mutants following exposure to a physiological dose of UV-B. Results provide insight into the role of UVR8 and HY5 in the response to UV-B radiation and into the mechanisms of UV-B perception and signal transduction.", "type": "Expression profiling by array", "pubmed_id": "16330762", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE3533", "order": "none", "update_date": "May 30 2006", "subsets": [ { "dataset_id": "GDS1727", "description": "wild type", "sample_id": [ "GSM81005", "GSM81006", "GSM81007", "GSM81008", "GSM81009", "GSM81010" ], "type": "genotype/variation", "id": "GDS1727_1" }, { "dataset_id": "GDS1727", "description": "uvr8-1 mutant", "sample_id": [ "GSM81011", "GSM81012", "GSM81013", "GSM81014", "GSM81015", "GSM81016" ], "type": "genotype/variation", "id": "GDS1727_2" }, { "dataset_id": "GDS1727", "description": "hy5-1 mutant", "sample_id": [ "GSM81017", "GSM81018", "GSM81019" ], "type": "genotype/variation", "id": "GDS1727_3" }, { "dataset_id": "GDS1727", "description": "white light", "sample_id": [ "GSM81005", "GSM81006", "GSM81007", "GSM81011", "GSM81012", "GSM81013" ], "type": "stress", "id": "GDS1727_4" }, { "dataset_id": "GDS1727", "description": "UV-B light", "sample_id": [ "GSM81008", "GSM81009", "GSM81010", "GSM81014", "GSM81015", "GSM81016", "GSM81017", "GSM81018", "GSM81019" ], "type": "stress", "id": "GDS1727_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1727", "version": 1.0, "instances": "15", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1727.tab", "compression": "gz" } ], [ [ "GDS1728.tab" ], { "title": "DBA/2J model of glaucoma: retina", "description": "Analysis of retinas from strain DBA/2J with elevated intraocular pressure (IOP). A model for glaucoma, DBA/2J has mutations that lead to iris atrophy and pigment dispersion. These conditions result in increased IOP. Results provide insight into the molecular changes associated with IOP elevation.", "type": "Expression profiling by array", "pubmed_id": "16505032", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE3554", "order": "none", "update_date": "May 30 2006", "subsets": [ { "dataset_id": "GDS1728", "description": "3 m", "sample_id": [ "GSM81691", "GSM81692", "GSM81693" ], "type": "age", "id": "GDS1728_1" }, { "dataset_id": "GDS1728", "description": "8 m", "sample_id": [ "GSM81688", "GSM81689", "GSM81690" ], "type": "age", "id": "GDS1728_2" }, { "dataset_id": "GDS1728", "description": "normal", "sample_id": [ "GSM81691", "GSM81692", "GSM81693" ], "type": "disease state", "id": "GDS1728_3" }, { "dataset_id": "GDS1728", "description": "elevated IOP", "sample_id": [ "GSM81688", "GSM81689", "GSM81690" ], "type": "disease state", "id": "GDS1728_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1728", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1728.tab", "compression": "gz" } ], [ [ "GDS1729.tab" ], { "title": "MicroRNA miR-122 antisense inhibition effect on livers", "description": "Analysis of liver from C57BL/6 adult males treated with an antisense oligonucleotide (ASO) targeting liver-specific microRNA (miRNA) miR-122. miR-122 is expressed at high levels in the adult liver, making up 70% of all miRNA. Results provide insight into the role of miR-122 in the adult liver.", "type": "Expression profiling by array", "pubmed_id": "16459310", "platform": "GPL2897", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "45920", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3603", "order": "none", "update_date": "Jan 19 2007", "subsets": [ { "dataset_id": "GDS1729", "description": "control", "sample_id": [ "GSM83090", "GSM83100", "GSM83101", "GSM83102", "GSM83103" ], "type": "agent", "id": "GDS1729_1" }, { "dataset_id": "GDS1729", "description": "miR-122 antisense oligonucleotide", "sample_id": [ "GSM83104", "GSM83105", "GSM83106", "GSM83107", "GSM83108" ], "type": "agent", "id": "GDS1729_2" } ], "taxid": "10090", "genes": 30397, "aggregation_function": "mean", "name": "GDS1729", "version": 1.0, "instances": "10", "variables": 30399, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1729.tab", "compression": "gz" } ], [ [ "GDS1730.tab" ], { "title": "Autocrine platelet-derived growth factor inhibition effect on malignant gliomas", "description": "Analysis of U87 glioblastoma (GBM) cell clones overexpressing a dominant-negative form of platelet-derived growth factor (PDGF) A subunit to inactive the PDGF autocrine signaling loop. The autocrine PDGF loop is a hallmark of GBM. Results identify genes regulated by oncogenic PDGF signaling.", "type": "Expression profiling by array", "pubmed_id": "15994924", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1923", "order": "none", "update_date": "May 02 2006", "subsets": [ { "dataset_id": "GDS1730", "description": "wildtype", "sample_id": [ "GSM34592", "GSM34593", "GSM34594" ], "type": "genotype/variation", "id": "GDS1730_1" }, { "dataset_id": "GDS1730", "description": "neo-resistant", "sample_id": [ "GSM34580", "GSM34581", "GSM34582", "GSM34583", "GSM34584", "GSM34585" ], "type": "genotype/variation", "id": "GDS1730_2" }, { "dataset_id": "GDS1730", "description": "PDGF-A dominant-negative", "sample_id": [ "GSM34586", "GSM34587", "GSM34588", "GSM34589", "GSM34590", "GSM34591" ], "type": "genotype/variation", "id": "GDS1730_3" }, { "dataset_id": "GDS1730", "description": "untreated", "sample_id": [ "GSM34580", "GSM34581", "GSM34582", "GSM34583", "GSM34584", "GSM34585", "GSM34586", "GSM34587", "GSM34588", "GSM34592", "GSM34593", "GSM34594" ], "type": "agent", "id": "GDS1730_4" }, { "dataset_id": "GDS1730", "description": "exogenous PDGF", "sample_id": [ "GSM34589", "GSM34590", "GSM34591" ], "type": "agent", "id": "GDS1730_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1730", "version": 1.0, "instances": "15", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1730.tab", "compression": "gz" } ], [ [ "GDS1731.tab" ], { "title": "Caerulein effect on transcription factor Mist1 null pancreas", "description": "Analysis of pancreas from transcription factor Mist1 knockouts (Mist1KO) injected with caerulein. Mist1KOs exhibit disrupted cell morphology in adult pancreatic acini; caerulein induces acute pancreatitis. Results identify genes that may contribute to susceptibility and initiation of pancreatitis.", "type": "Expression profiling by array", "pubmed_id": "17170023", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3644", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1731", "description": "wild type", "sample_id": [ "GSM84549", "GSM84550", "GSM84551", "GSM84552", "GSM84553", "GSM84554" ], "type": "genotype/variation", "id": "GDS1731_1" }, { "dataset_id": "GDS1731", "description": "Mist1 null", "sample_id": [ "GSM84555", "GSM84556", "GSM84557", "GSM84558", "GSM84559", "GSM84560" ], "type": "genotype/variation", "id": "GDS1731_2" }, { "dataset_id": "GDS1731", "description": "control", "sample_id": [ "GSM84549", "GSM84550", "GSM84551", "GSM84555", "GSM84556", "GSM84557" ], "type": "agent", "id": "GDS1731_3" }, { "dataset_id": "GDS1731", "description": "caerulein", "sample_id": [ "GSM84552", "GSM84553", "GSM84554", "GSM84558", "GSM84559", "GSM84560" ], "type": "agent", "id": "GDS1731_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1731", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1731.tab", "compression": "gz" } ], [ [ "GDS1732.tab" ], { "title": "Papillary thyroid cancer", "description": "Expression profiling of 7 papillary thyroid carcinoma (PTC) samples. PTC is the most common type of thyroid cancer, representing up to 80% of all malignant thyroid tumors. Results provide insight into potential molecular markers for PTC.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE3678", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1732", "description": "normal", "sample_id": [ "GSM85215", "GSM85216", "GSM85217", "GSM85218", "GSM85219", "GSM85220", "GSM85221" ], "type": "disease state", "id": "GDS1732_1" }, { "dataset_id": "GDS1732", "description": "papillary thyroid cancer", "sample_id": [ "GSM85222", "GSM85223", "GSM85224", "GSM85225", "GSM85226", "GSM85227", "GSM85228" ], "type": "disease state", "id": "GDS1732_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1732", "version": 1.0, "instances": "14", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1732.tab", "compression": "gz" } ], [ [ "GDS1733.tab" ], { "title": "Heat shock transcription factor HSF1 depleted cells response to heat shock: time course", "description": "Analysis of HSF1-depleted HeLa cells at various time points up to 24 hours following heat shock treatment at 43 degrees C. Heat shock transcription factor HSF1 silenced using RNA interference (siHSF1_1, siHSF1_2). Results provide insight into the structure and function of the HSF1 signaling network.", "type": "Expression profiling by array", "pubmed_id": "17216044", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE3697", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1733", "description": "control", "sample_id": [ "GSM84590", "GSM84591", "GSM84592", "GSM84593", "GSM84594", "GSM84595", "GSM84596", "GSM84597", "GSM84598", "GSM84599", "GSM84600", "GSM84601", "GSM84602", "GSM84603", "GSM84604", "GSM84605", "GSM84606", "GSM84607" ], "type": "protocol", "id": "GDS1733_1" }, { "dataset_id": "GDS1733", "description": "HSF1 knockdown", "sample_id": [ "GSM84566", "GSM84567", "GSM84568", "GSM84569", "GSM84570", "GSM84571", "GSM84572", "GSM84573", "GSM84574", "GSM84575", "GSM84576", "GSM84577", "GSM84578", "GSM84579", "GSM84580", "GSM84581", "GSM84582", "GSM84583", "GSM84584", "GSM84585", "GSM84586", "GSM84587", "GSM84588", "GSM84589" ], "type": "protocol", "id": "GDS1733_2" }, { "dataset_id": "GDS1733", "description": "0 h", "sample_id": [ "GSM84566", "GSM84570", "GSM84571", "GSM84581", "GSM84582", "GSM84583", "GSM84590", "GSM84602", "GSM84603" ], "type": "time", "id": "GDS1733_3" }, { "dataset_id": "GDS1733", "description": "0.5 h", "sample_id": [ "GSM84572", "GSM84573", "GSM84574", "GSM84584", "GSM84585", "GSM84586", "GSM84604", "GSM84605", "GSM84606" ], "type": "time", "id": "GDS1733_4" }, { "dataset_id": "GDS1733", "description": "2 h", "sample_id": [ "GSM84575", "GSM84576", "GSM84577", "GSM84587", "GSM84588", "GSM84589", "GSM84591", "GSM84592", "GSM84593" ], "type": "time", "id": "GDS1733_5" }, { "dataset_id": "GDS1733", "description": "4 h", "sample_id": [ "GSM84567", "GSM84568", "GSM84569", "GSM84578", "GSM84579", "GSM84580", "GSM84594", "GSM84595", "GSM84607" ], "type": "time", "id": "GDS1733_6" }, { "dataset_id": "GDS1733", "description": "12 h", "sample_id": [ "GSM84596", "GSM84597", "GSM84598" ], "type": "time", "id": "GDS1733_7" }, { "dataset_id": "GDS1733", "description": "24 h", "sample_id": [ "GSM84599", "GSM84600", "GSM84601" ], "type": "time", "id": "GDS1733_8" }, { "dataset_id": "GDS1733", "description": "siLuc", "sample_id": [ "GSM84590", "GSM84591", "GSM84592", "GSM84593", "GSM84594", "GSM84595", "GSM84596", "GSM84597", "GSM84598", "GSM84599", "GSM84600", "GSM84601", "GSM84602", "GSM84603", "GSM84604", "GSM84605", "GSM84606", "GSM84607" ], "type": "agent", "id": "GDS1733_9" }, { "dataset_id": "GDS1733", "description": "siHSF1_1", "sample_id": [ "GSM84566", "GSM84567", "GSM84568", "GSM84569", "GSM84570", "GSM84571", "GSM84572", "GSM84573", "GSM84574", "GSM84575", "GSM84576", "GSM84577" ], "type": "agent", "id": "GDS1733_10" }, { "dataset_id": "GDS1733", "description": "siHSF1_2", "sample_id": [ "GSM84578", "GSM84579", "GSM84580", "GSM84581", "GSM84582", "GSM84583", "GSM84584", "GSM84585", "GSM84586", "GSM84587", "GSM84588", "GSM84589" ], "type": "agent", "id": "GDS1733_11" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS1733", "version": 1.0, "instances": "42", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1733.tab", "compression": "gz" } ], [ [ "GDS1734.tab" ], { "title": "Sucrose effect on dark-grown seedlings", "description": "Analysis of Columbia glabra (gl1-1) seedlings grown in the dark at 23\u00b0C for 4 days then treated with 90 mM sucrose for 6h. Sugar status regulates mechanisms controlling growth and development of plants. Results identify sucrose-modulated genes and provide insight into sugar sensing mechanisms.", "type": "Expression profiling by array", "pubmed_id": "16463203", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3704", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1734", "description": "control", "sample_id": [ "GSM38613", "GSM38614" ], "type": "agent", "id": "GDS1734_1" }, { "dataset_id": "GDS1734", "description": "sucrose", "sample_id": [ "GSM85538", "GSM85539" ], "type": "agent", "id": "GDS1734_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1734", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1734.tab", "compression": "gz" } ], [ [ "GDS1735.tab" ], { "title": "Vdelta1 and Vdelta2 gamma delta T cells response to non-TCR agonist stimulation", "description": "Analysis of Vdelta1 (Vd1) and Vdelta2 (Vd2) gamma delta (gd) T cells following stimulation with a non-TCR mediated agonist, PMA/ionomycin. Vd1 and Vd2 cells differ in tissue tropism, TCR usage, and agonist response. Results provide insight into the functional differences between Vd1 and Vd2 cells.", "type": "Expression profiling by array", "pubmed_id": "16423401", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3720", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1735", "description": "Vdelta1", "sample_id": [ "GSM85804", "GSM85805", "GSM85806", "GSM85807", "GSM85808", "GSM85809" ], "type": "cell type", "id": "GDS1735_1" }, { "dataset_id": "GDS1735", "description": "Vdelta2", "sample_id": [ "GSM85810", "GSM85811", "GSM85812", "GSM85813", "GSM85814", "GSM85815" ], "type": "cell type", "id": "GDS1735_2" }, { "dataset_id": "GDS1735", "description": "PBS", "sample_id": [ "GSM85804", "GSM85805", "GSM85810", "GSM85811" ], "type": "agent", "id": "GDS1735_3" }, { "dataset_id": "GDS1735", "description": "LPS", "sample_id": [ "GSM85806", "GSM85807", "GSM85812", "GSM85813" ], "type": "agent", "id": "GDS1735_4" }, { "dataset_id": "GDS1735", "description": "PMA, ionomycin", "sample_id": [ "GSM85808", "GSM85809", "GSM85814", "GSM85815" ], "type": "agent", "id": "GDS1735_5" }, { "dataset_id": "GDS1735", "description": "not stimulated", "sample_id": [ "GSM85804", "GSM85805", "GSM85810", "GSM85811" ], "type": "other", "id": "GDS1735_6" }, { "dataset_id": "GDS1735", "description": "TCR agonist", "sample_id": [ "GSM85806", "GSM85807", "GSM85812", "GSM85813" ], "type": "other", "id": "GDS1735_7" }, { "dataset_id": "GDS1735", "description": "non-TCR agonist", "sample_id": [ "GSM85808", "GSM85809", "GSM85814", "GSM85815" ], "type": "other", "id": "GDS1735_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS1735", "version": 1.0, "instances": "12", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1735.tab", "compression": "gz" } ], [ [ "GDS1736.tab" ], { "title": "Arachidonic acid effect on prostate cancer cells", "description": "Analysis of PC-3 prostate cancer cells incubated with arachidonic acid (AA). AA is an omega-6 fatty acid shown to induce cancer cell proliferation. Results suggest AA plays an important role in stimulation of growth-related genes and proliferation via phosphatidylinositol 3-kinase (PI3K) signaling.", "type": "Expression profiling by array", "pubmed_id": "16452198", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3737", "order": "none", "update_date": "May 31 2006", "subsets": [ { "dataset_id": "GDS1736", "description": "control", "sample_id": [ "GSM86079", "GSM86080", "GSM86081", "GSM86082" ], "type": "agent", "id": "GDS1736_1" }, { "dataset_id": "GDS1736", "description": "arachidonic acid", "sample_id": [ "GSM86083", "GSM86084", "GSM86085", "GSM86086" ], "type": "agent", "id": "GDS1736_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1736", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1736.tab", "compression": "gz" } ], [ [ "GDS1739.tab" ], { "title": "Primary mesodermal cells from various mutants perturbed for muscle development", "description": "Analysis of primary mesodermal cells from mutant embryos perturbed for the development of founder cells, fusion-competent myoblasts, or both myoblast types. 12 mutant genotypes examined. Results identify candidate myoblast subpopulation-specific genes and provide insight into embryonic myogenesis.", "type": "Expression profiling by array", "pubmed_id": "16482229", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "transformed count", "reference_series": "GSE3854", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1739", "description": "GFP negative", "sample_id": [ "GSM88220", "GSM88221", "GSM88222", "GSM88244", "GSM88245", "GSM88246", "GSM88259", "GSM88260", "GSM88261" ], "type": "protocol", "id": "GDS1739_1" }, { "dataset_id": "GDS1739", "description": "GFP positive", "sample_id": [ "GSM88211", "GSM88212", "GSM88213", "GSM88214", "GSM88215", "GSM88216", "GSM88217", "GSM88218", "GSM88219", "GSM88223", "GSM88224", "GSM88225", "GSM88226", "GSM88227", "GSM88228", "GSM88229", "GSM88230", "GSM88231", "GSM88232", "GSM88233", "GSM88234", "GSM88235", "GSM88236", "GSM88237", "GSM88238", "GSM88239", "GSM88240", "GSM88241", "GSM88242", "GSM88243", "GSM88247", "GSM88248", "GSM88249", "GSM88250", "GSM88251", "GSM88252", "GSM88253", "GSM88254", "GSM88255", "GSM88256", "GSM88257", "GSM88258", "GSM88262", "GSM88263", "GSM88264" ], "type": "protocol", "id": "GDS1739_2" }, { "dataset_id": "GDS1739", "description": "wild type", "sample_id": [ "GSM88220", "GSM88221", "GSM88222", "GSM88223", "GSM88224", "GSM88225", "GSM88244", "GSM88245", "GSM88246", "GSM88247", "GSM88248", "GSM88249", "GSM88259", "GSM88260", "GSM88261", "GSM88262", "GSM88263", "GSM88264" ], "type": "other", "id": "GDS1739_3" }, { "dataset_id": "GDS1739", "description": "loss of function", "sample_id": [ "GSM88217", "GSM88218", "GSM88219", "GSM88241", "GSM88242", "GSM88243", "GSM88250", "GSM88251", "GSM88252", "GSM88253", "GSM88254", "GSM88255" ], "type": "other", "id": "GDS1739_4" }, { "dataset_id": "GDS1739", "description": "gain of function", "sample_id": [ "GSM88211", "GSM88212", "GSM88213", "GSM88214", "GSM88215", "GSM88216", "GSM88226", "GSM88227", "GSM88228", "GSM88229", "GSM88230", "GSM88231", "GSM88232", "GSM88233", "GSM88234", "GSM88235", "GSM88236", "GSM88237", "GSM88238", "GSM88239", "GSM88240", "GSM88256", "GSM88257", "GSM88258" ], "type": "other", "id": "GDS1739_5" }, { "dataset_id": "GDS1739", "description": "wild type", "sample_id": [ "GSM88220", "GSM88221", "GSM88222", "GSM88223", "GSM88224", "GSM88225", "GSM88244", "GSM88245", "GSM88246", "GSM88247", "GSM88248", "GSM88249", "GSM88259", "GSM88260", "GSM88261", "GSM88262", "GSM88263", "GSM88264" ], "type": "genotype/variation", "id": "GDS1739_6" }, { "dataset_id": "GDS1739", "description": "EGFR", "sample_id": [ "GSM88211", "GSM88212", "GSM88213" ], "type": "genotype/variation", "id": "GDS1739_7" }, { "dataset_id": "GDS1739", "description": "FGFR", "sample_id": [ "GSM88214", "GSM88215", "GSM88216" ], "type": "genotype/variation", "id": "GDS1739_8" }, { "dataset_id": "GDS1739", "description": "spi", "sample_id": [ "GSM88217", "GSM88218", "GSM88219" ], "type": "genotype/variation", "id": "GDS1739_9" }, { "dataset_id": "GDS1739", "description": "Arm", "sample_id": [ "GSM88226", "GSM88227", "GSM88228" ], "type": "genotype/variation", "id": "GDS1739_10" }, { "dataset_id": "GDS1739", "description": "Arm, Ras", "sample_id": [ "GSM88229", "GSM88230", "GSM88231" ], "type": "genotype/variation", "id": "GDS1739_11" }, { "dataset_id": "GDS1739", "description": "Pnt", "sample_id": [ "GSM88232", "GSM88233", "GSM88234" ], "type": "genotype/variation", "id": "GDS1739_12" }, { "dataset_id": "GDS1739", "description": "Ras", "sample_id": [ "GSM88235", "GSM88236", "GSM88237" ], "type": "genotype/variation", "id": "GDS1739_13" }, { "dataset_id": "GDS1739", "description": "Tkv", "sample_id": [ "GSM88238", "GSM88239", "GSM88240" ], "type": "genotype/variation", "id": "GDS1739_14" }, { "dataset_id": "GDS1739", "description": "wg", "sample_id": [ "GSM88241", "GSM88242", "GSM88243" ], "type": "genotype/variation", "id": "GDS1739_15" }, { "dataset_id": "GDS1739", "description": "Dl", "sample_id": [ "GSM88250", "GSM88251", "GSM88252" ], "type": "genotype/variation", "id": "GDS1739_16" }, { "dataset_id": "GDS1739", "description": "lmd", "sample_id": [ "GSM88253", "GSM88254", "GSM88255" ], "type": "genotype/variation", "id": "GDS1739_17" }, { "dataset_id": "GDS1739", "description": "Notch", "sample_id": [ "GSM88256", "GSM88257", "GSM88258" ], "type": "genotype/variation", "id": "GDS1739_18" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1739", "version": 1.0, "instances": "54", "variables": 12131, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1739.tab", "compression": "gz" } ], [ [ "GDS174.tab" ], { "title": "Spermatogenesis regulation", "description": "Analysis of gene expression in follicle-stimulating hormone (FSH) treated Sertoli cells. Sertoli cells from 20 day rats were cultured in the presence of 25 ng/ml ovine FSH and gene expression monitored 0, 2, 4, 8 and 24 hours after addition of FSH.", "type": "Expression profiling by array", "pubmed_id": "12456799", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE509", "order": "ordered", "update_date": "Feb 23 2005", "subsets": [ { "dataset_id": "GDS174", "description": "0 h", "sample_id": [ "GSM2589", "GSM2590" ], "type": "time", "id": "GDS174_1" }, { "dataset_id": "GDS174", "description": "2 h", "sample_id": [ "GSM2592", "GSM2593" ], "type": "time", "id": "GDS174_2" }, { "dataset_id": "GDS174", "description": "4 h", "sample_id": [ "GSM2594", "GSM2596" ], "type": "time", "id": "GDS174_3" }, { "dataset_id": "GDS174", "description": "8 h", "sample_id": [ "GSM2598", "GSM2600" ], "type": "time", "id": "GDS174_4" }, { "dataset_id": "GDS174", "description": "24 h", "sample_id": [ "GSM29013", "GSM29014" ], "type": "time", "id": "GDS174_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS174", "version": 1.0, "instances": "10", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS174.tab", "compression": "gz" } ], [ [ "GDS1741.tab" ], { "title": "Vier F-Box VFB triple mutant seedlings", "description": "Expression profiling of 10-day-old light-grown Vier F-Box (VFB) triple mutant seedlings. F-box proteins are receptors for the plant growth hormone auxin and are involved in ubiquitin-mediated protein degradation.", "type": "Expression profiling by array", "pubmed_id": "17435085", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3863", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1741", "description": "wild type", "sample_id": [ "GSM88040", "GSM88041", "GSM88042" ], "type": "genotype/variation", "id": "GDS1741_1" }, { "dataset_id": "GDS1741", "description": "vfb triple mutant", "sample_id": [ "GSM88046", "GSM88047", "GSM88048" ], "type": "genotype/variation", "id": "GDS1741_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1741", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1741.tab", "compression": "gz" } ], [ [ "GDS1743.tab" ], { "title": "F-box protein AtFBP7 mutant seedlings", "description": "Expression profiling of 5-day-old light-grown fbp7-3 mutant seedlings. F-box protein AtFBP7 is required for efficient translation during temperature stress.", "type": "Expression profiling by array", "pubmed_id": "17240087", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3864", "order": "none", "update_date": "May 16 2011", "subsets": [ { "dataset_id": "GDS1743", "description": "wild type", "sample_id": [ "GSM88043", "GSM88044", "GSM88045" ], "type": "genotype/variation", "id": "GDS1743_1" }, { "dataset_id": "GDS1743", "description": "fbp7-3 mutant", "sample_id": [ "GSM88052", "GSM88053", "GSM88054" ], "type": "genotype/variation", "id": "GDS1743_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1743", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1743.tab", "compression": "gz" } ], [ [ "GDS1744.tab" ], { "title": "COP9 signalosome subunit 4 CSN4 mutant seedlings", "description": "Expression profiling of 7-day-old light-grown csn4-1 mutant seedlings. CSN4 is subunit 4 of the COP9 signalosome (CSN), a multifunctional protein complex of the ubiquitin-proteasome pathway. CSN is essential for development, but little is known about the specific role of its eight subunits.", "type": "Expression profiling by array", "pubmed_id": "17435085", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3865", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1744", "description": "wild type", "sample_id": [ "GSM88055", "GSM88056", "GSM88057" ], "type": "genotype/variation", "id": "GDS1744_1" }, { "dataset_id": "GDS1744", "description": "csn4-1 mutant", "sample_id": [ "GSM88049", "GSM88050", "GSM88051" ], "type": "genotype/variation", "id": "GDS1744_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1744", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1744.tab", "compression": "gz" } ], [ [ "GDS1745.tab" ], { "title": "Succinate semialdehyde dehydrogenase deficiency effect on the brain", "description": "Analysis of brain hippocampi, cerebella, and cortices of succinate semialdehyde dehydrogenase (SSADH)-deficient mutants at 3 weeks of age, when fatal seizures occur. Results indicate that SSADH deficiency results in the dysregulation of genes involved in myelin structure and compaction.", "type": "Expression profiling by array", "pubmed_id": "16601881", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2866", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1745", "description": "hippocampus", "sample_id": [ "GSM53361", "GSM53364", "GSM53367", "GSM53370", "GSM53373", "GSM53376" ], "type": "tissue", "id": "GDS1745_1" }, { "dataset_id": "GDS1745", "description": "cerebellum", "sample_id": [ "GSM53362", "GSM53365", "GSM53368", "GSM53371", "GSM53374", "GSM53377" ], "type": "tissue", "id": "GDS1745_2" }, { "dataset_id": "GDS1745", "description": "cortex", "sample_id": [ "GSM53363", "GSM53366", "GSM53369", "GSM53372", "GSM53375", "GSM53378" ], "type": "tissue", "id": "GDS1745_3" }, { "dataset_id": "GDS1745", "description": "wild-type", "sample_id": [ "GSM53370", "GSM53371", "GSM53372", "GSM53373", "GSM53374", "GSM53375", "GSM53376", "GSM53377", "GSM53378" ], "type": "genotype/variation", "id": "GDS1745_4" }, { "dataset_id": "GDS1745", "description": "Aldh5a1-/-", "sample_id": [ "GSM53361", "GSM53362", "GSM53363", "GSM53364", "GSM53365", "GSM53366", "GSM53367", "GSM53368", "GSM53369" ], "type": "genotype/variation", "id": "GDS1745_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1745", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1745.tab", "compression": "gz" } ], [ [ "GDS1746.tab" ], { "title": "Primary epithelial cell cultures from prostate tumors", "description": "Analysis of epithelial cell cultures from prostate tumor explants. Results identify an epithelial-restricted transcription profile that can be integrated with tumor grade and clinical information with the aim of discriminating indolent and aggressive prostate tumors that are histologically similar.", "type": "Expression profiling by array", "pubmed_id": "16513839", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE3868", "order": "none", "update_date": "Jun 02 2006", "subsets": [ { "dataset_id": "GDS1746", "description": "control culture", "sample_id": [ "GSM88407", "GSM88408", "GSM88409", "GSM88410", "GSM88411", "GSM88412", "GSM88413", "GSM88414" ], "type": "protocol", "id": "GDS1746_1" }, { "dataset_id": "GDS1746", "description": "primary culture", "sample_id": [ "GSM88347", "GSM88351", "GSM88353", "GSM88360", "GSM88389", "GSM88390", "GSM88391", "GSM88392", "GSM88393", "GSM88394", "GSM88395", "GSM88396", "GSM88397", "GSM88398", "GSM88399", "GSM88400", "GSM88401", "GSM88402", "GSM88403", "GSM88404", "GSM88405", "GSM88406" ], "type": "protocol", "id": "GDS1746_2" }, { "dataset_id": "GDS1746", "description": "normal", "sample_id": [ "GSM88407", "GSM88408" ], "type": "disease state", "id": "GDS1746_3" }, { "dataset_id": "GDS1746", "description": "benign hyperplasia", "sample_id": [ "GSM88409", "GSM88410" ], "type": "disease state", "id": "GDS1746_4" }, { "dataset_id": "GDS1746", "description": "basaloid", "sample_id": [ "GSM88411", "GSM88412", "GSM88413" ], "type": "disease state", "id": "GDS1746_5" }, { "dataset_id": "GDS1746", "description": "metastatic", "sample_id": [ "GSM88414" ], "type": "disease state", "id": "GDS1746_6" }, { "dataset_id": "GDS1746", "description": "Gleason score 6 tumor", "sample_id": [ "GSM88353", "GSM88397", "GSM88401", "GSM88402" ], "type": "disease state", "id": "GDS1746_7" }, { "dataset_id": "GDS1746", "description": "Gleason score 7 tumor", "sample_id": [ "GSM88351", "GSM88360", "GSM88389", "GSM88390", "GSM88391", "GSM88392", "GSM88393", "GSM88394", "GSM88395", "GSM88396", "GSM88398", "GSM88399", "GSM88400", "GSM88403", "GSM88404", "GSM88405", "GSM88406" ], "type": "disease state", "id": "GDS1746_8" }, { "dataset_id": "GDS1746", "description": "Gleason score 9 tumor", "sample_id": [ "GSM88347" ], "type": "disease state", "id": "GDS1746_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1746", "version": 1.0, "instances": "30", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1746.tab", "compression": "gz" } ], [ [ "GDS1747.tab" ], { "title": "SOD1-G93A transgenic model of amyotrophic lateral sclerosis: spinal cord", "description": "Analysis of spinal cord from SOD1-G93A transgenic model of amyotrophic lateral sclerosis (ALS) at 75 or 110 days of age. Cu/Zn superoxide dismutase mutations are a cause of ALS. Gene expression results, together with proteomic data, provide insight into functional changes underlying ALS progression.", "type": "Expression profiling by array", "pubmed_id": "16571896", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4390", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1747", "description": "nontransgenic", "sample_id": [ "GSM99330", "GSM99331" ], "type": "genotype/variation", "id": "GDS1747_1" }, { "dataset_id": "GDS1747", "description": "wild type SOD1 transgenic", "sample_id": [ "GSM99335", "GSM99336" ], "type": "genotype/variation", "id": "GDS1747_2" }, { "dataset_id": "GDS1747", "description": "G93A-SOD1 transgenic", "sample_id": [ "GSM99332", "GSM99334" ], "type": "genotype/variation", "id": "GDS1747_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1747", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1747.tab", "compression": "gz" } ], [ [ "GDS1748.tab" ], { "title": "Homeobox Lim1 mutant nephron-deficient kidneys", "description": "Analysis of embryonic day 14.5 and 18.5 kidneys from Lim1 conditional mutants. Lim1 is a homoebox gene that is essential for nephrogenesis. The mutant is ablated for Lim1 in the metanephric mesenchyme, resulting in nephron deficient kidneys. Results identify genes expressed in developing nephrons.", "type": "Expression profiling by array", "pubmed_id": "16464245", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4230", "order": "none", "update_date": "Jun 05 2006", "subsets": [ { "dataset_id": "GDS1748", "description": "E14.5", "sample_id": [ "GSM96563", "GSM96564", "GSM96565", "GSM96566" ], "type": "development stage", "id": "GDS1748_1" }, { "dataset_id": "GDS1748", "description": "E18.5", "sample_id": [ "GSM96567", "GSM96568", "GSM96569", "GSM96570" ], "type": "development stage", "id": "GDS1748_2" }, { "dataset_id": "GDS1748", "description": "control", "sample_id": [ "GSM96563", "GSM96564", "GSM96567", "GSM96568" ], "type": "genotype/variation", "id": "GDS1748_3" }, { "dataset_id": "GDS1748", "description": "Lim1 null mutant", "sample_id": [ "GSM96565", "GSM96566", "GSM96569", "GSM96570" ], "type": "genotype/variation", "id": "GDS1748_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1748", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1748.tab", "compression": "gz" } ], [ [ "GDS1750.tab" ], { "title": "Mantle cell lymphoma cell lines (HG-U133A)", "description": "Expression profiling of 4 mantle cell lymphoma (MCL) cell lines. MCL has the worst prognosis among B-cell lymphomas. Gene expression results combine with genomic profiling results to identify genes that are relevant to MCL pathogenesis and that could also represent possible therapeutic targets.", "type": "Expression profiling by array", "pubmed_id": "16409295", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE4176", "order": "none", "update_date": "Jun 19 2006", "subsets": [ { "dataset_id": "GDS1750", "description": "Granta-519", "sample_id": [ "GSM95562" ], "type": "cell line", "id": "GDS1750_1" }, { "dataset_id": "GDS1750", "description": "JeKo-1", "sample_id": [ "GSM95563" ], "type": "cell line", "id": "GDS1750_2" }, { "dataset_id": "GDS1750", "description": "NCEB1", "sample_id": [ "GSM95564" ], "type": "cell line", "id": "GDS1750_3" }, { "dataset_id": "GDS1750", "description": "REC", "sample_id": [ "GSM95565", "GSM95566" ], "type": "cell line", "id": "GDS1750_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1750", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1750.tab", "compression": "gz" } ], [ [ "GDS1752.tab" ], { "title": "Steady-state culture response to transient perturbations in carbon source: time course", "description": "Analysis of steady state cultures growing on galactose following a pulse of 0.2 or 2 grams of glucose per liter. Gene expression examined at various time points up to 4 hours after glucose addition. Results provide insight into the dynamics of the transcriptional response to changing environments.", "type": "Expression profiling by array", "pubmed_id": "16381818", "platform": "GPL3415", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10752", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "26", "value_type": "log2 ratio", "reference_series": "GSE4158", "order": "none", "update_date": "Jan 19 2007", "subsets": [ { "dataset_id": "GDS1752", "description": "0.2 g/L glucose", "sample_id": [ "GSM95002", "GSM95003", "GSM95004", "GSM95005", "GSM95006", "GSM95007", "GSM95008", "GSM95009", "GSM95010", "GSM95011", "GSM95012", "GSM95013" ], "type": "dose", "id": "GDS1752_1" }, { "dataset_id": "GDS1752", "description": "2 g/L glucose", "sample_id": [ "GSM94988", "GSM94989", "GSM94990", "GSM94991", "GSM94992", "GSM94993", "GSM94994", "GSM94995", "GSM94996", "GSM94997", "GSM94998", "GSM94999", "GSM95000", "GSM95001" ], "type": "dose", "id": "GDS1752_2" }, { "dataset_id": "GDS1752", "description": "2 min", "sample_id": [ "GSM95003" ], "type": "time", "id": "GDS1752_3" }, { "dataset_id": "GDS1752", "description": "3 min", "sample_id": [ "GSM94995" ], "type": "time", "id": "GDS1752_4" }, { "dataset_id": "GDS1752", "description": "4 min", "sample_id": [ "GSM95005" ], "type": "time", "id": "GDS1752_5" }, { "dataset_id": "GDS1752", "description": "5 min", "sample_id": [ "GSM94997" ], "type": "time", "id": "GDS1752_6" }, { "dataset_id": "GDS1752", "description": "6 min", "sample_id": [ "GSM95007" ], "type": "time", "id": "GDS1752_7" }, { "dataset_id": "GDS1752", "description": "7 min", "sample_id": [ "GSM94999" ], "type": "time", "id": "GDS1752_8" }, { "dataset_id": "GDS1752", "description": "8 min", "sample_id": [ "GSM95009" ], "type": "time", "id": "GDS1752_9" }, { "dataset_id": "GDS1752", "description": "10 min", "sample_id": [ "GSM94988", "GSM95010" ], "type": "time", "id": "GDS1752_10" }, { "dataset_id": "GDS1752", "description": "15 min", "sample_id": [ "GSM94989", "GSM95011" ], "type": "time", "id": "GDS1752_11" }, { "dataset_id": "GDS1752", "description": "20 min", "sample_id": [ "GSM94991", "GSM95012" ], "type": "time", "id": "GDS1752_12" }, { "dataset_id": "GDS1752", "description": "30 min", "sample_id": [ "GSM94992", "GSM95013" ], "type": "time", "id": "GDS1752_13" }, { "dataset_id": "GDS1752", "description": "45 min", "sample_id": [ "GSM94993", "GSM95002" ], "type": "time", "id": "GDS1752_14" }, { "dataset_id": "GDS1752", "description": "90 min", "sample_id": [ "GSM94994", "GSM95004" ], "type": "time", "id": "GDS1752_15" }, { "dataset_id": "GDS1752", "description": "120 min", "sample_id": [ "GSM94996", "GSM95006" ], "type": "time", "id": "GDS1752_16" }, { "dataset_id": "GDS1752", "description": "150 min", "sample_id": [ "GSM94998", "GSM95008" ], "type": "time", "id": "GDS1752_17" }, { "dataset_id": "GDS1752", "description": "180 min", "sample_id": [ "GSM95000" ], "type": "time", "id": "GDS1752_18" }, { "dataset_id": "GDS1752", "description": "210 min", "sample_id": [ "GSM95001" ], "type": "time", "id": "GDS1752_19" }, { "dataset_id": "GDS1752", "description": "240 min", "sample_id": [ "GSM94990" ], "type": "time", "id": "GDS1752_20" } ], "taxid": "4932", "genes": 7055, "aggregation_function": "mean", "name": "GDS1752", "version": 1.0, "instances": "26", "variables": 7058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1752.tab", "compression": "gz" } ], [ [ "GDS1753.tab" ], { "title": "Colchicine anti-inflammatory effect: time course and dose response", "description": "Analysis of umbilical vein endothelial cell line HUVEC at various time points up to 24 hours following treatment with 100 ng/ml or 1 ug/ml of colchicine. Colchicine is an alkaloid used to alleviate rheumatic complaints like gout and to prevent acute attacks of familial Mediterranean fever.", "type": "Expression profiling by array", "pubmed_id": "16188942", "platform": "GPL3386", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "41472", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log2 ratio", "reference_series": "GSE4090", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS1753", "description": "control", "sample_id": [ "GSM93635", "GSM93638", "GSM93641", "GSM93644", "GSM93645", "GSM93649", "GSM93650" ], "type": "dose", "id": "GDS1753_1" }, { "dataset_id": "GDS1753", "description": "100 ng per ml", "sample_id": [ "GSM93646", "GSM93648" ], "type": "dose", "id": "GDS1753_2" }, { "dataset_id": "GDS1753", "description": "1 ug per ml", "sample_id": [ "GSM93636", "GSM93637", "GSM93639", "GSM93640", "GSM93642", "GSM93643", "GSM93647" ], "type": "dose", "id": "GDS1753_3" }, { "dataset_id": "GDS1753", "description": "0 h", "sample_id": [ "GSM93635", "GSM93638", "GSM93649" ], "type": "time", "id": "GDS1753_4" }, { "dataset_id": "GDS1753", "description": "0.5 h", "sample_id": [ "GSM93642", "GSM93643" ], "type": "time", "id": "GDS1753_5" }, { "dataset_id": "GDS1753", "description": "2 h", "sample_id": [ "GSM93639", "GSM93646", "GSM93647" ], "type": "time", "id": "GDS1753_6" }, { "dataset_id": "GDS1753", "description": "12 h", "sample_id": [ "GSM93637", "GSM93640", "GSM93641", "GSM93644", "GSM93648" ], "type": "time", "id": "GDS1753_7" }, { "dataset_id": "GDS1753", "description": "24 h", "sample_id": [ "GSM93636", "GSM93645", "GSM93650" ], "type": "time", "id": "GDS1753_8" } ], "taxid": "9606", "genes": 32756, "aggregation_function": "mean", "name": "GDS1753", "version": 1.0, "instances": "16", "variables": 32759, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1753.tab", "compression": "gz" } ], [ [ "GDS1756.tab" ], { "title": "CAG repeat knock-in model of spinocerebellar ataxia type 1 progression", "description": "Analysis of cerebellum and forebrain tissue of knock-in mice carrying 154 CAG repeats in the spinocerebellar ataxia type 1 (SCA1) locus at 4 and 12 weeks of age. Results provide insight into the pathophysiology of the neurodegenerative disease SCA1.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2867", "order": "none", "update_date": "May 02 2006", "subsets": [ { "dataset_id": "GDS1756", "description": "wild-type", "sample_id": [ "GSM53344", "GSM53345", "GSM53346", "GSM53350", "GSM53351", "GSM53352", "GSM53355", "GSM53356", "GSM53359", "GSM53360" ], "type": "genotype/variation", "id": "GDS1756_1" }, { "dataset_id": "GDS1756", "description": "SCA1 model", "sample_id": [ "GSM53341", "GSM53342", "GSM53343", "GSM53347", "GSM53348", "GSM53349", "GSM53353", "GSM53354", "GSM53357", "GSM53358" ], "type": "genotype/variation", "id": "GDS1756_2" }, { "dataset_id": "GDS1756", "description": "cerebellum", "sample_id": [ "GSM53341", "GSM53342", "GSM53343", "GSM53344", "GSM53345", "GSM53346", "GSM53353", "GSM53354", "GSM53355", "GSM53356" ], "type": "tissue", "id": "GDS1756_3" }, { "dataset_id": "GDS1756", "description": "forebrain", "sample_id": [ "GSM53347", "GSM53348", "GSM53349", "GSM53350", "GSM53351", "GSM53352", "GSM53357", "GSM53358", "GSM53359", "GSM53360" ], "type": "tissue", "id": "GDS1756_4" }, { "dataset_id": "GDS1756", "description": "4 weeks", "sample_id": [ "GSM53341", "GSM53342", "GSM53343", "GSM53344", "GSM53345", "GSM53346", "GSM53347", "GSM53348", "GSM53349", "GSM53350", "GSM53351", "GSM53352" ], "type": "age", "id": "GDS1756_5" }, { "dataset_id": "GDS1756", "description": "12 weeks", "sample_id": [ "GSM53353", "GSM53354", "GSM53355", "GSM53356", "GSM53357", "GSM53358", "GSM53359", "GSM53360" ], "type": "age", "id": "GDS1756_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1756", "version": 1.0, "instances": "20", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1756.tab", "compression": "gz" } ], [ [ "GDS1757.tab" ], { "title": "Diurnal cycle effect in leaves: time course", "description": "Analysis of Col-0 leaves at various time points in a normal day-night cycle. Col-0 plants grown in 12-hour light 12-hour dark rhythm at 20 degrees C. Leaves collected 4, 8, and 12 h into the light period and into the night. Results identify genes that undergo diurnal changes of expression.", "type": "Expression profiling by array", "pubmed_id": "16299223", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3416", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1757", "description": "light", "sample_id": [ "GSM77055", "GSM77056", "GSM77057", "GSM77058", "GSM77059", "GSM77060", "GSM77061", "GSM77062", "GSM77063" ], "type": "protocol", "id": "GDS1757_1" }, { "dataset_id": "GDS1757", "description": "dark", "sample_id": [ "GSM77064", "GSM77065", "GSM77066", "GSM77067", "GSM77068", "GSM77069", "GSM77070", "GSM77071", "GSM77072" ], "type": "protocol", "id": "GDS1757_2" }, { "dataset_id": "GDS1757", "description": "0 h", "sample_id": [ "GSM77055", "GSM77056", "GSM77057" ], "type": "time", "id": "GDS1757_3" }, { "dataset_id": "GDS1757", "description": "4 h", "sample_id": [ "GSM77058", "GSM77059", "GSM77060" ], "type": "time", "id": "GDS1757_4" }, { "dataset_id": "GDS1757", "description": "8 h", "sample_id": [ "GSM77061", "GSM77062", "GSM77063" ], "type": "time", "id": "GDS1757_5" }, { "dataset_id": "GDS1757", "description": "12 h", "sample_id": [ "GSM77064", "GSM77065", "GSM77066" ], "type": "time", "id": "GDS1757_6" }, { "dataset_id": "GDS1757", "description": "16 h", "sample_id": [ "GSM77067", "GSM77068", "GSM77069" ], "type": "time", "id": "GDS1757_7" }, { "dataset_id": "GDS1757", "description": "20 h", "sample_id": [ "GSM77070", "GSM77071", "GSM77072" ], "type": "time", "id": "GDS1757_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1757", "version": 1.0, "instances": "18", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1757.tab", "compression": "gz" } ], [ [ "GDS1758.tab" ], { "title": "Pterygium", "description": "Expression profiling of primary pterygium tissue. Pterygium, a common ocular surface disorder, is a fibrovascular overgrowth from the conjunctiva onto the cornea. Results provide insight into pterygium pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "16488932", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2513", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1758", "description": "conjunctiva", "sample_id": [ "GSM48026", "GSM48027", "GSM48028", "GSM48037" ], "type": "tissue", "id": "GDS1758_1" }, { "dataset_id": "GDS1758", "description": "pterygium", "sample_id": [ "GSM48029", "GSM48030", "GSM48031", "GSM48032", "GSM48033", "GSM48034", "GSM48035", "GSM48036" ], "type": "tissue", "id": "GDS1758_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1758", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1758.tab", "compression": "gz" } ], [ [ "GDS1759.tab" ], { "title": "Retinas under a light-dark cycle and in constant dim light: time course", "description": "Analysis of retinas under a light-dark cycle at Zeitgeber times (ZT) 6 and 18 or in constant dim light at circadian times (CT) 6 and 18. Gene expression in retinas compared to that in pineal glands.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2868", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS1759", "description": "retina", "sample_id": [ "GSM53325", "GSM53326", "GSM53327", "GSM53328", "GSM53329", "GSM53330", "GSM53334", "GSM53335", "GSM53336", "GSM53337", "GSM53338", "GSM53339" ], "type": "tissue", "id": "GDS1759_1" }, { "dataset_id": "GDS1759", "description": "pineal gland", "sample_id": [ "GSM53331", "GSM53332", "GSM53333", "GSM53340" ], "type": "tissue", "id": "GDS1759_2" }, { "dataset_id": "GDS1759", "description": "constant dim light", "sample_id": [ "GSM53328", "GSM53329", "GSM53330", "GSM53332", "GSM53337", "GSM53338", "GSM53339", "GSM53340" ], "type": "protocol", "id": "GDS1759_3" }, { "dataset_id": "GDS1759", "description": "light-dark cycle", "sample_id": [ "GSM53325", "GSM53326", "GSM53327", "GSM53331", "GSM53334", "GSM53335", "GSM53336", "GSM53333" ], "type": "protocol", "id": "GDS1759_4" }, { "dataset_id": "GDS1759", "description": "CT 6", "sample_id": [ "GSM53328", "GSM53329", "GSM53330", "GSM53332" ], "type": "time", "id": "GDS1759_5" }, { "dataset_id": "GDS1759", "description": "CT 18", "sample_id": [ "GSM53337", "GSM53338", "GSM53339", "GSM53340" ], "type": "time", "id": "GDS1759_6" }, { "dataset_id": "GDS1759", "description": "ZT 6", "sample_id": [ "GSM53325", "GSM53326", "GSM53327", "GSM53331" ], "type": "time", "id": "GDS1759_7" }, { "dataset_id": "GDS1759", "description": "ZT 18", "sample_id": [ "GSM53334", "GSM53335", "GSM53336", "GSM53333" ], "type": "time", "id": "GDS1759_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1759", "version": 1.0, "instances": "16", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1759.tab", "compression": "gz" } ], [ [ "GDS1760.tab" ], { "title": "Telomerase reverse transcriptase immortalizing effect on fibroblasts and endothelial cells: time-course", "description": "Analysis of normal fibroblasts and endothelial cells, at various population doubling levels (PDLs), following human telomerase reverse transcriptase (hTERT) transfection. hTERT mediates cellular immortalization. Results identify cell-type specific transcriptional responses during immortalization.", "type": "Expression profiling by array", "pubmed_id": "15942647", "platform": "GPL1530", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "21168", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE1900", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1760", "description": "neonatal diploid fibroblasts", "sample_id": [ "GSM33930", "GSM33931", "GSM33932", "GSM33933", "GSM33934", "GSM33935" ], "type": "cell type", "id": "GDS1760_1" }, { "dataset_id": "GDS1760", "description": "umbilical vein endothelial cells", "sample_id": [ "GSM33936", "GSM33937", "GSM33938", "GSM33939", "GSM33940", "GSM33941" ], "type": "cell type", "id": "GDS1760_2" }, { "dataset_id": "GDS1760", "description": "PDL 104", "sample_id": [ "GSM33930", "GSM33931" ], "type": "time", "id": "GDS1760_3" }, { "dataset_id": "GDS1760", "description": "PDL 105", "sample_id": [ "GSM33936", "GSM33937" ], "type": "time", "id": "GDS1760_4" }, { "dataset_id": "GDS1760", "description": "PDL 145", "sample_id": [ "GSM33938", "GSM33939" ], "type": "time", "id": "GDS1760_5" }, { "dataset_id": "GDS1760", "description": "PDL 148", "sample_id": [ "GSM33932", "GSM33933" ], "type": "time", "id": "GDS1760_6" }, { "dataset_id": "GDS1760", "description": "PDL 216", "sample_id": [ "GSM33934", "GSM33935", "GSM33940", "GSM33941" ], "type": "time", "id": "GDS1760_7" } ], "taxid": "9606", "genes": 18629, "aggregation_function": "mean", "name": "GDS1760", "version": 1.0, "instances": "12", "variables": 18632, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1760.tab", "compression": "gz" } ], [ [ "GDS1761.tab" ], { "title": "NCI60 cancer cell lines", "description": "Analysis of 60 cell lines (the NCI60) derived from tumors from a variety of tissues and organs. Such cell lines are used extensively as experimental models of neoplastic disease. Results identify variation in gene expression patterns in the cell lines and their relationships to tumors in vivo.", "type": "Expression profiling by array", "pubmed_id": "10700174", "platform": "GPL1290", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9706", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "64", "value_type": "log2 ratio", "reference_series": "GSE2003", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1761", "description": "breast tumor", "sample_id": [ "GSM35908", "GSM35909", "GSM35910", "GSM35911", "GSM35912", "GSM35913", "GSM35914", "GSM35915", "GSM35916" ], "type": "cell line", "id": "GDS1761_1" }, { "dataset_id": "GDS1761", "description": "CNS tumor", "sample_id": [ "GSM35917", "GSM35918", "GSM35919", "GSM35920", "GSM35921", "GSM35922" ], "type": "cell line", "id": "GDS1761_2" }, { "dataset_id": "GDS1761", "description": "colon tumor", "sample_id": [ "GSM35923", "GSM35924", "GSM35925", "GSM35926", "GSM35927", "GSM35928", "GSM35929" ], "type": "cell line", "id": "GDS1761_3" }, { "dataset_id": "GDS1761", "description": "leukemia", "sample_id": [ "GSM35930", "GSM35931", "GSM35932", "GSM35933", "GSM35934", "GSM35935", "GSM35936", "GSM35937" ], "type": "cell line", "id": "GDS1761_4" }, { "dataset_id": "GDS1761", "description": "melanoma", "sample_id": [ "GSM35938", "GSM35939", "GSM35940", "GSM35941", "GSM35942", "GSM35943", "GSM35944", "GSM35945" ], "type": "cell line", "id": "GDS1761_5" }, { "dataset_id": "GDS1761", "description": "non-small cell lung cancer (NSCLC)", "sample_id": [ "GSM35946", "GSM35947", "GSM35948", "GSM35949", "GSM35950", "GSM35951", "GSM35952", "GSM35953", "GSM35954" ], "type": "cell line", "id": "GDS1761_6" }, { "dataset_id": "GDS1761", "description": "ovarian tumor", "sample_id": [ "GSM35955", "GSM35956", "GSM35957", "GSM35958", "GSM35959", "GSM35960" ], "type": "cell line", "id": "GDS1761_7" }, { "dataset_id": "GDS1761", "description": "prostate tumor", "sample_id": [ "GSM35961", "GSM35962" ], "type": "cell line", "id": "GDS1761_8" }, { "dataset_id": "GDS1761", "description": "renal tumor", "sample_id": [ "GSM35963", "GSM35964", "GSM35965", "GSM35966", "GSM35967", "GSM35968", "GSM35969", "GSM35970" ], "type": "cell line", "id": "GDS1761_9" }, { "dataset_id": "GDS1761", "description": "unknown", "sample_id": [ "GSM35971" ], "type": "cell line", "id": "GDS1761_10" } ], "taxid": "9606", "genes": 8804, "aggregation_function": "mean", "name": "GDS1761", "version": 1.0, "instances": "64", "variables": 8806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1761.tab", "compression": "gz" } ], [ [ "GDS1763.tab" ], { "title": "Cell culture model of extra-embryonic endoderm", "description": "Analysis of blastocyst-derived extra-embryonic endoderm (XEN) cell lines and an embryonic stem (ES) cell line. Results identify independent XEN cell lines that express markers of extra-embryonic endoderm, but not those of the epiblast, and thus represent a new model of an early mammalian lineage.", "type": "Expression profiling by array", "pubmed_id": "15753215", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2204", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1763", "description": "PO", "sample_id": [ "GSM40122", "GSM40123" ], "type": "strain", "id": "GDS1763_1" }, { "dataset_id": "GDS1763", "description": "ICR", "sample_id": [ "GSM40124" ], "type": "strain", "id": "GDS1763_2" }, { "dataset_id": "GDS1763", "description": "129/Sv", "sample_id": [ "GSM40110" ], "type": "strain", "id": "GDS1763_3" }, { "dataset_id": "GDS1763", "description": "gelatin w/ EMFIs", "sample_id": [ "GSM40122", "GSM40124" ], "type": "growth protocol", "id": "GDS1763_4" }, { "dataset_id": "GDS1763", "description": "plastic w/o EMFIs", "sample_id": [ "GSM40123" ], "type": "growth protocol", "id": "GDS1763_5" }, { "dataset_id": "GDS1763", "description": "gelatin w/o EMFIs", "sample_id": [ "GSM40110" ], "type": "growth protocol", "id": "GDS1763_6" }, { "dataset_id": "GDS1763", "description": "embryonic stem (ES)", "sample_id": [ "GSM40110" ], "type": "cell type", "id": "GDS1763_7" }, { "dataset_id": "GDS1763", "description": "extra-embryonic endoderm (XEN)", "sample_id": [ "GSM40122", "GSM40123", "GSM40124" ], "type": "cell type", "id": "GDS1763_8" }, { "dataset_id": "GDS1763", "description": "IM8A1-I", "sample_id": [ "GSM40122" ], "type": "cell line", "id": "GDS1763_9" }, { "dataset_id": "GDS1763", "description": "IM8A1-II", "sample_id": [ "GSM40123" ], "type": "cell line", "id": "GDS1763_10" }, { "dataset_id": "GDS1763", "description": "XEN1-3", "sample_id": [ "GSM40124" ], "type": "cell line", "id": "GDS1763_11" }, { "dataset_id": "GDS1763", "description": "R1", "sample_id": [ "GSM40110" ], "type": "cell line", "id": "GDS1763_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1763", "version": 1.0, "instances": "4", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1763.tab", "compression": "gz" } ], [ [ "GDS1765.tab" ], { "title": "Extraocular and hindlimb skeletal muscle cell differentiation: time course (MG-430A)", "description": "Analysis of cell lines derived from extraocular (EOM) and gastrocnemius skeletal muscle allotypes at various time points up to 48 hours following induction of myogenesis. Results provide insight into the early developmental mechanisms underlying the formation of skeletal muscle classes.", "type": "Expression profiling by array", "pubmed_id": "16291736", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE4463", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1765", "description": "extraocular muscle", "sample_id": [ "GSM16840", "GSM16841", "GSM16842", "GSM16843", "GSM16844", "GSM16845", "GSM16846", "GSM16847", "GSM16848", "GSM16849", "GSM16850", "GSM16851", "GSM16852", "GSM16853", "GSM16854" ], "type": "cell type", "id": "GDS1765_1" }, { "dataset_id": "GDS1765", "description": "hindlimb muscle", "sample_id": [ "GSM16855", "GSM16856", "GSM16857", "GSM16858", "GSM16859", "GSM16860", "GSM16861", "GSM16862", "GSM16863", "GSM16957", "GSM16958", "GSM16959", "GSM16960", "GSM16961", "GSM16962" ], "type": "cell type", "id": "GDS1765_2" }, { "dataset_id": "GDS1765", "description": "0 h", "sample_id": [ "GSM16840", "GSM16841", "GSM16842", "GSM16855", "GSM16856", "GSM16857" ], "type": "time", "id": "GDS1765_3" }, { "dataset_id": "GDS1765", "description": "4 h", "sample_id": [ "GSM16843", "GSM16844", "GSM16845", "GSM16858", "GSM16859", "GSM16860" ], "type": "time", "id": "GDS1765_4" }, { "dataset_id": "GDS1765", "description": "12 h", "sample_id": [ "GSM16846", "GSM16847", "GSM16848", "GSM16861", "GSM16862", "GSM16863" ], "type": "time", "id": "GDS1765_5" }, { "dataset_id": "GDS1765", "description": "24 h", "sample_id": [ "GSM16849", "GSM16850", "GSM16851", "GSM16957", "GSM16958", "GSM16959" ], "type": "time", "id": "GDS1765_6" }, { "dataset_id": "GDS1765", "description": "48 h", "sample_id": [ "GSM16852", "GSM16853", "GSM16854", "GSM16960", "GSM16961", "GSM16962" ], "type": "time", "id": "GDS1765_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1765", "version": 1.0, "instances": "30", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1765.tab", "compression": "gz" } ], [ [ "GDS1766.tab" ], { "title": "Extraocular and hindlimb skeletal muscle cell differentiation: time course (MG-430B)", "description": "Analysis of cell lines derived from extraocular (EOM) and gastrocnemius skeletal muscle allotypes at various time points up to 48 hours following induction of myogenesis. Results provide insight into the early developmental mechanisms underlying the formation of skeletal muscle classes.", "type": "Expression profiling by array", "pubmed_id": "16291736", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE4463", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1766", "description": "extraocular muscle", "sample_id": [ "GSM16963", "GSM16964", "GSM16965", "GSM16966", "GSM16967", "GSM16968", "GSM16969", "GSM16970", "GSM16971", "GSM16972", "GSM16973", "GSM16974", "GSM16975", "GSM16976", "GSM16977" ], "type": "cell type", "id": "GDS1766_1" }, { "dataset_id": "GDS1766", "description": "hindllimb muscle", "sample_id": [ "GSM16995", "GSM17004", "GSM17005", "GSM17010", "GSM17011", "GSM17012", "GSM17013", "GSM17014", "GSM17015", "GSM17016", "GSM17017", "GSM17018", "GSM17019", "GSM17020", "GSM17021" ], "type": "cell type", "id": "GDS1766_2" }, { "dataset_id": "GDS1766", "description": "0 h", "sample_id": [ "GSM16963", "GSM16964", "GSM16965", "GSM16995", "GSM17004", "GSM17005" ], "type": "time", "id": "GDS1766_3" }, { "dataset_id": "GDS1766", "description": "4 h", "sample_id": [ "GSM16966", "GSM16967", "GSM16968", "GSM17010", "GSM17011", "GSM17012" ], "type": "time", "id": "GDS1766_4" }, { "dataset_id": "GDS1766", "description": "12 h", "sample_id": [ "GSM16969", "GSM16970", "GSM16971", "GSM17013", "GSM17014", "GSM17015" ], "type": "time", "id": "GDS1766_5" }, { "dataset_id": "GDS1766", "description": "24 h", "sample_id": [ "GSM16972", "GSM16973", "GSM16974", "GSM17016", "GSM17017", "GSM17018" ], "type": "time", "id": "GDS1766_6" }, { "dataset_id": "GDS1766", "description": "48 h", "sample_id": [ "GSM16975", "GSM16976", "GSM16977", "GSM17019", "GSM17020", "GSM17021" ], "type": "time", "id": "GDS1766_7" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1766", "version": 1.0, "instances": "30", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1766.tab", "compression": "gz" } ], [ [ "GDS1767.tab" ], { "title": "Zucker diabetic fatty model of type 2 diabetes: various insulin-sensitive tissues", "description": "Analysis of adipose, skeletal muscle, and liver tissues of Zucker diabetic fatty animals at pre-diabetic and diabetic stages. ZDF animals have a mutated leptin receptor. Results provide insight into the molecular mechanisms responsible for insulin resistance and progression to type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "15821098", "platform": "GPL1002", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5184", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE1080", "order": "none", "update_date": "Jun 24 2008", "subsets": [ { "dataset_id": "GDS1767", "description": "6 wk", "sample_id": [ "GSM17229", "GSM17230", "GSM17231", "GSM17232", "GSM17233", "GSM17234", "GSM17235", "GSM17236", "GSM17237", "GSM17247", "GSM17248", "GSM17249" ], "type": "age", "id": "GDS1767_1" }, { "dataset_id": "GDS1767", "description": "12 wk", "sample_id": [ "GSM17250", "GSM17251", "GSM17252", "GSM17253", "GSM17254", "GSM17255", "GSM17256", "GSM17257", "GSM17258", "GSM17259", "GSM17260", "GSM17261" ], "type": "age", "id": "GDS1767_2" }, { "dataset_id": "GDS1767", "description": "adipose", "sample_id": [ "GSM17229", "GSM17230", "GSM17231", "GSM17232", "GSM17250", "GSM17251", "GSM17252", "GSM17253" ], "type": "tissue", "id": "GDS1767_3" }, { "dataset_id": "GDS1767", "description": "muscle", "sample_id": [ "GSM17233", "GSM17234", "GSM17235", "GSM17236", "GSM17254", "GSM17255", "GSM17256", "GSM17257" ], "type": "tissue", "id": "GDS1767_4" }, { "dataset_id": "GDS1767", "description": "liver", "sample_id": [ "GSM17237", "GSM17247", "GSM17248", "GSM17249", "GSM17258", "GSM17259", "GSM17260", "GSM17261" ], "type": "tissue", "id": "GDS1767_5" } ], "taxid": "10116", "genes": 5026, "aggregation_function": "mean", "name": "GDS1767", "version": 1.0, "instances": "24", "variables": 5029, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1767.tab", "compression": "gz" } ], [ [ "GDS1768.tab" ], { "title": "Platelet-derived growth factor effect on fibroblasts: time course", "description": "Expression profiling of AG01518 foreskin fibroblasts at various time points up to 24 hours following stimulation with 10 ng/ml platelet-derived growth factor (PDGF). PDGF is a potent mitogen for fibroblasts and other cells of mesenchymal origin. Results identify genes regulated by PDGF.", "type": "Expression profiling by array", "pubmed_id": "15213220", "platform": "GPL506", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9928", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log2 ratio", "reference_series": "GSE1484", "order": "ordered", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS1768", "description": "1 h", "sample_id": [ "GSM25346", "GSM25347", "GSM25354", "GSM25704" ], "type": "time", "id": "GDS1768_1" }, { "dataset_id": "GDS1768", "description": "4 h", "sample_id": [ "GSM25705", "GSM25706", "GSM25707", "GSM25708", "GSM25709" ], "type": "time", "id": "GDS1768_2" }, { "dataset_id": "GDS1768", "description": "10 h", "sample_id": [ "GSM25710", "GSM25711", "GSM25712", "GSM25713" ], "type": "time", "id": "GDS1768_3" }, { "dataset_id": "GDS1768", "description": "24 h", "sample_id": [ "GSM25714", "GSM25715", "GSM25716", "GSM25717", "GSM25718" ], "type": "time", "id": "GDS1768_4" } ], "taxid": "9606", "genes": 7491, "aggregation_function": "mean", "name": "GDS1768", "version": 1.0, "instances": "18", "variables": 7493, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1768.tab", "compression": "gz" } ], [ [ "GDS177.tab" ], { "title": "Cytomegalovirus strain comparison", "description": "Human foreskin fibroblasts (HFF) infected with cytomegalovirus strains fhCMV-H (rapid spread in vitro) and fhCMV-T (slow spread in vitro). UV-inactivated viruses also examined to control for response to coat glycoprotein B and active viral infection.", "type": "Expression profiling by array", "pubmed_id": "12361756", "platform": "GPL44", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "17588", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log ratio", "reference_series": "GSE453", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS177", "description": "active", "sample_id": [ "GSM825", "GSM827", "GSM828", "GSM829", "GSM830", "GSM831", "GSM832", "GSM833" ], "type": "protocol", "id": "GDS177_1" }, { "dataset_id": "GDS177", "description": "UV-inactivated", "sample_id": [ "GSM6822", "GSM6823", "GSM6824", "GSM6825", "GSM6818", "GSM6819", "GSM6820", "GSM6821" ], "type": "protocol", "id": "GDS177_2" }, { "dataset_id": "GDS177", "description": "fhCMV-T", "sample_id": [ "GSM825", "GSM827", "GSM828", "GSM6822", "GSM6823", "GSM6824", "GSM6825" ], "type": "strain", "id": "GDS177_3" }, { "dataset_id": "GDS177", "description": "fhCMV-H", "sample_id": [ "GSM829", "GSM830", "GSM831", "GSM6818", "GSM6819", "GSM6820", "GSM6821" ], "type": "strain", "id": "GDS177_4" }, { "dataset_id": "GDS177", "description": "CMV_AD169", "sample_id": [ "GSM832", "GSM833" ], "type": "strain", "id": "GDS177_5" } ], "taxid": "9606", "genes": 16036, "aggregation_function": "mean", "name": "GDS177", "version": 1.0, "instances": "16", "variables": 16039, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS177.tab", "compression": "gz" } ], [ [ "GDS1771.tab" ], { "title": "MicroRNA miR-430 effect on maternal-zygotic (MZ) dicer mutant embryos", "description": "Analysis of maternal-zygotic (MZ) dicer mutant embryos that lack miR-430 and mutants rescued with miR-430. MZdicer mutants cannot generate mature miRNAs; miR-430 accumulates during maternal-to-zygotic transition and regulates morphogenesis during early development. Results identify miR-430 targets.", "type": "Expression profiling by array", "pubmed_id": "16484454", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE4201", "order": "none", "update_date": "Jan 23 2007", "subsets": [ { "dataset_id": "GDS1771", "description": "16 cell stage", "sample_id": [ "GSM95611", "GSM95612" ], "type": "development stage", "id": "GDS1771_1" }, { "dataset_id": "GDS1771", "description": "5 hours post fertilization", "sample_id": [ "GSM95613" ], "type": "development stage", "id": "GDS1771_2" }, { "dataset_id": "GDS1771", "description": "9 hours post fertilization", "sample_id": [ "GSM95614", "GSM95615", "GSM95616", "GSM95617", "GSM95618", "GSM95619", "GSM95620", "GSM95621", "GSM95622", "GSM95623", "GSM95624", "GSM95625" ], "type": "development stage", "id": "GDS1771_3" }, { "dataset_id": "GDS1771", "description": "wild type", "sample_id": [ "GSM95611", "GSM95612", "GSM95613", "GSM95623", "GSM95624", "GSM95625", "GSM95620", "GSM95621", "GSM95622" ], "type": "genotype/variation", "id": "GDS1771_4" }, { "dataset_id": "GDS1771", "description": "injected with miR-430", "sample_id": [ "GSM95620", "GSM95621", "GSM95622", "GSM95614", "GSM95615", "GSM95616" ], "type": "protocol", "id": "GDS1771_5" }, { "dataset_id": "GDS1771", "description": "MZdicer mutant", "sample_id": [ "GSM95617", "GSM95618", "GSM95619", "GSM95614", "GSM95615", "GSM95616" ], "type": "genotype/variation", "id": "GDS1771_6" }, { "dataset_id": "GDS1771", "description": "not applicable", "sample_id": [ "GSM95617", "GSM95618", "GSM95619", "GSM95611", "GSM95612", "GSM95613", "GSM95623", "GSM95624", "GSM95625" ], "type": "protocol", "id": "GDS1771_7" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS1771", "version": 1.0, "instances": "15", "variables": 13304, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1771.tab", "compression": "gz" } ], [ [ "GDS1772.tab" ], { "title": "Hypoxia effect on vhl and p53 null mutants", "description": "Analysis of cell lines lacking VHL or p53 following exposure to hypoxia. VHL is the gene responsible for degrading transcription factor HIF-1. p53 null mutants examined to identify genes whose expression under hypoxia depends on p53. Results identify genes regulated by HIF-1.", "type": "Expression profiling by array", "pubmed_id": "16517406", "platform": "GPL3423", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35409", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE4186", "order": "none", "update_date": "Mar 14 2006", "subsets": [ { "dataset_id": "GDS1772", "description": "control", "sample_id": [ "GSM95386", "GSM95397", "GSM95549", "GSM95551", "GSM95577", "GSM95579", "GSM95581", "GSM95584" ], "type": "stress", "id": "GDS1772_1" }, { "dataset_id": "GDS1772", "description": "hypoxia", "sample_id": [ "GSM95554", "GSM95558", "GSM95555", "GSM95559", "GSM95556", "GSM95560", "GSM95557", "GSM95561", "GSM95396", "GSM95398", "GSM95550", "GSM95552", "GSM95582", "GSM95585", "GSM95578", "GSM95580", "GSM95583", "GSM95586" ], "type": "stress", "id": "GDS1772_2" }, { "dataset_id": "GDS1772", "description": "hypoxia 1 hr reoxygenation", "sample_id": [ "GSM95572", "GSM95574" ], "type": "stress", "id": "GDS1772_3" }, { "dataset_id": "GDS1772", "description": "hypoxia 4 hr reoxygenation", "sample_id": [ "GSM95573", "GSM95575" ], "type": "stress", "id": "GDS1772_4" }, { "dataset_id": "GDS1772", "description": "RCC4", "sample_id": [ "GSM95386", "GSM95396", "GSM95549", "GSM95550", "GSM95554", "GSM95555", "GSM95556", "GSM95557", "GSM95572", "GSM95573", "GSM95397", "GSM95398", "GSM95551", "GSM95552", "GSM95558", "GSM95559", "GSM95560", "GSM95561", "GSM95574", "GSM95575" ], "type": "cell line", "id": "GDS1772_5" }, { "dataset_id": "GDS1772", "description": "H1299", "sample_id": [ "GSM95577", "GSM95578", "GSM95579", "GSM95580" ], "type": "cell line", "id": "GDS1772_6" }, { "dataset_id": "GDS1772", "description": "HCT116", "sample_id": [ "GSM95581", "GSM95582", "GSM95583", "GSM95584", "GSM95585", "GSM95586" ], "type": "cell line", "id": "GDS1772_7" }, { "dataset_id": "GDS1772", "description": "vhl minus", "sample_id": [ "GSM95386", "GSM95396", "GSM95549", "GSM95550", "GSM95554", "GSM95555", "GSM95556", "GSM95557", "GSM95572", "GSM95573" ], "type": "genotype/variation", "id": "GDS1772_8" }, { "dataset_id": "GDS1772", "description": "vhl plus", "sample_id": [ "GSM95397", "GSM95398", "GSM95551", "GSM95552", "GSM95558", "GSM95559", "GSM95560", "GSM95561", "GSM95574", "GSM95575" ], "type": "genotype/variation", "id": "GDS1772_9" }, { "dataset_id": "GDS1772", "description": "p53 minus", "sample_id": [ "GSM95577", "GSM95578", "GSM95581", "GSM95582", "GSM95583" ], "type": "genotype/variation", "id": "GDS1772_10" }, { "dataset_id": "GDS1772", "description": "p53 plus", "sample_id": [ "GSM95579", "GSM95580", "GSM95584", "GSM95585", "GSM95586" ], "type": "genotype/variation", "id": "GDS1772_11" }, { "dataset_id": "GDS1772", "description": "0 h", "sample_id": [ "GSM95386", "GSM95397", "GSM95549", "GSM95551", "GSM95577", "GSM95579", "GSM95581", "GSM95584" ], "type": "time", "id": "GDS1772_12" }, { "dataset_id": "GDS1772", "description": "1 h", "sample_id": [ "GSM95554", "GSM95558" ], "type": "time", "id": "GDS1772_13" }, { "dataset_id": "GDS1772", "description": "2 h", "sample_id": [ "GSM95555", "GSM95559" ], "type": "time", "id": "GDS1772_14" }, { "dataset_id": "GDS1772", "description": "4 h", "sample_id": [ "GSM95556", "GSM95560" ], "type": "time", "id": "GDS1772_15" }, { "dataset_id": "GDS1772", "description": "6 h", "sample_id": [ "GSM95557", "GSM95561" ], "type": "time", "id": "GDS1772_16" }, { "dataset_id": "GDS1772", "description": "12 h", "sample_id": [ "GSM95582", "GSM95585" ], "type": "time", "id": "GDS1772_17" }, { "dataset_id": "GDS1772", "description": "18 h", "sample_id": [ "GSM95396", "GSM95398", "GSM95550", "GSM95552", "GSM95572", "GSM95574", "GSM95573", "GSM95575" ], "type": "time", "id": "GDS1772_18" }, { "dataset_id": "GDS1772", "description": "24 h", "sample_id": [ "GSM95578", "GSM95580", "GSM95583", "GSM95586" ], "type": "time", "id": "GDS1772_19" } ], "taxid": "9606", "genes": 31013, "aggregation_function": "mean", "name": "GDS1772", "version": 1.0, "instances": "30", "variables": 31018, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1772.tab", "compression": "gz" } ], [ [ "GDS1773.tab" ], { "title": "B-form DNA transfection effect on TBK1 and IKKi deficient embryonic fibroblasts", "description": "Analysis of embryonic fibroblast deficient in kinases TBK1, IKKi (Ikbke), or both following transfection with B-form DNA. B-DNA transfection triggers interferon-beta production via TBK1 and IKKi. Results provide insight into the mechanisms of intracellular recognition of DNA during infection.", "type": "Expression profiling by array", "pubmed_id": "16286919", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4171", "order": "none", "update_date": "Nov 14 2006", "subsets": [ { "dataset_id": "GDS1773", "description": "mock", "sample_id": [ "GSM95395", "GSM95404", "GSM95406", "GSM95408" ], "type": "agent", "id": "GDS1773_1" }, { "dataset_id": "GDS1773", "description": "B-DNA", "sample_id": [ "GSM95403", "GSM95405", "GSM95407", "GSM95409" ], "type": "agent", "id": "GDS1773_2" }, { "dataset_id": "GDS1773", "description": "wild type", "sample_id": [ "GSM95395", "GSM95403" ], "type": "genotype/variation", "id": "GDS1773_3" }, { "dataset_id": "GDS1773", "description": "Tbk1 -/-", "sample_id": [ "GSM95404", "GSM95405" ], "type": "genotype/variation", "id": "GDS1773_4" }, { "dataset_id": "GDS1773", "description": "Ikbke -/-", "sample_id": [ "GSM95406", "GSM95407" ], "type": "genotype/variation", "id": "GDS1773_5" }, { "dataset_id": "GDS1773", "description": "Tbk1 -/-, Ikbke -/-", "sample_id": [ "GSM95408", "GSM95409" ], "type": "genotype/variation", "id": "GDS1773_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1773", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1773.tab", "compression": "gz" } ], [ [ "GDS1774.tab" ], { "title": "Chronic hepatitis C infection response to Agaricus blazei medicinal extract: peripheral blood cells", "description": "Analysis of peripheral blood cells from chronic hepatitis patients following oral administration of Agaricus blazei Murill (AbM) extract 3 times daily for 1 week. AbM extracts are used as a non-prescription remedy for cancer and infections, including hepatitis.", "type": "Expression profiling by array", "pubmed_id": "16782544", "platform": "GPL3307", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "36179", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3983", "order": "none", "update_date": "Mar 15 2006", "subsets": [ { "dataset_id": "GDS1774", "description": "patient 2", "sample_id": [ "GSM90667", "GSM90863" ], "type": "individual", "id": "GDS1774_1" }, { "dataset_id": "GDS1774", "description": "patient 3", "sample_id": [ "GSM90860", "GSM90864" ], "type": "individual", "id": "GDS1774_2" }, { "dataset_id": "GDS1774", "description": "patient 4", "sample_id": [ "GSM90861", "GSM90865" ], "type": "individual", "id": "GDS1774_3" }, { "dataset_id": "GDS1774", "description": "patient 5", "sample_id": [ "GSM90862", "GSM90866" ], "type": "individual", "id": "GDS1774_4" }, { "dataset_id": "GDS1774", "description": "control", "sample_id": [ "GSM90667", "GSM90860", "GSM90861", "GSM90862" ], "type": "agent", "id": "GDS1774_5" }, { "dataset_id": "GDS1774", "description": "Agaricus extract", "sample_id": [ "GSM90863", "GSM90864", "GSM90865", "GSM90866" ], "type": "agent", "id": "GDS1774_6" } ], "taxid": "9606", "genes": 30866, "aggregation_function": "mean", "name": "GDS1774", "version": 1.0, "instances": "8", "variables": 30869, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1774.tab", "compression": "gz" } ], [ [ "GDS1776.tab" ], { "title": "B3 domain transcription factor LEC2 induction effect on seedlings: time course", "description": "Analysis of 8-day-old seedlings at 1 or 4 hours following induction of the B3 domain transcription factor LEAFY COTYLEDON2 (LEC2). LEC2 induced from a 35S:LEC2-glucocorticoid receptor transgene using dexamethasone. Results provide insight into the role of LEC2 in embryogenesis.", "type": "Expression profiling by array", "pubmed_id": "16492731", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3959", "order": "none", "update_date": "Nov 06 2006", "subsets": [ { "dataset_id": "GDS1776", "description": "wild type", "sample_id": [ "GSM90298", "GSM90299" ], "type": "strain", "id": "GDS1776_1" }, { "dataset_id": "GDS1776", "description": "LEC2 transgenic", "sample_id": [ "GSM90292", "GSM90293", "GSM90294", "GSM90295", "GSM90296", "GSM90297" ], "type": "strain", "id": "GDS1776_2" }, { "dataset_id": "GDS1776", "description": "0 h", "sample_id": [ "GSM90292", "GSM90293" ], "type": "time", "id": "GDS1776_3" }, { "dataset_id": "GDS1776", "description": "1 h", "sample_id": [ "GSM90294", "GSM90295" ], "type": "time", "id": "GDS1776_4" }, { "dataset_id": "GDS1776", "description": "4 h", "sample_id": [ "GSM90296", "GSM90297", "GSM90298", "GSM90299" ], "type": "time", "id": "GDS1776_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1776", "version": 1.0, "instances": "8", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1776.tab", "compression": "gz" } ], [ [ "GDS1777.tab" ], { "title": "Colon tubular adenoma and carcinoma cells", "description": "Analysis of colon tubular adenoma and carcinoma cells microdissected from formalin-fixed paraffin-embedded sections of colon tubular adenomas containing focal adenocarcinomas. Results provide insight into the progression of colon cancers from pre-existing adenomas.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1818", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8170", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE3880", "order": "none", "update_date": "Nov 03 2006", "subsets": [ { "dataset_id": "GDS1777", "description": "adenoma", "sample_id": [ "GSM88316", "GSM88317", "GSM88318", "GSM88319" ], "type": "disease state", "id": "GDS1777_1" }, { "dataset_id": "GDS1777", "description": "carcinoma", "sample_id": [ "GSM88320", "GSM88321", "GSM88322", "GSM88323" ], "type": "disease state", "id": "GDS1777_2" } ], "taxid": "9606", "genes": 7704, "aggregation_function": "mean", "name": "GDS1777", "version": 1.0, "instances": "8", "variables": 7706, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1777.tab", "compression": "gz" } ], [ [ "GDS1778.tab" ], { "title": "Alpha2-laminin deficient dy/dy model of muscular dystrophy: diaphragm", "description": "Analysis of diaphragms of alpha2-laminin deficient dy/dy animals. Alpha-2 laminin is important in muscle cell attachment, and its deficiency underlies classical congenital muscular dystrophy. Results provide insight into the events that link alpha2-laminin deficiency with muscle fiber necrosis.", "type": "Expression profiling by array", "pubmed_id": "16368874", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3252", "order": "none", "update_date": "Mar 16 2006", "subsets": [ { "dataset_id": "GDS1778", "description": "control", "sample_id": [ "GSM73331", "GSM73332", "GSM73333", "GSM73334" ], "type": "disease state", "id": "GDS1778_1" }, { "dataset_id": "GDS1778", "description": "dystrophic", "sample_id": [ "GSM73335", "GSM73336", "GSM73337", "GSM73338" ], "type": "disease state", "id": "GDS1778_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1778", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1778.tab", "compression": "gz" } ], [ [ "GDS1779.tab" ], { "title": "Hypoxia effect on astrocytes", "description": "Analysis of purified primary astrocytes exposed to hypoxia for 24 hours. Gene expression in HeLa cells also examined. Astrocytes play critical roles in the proper functioning of the brain. Results provide insight into the molecular events underlying the astrocytic responses to hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16507782", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4483", "order": "none", "update_date": "Mar 16 2006", "subsets": [ { "dataset_id": "GDS1779", "description": "HeLa", "sample_id": [ "GSM67046", "GSM67047", "GSM67048", "GSM67049", "GSM67050", "GSM67051" ], "type": "cell type", "id": "GDS1779_1" }, { "dataset_id": "GDS1779", "description": "astrocyte", "sample_id": [ "GSM66929", "GSM66930", "GSM66931", "GSM66932", "GSM66933", "GSM66934" ], "type": "cell type", "id": "GDS1779_2" }, { "dataset_id": "GDS1779", "description": "normoxia", "sample_id": [ "GSM66932", "GSM66933", "GSM66934", "GSM67049", "GSM67050", "GSM67051" ], "type": "stress", "id": "GDS1779_3" }, { "dataset_id": "GDS1779", "description": "hypoxia", "sample_id": [ "GSM66929", "GSM66930", "GSM66931", "GSM67046", "GSM67047", "GSM67048" ], "type": "stress", "id": "GDS1779_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1779", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1779.tab", "compression": "gz" } ], [ [ "GDS1780.tab" ], { "title": "Colorectal cancer progression: polysomal mRNA profiles", "description": "Comparison of polysomal RNA from isogenic cell lines established from a colorectal cancer (CRC) patient. SW480 and SW620 cells derived from the primary tumor and a lymph node metastasis, respectively. The cell lines constitute a cellular model of CRC transition from invasive carcinoma to metastasis.", "type": "Expression profiling by array", "pubmed_id": "16531451", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2509", "order": "none", "update_date": "Nov 03 2006", "subsets": [ { "dataset_id": "GDS1780", "description": "primary tumor", "sample_id": [ "GSM47872", "GSM47873", "GSM47874" ], "type": "disease state", "id": "GDS1780_1" }, { "dataset_id": "GDS1780", "description": "lymph node metastasis", "sample_id": [ "GSM47875", "GSM47876", "GSM47877" ], "type": "disease state", "id": "GDS1780_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1780", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1780.tab", "compression": "gz" } ], [ [ "GDS1783.tab" ], { "title": "Vascular smooth muscle response to voltage-dependent and store-operated calcium channel activation", "description": "Analysis of cerebral vascular smooth muscle cells after activation of voltage-dependent (VDCCs) or store-operated calcium channels (SOCCs). VDCCs activated by K+ depolarization and SOCCs by thapsigargin. Results provide insight into the effect of different calcium signals on gene expression.", "type": "Expression profiling by array", "pubmed_id": "16461377", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE2883", "order": "none", "update_date": "Oct 18 2006", "subsets": [ { "dataset_id": "GDS1783", "description": "control", "sample_id": [ "GSM63074", "GSM63077", "GSM63078" ], "type": "agent", "id": "GDS1783_1" }, { "dataset_id": "GDS1783", "description": "thapsigargin", "sample_id": [ "GSM63080", "GSM63081", "GSM63082" ], "type": "agent", "id": "GDS1783_2" }, { "dataset_id": "GDS1783", "description": "high potassium", "sample_id": [ "GSM63083", "GSM63084", "GSM63086" ], "type": "agent", "id": "GDS1783_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1783", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1783.tab", "compression": "gz" } ], [ [ "GDS1784.tab" ], { "title": "Protein kinase B alpha knockout effect on adipogenesis: time course", "description": "Analysis of protein kinase B alpha (PKBalpha) knockout embryonic fibroblasts (MEFs) following treatment with a standard induction cocktail to induce differentiation into adipocytes. Cells examined up to 48 hours following treatment. Results provide insight into the role of PKBalpha in adipogenesis.", "type": "Expression profiling by array", "pubmed_id": "16478789", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE2746", "order": "none", "update_date": "Oct 18 2006", "subsets": [ { "dataset_id": "GDS1784", "description": "wild type", "sample_id": [ "GSM60203", "GSM60204", "GSM60205", "GSM60206", "GSM60207", "GSM60208", "GSM60209", "GSM60210", "GSM60211", "GSM60212", "GSM60223", "GSM60224", "GSM60225", "GSM60226", "GSM60227", "GSM60228", "GSM60229", "GSM60230" ], "type": "genotype/variation", "id": "GDS1784_1" }, { "dataset_id": "GDS1784", "description": "PKB alpha null", "sample_id": [ "GSM60213", "GSM60214", "GSM60215", "GSM60216", "GSM60217", "GSM60218", "GSM60219", "GSM60220", "GSM60221", "GSM60222", "GSM60231", "GSM60232", "GSM60233", "GSM60234", "GSM60235", "GSM60236", "GSM60237", "GSM60238" ], "type": "genotype/variation", "id": "GDS1784_2" }, { "dataset_id": "GDS1784", "description": "0 h", "sample_id": [ "GSM60203", "GSM60204", "GSM60213", "GSM60214", "GSM60223", "GSM60224", "GSM60231", "GSM60232" ], "type": "time", "id": "GDS1784_3" }, { "dataset_id": "GDS1784", "description": "2 h", "sample_id": [ "GSM60205", "GSM60206", "GSM60215", "GSM60216" ], "type": "time", "id": "GDS1784_4" }, { "dataset_id": "GDS1784", "description": "6 h", "sample_id": [ "GSM60207", "GSM60208", "GSM60217", "GSM60218", "GSM60225", "GSM60226", "GSM60233", "GSM60234" ], "type": "time", "id": "GDS1784_5" }, { "dataset_id": "GDS1784", "description": "24 h", "sample_id": [ "GSM60209", "GSM60210", "GSM60219", "GSM60220", "GSM60227", "GSM60228", "GSM60235", "GSM60236" ], "type": "time", "id": "GDS1784_6" }, { "dataset_id": "GDS1784", "description": "48 h", "sample_id": [ "GSM60211", "GSM60212", "GSM60221", "GSM60222", "GSM60229", "GSM60230", "GSM60237", "GSM60238" ], "type": "time", "id": "GDS1784_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1784", "version": 1.0, "instances": "36", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1784.tab", "compression": "gz" } ], [ [ "GDS1785.tab" ], { "title": "pen3 mutant response to nonhost fungal pathogen", "description": "Analysis of pen3 mutants after inoculation with barley powdery mildew, Blumeria graminis f. sp hordei (B. g. hordei). pen3 mutations allows increased epidermal cell invasion by B. g. hordei. Results provide insight into the mechanisms underlying the lack of nonhost resistance in pen3 mutants.", "type": "Expression profiling by array", "pubmed_id": "16473969", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE3220", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1785", "description": "wild type", "sample_id": [ "GSM70995", "GSM70996", "GSM70997", "GSM70998", "GSM70999", "GSM71000", "GSM71001", "GSM71002", "GSM71003", "GSM71004", "GSM71005", "GSM71017" ], "type": "genotype/variation", "id": "GDS1785_1" }, { "dataset_id": "GDS1785", "description": "pen3", "sample_id": [ "GSM71006", "GSM71007", "GSM71008", "GSM71009", "GSM71010", "GSM71011", "GSM71012", "GSM71013", "GSM71014", "GSM71015", "GSM71016", "GSM71018" ], "type": "genotype/variation", "id": "GDS1785_2" }, { "dataset_id": "GDS1785", "description": "uninfected", "sample_id": [ "GSM71002", "GSM71003", "GSM71004", "GSM71005", "GSM71013", "GSM71014", "GSM71015", "GSM71016" ], "type": "infection", "id": "GDS1785_3" }, { "dataset_id": "GDS1785", "description": "host fungal pathogen", "sample_id": [ "GSM70998", "GSM70999", "GSM71000", "GSM71001", "GSM71010", "GSM71011", "GSM71012", "GSM71018" ], "type": "infection", "id": "GDS1785_4" }, { "dataset_id": "GDS1785", "description": "nonhost fungal pathogen", "sample_id": [ "GSM70995", "GSM70996", "GSM70997", "GSM71006", "GSM71007", "GSM71008", "GSM71009", "GSM71017" ], "type": "infection", "id": "GDS1785_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1785", "version": 1.0, "instances": "24", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1785.tab", "compression": "gz" } ], [ [ "GDS1786.tab" ], { "title": "Microarray-assisted positional cloning of TOM-1 and UNC-43", "description": "Analysis of tom-1 and unc-43 mutants. Many mutations found in screens are nonsense mutations which give rise to rapidly-degraded mRNAs, thus making them detectable by microarray. Results support the use of arrays to facilitate identification of mutations from genetic screens.", "type": "Expression profiling by array", "pubmed_id": "16103915", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2210", "order": "none", "update_date": "May 02 2006", "subsets": [ { "dataset_id": "GDS1786", "description": "wildtype", "sample_id": [ "GSM40308", "GSM40309", "GSM40310", "GSM40311" ], "type": "strain", "id": "GDS1786_1" }, { "dataset_id": "GDS1786", "description": "KP3293 tom-1(nu468) mutant", "sample_id": [ "GSM40306", "GSM40307" ], "type": "strain", "id": "GDS1786_2" }, { "dataset_id": "GDS1786", "description": "KP3365 unc-43(n1186) mutant", "sample_id": [ "GSM40312", "GSM40313", "GSM40314" ], "type": "strain", "id": "GDS1786_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS1786", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1786.tab", "compression": "gz" } ], [ [ "GDS1788.tab" ], { "title": "Protein tyrosine kinase Src R388A mutant rescue by imidazole in living cells: time course", "description": "Analysis of protein tyrosine kinase Src R388A mutant protein in living cells at 1 and 12 hours after chemical rescue with imidazole. Rapid and reversible activity stimulation is an advantage chemical rescue has over inducible transcriptional systems and temperature-sensitive mutants.", "type": "Expression profiling by array", "pubmed_id": "16513984", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4043", "order": "none", "update_date": "Mar 17 2006", "subsets": [ { "dataset_id": "GDS1788", "description": "0 h", "sample_id": [ "GSM92297", "GSM92525" ], "type": "time", "id": "GDS1788_1" }, { "dataset_id": "GDS1788", "description": "1 h", "sample_id": [ "GSM92459", "GSM92526" ], "type": "time", "id": "GDS1788_2" }, { "dataset_id": "GDS1788", "description": "12 h", "sample_id": [ "GSM92524", "GSM92527" ], "type": "time", "id": "GDS1788_3" }, { "dataset_id": "GDS1788", "description": "Src R388A Y527F", "sample_id": [ "GSM92297", "GSM92459", "GSM92524" ], "type": "cell line", "id": "GDS1788_4" }, { "dataset_id": "GDS1788", "description": "Src D386N Y527F", "sample_id": [ "GSM92525", "GSM92526", "GSM92527" ], "type": "cell line", "id": "GDS1788_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1788", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1788.tab", "compression": "gz" } ], [ [ "GDS1791.tab" ], { "title": "Wilms' tumor", "description": "Expression profiling of Wilms' tumor tissue after pre-operative chemotherapy. Stratagene Universal Reference RNA also examined. Results are part of a cross-platform evaluation and compared to data generated from Serial Analysis of Gene Expression.", "type": "Expression profiling by array", "pubmed_id": "15955238", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1158", "order": "none", "update_date": "Mar 17 2006", "subsets": [ { "dataset_id": "GDS1791", "description": "Stratagene Universal Reference RNA", "sample_id": [ "GSM19380", "GSM19381" ], "type": "other", "id": "GDS1791_1" }, { "dataset_id": "GDS1791", "description": "Wilms' tumor RNA", "sample_id": [ "GSM19378", "GSM19379" ], "type": "other", "id": "GDS1791_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1791", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1791.tab", "compression": "gz" } ], [ [ "GDS1792.tab" ], { "title": "Gastric tubular adenoma and carcinoma", "description": "Analysis of gastric tubular adenoma and carcinoma cells microdissected from formalin-fixed paraffin-embedded sections of gastric biopsies. Early lesions are small and detectable only with a microscope. Results indicate that routinely processed biopsy specimens may be useful in expression profiling.", "type": "Expression profiling by array", "pubmed_id": "15800983", "platform": "GPL1090", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "14080", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE1279", "order": "none", "update_date": "Mar 17 2006", "subsets": [ { "dataset_id": "GDS1792", "description": "adenoma", "sample_id": [ "GSM20672", "GSM20673" ], "type": "disease state", "id": "GDS1792_1" }, { "dataset_id": "GDS1792", "description": "carcinoma", "sample_id": [ "GSM20674", "GSM20675" ], "type": "disease state", "id": "GDS1792_2" } ], "taxid": "9606", "genes": 8456, "aggregation_function": "mean", "name": "GDS1792", "version": 1.0, "instances": "4", "variables": 8458, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1792.tab", "compression": "gz" } ], [ [ "GDS1793.tab" ], { "title": "Homeodomain interacting protein kinase 2 dominant-negative form effect on trigeminal ganglion", "description": "Analysis of the trigeminal ganglia of transgenics expressing a dominant-negative form of homeodomain interacting protein kinase 2 (HIPK2). HIPK2 is a downstream target of Brn-3.2, a class IV POU domain transcription factor that controls a developmental program regulating axon pathfinding.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2869", "order": "none", "update_date": "Jun 13 2006", "subsets": [ { "dataset_id": "GDS1793", "description": "wild-type", "sample_id": [ "GSM53317", "GSM53318", "GSM53319", "GSM53320" ], "type": "genotype/variation", "id": "GDS1793_1" }, { "dataset_id": "GDS1793", "description": "HIPK2 dominant-negative", "sample_id": [ "GSM53321", "GSM53322", "GSM53323", "GSM53324" ], "type": "genotype/variation", "id": "GDS1793_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1793", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1793.tab", "compression": "gz" } ], [ [ "GDS1794.tab" ], { "title": "Chronic stress effect on the amygdala and hippocampus", "description": "Analysis of the amygdalae (Amy) and hippocampi (Hipp) of animals subjected to chronic stress induced by daily handling sessions for 14 days. Studies indicate that chronic stress produce a response in Hipp that is opposite of that in Amy.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2870", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1794", "description": "cortex", "sample_id": [ "GSM53311", "GSM53312", "GSM53313", "GSM53314", "GSM53315", "GSM53316" ], "type": "tissue", "id": "GDS1794_1" }, { "dataset_id": "GDS1794", "description": "amygdala", "sample_id": [ "GSM53299", "GSM53300", "GSM53301", "GSM53305", "GSM53306", "GSM53307" ], "type": "tissue", "id": "GDS1794_2" }, { "dataset_id": "GDS1794", "description": "hippocampus", "sample_id": [ "GSM53302", "GSM53303", "GSM53304", "GSM53308", "GSM53309", "GSM53310" ], "type": "tissue", "id": "GDS1794_3" }, { "dataset_id": "GDS1794", "description": "control", "sample_id": [ "GSM53305", "GSM53306", "GSM53307", "GSM53308", "GSM53309", "GSM53310", "GSM53314", "GSM53315", "GSM53316" ], "type": "stress", "id": "GDS1794_4" }, { "dataset_id": "GDS1794", "description": "chronic stress", "sample_id": [ "GSM53299", "GSM53300", "GSM53301", "GSM53302", "GSM53303", "GSM53304", "GSM53311", "GSM53312", "GSM53313" ], "type": "stress", "id": "GDS1794_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1794", "version": 1.0, "instances": "18", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1794.tab", "compression": "gz" } ], [ [ "GDS1795.tab" ], { "title": "Traumatic brain injury: time course", "description": "Analysis of cortices and hippocampi of animals 4 and 24 hours after mild or severe traumatic brain injury (TBI). TBI induced by lateral fluid percussion. Gene expression in tissues ipsi- and contralateral to the injury examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "count", "reference_series": "GSE2871", "order": "none", "update_date": "Jun 09 2006", "subsets": [ { "dataset_id": "GDS1795", "description": "contralateral to injury", "sample_id": [ "GSM53252", "GSM53260", "GSM53261", "GSM53262", "GSM53263", "GSM53264", "GSM53265", "GSM53266", "GSM53267", "GSM53274", "GSM53276", "GSM53277", "GSM53278", "GSM53279", "GSM53280", "GSM53281", "GSM53282", "GSM53283", "GSM53292", "GSM53293", "GSM53294", "GSM53295", "GSM53296", "GSM53297", "GSM53298" ], "type": "other", "id": "GDS1795_1" }, { "dataset_id": "GDS1795", "description": "ipsilateral to injury", "sample_id": [ "GSM53253", "GSM53254", "GSM53255", "GSM53256", "GSM53257", "GSM53258", "GSM53259", "GSM53268", "GSM53269", "GSM53270", "GSM53271", "GSM53272", "GSM53273", "GSM53275", "GSM53284", "GSM53285", "GSM53286", "GSM53287", "GSM53288", "GSM53289", "GSM53290", "GSM53291" ], "type": "other", "id": "GDS1795_2" }, { "dataset_id": "GDS1795", "description": "cortex", "sample_id": [ "GSM53252", "GSM53253", "GSM53254", "GSM53255", "GSM53256", "GSM53257", "GSM53258", "GSM53259", "GSM53260", "GSM53261", "GSM53262", "GSM53263", "GSM53264", "GSM53265", "GSM53266", "GSM53267", "GSM53284", "GSM53285", "GSM53286", "GSM53287", "GSM53288", "GSM53289", "GSM53290", "GSM53291", "GSM53292", "GSM53293", "GSM53294", "GSM53295", "GSM53296", "GSM53297", "GSM53298" ], "type": "tissue", "id": "GDS1795_3" }, { "dataset_id": "GDS1795", "description": "hippocampus", "sample_id": [ "GSM53268", "GSM53269", "GSM53270", "GSM53271", "GSM53272", "GSM53273", "GSM53274", "GSM53275", "GSM53276", "GSM53277", "GSM53278", "GSM53279", "GSM53280", "GSM53281", "GSM53282", "GSM53283" ], "type": "tissue", "id": "GDS1795_4" }, { "dataset_id": "GDS1795", "description": "control", "sample_id": [ "GSM53253", "GSM53260", "GSM53261", "GSM53268", "GSM53269", "GSM53276", "GSM53277", "GSM53284", "GSM53285", "GSM53252", "GSM53292" ], "type": "agent", "id": "GDS1795_5" }, { "dataset_id": "GDS1795", "description": "sham", "sample_id": [ "GSM53254", "GSM53255", "GSM53262", "GSM53263", "GSM53270", "GSM53271", "GSM53278", "GSM53279", "GSM53286", "GSM53287", "GSM53293", "GSM53294" ], "type": "agent", "id": "GDS1795_6" }, { "dataset_id": "GDS1795", "description": "mild injury", "sample_id": [ "GSM53256", "GSM53257", "GSM53264", "GSM53265", "GSM53272", "GSM53273", "GSM53280", "GSM53281", "GSM53288", "GSM53289", "GSM53295", "GSM53296" ], "type": "agent", "id": "GDS1795_7" }, { "dataset_id": "GDS1795", "description": "severe injury", "sample_id": [ "GSM53258", "GSM53259", "GSM53266", "GSM53267", "GSM53274", "GSM53275", "GSM53282", "GSM53283", "GSM53290", "GSM53291", "GSM53297", "GSM53298" ], "type": "agent", "id": "GDS1795_8" }, { "dataset_id": "GDS1795", "description": "4 hours", "sample_id": [ "GSM53253", "GSM53254", "GSM53255", "GSM53256", "GSM53257", "GSM53258", "GSM53259", "GSM53260", "GSM53261", "GSM53262", "GSM53263", "GSM53264", "GSM53265", "GSM53266", "GSM53267", "GSM53268", "GSM53269", "GSM53270", "GSM53271", "GSM53272", "GSM53273", "GSM53274", "GSM53275", "GSM53276", "GSM53277", "GSM53278", "GSM53279", "GSM53280", "GSM53281", "GSM53282", "GSM53283" ], "type": "time", "id": "GDS1795_9" }, { "dataset_id": "GDS1795", "description": "24 hours", "sample_id": [ "GSM53252", "GSM53284", "GSM53285", "GSM53286", "GSM53287", "GSM53288", "GSM53289", "GSM53290", "GSM53291", "GSM53292", "GSM53293", "GSM53294", "GSM53295", "GSM53296", "GSM53297", "GSM53298" ], "type": "time", "id": "GDS1795_10" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1795", "version": 1.0, "instances": "47", "variables": 6080, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1795.tab", "compression": "gz" } ], [ [ "GDS1796.tab" ], { "title": "Prostacylin receptor agonist and indomethacin effect on interleukin-1 beta activated synovial fibroblasts", "description": "Analysis of interleukin-1 beta activated synovial fibroblasts following treatment with indomethacin, a non-steroidal anti-inflammatory drug, alone or in combination with iloprost, a prostacyclin (PGI) receptor agonist. Results provide insight into the role of PGI in rheumatoid arthritis.", "type": "Expression profiling by array", "pubmed_id": "16446378", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2676", "order": "none", "update_date": "Mar 20 2006", "subsets": [ { "dataset_id": "GDS1796", "description": "control", "sample_id": [ "GSM51670" ], "type": "agent", "id": "GDS1796_1" }, { "dataset_id": "GDS1796", "description": "IL-1beta", "sample_id": [ "GSM51671" ], "type": "agent", "id": "GDS1796_2" }, { "dataset_id": "GDS1796", "description": "IL-1beta, indomethacin", "sample_id": [ "GSM51672" ], "type": "agent", "id": "GDS1796_3" }, { "dataset_id": "GDS1796", "description": "IL-1beta, indomethacin, iloprost", "sample_id": [ "GSM51673" ], "type": "agent", "id": "GDS1796_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1796", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1796.tab", "compression": "gz" } ], [ [ "GDS1797.tab" ], { "title": "TCDD effect on regenerating fin: time course", "description": "Analysis of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposed caudal fins at various time points up to 5 days post amputation. TCDD prevents caudal fin regeneration. Results provide insight into the pathways required for fin regeneration and the mechanisms of TCDD toxicity.", "type": "Expression profiling by array", "pubmed_id": "16443690", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3667", "order": "none", "update_date": "Oct 12 2006", "subsets": [ { "dataset_id": "GDS1797", "description": "control", "sample_id": [ "GSM85187", "GSM85188", "GSM85189", "GSM85193", "GSM85194", "GSM85195", "GSM85199", "GSM85200", "GSM85201" ], "type": "agent", "id": "GDS1797_1" }, { "dataset_id": "GDS1797", "description": "TCDD", "sample_id": [ "GSM85190", "GSM85191", "GSM85192", "GSM85196", "GSM85197", "GSM85198", "GSM85202", "GSM85203", "GSM85204" ], "type": "agent", "id": "GDS1797_2" }, { "dataset_id": "GDS1797", "description": "1 d", "sample_id": [ "GSM85187", "GSM85188", "GSM85189", "GSM85190", "GSM85191", "GSM85192" ], "type": "time", "id": "GDS1797_3" }, { "dataset_id": "GDS1797", "description": "3 d", "sample_id": [ "GSM85193", "GSM85194", "GSM85195", "GSM85196", "GSM85197", "GSM85198" ], "type": "time", "id": "GDS1797_4" }, { "dataset_id": "GDS1797", "description": "5 d", "sample_id": [ "GSM85199", "GSM85200", "GSM85201", "GSM85202", "GSM85203", "GSM85204" ], "type": "time", "id": "GDS1797_5" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS1797", "version": 1.0, "instances": "18", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1797.tab", "compression": "gz" } ], [ [ "GDS1798.tab" ], { "title": "CBF3 and ABF3 overexpressing transgenic leaves tolerative response to drought", "description": "Analysis of transgenic leaves from plants constitutively expressing Arabidopsis CBF3 or ABF3 following exposure to drought. CBF3 and ABF3 function in distinct stress-response pathways. Results demonstrate ectopic expression of CBF3 or ABF3 enhances stress tolerance.", "type": "Expression profiling by array", "pubmed_id": "15834008", "platform": "GPL1829", "platform_organism": "Oryza sativa", "platform_technology_type": "spotted oligonucleotide", "feature_count": "60727", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE2211", "order": "none", "update_date": "May 02 2006", "subsets": [ { "dataset_id": "GDS1798", "description": "Ubi1 CBF3 transgenic", "sample_id": [ "GSM40315", "GSM40316", "GSM40317", "GSM40321", "GSM40322", "GSM40323" ], "type": "genotype/variation", "id": "GDS1798_1" }, { "dataset_id": "GDS1798", "description": "Ubi1 ABF3 transgenic", "sample_id": [ "GSM40318", "GSM40319", "GSM40320", "GSM40324", "GSM40325", "GSM40326" ], "type": "genotype/variation", "id": "GDS1798_2" }, { "dataset_id": "GDS1798", "description": "control", "sample_id": [ "GSM40315", "GSM40316", "GSM40317", "GSM40318", "GSM40319", "GSM40320" ], "type": "stress", "id": "GDS1798_3" }, { "dataset_id": "GDS1798", "description": "drought", "sample_id": [ "GSM40321", "GSM40322", "GSM40323", "GSM40324", "GSM40325", "GSM40326" ], "type": "stress", "id": "GDS1798_4" } ], "taxid": "4530", "genes": 59619, "aggregation_function": "mean", "name": "GDS1798", "version": 1.0, "instances": "12", "variables": 59622, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1798.tab", "compression": "gz" } ], [ [ "GDS1799.tab" ], { "title": "Potassium chloride depolarizing effect on cortical neurons", "description": "Expression profiling of cortical neurons depolarized by treatment with 25 mM potassium chloride for 4 hours. Cortical neurons obtained from 17-day-old embryos and grown for 14 days in vitro prior to treatment. Results identify genes that are differentially expressed upon depolarization.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL88", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1322", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4472", "order": "none", "update_date": "Mar 21 2006", "subsets": [ { "dataset_id": "GDS1799", "description": "control", "sample_id": [ "GSM100447", "GSM100448" ], "type": "agent", "id": "GDS1799_1" }, { "dataset_id": "GDS1799", "description": "KCl", "sample_id": [ "GSM100449", "GSM100450" ], "type": "agent", "id": "GDS1799_2" } ], "taxid": "10116", "genes": 800, "aggregation_function": "mean", "name": "GDS1799", "version": 1.0, "instances": "4", "variables": 802, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1799.tab", "compression": "gz" } ], [ [ "GDS18.tab" ], { "title": "Stationary phase time course (y12)", "description": "Analysis of stationary phase. Culture grown to OD600 0.3 after which samples collected at various time points up to 13 days. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL52", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 03 2003", "subsets": [ { "dataset_id": "GDS18", "description": "2 hour", "sample_id": [ "GSM842" ], "type": "time", "id": "GDS18_1" }, { "dataset_id": "GDS18", "description": "4 hour", "sample_id": [ "GSM843" ], "type": "time", "id": "GDS18_2" }, { "dataset_id": "GDS18", "description": "8 hour", "sample_id": [ "GSM844" ], "type": "time", "id": "GDS18_3" }, { "dataset_id": "GDS18", "description": "12 hour", "sample_id": [ "GSM845" ], "type": "time", "id": "GDS18_4" }, { "dataset_id": "GDS18", "description": "1 day", "sample_id": [ "GSM846" ], "type": "time", "id": "GDS18_5" }, { "dataset_id": "GDS18", "description": "2 day", "sample_id": [ "GSM847" ], "type": "time", "id": "GDS18_6" }, { "dataset_id": "GDS18", "description": "3 day", "sample_id": [ "GSM848" ], "type": "time", "id": "GDS18_7" }, { "dataset_id": "GDS18", "description": "5 day", "sample_id": [ "GSM849" ], "type": "time", "id": "GDS18_8" }, { "dataset_id": "GDS18", "description": "7 day", "sample_id": [ "GSM850" ], "type": "time", "id": "GDS18_9" }, { "dataset_id": "GDS18", "description": "13 day", "sample_id": [ "GSM851" ], "type": "time", "id": "GDS18_10" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS18", "version": 1.0, "instances": "10", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS18.tab", "compression": "gz" } ], [ [ "GDS1800.tab" ], { "title": "Sodium arsenate effect on Azucena and Bala varieties", "description": "Expression profiling of 1-week-old roots from varieties Azucena and Bala following treatment with 1 ppm sodium arsenate. Results provide insight into the molecular basis of arsenate tolerance exhibited by the Bala variety.", "type": "Expression profiling by array", "pubmed_id": "18453530", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4471", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1800", "description": "control", "sample_id": [ "GSM100439", "GSM100440", "GSM100443", "GSM100444" ], "type": "agent", "id": "GDS1800_1" }, { "dataset_id": "GDS1800", "description": "arsenate", "sample_id": [ "GSM100441", "GSM100442", "GSM100445", "GSM100446" ], "type": "agent", "id": "GDS1800_2" }, { "dataset_id": "GDS1800", "description": "Azucena", "sample_id": [ "GSM100439", "GSM100440", "GSM100441", "GSM100442" ], "type": "strain", "id": "GDS1800_3" }, { "dataset_id": "GDS1800", "description": "Bala", "sample_id": [ "GSM100443", "GSM100444", "GSM100445", "GSM100446" ], "type": "strain", "id": "GDS1800_4" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS1800", "version": 1.0, "instances": "8", "variables": 50380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1800.tab", "compression": "gz" } ], [ [ "GDS1801.tab" ], { "title": "DNA methyltransferase inhibitor 5-aza-2-deoxycytidine effect on RAS-transformed fibroblasts", "description": "Expression profiling of HRAS oncogene transformed fibroblasts after treatment with the DNA methyltransferase inhibitor 5-aza-2-deoxycytidine for 96 hours. Results provide insight into the role of DNA methylation in oncogenic signaling pathways.", "type": "Expression profiling by array", "pubmed_id": "16568090", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4427", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1801", "description": "control", "sample_id": [ "GSM99621", "GSM99622", "GSM99623" ], "type": "cell line", "id": "GDS1801_1" }, { "dataset_id": "GDS1801", "description": "HRAS transformed", "sample_id": [ "GSM99624", "GSM99625", "GSM99626" ], "type": "cell line", "id": "GDS1801_2" }, { "dataset_id": "GDS1801", "description": "control", "sample_id": [ "GSM99621", "GSM99624" ], "type": "agent", "id": "GDS1801_3" }, { "dataset_id": "GDS1801", "description": "5-aza-2-deoxycytidine", "sample_id": [ "GSM99622", "GSM99623", "GSM99625", "GSM99626" ], "type": "agent", "id": "GDS1801_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1801", "version": 1.0, "instances": "6", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1801.tab", "compression": "gz" } ], [ [ "GDS1802.tab" ], { "title": "Sodium butyrate effect on colonic epithelial cells: time course", "description": "Analysis of colonic epithelial cells treated with sodium butyrate. Gene expression examined at various time points up to 24 hours following treatment. Results provide insight into the mechanisms underlying the ability of sodium butyrate to induce cell growth arrest and differentiation.", "type": "Expression profiling by array", "pubmed_id": "16678170", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4410", "order": "ordered", "update_date": "Mar 21 2006", "subsets": [ { "dataset_id": "GDS1802", "description": "0 h", "sample_id": [ "GSM99411", "GSM99416" ], "type": "time", "id": "GDS1802_1" }, { "dataset_id": "GDS1802", "description": "6 h", "sample_id": [ "GSM99413", "GSM99417" ], "type": "time", "id": "GDS1802_2" }, { "dataset_id": "GDS1802", "description": "12 h", "sample_id": [ "GSM99414", "GSM99418" ], "type": "time", "id": "GDS1802_3" }, { "dataset_id": "GDS1802", "description": "24 h", "sample_id": [ "GSM99415", "GSM99419" ], "type": "time", "id": "GDS1802_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1802", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1802.tab", "compression": "gz" } ], [ [ "GDS1803.tab" ], { "title": "Age effect on hematopoietic stem cells", "description": "Analysis of highly purified long-term hematopoietic stem cells from young and old C57BL/6s at 2 to 3 months and 22 to 24 months of age, respectively. Results provide insight into the cellular and molecular changes underlying hematopoietic stem cell aging.", "type": "Expression profiling by array", "pubmed_id": "15967997", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4332", "order": "ordered", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS1803", "description": "2 - 3 mo", "sample_id": [ "GSM98881", "GSM98882", "GSM98883" ], "type": "age", "id": "GDS1803_1" }, { "dataset_id": "GDS1803", "description": "22 - 23 mo", "sample_id": [ "GSM98876", "GSM98877", "GSM98878", "GSM98879", "GSM98880" ], "type": "age", "id": "GDS1803_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1803", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1803.tab", "compression": "gz" } ], [ [ "GDS1804.tab" ], { "title": "Heat shock factor sigma32 overexpression: time course", "description": "Expression profiling of cells at various time points up to 10 minutes following induction by IPTG of alternative sigma factor, sigma32, from an inducible promoter. Sigma32 mediates the heat shock response. Results identify genes regulated by sigma32.", "type": "Expression profiling by array", "pubmed_id": "16818608", "platform": "GPL3500", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6400", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log2 ratio", "reference_series": "GSE4321", "order": "none", "update_date": "Oct 06 2006", "subsets": [ { "dataset_id": "GDS1804", "description": "0 m", "sample_id": [ "GSM98717", "GSM98722", "GSM98727" ], "type": "time", "id": "GDS1804_1" }, { "dataset_id": "GDS1804", "description": "2.5 m", "sample_id": [ "GSM98718", "GSM98723", "GSM98728" ], "type": "time", "id": "GDS1804_2" }, { "dataset_id": "GDS1804", "description": "5 m", "sample_id": [ "GSM98719", "GSM98724", "GSM98729" ], "type": "time", "id": "GDS1804_3" }, { "dataset_id": "GDS1804", "description": "10 m", "sample_id": [ "GSM98720", "GSM98725", "GSM98730", "GSM98732" ], "type": "time", "id": "GDS1804_4" }, { "dataset_id": "GDS1804", "description": "20 m", "sample_id": [ "GSM98721", "GSM98726", "GSM98731" ], "type": "time", "id": "GDS1804_5" }, { "dataset_id": "GDS1804", "description": "control", "sample_id": [ "GSM98717", "GSM98722", "GSM98727" ], "type": "agent", "id": "GDS1804_6" }, { "dataset_id": "GDS1804", "description": "IPTG", "sample_id": [ "GSM98718", "GSM98719", "GSM98720", "GSM98721", "GSM98723", "GSM98724", "GSM98725", "GSM98726", "GSM98728", "GSM98729", "GSM98730", "GSM98731", "GSM98732" ], "type": "agent", "id": "GDS1804_7" } ], "taxid": "562", "genes": 4441, "aggregation_function": "mean", "name": "GDS1804", "version": 1.0, "instances": "16", "variables": 4444, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1804.tab", "compression": "gz" } ], [ [ "GDS1805.tab" ], { "title": "Lactating mammary gland response to diets with varying amounts of fat: time course", "description": "Analysis of mammary glands from FVBs fed a diet with 8%, 16%, or 40% fat. Gene expression examined at pregnancy day 12 to lactation day 9. Results provide insight into whether multiple metabolic control points are involved in activating lipid and lactose synthesis at the onset of lactation.", "type": "Expression profiling by array", "pubmed_id": "17105756", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE4222", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1805", "description": "liver", "sample_id": [ "GSM96229", "GSM96230", "GSM96231" ], "type": "tissue", "id": "GDS1805_1" }, { "dataset_id": "GDS1805", "description": "mammary gland", "sample_id": [ "GSM96200", "GSM96201", "GSM96202", "GSM96203", "GSM96204", "GSM96205", "GSM96206", "GSM96207", "GSM96208", "GSM96209", "GSM96210", "GSM96211", "GSM96212", "GSM96213", "GSM96214", "GSM96215", "GSM96216", "GSM96217", "GSM96218", "GSM96219", "GSM96220", "GSM96221", "GSM96222", "GSM96223", "GSM96224", "GSM96225", "GSM96226", "GSM96227", "GSM96228" ], "type": "tissue", "id": "GDS1805_2" }, { "dataset_id": "GDS1805", "description": "pregnancy day 12", "sample_id": [ "GSM96217", "GSM96218", "GSM96219", "GSM96220" ], "type": "development stage", "id": "GDS1805_3" }, { "dataset_id": "GDS1805", "description": "preganancy day 17", "sample_id": [ "GSM96225", "GSM96226", "GSM96227", "GSM96228" ], "type": "development stage", "id": "GDS1805_4" }, { "dataset_id": "GDS1805", "description": "lactation day 1", "sample_id": [ "GSM96221", "GSM96222", "GSM96223", "GSM96224" ], "type": "development stage", "id": "GDS1805_5" }, { "dataset_id": "GDS1805", "description": "lactation day 2", "sample_id": [ "GSM96209", "GSM96210", "GSM96211", "GSM96212" ], "type": "development stage", "id": "GDS1805_6" }, { "dataset_id": "GDS1805", "description": "lactation day 9", "sample_id": [ "GSM96213", "GSM96214", "GSM96215", "GSM96216" ], "type": "development stage", "id": "GDS1805_7" }, { "dataset_id": "GDS1805", "description": "lactation day 10", "sample_id": [ "GSM96200", "GSM96201", "GSM96202", "GSM96203", "GSM96204", "GSM96205", "GSM96206", "GSM96207", "GSM96208", "GSM96229", "GSM96230", "GSM96231" ], "type": "development stage", "id": "GDS1805_8" }, { "dataset_id": "GDS1805", "description": "normal fat", "sample_id": [ "GSM96209", "GSM96210", "GSM96211", "GSM96212", "GSM96213", "GSM96214", "GSM96215", "GSM96216", "GSM96217", "GSM96218", "GSM96219", "GSM96220", "GSM96221", "GSM96222", "GSM96223", "GSM96224", "GSM96225", "GSM96226", "GSM96227", "GSM96228" ], "type": "dose", "id": "GDS1805_9" }, { "dataset_id": "GDS1805", "description": "8 percent fat", "sample_id": [ "GSM96229", "GSM96230", "GSM96231", "GSM96203", "GSM96204", "GSM96205" ], "type": "dose", "id": "GDS1805_10" }, { "dataset_id": "GDS1805", "description": "16 percent fat", "sample_id": [ "GSM96206", "GSM96207", "GSM96208" ], "type": "dose", "id": "GDS1805_11" }, { "dataset_id": "GDS1805", "description": "40 percent fat", "sample_id": [ "GSM96200", "GSM96201", "GSM96202" ], "type": "dose", "id": "GDS1805_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1805", "version": 1.0, "instances": "32", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1805.tab", "compression": "gz" } ], [ [ "GDS1806.tab" ], { "title": "Modeled microgravity effect on activated T lymphocytes", "description": "Analysis of activated T-cells subjected to modeled microgravity. The study seeks to identify microgravity sensitive genes involved in apoptosis and the immune response. Microgravity is an environment of little net gravitational force that is experienced in spaceflight and by free-falling objects.", "type": "Expression profiling by array", "pubmed_id": "16795038", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE4209", "order": "none", "update_date": "Oct 06 2006", "subsets": [ { "dataset_id": "GDS1806", "description": "normal gravity", "sample_id": [ "GSM96146", "GSM96148", "GSM96150" ], "type": "protocol", "id": "GDS1806_1" }, { "dataset_id": "GDS1806", "description": "modeled microgravity", "sample_id": [ "GSM96147", "GSM96149", "GSM96151" ], "type": "protocol", "id": "GDS1806_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1806", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1806.tab", "compression": "gz" } ], [ [ "GDS1807.tab" ], { "title": "Hypoxia effect on B lymphocyte cell line", "description": "Expression profiling of B lymphocyte P493-6 cells subjected to hypoxia. Cells incubated in 0.1% oxygen for 29 hours, the point of highest expression of hypoxia-inducible factor 1 (HIF-1). Results identify hypoxia responsive genes in P493-6 cells.", "type": "Expression profiling by array", "pubmed_id": "16517405", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4086", "order": "none", "update_date": "Mar 21 2006", "subsets": [ { "dataset_id": "GDS1807", "description": "normoxia", "sample_id": [ "GSM93568", "GSM93569" ], "type": "stress", "id": "GDS1807_1" }, { "dataset_id": "GDS1807", "description": "hypoxia", "sample_id": [ "GSM93566", "GSM93567" ], "type": "stress", "id": "GDS1807_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1807", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1807.tab", "compression": "gz" } ], [ [ "GDS1808.tab" ], { "title": "Candidate calorie restriction mimetic drugs effect on the liver", "description": "Analysis of livers of long-lived B6C3F1 animals fed a diet containing metformin, glipizide, rosiglitazone, or soy isoflavone extract. Results compared to hepatic gene expression profile produced by long-term caloric restriction. Caloric restriction extends the life span of laboratory animals.", "type": "Expression profiling by array", "pubmed_id": "16189280", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE2431", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1808", "description": "untreated", "sample_id": [ "GSM45690", "GSM45691", "GSM45692", "GSM45693", "GSM45694", "GSM45695", "GSM45696", "GSM45697", "GSM45706", "GSM45707", "GSM45708", "GSM45709" ], "type": "agent", "id": "GDS1808_1" }, { "dataset_id": "GDS1808", "description": "glipizide", "sample_id": [ "GSM45698", "GSM45699", "GSM45700", "GSM45701" ], "type": "agent", "id": "GDS1808_2" }, { "dataset_id": "GDS1808", "description": "metformin", "sample_id": [ "GSM45710", "GSM45711", "GSM45712", "GSM45713" ], "type": "agent", "id": "GDS1808_3" }, { "dataset_id": "GDS1808", "description": "glipizide and metformin", "sample_id": [ "GSM45702", "GSM45703", "GSM45704", "GSM45705" ], "type": "agent", "id": "GDS1808_4" }, { "dataset_id": "GDS1808", "description": "rosiglitazone", "sample_id": [ "GSM45714", "GSM45715", "GSM45716", "GSM45717" ], "type": "agent", "id": "GDS1808_5" }, { "dataset_id": "GDS1808", "description": "soy isoflavone extract", "sample_id": [ "GSM45718", "GSM45719", "GSM45720", "GSM45721" ], "type": "agent", "id": "GDS1808_6" }, { "dataset_id": "GDS1808", "description": "93 kcal per wk for 8 wk", "sample_id": [ "GSM45690", "GSM45691", "GSM45692", "GSM45693", "GSM45698", "GSM45699", "GSM45700", "GSM45701", "GSM45702", "GSM45703", "GSM45704", "GSM45705", "GSM45710", "GSM45711", "GSM45712", "GSM45713", "GSM45714", "GSM45715", "GSM45716", "GSM45717", "GSM45718", "GSM45719", "GSM45720", "GSM45721" ], "type": "protocol", "id": "GDS1808_7" }, { "dataset_id": "GDS1808", "description": "52.2 kcal per wk for 8 wk", "sample_id": [ "GSM45706", "GSM45707", "GSM45708", "GSM45709" ], "type": "protocol", "id": "GDS1808_8" }, { "dataset_id": "GDS1808", "description": "77 kcal for 2 wk, 52.2 kcal for 6 wk", "sample_id": [ "GSM45694", "GSM45695", "GSM45696", "GSM45697" ], "type": "protocol", "id": "GDS1808_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1808", "version": 1.0, "instances": "32", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1808.tab", "compression": "gz" } ], [ [ "GDS1809.tab" ], { "title": "Graded HoxA10 expression effect on Lin(-) Sca1(+) c-kit(+) bone marrow cells", "description": "Analysis of HoxA10 transgenic Lin(-) Sca1(+) c-kit(+) bone marrow cells following treatment with 0, 0.1 or 0.5 ug/ml doxycycline. In this model, doxycycline induces the expression of HoxA10 in a dose dependent manner. Results provide insight into the role of HoxA10 in early hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3861", "order": "ordered", "update_date": "Jan 03 2007", "subsets": [ { "dataset_id": "GDS1809", "description": "control", "sample_id": [ "GSM88334", "GSM88337" ], "type": "dose", "id": "GDS1809_1" }, { "dataset_id": "GDS1809", "description": "0.1 ug/ml", "sample_id": [ "GSM88335", "GSM88338" ], "type": "dose", "id": "GDS1809_2" }, { "dataset_id": "GDS1809", "description": "0.5 ug/ml", "sample_id": [ "GSM88336", "GSM88339" ], "type": "dose", "id": "GDS1809_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1809", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1809.tab", "compression": "gz" } ], [ [ "GDS181.tab" ], { "title": "Large-scale analysis of the human transcriptome (HG-U95A)", "description": "Gene expression profiles from a diverse array of tissues, organs, and cell lines, from the normal physiological state. Represents a preliminary description of the normal mammalian transcriptome.", "type": "Expression profiling by array", "pubmed_id": "11904358", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "84", "value_type": "count", "reference_series": "GSE96", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS181", "description": "retinoblastoma", "sample_id": [ "GSM2819" ], "type": "tissue", "id": "GDS181_1" }, { "dataset_id": "GDS181", "description": "cortex", "sample_id": [ "GSM2820" ], "type": "tissue", "id": "GDS181_2" }, { "dataset_id": "GDS181", "description": "lung", "sample_id": [ "GSM2822", "GSM2832" ], "type": "tissue", "id": "GDS181_3" }, { "dataset_id": "GDS181", "description": "testis", "sample_id": [ "GSM2823", "GSM2824" ], "type": "tissue", "id": "GDS181_4" }, { "dataset_id": "GDS181", "description": "thymus", "sample_id": [ "GSM2825", "GSM2826" ], "type": "tissue", "id": "GDS181_5" }, { "dataset_id": "GDS181", "description": "heart", "sample_id": [ "GSM2829", "GSM2856" ], "type": "tissue", "id": "GDS181_6" }, { "dataset_id": "GDS181", "description": "kidney", "sample_id": [ "GSM2830", "GSM2843", "GSM2871" ], "type": "tissue", "id": "GDS181_7" }, { "dataset_id": "GDS181", "description": "liver", "sample_id": [ "GSM2831", "GSM2844" ], "type": "tissue", "id": "GDS181_8" }, { "dataset_id": "GDS181", "description": "placenta", "sample_id": [ "GSM2833", "GSM2846" ], "type": "tissue", "id": "GDS181_9" }, { "dataset_id": "GDS181", "description": "spleen", "sample_id": [ "GSM2835", "GSM2858" ], "type": "tissue", "id": "GDS181_10" }, { "dataset_id": "GDS181", "description": "thyroid", "sample_id": [ "GSM2836", "GSM2848" ], "type": "tissue", "id": "GDS181_11" }, { "dataset_id": "GDS181", "description": "whole brain", "sample_id": [ "GSM2837", "GSM2828" ], "type": "tissue", "id": "GDS181_12" }, { "dataset_id": "GDS181", "description": "THY-", "sample_id": [ "GSM2839", "GSM2841" ], "type": "tissue", "id": "GDS181_13" }, { "dataset_id": "GDS181", "description": "adrenal gland", "sample_id": [ "GSM2827", "GSM2842" ], "type": "tissue", "id": "GDS181_14" }, { "dataset_id": "GDS181", "description": "pancreas", "sample_id": [ "GSM2845", "GSM2872" ], "type": "tissue", "id": "GDS181_15" }, { "dataset_id": "GDS181", "description": "salivary gland", "sample_id": [ "GSM2847", "GSM2834" ], "type": "tissue", "id": "GDS181_16" }, { "dataset_id": "GDS181", "description": "cerebellum", "sample_id": [ "GSM2849", "GSM2850" ], "type": "tissue", "id": "GDS181_17" }, { "dataset_id": "GDS181", "description": "uterus", "sample_id": [ "GSM2853", "GSM2838" ], "type": "tissue", "id": "GDS181_18" }, { "dataset_id": "GDS181", "description": "spinal cord", "sample_id": [ "GSM2855", "GSM2852" ], "type": "tissue", "id": "GDS181_19" }, { "dataset_id": "GDS181", "description": "THY+", "sample_id": [ "GSM2857", "GSM2840" ], "type": "tissue", "id": "GDS181_20" }, { "dataset_id": "GDS181", "description": "prostate cancer", "sample_id": [ "GSM2861", "GSM2863", "GSM2859", "GSM2862", "GSM2860" ], "type": "tissue", "id": "GDS181_21" }, { "dataset_id": "GDS181", "description": "prostate", "sample_id": [ "GSM2865", "GSM2864", "GSM2866" ], "type": "tissue", "id": "GDS181_22" }, { "dataset_id": "GDS181", "description": "OVR278S", "sample_id": [ "GSM2868", "GSM2869" ], "type": "tissue", "id": "GDS181_23" }, { "dataset_id": "GDS181", "description": "ovary-pool", "sample_id": [ "GSM2870", "GSM2851", "GSM2867" ], "type": "tissue", "id": "GDS181_24" }, { "dataset_id": "GDS181", "description": "trachea", "sample_id": [ "GSM2873", "GSM2854" ], "type": "tissue", "id": "GDS181_25" }, { "dataset_id": "GDS181", "description": "amygdala", "sample_id": [ "GSM2874", "GSM2884" ], "type": "tissue", "id": "GDS181_26" }, { "dataset_id": "GDS181", "description": "Burkitt's Daudi", "sample_id": [ "GSM2875", "GSM2890" ], "type": "tissue", "id": "GDS181_27" }, { "dataset_id": "GDS181", "description": "HL60", "sample_id": [ "GSM2877", "GSM2892", "GSM2902" ], "type": "tissue", "id": "GDS181_28" }, { "dataset_id": "GDS181", "description": "Lymphoblastic molt-4", "sample_id": [ "GSM2878", "GSM2901" ], "type": "tissue", "id": "GDS181_29" }, { "dataset_id": "GDS181", "description": "pituitary gland", "sample_id": [ "GSM2879", "GSM2898" ], "type": "tissue", "id": "GDS181_30" }, { "dataset_id": "GDS181", "description": "thalamus", "sample_id": [ "GSM2881", "GSM2897" ], "type": "tissue", "id": "GDS181_31" }, { "dataset_id": "GDS181", "description": "fetal liver", "sample_id": [ "GSM2882", "GSM2894" ], "type": "tissue", "id": "GDS181_32" }, { "dataset_id": "GDS181", "description": "fetal brain", "sample_id": [ "GSM2883", "GSM2895" ], "type": "tissue", "id": "GDS181_33" }, { "dataset_id": "GDS181", "description": "caudate nucleus", "sample_id": [ "GSM2885", "GSM2886" ], "type": "tissue", "id": "GDS181_34" }, { "dataset_id": "GDS181", "description": "corpus callosum", "sample_id": [ "GSM2887", "GSM2896" ], "type": "tissue", "id": "GDS181_35" }, { "dataset_id": "GDS181", "description": "DRG", "sample_id": [ "GSM2889", "GSM2888" ], "type": "tissue", "id": "GDS181_36" }, { "dataset_id": "GDS181", "description": "myelogenous k562", "sample_id": [ "GSM2891", "GSM2876" ], "type": "tissue", "id": "GDS181_37" }, { "dataset_id": "GDS181", "description": "Burkitt's Raji", "sample_id": [ "GSM2893", "GSM2880" ], "type": "tissue", "id": "GDS181_38" }, { "dataset_id": "GDS181", "description": "HUVEC", "sample_id": [ "GSM2900", "GSM2821", "GSM2903" ], "type": "tissue", "id": "GDS181_39" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS181", "version": 1.0, "instances": "84", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS181.tab", "compression": "gz" } ], [ [ "GDS1810.tab" ], { "title": "Surgical model of acute lymphedema induction", "description": "Expression profiling of lymphedematous tail skin. Lymphedema is the swelling of subcutaneous tissue due to faulty lymphatic drainage. It is a common consequence of surgical and radiation treatment of certain types of cancers. Lymph vessels were surgically blocked to induce acute lymphedema.", "type": "Expression profiling by array", "pubmed_id": "16834456", "platform": "GPL3506", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "42624", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log2 ratio", "reference_series": "GSE4333", "order": "none", "update_date": "Jan 03 2007", "subsets": [ { "dataset_id": "GDS1810", "description": "normal", "sample_id": [ "GSM98884", "GSM98885", "GSM98886", "GSM98890", "GSM98891", "GSM98892" ], "type": "disease state", "id": "GDS1810_1" }, { "dataset_id": "GDS1810", "description": "lymphedema", "sample_id": [ "GSM98887", "GSM98888", "GSM98889" ], "type": "disease state", "id": "GDS1810_2" }, { "dataset_id": "GDS1810", "description": "unoperated", "sample_id": [ "GSM98884", "GSM98885", "GSM98886" ], "type": "protocol", "id": "GDS1810_3" }, { "dataset_id": "GDS1810", "description": "surgical sham", "sample_id": [ "GSM98890", "GSM98891", "GSM98892" ], "type": "protocol", "id": "GDS1810_4" }, { "dataset_id": "GDS1810", "description": "surgical blockage", "sample_id": [ "GSM98887", "GSM98888", "GSM98889" ], "type": "protocol", "id": "GDS1810_5" } ], "taxid": "10090", "genes": 30435, "aggregation_function": "mean", "name": "GDS1810", "version": 1.0, "instances": "9", "variables": 30438, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1810.tab", "compression": "gz" } ], [ [ "GDS1812.tab" ], { "title": "HPV16 integration and episomal loss effect on cervical keratinocytes", "description": "Analysis of high-risk human papillomavirus (HRHPV) HPV16-containing cervical keratinocyte W12 cells selected for integrated HPV16. Results show that HRHPV integration and episome loss are key events in cervical neoplastic progression.", "type": "Expression profiling by array", "pubmed_id": "16505361", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4289", "order": "none", "update_date": "Jan 04 2007", "subsets": [ { "dataset_id": "GDS1812", "description": "HPV16 episome only", "sample_id": [ "GSM97787", "GSM97788" ], "type": "disease state", "id": "GDS1812_1" }, { "dataset_id": "GDS1812", "description": "episome and integrated HPV16", "sample_id": [ "GSM97789", "GSM97790" ], "type": "disease state", "id": "GDS1812_2" }, { "dataset_id": "GDS1812", "description": "integrated HPV16 only", "sample_id": [ "GSM97791", "GSM97792" ], "type": "disease state", "id": "GDS1812_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1812", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1812.tab", "compression": "gz" } ], [ [ "GDS1813.tab" ], { "title": "Glial brain tumors", "description": "Analysis of 50 glial brain tumors of various histogenesis. Results provide insight into the molecular mechanisms underlying gliomagenesis and define biological pathway maps associated with gliomagenesis as well as distinct glioma subtypes.", "type": "Expression profiling by array", "pubmed_id": [ "16204036", "16365179" ], "platform": "GPL1833", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "41472", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "53", "value_type": "log2 ratio", "reference_series": "GSE2223", "order": "none", "update_date": "Apr 27 2006", "subsets": [ { "dataset_id": "GDS1813", "description": "normal", "sample_id": [ "GSM40663", "GSM40667", "GSM40675", "GSM40703" ], "type": "disease state", "id": "GDS1813_1" }, { "dataset_id": "GDS1813", "description": "oligodendroglioma", "sample_id": [ "GSM40660", "GSM40668", "GSM40678", "GSM40679", "GSM40686", "GSM40687", "GSM40691", "GSM40699" ], "type": "disease state", "id": "GDS1813_2" }, { "dataset_id": "GDS1813", "description": "anaplastic oligoastrocytoma", "sample_id": [ "GSM40664", "GSM40682", "GSM40688", "GSM40702", "GSM40706", "GSM40711" ], "type": "disease state", "id": "GDS1813_3" }, { "dataset_id": "GDS1813", "description": "glioblastoma", "sample_id": [ "GSM40661", "GSM40662", "GSM40666", "GSM40669", "GSM40670", "GSM40671", "GSM40672", "GSM40673", "GSM40674", "GSM40676", "GSM40680", "GSM40681", "GSM40683", "GSM40684", "GSM40685", "GSM40689", "GSM40690", "GSM40692", "GSM40693", "GSM40694", "GSM40695", "GSM40696", "GSM40697", "GSM40704", "GSM40705", "GSM40707", "GSM40708", "GSM40709", "GSM40712", "GSM40713" ], "type": "disease state", "id": "GDS1813_4" }, { "dataset_id": "GDS1813", "description": "astrocytic tumor", "sample_id": [ "GSM40701", "GSM40698", "GSM40665", "GSM40677" ], "type": "disease state", "id": "GDS1813_5" }, { "dataset_id": "GDS1813", "description": "glioneural neoplasm", "sample_id": [ "GSM40710" ], "type": "disease state", "id": "GDS1813_6" } ], "taxid": "9606", "genes": 34280, "aggregation_function": "mean", "name": "GDS1813", "version": 1.0, "instances": "53", "variables": 34282, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1813.tab", "compression": "gz" } ], [ [ "GDS1815.tab" ], { "title": "High-grade gliomas (HG-U133A)", "description": "Analysis of high-grade glioma (HGGs) samples from cases of WHO grade III and IV astrocytomas. Results classify HGGs into molecular subclasses with prognostic value that predict survival and disease progression. The molecular subclasses resemble key stages of neurogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "16530701", "20068170" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "100", "value_type": "count", "reference_series": "GSE4271", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1815", "description": "WHO grade III", "sample_id": [ "GSM97012", "GSM97015", "GSM97016", "GSM97017", "GSM97019", "GSM97020", "GSM97022", "GSM97025", "GSM97026", "GSM97027", "GSM97030", "GSM97033", "GSM97034", "GSM97035", "GSM97036", "GSM97038", "GSM97039", "GSM97045", "GSM97046", "GSM97047", "GSM97023", "GSM97013", "GSM97029", "GSM97043" ], "type": "disease state", "id": "GDS1815_1" }, { "dataset_id": "GDS1815", "description": "WHO grade IV", "sample_id": [ "GSM96956", "GSM96957", "GSM96960", "GSM96968", "GSM96971", "GSM96975", "GSM96986", "GSM96998", "GSM96999", "GSM97001", "GSM97003", "GSM97005", "GSM97006", "GSM97021", "GSM97024", "GSM97028", "GSM97031", "GSM97032", "GSM97044", "GSM97049" ], "type": "disease state", "id": "GDS1815_2" }, { "dataset_id": "GDS1815", "description": "WHO grade IV without necrosis", "sample_id": [ "GSM97014", "GSM97018", "GSM97037", "GSM97042", "GSM97040", "GSM97041" ], "type": "disease state", "id": "GDS1815_3" }, { "dataset_id": "GDS1815", "description": "WHO grade IV with necrosis", "sample_id": [ "GSM96954", "GSM96962", "GSM96976", "GSM96977", "GSM96979", "GSM96984", "GSM96995", "GSM96997", "GSM97007", "GSM97009", "GSM97010", "GSM96959", "GSM96966", "GSM96969", "GSM96970", "GSM96972", "GSM96973", "GSM96974", "GSM96978", "GSM96983", "GSM96985", "GSM96994", "GSM96996", "GSM97002", "GSM96953", "GSM96955", "GSM96963", "GSM96990", "GSM96991", "GSM96951", "GSM96952", "GSM96958", "GSM96961", "GSM96964", "GSM96980", "GSM96982", "GSM96987", "GSM96992", "GSM97004", "GSM97008", "GSM96950", "GSM96965", "GSM96967", "GSM96981", "GSM96988", "GSM96989", "GSM96993", "GSM97000", "GSM97011", "GSM97048" ], "type": "disease state", "id": "GDS1815_4" }, { "dataset_id": "GDS1815", "description": "primary", "sample_id": [ "GSM96954", "GSM96962", "GSM96976", "GSM96977", "GSM96979", "GSM96984", "GSM96995", "GSM96997", "GSM97007", "GSM97009", "GSM97010", "GSM96959", "GSM96966", "GSM96969", "GSM96970", "GSM96972", "GSM96973", "GSM96974", "GSM96978", "GSM96983", "GSM96985", "GSM96994", "GSM96996", "GSM97002", "GSM97012", "GSM97015", "GSM97016", "GSM97017", "GSM97019", "GSM97020", "GSM97022", "GSM97025", "GSM97026", "GSM97027", "GSM97030", "GSM97033", "GSM97034", "GSM97035", "GSM97036", "GSM97038", "GSM97039", "GSM97045", "GSM97046", "GSM97047", "GSM96953", "GSM96955", "GSM96963", "GSM96990", "GSM96991", "GSM97014", "GSM97018", "GSM97037", "GSM97042", "GSM97023", "GSM96951", "GSM96952", "GSM96958", "GSM96961", "GSM96964", "GSM96980", "GSM96982", "GSM96987", "GSM96992", "GSM97004", "GSM97008", "GSM96950", "GSM96965", "GSM96967", "GSM96981", "GSM96988", "GSM96989", "GSM96993", "GSM97000", "GSM97011", "GSM97040", "GSM97041", "GSM97048" ], "type": "specimen", "id": "GDS1815_5" }, { "dataset_id": "GDS1815", "description": "recurrent", "sample_id": [ "GSM97013", "GSM97029", "GSM97043", "GSM96956", "GSM96957", "GSM96960", "GSM96968", "GSM96971", "GSM96975", "GSM96986", "GSM96998", "GSM96999", "GSM97001", "GSM97003", "GSM97005", "GSM97006", "GSM97021", "GSM97024", "GSM97028", "GSM97031", "GSM97032", "GSM97044", "GSM97049" ], "type": "specimen", "id": "GDS1815_6" }, { "dataset_id": "GDS1815", "description": "proneural", "sample_id": [ "GSM97012", "GSM97015", "GSM97016", "GSM97017", "GSM97019", "GSM97020", "GSM97022", "GSM97025", "GSM97026", "GSM97027", "GSM97030", "GSM97033", "GSM97034", "GSM97035", "GSM97036", "GSM97038", "GSM97039", "GSM97045", "GSM97046", "GSM97047", "GSM96953", "GSM96955", "GSM96963", "GSM96990", "GSM96991", "GSM97014", "GSM97018", "GSM97037", "GSM97042", "GSM97048", "GSM97029", "GSM97043", "GSM96956", "GSM97024", "GSM97032", "GSM97044", "GSM97049" ], "type": "cell type", "id": "GDS1815_7" }, { "dataset_id": "GDS1815", "description": "proliferative", "sample_id": [ "GSM96954", "GSM96962", "GSM96976", "GSM96977", "GSM96979", "GSM96984", "GSM96995", "GSM96997", "GSM97007", "GSM97009", "GSM97010", "GSM96959", "GSM96966", "GSM96969", "GSM96970", "GSM96972", "GSM96973", "GSM96974", "GSM96978", "GSM96983", "GSM96985", "GSM96994", "GSM96996", "GSM97002", "GSM96968", "GSM96971", "GSM96986", "GSM97003" ], "type": "cell type", "id": "GDS1815_8" }, { "dataset_id": "GDS1815", "description": "mesenchymal", "sample_id": [ "GSM97023", "GSM96951", "GSM96952", "GSM96958", "GSM96961", "GSM96964", "GSM96980", "GSM96982", "GSM96987", "GSM96992", "GSM97004", "GSM97008", "GSM96950", "GSM96965", "GSM96967", "GSM96981", "GSM96988", "GSM96989", "GSM96993", "GSM97000", "GSM97011", "GSM97040", "GSM97041", "GSM97013", "GSM96957", "GSM96960", "GSM96975", "GSM96998", "GSM96999", "GSM97001", "GSM97005", "GSM97006", "GSM97021", "GSM97028", "GSM97031" ], "type": "cell type", "id": "GDS1815_9" }, { "dataset_id": "GDS1815", "description": "less than 52 wk survival", "sample_id": [ "GSM97011", "GSM96996", "GSM96984", "GSM97047", "GSM96979", "GSM96983", "GSM96967", "GSM96966", "GSM96987", "GSM96955", "GSM96994", "GSM97007", "GSM97045", "GSM97038", "GSM97023", "GSM96997" ], "type": "other", "id": "GDS1815_10" }, { "dataset_id": "GDS1815", "description": "52 to 103 wk survival", "sample_id": [ "GSM96973", "GSM97008", "GSM97040", "GSM97041", "GSM96969", "GSM96982", "GSM97009", "GSM96988", "GSM96970", "GSM96964", "GSM96962", "GSM96990", "GSM97000", "GSM97004", "GSM96954", "GSM97010", "GSM97037", "GSM96981", "GSM96995", "GSM97025", "GSM97030", "GSM97002", "GSM96977", "GSM96976", "GSM96965" ], "type": "other", "id": "GDS1815_11" }, { "dataset_id": "GDS1815", "description": "104 to 154 wk survival", "sample_id": [ "GSM97027", "GSM96989", "GSM97034", "GSM96985", "GSM97033", "GSM96974", "GSM96993", "GSM96980", "GSM96950", "GSM97018", "GSM97048", "GSM96991", "GSM96992" ], "type": "other", "id": "GDS1815_12" }, { "dataset_id": "GDS1815", "description": "155 to 209 wk survival", "sample_id": [ "GSM97026", "GSM97020", "GSM96958", "GSM96963" ], "type": "other", "id": "GDS1815_13" }, { "dataset_id": "GDS1815", "description": "more than 209 wk survival", "sample_id": [ "GSM96972", "GSM96953", "GSM96951", "GSM96959", "GSM96978", "GSM97035", "GSM97014", "GSM97017", "GSM96961", "GSM96952", "GSM97019", "GSM97042", "GSM97012", "GSM97022", "GSM97046", "GSM97039", "GSM97036", "GSM97015", "GSM97016" ], "type": "other", "id": "GDS1815_14" }, { "dataset_id": "GDS1815", "description": "unknown", "sample_id": [ "GSM97013", "GSM97029", "GSM97043", "GSM96956", "GSM96957", "GSM96960", "GSM96968", "GSM96971", "GSM96975", "GSM96986", "GSM96998", "GSM96999", "GSM97001", "GSM97003", "GSM97005", "GSM97006", "GSM97021", "GSM97024", "GSM97028", "GSM97031", "GSM97032", "GSM97044", "GSM97049" ], "type": "other", "id": "GDS1815_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1815", "version": 1.0, "instances": "100", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1815.tab", "compression": "gz" } ], [ [ "GDS1816.tab" ], { "title": "High-grade gliomas (HG-U133B)", "description": "Analysis of high-grade glioma (HGGs) samples from cases of WHO grade III and IV astrocytomas. Results classify HGGs into molecular subclasses with prognostic value that predict survival and disease progression. The molecular subclasses resemble key stages of neurogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "16530701", "20068170" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "100", "value_type": "count", "reference_series": "GSE4271", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1816", "description": "WHO grade III", "sample_id": [ "GSM97112", "GSM97115", "GSM97116", "GSM97117", "GSM97119", "GSM97120", "GSM97122", "GSM97125", "GSM97126", "GSM97127", "GSM97130", "GSM97133", "GSM97134", "GSM97135", "GSM97136", "GSM97138", "GSM97139", "GSM97145", "GSM97146", "GSM97147", "GSM97123", "GSM97113", "GSM97129", "GSM97143" ], "type": "disease state", "id": "GDS1816_1" }, { "dataset_id": "GDS1816", "description": "WHO grade IV", "sample_id": [ "GSM97056", "GSM97057", "GSM97060", "GSM97068", "GSM97071", "GSM97075", "GSM97086", "GSM97098", "GSM97099", "GSM97101", "GSM97103", "GSM97105", "GSM97106", "GSM97121", "GSM97124", "GSM97128", "GSM97131", "GSM97132", "GSM97144", "GSM97149" ], "type": "disease state", "id": "GDS1816_2" }, { "dataset_id": "GDS1816", "description": "WHO grade IV without necrosis", "sample_id": [ "GSM97114", "GSM97118", "GSM97137", "GSM97142", "GSM97140", "GSM97141" ], "type": "disease state", "id": "GDS1816_3" }, { "dataset_id": "GDS1816", "description": "WHO grade IV with necrosis", "sample_id": [ "GSM97054", "GSM97062", "GSM97076", "GSM97077", "GSM97079", "GSM97084", "GSM97095", "GSM97097", "GSM97107", "GSM97109", "GSM97110", "GSM97059", "GSM97066", "GSM97069", "GSM97070", "GSM97072", "GSM97073", "GSM97074", "GSM97078", "GSM97083", "GSM97085", "GSM97094", "GSM97096", "GSM97102", "GSM97053", "GSM97055", "GSM97063", "GSM97090", "GSM97091", "GSM97051", "GSM97052", "GSM97058", "GSM97061", "GSM97064", "GSM97080", 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"GSM97063", "GSM97090", "GSM97091", "GSM97114", "GSM97118", "GSM97137", "GSM97142", "GSM97148", "GSM97129", "GSM97143", "GSM97056", "GSM97124", "GSM97132", "GSM97144", "GSM97149" ], "type": "cell type", "id": "GDS1816_7" }, { "dataset_id": "GDS1816", "description": "proliferative", "sample_id": [ "GSM97054", "GSM97062", "GSM97076", "GSM97077", "GSM97079", "GSM97084", "GSM97095", "GSM97097", "GSM97107", "GSM97109", "GSM97110", "GSM97059", "GSM97066", "GSM97069", "GSM97070", "GSM97072", "GSM97073", "GSM97074", "GSM97078", "GSM97083", "GSM97085", "GSM97094", "GSM97096", "GSM97102", "GSM97068", "GSM97071", "GSM97086", "GSM97103" ], "type": "cell type", "id": "GDS1816_8" }, { "dataset_id": "GDS1816", "description": "mesenchymal", "sample_id": [ "GSM97123", "GSM97051", "GSM97052", "GSM97058", "GSM97061", "GSM97064", "GSM97080", "GSM97082", "GSM97087", "GSM97092", "GSM97104", "GSM97108", "GSM97050", "GSM97065", "GSM97067", "GSM97081", "GSM97088", "GSM97089", "GSM97093", "GSM97100", "GSM97111", "GSM97140", "GSM97141", "GSM97113", "GSM97057", "GSM97060", "GSM97075", "GSM97098", "GSM97099", "GSM97101", "GSM97105", "GSM97106", "GSM97121", "GSM97128", "GSM97131" ], "type": "cell type", "id": "GDS1816_9" }, { "dataset_id": "GDS1816", "description": "less than 52 wk survival", "sample_id": [ "GSM97111", "GSM97096", "GSM97084", "GSM97147", "GSM97079", "GSM97083", "GSM97067", "GSM97066", "GSM97087", "GSM97055", "GSM97094", "GSM97107", "GSM97145", "GSM97138", "GSM97123", "GSM97097" ], "type": "other", "id": "GDS1816_10" }, { "dataset_id": "GDS1816", "description": "52 to 103 wk survival", "sample_id": [ "GSM97073", "GSM97108", "GSM97140", "GSM97141", "GSM97069", "GSM97082", "GSM97109", "GSM97088", "GSM97070", "GSM97064", "GSM97062", "GSM97090", "GSM97100", "GSM97104", "GSM97054", "GSM97110", "GSM97137", "GSM97081", "GSM97095", "GSM97125", "GSM97130", "GSM97102", "GSM97077", "GSM97076", "GSM97065", "GSM97127" ], "type": "other", "id": "GDS1816_11" }, { "dataset_id": "GDS1816", "description": "104 to 154 wk survival", "sample_id": [ "GSM97089", "GSM97134", "GSM97085", "GSM97133", "GSM97074", "GSM97093", "GSM97080", "GSM97050", "GSM97118", "GSM97148", "GSM97091", "GSM97092" ], "type": "other", "id": "GDS1816_12" }, { "dataset_id": "GDS1816", "description": "155 to 209 wk survival", "sample_id": [ "GSM97126", "GSM97120", "GSM97058", "GSM97063" ], "type": "other", "id": "GDS1816_13" }, { "dataset_id": "GDS1816", "description": "more than 209 wk survival", "sample_id": [ "GSM97072", "GSM97053", "GSM97051", "GSM97059", "GSM97078", "GSM97135", "GSM97114", "GSM97117", "GSM97061", "GSM97052", "GSM97119", "GSM97142", "GSM97112", "GSM97122", "GSM97146", "GSM97139", "GSM97136", "GSM97115", "GSM97116" ], "type": "other", "id": "GDS1816_14" }, { "dataset_id": "GDS1816", "description": "unknown", "sample_id": [ "GSM97113", "GSM97129", "GSM97143", "GSM97056", "GSM97057", "GSM97060", "GSM97068", "GSM97071", "GSM97075", "GSM97086", "GSM97098", "GSM97099", "GSM97101", "GSM97103", "GSM97105", "GSM97106", "GSM97121", "GSM97124", "GSM97128", "GSM97131", "GSM97132", "GSM97144", "GSM97149" ], "type": "other", "id": "GDS1816_15" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1816", "version": 1.0, "instances": "100", "variables": 16470, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1816.tab", "compression": "gz" } ], [ [ "GDS182.tab" ], { "title": "Large-scale analysis of the mouse transcriptome (MG-U74A)", "description": "Gene expression profiles from a diverse array of tissues, organs, and cell lines, from the normal physiological state. Represents a preliminary description of the normal mammalian transcriptome.", "type": "Expression profiling by array", "pubmed_id": "11904358", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "90", "value_type": "count", "reference_series": "GSE97", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS182", "description": "small intestine", "sample_id": [ "GSM2904", "GSM2905" ], "type": "tissue", "id": "GDS182_1" }, { "dataset_id": "GDS182", "description": "stomach", "sample_id": [ "GSM2906", "GSM2907" ], "type": "tissue", "id": "GDS182_2" }, { "dataset_id": "GDS182", "description": "heart", "sample_id": [ "GSM2909", "GSM2916" ], "type": "tissue", "id": "GDS182_3" }, { "dataset_id": "GDS182", "description": "bone", "sample_id": [ "GSM2910", "GSM2911" ], "type": "tissue", "id": "GDS182_4" }, { "dataset_id": "GDS182", "description": "cerebellum", "sample_id": [ "GSM2912", "GSM2913" ], "type": "tissue", "id": "GDS182_5" }, { "dataset_id": "GDS182", "description": "cortex frontal", "sample_id": [ "GSM2914", "GSM2981" ], "type": "tissue", "id": "GDS182_6" }, { "dataset_id": "GDS182", "description": "hypothalamus", "sample_id": [ "GSM2915", "GSM2908" ], "type": "tissue", "id": "GDS182_7" }, { "dataset_id": "GDS182", "description": "spinal cord, lower", "sample_id": [ "GSM2917", "GSM2918" ], "type": "tissue", "id": "GDS182_8" }, { "dataset_id": "GDS182", "description": "spinal cord, upper", "sample_id": [ "GSM2919", "GSM2920" ], "type": "tissue", "id": "GDS182_9" }, { "dataset_id": "GDS182", "description": "brown fat", "sample_id": [ "GSM2922", "GSM2921" ], "type": "tissue", "id": "GDS182_10" }, { "dataset_id": "GDS182", "description": "striatum", "sample_id": [ "GSM2923", "GSM2924" ], "type": "tissue", "id": "GDS182_11" }, { "dataset_id": "GDS182", "description": "olfactory bulb", "sample_id": [ "GSM2925", "GSM2926" ], "type": "tissue", "id": "GDS182_12" }, { "dataset_id": "GDS182", "description": "hippocampus", "sample_id": [ "GSM2928", "GSM2929" ], "type": "tissue", "id": "GDS182_13" }, { "dataset_id": "GDS182", "description": "large intestine", "sample_id": [ "GSM2932", "GSM2931" ], "type": "tissue", "id": "GDS182_14" }, { "dataset_id": "GDS182", "description": "liver", "sample_id": [ "GSM2933", "GSM2934" ], "type": "tissue", "id": "GDS182_15" }, { "dataset_id": "GDS182", "description": "lung", "sample_id": [ "GSM2936", "GSM2935" ], "type": "tissue", "id": "GDS182_16" }, { "dataset_id": "GDS182", "description": "adipose tissue", "sample_id": [ "GSM2937", "GSM2938" ], "type": "tissue", "id": "GDS182_17" }, { "dataset_id": "GDS182", "description": "lymph node", "sample_id": [ "GSM2939", "GSM2940" ], "type": "tissue", "id": "GDS182_18" }, { "dataset_id": "GDS182", "description": "prostate", "sample_id": [ "GSM2943", "GSM2942" ], "type": "tissue", "id": "GDS182_19" }, { "dataset_id": "GDS182", "description": "eye", "sample_id": [ "GSM2945", "GSM2944" ], "type": "tissue", "id": "GDS182_20" }, { "dataset_id": "GDS182", "description": "bladder", "sample_id": [ "GSM2946", "GSM2947" ], "type": "tissue", "id": "GDS182_21" }, { "dataset_id": "GDS182", "description": "cortex", "sample_id": [ "GSM2948", "GSM2967" ], "type": "tissue", "id": "GDS182_22" }, { "dataset_id": "GDS182", "description": "kidney", "sample_id": [ "GSM2949", "GSM2930" ], "type": "tissue", "id": "GDS182_23" }, { "dataset_id": "GDS182", "description": "skeletal muscle", "sample_id": [ "GSM2951", "GSM2952" ], "type": "tissue", "id": "GDS182_24" }, { "dataset_id": "GDS182", "description": "adrenal gland", "sample_id": [ "GSM2953", "GSM2968" ], "type": "tissue", "id": "GDS182_25" }, { "dataset_id": "GDS182", "description": "snout epidermis", "sample_id": [ "GSM2954", "GSM2955" ], "type": "tissue", "id": "GDS182_26" }, { "dataset_id": "GDS182", "description": "spleen", "sample_id": [ "GSM2956", "GSM2957" ], "type": "tissue", "id": "GDS182_27" }, { "dataset_id": "GDS182", "description": "thyroid", "sample_id": [ "GSM2958", "GSM2979" ], "type": "tissue", "id": "GDS182_28" }, { "dataset_id": "GDS182", "description": "tongue epidermis", "sample_id": [ "GSM2959", "GSM2980" ], "type": "tissue", "id": "GDS182_29" }, { "dataset_id": "GDS182", "description": "trigeminal", "sample_id": [ "GSM2960", "GSM2961" ], "type": "tissue", "id": "GDS182_30" }, { "dataset_id": "GDS182", "description": "uterus", "sample_id": [ "GSM2963", "GSM2962" ], "type": "tissue", "id": "GDS182_31" }, { "dataset_id": "GDS182", "description": "epidermis", "sample_id": [ "GSM2964", "GSM2965" ], "type": "tissue", "id": "GDS182_32" }, { "dataset_id": "GDS182", "description": "bone marrow", "sample_id": [ "GSM2970", "GSM2969" ], "type": "tissue", "id": "GDS182_33" }, { "dataset_id": "GDS182", "description": "amygdala", "sample_id": [ "GSM2971", "GSM2966" ], "type": "tissue", "id": "GDS182_34" }, { "dataset_id": "GDS182", "description": "placenta", "sample_id": [ "GSM2973", "GSM2972" ], "type": "tissue", "id": "GDS182_35" }, { "dataset_id": "GDS182", "description": "mammary gland", "sample_id": [ "GSM2975", "GSM2974" ], "type": "tissue", "id": "GDS182_36" }, { "dataset_id": "GDS182", "description": "umbilical cord", "sample_id": [ "GSM2976", "GSM2977" ], "type": "tissue", "id": "GDS182_37" }, { "dataset_id": "GDS182", "description": "salivary gland", "sample_id": [ "GSM2978", "GSM2950" ], "type": "tissue", "id": "GDS182_38" }, { "dataset_id": "GDS182", "description": "digits", "sample_id": [ "GSM2983", "GSM2982" ], "type": "tissue", "id": "GDS182_39" }, { "dataset_id": "GDS182", "description": "gall bladder", "sample_id": [ "GSM2984", "GSM2927" ], "type": "tissue", "id": "GDS182_40" }, { "dataset_id": "GDS182", "description": "testis", "sample_id": [ "GSM2985", "GSM2986" ], "type": "tissue", "id": "GDS182_41" }, { "dataset_id": "GDS182", "description": "thymus", "sample_id": [ "GSM2987", "GSM2988" ], "type": "tissue", "id": "GDS182_42" }, { "dataset_id": "GDS182", "description": "trachea", "sample_id": [ "GSM2989", "GSM2990" ], "type": "tissue", "id": "GDS182_43" }, { "dataset_id": "GDS182", "description": "ovary", "sample_id": [ "GSM2991", "GSM2941" ], "type": "tissue", "id": "GDS182_44" }, { "dataset_id": "GDS182", "description": "dorsal root ganglion", "sample_id": [ "GSM2992", "GSM2993" ], "type": "tissue", "id": "GDS182_45" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS182", "version": 1.0, "instances": "90", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS182.tab", "compression": "gz" } ], [ [ "GDS1821.tab" ], { "title": "Muscle cell survival mediated by transcriptional coactivator p300", "description": "Analysis of insulin growth factor II deficient C2AS12 myoblasts expressing wild type or protein interaction domain mutant p300 at 0 and 24 hours after a switch to low serum media. Wild type but not the mutant p300 prevents the progressive cell death induced by serum withdrawal.", "type": "Expression profiling by array", "pubmed_id": "16672693", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4224", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1821", "description": "wild type p300", "sample_id": [ "GSM96353", "GSM96354", "GSM96356", "GSM96357" ], "type": "genotype/variation", "id": "GDS1821_1" }, { "dataset_id": "GDS1821", "description": "mutant p300", "sample_id": [ "GSM96355", "GSM96358" ], "type": "genotype/variation", "id": "GDS1821_2" }, { "dataset_id": "GDS1821", "description": "untreated", "sample_id": [ "GSM96353", "GSM96355", "GSM96356", "GSM96358" ], "type": "agent", "id": "GDS1821_3" }, { "dataset_id": "GDS1821", "description": "doxycycline", "sample_id": [ "GSM96354", "GSM96357" ], "type": "agent", "id": "GDS1821_4" }, { "dataset_id": "GDS1821", "description": "0 h", "sample_id": [ "GSM96353", "GSM96354", "GSM96355" ], "type": "time", "id": "GDS1821_5" }, { "dataset_id": "GDS1821", "description": "24 h", "sample_id": [ "GSM96356", "GSM96357", "GSM96358" ], "type": "time", "id": "GDS1821_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1821", "version": 1.0, "instances": "6", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1821.tab", "compression": "gz" } ], [ [ "GDS1824.tab" ], { "title": "Transcription factors Nanog and Oct4 knockdown effect on embryonic stem cells", "description": "Analysis of embryonic stem (ES) cells following RNA interference-mediated depletion of Nanog or Oct4. Nanog and Oct4 are required to maintain the pluripotency and self-renewal of ES cells. Differentially expressed genes scanned for the presence of binding sites for Nanog and Oct4.", "type": "Expression profiling by array", "pubmed_id": "16518401", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE4189", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS1824", "description": "Control", "sample_id": [ "GSM94856", "GSM94857", "GSM94858", "GSM94859", "GSM94860" ], "type": "protocol", "id": "GDS1824_1" }, { "dataset_id": "GDS1824", "description": "Nanog knockdown", "sample_id": [ "GSM94861", "GSM94862", "GSM94863", "GSM94864", "GSM94865" ], "type": "protocol", "id": "GDS1824_2" }, { "dataset_id": "GDS1824", "description": "Oct4 knockdown", "sample_id": [ "GSM94866", "GSM94867", "GSM94868", "GSM94869" ], "type": "protocol", "id": "GDS1824_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1824", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1824.tab", "compression": "gz" } ], [ [ "GDS1826.tab" ], { "title": "Adenovirus vector effect on complement system deficient mutant livers", "description": "Analysis of livers from complement-deficient C3 knockout mutants injected with a first generation LacZ adenovirus (Ad) vector. Ad vectors are used in gene delivery. Results provide insight into the role of the complement system in elaborating multiple Ad-associated acute inflammatory responses.", "type": "Expression profiling by array", "pubmed_id": "16733096", "platform": "GPL3222", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "31780", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "29", "value_type": "log2 ratio", "reference_series": "GSE4128", "order": "none", "update_date": "Jan 24 2007", "subsets": [ { "dataset_id": "GDS1826", "description": "mock", "sample_id": [ "GSM87316", "GSM87317", "GSM93633", "GSM93634", "GSM93651", "GSM93652", "GSM93653", "GSM93654", "GSM93657", "GSM93998", "GSM93999", "GSM94000", "GSM94001" ], "type": "infection", "id": "GDS1826_1" }, { "dataset_id": "GDS1826", "description": "adenovirus vector", "sample_id": [ "GSM86643", "GSM87306", "GSM87307", "GSM87308", "GSM87309", "GSM87310", "GSM87311", "GSM87312", "GSM87313", "GSM87314", "GSM87315", "GSM93655", "GSM93656", "GSM93658", "GSM93659", "GSM93660" ], "type": "infection", "id": "GDS1826_2" }, { "dataset_id": "GDS1826", "description": "wild type", "sample_id": [ "GSM86643", "GSM87306", "GSM87307", "GSM87308", "GSM87309", "GSM87310", "GSM87311", "GSM87312", "GSM87313", "GSM87314", "GSM87315", "GSM87316", "GSM87317", "GSM93998", "GSM93999", "GSM94000", "GSM94001" ], "type": "genotype/variation", "id": "GDS1826_3" }, { "dataset_id": "GDS1826", "description": "C3 knockout", "sample_id": [ "GSM93633", "GSM93634", "GSM93651", "GSM93652", "GSM93653", "GSM93654", "GSM93655", "GSM93656", "GSM93657", "GSM93658", "GSM93659", "GSM93660" ], "type": "genotype/variation", "id": "GDS1826_4" } ], "taxid": "10090", "genes": 25829, "aggregation_function": "mean", "name": "GDS1826", "version": 1.0, "instances": "29", "variables": 25832, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1826.tab", "compression": "gz" } ], [ [ "GDS183.tab" ], { "title": "Bladder tumor stage classification", "description": "Identification of clinically relevant subclasses of bladder carcinoma. Three major stages identified, Ta, T1 and T2-4. Ta tumors further classified into subgroups. A 32-gene molecular classifier was built.", "type": "Expression profiling by array", "pubmed_id": "12469123", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE89", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS183", "description": "tumor stage T1", "sample_id": [ "GSM2528", "GSM2519", "GSM2524", "GSM2525", "GSM2529", "GSM2539", "GSM2540", "GSM2541", "GSM2542", "GSM2543", "GSM2544" ], "type": "disease state", "id": "GDS183_1" }, { "dataset_id": "GDS183", "description": "tumor stage T2+", "sample_id": [ "GSM2505", "GSM2510", "GSM2512", "GSM2506", "GSM2509", "GSM2515", "GSM2526", "GSM2538", "GSM2513" ], "type": "disease state", "id": "GDS183_2" }, { "dataset_id": "GDS183", "description": "tumor stage Ta", "sample_id": [ "GSM2521", "GSM2530", "GSM2531", "GSM2532", "GSM2533", "GSM2536", "GSM2507", "GSM2508", "GSM2511", "GSM2514", "GSM2516", "GSM2517", "GSM2518", "GSM2520", "GSM2522", "GSM2523", "GSM2527", "GSM2534", "GSM2535", "GSM2537" ], "type": "disease state", "id": "GDS183_3" }, { "dataset_id": "GDS183", "description": "grade 2", "sample_id": [ "GSM2521", "GSM2530", "GSM2531", "GSM2532", "GSM2533", "GSM2536" ], "type": "tissue", "id": "GDS183_4" }, { "dataset_id": "GDS183", "description": "grade 3", "sample_id": [ "GSM2528", "GSM2519", "GSM2524", "GSM2525", "GSM2529", "GSM2539", "GSM2540", "GSM2541", "GSM2542", "GSM2543", "GSM2544", "GSM2510", "GSM2512", "GSM2506", "GSM2509", "GSM2515", "GSM2526", "GSM2538", "GSM2507", "GSM2508", "GSM2511", "GSM2514", "GSM2516", "GSM2517", "GSM2518", "GSM2520", "GSM2522", "GSM2523", "GSM2527", "GSM2534", "GSM2535", "GSM2537" ], "type": "tissue", "id": "GDS183_5" }, { "dataset_id": "GDS183", "description": "grade 4", "sample_id": [ "GSM2513" ], "type": "tissue", "id": "GDS183_6" }, { "dataset_id": "GDS183", "description": "grade unknown", "sample_id": [ "GSM2505" ], "type": "tissue", "id": "GDS183_7" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS183", "version": 1.0, "instances": "40", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS183.tab", "compression": "gz" } ], [ [ "GDS1830.tab" ], { "title": "Chemoresistant glioblastomas: expression profile", "description": "Expression analysis of cell lines derived from primary and recurrent glioblastomas with resistance to O6-alkylating agents, BCNU and TMZ. Chemoresistance to these widely-used drugs is a major obstacle to tumor treatment. Results identify a transcriptomic signature of resistance to alkylating agents.", "type": "Expression profiling by array", "pubmed_id": "16365179", "platform": "GPL1831", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "41472", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log2 ratio", "reference_series": "GSE2221", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1830", "description": "primary tumor", "sample_id": [ "GSM40622", "GSM40625", "GSM40626", "GSM40642", "GSM40644", "GSM40646", "GSM40648" ], "type": "disease state", "id": "GDS1830_1" }, { "dataset_id": "GDS1830", "description": "recurrent tumor", "sample_id": [ "GSM40619", "GSM40620", "GSM40623", "GSM40627", "GSM40628", "GSM40635", "GSM40638", "GSM40643" ], "type": "disease state", "id": "GDS1830_2" }, { "dataset_id": "GDS1830", "description": "BCNU-resistant", "sample_id": [ "GSM40619", "GSM40622", "GSM40623", "GSM40648" ], "type": "cell line", "id": "GDS1830_3" }, { "dataset_id": "GDS1830", "description": "TMZ-resistant", "sample_id": [ "GSM40620", "GSM40625", "GSM40627", "GSM40628", "GSM40646" ], "type": "cell line", "id": "GDS1830_4" }, { "dataset_id": "GDS1830", "description": "drug-sensitive control", "sample_id": [ "GSM40626", "GSM40642", "GSM40644" ], "type": "cell line", "id": "GDS1830_5" }, { "dataset_id": "GDS1830", "description": "drug-resistant control", "sample_id": [ "GSM40635", "GSM40638", "GSM40643" ], "type": "cell line", "id": "GDS1830_6" } ], "taxid": "9606", "genes": 34280, "aggregation_function": "mean", "name": "GDS1830", "version": 1.0, "instances": "15", "variables": 34283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1830.tab", "compression": "gz" } ], [ [ "GDS1832.tab" ], { "title": "Testosterone effect on female lacrimal, meibomian, and submandibular glands", "description": "Expression profiling of lacrimal, meibomian, and submandibular glands from BALB/c females. Females ovariectomized at 8 weeks and allowed to recover from surgery for 10 days prior to testosterone treatment. Results compared to the response of male glands to testosterone.", "type": "Expression profiling by array", "pubmed_id": "16911104", "platform": "GPL1310", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10500", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3995", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS1832", "description": "lacrimal gland", "sample_id": [ "GSM91242", "GSM91243", "GSM91244", "GSM91245", "GSM91246", "GSM91247" ], "type": "tissue", "id": "GDS1832_1" }, { "dataset_id": "GDS1832", "description": "meibomian gland", "sample_id": [ "GSM91248", "GSM91249", "GSM91250", "GSM91251", "GSM91252", "GSM91253" ], "type": "tissue", "id": "GDS1832_2" }, { "dataset_id": "GDS1832", "description": "submandibular gland", "sample_id": [ "GSM91254", "GSM91255", "GSM91256", "GSM91257", "GSM91258", "GSM91259" ], "type": "tissue", "id": "GDS1832_3" }, { "dataset_id": "GDS1832", "description": "placebo", "sample_id": [ "GSM91242", "GSM91243", "GSM91244", "GSM91248", "GSM91249", "GSM91250", "GSM91254", "GSM91255", "GSM91259" ], "type": "agent", "id": "GDS1832_4" }, { "dataset_id": "GDS1832", "description": "testosterone", "sample_id": [ "GSM91245", "GSM91246", "GSM91247", "GSM91251", "GSM91252", "GSM91253", "GSM91256", "GSM91257", "GSM91258" ], "type": "agent", "id": "GDS1832_5" } ], "taxid": "10090", "genes": 9940, "aggregation_function": "mean", "name": "GDS1832", "version": 1.0, "instances": "18", "variables": 9943, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1832.tab", "compression": "gz" } ], [ [ "GDS1833.tab" ], { "title": "Testosterone effect on the female submandibular gland", "description": "Expression profiling of submandibular glands from BALB/c females. Females ovariectomized at 8 weeks and allowed to recover from surgery for 10 days prior to testosterone treatment. Results compared to the response of male glands to testosterone.", "type": "Expression profiling by array", "pubmed_id": "16911104", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3995", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1833", "description": "placebo", "sample_id": [ "GSM91274", "GSM91275", "GSM91276" ], "type": "agent", "id": "GDS1833_1" }, { "dataset_id": "GDS1833", "description": "testosterone", "sample_id": [ "GSM91277", "GSM91278", "GSM91279" ], "type": "agent", "id": "GDS1833_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1833", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1833.tab", "compression": "gz" } ], [ [ "GDS1835.tab" ], { "title": "Various cell lines and Universal Reference RNA (II)", "description": "Analysis of individual cell lines representing different tissues against a Universal Reference RNA (URR). URR prepared from pooled RNA from the individual cell lines. Results indicate the individual cell lines contribute their own unique set of genes, thereby diversifying gene representation in URR.", "type": "Expression profiling by array", "pubmed_id": "15113400", "platform": "GPL3305", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log2 ratio", "reference_series": "GSE3972", "order": "none", "update_date": "Jan 25 2007", "subsets": [ { "dataset_id": "GDS1835", "description": "B lymphocyte", "sample_id": [ "GSM90611" ], "type": "cell line", "id": "GDS1835_1" }, { "dataset_id": "GDS1835", "description": "brain", "sample_id": [ "GSM90618" ], "type": "cell line", "id": "GDS1835_2" }, { "dataset_id": "GDS1835", "description": "breast", "sample_id": [ "GSM90617" ], "type": "cell line", "id": "GDS1835_3" }, { "dataset_id": "GDS1835", "description": "cervix", "sample_id": [ "GSM90615" ], "type": "cell line", "id": "GDS1835_4" }, { "dataset_id": "GDS1835", "description": "liposarcoma", "sample_id": [ "GSM90619" ], "type": "cell line", "id": "GDS1835_5" }, { "dataset_id": "GDS1835", "description": "liver", "sample_id": [ "GSM90612" ], "type": "cell line", "id": "GDS1835_6" }, { "dataset_id": "GDS1835", "description": "macrophage", "sample_id": [ "GSM90614" ], "type": "cell line", "id": "GDS1835_7" }, { "dataset_id": "GDS1835", "description": "skin", "sample_id": [ "GSM90620" ], "type": "cell line", "id": "GDS1835_8" }, { "dataset_id": "GDS1835", "description": "T lymphoblast", "sample_id": [ "GSM90613" ], "type": "cell line", "id": "GDS1835_9" }, { "dataset_id": "GDS1835", "description": "testis", "sample_id": [ "GSM90616" ], "type": "cell line", "id": "GDS1835_10" } ], "taxid": "9606", "genes": 34543, "aggregation_function": "mean", "name": "GDS1835", "version": 1.0, "instances": "10", "variables": 34545, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1835.tab", "compression": "gz" } ], [ [ "GDS1836.tab" ], { "title": "Androgen insensitivity syndrome: genital fibroblast response to dihydrotestosterone", "description": "Analysis of genital fibroblasts from 46,XY females with complete androgen insensitivity syndrome (AIS). Response of cells to dihydrotestosterone examined. Most AIS affected individuals have mutated androgen receptors (AR). Results provide insight into the role of AR in genital differentiation.", "type": "Expression profiling by array", "pubmed_id": "12801411", "platform": "GPL3039", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "44544", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "21", "value_type": "log2 ratio", "reference_series": "GSE3871", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS1836", "description": "1 treatment for 24 h", "sample_id": [ "GSM88422", "GSM88423", "GSM88429", "GSM88435", "GSM88438", "GSM88439", "GSM88440", "GSM88441", "GSM88442" ], "type": "protocol", "id": "GDS1836_1" }, { "dataset_id": "GDS1836", "description": "6 treatments in 14 d", "sample_id": [ "GSM88424", "GSM88425", "GSM88426", "GSM88427", "GSM88428", "GSM88430", "GSM88431", "GSM88432", "GSM88433", "GSM88434", "GSM88436", "GSM88437" ], "type": "protocol", "id": "GDS1836_2" }, { "dataset_id": "GDS1836", "description": "normal male", "sample_id": [ "GSM88422", "GSM88423", "GSM88424", "GSM88426", "GSM88431", "GSM88432", "GSM88434", "GSM88436", "GSM88438", "GSM88440", "GSM88441", "GSM88442" ], "type": "disease state", "id": "GDS1836_3" }, { "dataset_id": "GDS1836", "description": "AIS", "sample_id": [ "GSM88425", "GSM88427", "GSM88428", "GSM88429", "GSM88430", "GSM88433", "GSM88435", "GSM88437", "GSM88439" ], "type": "disease state", "id": "GDS1836_4" }, { "dataset_id": "GDS1836", "description": "control", "sample_id": [ "GSM88424", "GSM88427", "GSM88429", "GSM88430", "GSM88431", "GSM88436", "GSM88437", "GSM88440", "GSM88442" ], "type": "agent", "id": "GDS1836_5" }, { "dataset_id": "GDS1836", "description": "dihydrotestosterone", "sample_id": [ "GSM88422", "GSM88423", "GSM88425", "GSM88426", "GSM88428", "GSM88432", "GSM88433", "GSM88434", "GSM88435", "GSM88438", "GSM88439", "GSM88441" ], "type": "agent", "id": "GDS1836_6" }, { "dataset_id": "GDS1836", "description": "control", "sample_id": [ "GSM88424", "GSM88427", "GSM88429", "GSM88430", "GSM88431", "GSM88436", "GSM88437", "GSM88440", "GSM88442" ], "type": "dose", "id": "GDS1836_7" }, { "dataset_id": "GDS1836", "description": "100 nM", "sample_id": [ "GSM88422", "GSM88425", "GSM88426", "GSM88428", "GSM88432", "GSM88433", "GSM88434", "GSM88435", "GSM88438" ], "type": "dose", "id": "GDS1836_8" }, { "dataset_id": "GDS1836", "description": "1000 nM", "sample_id": [ "GSM88423", "GSM88439", "GSM88441" ], "type": "dose", "id": "GDS1836_9" } ], "taxid": "9606", "genes": 35859, "aggregation_function": "mean", "name": "GDS1836", "version": 1.0, "instances": "21", "variables": 35864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1836.tab", "compression": "gz" } ], [ [ "GDS1837.tab" ], { "title": "c-Raf inhibitor GW5074 anti-apoptotic effect on cerebellar granule neurons: time course", "description": "Analysis of cultured cerebellar granule neurons in low potassium medium 3 and 6 hours following treatment with the c-Raf inhibitor GW5074. GW5074 blocks low potassium induced cell death. Results provide insight into the neuroprotective action of GW5074.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2872", "order": "none", "update_date": "Jun 09 2006", "subsets": [ { "dataset_id": "GDS1837", "description": "low potassium", "sample_id": [ "GSM53241", "GSM53245", "GSM53247", "GSM53248", "GSM53249", "GSM53250" ], "type": "agent", "id": "GDS1837_1" }, { "dataset_id": "GDS1837", "description": "GW5074 and low potassium", "sample_id": [ "GSM53240", "GSM53242", "GSM53243", "GSM53244", "GSM53246", "GSM53251" ], "type": "agent", "id": "GDS1837_2" }, { "dataset_id": "GDS1837", "description": "3 hours", "sample_id": [ "GSM53240", "GSM53242", "GSM53245", "GSM53247", "GSM53249", "GSM53251" ], "type": "time", "id": "GDS1837_3" }, { "dataset_id": "GDS1837", "description": "6 hours", "sample_id": [ "GSM53241", "GSM53243", "GSM53244", "GSM53246", "GSM53248", "GSM53250" ], "type": "time", "id": "GDS1837_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1837", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1837.tab", "compression": "gz" } ], [ [ "GDS1838.tab" ], { "title": "Skeletal muscle synaptic region", "description": "Analysis of synaptic regions of diaphragm muscles from 16-day-old animals. Results identify genes preferentially expressed in the synaptic region of muscles. Such genes are candidates for muscle-derived retrograde signals that regulate the differentiation of motor axon terminals.", "type": "Expression profiling by array", "pubmed_id": "16606832", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2873", "order": "none", "update_date": "Jun 09 2006", "subsets": [ { "dataset_id": "GDS1838", "description": "non-synaptic region", "sample_id": [ "GSM53237", "GSM53239" ], "type": "tissue", "id": "GDS1838_1" }, { "dataset_id": "GDS1838", "description": "synaptic region", "sample_id": [ "GSM53236", "GSM53238" ], "type": "tissue", "id": "GDS1838_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1838", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1838.tab", "compression": "gz" } ], [ [ "GDS1839.tab" ], { "title": "Follicular lymphomas and response to rituximab", "description": "Analysis of lymph node biopsies from 24 follicular lymphoma patients. Biopsies obtained before any systemic therapy. Results analyzed together with the subsequent response of patients to rituximab, a monoclonal antibody directed against the B cell antigen, CD20.", "type": "Expression profiling by array", "pubmed_id": "12571354", "platform": "GPL3113", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37632", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log2 ratio", "reference_series": "GSE3647", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1839", "description": "no response to rituximab", "sample_id": [ "GSM84721", "GSM84722", "GSM84725", "GSM84727", "GSM84729", "GSM84730", "GSM84731", "GSM84735", "GSM84737", "GSM84738", "GSM84741", "GSM84742" ], "type": "disease state", "id": "GDS1839_1" }, { "dataset_id": "GDS1839", "description": "partial response to rituximab", "sample_id": [ "GSM84723", "GSM84734", "GSM84736", "GSM84739", "GSM84740", "GSM84743", "GSM84744" ], "type": "disease state", "id": "GDS1839_2" }, { "dataset_id": "GDS1839", "description": "complete response to rituximab", "sample_id": [ "GSM84724", "GSM84726", "GSM84728", "GSM84732", "GSM84733" ], "type": "disease state", "id": "GDS1839_3" } ], "taxid": "9606", "genes": 27973, "aggregation_function": "mean", "name": "GDS1839", "version": 1.0, "instances": "24", "variables": 27975, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1839.tab", "compression": "gz" } ], [ [ "GDS1840.tab" ], { "title": "Denervation effect on somatosensory cortex: time course", "description": "Analysis of the adult somatosensory cortex at the forepaw/lower jaw border at various time points up to 28 days after partial paw denervation. The adult somatosensory cortex undergoes reorganization in response to changes in peripheral input, such as limb usage patterns or denervation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE2874", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1840", "description": "non-operated", "sample_id": [ "GSM53196", "GSM53197", "GSM53198", "GSM53199", "GSM53200", "GSM53201", "GSM53202", "GSM53203" ], "type": "protocol", "id": "GDS1840_1" }, { "dataset_id": "GDS1840", "description": "sham denervation", "sample_id": [ "GSM53208", "GSM53209", "GSM53210", "GSM53211", "GSM53216", "GSM53217", "GSM53218", "GSM53219", "GSM53224", "GSM53225", "GSM53226", "GSM53227", "GSM53232", "GSM53233", "GSM53234", "GSM53235" ], "type": "protocol", "id": "GDS1840_2" }, { "dataset_id": "GDS1840", "description": "partial paw denervation", "sample_id": [ "GSM53204", "GSM53205", "GSM53206", "GSM53207", "GSM53212", "GSM53213", "GSM53214", "GSM53215", "GSM53220", "GSM53221", "GSM53222", "GSM53223", "GSM53228", "GSM53229", "GSM53230", "GSM53231" ], "type": "protocol", "id": "GDS1840_3" }, { "dataset_id": "GDS1840", "description": "3 days", "sample_id": [ "GSM53204", "GSM53205", "GSM53206", "GSM53207", "GSM53208", "GSM53209", "GSM53210", "GSM53211" ], "type": "time", "id": "GDS1840_4" }, { "dataset_id": "GDS1840", "description": "7 days", "sample_id": [ "GSM53212", "GSM53213", "GSM53214", "GSM53215", "GSM53216", "GSM53217", "GSM53218", "GSM53219" ], "type": "time", "id": "GDS1840_5" }, { "dataset_id": "GDS1840", "description": "14 days", "sample_id": [ "GSM53220", "GSM53221", "GSM53222", "GSM53223", "GSM53224", "GSM53225", "GSM53226", "GSM53227" ], "type": "time", "id": "GDS1840_6" }, { "dataset_id": "GDS1840", "description": "28 days", "sample_id": [ "GSM53228", "GSM53229", "GSM53230", "GSM53231", "GSM53232", "GSM53233", "GSM53234", "GSM53235" ], "type": "time", "id": "GDS1840_7" }, { "dataset_id": "GDS1840", "description": "N/A", "sample_id": [ "GSM53196", "GSM53197", "GSM53198", "GSM53199", "GSM53200", "GSM53201", "GSM53202", "GSM53203" ], "type": "time", "id": "GDS1840_8" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1840", "version": 1.0, "instances": "40", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1840.tab", "compression": "gz" } ], [ [ "GDS1841.tab" ], { "title": "Chronic endoplasmic reticulum stress imposed by misfolded surfactant protein C (HG-U133A)", "description": "Analysis of cells that constitutively express misfolded surfactant protein C, which induces chronic endoplasmic reticulum (ER) stress and cytotoxicity. Results provide evidence for an NF-kB-dependent adaptive response to the chronic ER stress imposed by the misfolded protein.", "type": "Expression profiling by array", "pubmed_id": "16449190", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2980", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS1841", "description": "empty vector", "sample_id": [ "GSM65125", "GSM65126", "GSM65127" ], "type": "agent", "id": "GDS1841_1" }, { "dataset_id": "GDS1841", "description": "wild-type surfactant protein C", "sample_id": [ "GSM65097", "GSM65098", "GSM65124" ], "type": "agent", "id": "GDS1841_2" }, { "dataset_id": "GDS1841", "description": "misfolded surfactant protein C", "sample_id": [ "GSM65128", "GSM65129", "GSM65130" ], "type": "agent", "id": "GDS1841_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1841", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1841.tab", "compression": "gz" } ], [ [ "GDS1842.tab" ], { "title": "Ethanol effect on heads", "description": "Analysis of heads from animals exposed to 50% ethanol vapor for 40 minutes once or five times. The multiple treatments were interspersed with exposures to 10% ethanol vapor. Results provide insight into the molecular mechanisms underlying the development of fast and chronic ethanol tolerance.", "type": "Expression profiling by array", "pubmed_id": "17460067", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4531", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1842", "description": "humidified air", "sample_id": [ "GSM101531", "GSM101532", "GSM101533", "GSM101534", "GSM101535", "GSM101536" ], "type": "agent", "id": "GDS1842_1" }, { "dataset_id": "GDS1842", "description": "ethanol vapor", "sample_id": [ "GSM101537", "GSM101538", "GSM101539", "GSM101540", "GSM101541", "GSM101542", "GSM101543", "GSM101544", "GSM101545", "GSM101546", "GSM101547", "GSM101548" ], "type": "agent", "id": "GDS1842_2" }, { "dataset_id": "GDS1842", "description": "control", "sample_id": [ "GSM101531", "GSM101532", "GSM101533", "GSM101534", "GSM101535", "GSM101536" ], "type": "protocol", "id": "GDS1842_3" }, { "dataset_id": "GDS1842", "description": "one treatment", "sample_id": [ "GSM101537", "GSM101538", "GSM101539", "GSM101540", "GSM101541", "GSM101542" ], "type": "protocol", "id": "GDS1842_4" }, { "dataset_id": "GDS1842", "description": "five treatments", "sample_id": [ "GSM101543", "GSM101544", "GSM101545", "GSM101546", "GSM101547", "GSM101548" ], "type": "protocol", "id": "GDS1842_5" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1842", "version": 1.0, "instances": "18", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1842.tab", "compression": "gz" } ], [ [ "GDS1843.tab" ], { "title": "Cystic fibrosis transmembrane conductance regulator CFTR deficiency effect on lungs: time course", "description": "Expression profiling of lungs from animals lacking the cystic fibrosis transmembrane conductance regulator gene (CFTR). Animals examined at 3, 6, and 11 weeks of age. Mutations in CFTR cause cystic fibrosis, an autosomal recessive monogenic disorder.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4513", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1843", "description": "wild type", "sample_id": [ "GSM101274", "GSM101276", "GSM101278", "GSM101280", "GSM101282" ], "type": "genotype/variation", "id": "GDS1843_1" }, { "dataset_id": "GDS1843", "description": "CFTR knockout", "sample_id": [ "GSM101267", "GSM101275", "GSM101277", "GSM101279", "GSM101281" ], "type": "genotype/variation", "id": "GDS1843_2" }, { "dataset_id": "GDS1843", "description": "3 wk", "sample_id": [ "GSM101267", "GSM101274", "GSM101275", "GSM101276" ], "type": "age", "id": "GDS1843_3" }, { "dataset_id": "GDS1843", "description": "6 wk", "sample_id": [ "GSM101277", "GSM101278", "GSM101279", "GSM101280" ], "type": "age", "id": "GDS1843_4" }, { "dataset_id": "GDS1843", "description": "11 wk", "sample_id": [ "GSM101281", "GSM101282" ], "type": "age", "id": "GDS1843_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1843", "version": 1.0, "instances": "10", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1843.tab", "compression": "gz" } ], [ [ "GDS1844.tab" ], { "title": "Cystic fibrosis transmembrane conductance regulator CFTR transgene overexpression effect on lungs", "description": "Analysis of lungs of adult Cftr+/+ animals overexpressing the normal human cystic fibrosis transmembrane conductance regulator gene (CFTR) under control of the Sftpc promoter in respiratory epithelial cells. Homozygous transgenic, heterozygous transgenic and wild type mice were compared.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4512", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1844", "description": "wild type", "sample_id": [ "GSM101260", "GSM101261", "GSM101264" ], "type": "genotype/variation", "id": "GDS1844_1" }, { "dataset_id": "GDS1844", "description": "heterozygous transgenic", "sample_id": [ "GSM101258", "GSM101262", "GSM101266" ], "type": "genotype/variation", "id": "GDS1844_2" }, { "dataset_id": "GDS1844", "description": "homozygous transgenic", "sample_id": [ "GSM101259", "GSM101263", "GSM101265" ], "type": "genotype/variation", "id": "GDS1844_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1844", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1844.tab", "compression": "gz" } ], [ [ "GDS1845.tab" ], { "title": "Retinitis pigmentosa 1 gene knockout effect on retinas: time course", "description": "Analysis of retinas of animals disrupted for the retinitis pigmentosa 1 (RP1) gene. Animals examined up to postnatal day 21. Results provide insight into mechanisms underlying autosomal dominant progressive RP caused by RP1 mutations and identify molecules involved early in the disease process.", "type": "Expression profiling by array", "pubmed_id": "16126734", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE128", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1845", "description": "wild type", "sample_id": [ "GSM3182", "GSM3185", "GSM3186", "GSM3187", "GSM3214", "GSM3215", "GSM3216", "GSM3217", "GSM3218", "GSM3219", "GSM3220", "GSM3221", "GSM3222", "GSM3223", "GSM3224" ], "type": "genotype/variation", "id": "GDS1845_1" }, { "dataset_id": "GDS1845", "description": "RP1 knockout", "sample_id": [ "GSM3225", "GSM3226", "GSM3227", "GSM3228", "GSM3229", "GSM3230", "GSM3231", "GSM3232", "GSM3233", "GSM3234", "GSM3235", "GSM3236", "GSM3237", "GSM3238", "GSM3239" ], "type": "genotype/variation", "id": "GDS1845_2" }, { "dataset_id": "GDS1845", "description": "7 d", "sample_id": [ "GSM3182", "GSM3185", "GSM3186", "GSM3225", "GSM3226", "GSM3227" ], "type": "age", "id": "GDS1845_3" }, { "dataset_id": "GDS1845", "description": "10 d", "sample_id": [ "GSM3187", "GSM3214", "GSM3215", "GSM3228", "GSM3229", "GSM3230" ], "type": "age", "id": "GDS1845_4" }, { "dataset_id": "GDS1845", "description": "14 d", "sample_id": [ "GSM3216", "GSM3217", "GSM3218", "GSM3231", "GSM3232", "GSM3233" ], "type": "age", "id": "GDS1845_5" }, { "dataset_id": "GDS1845", "description": "18 d", "sample_id": [ "GSM3219", "GSM3220", "GSM3221", "GSM3234", "GSM3235", "GSM3236" ], "type": "age", "id": "GDS1845_6" }, { "dataset_id": "GDS1845", "description": "21 d", "sample_id": [ "GSM3222", "GSM3223", "GSM3224", "GSM3237", "GSM3238", "GSM3239" ], "type": "age", "id": "GDS1845_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1845", "version": 1.0, "instances": "30", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1845.tab", "compression": "gz" } ], [ [ "GDS1846.tab" ], { "title": "Interferon gamma effect on keratinocytes: time course", "description": "Analysis of keratinocytes treated with interferon gamma (IFN-gamma) for up to 48 hours. IFN-gamma is a multifunctional, immunomodulatory cytokine with cell type-specific antiviral activities. Results provide insight into molecular processes regulated by IFN-gamma in keratinocytes.", "type": "Expression profiling by array", "pubmed_id": "14760888", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE440", "order": "none", "update_date": "Jan 25 2007", "subsets": [ { "dataset_id": "GDS1846", "description": "untreated", "sample_id": [ "GSM6709", "GSM6710", "GSM6714", "GSM6716", "GSM6719" ], "type": "agent", "id": "GDS1846_1" }, { "dataset_id": "GDS1846", "description": "IFN-gamma", "sample_id": [ "GSM7765", "GSM7766", "GSM7767", "GSM7769" ], "type": "agent", "id": "GDS1846_2" }, { "dataset_id": "GDS1846", "description": "1 h", "sample_id": [ "GSM6709", "GSM6719", "GSM7765" ], "type": "time", "id": "GDS1846_3" }, { "dataset_id": "GDS1846", "description": "4 h", "sample_id": [ "GSM6710", "GSM7766" ], "type": "time", "id": "GDS1846_4" }, { "dataset_id": "GDS1846", "description": "24 h", "sample_id": [ "GSM6714", "GSM7767" ], "type": "time", "id": "GDS1846_5" }, { "dataset_id": "GDS1846", "description": "48 h", "sample_id": [ "GSM6716", "GSM7769" ], "type": "time", "id": "GDS1846_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1846", "version": 1.0, "instances": "9", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1846.tab", "compression": "gz" } ], [ [ "GDS1847.tab" ], { "title": "Vitamin D effect on intestinal epithelial cells", "description": "Analysis of intestinal epithelial Caco-2 cells following treatment with 1,25-dihydroxyvitamin D3 for 24 hours. 1,25-dihydroxyvitamin D3 stimulated calcium absorption in the intestine. Results provide insight into the additional effects of vitamin D on intestinal epithelial cells.", "type": "Expression profiling by array", "pubmed_id": "14996990", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE444", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1847", "description": "control", "sample_id": [ "GSM6778", "GSM6780", "GSM6782", "GSM6784", "GSM6786" ], "type": "agent", "id": "GDS1847_1" }, { "dataset_id": "GDS1847", "description": "vitamin D", "sample_id": [ "GSM6779", "GSM6781", "GSM6783", "GSM6785", "GSM6787" ], "type": "agent", "id": "GDS1847_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1847", "version": 1.0, "instances": "10", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1847.tab", "compression": "gz" } ], [ [ "GDS1848.tab" ], { "title": "High temperature adapted strains", "description": "Analysis of 3 strains derived by growing the ancestral Bc251 strain for 2,000 generations at 41.5 degrees C. Cells grown to mid log-phase at 41.5 degrees C. Results provide insight into the role of heat-inducible genes in the genetic adaptation to long-term temperature stress.", "type": "Expression profiling by array", "pubmed_id": "12672900", "platform": "GPL189", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4314", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE533", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1848", "description": "ancestral", "sample_id": [ "GSM7886", "GSM8110", "GSM8111" ], "type": "strain", "id": "GDS1848_1" }, { "dataset_id": "GDS1848", "description": "42-1", "sample_id": [ "GSM8112", "GSM8113", "GSM8114" ], "type": "strain", "id": "GDS1848_2" }, { "dataset_id": "GDS1848", "description": "42-2", "sample_id": [ "GSM8115", "GSM8116", "GSM8117" ], "type": "strain", "id": "GDS1848_3" }, { "dataset_id": "GDS1848", "description": "42-3", "sample_id": [ "GSM8118", "GSM8119", "GSM8120" ], "type": "strain", "id": "GDS1848_4" } ], "taxid": "562", "genes": 4271, "aggregation_function": "mean", "name": "GDS1848", "version": 1.0, "instances": "12", "variables": 4273, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1848.tab", "compression": "gz" } ], [ [ "GDS1850.tab" ], { "title": "Carious pulpal tissue", "description": "Expression profiling of core pulpal tissue from carious teeth. RNA pooled from 11 carious teeth. Results provide insight into the molecular events that occur during the progression of dental caries.", "type": "Expression profiling by array", "pubmed_id": "15869869", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1629", "order": "none", "update_date": "Jan 25 2007", "subsets": [ { "dataset_id": "GDS1850", "description": "healthy", "sample_id": [ "GSM27727", "GSM27728" ], "type": "disease state", "id": "GDS1850_1" }, { "dataset_id": "GDS1850", "description": "carious", "sample_id": [ "GSM27725", "GSM27726" ], "type": "disease state", "id": "GDS1850_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1850", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1850.tab", "compression": "gz" } ], [ [ "GDS1851.tab" ], { "title": "Cold and subsequent immobilization stress effect on adrenal medulla", "description": "Analysis of the adrenal medulla of animals exposed to cold stress for 28 days and subsequently subjected to immobilization stress. Effect of cold stress exposure for 1 and 7 days examined. Adaptation to cold stress leads to sensitization to a different stressor.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2875", "order": "none", "update_date": "Apr 27 2006", "subsets": [ { "dataset_id": "GDS1851", "description": "room temperature", "sample_id": [ "GSM53190", "GSM53191" ], "type": "stress", "id": "GDS1851_1" }, { "dataset_id": "GDS1851", "description": "cold stress", "sample_id": [ "GSM53192", "GSM53193", "GSM53194", "GSM53195" ], "type": "stress", "id": "GDS1851_2" }, { "dataset_id": "GDS1851", "description": "none", "sample_id": [ "GSM53190", "GSM53192", "GSM53193", "GSM53194" ], "type": "shock", "id": "GDS1851_3" }, { "dataset_id": "GDS1851", "description": "immobilization stress", "sample_id": [ "GSM53191", "GSM53195" ], "type": "shock", "id": "GDS1851_4" }, { "dataset_id": "GDS1851", "description": "0 d", "sample_id": [ "GSM53190", "GSM53191" ], "type": "time", "id": "GDS1851_5" }, { "dataset_id": "GDS1851", "description": "1 d", "sample_id": [ "GSM53192" ], "type": "time", "id": "GDS1851_6" }, { "dataset_id": "GDS1851", "description": "7 d", "sample_id": [ "GSM53193" ], "type": "time", "id": "GDS1851_7" }, { "dataset_id": "GDS1851", "description": "28 d", "sample_id": [ "GSM53194", "GSM53195" ], "type": "time", "id": "GDS1851_8" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1851", "version": 1.0, "instances": "6", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1851.tab", "compression": "gz" } ], [ [ "GDS1852.tab" ], { "title": "siRNA knockdown and transcriptional response to DNA damage", "description": "Analysis of HEK293 cells following siRNA knockdown of p53, RelA, or ATM, and subsequent treatment with neocarzinostatin, a radiomimetic drug that induces DNA double-strand breaks. Results indicate RNAi combined with expression profiling is a powerful method for dissecting transcriptional networks.", "type": "Expression profiling by array", "pubmed_id": "15892871", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1676", "order": "none", "update_date": "Feb 01 2007", "subsets": [ { "dataset_id": "GDS1852", "description": "uninfected control", "sample_id": [ "GSM28627", "GSM28628", "GSM28629", "GSM28630", "GSM28631", "GSM28632" ], "type": "protocol", "id": "GDS1852_1" }, { "dataset_id": "GDS1852", "description": "LacZ control", "sample_id": [ "GSM28633", "GSM28634", "GSM28635", "GSM28636", "GSM28637", "GSM28638" ], "type": "protocol", "id": "GDS1852_2" }, { "dataset_id": "GDS1852", "description": "ATM knockdown", "sample_id": [ "GSM28639", "GSM28640", "GSM28641", "GSM28642", "GSM28643", "GSM28644" ], "type": "protocol", "id": "GDS1852_3" }, { "dataset_id": "GDS1852", "description": "RelA knockdown", "sample_id": [ "GSM28645", "GSM28646", "GSM28647", "GSM28648", "GSM28649", "GSM28650" ], "type": "protocol", "id": "GDS1852_4" }, { "dataset_id": "GDS1852", "description": "p53 knockdown", "sample_id": [ "GSM28651", "GSM28652", "GSM28653", "GSM28654", "GSM28655", "GSM28656" ], "type": "protocol", "id": "GDS1852_5" }, { "dataset_id": "GDS1852", "description": "untreated", "sample_id": [ "GSM28627", "GSM28628", "GSM28629", "GSM28633", "GSM28634", "GSM28635", "GSM28639", "GSM28640", "GSM28641", "GSM28645", "GSM28646", "GSM28647", "GSM28651", "GSM28652", "GSM28653" ], "type": "agent", "id": "GDS1852_6" }, { "dataset_id": "GDS1852", "description": "neocarzinostatin", "sample_id": [ "GSM28630", "GSM28631", "GSM28632", "GSM28636", "GSM28637", "GSM28638", "GSM28642", "GSM28643", "GSM28644", "GSM28648", "GSM28649", "GSM28650", "GSM28654", "GSM28655", "GSM28656" ], "type": "agent", "id": "GDS1852_7" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1852", "version": 1.0, "instances": "30", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1852.tab", "compression": "gz" } ], [ [ "GDS1853.tab" ], { "title": "Intramedullary nail and internal plate fixation treated diaphyseal femoral fractures: time course", "description": "Comparison of healing diaphyseal femoral fractures treated with intramedullary nail fixation or with internal plate fixation. Expression profiles examined at various time points up to 6 weeks post-treatment. Results provide insight into the effect of fracture fixation technique on fracture repair.", "type": "Expression profiling by array", "pubmed_id": "16424807", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE1685", "order": "none", "update_date": "Feb 01 2007", "subsets": [ { "dataset_id": "GDS1853", "description": "no fracture", "sample_id": [ "GSM29016" ], "type": "shock", "id": "GDS1853_1" }, { "dataset_id": "GDS1853", "description": "sham fracture", "sample_id": [ "GSM29029", "GSM29030", "GSM29031", "GSM29032", "GSM29033", "GSM29034" ], "type": "shock", "id": "GDS1853_2" }, { "dataset_id": "GDS1853", "description": "fracture", "sample_id": [ "GSM29017", "GSM29018", "GSM29019", "GSM29020", "GSM29021", "GSM29022", "GSM29023", "GSM29024", "GSM29025", "GSM29026", "GSM29027", "GSM29028" ], "type": "shock", "id": "GDS1853_3" }, { "dataset_id": "GDS1853", "description": "control", "sample_id": [ "GSM29016", "GSM29029", "GSM29030", "GSM29031", "GSM29032", "GSM29033", "GSM29034" ], "type": "protocol", "id": "GDS1853_4" }, { "dataset_id": "GDS1853", "description": "intramedullary nail", "sample_id": [ "GSM29017", "GSM29018", "GSM29019", "GSM29020", "GSM29021", "GSM29022" ], "type": "protocol", "id": "GDS1853_5" }, { "dataset_id": "GDS1853", "description": "internal plate", "sample_id": [ "GSM29023", "GSM29024", "GSM29025", "GSM29026", "GSM29027", "GSM29028" ], "type": "protocol", "id": "GDS1853_6" }, { "dataset_id": "GDS1853", "description": "0 d", "sample_id": [ "GSM29016" ], "type": "time", "id": "GDS1853_7" }, { "dataset_id": "GDS1853", "description": "1 d", "sample_id": [ "GSM29017", "GSM29023", "GSM29029" ], "type": "time", "id": "GDS1853_8" }, { "dataset_id": "GDS1853", "description": "3 d", "sample_id": [ "GSM29018", "GSM29024", "GSM29030" ], "type": "time", "id": "GDS1853_9" }, { "dataset_id": "GDS1853", "description": "1 wk", "sample_id": [ "GSM29019", "GSM29025", "GSM29031" ], "type": "time", "id": "GDS1853_10" }, { "dataset_id": "GDS1853", "description": "2 wk", "sample_id": [ "GSM29020", "GSM29026", "GSM29032" ], "type": "time", "id": "GDS1853_11" }, { "dataset_id": "GDS1853", "description": "4 wk", "sample_id": [ "GSM29021", "GSM29027", "GSM29033" ], "type": "time", "id": "GDS1853_12" }, { "dataset_id": "GDS1853", "description": "6 wk", "sample_id": [ "GSM29022", "GSM29028", "GSM29034" ], "type": "time", "id": "GDS1853_13" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1853", "version": 1.0, "instances": "19", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1853.tab", "compression": "gz" } ], [ [ "GDS1854.tab" ], { "title": "Postnatal day 7 and adult cerebellum: glycoconjugate expression profile", "description": "Analysis of cerebellums of postnatal day 7 (P7) and adult animals using an array focusing on glycoconjugates. P7 was chosen for comparison as many differentiation events are peaking at this time. Glycoconjugates are widely distributed throughout the CNS and play an essential role in its development.", "type": "Expression profiling by array", "pubmed_id": "15923150", "platform": "GPL1420", "platform_organism": [ "Homo sapiens", "Mus musculus" ], "platform_technology_type": "spotted oligonucleotide", "feature_count": "4682", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1712", "order": "ordered", "update_date": "Jan 26 2007", "subsets": [ { "dataset_id": "GDS1854", "description": "postnatal day 7", "sample_id": [ "GSM29635", "GSM29636", "GSM29637" ], "type": "age", "id": "GDS1854_1" }, { "dataset_id": "GDS1854", "description": "adult", "sample_id": [ "GSM29632", "GSM29633", "GSM29634" ], "type": "age", "id": "GDS1854_2" } ], "taxid": "10090", "genes": 1834, "aggregation_function": "mean", "name": "GDS1854", "version": 1.0, "instances": "6", "variables": 1836, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1854.tab", "compression": "gz" } ], [ [ "GDS1855.tab" ], { "title": "Four-amino analog of tetrahydrobiopterin effect on cardiac allografts", "description": "Analysis of cardiac allografts from transplant recipients treated with four-amino analog of tetrahydrobiopterin (ABH4), a nitric oxide synthase inhibitor shown to prolong allograft survival. The effect of tetrahydrobiopterin (BH4), N6-(iminoethyl)-L-lysine (L-NIL), and cyclosporin A also examined.", "type": "Expression profiling by array", "pubmed_id": "16495807", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1809", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1855", "description": "allogenic", "sample_id": [ "GSM31169" ], "type": "genotype/variation", "id": "GDS1855_1" }, { "dataset_id": "GDS1855", "description": "isogenic", "sample_id": [ "GSM31167", "GSM31168", "GSM31170", "GSM31171", "GSM31172" ], "type": "genotype/variation", "id": "GDS1855_2" }, { "dataset_id": "GDS1855", "description": "untreated", "sample_id": [ "GSM31169", "GSM31172" ], "type": "agent", "id": "GDS1855_3" }, { "dataset_id": "GDS1855", "description": "BH4", "sample_id": [ "GSM31168" ], "type": "agent", "id": "GDS1855_4" }, { "dataset_id": "GDS1855", "description": "cyclosporin A", "sample_id": [ "GSM31170" ], "type": "agent", "id": "GDS1855_5" }, { "dataset_id": "GDS1855", "description": "L-NIL", "sample_id": [ "GSM31171" ], "type": "agent", "id": "GDS1855_6" }, { "dataset_id": "GDS1855", "description": "ABH4", "sample_id": [ "GSM31167" ], "type": "agent", "id": "GDS1855_7" }, { "dataset_id": "GDS1855", "description": "control", "sample_id": [ "GSM31169", "GSM31172" ], "type": "other", "id": "GDS1855_8" }, { "dataset_id": "GDS1855", "description": "NOS stimulator", "sample_id": [ "GSM31168" ], "type": "other", "id": "GDS1855_9" }, { "dataset_id": "GDS1855", "description": "NOS inhibitor", "sample_id": [ "GSM31167", "GSM31170", "GSM31171" ], "type": "other", "id": "GDS1855_10" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1855", "version": 1.0, "instances": "6", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1855.tab", "compression": "gz" } ], [ [ "GDS1857.tab" ], { "title": "Rheumatoid arthritis: synovial tissues", "description": "Expression profiling of synovial tissues of patients with rheumatoid arthritis (RA). RA is a chronic inflammatory disease characterized by pain, stiffness, swelling, and destruction of joints. Results provide insight into the pathogenesis of RA.", "type": "Expression profiling by array", "pubmed_id": "20858714", "platform": "GPL1740", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16128", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2053", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1857", "description": "normal", "sample_id": [ "GSM37430", "GSM37431", "GSM37432", "GSM37433" ], "type": "disease state", "id": "GDS1857_1" }, { "dataset_id": "GDS1857", "description": "rheumatoid arthritis", "sample_id": [ "GSM37434", "GSM37435", "GSM37436", "GSM37437" ], "type": "disease state", "id": "GDS1857_2" } ], "taxid": "9606", "genes": 14299, "aggregation_function": "mean", "name": "GDS1857", "version": 1.0, "instances": "8", "variables": 14301, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1857.tab", "compression": "gz" } ], [ [ "GDS1858.tab" ], { "title": "Various miRNA transfections: time course", "description": "Analysis of HeLa cells at 12 or 24 hours after transfection with wild type or mutant miR-1 or miR-124. miR-1 is preferentially expressed in heart and skeletal muscle, while miR-124 is preferentially expressed in brain. Results suggest that metazoan miRNAs can reduce the levels of target transcripts.", "type": "Expression profiling by array", "pubmed_id": "15685193", "platform": "GPL1749", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23880", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "log10 ratio", "reference_series": "GSE2075", "order": "none", "update_date": "Feb 01 2007", "subsets": [ { "dataset_id": "GDS1858", "description": "wild type miR-1", "sample_id": [ "GSM37598", "GSM37599" ], "type": "agent", "id": "GDS1858_1" }, { "dataset_id": "GDS1858", "description": "miR-124mut5-6", "sample_id": [ "GSM37606", "GSM37607" ], "type": "agent", "id": "GDS1858_2" }, { "dataset_id": "GDS1858", "description": "miR-124mut9-10", "sample_id": [ "GSM37608", "GSM37609" ], "type": "agent", "id": "GDS1858_3" }, { "dataset_id": "GDS1858", "description": "wild type miR-124", "sample_id": [ "GSM37600", "GSM37601" ], "type": "agent", "id": "GDS1858_4" }, { "dataset_id": "GDS1858", "description": "chimera_miR-1-124", "sample_id": [ "GSM37602", "GSM37603" ], "type": "agent", "id": "GDS1858_5" }, { "dataset_id": "GDS1858", "description": "chimera_miR-124-1", "sample_id": [ "GSM37604", "GSM37605" ], "type": "agent", "id": "GDS1858_6" }, { "dataset_id": "GDS1858", "description": "miR373/hes3", "sample_id": [ "GSM37610", "GSM37611" ], "type": "agent", "id": "GDS1858_7" }, { "dataset_id": "GDS1858", "description": "12 h", "sample_id": [ "GSM37598", "GSM37600", "GSM37602", "GSM37604", "GSM37606", "GSM37608", "GSM37610" ], "type": "time", "id": "GDS1858_8" }, { "dataset_id": "GDS1858", "description": "24 h", "sample_id": [ "GSM37599", "GSM37601", "GSM37603", "GSM37605", "GSM37607", "GSM37609", "GSM37611" ], "type": "time", "id": "GDS1858_9" } ], "taxid": "9606", "genes": 20360, "aggregation_function": "mean", "name": "GDS1858", "version": 1.0, "instances": "14", "variables": 20363, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1858.tab", "compression": "gz" } ], [ [ "GDS186.tab" ], { "title": "Progesterone effects on uterus time course", "description": "Analysis of effects of progesterone on uterus tissue gene expression. 14 days after ovariectomy, mice injected subcutaneously with progesterone in sesame oil. Uterine horns removed for analysis at several time points up to 24 hours after injection.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE6440", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS186", "description": "0 h", "sample_id": [ "GSM3053", "GSM3058" ], "type": "time", "id": "GDS186_1" }, { "dataset_id": "GDS186", "description": "1 h", "sample_id": [ "GSM3054" ], "type": "time", "id": "GDS186_2" }, { "dataset_id": "GDS186", "description": "3 h", "sample_id": [ "GSM3055" ], "type": "time", "id": "GDS186_3" }, { "dataset_id": "GDS186", "description": "6 h", "sample_id": [ "GSM3056", "GSM3059" ], "type": "time", "id": "GDS186_4" }, { "dataset_id": "GDS186", "description": "9 h", "sample_id": [ "GSM3057" ], "type": "time", "id": "GDS186_5" }, { "dataset_id": "GDS186", "description": "12 h", "sample_id": [ "GSM3060" ], "type": "time", "id": "GDS186_6" }, { "dataset_id": "GDS186", "description": "15 h", "sample_id": [ "GSM3061" ], "type": "time", "id": "GDS186_7" }, { "dataset_id": "GDS186", "description": "18 h", "sample_id": [ "GSM3062" ], "type": "time", "id": "GDS186_8" }, { "dataset_id": "GDS186", "description": "24 h", "sample_id": [ "GSM3063" ], "type": "time", "id": "GDS186_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS186", "version": 1.0, "instances": "11", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS186.tab", "compression": "gz" } ], [ [ "GDS1862.tab" ], { "title": "Adrenalectomized mice skeletal muscle response to cortisol: time course (MG-U74A)", "description": "Expression profiling of gastrocnemius muscle of adrenalectomized C57BL6 males at 3 and 24 hours following intraperitoneal injection of cortisol. Results compared with those from SAGE (GSE2122) to assess the reproducibility of SAGE experiments.", "type": "Expression profiling by array", "pubmed_id": "15716308", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2121", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1862", "description": "control", "sample_id": [ "GSM38209" ], "type": "protocol", "id": "GDS1862_1" }, { "dataset_id": "GDS1862", "description": "adrenalectomized", "sample_id": [ "GSM38111", "GSM38210", "GSM38211" ], "type": "protocol", "id": "GDS1862_2" }, { "dataset_id": "GDS1862", "description": "untreated", "sample_id": [ "GSM38209", "GSM38210" ], "type": "agent", "id": "GDS1862_3" }, { "dataset_id": "GDS1862", "description": "cortisol", "sample_id": [ "GSM38111", "GSM38211" ], "type": "agent", "id": "GDS1862_4" }, { "dataset_id": "GDS1862", "description": "control", "sample_id": [ "GSM38209", "GSM38210" ], "type": "time", "id": "GDS1862_5" }, { "dataset_id": "GDS1862", "description": "3 h", "sample_id": [ "GSM38211" ], "type": "time", "id": "GDS1862_6" }, { "dataset_id": "GDS1862", "description": "24 h", "sample_id": [ "GSM38111" ], "type": "time", "id": "GDS1862_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1862", "version": 1.0, "instances": "4", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1862.tab", "compression": "gz" } ], [ [ "GDS1864.tab" ], { "title": "Antiepileptic drugs levetiracetam and phenytoin effect on the brain", "description": "Analysis of the brainstem, frontal cortex, and hippocampus of animals chronically treated for 90 days with levetiracetam or phenytoin. Levetiracetam inhibits epileptogenesis in the kindling model of epilepsy. Phenytoin's antiepileptic activity involves the inhibition of sodium channels.", "type": "Expression profiling by array", "pubmed_id": "20345932", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "62", "value_type": "count", "reference_series": "GSE2880", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1864", "description": "brainstem", "sample_id": [ "GSM53412", "GSM53413", "GSM53414", "GSM53415", "GSM53416", "GSM53417", "GSM53418", "GSM53426", "GSM53427", "GSM53428", "GSM53429", "GSM53430", "GSM53431", "GSM53432", "GSM53440", "GSM53441", "GSM53442", "GSM53443", "GSM53444", "GSM53445", "GSM53446" ], "type": "tissue", "id": "GDS1864_1" }, { "dataset_id": "GDS1864", "description": "hippocampus", "sample_id": [ "GSM53419", "GSM53420", "GSM53421", "GSM53422", "GSM53423", "GSM53424", "GSM53425", "GSM53433", "GSM53434", "GSM53435", "GSM53436", "GSM53437", "GSM53438", "GSM53439", "GSM53447", "GSM53448", "GSM53449", "GSM53450", "GSM53451", "GSM53452", "GSM53453" ], "type": "tissue", "id": "GDS1864_2" }, { "dataset_id": "GDS1864", "description": "frontal cortex", "sample_id": [ "GSM53454", "GSM53455", "GSM53456", "GSM53457", "GSM53458", "GSM53459", "GSM53460", "GSM53461", "GSM53462", "GSM53463", "GSM53464", "GSM53465", "GSM53466", "GSM53467", "GSM53468", "GSM53469", "GSM53470", "GSM53471", "GSM53472", "GSM53473" ], "type": "tissue", "id": "GDS1864_3" }, { "dataset_id": "GDS1864", "description": "control", "sample_id": [ "GSM53440", "GSM53441", "GSM53442", "GSM53443", "GSM53444", "GSM53445", "GSM53446", "GSM53447", "GSM53448", "GSM53449", "GSM53450", "GSM53451", "GSM53452", "GSM53453", "GSM53468", "GSM53469", "GSM53470", "GSM53471", "GSM53472", "GSM53473" ], "type": "agent", "id": "GDS1864_4" }, { "dataset_id": "GDS1864", "description": "levetiracetam", "sample_id": [ "GSM53426", "GSM53427", "GSM53428", "GSM53429", "GSM53430", "GSM53431", "GSM53432", "GSM53433", "GSM53434", "GSM53435", "GSM53436", "GSM53437", "GSM53438", "GSM53439", "GSM53454", "GSM53455", "GSM53456", "GSM53457", "GSM53458", "GSM53459", "GSM53460" ], "type": "agent", "id": "GDS1864_5" }, { "dataset_id": "GDS1864", "description": "phenytoin", "sample_id": [ "GSM53412", "GSM53413", "GSM53414", "GSM53415", "GSM53416", "GSM53417", "GSM53418", "GSM53419", "GSM53420", "GSM53421", "GSM53422", "GSM53423", "GSM53424", "GSM53425", "GSM53461", "GSM53462", "GSM53463", "GSM53464", "GSM53465", "GSM53466", "GSM53467" ], "type": "agent", "id": "GDS1864_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1864", "version": 1.0, "instances": "62", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1864.tab", "compression": "gz" } ], [ [ "GDS1865.tab" ], { "title": "Chondrocyte differentiation: time course", "description": "Analysis of micromass cultures derived from limb bud mesenchymal cells and cultured for 15 days in differentiating conditions (beta-glycerophosphate and ascorbic acid). Cultures examined every 3 days, up to day 15. Results provide insight into the mechanisms regulating chondrocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "16135533", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2154", "order": "ordered", "update_date": "Feb 02 2007", "subsets": [ { "dataset_id": "GDS1865", "description": "3 d", "sample_id": [ "GSM38911", "GSM38916", "GSM38921" ], "type": "time", "id": "GDS1865_1" }, { "dataset_id": "GDS1865", "description": "6 d", "sample_id": [ "GSM38912", "GSM38917", "GSM38922" ], "type": "time", "id": "GDS1865_2" }, { "dataset_id": "GDS1865", "description": "9 d", "sample_id": [ "GSM38913", "GSM38923", "GSM38926" ], "type": "time", "id": "GDS1865_3" }, { "dataset_id": "GDS1865", "description": "12 d", "sample_id": [ "GSM38914", "GSM38919", "GSM38924" ], "type": "time", "id": "GDS1865_4" }, { "dataset_id": "GDS1865", "description": "15 d", "sample_id": [ "GSM38915", "GSM38920", "GSM38925" ], "type": "time", "id": "GDS1865_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1865", "version": 1.0, "instances": "15", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1865.tab", "compression": "gz" } ], [ [ "GDS1869.tab" ], { "title": "Heregulin and forskolin mitogenic effect on cultured Schwann cells", "description": "Analysis of passage 1 and passage 3 Schwann cell cultures obtained from four donors and maintained in the presence of the heregulin and forskolin. Heregulin and forskolin synergistically drive Schwann cell proliferation in vitro.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4030", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1869", "description": "passage 1", "sample_id": [ "GSM92231", "GSM92232", "GSM92233", "GSM92234" ], "type": "growth protocol", "id": "GDS1869_1" }, { "dataset_id": "GDS1869", "description": "passage 3", "sample_id": [ "GSM92235", "GSM92236", "GSM92237", "GSM92238" ], "type": "growth protocol", "id": "GDS1869_2" }, { "dataset_id": "GDS1869", "description": "donor 317", "sample_id": [ "GSM92231", "GSM92235" ], "type": "individual", "id": "GDS1869_3" }, { "dataset_id": "GDS1869", "description": "donor 329", "sample_id": [ "GSM92232", "GSM92236" ], "type": "individual", "id": "GDS1869_4" }, { "dataset_id": "GDS1869", "description": "donor 330", "sample_id": [ "GSM92233", "GSM92237" ], "type": "individual", "id": "GDS1869_5" }, { "dataset_id": "GDS1869", "description": "donor 351", "sample_id": [ "GSM92234", "GSM92238" ], "type": "individual", "id": "GDS1869_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1869", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1869.tab", "compression": "gz" } ], [ [ "GDS187.tab" ], { "title": "Progesterone and Hoxa-10 relationship", "description": "Hoxa-10 +/+ and Hoxa-10 -/- littermates injected 14 days after ovariectomy with either progesterone in sesame oil, or just sesame oil. Uterine horns removed for analysis 6 hours after injection.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE6439", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS187", "description": "wildtype, Hoxa-10 +/+", "sample_id": [ "GSM3041", "GSM3042", "GSM3043", "GSM3044", "GSM3045", "GSM3046" ], "type": "strain", "id": "GDS187_1" }, { "dataset_id": "GDS187", "description": "mutant, Hoxa-10 -/-", "sample_id": [ "GSM3047", "GSM3048", "GSM3049", "GSM3050", "GSM3051", "GSM3052" ], "type": "strain", "id": "GDS187_2" }, { "dataset_id": "GDS187", "description": "progesterone", "sample_id": [ "GSM3041", "GSM3042", "GSM3043", "GSM3047", "GSM3048", "GSM3049" ], "type": "agent", "id": "GDS187_3" }, { "dataset_id": "GDS187", "description": "control", "sample_id": [ "GSM3044", "GSM3045", "GSM3046", "GSM3050", "GSM3051", "GSM3052" ], "type": "agent", "id": "GDS187_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS187", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS187.tab", "compression": "gz" } ], [ [ "GDS1870.tab" ], { "title": "Adrenalectomized liver at light and dark periods of the circadian cycle", "description": "Expression profiling of livers of adrenalectomized C57BL/6 males 2 hours into the light or dark periods of a 12:12 hour light cycle. Results identify genes regulated by endogenous glucocorticoids in a circadian manner.", "type": "Expression profiling by array", "pubmed_id": "16303750", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2162", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1870", "description": "sham", "sample_id": [ "GSM38982", "GSM38983" ], "type": "protocol", "id": "GDS1870_1" }, { "dataset_id": "GDS1870", "description": "adrenalectomized", "sample_id": [ "GSM38984", "GSM38985" ], "type": "protocol", "id": "GDS1870_2" }, { "dataset_id": "GDS1870", "description": "zeitgeber time 2", "sample_id": [ "GSM38982", "GSM38984" ], "type": "time", "id": "GDS1870_3" }, { "dataset_id": "GDS1870", "description": "zeitgeber time 14", "sample_id": [ "GSM38983", "GSM38985" ], "type": "time", "id": "GDS1870_4" }, { "dataset_id": "GDS1870", "description": "light", "sample_id": [ "GSM38982", "GSM38984" ], "type": "agent", "id": "GDS1870_5" }, { "dataset_id": "GDS1870", "description": "dark", "sample_id": [ "GSM38983", "GSM38985" ], "type": "agent", "id": "GDS1870_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1870", "version": 1.0, "instances": "4", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1870.tab", "compression": "gz" } ], [ [ "GDS1871.tab" ], { "title": "Interleukin-10 deficiency model of inflammatory bowel disease", "description": "Analysis of colons of C3H/HeJBir and C57BL/6J strains following interleukin-10 (IL-10) gene disruption. IL-10 disruption leads to colitis in C3H/HeJBir strain but not in C57BL/6J. Results used to reduce the number of candidate genes associated with colitogenic quantitative trait loci regions.", "type": "Expression profiling by array", "pubmed_id": "16705022", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2172", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1871", "description": "C57BL 6J", "sample_id": [ "GSM39288", "GSM39289", "GSM39290", "GSM39291" ], "type": "strain", "id": "GDS1871_1" }, { "dataset_id": "GDS1871", "description": "C3H HeJBir", "sample_id": [ "GSM39294", "GSM39295", "GSM39296", "GSM39297" ], "type": "strain", "id": "GDS1871_2" }, { "dataset_id": "GDS1871", "description": "control", "sample_id": [ "GSM39288", "GSM39290", "GSM39295", "GSM39296" ], "type": "genotype/variation", "id": "GDS1871_3" }, { "dataset_id": "GDS1871", "description": "IL-10 deficient", "sample_id": [ "GSM39289", "GSM39291", "GSM39294", "GSM39297" ], "type": "genotype/variation", "id": "GDS1871_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1871", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1871.tab", "compression": "gz" } ], [ [ "GDS1872.tab" ], { "title": "CCAAT/enhancer-binding proteins C/EBP alpha, beta, delta, and epsilon induction", "description": "Analysis of NIH 3T3 cells following induction of CCAAT/enhancer-binding protein (C/EBP) alpha, beta, delta, or epsilon from zinc inducible expression vectors. The C/EBP family of transcription factors regulate growth and differentiation in numerous cell types. Results identify C/EBP targets.", "type": "Expression profiling by array", "pubmed_id": "15985538", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2188", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1872", "description": "vector control", "sample_id": [ "GSM39786", "GSM39787", "GSM39788" ], "type": "agent", "id": "GDS1872_1" }, { "dataset_id": "GDS1872", "description": "C EBP alpha", "sample_id": [ "GSM39789", "GSM39790", "GSM39791" ], "type": "agent", "id": "GDS1872_2" }, { "dataset_id": "GDS1872", "description": "C EBP beta", "sample_id": [ "GSM39792", "GSM39793", "GSM39794" ], "type": "agent", "id": "GDS1872_3" }, { "dataset_id": "GDS1872", "description": "C EBP delta", "sample_id": [ "GSM39795", "GSM39796", "GSM39797" ], "type": "agent", "id": "GDS1872_4" }, { "dataset_id": "GDS1872", "description": "C EBP epsilon", "sample_id": [ "GSM39798", "GSM39799", "GSM39800" ], "type": "agent", "id": "GDS1872_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1872", "version": 1.0, "instances": "15", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1872.tab", "compression": "gz" } ], [ [ "GDS1873.tab" ], { "title": "Antiestrogen and aromatase inhibitor effect on breast cancer cells", "description": "Analysis of estrogen receptor positive, aromatase transfected MCF-7 cells after treatment with an antiestrogen (AE) or an aromatase inhibitor (AI). AEs and AIs are used to treat estrogen-dependent breast cancer. Cells also treated with androgen which is converted to estrogen by aromatase.", "type": "Expression profiling by array", "pubmed_id": "15831674", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2225", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS1873", "description": "untreated", "sample_id": [ "GSM40787", "GSM40788", "GSM40789" ], "type": "agent", "id": "GDS1873_1" }, { "dataset_id": "GDS1873", "description": "androgen", "sample_id": [ "GSM40775", "GSM40776", "GSM40777" ], "type": "agent", "id": "GDS1873_2" }, { "dataset_id": "GDS1873", "description": "estrogen", "sample_id": [ "GSM40790", "GSM40791", "GSM40792" ], "type": "agent", "id": "GDS1873_3" }, { "dataset_id": "GDS1873", "description": "androgen and tamoxifen", "sample_id": [ "GSM40784", "GSM40785", "GSM40786" ], "type": "agent", "id": "GDS1873_4" }, { "dataset_id": "GDS1873", "description": "androgen and anastrozole", "sample_id": [ "GSM40778", "GSM40779", "GSM40780" ], "type": "agent", "id": "GDS1873_5" }, { "dataset_id": "GDS1873", "description": "androgen and letrozole", "sample_id": [ "GSM40781", "GSM40782", "GSM40783" ], "type": "agent", "id": "GDS1873_6" }, { "dataset_id": "GDS1873", "description": "control", "sample_id": [ "GSM40787", "GSM40788", "GSM40789" ], "type": "other", "id": "GDS1873_7" }, { "dataset_id": "GDS1873", "description": "antiestrogen treatment", "sample_id": [ "GSM40784", "GSM40785", "GSM40786" ], "type": "other", "id": "GDS1873_8" }, { "dataset_id": "GDS1873", "description": "aromatase inhibition", "sample_id": [ "GSM40778", "GSM40779", "GSM40780", "GSM40781", "GSM40782", "GSM40783" ], "type": "other", "id": "GDS1873_9" }, { "dataset_id": "GDS1873", "description": "hormone treatment", "sample_id": [ "GSM40775", "GSM40776", "GSM40777", "GSM40790", "GSM40791", "GSM40792" ], "type": "other", "id": "GDS1873_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1873", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1873.tab", "compression": "gz" } ], [ [ "GDS1874.tab" ], { "title": "Integrin beta-6 deficiency model of emphysema: alveolar macrophage", "description": "Analysis of alveolar macrophages of integrin beta-6 (Itgb6) deficient animals treated with doxycycline. Itgb6 mutants develop emphysema. Effect of TGFbeta transgene induction to suppress the effect of the Itgb6 mutation also examined.", "type": "Expression profiling by array", "pubmed_id": "16166618", "platform": "GPL1792", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "17225", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log ratio", "reference_series": "GSE2255", "order": "none", "update_date": "Feb 08 2007", "subsets": [ { "dataset_id": "GDS1874", "description": "wild type", "sample_id": [ "GSM41461", "GSM41465", "GSM41466", "GSM41469", "GSM41470" ], "type": "genotype/variation", "id": "GDS1874_1" }, { "dataset_id": "GDS1874", "description": "Itgb6 -/-", "sample_id": [ "GSM41459", "GSM41460", "GSM41464", "GSM41467", "GSM41468" ], "type": "genotype/variation", "id": "GDS1874_2" }, { "dataset_id": "GDS1874", "description": "Itgb6 -/-, TGFbeta+", "sample_id": [ "GSM41457", "GSM41458", "GSM41462", "GSM41463", "GSM41471" ], "type": "genotype/variation", "id": "GDS1874_3" } ], "taxid": "10090", "genes": 16114, "aggregation_function": "mean", "name": "GDS1874", "version": 1.0, "instances": "15", "variables": 16116, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1874.tab", "compression": "gz" } ], [ [ "GDS1875.tab" ], { "title": "Host cell response to HIV-1 Vpr-induced cell cycle arrest: time course", "description": "Analysis of cell lines expressing wild-type or mutant HIV-1 Vpr protein at various timepoints following doxycycline induction. Vpr advances HIV pathogenesis by inhibiting the cell cycle at G2/M. Results identify changes in cellular gene expression associated with Vpr-mediated cell cycle arrest.", "type": "Expression profiling by array", "pubmed_id": "16103188", "platform": "GPL1528", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22242", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "87", "value_type": "log2 ratio", "reference_series": "GSE2296", "order": "none", "update_date": "Apr 26 2006", "subsets": [ { "dataset_id": "GDS1875", "description": "doxycycline", "sample_id": [ "GSM41860", "GSM41861", "GSM41862", "GSM41863", "GSM41864", "GSM41865", "GSM41866", "GSM41867", "GSM41868", "GSM41869", "GSM41871", "GSM41872", "GSM41873", "GSM41875", "GSM41876", "GSM41877", "GSM41878", "GSM41879", "GSM41880", "GSM41881", "GSM41882", "GSM41883", "GSM41884", "GSM41885", "GSM41886", "GSM41890", "GSM41893", "GSM41894", "GSM41895", "GSM41896", "GSM41897", "GSM41898", "GSM41899", "GSM41900", "GSM41901", "GSM41902", "GSM41903", "GSM41904", "GSM41905", "GSM41906", "GSM41907", "GSM41908", "GSM41909", "GSM41910", "GSM41911", "GSM41912", "GSM41913", "GSM41915", "GSM41916", "GSM41917", "GSM41918", "GSM41919", "GSM41920", "GSM41921", "GSM41922", "GSM41923", "GSM41924", "GSM41925", "GSM41926", "GSM41927", "GSM41928", "GSM41929", "GSM41930", "GSM41931", "GSM41932", "GSM41933", "GSM41934", "GSM41936", "GSM41937", "GSM41938", "GSM41939", "GSM41940", "GSM41941", "GSM41942", "GSM41943", "GSM41944", "GSM41945" ], "type": "agent", "id": "GDS1875_1" }, { "dataset_id": "GDS1875", "description": "uninduced", "sample_id": [ "GSM41859", "GSM41870", "GSM41874", "GSM41887", "GSM41888", "GSM41889", "GSM41891", "GSM41892", "GSM41914", "GSM41935" ], "type": "agent", "id": "GDS1875_2" }, { "dataset_id": "GDS1875", "description": "wildtype Vpr transfected", "sample_id": [ "GSM41887", "GSM41890", "GSM41893", "GSM41896", "GSM41899", "GSM41902", "GSM41905", "GSM41908", "GSM41911", "GSM41914", "GSM41917", "GSM41920", "GSM41923", "GSM41925", "GSM41927", "GSM41929", "GSM41931", "GSM41933", "GSM41935", "GSM41936", "GSM41937", "GSM41938", "GSM41939", "GSM41940", "GSM41941", "GSM41942", "GSM41943", "GSM41944", "GSM41945" ], "type": "cell line", "id": "GDS1875_3" }, { "dataset_id": "GDS1875", "description": "mutant F72A/R73A Vpr transfected", "sample_id": [ "GSM41869", "GSM41874", "GSM41876", "GSM41877", "GSM41878", "GSM41879", "GSM41880", "GSM41881", "GSM41882", "GSM41889", "GSM41892", "GSM41895", "GSM41898", "GSM41901", "GSM41904", "GSM41907", "GSM41910", "GSM41913", "GSM41916", "GSM41919", "GSM41922", "GSM41924", "GSM41926", "GSM41928", "GSM41930", "GSM41932", "GSM41934" ], "type": "cell line", "id": "GDS1875_4" }, { "dataset_id": "GDS1875", "description": "mutant R80A Vpr transfected", "sample_id": [ "GSM41859", "GSM41860", "GSM41861", "GSM41862", "GSM41863", "GSM41864", "GSM41865", "GSM41866", "GSM41867", "GSM41868", "GSM41870", "GSM41871", "GSM41872", "GSM41873", "GSM41875", "GSM41883", "GSM41884", "GSM41885", "GSM41886", "GSM41888", "GSM41891", "GSM41894", "GSM41897", "GSM41900", "GSM41903", "GSM41906", "GSM41909", "GSM41912", "GSM41915", "GSM41918", "GSM41921" ], "type": "cell line", "id": "GDS1875_5" }, { "dataset_id": "GDS1875", "description": "0 h", "sample_id": [ "GSM41874", "GSM41889", "GSM41892", "GSM41859", "GSM41870", "GSM41888", "GSM41891", "GSM41887", "GSM41914", "GSM41935" ], "type": "time", "id": "GDS1875_6" }, { "dataset_id": "GDS1875", "description": "1 h", "sample_id": [ "GSM41876", "GSM41895", "GSM41898", "GSM41860", "GSM41871", "GSM41875", "GSM41894", "GSM41897", "GSM41890", "GSM41917", "GSM41936" ], "type": "time", "id": "GDS1875_7" }, { "dataset_id": "GDS1875", "description": "2 h", "sample_id": [ "GSM41877", "GSM41901", "GSM41904", "GSM41861", "GSM41872", "GSM41900", "GSM41893", "GSM41920", "GSM41937" ], "type": "time", "id": "GDS1875_8" }, { "dataset_id": "GDS1875", "description": "4 h", "sample_id": [ "GSM41878", "GSM41907", "GSM41910", "GSM41862", "GSM41873", "GSM41903", "GSM41896", "GSM41923", "GSM41938" ], "type": "time", "id": "GDS1875_9" }, { "dataset_id": "GDS1875", "description": "6 h", "sample_id": [ "GSM41879", "GSM41913", "GSM41916", "GSM41863", "GSM41883", "GSM41906", "GSM41899", "GSM41925", "GSM41939" ], "type": "time", "id": "GDS1875_10" }, { "dataset_id": "GDS1875", "description": "8 h", "sample_id": [ "GSM41880", "GSM41919", "GSM41922", "GSM41864", "GSM41884", "GSM41909", "GSM41912", "GSM41902", "GSM41927", "GSM41940" ], "type": "time", "id": "GDS1875_11" }, { "dataset_id": "GDS1875", "description": "12 h", "sample_id": [ "GSM41881", "GSM41924", "GSM41926", "GSM41865", "GSM41885", "GSM41915", "GSM41905", "GSM41929", "GSM41941" ], "type": "time", "id": "GDS1875_12" }, { "dataset_id": "GDS1875", "description": "16 h", "sample_id": [ "GSM41869", "GSM41928", "GSM41930", "GSM41866", "GSM41886", "GSM41918", "GSM41908", "GSM41931", "GSM41942", "GSM41945" ], "type": "time", "id": "GDS1875_13" }, { "dataset_id": "GDS1875", "description": "24 h", "sample_id": [ "GSM41882", "GSM41932", "GSM41934", "GSM41867", "GSM41868", "GSM41921", "GSM41911", "GSM41933", "GSM41943", "GSM41944" ], "type": "time", "id": "GDS1875_14" } ], "taxid": "9606", "genes": 19272, "aggregation_function": "mean", "name": "GDS1875", "version": 1.0, "instances": "87", "variables": 19276, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1875.tab", "compression": "gz" } ], [ [ "GDS1877.tab" ], { "title": "slbo mutant migratory cells of the ovary", "description": "Analysis of slbo mutant border and centripetal migratory cells in the ovary. SLBO, a C/EBP family transcriptional activator, is required for the switch from stationary to migratory behavior. Results identify genes involved in cell migration and downstream targets of SLBO.", "type": "Expression profiling by array", "pubmed_id": "16580993", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4235", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS1877", "description": "non-migratory cells", "sample_id": [ "GSM96597", "GSM96598", "GSM96599", "GSM96604", "GSM96605", "GSM96606" ], "type": "cell type", "id": "GDS1877_1" }, { "dataset_id": "GDS1877", "description": "migratory cells", "sample_id": [ "GSM96593", "GSM96595", "GSM96596", "GSM96600", "GSM96602", "GSM96603" ], "type": "cell type", "id": "GDS1877_2" }, { "dataset_id": "GDS1877", "description": "wild type", "sample_id": [ "GSM96593", "GSM96595", "GSM96596", "GSM96597", "GSM96598", "GSM96599" ], "type": "genotype/variation", "id": "GDS1877_3" }, { "dataset_id": "GDS1877", "description": "slbo mutant", "sample_id": [ "GSM96600", "GSM96602", "GSM96603", "GSM96604", "GSM96605", "GSM96606" ], "type": "genotype/variation", "id": "GDS1877_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1877", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1877.tab", "compression": "gz" } ], [ [ "GDS1878.tab" ], { "title": "Myotube response to PGC-1alpha induced mitochondrial biogenesis: time course (MG-U74A)", "description": "Analysis of C2C12 myoblast-derived myotubes transduced with transcriptional coactivator PGC-1alpha to induce mitochondrial proliferation in the muscle cells. Cells examined up to 3 days post-transduction. Results combined with other genome-scale datasets to identify mitochondrial proteins.", "type": "Expression profiling by array", "pubmed_id": "16582907", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4330", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1878", "description": "0 d", "sample_id": [ "GSM98807", "GSM98808", "GSM98809" ], "type": "time", "id": "GDS1878_1" }, { "dataset_id": "GDS1878", "description": "1 d", "sample_id": [ "GSM98810", "GSM98811", "GSM98812", "GSM98813", "GSM98814", "GSM98815" ], "type": "time", "id": "GDS1878_2" }, { "dataset_id": "GDS1878", "description": "2 d", "sample_id": [ "GSM98816", "GSM98817", "GSM98818", "GSM98819", "GSM98820", "GSM98821" ], "type": "time", "id": "GDS1878_3" }, { "dataset_id": "GDS1878", "description": "3 d", "sample_id": [ "GSM98822", "GSM98823", "GSM98824", "GSM98825", "GSM98826", "GSM98827" ], "type": "time", "id": "GDS1878_4" }, { "dataset_id": "GDS1878", "description": "untreated", "sample_id": [ "GSM98807", "GSM98808", "GSM98809" ], "type": "agent", "id": "GDS1878_5" }, { "dataset_id": "GDS1878", "description": "GFP control", "sample_id": [ "GSM98810", "GSM98811", "GSM98812", "GSM98816", "GSM98817", "GSM98818", "GSM98822", "GSM98823", "GSM98824" ], "type": "agent", "id": "GDS1878_6" }, { "dataset_id": "GDS1878", "description": "PGC-1alpha", "sample_id": [ "GSM98813", "GSM98814", "GSM98815", "GSM98819", "GSM98820", "GSM98821", "GSM98825", "GSM98826", "GSM98827" ], "type": "agent", "id": "GDS1878_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1878", "version": 1.0, "instances": "21", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1878.tab", "compression": "gz" } ], [ [ "GDS1879.tab" ], { "title": "Myotube response to PGC-1alpha induced mitochondrial biogenesis: time course (MG-U74B)", "description": "Analysis of C2C12 myoblast-derived myotubes transduced with transcriptional coactivator PGC-1alpha to induce mitochondrial proliferation in the muscle cells. Cells examined up to 3 days post-transduction. Results combined with other genome-scale datasets to identify mitochondrial proteins.", "type": "Expression profiling by array", "pubmed_id": "16582907", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4330", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1879", "description": "0 d", "sample_id": [ "GSM98828", "GSM98829", "GSM98830" ], "type": "time", "id": "GDS1879_1" }, { "dataset_id": "GDS1879", "description": "1 d", "sample_id": [ "GSM98831", "GSM98832", "GSM98833", "GSM98834", "GSM98835", "GSM98836" ], "type": "time", "id": "GDS1879_2" }, { "dataset_id": "GDS1879", "description": "2 d", "sample_id": [ "GSM98837", "GSM98838", "GSM98839", "GSM98840", "GSM98841", "GSM98842" ], "type": "time", "id": "GDS1879_3" }, { "dataset_id": "GDS1879", "description": "3 d", "sample_id": [ "GSM98843", "GSM98844", "GSM98845", "GSM98846", "GSM98847", "GSM98848" ], "type": "time", "id": "GDS1879_4" }, { "dataset_id": "GDS1879", "description": "GFP control", "sample_id": [ "GSM98831", "GSM98832", "GSM98833", "GSM98837", "GSM98838", "GSM98839", "GSM98843", "GSM98844", "GSM98845" ], "type": "agent", "id": "GDS1879_5" }, { "dataset_id": "GDS1879", "description": "PGC-1alpha", "sample_id": [ "GSM98834", "GSM98835", "GSM98836", "GSM98840", "GSM98841", "GSM98842", "GSM98846", "GSM98847", "GSM98848" ], "type": "agent", "id": "GDS1879_6" }, { "dataset_id": "GDS1879", "description": "untreated", "sample_id": [ "GSM98828", "GSM98829", "GSM98830" ], "type": "agent", "id": "GDS1879_7" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1879", "version": 1.0, "instances": "21", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1879.tab", "compression": "gz" } ], [ [ "GDS1880.tab" ], { "title": "Myotube response to PGC-1alpha induced mitochondrial biogenesis: time course (MG-U74C)", "description": "Analysis of C2C12 myoblast-derived myotubes transduced with transcriptional coactivator PGC-1alpha to induce mitochondrial proliferation in the muscle cells. Cells examined up to 3 days post-transduction. Results combined with other genome-scale datasets to identify mitochondrial proteins.", "type": "Expression profiling by array", "pubmed_id": "16582907", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4330", "order": "none", "update_date": "Feb 07 2007", "subsets": [ { "dataset_id": "GDS1880", "description": "0 d", "sample_id": [ "GSM98849", "GSM98850", "GSM98851" ], "type": "time", "id": "GDS1880_1" }, { "dataset_id": "GDS1880", "description": "1 d", "sample_id": [ "GSM98852", "GSM98853", "GSM98854", "GSM98855", "GSM98856", "GSM98857" ], "type": "time", "id": "GDS1880_2" }, { "dataset_id": "GDS1880", "description": "2 d", "sample_id": [ "GSM98858", "GSM98859", "GSM98860", "GSM98861", "GSM98862", "GSM98863" ], "type": "time", "id": "GDS1880_3" }, { "dataset_id": "GDS1880", "description": "3 d", "sample_id": [ "GSM98864", "GSM98865", "GSM98866", "GSM98867", "GSM98868", "GSM98869" ], "type": "time", "id": "GDS1880_4" }, { "dataset_id": "GDS1880", "description": "untreated", "sample_id": [ "GSM98849", "GSM98850", "GSM98851" ], "type": "agent", "id": "GDS1880_5" }, { "dataset_id": "GDS1880", "description": "GFP control", "sample_id": [ "GSM98852", "GSM98853", "GSM98854", "GSM98858", "GSM98859", "GSM98860", "GSM98864", "GSM98865", "GSM98866" ], "type": "agent", "id": "GDS1880_6" }, { "dataset_id": "GDS1880", "description": "PGC-1alpha", "sample_id": [ "GSM98855", "GSM98856", "GSM98857", "GSM98861", "GSM98862", "GSM98863", "GSM98867", "GSM98868", "GSM98869" ], "type": "agent", "id": "GDS1880_7" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1880", "version": 1.0, "instances": "21", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1880.tab", "compression": "gz" } ], [ [ "GDS1881.tab" ], { "title": "Mono-(2-ethylhexyl) phthalate effect on prepubertal testes: time course", "description": "Analysis of testes of postnatal day 28 animals at various time points up to 12 hrs after acute exposure to mono-(2-ethylhexyl) phthalate. Phthalate plasticizers can damage fetal and prepubertal testis. Results provide insight into mechanisms of prepubertal phthalate-induced testicular injury.", "type": "Expression profiling by array", "pubmed_id": "16809437", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE4514", "order": "none", "update_date": "Feb 08 2007", "subsets": [ { "dataset_id": "GDS1881", "description": "1 h", "sample_id": [ "GSM100955", "GSM100956", "GSM100957", "GSM100969", "GSM100970", "GSM100971" ], "type": "time", "id": "GDS1881_1" }, { "dataset_id": "GDS1881", "description": "2 h", "sample_id": [ "GSM100958", "GSM100959", "GSM100972", "GSM100973", "GSM100974", "GSM100975" ], "type": "time", "id": "GDS1881_2" }, { "dataset_id": "GDS1881", "description": "3 h", "sample_id": [ "GSM100960", "GSM100961", "GSM100962", "GSM100976", "GSM100977", "GSM100978" ], "type": "time", "id": "GDS1881_3" }, { "dataset_id": "GDS1881", "description": "6 h", "sample_id": [ "GSM100963", "GSM100964", "GSM100965", "GSM100979", "GSM100980", "GSM100981" ], "type": "time", "id": "GDS1881_4" }, { "dataset_id": "GDS1881", "description": "12 h", "sample_id": [ "GSM100951", "GSM100952", "GSM100953", "GSM100966", "GSM100967", "GSM100968" ], "type": "time", "id": "GDS1881_5" }, { "dataset_id": "GDS1881", "description": "corn oil control", "sample_id": [ "GSM100951", "GSM100952", "GSM100953", "GSM100955", "GSM100956", "GSM100957", "GSM100958", "GSM100959", "GSM100960", "GSM100961", "GSM100962", "GSM100963", "GSM100964", "GSM100965", "GSM100972" ], "type": "agent", "id": "GDS1881_6" }, { "dataset_id": "GDS1881", "description": "mono-2-ethyl hexyl phthalate", "sample_id": [ "GSM100966", "GSM100967", "GSM100968", "GSM100969", "GSM100970", "GSM100971", "GSM100973", "GSM100974", "GSM100975", "GSM100976", "GSM100977", "GSM100978", "GSM100979", "GSM100980", "GSM100981" ], "type": "agent", "id": "GDS1881_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS1881", "version": 1.0, "instances": "30", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1881.tab", "compression": "gz" } ], [ [ "GDS1882.tab" ], { "title": "Embryonic fibroblast-independent embryonic stem cell differentiation", "description": "Analysis of CGR8 embryoid bodies differentiating for 3 or 10 days. Culturing of most embryonic stem (ES) cells require embryonic fibroblast (MEF) feeder cells which may affect their gene expression profiles. CGR8 cells are MEF-independent and represent a powerful model of ES cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "16270623", "platform": "GPL1942", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "46128", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE2469", "order": "ordered", "update_date": "Feb 08 2007", "subsets": [ { "dataset_id": "GDS1882", "description": "3 d", "sample_id": [ "GSM46993", "GSM46996" ], "type": "time", "id": "GDS1882_1" }, { "dataset_id": "GDS1882", "description": "10 d", "sample_id": [ "GSM46997", "GSM46998" ], "type": "time", "id": "GDS1882_2" } ], "taxid": "10090", "genes": 20759, "aggregation_function": "mean", "name": "GDS1882", "version": 1.0, "instances": "4", "variables": 20761, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1882.tab", "compression": "gz" } ], [ [ "GDS1883.tab" ], { "title": "Sodium tungstate regenerative effect on diabetic pancreas", "description": "Analysis of pancreas of diabetic animals after treatment with sodium tungstate, which induces beta cell mass growth. Diabetes induced by streptozotocin. Results provide insight into the mechanisms underlying the regenerative effect of sodium tungstate on the pancreas of models of diabetes.", "type": "Expression profiling by array", "pubmed_id": "19715561", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE2470", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS1883", "description": "diabetic", "sample_id": [ "GSM46980", "GSM46981", "GSM46982", "GSM46977", "GSM46978", "GSM46979" ], "type": "disease state", "id": "GDS1883_1" }, { "dataset_id": "GDS1883", "description": "healthy", "sample_id": [ "GSM46987", "GSM46988", "GSM46989", "GSM46985", "GSM46990", "GSM46986" ], "type": "disease state", "id": "GDS1883_2" }, { "dataset_id": "GDS1883", "description": "tungstate", "sample_id": [ "GSM46985", "GSM46990", "GSM46986", "GSM46977", "GSM46978", "GSM46979" ], "type": "agent", "id": "GDS1883_3" }, { "dataset_id": "GDS1883", "description": "untreated", "sample_id": [ "GSM46987", "GSM46988", "GSM46989", "GSM46980", "GSM46981", "GSM46982" ], "type": "agent", "id": "GDS1883_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1883", "version": 1.0, "instances": "12", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1883.tab", "compression": "gz" } ], [ [ "GDS1884.tab" ], { "title": "Testes of various subspecies", "description": "Expression profiling of testes from subspecies castaneus, domesticus, musculus, and a strain from Iran (BID).", "type": "Expression profiling by array", "pubmed_id": "16910979", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2471", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1884", "description": "BID", "sample_id": [ "GSM47005", "GSM47006" ], "type": "strain", "id": "GDS1884_1" }, { "dataset_id": "GDS1884", "description": "castaneus", "sample_id": [ "GSM46999", "GSM47000" ], "type": "strain", "id": "GDS1884_2" }, { "dataset_id": "GDS1884", "description": "domesticus", "sample_id": [ "GSM47001", "GSM47002" ], "type": "strain", "id": "GDS1884_3" }, { "dataset_id": "GDS1884", "description": "musculus", "sample_id": [ "GSM47003", "GSM47004" ], "type": "strain", "id": "GDS1884_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1884", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1884.tab", "compression": "gz" } ], [ [ "GDS1886.tab" ], { "title": "Moderate hypothermia effect in vitro", "description": "Analysis of acute monocytic leukemia THP-1 cells exposed to moderate hypothermia (MH) at 32 degrees C for 24 hours. THP-1 cell line is an in vitro system for analyzing the effects of hypothermia. MH has therapeutic applications. Results show substantial changes in gene expression in response to MH.", "type": "Expression profiling by array", "pubmed_id": "16595739", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE4425", "order": "ordered", "update_date": "Feb 08 2007", "subsets": [ { "dataset_id": "GDS1886", "description": "32 degrees C", "sample_id": [ "GSM99697", "GSM99774", "GSM99778", "GSM99781", "GSM99783", "GSM99785", "GSM99787" ], "type": "temperature", "id": "GDS1886_1" }, { "dataset_id": "GDS1886", "description": "37 degrees C", "sample_id": [ "GSM99773", "GSM99775", "GSM99779", "GSM99782", "GSM99784", "GSM99786", "GSM99788" ], "type": "temperature", "id": "GDS1886_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1886", "version": 1.0, "instances": "14", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1886.tab", "compression": "gz" } ], [ [ "GDS1887.tab" ], { "title": "Rectal cancer cells and radiotherapy response", "description": "Analysis of rectal cancer cells from patients prior to preoperative radiotherapy. Response to radiotherapy determined by histopathologic examination of resected specimens. Results identify gene markers for the characterization and prediction of the response to radiotherapy in rectal cancer.", "type": "Expression profiling by array", "pubmed_id": "16585155", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE3493", "order": "none", "update_date": "Apr 05 2006", "subsets": [ { "dataset_id": "GDS1887", "description": "training", "sample_id": [ "GSM79068", "GSM79069", "GSM79070", "GSM79071", "GSM79072", "GSM79075", "GSM79076", "GSM79077", "GSM79078", "GSM79079", "GSM79080", "GSM79081", "GSM79082", "GSM79083", "GSM79084", "GSM79085", "GSM79088", "GSM79089", "GSM79090", "GSM79091", "GSM79092", "GSM79093", "GSM79094", "GSM79095", "GSM79096", "GSM79097", "GSM79098", "GSM79099", "GSM79102", "GSM79104", "GSM79105", "GSM79106", "GSM79107", "GSM79108", "GSM79109" ], "type": "protocol", "id": "GDS1887_1" }, { "dataset_id": "GDS1887", "description": "test", "sample_id": [ "GSM79073", "GSM79074", "GSM79086", "GSM79087", "GSM79100", "GSM79101", "GSM79103", "GSM79110", "GSM79111", "GSM79112", "GSM79113" ], "type": "protocol", "id": "GDS1887_2" }, { "dataset_id": "GDS1887", "description": "non-responder", "sample_id": [ "GSM79076", "GSM79077", "GSM79078", "GSM79079", "GSM79080", "GSM79081", "GSM79082", "GSM79083", "GSM79084", "GSM79085", "GSM79086", "GSM79087", "GSM79088", "GSM79089", "GSM79090", "GSM79091", "GSM79092", "GSM79093", "GSM79094", "GSM79095", "GSM79096", "GSM79097", "GSM79098", "GSM79099", "GSM79100", "GSM79101", "GSM79104", "GSM79105", "GSM79106", "GSM79107", "GSM79108", "GSM79109", "GSM79110", "GSM79111", "GSM79112" ], "type": "disease state", "id": "GDS1887_3" }, { "dataset_id": "GDS1887", "description": "responder", "sample_id": [ "GSM79068", "GSM79069", "GSM79070", "GSM79071", "GSM79072", "GSM79073", "GSM79074", "GSM79075", "GSM79102", "GSM79103", "GSM79113" ], "type": "disease state", "id": "GDS1887_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1887", "version": 1.0, "instances": "46", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1887.tab", "compression": "gz" } ], [ [ "GDS1890.tab" ], { "title": "Hoxc13 overexpression effect on the skin", "description": "Analysis of skins of post-natal day 5 transgenics overexpressing the homeobox (Hox) gene Hoxc13. Hox genes are implicated in hair follicle differentiation, and Hoxc13 overexpression in transgenics leads to hair shaft defects, alopecia, and epidermal abnormalities.", "type": "Expression profiling by array", "pubmed_id": [ "16382673", "16835220" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2374", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1890", "description": "control", "sample_id": [ "GSM44788", "GSM44789", "GSM44790" ], "type": "strain", "id": "GDS1890_1" }, { "dataset_id": "GDS1890", "description": "Hoxc13 transgenic", "sample_id": [ "GSM44791", "GSM44792", "GSM44793" ], "type": "strain", "id": "GDS1890_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1890", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1890.tab", "compression": "gz" } ], [ [ "GDS1891.tab" ], { "title": "Glucosamine and high glucose effect on renal mesangial cells", "description": "Analysis of renal mesangial MES-13 cells treated with high glucose or glucosamine. Mesangial cells play an important role in the development of diabetic glomerulosclerosis and renal failure. Glucosamine and high glucose mimic the hyperglycemic and hemodynamic insults of diabetic kidney disease.", "type": "Expression profiling by array", "pubmed_id": "17178593", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2557", "order": "none", "update_date": "Feb 09 2007", "subsets": [ { "dataset_id": "GDS1891", "description": "control", "sample_id": [ "GSM48385", "GSM48393" ], "type": "agent", "id": "GDS1891_1" }, { "dataset_id": "GDS1891", "description": "25 mM glucose", "sample_id": [ "GSM48387", "GSM48388" ], "type": "agent", "id": "GDS1891_2" }, { "dataset_id": "GDS1891", "description": "1.5 mM glucosamine", "sample_id": [ "GSM48389", "GSM48390" ], "type": "agent", "id": "GDS1891_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1891", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1891.tab", "compression": "gz" } ], [ [ "GDS1892.tab" ], { "title": "TGF-beta1 effect on renal mesangial cells", "description": "Analysis of renal mesangial MES-13 cells following treatment with TGF-beta1. TGF-beta1 has been identified as a mediator of renal hypertrophy and accumulation of extracellular matrix proteins in the diabetic glomerular mesangium.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2558", "order": "none", "update_date": "Feb 09 2007", "subsets": [ { "dataset_id": "GDS1892", "description": "control", "sample_id": [ "GSM48386", "GSM48392" ], "type": "agent", "id": "GDS1892_1" }, { "dataset_id": "GDS1892", "description": "TGF-beta1", "sample_id": [ "GSM48394", "GSM48395" ], "type": "agent", "id": "GDS1892_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1892", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1892.tab", "compression": "gz" } ], [ [ "GDS19.tab" ], { "title": "Nitrogen depletion time course", "description": "Samples grown in minimal medium without amino acids or adenine, low ammonium sulfate and collected at various time points up to 3 days. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL52", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS19", "description": "30 minute", "sample_id": [ "GSM880" ], "type": "time", "id": "GDS19_1" }, { "dataset_id": "GDS19", "description": "1 hour", "sample_id": [ "GSM881" ], "type": "time", "id": "GDS19_2" }, { "dataset_id": "GDS19", "description": "2 hour", "sample_id": [ "GSM882" ], "type": "time", "id": "GDS19_3" }, { "dataset_id": "GDS19", "description": "4 hour", "sample_id": [ "GSM874" ], "type": "time", "id": "GDS19_4" }, { "dataset_id": "GDS19", "description": "8 hour", "sample_id": [ "GSM875" ], "type": "time", "id": "GDS19_5" }, { "dataset_id": "GDS19", "description": "12 hour", "sample_id": [ "GSM876" ], "type": "time", "id": "GDS19_6" }, { "dataset_id": "GDS19", "description": "1 day", "sample_id": [ "GSM877" ], "type": "time", "id": "GDS19_7" }, { "dataset_id": "GDS19", "description": "2 day", "sample_id": [ "GSM878" ], "type": "time", "id": "GDS19_8" }, { "dataset_id": "GDS19", "description": "3 day", "sample_id": [ "GSM879" ], "type": "time", "id": "GDS19_9" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS19", "version": 1.0, "instances": "9", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS19.tab", "compression": "gz" } ], [ [ "GDS1901.tab" ], { "title": "Strains exhibiting low or high freezing in response to fear: amygdala and hippocampus", "description": "Analysis of the amygdalae and hippocampi of strains exhibiting low or high freezing behavior in response to fear. Previous work identified alleles that contribute to the variability in freezing behavior, and the chromosomal location of these alleles.", "type": "Expression profiling by array", "pubmed_id": "18363093", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE4034", "order": "none", "update_date": "Jun 09 2006", "subsets": [ { "dataset_id": "GDS1901", "description": "hippocampus", "sample_id": [ "GSM92409", "GSM92410", "GSM92411", "GSM92412", "GSM92413", "GSM92414", "GSM92415", "GSM92416", "GSM92417", "GSM92418", "GSM92419", "GSM92420" ], "type": "tissue", "id": "GDS1901_1" }, { "dataset_id": "GDS1901", "description": "amygdala", "sample_id": [ "GSM92421", "GSM92422", "GSM92423", "GSM92424", "GSM92425", "GSM92426", "GSM92427", "GSM92428", "GSM92429", "GSM92430", "GSM92432", "GSM92433" ], "type": "tissue", "id": "GDS1901_2" }, { "dataset_id": "GDS1901", "description": "low freezing behavior", "sample_id": [ "GSM92409", "GSM92410", "GSM92411", "GSM92412", "GSM92413", "GSM92414", "GSM92421", "GSM92422", "GSM92423", "GSM92424", "GSM92425", "GSM92426" ], "type": "genotype/variation", "id": "GDS1901_3" }, { "dataset_id": "GDS1901", "description": "high freezing behavior", "sample_id": [ "GSM92415", "GSM92416", "GSM92417", "GSM92418", "GSM92419", "GSM92420", "GSM92427", "GSM92428", "GSM92429", "GSM92430", "GSM92432", "GSM92433" ], "type": "genotype/variation", "id": "GDS1901_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1901", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1901.tab", "compression": "gz" } ], [ [ "GDS1902.tab" ], { "title": "Cyanobacterial metabolite apratoxin A cytotoxic effect on colon adenocarcinoma cells: time course and dose response", "description": "Analysis of colon adenocarcinoma HT29 cells at various time points up to 12 hours following treatment with 2 or 10 nM of the cyanobacterial metabolite apratoxin A. Results provide insight into the molecular mechanisms underlying the cytotoxic effect of apratoxin A on tumor cells.", "type": "Expression profiling by array", "pubmed_id": "16474387", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE2742", "order": "none", "update_date": "Feb 12 2007", "subsets": [ { "dataset_id": "GDS1902", "description": "none", "sample_id": [ "GSM92816", "GSM92817" ], "type": "agent", "id": "GDS1902_1" }, { "dataset_id": "GDS1902", "description": "ethanol control", "sample_id": [ "GSM60127", "GSM60128", "GSM60133", "GSM60134", "GSM60139", "GSM60140" ], "type": "agent", "id": "GDS1902_2" }, { "dataset_id": "GDS1902", "description": "UV", "sample_id": [ "GSM92814", "GSM92815", "GSM92822" ], "type": "agent", "id": "GDS1902_3" }, { "dataset_id": "GDS1902", "description": "hydrogen peroxide", "sample_id": [ "GSM92818", "GSM92819" ], "type": "agent", "id": "GDS1902_4" }, { "dataset_id": "GDS1902", "description": "heat shock", "sample_id": [ "GSM92820", "GSM92821" ], "type": "agent", "id": "GDS1902_5" }, { "dataset_id": "GDS1902", "description": "apratoxin A", "sample_id": [ "GSM60129", "GSM60130", "GSM60131", "GSM60132", "GSM60135", "GSM60136", "GSM60137", "GSM60138", "GSM60141", "GSM60142", "GSM60143", "GSM60144" ], "type": "agent", "id": "GDS1902_6" }, { "dataset_id": "GDS1902", "description": "3 h", "sample_id": [ "GSM60127", "GSM60128", "GSM60129", "GSM60130", "GSM60131", "GSM60132" ], "type": "time", "id": "GDS1902_7" }, { "dataset_id": "GDS1902", "description": "6 h", "sample_id": [ "GSM60133", "GSM60134", "GSM60135", "GSM60136", "GSM60137", "GSM60138" ], "type": "time", "id": "GDS1902_8" }, { "dataset_id": "GDS1902", "description": "12 h", "sample_id": [ "GSM60139", "GSM60140", "GSM60141", "GSM60142", "GSM60143", "GSM60144", "GSM92814", "GSM92815", "GSM92816", "GSM92817", "GSM92818", "GSM92819", "GSM92820", "GSM92821", "GSM92822" ], "type": "time", "id": "GDS1902_9" }, { "dataset_id": "GDS1902", "description": "control", "sample_id": [ "GSM92816", "GSM92817", "GSM60127", "GSM60128", "GSM60133", "GSM60134", "GSM60139", "GSM60140" ], "type": "dose", "id": "GDS1902_10" }, { "dataset_id": "GDS1902", "description": "2 nM", "sample_id": [ "GSM60129", "GSM60130", "GSM60135", "GSM60136", "GSM60141", "GSM60142" ], "type": "dose", "id": "GDS1902_11" }, { "dataset_id": "GDS1902", "description": "10 nM", "sample_id": [ "GSM60131", "GSM60132", "GSM60137", "GSM60138", "GSM60143", "GSM60144" ], "type": "dose", "id": "GDS1902_12" }, { "dataset_id": "GDS1902", "description": "50 J per m2", "sample_id": [ "GSM92814", "GSM92822" ], "type": "dose", "id": "GDS1902_13" }, { "dataset_id": "GDS1902", "description": "200 J per m2", "sample_id": [ "GSM92815" ], "type": "dose", "id": "GDS1902_14" }, { "dataset_id": "GDS1902", "description": "100 uM", "sample_id": [ "GSM92818", "GSM92819" ], "type": "dose", "id": "GDS1902_15" }, { "dataset_id": "GDS1902", "description": "42 degrees C 1 h", "sample_id": [ "GSM92820", "GSM92821" ], "type": "dose", "id": "GDS1902_16" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1902", "version": 1.0, "instances": "27", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1902.tab", "compression": "gz" } ], [ [ "GDS1903.tab" ], { "title": "Classical fear conditioning effect on amygdala and hippocampus", "description": "Comparison of amygdalae and hippocampi of animals subjected to classical fear conditioning (CFC), which consists of a 3-minute exposure to the conditioning chamber, a 30-second exposure to tone, and a 2-second, 1.5-mA footshock. CFC induced greater gene expression changes in the amygdala.", "type": "Expression profiling by array", "pubmed_id": "16547164", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE3963", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1903", "description": "hippocampus", "sample_id": [ "GSM90407", "GSM90408", "GSM90409", "GSM90410", "GSM90411", "GSM90412", "GSM90413", "GSM90414", "GSM90415", "GSM90416", "GSM90417", "GSM90418", "GSM90419", "GSM90420", "GSM90421", "GSM90422", "GSM90423", "GSM90424", "GSM90425", "GSM90426", "GSM90427", "GSM90428", "GSM90429", "GSM90430", "GSM90431", "GSM90432" ], "type": "tissue", "id": "GDS1903_1" }, { "dataset_id": "GDS1903", "description": "amygdala", "sample_id": [ "GSM90433", "GSM90434", "GSM90435", "GSM90436", "GSM90437", "GSM90438", "GSM90439", "GSM90440", "GSM90441", "GSM90442", "GSM90443", "GSM90444", "GSM90445", "GSM90446", "GSM90447", "GSM90448", "GSM90449", "GSM90450", "GSM90451", "GSM90452", "GSM90453", "GSM90454" ], "type": "tissue", "id": "GDS1903_2" }, { "dataset_id": "GDS1903", "description": "naive", "sample_id": [ "GSM90423", "GSM90424", "GSM90425", "GSM90426", "GSM90427", "GSM90428", "GSM90429", "GSM90430", "GSM90431", "GSM90432", "GSM90445", "GSM90446", "GSM90447", "GSM90448", "GSM90449", "GSM90450", "GSM90451", "GSM90452", "GSM90453", "GSM90454" ], "type": "protocol", "id": "GDS1903_3" }, { "dataset_id": "GDS1903", "description": "conditioning chamber, tone", "sample_id": [ "GSM90407", "GSM90408", "GSM90409", "GSM90410", "GSM90411", "GSM90412", "GSM90413", "GSM90414", "GSM90433", "GSM90434", "GSM90435", "GSM90436", "GSM90437", "GSM90438" ], "type": "protocol", "id": "GDS1903_4" }, { "dataset_id": "GDS1903", "description": "conditioning chamber, tone, footshock", "sample_id": [ "GSM90415", "GSM90416", "GSM90417", "GSM90418", "GSM90419", "GSM90420", "GSM90421", "GSM90422", "GSM90439", "GSM90440", "GSM90441", "GSM90442", "GSM90443", "GSM90444" ], "type": "protocol", "id": "GDS1903_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1903", "version": 1.0, "instances": "48", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1903.tab", "compression": "gz" } ], [ [ "GDS1904.tab" ], { "title": "Various wild-type tissues: glycogene expression profile", "description": "Analysis of various wild type murine tissues using a glycogene array. Glycosylation is the most common posttranslational modification of proteins. Results used to determine whether glycogene expression profiles could be used for the analysis of glycan synthesis and function.", "type": "Expression profiling by array", "pubmed_id": "16237199", "platform": "GPL1981", "platform_organism": [ "Homo sapiens", "Mus musculus" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "1814", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE2781", "order": "none", "update_date": "Feb 12 2007", "subsets": [ { "dataset_id": "GDS1904", "description": "bone marrow", "sample_id": [ "GSM60470", "GSM60471", "GSM60472" ], "type": "tissue", "id": "GDS1904_1" }, { "dataset_id": "GDS1904", "description": "brain", "sample_id": [ "GSM60473", "GSM60474", "GSM60475" ], "type": "tissue", "id": "GDS1904_2" }, { "dataset_id": "GDS1904", "description": "kidney", "sample_id": [ "GSM60476", "GSM60477", "GSM60488" ], "type": "tissue", "id": "GDS1904_3" }, { "dataset_id": "GDS1904", "description": "liver", "sample_id": [ "GSM60489", "GSM60491", "GSM60492" ], "type": "tissue", "id": "GDS1904_4" }, { "dataset_id": "GDS1904", "description": "lung", "sample_id": [ "GSM60496", "GSM60497", "GSM60499" ], "type": "tissue", "id": "GDS1904_5" }, { "dataset_id": "GDS1904", "description": "lymph node", "sample_id": [ "GSM60493", "GSM60494", "GSM60495" ], "type": "tissue", "id": "GDS1904_6" }, { "dataset_id": "GDS1904", "description": "spleen", "sample_id": [ "GSM60501", "GSM60502", "GSM60504" ], "type": "tissue", "id": "GDS1904_7" }, { "dataset_id": "GDS1904", "description": "testis", "sample_id": [ "GSM60505", "GSM60506", "GSM60507" ], "type": "tissue", "id": "GDS1904_8" }, { "dataset_id": "GDS1904", "description": "thymus", "sample_id": [ "GSM60508", "GSM60509", "GSM60511" ], "type": "tissue", "id": "GDS1904_9" } ], "taxid": "10090", "genes": 1458, "aggregation_function": "mean", "name": "GDS1904", "version": 1.0, "instances": "27", "variables": 1460, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1904.tab", "compression": "gz" } ], [ [ "GDS1905.tab" ], { "title": "Ovarian germ line stem cells expanded by Dpp overexpression and bam mutation", "description": "Analysis of purified ovarian germ line stem cells (GSCs) expanded by overexpression of the bone morphogenetic protein Dpp or by mutating the bam gene. Kc tissue culture cells also examined. Dpp represses bam transcription. Results provide insight into the mechanisms of GSC maintenance and function.", "type": "Expression profiling by array", "pubmed_id": "15927177", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2783", "order": "none", "update_date": "Feb 13 2007", "subsets": [ { "dataset_id": "GDS1905", "description": "control", "sample_id": [ "GSM60515", "GSM60516", "GSM60517" ], "type": "genotype/variation", "id": "GDS1905_1" }, { "dataset_id": "GDS1905", "description": "bam mutant", "sample_id": [ "GSM60498", "GSM60500", "GSM60503" ], "type": "genotype/variation", "id": "GDS1905_2" }, { "dataset_id": "GDS1905", "description": "dpp overexpressed", "sample_id": [ "GSM60510", "GSM60512", "GSM60513" ], "type": "genotype/variation", "id": "GDS1905_3" }, { "dataset_id": "GDS1905", "description": "control", "sample_id": [ "GSM60515", "GSM60516", "GSM60517" ], "type": "cell type", "id": "GDS1905_4" }, { "dataset_id": "GDS1905", "description": "germ line stem cell", "sample_id": [ "GSM60498", "GSM60500", "GSM60503", "GSM60510", "GSM60512", "GSM60513" ], "type": "cell type", "id": "GDS1905_5" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1905", "version": 1.0, "instances": "9", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1905.tab", "compression": "gz" } ], [ [ "GDS1906.tab" ], { "title": "Ovarian germ line stem cell differentiation and reversion: time course", "description": "Analysis of Dpp expanded germ line stem cells (GSCs) at various time points up to 50 hours following transient bam gene induction. GSCs differentiate into cystocytes 20 hours following bam induction. Cystocytes revert to GSCs 30 hours later. Results identify candidate GSC-specific genes.", "type": "Expression profiling by array", "pubmed_id": "15927177", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2784", "order": "none", "update_date": "Feb 13 2007", "subsets": [ { "dataset_id": "GDS1906", "description": "0 h", "sample_id": [ "GSM60520", "GSM60521" ], "type": "time", "id": "GDS1906_1" }, { "dataset_id": "GDS1906", "description": "20 h", "sample_id": [ "GSM60523", "GSM60524" ], "type": "time", "id": "GDS1906_2" }, { "dataset_id": "GDS1906", "description": "50 h", "sample_id": [ "GSM60525", "GSM60526" ], "type": "time", "id": "GDS1906_3" }, { "dataset_id": "GDS1906", "description": "germ line stem cell", "sample_id": [ "GSM60520", "GSM60521", "GSM60525", "GSM60526" ], "type": "cell type", "id": "GDS1906_4" }, { "dataset_id": "GDS1906", "description": "cystocyte", "sample_id": [ "GSM60523", "GSM60524" ], "type": "cell type", "id": "GDS1906_5" }, { "dataset_id": "GDS1906", "description": "control", "sample_id": [ "GSM60520", "GSM60521" ], "type": "protocol", "id": "GDS1906_6" }, { "dataset_id": "GDS1906", "description": "bam induced", "sample_id": [ "GSM60523", "GSM60524", "GSM60525", "GSM60526" ], "type": "protocol", "id": "GDS1906_7" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1906", "version": 1.0, "instances": "6", "variables": 12131, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1906.tab", "compression": "gz" } ], [ [ "GDS1911.tab" ], { "title": "Piper nigrum seed extract and pyrethrum insecticidal effect", "description": "Analysis of Oregon R animals treated with an ethylacetate extract from Piper nigrum seeds, natural pyrethrum, or both. Pyrethrum is an insecticide. The P. nigrum extract has insecticidal properties. The study examines the synergistic effect of both agents on gene expression.", "type": "Expression profiling by array", "pubmed_id": "16756552", "platform": "GPL1473", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16896", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE3035", "order": "none", "update_date": "Feb 14 2007", "subsets": [ { "dataset_id": "GDS1911", "description": "P. nigrum extract", "sample_id": [ "GSM66824", "GSM66825", "GSM66826", "GSM66827", "GSM66828", "GSM66829", "GSM66830", "GSM66831" ], "type": "agent", "id": "GDS1911_1" }, { "dataset_id": "GDS1911", "description": "pyrethrum", "sample_id": [ "GSM66840", "GSM66841", "GSM66842", "GSM66843" ], "type": "agent", "id": "GDS1911_2" }, { "dataset_id": "GDS1911", "description": "P. nigrum extract and pyrethrum", "sample_id": [ "GSM66832", "GSM66833", "GSM66834", "GSM66835", "GSM66836", "GSM66837", "GSM66838", "GSM66839" ], "type": "agent", "id": "GDS1911_3" } ], "taxid": "7227", "genes": 6885, "aggregation_function": "mean", "name": "GDS1911", "version": 1.0, "instances": "20", "variables": 6887, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1911.tab", "compression": "gz" } ], [ [ "GDS1912.tab" ], { "title": "X-linked recessive dystonia-parkinsonism", "description": "Expression profiling of the caudate nucleus and nucleus accumbens from the brain of a patient with X-linked recessive dystonia-parkinsonism (XDP). XDP is an adult onset disorder characterized by dystonia and parkinsonism. Result provide insight into the pathogenesis of XDP.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3064", "order": "none", "update_date": "Feb 14 2007", "subsets": [ { "dataset_id": "GDS1912", "description": "normal", "sample_id": [ "GSM66999", "GSM67002" ], "type": "disease state", "id": "GDS1912_1" }, { "dataset_id": "GDS1912", "description": "XDP", "sample_id": [ "GSM67000", "GSM67001" ], "type": "disease state", "id": "GDS1912_2" }, { "dataset_id": "GDS1912", "description": "caudate nucleus", "sample_id": [ "GSM66999", "GSM67000" ], "type": "tissue", "id": "GDS1912_3" }, { "dataset_id": "GDS1912", "description": "nucleus accumbens", "sample_id": [ "GSM67001", "GSM67002" ], "type": "tissue", "id": "GDS1912_4" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS1912", "version": 1.0, "instances": "4", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1912.tab", "compression": "gz" } ], [ [ "GDS1913.tab" ], { "title": "Streptozotocin-induced diabetic muscle response to vanadyl sulfate", "description": "Expression profiling of rear leg muscles of diabetic Wistars treated with vanadyl sulfate. Diabetes induced with streptozotocin (STZ). Studies show that vanadyl sulfate relieves diabetic hyperglycemia.", "type": "Expression profiling by array", "pubmed_id": [ "16403228", "16684804" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3068", "order": "none", "update_date": "Apr 14 2006", "subsets": [ { "dataset_id": "GDS1913", "description": "normal", "sample_id": [ "GSM67408", "GSM67409", "GSM67410", "GSM67411", "GSM67412", "GSM67423", "GSM67424", "GSM67425", "GSM67426", "GSM67427" ], "type": "disease state", "id": "GDS1913_1" }, { "dataset_id": "GDS1913", "description": "diabetes", "sample_id": [ "GSM67413", "GSM67414", "GSM67415", "GSM67416", "GSM67417", "GSM67418", "GSM67419", "GSM67420", "GSM67421", "GSM67422" ], "type": "disease state", "id": "GDS1913_2" }, { "dataset_id": "GDS1913", "description": "control", "sample_id": [ "GSM67408", "GSM67409", "GSM67410", "GSM67411", "GSM67412", "GSM67413", "GSM67414", "GSM67415", "GSM67416", "GSM67417" ], "type": "agent", "id": "GDS1913_3" }, { "dataset_id": "GDS1913", "description": "vanadyl sulfate", "sample_id": [ "GSM67418", "GSM67419", "GSM67420", "GSM67421", "GSM67422", "GSM67423", "GSM67424", "GSM67425", "GSM67426", "GSM67427" ], "type": "agent", "id": "GDS1913_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1913", "version": 1.0, "instances": "20", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1913.tab", "compression": "gz" } ], [ [ "GDS1915.tab" ], { "title": "Hepatocyte nuclear factor 4 alpha knockout effect on the small intestine", "description": "Expression profiling of small intestines lacking hepatocyte nuclear factor 4 alpha (HNF4alpha). Cre/Lox system used to knock out Hnf4a in the small intestine. HNF4alpha is a member of the nuclear receptor family of ligand-dependent transcription factors.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3124", "order": "none", "update_date": "Feb 21 2007", "subsets": [ { "dataset_id": "GDS1915", "description": "control", "sample_id": [ "GSM69780", "GSM69781" ], "type": "genotype/variation", "id": "GDS1915_1" }, { "dataset_id": "GDS1915", "description": "Hnf4a null", "sample_id": [ "GSM69778", "GSM69779" ], "type": "genotype/variation", "id": "GDS1915_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1915", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1915.tab", "compression": "gz" } ], [ [ "GDS1916.tab" ], { "title": "Hepatocyte nuclear factor 4 alpha knockout effect on the embryonic liver", "description": "Analysis of embryonic day 18.5 livers lacking hepatocyte nuclear factor 4 alpha (HNF4alpha). Cre/lox system used to knock out Hnf4a in liver. HNF4alpha is a nuclear hormone transcription factor. Results provide insight into the role of HNF4alpha in hepatogenesis.", "type": "Expression profiling by array", "pubmed_id": "16714383", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3126", "order": "none", "update_date": "Feb 21 2007", "subsets": [ { "dataset_id": "GDS1916", "description": "control", "sample_id": [ "GSM69792", "GSM69793", "GSM69794" ], "type": "genotype/variation", "id": "GDS1916_1" }, { "dataset_id": "GDS1916", "description": "Hnf4a null", "sample_id": [ "GSM69795", "GSM69796", "GSM69797" ], "type": "genotype/variation", "id": "GDS1916_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1916", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1916.tab", "compression": "gz" } ], [ [ "GDS1917.tab" ], { "title": "Cerebellar cortex in schizophrenia", "description": "Analysis of cortical samples corresponding to the crus I/VIIa area of the cerebellum from schizophrenia patients. A study indicates that targets of the RNA-binding ELAV-like protein HuD are overexpressed in the prefrontal cortex of patients with schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE4036", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1917", "description": "control", "sample_id": [ "GSM92460", "GSM92475", "GSM92476", "GSM92477", "GSM92478", "GSM92479", "GSM92480", "GSM92481", "GSM92482", "GSM92483", "GSM92484", "GSM92485", "GSM92486", "GSM92487" ], "type": "disease state", "id": "GDS1917_1" }, { "dataset_id": "GDS1917", "description": "schizophrenia", "sample_id": [ "GSM92461", "GSM92462", "GSM92463", "GSM92464", "GSM92465", "GSM92466", "GSM92467", "GSM92468", "GSM92469", "GSM92470", "GSM92471", "GSM92472", "GSM92473", "GSM92474" ], "type": "disease state", "id": "GDS1917_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1917", "version": 1.0, "instances": "28", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1917.tab", "compression": "gz" } ], [ [ "GDS192.tab" ], { "title": "Wing imaginal disc spatial gene expression", "description": "Discovery of genes with restricted expression patterns in wing disc and potential roles in wing disc development. Wing imaginal discs dissected to generate body wall and wing/hinge fragments. Three biological replicates of each examined.", "type": "Expression profiling by array", "pubmed_id": "12505997", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE93", "order": "none", "update_date": "Apr 22 2003", "subsets": [ { "dataset_id": "GDS192", "description": "imaginal wing disc body wall fragment", "sample_id": [ "GSM2583", "GSM2584", "GSM2585" ], "type": "tissue", "id": "GDS192_1" }, { "dataset_id": "GDS192", "description": "imaginal wing disc wing/hinge fragment", "sample_id": [ "GSM2586", "GSM2587", "GSM2588" ], "type": "tissue", "id": "GDS192_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS192", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS192.tab", "compression": "gz" } ], [ [ "GDS1920.tab" ], { "title": "Inhibitor-1 knockout effect on the hippocampus", "description": "Analysis of the hippocampi of inhibitor-1 knockout animals. Inhibitor-1 is an inhibitor of protein phosphatase-1 (PP1) and regulates several PP1-dependent signaling pathways, such as pathways involved in learning and memory.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4040", "order": "none", "update_date": "Aug 16 2006", "subsets": [ { "dataset_id": "GDS1920", "description": "wild-type", "sample_id": [ "GSM92512", "GSM92513", "GSM92514" ], "type": "genotype/variation", "id": "GDS1920_1" }, { "dataset_id": "GDS1920", "description": "inhibitor-1 KO", "sample_id": [ "GSM92515", "GSM92516", "GSM92517" ], "type": "genotype/variation", "id": "GDS1920_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1920", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1920.tab", "compression": "gz" } ], [ [ "GDS1921.tab" ], { "title": "High and low level freezing in response to fear: amygdala and hippocampus", "description": "Analysis of the amygdalae and hippocampi of lines exhibiting high or low freezing behavior in response to fear. The amygdala and hippocampus are brain regions important in fear behavior. Results provide insight into the genetic basis of fear behavior.", "type": "Expression profiling by array", "pubmed_id": "17309658", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE4035", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1921", "description": "amygdala", "sample_id": [ "GSM92435", "GSM92436", "GSM92437", "GSM92438", "GSM92439", "GSM92440", "GSM92441", "GSM92442", "GSM92443", "GSM92444", "GSM92445", "GSM92446" ], "type": "tissue", "id": "GDS1921_1" }, { "dataset_id": "GDS1921", "description": "hippocampus", "sample_id": [ "GSM92447", "GSM92448", "GSM92449", "GSM92450", "GSM92451", "GSM92452", "GSM92453", "GSM92454", "GSM92455", "GSM92456", "GSM92457", "GSM92458" ], "type": "tissue", "id": "GDS1921_2" }, { "dataset_id": "GDS1921", "description": "low freezing behavior", "sample_id": [ "GSM92435", "GSM92436", "GSM92437", "GSM92438", "GSM92439", "GSM92440", "GSM92447", "GSM92448", "GSM92449", "GSM92450", "GSM92451", "GSM92452" ], "type": "genotype/variation", "id": "GDS1921_3" }, { "dataset_id": "GDS1921", "description": "high freezing behavior", "sample_id": [ "GSM92441", "GSM92442", "GSM92443", "GSM92444", "GSM92445", "GSM92446", "GSM92453", "GSM92454", "GSM92455", "GSM92456", "GSM92457", "GSM92458" ], "type": "genotype/variation", "id": "GDS1921_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1921", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1921.tab", "compression": "gz" } ], [ [ "GDS1922.tab" ], { "title": "Angiopoietin-1 and vascular endothelial growth factor angiogenic effect on aortic rings (RAE230A)", "description": "Analysis of aortic rings treated with angiopoietin-1 (Ang-1) or vascular endothelial growth factor (VEGF). Aortic rings can generate neovessels ex vivo after angiogenic factor stimulation. Results identify transcriptional events associated with angiogenesis in VEGF and Ang-1 stimulated aortic rings.", "type": "Expression profiling by array", "pubmed_id": "17018690", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3355", "order": "none", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1922", "description": "untreated", "sample_id": [ "GSM75548", "GSM75834", "GSM75836" ], "type": "agent", "id": "GDS1922_1" }, { "dataset_id": "GDS1922", "description": "Ang-1", "sample_id": [ "GSM75838", "GSM75840", "GSM75842" ], "type": "agent", "id": "GDS1922_2" }, { "dataset_id": "GDS1922", "description": "VEGF", "sample_id": [ "GSM75844", "GSM75846", "GSM75848" ], "type": "agent", "id": "GDS1922_3" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1922", "version": 1.0, "instances": "9", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1922.tab", "compression": "gz" } ], [ [ "GDS1923.tab" ], { "title": "Angiopoietin-1 and vascular endothelial growth factor angiogenic effect on aortic rings (RAE230B)", "description": "Analysis of aortic rings treated with angiopoietin-1 (Ang-1) or vascular endothelial growth factor (VEGF). Aortic rings can generate neovessels ex vivo after angiogenic factor stimulation. Results identify transcriptional events associated with angiogenesis in VEGF and Ang-1 stimulated aortic rings.", "type": "Expression profiling by array", "pubmed_id": "17018690", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3355", "order": "none", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1923", "description": "untreated", "sample_id": [ "GSM75833", "GSM75835", "GSM75837" ], "type": "agent", "id": "GDS1923_1" }, { "dataset_id": "GDS1923", "description": "Ang-1", "sample_id": [ "GSM75839", "GSM75841" ], "type": "agent", "id": "GDS1923_2" }, { "dataset_id": "GDS1923", "description": "VEGF", "sample_id": [ "GSM75845", "GSM75847", "GSM75849" ], "type": "agent", "id": "GDS1923_3" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS1923", "version": 1.0, "instances": "8", "variables": 13320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1923.tab", "compression": "gz" } ], [ [ "GDS1924.tab" ], { "title": "ErbB2/Neu and luteinizing hormone overexpression effect on the mammary gland: time course", "description": "Analysis of mammary glands of 5 and 10-week-old bitransgenics overexpressing oncogenic ErbB2/Neu and luteinizing hormone (LH). Results provide insight into the effect of chronic trophic maintenance of the mammary epithelial cells, induced by LH, on ErbB2/Neu-initiated tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "16434967", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3501", "order": "ordered", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1924", "description": "5 wk", "sample_id": [ "GSM79996", "GSM79997", "GSM79998" ], "type": "age", "id": "GDS1924_1" }, { "dataset_id": "GDS1924", "description": "10 wk", "sample_id": [ "GSM79991", "GSM79994", "GSM79995" ], "type": "age", "id": "GDS1924_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1924", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1924.tab", "compression": "gz" } ], [ [ "GDS1925.tab" ], { "title": "Estrogen receptor alpha positive breast cancer cells response to hyperactivation of MAPK pathway", "description": "Analysis of estrogen receptor (ER) alpha positive MCF-7 breast cancer cells overexpressing constitutively active Raf-1, constitutively active MEK, constitutively active c-erbB-2, or ligand-activatable EGFR. Results indicate that increased MAPK activation results in loss of ER-alpha expression.", "type": "Expression profiling by array", "pubmed_id": "16585219", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3542", "order": "none", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1925", "description": "control", "sample_id": [ "GSM81189", "GSM81190", "GSM81191" ], "type": "cell line", "id": "GDS1925_1" }, { "dataset_id": "GDS1925", "description": "long-term E2 independent growth", "sample_id": [ "GSM81192", "GSM81193", "GSM81194" ], "type": "cell line", "id": "GDS1925_2" }, { "dataset_id": "GDS1925", "description": "erbB-2", "sample_id": [ "GSM81195", "GSM81196", "GSM81197" ], "type": "cell line", "id": "GDS1925_3" }, { "dataset_id": "GDS1925", "description": "MEK", "sample_id": [ "GSM81198", "GSM81199", "GSM81200" ], "type": "cell line", "id": "GDS1925_4" }, { "dataset_id": "GDS1925", "description": "Raf-1", "sample_id": [ "GSM81204", "GSM81205", "GSM81206" ], "type": "cell line", "id": "GDS1925_5" }, { "dataset_id": "GDS1925", "description": "EGFR", "sample_id": [ "GSM81201", "GSM81202", "GSM81203" ], "type": "cell line", "id": "GDS1925_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1925", "version": 1.0, "instances": "18", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1925.tab", "compression": "gz" } ], [ [ "GDS1926.tab" ], { "title": "Leukotriene D4 and thrombin effect on endothelial cells: time course", "description": "Temporal analysis of umbilical vein endothelial cells (HUVEC) treated with leukotriene D4 (LTD4) and/or thrombin. LTD4 activates the cysteinyl leukotriene receptor cysLT2-R. Thrombin activates the protease-activated receptor PAR-1. cysLT2-R and PAR-1 may cooperate to augment vascular injury.", "type": "Expression profiling by array", "pubmed_id": "16606835", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE3589", "order": "none", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1926", "description": "control", "sample_id": [ "GSM27929", "GSM82525", "GSM82530", "GSM82534", "GSM82538", "GSM82540" ], "type": "agent", "id": "GDS1926_1" }, { "dataset_id": "GDS1926", "description": "thrombin", "sample_id": [ "GSM82527", "GSM82528", "GSM82532", "GSM82536", "GSM95410", "GSM95411" ], "type": "agent", "id": "GDS1926_2" }, { "dataset_id": "GDS1926", "description": "LTD4", "sample_id": [ "GSM27930", "GSM82526", "GSM82531", "GSM82535", "GSM82539", "GSM82541" ], "type": "agent", "id": "GDS1926_3" }, { "dataset_id": "GDS1926", "description": "LTD4 and thrombin", "sample_id": [ "GSM82529", "GSM82533", "GSM82537" ], "type": "agent", "id": "GDS1926_4" }, { "dataset_id": "GDS1926", "description": "1 h", "sample_id": [ "GSM27929", "GSM27930", "GSM82525", "GSM82526", "GSM82527", "GSM82528", "GSM82529", "GSM82530", "GSM82531", "GSM82532", "GSM82533", "GSM82534", "GSM82535", "GSM82536", "GSM82537" ], "type": "time", "id": "GDS1926_5" }, { "dataset_id": "GDS1926", "description": "6 h", "sample_id": [ "GSM82538", "GSM82539", "GSM95411" ], "type": "time", "id": "GDS1926_6" }, { "dataset_id": "GDS1926", "description": "24 h", "sample_id": [ "GSM82540", "GSM82541", "GSM95410" ], "type": "time", "id": "GDS1926_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1926", "version": 1.0, "instances": "21", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1926.tab", "compression": "gz" } ], [ [ "GDS1928.tab" ], { "title": "Compensated and decompensated right ventricular hypertrophy at onset: time course", "description": "Temporal analysis of right ventricles at the onset of compensated or decompensated right ventricular hypertrophy. Compensated and decompensated phenotypes induced by injection with 30 and 80 mg/kg monocrotaline, respectively. Results identify potential prognostic markers and therapeutic targets.", "type": "Expression profiling by array", "pubmed_id": "15728335", "platform": "GPL1397", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4803", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "27", "value_type": "log2 ratio", "reference_series": "GSE3675", "order": "none", "update_date": "Feb 22 2007", "subsets": [ { "dataset_id": "GDS1928", "description": "control", "sample_id": [ "GSM85063", "GSM85064", "GSM85065", "GSM85122", "GSM85123", "GSM85124", "GSM85131", "GSM85132", "GSM85133" ], "type": "disease state", "id": "GDS1928_1" }, { "dataset_id": "GDS1928", "description": "compensated hypertrophy", "sample_id": [ "GSM85066", "GSM85067", "GSM85068", "GSM85125", "GSM85126", "GSM85127", "GSM85134", "GSM85135", "GSM85136" ], "type": "disease state", "id": "GDS1928_2" }, { "dataset_id": "GDS1928", "description": "decompensated hypertrophy", "sample_id": [ "GSM85069", "GSM85070", "GSM85071", "GSM85128", "GSM85129", "GSM85130", "GSM85137", "GSM85138", "GSM85139" ], "type": "disease state", "id": "GDS1928_3" }, { "dataset_id": "GDS1928", "description": "10 d", "sample_id": [ "GSM85063", "GSM85064", "GSM85065", "GSM85066", "GSM85067", "GSM85068", "GSM85069", "GSM85070", "GSM85071" ], "type": "time", "id": "GDS1928_4" }, { "dataset_id": "GDS1928", "description": "19 d", "sample_id": [ "GSM85122", "GSM85123", "GSM85124", "GSM85125", "GSM85126", "GSM85127", "GSM85128", "GSM85129", "GSM85130" ], "type": "time", "id": "GDS1928_5" }, { "dataset_id": "GDS1928", "description": "25 d", "sample_id": [ "GSM85131", "GSM85132", "GSM85133", "GSM85134", "GSM85135", "GSM85136", "GSM85137", "GSM85138", "GSM85139" ], "type": "time", "id": "GDS1928_6" } ], "taxid": "10116", "genes": 4646, "aggregation_function": "mean", "name": "GDS1928", "version": 1.0, "instances": "27", "variables": 4649, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1928.tab", "compression": "gz" } ], [ [ "GDS1929.tab" ], { "title": "Growth hormone effect on bone: time course", "description": "Analysis of femurs and tibias of growth hormone (GH) deficient animals at 6 and 24 hours following treatment with 4 mg/kg body weight GH. Results provide insight into the insulin-like growth factor-I dependent and independent pathways that mediate the action of GH in bone.", "type": "Expression profiling by array", "pubmed_id": "16464905", "platform": "GPL922", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE3689", "order": "ordered", "update_date": "Apr 18 2006", "subsets": [ { "dataset_id": "GDS1929", "description": "6 h", "sample_id": [ "GSM85323", "GSM85324", "GSM85325" ], "type": "time", "id": "GDS1929_1" }, { "dataset_id": "GDS1929", "description": "24 h", "sample_id": [ "GSM85326", "GSM85327", "GSM85328" ], "type": "time", "id": "GDS1929_2" } ], "taxid": "10090", "genes": 17212, "aggregation_function": "mean", "name": "GDS1929", "version": 1.0, "instances": "6", "variables": 17214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1929.tab", "compression": "gz" } ], [ [ "GDS1931.tab" ], { "title": "Retinoblastoma-like p107 knockout effect on neurospheres (MG-430A)", "description": "Expression profiling of neurospheres cultured from the brain of embryonic day 13.5 p107 knockout embryos. p107 knockout animals exhibit enhanced stem cell self-renewal and have an increased number of stem cells.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE3779", "order": "none", "update_date": "Apr 18 2006", "subsets": [ { "dataset_id": "GDS1931", "description": "wild type", "sample_id": [ "GSM86663", "GSM86665", "GSM86667" ], "type": "genotype/variation", "id": "GDS1931_1" }, { "dataset_id": "GDS1931", "description": "p107 knockout", "sample_id": [ "GSM86669", "GSM86671", "GSM86673", "GSM86675" ], "type": "genotype/variation", "id": "GDS1931_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1931", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1931.tab", "compression": "gz" } ], [ [ "GDS1932.tab" ], { "title": "Retinoblastoma-like p107 knockout effect on neurospheres (MG-430B)", "description": "Expression profiling of neurospheres cultured from the brain of embryonic day 13.5 p107 knockout embryos. p107 knockout animals exhibit enhanced stem cell self-renewal and have an increased number of stem cells.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE3779", "order": "none", "update_date": "Apr 18 2006", "subsets": [ { "dataset_id": "GDS1932", "description": "wild type", "sample_id": [ "GSM86664", "GSM86666", "GSM86668" ], "type": "genotype/variation", "id": "GDS1932_1" }, { "dataset_id": "GDS1932", "description": "p107 knockout", "sample_id": [ "GSM86670", "GSM86672", "GSM86674", "GSM86676" ], "type": "genotype/variation", "id": "GDS1932_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS1932", "version": 1.0, "instances": "7", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1932.tab", "compression": "gz" } ], [ [ "GDS1933.tab" ], { "title": "Positively selected H-2b T cell receptor transgenic thymocytes (MG-U74A)", "description": "Analysis of positively selected T cell receptor (TCR) transgenic thymocytes from H-2b animals. T lymphocyte development involves TCR-mediated positive selection that ensures the survival of potentially useful T cells. Results provide insight into T lymphocyte development and selection.", "type": "Expression profiling by array", "pubmed_id": "16509771", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE3909", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1933", "description": "wild type", "sample_id": [ "GSM89489", "GSM89490" ], "type": "genotype/variation", "id": "GDS1933_1" }, { "dataset_id": "GDS1933", "description": "TCR transgenic", "sample_id": [ "GSM89491", "GSM89492" ], "type": "genotype/variation", "id": "GDS1933_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1933", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1933.tab", "compression": "gz" } ], [ [ "GDS1934.tab" ], { "title": "Positively selected H-2b T cell receptor transgenic thymocytes (MG-U74B)", "description": "Analysis of positively selected T cell receptor (TCR) transgenic thymocytes from H-2b animals. T lymphocyte development involves TCR-mediated positive selection that ensures the survival of potentially useful T cells. Results provide insight into T lymphocyte development and selection.", "type": "Expression profiling by array", "pubmed_id": "16509771", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE3909", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1934", "description": "wild type", "sample_id": [ "GSM89493", "GSM89494" ], "type": "genotype/variation", "id": "GDS1934_1" }, { "dataset_id": "GDS1934", "description": "TCR transgenic", "sample_id": [ "GSM89495", "GSM89496" ], "type": "genotype/variation", "id": "GDS1934_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1934", "version": 1.0, "instances": "4", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1934.tab", "compression": "gz" } ], [ [ "GDS1936.tab" ], { "title": "Positively selected H-2b T cell receptor transgenic thymocytes (MG-U74C)", "description": "Analysis of positively selected T cell receptor (TCR) transgenic thymocytes from H-2b animals. T lymphocyte development involves TCR-mediated positive selection that ensures the survival of potentially useful T cells. Results provide insight into T lymphocyte development and selection.", "type": "Expression profiling by array", "pubmed_id": "16509771", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE3909", "order": "none", "update_date": "Feb 23 2007", "subsets": [ { "dataset_id": "GDS1936", "description": "wild type", "sample_id": [ "GSM89497", "GSM89498" ], "type": "genotype/variation", "id": "GDS1936_1" }, { "dataset_id": "GDS1936", "description": "TCR transgenic", "sample_id": [ "GSM89499", "GSM89500" ], "type": "genotype/variation", "id": "GDS1936_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1936", "version": 1.0, "instances": "4", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1936.tab", "compression": "gz" } ], [ [ "GDS1937.tab" ], { "title": "Early embryo development", "description": "Analysis of early embryos at various stages of development: before zygotic transcription, during the slow and the fast phases of cellularization, and at the beginning and the end of gastrulation. Results provide insight into the molecular mechanisms underlying the control of cellularization.", "type": "Expression profiling by array", "pubmed_id": "16421189", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE3955", "order": "ordered", "update_date": "Feb 23 2007", "subsets": [ { "dataset_id": "GDS1937", "description": "before zygotic transcription", "sample_id": [ "GSM90226", "GSM90227", "GSM90228" ], "type": "development stage", "id": "GDS1937_1" }, { "dataset_id": "GDS1937", "description": "slow phase of cellularization", "sample_id": [ "GSM90229", "GSM90230", "GSM90231" ], "type": "development stage", "id": "GDS1937_2" }, { "dataset_id": "GDS1937", "description": "fast phase of cellularization", "sample_id": [ "GSM90232", "GSM90233", "GSM90234" ], "type": "development stage", "id": "GDS1937_3" }, { "dataset_id": "GDS1937", "description": "beginning of gastrulation", "sample_id": [ "GSM90255", "GSM90256", "GSM90257" ], "type": "development stage", "id": "GDS1937_4" }, { "dataset_id": "GDS1937", "description": "end of gastrulation", "sample_id": [ "GSM90258", "GSM90259", "GSM90260" ], "type": "development stage", "id": "GDS1937_5" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS1937", "version": 1.0, "instances": "15", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1937.tab", "compression": "gz" } ], [ [ "GDS1938.tab" ], { "title": "AMP-activated protein kinase gamma-3 knockout effect on skeletal muscle", "description": "Analysis of white portions of gastrocnemius muscles from AMP-activated protein kinase (AMPK) gamma-3 knockout mutants. AMPK gamma-3 is important in glucose uptake, glycogen synthesis, and fat oxidation. Results compared to those from AMPK gamma-3 R225Q transgenic mutant (GDS1939).", "type": "Expression profiling by array", "pubmed_id": "16410251", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4063", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1938", "description": "wild type", "sample_id": [ "GSM92993", "GSM92994", "GSM93002", "GSM93003", "GSM93004", "GSM93005" ], "type": "genotype/variation", "id": "GDS1938_1" }, { "dataset_id": "GDS1938", "description": "AMPK gamma-3 null", "sample_id": [ "GSM92956", "GSM92983", "GSM92986", "GSM92989", "GSM92991", "GSM92992" ], "type": "genotype/variation", "id": "GDS1938_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1938", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1938.tab", "compression": "gz" } ], [ [ "GDS1939.tab" ], { "title": "AMP-activated protein kinase gamma-3 R225Q mutation effect on skeletal muscle", "description": "Analysis of white portions of gastrocnemius muscles from AMP-activated protein kinase (AMPK) gamma-3 R225Q transgenic mutants. AMPK gamma-3 is important in glucose uptake, glycogen synthesis, and fat oxidation. Results compared to those from AMPK gamma-3 knockout mutant (GDS1938).", "type": "Expression profiling by array", "pubmed_id": "16410251", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4065", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1939", "description": "wild type", "sample_id": [ "GSM93235", "GSM93236", "GSM93237", "GSM93238", "GSM93239", "GSM93240" ], "type": "genotype/variation", "id": "GDS1939_1" }, { "dataset_id": "GDS1939", "description": "AMPK gamma-3 R225Q mutant", "sample_id": [ "GSM93229", "GSM93230", "GSM93231", "GSM93232", "GSM93233", "GSM93234" ], "type": "genotype/variation", "id": "GDS1939_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1939", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1939.tab", "compression": "gz" } ], [ [ "GDS1940.tab" ], { "title": "Eccentric exercise effect on skeletal muscle: time course", "description": "Analysis of vastus lateralis muscles of healthy subjects 3 and 48 hrs after a bout of resistance (RES) exercise of 300 single-leg maximal eccentric contractions (EC). EC is the lengthening of a muscle due to an external force while that muscle is contracting. EC commonly results in muscle damage.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL3457", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE4249", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1940", "description": "subject 1", "sample_id": [ "GSM96855", "GSM96860" ], "type": "individual", "id": "GDS1940_1" }, { "dataset_id": "GDS1940", "description": "subject 2", "sample_id": [ "GSM96856", "GSM96858" ], "type": "individual", "id": "GDS1940_2" }, { "dataset_id": "GDS1940", "description": "subject 3", "sample_id": [ "GSM96854", "GSM96859" ], "type": "individual", "id": "GDS1940_3" }, { "dataset_id": "GDS1940", "description": "subject 4", "sample_id": [ "GSM96857" ], "type": "individual", "id": "GDS1940_4" }, { "dataset_id": "GDS1940", "description": "3 h", "sample_id": [ "GSM96854", "GSM96855", "GSM96856", "GSM96857" ], "type": "time", "id": "GDS1940_5" }, { "dataset_id": "GDS1940", "description": "48 h", "sample_id": [ "GSM96858", "GSM96859", "GSM96860" ], "type": "time", "id": "GDS1940_6" } ], "taxid": "9606", "genes": 7655, "aggregation_function": "mean", "name": "GDS1940", "version": 1.0, "instances": "7", "variables": 7658, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1940.tab", "compression": "gz" } ], [ [ "GDS1941.tab" ], { "title": "Cystic fibrosis transmembrane conductance regulator deficiency in different genetic backgrounds", "description": "Analysis of lungs of C57BL/6J (B6) or BALB/c (BALB) animals deficient for cystic fibrosis transmembrane conductance regulator (CFTR). B6 background animals have a higher propensity to develop CF lung disease. Results suggest the variable severity of CF is controlled by multiple genetic factors.", "type": "Expression profiling by array", "pubmed_id": "16614460", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE3100", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1941", "description": "male", "sample_id": [ "GSM69245", "GSM69247", "GSM69250", "GSM69251", "GSM69255", "GSM69256", "GSM69257", "GSM69258", "GSM69259", "GSM69266", "GSM69267" ], "type": "gender", "id": "GDS1941_1" }, { "dataset_id": "GDS1941", "description": "female", "sample_id": [ "GSM69246", "GSM69248", "GSM69249", "GSM69252", "GSM69253", "GSM69254", "GSM69260", "GSM69261", "GSM69262", "GSM69263", "GSM69264", "GSM69265" ], "type": "gender", "id": "GDS1941_2" }, { "dataset_id": "GDS1941", "description": "control", "sample_id": [ "GSM69246", "GSM69247", "GSM69248", "GSM69249", "GSM69250", "GSM69251", "GSM69257", "GSM69258", "GSM69259", "GSM69263", "GSM69264", "GSM69265" ], "type": "genotype/variation", "id": "GDS1941_3" }, { "dataset_id": "GDS1941", "description": "CFTR deficient", "sample_id": [ "GSM69245", "GSM69252", "GSM69253", "GSM69254", "GSM69255", "GSM69256", "GSM69260", "GSM69261", "GSM69262", "GSM69266", "GSM69267" ], "type": "genotype/variation", "id": "GDS1941_4" }, { "dataset_id": "GDS1941", "description": "B6", "sample_id": [ "GSM69245", "GSM69246", "GSM69247", "GSM69248", "GSM69249", "GSM69250", "GSM69251", "GSM69252", "GSM69253", "GSM69254", "GSM69255" ], "type": "strain", "id": "GDS1941_5" }, { "dataset_id": "GDS1941", "description": "BALB", "sample_id": [ "GSM69256", "GSM69257", "GSM69258", "GSM69259", "GSM69260", "GSM69261", "GSM69262", "GSM69263", "GSM69264", "GSM69265", "GSM69266", "GSM69267" ], "type": "strain", "id": "GDS1941_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1941", "version": 1.0, "instances": "23", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1941.tab", "compression": "gz" } ], [ [ "GDS1942.tab" ], { "title": "Transgenic Kr\u00fcppel-like factor 4 induction: time course", "description": "Analysis of RKO colon cancer cell line treated for up to 24 hours with ponasterone A to induce expression of a full-length, transgenic Kr\u00fcppel-like factor 4 (KLF4). KLF4 is an epithelially-enriched, zinc finger transcription factor. Results provide insight into the biochemical function of KLF4.", "type": "Expression profiling by array", "pubmed_id": "17017123", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE3113", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1942", "description": "control", "sample_id": [ "GSM69661", "GSM69669", "GSM69670", "GSM69671", "GSM69672", "GSM69673", "GSM69674", "GSM69675" ], "type": "protocol", "id": "GDS1942_1" }, { "dataset_id": "GDS1942", "description": "induced", "sample_id": [ "GSM69662", "GSM69663", "GSM69664", "GSM69665", "GSM69666", "GSM69667", "GSM69668" ], "type": "protocol", "id": "GDS1942_2" }, { "dataset_id": "GDS1942", "description": "0 h", "sample_id": [ "GSM69661" ], "type": "time", "id": "GDS1942_3" }, { "dataset_id": "GDS1942", "description": "1 h", "sample_id": [ "GSM69662", "GSM69669" ], "type": "time", "id": "GDS1942_4" }, { "dataset_id": "GDS1942", "description": "2 h", "sample_id": [ "GSM69663", "GSM69670" ], "type": "time", "id": "GDS1942_5" }, { "dataset_id": "GDS1942", "description": "4 h", "sample_id": [ "GSM69664", "GSM69671" ], "type": "time", "id": "GDS1942_6" }, { "dataset_id": "GDS1942", "description": "6 h", "sample_id": [ "GSM69665", "GSM69672" ], "type": "time", "id": "GDS1942_7" }, { "dataset_id": "GDS1942", "description": "8 h", "sample_id": [ "GSM69666", "GSM69673" ], "type": "time", "id": "GDS1942_8" }, { "dataset_id": "GDS1942", "description": "12 h", "sample_id": [ "GSM69667", "GSM69674" ], "type": "time", "id": "GDS1942_9" }, { "dataset_id": "GDS1942", "description": "24 h", "sample_id": [ "GSM69668", "GSM69675" ], "type": "time", "id": "GDS1942_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1942", "version": 1.0, "instances": "15", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1942.tab", "compression": "gz" } ], [ [ "GDS1943.tab" ], { "title": "Various tissues from somatic clones", "description": "Analysis of various tissues from somatically cloned neonates. Clones produced by injecting the nucleus of cumulus or Sertoli cells into enucleated mature oocytes. Results provide insight into how somatic clones differ from each other and from normal individuals produced by sexual reproduction.", "type": "Expression profiling by array", "pubmed_id": "16120825", "platform": "GPL2026", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10012", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE3128", "order": "none", "update_date": "Feb 23 2007", "subsets": [ { "dataset_id": "GDS1943", "description": "normal", "sample_id": [ "GSM69801", "GSM69802", "GSM69803", "GSM69804", "GSM69813", "GSM69814", "GSM69815", "GSM69816", "GSM69825", "GSM69826", "GSM69827", "GSM69828" ], "type": "other", "id": "GDS1943_1" }, { "dataset_id": "GDS1943", "description": "somatic clone", "sample_id": [ "GSM69805", "GSM69806", "GSM69807", "GSM69808", "GSM69809", "GSM69810", "GSM69811", "GSM69812", "GSM69817", "GSM69818", "GSM69819", "GSM69820", "GSM69821", "GSM69822", "GSM69823", "GSM69824", "GSM69829", "GSM69830", "GSM69831", "GSM69832", "GSM69833", "GSM69834", "GSM69835", "GSM69836" ], "type": "other", "id": "GDS1943_2" }, { "dataset_id": "GDS1943", "description": "control", "sample_id": [ "GSM69801", "GSM69802", "GSM69803", "GSM69804", "GSM69813", "GSM69814", "GSM69815", "GSM69816", "GSM69825", "GSM69826", "GSM69827", "GSM69828" ], "type": "cell type", "id": "GDS1943_3" }, { "dataset_id": "GDS1943", "description": "cumulus", "sample_id": [ "GSM69809", "GSM69810", "GSM69811", "GSM69812", "GSM69821", "GSM69822", "GSM69823", "GSM69824", "GSM69833", "GSM69834", "GSM69835", "GSM69836" ], "type": "cell type", "id": "GDS1943_4" }, { "dataset_id": "GDS1943", "description": "Sertoli", "sample_id": [ "GSM69805", "GSM69806", "GSM69807", "GSM69808", "GSM69817", "GSM69818", "GSM69819", "GSM69820", "GSM69829", "GSM69830", "GSM69831", "GSM69832" ], "type": "cell type", "id": "GDS1943_5" }, { "dataset_id": "GDS1943", "description": "brain", "sample_id": [ "GSM69825", "GSM69826", "GSM69827", "GSM69828", "GSM69829", "GSM69830", "GSM69831", "GSM69832", "GSM69833", "GSM69834", "GSM69835", "GSM69836" ], "type": "tissue", "id": "GDS1943_6" }, { "dataset_id": "GDS1943", "description": "kidney", "sample_id": [ "GSM69801", "GSM69802", "GSM69803", "GSM69804", "GSM69805", "GSM69806", "GSM69807", "GSM69808", "GSM69809", "GSM69810", "GSM69811", "GSM69812" ], "type": "tissue", "id": "GDS1943_7" }, { "dataset_id": "GDS1943", "description": "liver", "sample_id": [ "GSM69813", "GSM69814", "GSM69815", "GSM69816", "GSM69817", "GSM69818", "GSM69819", "GSM69820", "GSM69821", "GSM69822", "GSM69823", "GSM69824" ], "type": "tissue", "id": "GDS1943_8" } ], "taxid": "10090", "genes": 9860, "aggregation_function": "mean", "name": "GDS1943", "version": 1.0, "instances": "36", "variables": 9864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1943.tab", "compression": "gz" } ], [ [ "GDS1954.tab" ], { "title": "Various T7 RNA polymerase-based RNA amplification/labeling methods", "description": "Comparison of expression profiles generated using various T7 RNA polymerase-based in vitro transcription (IVT) RNA labeling methods. The length of the IVT reactions ranged from 4 to 16 hours. Results provide evidence for amplification method-dependent biases in gene expression data.", "type": "Expression profiling by array", "pubmed_id": "16645204", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3254", "order": "none", "update_date": "Jun 12 2006", "subsets": [ { "dataset_id": "GDS1954", "description": "Affymetrix", "sample_id": [ "GSM73359", "GSM73360", "GSM73361", "GSM73362", "GSM73363", "GSM73344", "GSM73345", "GSM73346", "GSM73347", "GSM73348" ], "type": "protocol", "id": "GDS1954_1" }, { "dataset_id": "GDS1954", "description": "CodeLink", "sample_id": [ "GSM73349", "GSM73350", "GSM73351", "GSM73352", "GSM73353" ], "type": "protocol", "id": "GDS1954_2" }, { "dataset_id": "GDS1954", "description": "Enzo", "sample_id": [ "GSM73354", "GSM73355", "GSM73356", "GSM73357", "GSM73358" ], "type": "protocol", "id": "GDS1954_3" }, { "dataset_id": "GDS1954", "description": "4 h", "sample_id": [ "GSM73359", "GSM73360", "GSM73361", "GSM73362", "GSM73363", "GSM73354", "GSM73355", "GSM73356", "GSM73357", "GSM73358" ], "type": "time", "id": "GDS1954_4" }, { "dataset_id": "GDS1954", "description": "14 h", "sample_id": [ "GSM73349", "GSM73350", "GSM73351", "GSM73352", "GSM73353" ], "type": "time", "id": "GDS1954_5" }, { "dataset_id": "GDS1954", "description": "16 h", "sample_id": [ "GSM73344", "GSM73345", "GSM73346", "GSM73347", "GSM73348" ], "type": "time", "id": "GDS1954_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS1954", "version": 1.0, "instances": "20", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1954.tab", "compression": "gz" } ], [ [ "GDS1955.tab" ], { "title": "Fibroblast growth factor receptor 1 activation effect on mammary glands: time course", "description": "Temporal analysis of mammary glands from transgenic animals treated with dimerizing agent AP20187 to activate inducible fibroblast growth factor receptor 1 (iFGFR1). iFGFR1 dimerization induces proliferation in the mammary gland. Results provide insight into the early progression of tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE3260", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1955", "description": "untreated", "sample_id": [ "GSM72723", "GSM72730", "GSM72795", "GSM72877", "GSM72790", "GSM72791" ], "type": "agent", "id": "GDS1955_1" }, { "dataset_id": "GDS1955", "description": "AP20187", "sample_id": [ "GSM72724", "GSM72725", "GSM72726", "GSM72787", "GSM72788", "GSM72789", "GSM72792", "GSM72793", "GSM72794", "GSM72868", "GSM72869", "GSM72876" ], "type": "agent", "id": "GDS1955_2" }, { "dataset_id": "GDS1955", "description": "0 h", "sample_id": [ "GSM72723", "GSM72730", "GSM72795", "GSM72877", "GSM72790", "GSM72791" ], "type": "time", "id": "GDS1955_3" }, { "dataset_id": "GDS1955", "description": "8 h", "sample_id": [ "GSM72724", "GSM72787", "GSM72794", "GSM72876" ], "type": "time", "id": "GDS1955_4" }, { "dataset_id": "GDS1955", "description": "16 h", "sample_id": [ "GSM72725", "GSM72788", "GSM72792", "GSM72868" ], "type": "time", "id": "GDS1955_5" }, { "dataset_id": "GDS1955", "description": "24 h", "sample_id": [ "GSM72726", "GSM72789", "GSM72793", "GSM72869", "GSM72727" ], "type": "time", "id": "GDS1955_6" }, { "dataset_id": "GDS1955", "description": "wild-type", "sample_id": [ "GSM72790", "GSM72791" ], "type": "strain", "id": "GDS1955_7" }, { "dataset_id": "GDS1955", "description": "transgenic", "sample_id": [ "GSM72723", "GSM72724", "GSM72725", "GSM72726", "GSM72727", "GSM72730", "GSM72787", "GSM72788", "GSM72789", "GSM72792", "GSM72793", "GSM72794", "GSM72795", "GSM72868", "GSM72869", "GSM72876", "GSM72877" ], "type": "strain", "id": "GDS1955_8" }, { "dataset_id": "GDS1955", "description": "solvent", "sample_id": [ "GSM72727" ], "type": "agent", "id": "GDS1955_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1955", "version": 1.0, "instances": "19", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1955.tab", "compression": "gz" } ], [ [ "GDS1956.tab" ], { "title": "Various muscle diseases (HG-U133A)", "description": "Analysis of muscle biopsy specimens from patients with various muscle diseases. Results provide insight into the diagnosis and pathogenesis of muscle diseases.", "type": "Expression profiling by array", "pubmed_id": [ "16478798", "25313409" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "121", "value_type": "count", "reference_series": "GSE3307", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS1956", "description": "normal", "sample_id": [ "GSM74356", "GSM74357", "GSM74358", "GSM74359", "GSM74360", "GSM74361", "GSM74362", "GSM74363", "GSM74402", "GSM74403", "GSM74404", "GSM119936", "GSM119937", "GSM74408", "GSM74409", "GSM74410", "GSM74406", "GSM74407" ], "type": "disease state", "id": "GDS1956_1" }, { "dataset_id": "GDS1956", "description": "acute quadriplegic myopathy", "sample_id": [ "GSM74411", "GSM74412", "GSM74413", "GSM74414", "GSM74415" ], "type": "disease state", "id": "GDS1956_2" }, { "dataset_id": "GDS1956", "description": "juvenile dermatomyositis", "sample_id": [ "GSM121379", "GSM121380", "GSM121381", "GSM121382", "GSM121383", "GSM121384", "GSM121385", "GSM121386", "GSM121387", "GSM121388", "GSM121389", "GSM121390", "GSM121391", "GSM121392", "GSM121393", "GSM121394", "GSM121395", "GSM121396", "GSM121397", "GSM121398", "GSM121399" ], "type": "disease state", "id": "GDS1956_3" }, { "dataset_id": "GDS1956", "description": "amyotophic lateral sclerosis", "sample_id": [ "GSM74240", "GSM74241", "GSM74242", "GSM74243", "GSM74244", "GSM74245", "GSM74246", "GSM74247", "GSM74248" ], "type": "disease state", "id": "GDS1956_4" }, { "dataset_id": "GDS1956", "description": "spastic paraplegia", "sample_id": [ "GSM74416", "GSM74417", "GSM74418", "GSM74419" ], "type": "disease state", "id": "GDS1956_5" }, { "dataset_id": "GDS1956", "description": "fascioscapulohumeral muscular dystrophy", "sample_id": [ "GSM121358", "GSM121359", "GSM121360", "GSM121362", "GSM121364", "GSM121365", "GSM121366", "GSM121367", "GSM121370", "GSM121371", "GSM121372", "GSM121373", "GSM121374", "GSM121407" ], "type": "disease state", "id": "GDS1956_6" }, { "dataset_id": "GDS1956", "description": "Emery-Dreifuss muscular dystrophy", "sample_id": [ "GSM74387", "GSM74388", "GSM74389", "GSM74390", "GSM74391", "GSM74392", "GSM74393", "GSM74394" ], "type": "disease state", "id": "GDS1956_7" }, { "dataset_id": "GDS1956", "description": "Becker muscular dystrophy", "sample_id": [ "GSM74239", "GSM74364", "GSM74365", "GSM74366", "GSM74367" ], "type": "disease state", "id": "GDS1956_8" }, { "dataset_id": "GDS1956", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM74377", "GSM74378", "GSM74379", "GSM74380", "GSM74381", "GSM121357", "GSM121361", "GSM121363", "GSM121368", "GSM121369" ], "type": "disease state", "id": "GDS1956_9" }, { "dataset_id": "GDS1956", "description": "Calpain 3 mutation", "sample_id": [ "GSM74368", "GSM74369", "GSM74370", "GSM74371", "GSM74372", "GSM74373", "GSM74374", "GSM74375", "GSM74376", "GSM74405" ], "type": "disease state", "id": "GDS1956_10" }, { "dataset_id": "GDS1956", "description": "dysferlin mutation", "sample_id": [ "GSM74351", "GSM74352", "GSM74353", "GSM74354", "GSM74355", "GSM74382", "GSM74383", "GSM74384", "GSM74385", "GSM74386" ], "type": "disease state", "id": "GDS1956_11" }, { "dataset_id": "GDS1956", "description": "FKRP mutation", "sample_id": [ "GSM74395", "GSM74396", "GSM74397", "GSM74398", "GSM74399", "GSM74400", "GSM74401" ], "type": "disease state", "id": "GDS1956_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1956", "version": 1.0, "instances": "121", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1956.tab", "compression": "gz" } ], [ [ "GDS1957.tab" ], { "title": "Interferon gamma effect on suppressor of cytokine signaling-1 deficient livers: time course", "description": "Analysis of the effect of interferon gamma (IFNg) on the livers of animals lacking IFNg, or both suppressor of cytokine signaling-1 (SOCS1) and IFNg. Gene expression examined up to 48 hours following IFNg treatment. Results provide insight into the role of SOCS1 in regulating the response to IFNg.", "type": "Expression profiling by array", "pubmed_id": "16473883", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE4232", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1957", "description": "untreated", "sample_id": [ "GSM96571", "GSM96581" ], "type": "agent", "id": "GDS1957_1" }, { "dataset_id": "GDS1957", "description": "buffer", "sample_id": [ "GSM96572", "GSM96573", "GSM96582", "GSM96583" ], "type": "agent", "id": "GDS1957_2" }, { "dataset_id": "GDS1957", "description": "IFNg", "sample_id": [ "GSM96574", "GSM96575", "GSM96576", "GSM96577", "GSM96578", "GSM96579", "GSM96580", "GSM96584", "GSM96585", "GSM96586", "GSM96587", "GSM96588", "GSM96589", "GSM96590", "GSM96591", "GSM96592" ], "type": "agent", "id": "GDS1957_3" }, { "dataset_id": "GDS1957", "description": "IFNg deficient", "sample_id": [ "GSM96571", "GSM96572", "GSM96573", "GSM96574", "GSM96575", "GSM96576", "GSM96577", "GSM96578", "GSM96579", "GSM96580", "GSM96592" ], "type": "genotype/variation", "id": "GDS1957_4" }, { "dataset_id": "GDS1957", "description": "IFNg deficient, SOCS1 deficient", "sample_id": [ "GSM96581", "GSM96582", "GSM96583", "GSM96584", "GSM96585", "GSM96586", "GSM96587", "GSM96588", "GSM96589", "GSM96590", "GSM96591" ], "type": "genotype/variation", "id": "GDS1957_5" }, { "dataset_id": "GDS1957", "description": "0 h", "sample_id": [ "GSM96571", "GSM96581" ], "type": "time", "id": "GDS1957_6" }, { "dataset_id": "GDS1957", "description": "0.5 h", "sample_id": [ "GSM96574", "GSM96584" ], "type": "time", "id": "GDS1957_7" }, { "dataset_id": "GDS1957", "description": "1 h", "sample_id": [ "GSM96575", "GSM96585" ], "type": "time", "id": "GDS1957_8" }, { "dataset_id": "GDS1957", "description": "2 h", "sample_id": [ "GSM96576", "GSM96586" ], "type": "time", "id": "GDS1957_9" }, { "dataset_id": "GDS1957", "description": "4 h", "sample_id": [ "GSM96572", "GSM96582", "GSM96587", "GSM96592" ], "type": "time", "id": "GDS1957_10" }, { "dataset_id": "GDS1957", "description": "12 h", "sample_id": [ "GSM96573", "GSM96577", "GSM96583", "GSM96588" ], "type": "time", "id": "GDS1957_11" }, { "dataset_id": "GDS1957", "description": "16 h", "sample_id": [ "GSM96578", "GSM96589" ], "type": "time", "id": "GDS1957_12" }, { "dataset_id": "GDS1957", "description": "24 h", "sample_id": [ "GSM96579", "GSM96590" ], "type": "time", "id": "GDS1957_13" }, { "dataset_id": "GDS1957", "description": "48 h", "sample_id": [ "GSM96580", "GSM96591" ], "type": "time", "id": "GDS1957_14" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1957", "version": 1.0, "instances": "22", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1957.tab", "compression": "gz" } ], [ [ "GDS1959.tab" ], { "title": "Ischemic myocardium response to reperfusion", "description": "Analysis of ischemic heart ventricles 2 or 7 days after reperfusion. Ischemia induced by occlusion of the left anterior descending coronary artery. Results provide insight into the molecular mechanisms involved in the early and late inflammatory phases of acute myocardial infarction.", "type": "Expression profiling by array", "pubmed_id": "16554547", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4105", "order": "none", "update_date": "Mar 06 2007", "subsets": [ { "dataset_id": "GDS1959", "description": "2 d", "sample_id": [ "GSM93895", "GSM93896", "GSM93897", "GSM93901", "GSM93902", "GSM93903" ], "type": "time", "id": "GDS1959_1" }, { "dataset_id": "GDS1959", "description": "7 d", "sample_id": [ "GSM93881", "GSM93893", "GSM93894", "GSM93898", "GSM93899", "GSM93900" ], "type": "time", "id": "GDS1959_2" }, { "dataset_id": "GDS1959", "description": "sham control", "sample_id": [ "GSM93898", "GSM93899", "GSM93900", "GSM93901", "GSM93902", "GSM93903" ], "type": "protocol", "id": "GDS1959_3" }, { "dataset_id": "GDS1959", "description": "ischemia / reperfusion", "sample_id": [ "GSM93881", "GSM93893", "GSM93894", "GSM93895", "GSM93896", "GSM93897" ], "type": "protocol", "id": "GDS1959_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS1959", "version": 1.0, "instances": "12", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1959.tab", "compression": "gz" } ], [ [ "GDS1960.tab" ], { "title": "Testicular diffuse large B cell lymphoma", "description": "Analysis of testicular diffuse large B cell lymphoma (DLBCL) tissues with small homozygous HLA-DQ/HLA-DR deletions, larger hemizygous MHC complex deletions, or without deletions. Results provide insight into the significance of the downregulation of HLA class II expression in testicular DLBCL.", "type": "Expression profiling by array", "pubmed_id": "16675561", "platform": "GPL3408", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log2 ratio", "reference_series": "GSE4157", "order": "none", "update_date": "Mar 06 2007", "subsets": [ { "dataset_id": "GDS1960", "description": "Nodal DLBCL", "sample_id": [ "GSM94779", "GSM94782", "GSM94786", "GSM94789", "GSM94791", "GSM94792", "GSM94793", "GSM94794", "GSM94795", "GSM94796" ], "type": "disease state", "id": "GDS1960_1" }, { "dataset_id": "GDS1960", "description": "Testicular DLBCL", "sample_id": [ "GSM94797", "GSM94798", "GSM94799", "GSM94800", "GSM94801", "GSM94802", "GSM94803", "GSM94804", "GSM94805", "GSM94806", "GSM94807", "GSM94808", "GSM94809", "GSM94810", "GSM94811", "GSM94812", "GSM94813", "GSM94814", "GSM94815", "GSM94816", "GSM94817", "GSM94818", "GSM94819", "GSM94820", "GSM94821", "GSM94822" ], "type": "disease state", "id": "GDS1960_2" }, { "dataset_id": "GDS1960", "description": "not applicable", "sample_id": [ "GSM94779", "GSM94782", "GSM94786", "GSM94789", "GSM94791", "GSM94792", "GSM94793", "GSM94794", "GSM94795", "GSM94796" ], "type": "other", "id": "GDS1960_3" }, { "dataset_id": "GDS1960", "description": "low HLA-DR expression", "sample_id": [ "GSM94798", "GSM94799", "GSM94800", "GSM94801", "GSM94802", "GSM94803", "GSM94804", "GSM94806", "GSM94808", "GSM94809", "GSM94810", "GSM94811", "GSM94812", "GSM94813", "GSM94814", "GSM94815", "GSM94817", "GSM94818", "GSM94820", "GSM94822" ], "type": "other", "id": "GDS1960_4" }, { "dataset_id": "GDS1960", "description": "normal or high HLA-DR expression", "sample_id": [ "GSM94797", "GSM94805", "GSM94807", "GSM94816", "GSM94819", "GSM94821" ], "type": "other", "id": "GDS1960_5" } ], "taxid": "9606", "genes": 16414, "aggregation_function": "mean", "name": "GDS1960", "version": 1.0, "instances": "36", "variables": 16417, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1960.tab", "compression": "gz" } ], [ [ "GDS1962.tab" ], { "title": "Glioma-derived stem cell factor effect on angiogenesis in the brain", "description": "Analysis of gliomas of different grades. Stem cell factor (SCF) is overexpressed by glioma cells but its role in gliomagenesis has been unclear. Results identify a positive correlation of SCF expression with increasing glioma grade which supports a role for SCF in tumor angiogenesis in the brain.", "type": "Expression profiling by array", "pubmed_id": "16616334", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "180", "value_type": "count", "reference_series": "GSE4290", "order": "none", "update_date": "Jun 13 2006", "subsets": [ { "dataset_id": "GDS1962", "description": "non-tumor", "sample_id": [ "GSM97800", "GSM97803", "GSM97804", "GSM97805", "GSM97807", "GSM97809", "GSM97811", "GSM97812", "GSM97816", "GSM97817", "GSM97820", "GSM97825", "GSM97827", "GSM97828", "GSM97833", "GSM97834", "GSM97840", "GSM97846", "GSM97848", "GSM97849", "GSM97850", "GSM97853", "GSM97855" ], "type": "disease state", "id": "GDS1962_1" }, { "dataset_id": "GDS1962", "description": "astrocytomas", "sample_id": [ "GSM97793", "GSM97795", "GSM97802", "GSM97810", "GSM97815", "GSM97837", "GSM97843", "GSM97878", "GSM97890", "GSM97899", "GSM97910", "GSM97913", "GSM97916", "GSM97920", "GSM97921", "GSM97927", "GSM97932", "GSM97937", "GSM97939", "GSM97941", "GSM97943", "GSM97951", "GSM97957", "GSM97958", "GSM97960", "GSM97972" ], "type": "disease state", "id": "GDS1962_2" }, { "dataset_id": "GDS1962", "description": "glioblastomas", "sample_id": [ "GSM97794", "GSM97796", "GSM97797", "GSM97798", "GSM97801", "GSM97806", "GSM97808", "GSM97813", "GSM97814", "GSM97818", "GSM97819", "GSM97821", "GSM97829", "GSM97832", "GSM97839", "GSM97844", "GSM97847", "GSM97851", "GSM97852", "GSM97856", "GSM97859", "GSM97861", "GSM97863", "GSM97869", "GSM97870", "GSM97871", "GSM97877", "GSM97882", "GSM97885", "GSM97886", "GSM97887", "GSM97888", "GSM97889", "GSM97891", "GSM97892", "GSM97893", "GSM97894", "GSM97895", "GSM97896", "GSM97898", "GSM97903", "GSM97905", "GSM97906", "GSM97908", "GSM97912", "GSM97914", "GSM97915", "GSM97917", "GSM97918", "GSM97919", "GSM97922", "GSM97924", "GSM97926", "GSM97930", "GSM97931", "GSM97935", "GSM97936", "GSM97938", "GSM97940", "GSM97942", "GSM97945", "GSM97946", "GSM97948", "GSM97950", "GSM97952", "GSM97953", "GSM97954", "GSM97955", "GSM97959", "GSM97961", "GSM97963", "GSM97965", "GSM97966", "GSM97967", "GSM97968", "GSM97969", "GSM97971", "GSM97826", "GSM97836", "GSM97858", "GSM97879" ], "type": "disease state", "id": "GDS1962_3" }, { "dataset_id": "GDS1962", "description": "oligodendrogliomas", "sample_id": [ "GSM97799", "GSM97822", "GSM97823", "GSM97824", "GSM97830", "GSM97831", "GSM97835", "GSM97838", "GSM97841", "GSM97842", "GSM97845", "GSM97854", "GSM97857", "GSM97860", "GSM97862", "GSM97864", "GSM97865", "GSM97866", "GSM97867", "GSM97868", "GSM97872", "GSM97873", "GSM97874", "GSM97875", "GSM97876", "GSM97880", "GSM97881", "GSM97883", "GSM97884", "GSM97897", "GSM97900", "GSM97901", "GSM97902", "GSM97904", "GSM97907", "GSM97909", "GSM97911", "GSM97923", "GSM97925", "GSM97928", "GSM97929", "GSM97933", "GSM97934", "GSM97944", "GSM97947", "GSM97949", "GSM97956", "GSM97962", "GSM97964", "GSM97970" ], "type": "disease state", "id": "GDS1962_4" }, { "dataset_id": "GDS1962", "description": "not applicable", "sample_id": [ "GSM97800", "GSM97803", "GSM97804", "GSM97805", "GSM97807", "GSM97809", "GSM97811", "GSM97812", "GSM97816", "GSM97817", "GSM97820", "GSM97825", "GSM97827", "GSM97828", "GSM97833", "GSM97834", "GSM97840", "GSM97846", "GSM97848", "GSM97849", "GSM97850", "GSM97853", "GSM97855" ], "type": "tissue", "id": "GDS1962_5" }, { "dataset_id": "GDS1962", "description": "tumor grade II", "sample_id": [ "GSM97799", "GSM97823", "GSM97824", "GSM97830", "GSM97835", "GSM97838", "GSM97841", "GSM97842", "GSM97854", "GSM97857", "GSM97860", "GSM97862", "GSM97864", "GSM97866", "GSM97868", "GSM97872", "GSM97873", "GSM97874", "GSM97875", "GSM97876", "GSM97878", "GSM97880", "GSM97881", "GSM97884", "GSM97901", "GSM97902", "GSM97909", "GSM97911", "GSM97913", "GSM97923", "GSM97928", "GSM97929", "GSM97932", "GSM97933", "GSM97934", "GSM97939", "GSM97944", "GSM97949", "GSM97951", "GSM97956", "GSM97957", "GSM97962", "GSM97964", "GSM97970", "GSM97972" ], "type": "tissue", "id": "GDS1962_6" }, { "dataset_id": "GDS1962", "description": "tumor grade III", "sample_id": [ "GSM97793", "GSM97795", "GSM97802", "GSM97810", "GSM97815", "GSM97822", "GSM97831", "GSM97837", "GSM97843", "GSM97845", "GSM97865", "GSM97867", "GSM97883", "GSM97890", "GSM97897", "GSM97899", "GSM97900", "GSM97904", "GSM97907", "GSM97910", "GSM97916", "GSM97920", "GSM97921", "GSM97925", "GSM97927", "GSM97937", "GSM97941", "GSM97943", "GSM97947", "GSM97958", "GSM97960" ], "type": "tissue", "id": "GDS1962_7" }, { "dataset_id": "GDS1962", "description": "tumor grade IV", "sample_id": [ "GSM97794", "GSM97796", "GSM97797", "GSM97798", "GSM97801", "GSM97806", "GSM97808", "GSM97813", "GSM97814", "GSM97818", "GSM97819", "GSM97821", "GSM97829", "GSM97832", "GSM97839", "GSM97844", "GSM97847", "GSM97851", "GSM97852", "GSM97856", "GSM97859", "GSM97861", "GSM97863", "GSM97869", "GSM97870", "GSM97871", "GSM97877", "GSM97882", "GSM97885", "GSM97886", "GSM97887", "GSM97888", "GSM97889", "GSM97891", "GSM97892", "GSM97893", "GSM97894", "GSM97895", "GSM97896", "GSM97898", "GSM97903", "GSM97905", "GSM97906", "GSM97908", "GSM97912", "GSM97914", "GSM97915", "GSM97917", "GSM97918", "GSM97919", "GSM97922", "GSM97924", "GSM97926", "GSM97930", "GSM97931", "GSM97935", "GSM97936", "GSM97938", "GSM97940", "GSM97942", "GSM97945", "GSM97946", "GSM97948", "GSM97950", "GSM97952", "GSM97953", "GSM97954", "GSM97955", "GSM97959", "GSM97961", "GSM97963", "GSM97965", "GSM97966", "GSM97967", "GSM97968", "GSM97969", "GSM97971", "GSM97826", "GSM97836", "GSM97858", "GSM97879" ], "type": "tissue", "id": "GDS1962_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1962", "version": 1.0, "instances": "180", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1962.tab", "compression": "gz" } ], [ [ "GDS1963.tab" ], { "title": "DNA gyrase inhibition effect on recA, topA, and dnaC mutants: time course", "description": "Analysis of recA, topA, and dnaC single mutants at various time points up to 20 minutes following treatment with norfloxacin to inhibit DNA gyrase. recA, topA, and dnaC mutants are deficient DNA repair, DNA relaxation and DNA replication, respectively.", "type": "Expression profiling by array", "pubmed_id": "17009874", "platform": "GPL1436", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6144", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log ratio", "reference_series": "GSE4408", "order": "none", "update_date": "Mar 06 2007", "subsets": [ { "dataset_id": "GDS1963", "description": "wild type", "sample_id": [ "GSM99380", "GSM99384", "GSM99386", "GSM99389" ], "type": "genotype/variation", "id": "GDS1963_1" }, { "dataset_id": "GDS1963", "description": "recA mutant", "sample_id": [ "GSM99390", "GSM99391", "GSM99392", "GSM99393" ], "type": "genotype/variation", "id": "GDS1963_2" }, { "dataset_id": "GDS1963", "description": "topA mutant", "sample_id": [ "GSM99394", "GSM99395", "GSM99396", "GSM99397" ], "type": "genotype/variation", "id": "GDS1963_3" }, { "dataset_id": "GDS1963", "description": "dnaC mutant", "sample_id": [ "GSM99398", "GSM99399", "GSM99400", "GSM99401" ], "type": "genotype/variation", "id": "GDS1963_4" }, { "dataset_id": "GDS1963", "description": "5 min", "sample_id": [ "GSM99380", "GSM99390", "GSM99394", "GSM99398" ], "type": "time", "id": "GDS1963_5" }, { "dataset_id": "GDS1963", "description": "10 min", "sample_id": [ "GSM99384", "GSM99391", "GSM99395", "GSM99399" ], "type": "time", "id": "GDS1963_6" }, { "dataset_id": "GDS1963", "description": "15 min", "sample_id": [ "GSM99386", "GSM99392", "GSM99396", "GSM99400" ], "type": "time", "id": "GDS1963_7" }, { "dataset_id": "GDS1963", "description": "20 min", "sample_id": [ "GSM99389", "GSM99393", "GSM99397", "GSM99401" ], "type": "time", "id": "GDS1963_8" } ], "taxid": "562", "genes": 4368, "aggregation_function": "mean", "name": "GDS1963", "version": 1.0, "instances": "16", "variables": 4371, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1963.tab", "compression": "gz" } ], [ [ "GDS1964.tab" ], { "title": "Melanotransferrin effect on brain", "description": "Analysis of brain from melanotransferrin (MTf) knockout mutants. MTf or melanoma tumor antigen p97 is a membrane bound iron binding transferrin homolog highly expressed in melanomas and at lower levels in normal tissues. Results provide insight into the function of MTf.", "type": "Expression profiling by array", "pubmed_id": [ "16704991", "17449903" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4523", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1964", "description": "wild type", "sample_id": [ "GSM101416", "GSM101417" ], "type": "genotype/variation", "id": "GDS1964_1" }, { "dataset_id": "GDS1964", "description": "melanotransferrin knockout", "sample_id": [ "GSM101412", "GSM101413", "GSM101414", "GSM101415" ], "type": "genotype/variation", "id": "GDS1964_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1964", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1964.tab", "compression": "gz" } ], [ [ "GDS1965.tab" ], { "title": "Melanocyte to melanoma transformation", "description": "Expression profiling of normal melanocytes, primary melanoma cells, and metastatic melanoma cells. Results provide insight into changes in advanced melanoma relative to normal melanocytes and reveal new targets that can be used in assessing prognosis, staging, and therapy of melanoma patients.", "type": "Expression profiling by array", "pubmed_id": "15289333", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4570", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1965", "description": "melanoma", "sample_id": [ "GSM102065", "GSM102066", "GSM102067", "GSM102068", "GSM102069", "GSM102070" ], "type": "cell type", "id": "GDS1965_1" }, { "dataset_id": "GDS1965", "description": "melanocyte", "sample_id": [ "GSM102072", "GSM102073" ], "type": "cell type", "id": "GDS1965_2" }, { "dataset_id": "GDS1965", "description": "normal", "sample_id": [ "GSM102072", "GSM102073" ], "type": "disease state", "id": "GDS1965_3" }, { "dataset_id": "GDS1965", "description": "primary", "sample_id": [ "GSM102065" ], "type": "disease state", "id": "GDS1965_4" }, { "dataset_id": "GDS1965", "description": "metastatic", "sample_id": [ "GSM102066", "GSM102067", "GSM102068", "GSM102069", "GSM102070" ], "type": "disease state", "id": "GDS1965_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1965", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1965.tab", "compression": "gz" } ], [ [ "GDS1968.tab" ], { "title": "Endothelial cell response to hypoxia and subsequent reoxygenation", "description": "Expression profiling of umbilical vein endothelial cells (HUVECs) subjected to hypoxia for 1 hour and subsequent reoxygenation for various lengths of time up to 24 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL981", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23232", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "21", "value_type": "log2 ratio", "reference_series": "GSE1041", "order": "none", "update_date": "Apr 27 2006", "subsets": [ { "dataset_id": "GDS1968", "description": "no hypoxia", "sample_id": [ "GSM16836", "GSM16837", "GSM16838", "GSM16839" ], "type": "stress", "id": "GDS1968_1" }, { "dataset_id": "GDS1968", "description": "hypoxia", "sample_id": [ "GSM16784", "GSM16814", "GSM16815", "GSM16816", "GSM16817", "GSM16818", "GSM16819", "GSM16821", "GSM16824", "GSM16826", "GSM16828", "GSM16830", "GSM16831", "GSM16832", "GSM16833", "GSM16834", "GSM16835" ], "type": "stress", "id": "GDS1968_2" }, { "dataset_id": "GDS1968", "description": "no reoxygenation", "sample_id": [ "GSM16836", "GSM16837", "GSM16838", "GSM16839", "GSM16784", "GSM16814", "GSM16815", "GSM16816" ], "type": "protocol", "id": "GDS1968_3" }, { "dataset_id": "GDS1968", "description": "reoxygenation", "sample_id": [ "GSM16817", "GSM16818", "GSM16819", "GSM16821", "GSM16824", "GSM16826", "GSM16828", "GSM16830", "GSM16831", "GSM16832", "GSM16833", "GSM16834", "GSM16835" ], "type": "protocol", "id": "GDS1968_4" }, { "dataset_id": "GDS1968", "description": "0 h", "sample_id": [ "GSM16836", "GSM16837", "GSM16838", "GSM16839", "GSM16784", "GSM16814", "GSM16815", "GSM16816" ], "type": "time", "id": "GDS1968_5" }, { "dataset_id": "GDS1968", "description": "3 h", "sample_id": [ "GSM16817", "GSM16818", "GSM16819" ], "type": "time", "id": "GDS1968_6" }, { "dataset_id": "GDS1968", "description": "5 h", "sample_id": [ "GSM16821", "GSM16824", "GSM16826" ], "type": "time", "id": "GDS1968_7" }, { "dataset_id": "GDS1968", "description": "12 h", "sample_id": [ "GSM16828", "GSM16830", "GSM16831", "GSM16832" ], "type": "time", "id": "GDS1968_8" }, { "dataset_id": "GDS1968", "description": "24 h", "sample_id": [ "GSM16833", "GSM16834", "GSM16835" ], "type": "time", "id": "GDS1968_9" } ], "taxid": "9606", "genes": 19364, "aggregation_function": "mean", "name": "GDS1968", "version": 1.0, "instances": "21", "variables": 19368, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1968.tab", "compression": "gz" } ], [ [ "GDS1972.tab" ], { "title": "RNAlater preservative effect on uterine myometrium: time course", "description": "Analysis of uterine myometrial tissue specimens stored in RNAlater preservative for 24 or 74 hours at room temperature. Results indicate RNALater did not contribute any systematic shift in quantitative RNA expression results relative to alternative tissue processing methods (fresh, snap-frozen).", "type": "Expression profiling by array", "pubmed_id": "15537428", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1296", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1972", "description": "fresh", "sample_id": [ "GSM21183", "GSM21184", "GSM21191", "GSM21192", "GSM21199", "GSM21200" ], "type": "protocol", "id": "GDS1972_1" }, { "dataset_id": "GDS1972", "description": "snap-frozen", "sample_id": [ "GSM21185", "GSM21187", "GSM21193", "GSM21194", "GSM21201", "GSM21202" ], "type": "protocol", "id": "GDS1972_2" }, { "dataset_id": "GDS1972", "description": "RNAlater", "sample_id": [ "GSM21179", "GSM21180", "GSM21181", "GSM21182", "GSM21186", "GSM21188", "GSM21189", "GSM21190", "GSM21195", "GSM21196", "GSM21197", "GSM21198" ], "type": "protocol", "id": "GDS1972_3" }, { "dataset_id": "GDS1972", "description": "control", "sample_id": [ "GSM21183", "GSM21184", "GSM21191", "GSM21192", "GSM21199", "GSM21200", "GSM21185", "GSM21187", "GSM21193", "GSM21194", "GSM21201", "GSM21202" ], "type": "time", "id": "GDS1972_4" }, { "dataset_id": "GDS1972", "description": "24 h", "sample_id": [ "GSM21179", "GSM21180", "GSM21186", "GSM21188", "GSM21195", "GSM21196" ], "type": "time", "id": "GDS1972_5" }, { "dataset_id": "GDS1972", "description": "72 h", "sample_id": [ "GSM21181", "GSM21182", "GSM21189", "GSM21190", "GSM21197", "GSM21198" ], "type": "time", "id": "GDS1972_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1972", "version": 1.0, "instances": "24", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1972.tab", "compression": "gz" } ], [ [ "GDS1973.tab" ], { "title": "Various prostate cell types", "description": "Analysis of basal, luminal secretory, stromal fibromuscular, and endothelial cells of the prostate. Cell types separated with magnetic cell sorting (MACS) based on cell-type specific cluster designation (CD) antigens. Results identify gene expression signatures at the level of individual cell types.", "type": "Expression profiling by array", "pubmed_id": "16638148", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3998", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1973", "description": "endothelial", "sample_id": [ "GSM91313", "GSM91320", "GSM91321", "GSM91322", "GSM91323" ], "type": "cell type", "id": "GDS1973_1" }, { "dataset_id": "GDS1973", "description": "basal", "sample_id": [ "GSM91306", "GSM91307", "GSM91314", "GSM91315", "GSM91316" ], "type": "cell type", "id": "GDS1973_2" }, { "dataset_id": "GDS1973", "description": "luminal secretory", "sample_id": [ "GSM91304", "GSM91305", "GSM91311", "GSM91312", "GSM91319" ], "type": "cell type", "id": "GDS1973_3" }, { "dataset_id": "GDS1973", "description": "stromal fibromuscular", "sample_id": [ "GSM91308", "GSM91309", "GSM91310", "GSM91317", "GSM91318" ], "type": "cell type", "id": "GDS1973_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1973", "version": 1.0, "instances": "20", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1973.tab", "compression": "gz" } ], [ [ "GDS1974.tab" ], { "title": "Keratinocyte response to GLI1 and GLI2 induction: time course", "description": "Analysis of keratinocyte HaCaT cells at 24 and 72 hours following induction of GLI1 or a constitutively active form of GLI2 from a tetracycline inducible promoter. GLI transcription factors mediate the hedgehog signal in development and carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "16434164", "platform": "GPL1260", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "11520", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE1434", "order": "none", "update_date": "Apr 28 2006", "subsets": [ { "dataset_id": "GDS1974", "description": "control", "sample_id": [ "GSM23862", "GSM23864", "GSM23866", "GSM23868", "GSM23870", "GSM23875", "GSM23886", "GSM23892", "GSM23935", "GSM23937", "GSM23939", "GSM23941", "GSM23943", "GSM23945", "GSM23947", "GSM23949" ], "type": "agent", "id": "GDS1974_1" }, { "dataset_id": "GDS1974", "description": "tetracycline", "sample_id": [ "GSM23863", "GSM23865", "GSM23867", "GSM23869", "GSM23871", "GSM23882", "GSM23888", "GSM23894", "GSM23936", "GSM23938", "GSM23940", "GSM23942", "GSM23944", "GSM23946", "GSM23948", "GSM23950" ], "type": "agent", "id": "GDS1974_2" }, { "dataset_id": "GDS1974", "description": "GLI1 transgenic", "sample_id": [ "GSM23862", "GSM23863", "GSM23864", "GSM23865", "GSM23866", "GSM23867", "GSM23868", "GSM23869", "GSM23935", "GSM23936", "GSM23937", "GSM23938", "GSM23939", "GSM23940", "GSM23941", "GSM23942" ], "type": "cell line", "id": "GDS1974_3" }, { "dataset_id": "GDS1974", "description": "GLI2 transgenic", "sample_id": [ "GSM23870", "GSM23871", "GSM23875", "GSM23882", "GSM23886", "GSM23888", "GSM23892", "GSM23894", "GSM23943", "GSM23944", "GSM23945", "GSM23946", "GSM23947", "GSM23948", "GSM23949", "GSM23950" ], "type": "cell line", "id": "GDS1974_4" }, { "dataset_id": "GDS1974", "description": "24 h", "sample_id": [ "GSM23862", "GSM23863", "GSM23864", "GSM23865", "GSM23870", "GSM23871", "GSM23875", "GSM23882", "GSM23935", "GSM23936", "GSM23937", "GSM23938", "GSM23943", "GSM23944", "GSM23945", "GSM23946" ], "type": "time", "id": "GDS1974_5" }, { "dataset_id": "GDS1974", "description": "72 h", "sample_id": [ "GSM23866", "GSM23867", "GSM23868", "GSM23869", "GSM23886", "GSM23888", "GSM23892", "GSM23894", "GSM23939", "GSM23940", "GSM23941", "GSM23942", "GSM23947", "GSM23948", "GSM23949", "GSM23950" ], "type": "time", "id": "GDS1974_6" } ], "taxid": "9606", "genes": 9221, "aggregation_function": "mean", "name": "GDS1974", "version": 1.0, "instances": "32", "variables": 9225, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1974.tab", "compression": "gz" } ], [ [ "GDS1975.tab" ], { "title": "Gliomas of grades III and IV (HG-U133A)", "description": "Analysis of grades III and IV gliomas of various histologic types. Results used to develop a gene-expression based, histology independent-classification scheme, and provide insight into the biology of gliomas.", "type": "Expression profiling by array", "pubmed_id": "15374961", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "85", "value_type": "count", "reference_series": "GSE4412", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1975", "description": "grade III glioma", "sample_id": [ "GSM99566", "GSM99574", "GSM99592", "GSM99594", "GSM99496", "GSM99502", "GSM99504", "GSM99506", "GSM99568", "GSM99596", "GSM99600", "GSM99468", "GSM99498", "GSM99500", "GSM99508", "GSM99570", "GSM99598", "GSM99458", "GSM99460", "GSM99510", "GSM99512", "GSM99514", "GSM99516", "GSM99518", "GSM99520", "GSM99522" ], "type": "disease state", "id": "GDS1975_1" }, { "dataset_id": "GDS1975", "description": "grade IV glioma", "sample_id": [ "GSM99432", "GSM99434", "GSM99436", "GSM99438", "GSM99440", "GSM99442", "GSM99444", "GSM99446", "GSM99448", "GSM99450", "GSM99452", "GSM99454", "GSM99456", "GSM99462", "GSM99464", "GSM99466", "GSM99470", "GSM99472", "GSM99474", "GSM99476", "GSM99478", "GSM99480", "GSM99482", "GSM99484", "GSM99486", "GSM99488", "GSM99490", "GSM99492", "GSM99494", "GSM99524", "GSM99526", "GSM99528", "GSM99530", "GSM99532", "GSM99534", "GSM99536", "GSM99538", "GSM99540", "GSM99542", "GSM99544", "GSM99546", "GSM99548", "GSM99550", "GSM99552", "GSM99554", "GSM99556", "GSM99558", "GSM99560", "GSM99562", "GSM99564", "GSM99572", "GSM99576", "GSM99578", "GSM99580", "GSM99582", "GSM99584", "GSM99586", "GSM99588", "GSM99590" ], "type": "disease state", "id": "GDS1975_2" }, { "dataset_id": "GDS1975", "description": "anaplastic astrocytoma", "sample_id": [ "GSM99566", "GSM99574", "GSM99592", "GSM99594", "GSM99496", "GSM99502", "GSM99504", "GSM99506" ], "type": "cell type", "id": "GDS1975_3" }, { "dataset_id": "GDS1975", "description": "anaplastic mixed oligo-astrocytoma", "sample_id": [ "GSM99568", "GSM99596", "GSM99600", "GSM99468", "GSM99498", "GSM99500", "GSM99508" ], "type": "cell type", "id": "GDS1975_4" }, { "dataset_id": "GDS1975", "description": "anaplastic oligodendroglioma", "sample_id": [ "GSM99570", "GSM99598", "GSM99458", "GSM99460", "GSM99510", "GSM99512", "GSM99514", "GSM99516", "GSM99518", "GSM99520", "GSM99522" ], "type": "cell type", "id": "GDS1975_5" }, { "dataset_id": "GDS1975", "description": "glioblastoma", "sample_id": [ "GSM99432", "GSM99434", "GSM99436", "GSM99438", "GSM99440", "GSM99442", "GSM99444", "GSM99446", "GSM99448", "GSM99450", "GSM99452", "GSM99454", "GSM99456", "GSM99462", "GSM99464", "GSM99466", "GSM99470", "GSM99472", "GSM99474", "GSM99476", "GSM99478", "GSM99480", "GSM99482", "GSM99484", "GSM99486", "GSM99488", "GSM99490", "GSM99492", "GSM99494", "GSM99524", "GSM99526", "GSM99528", "GSM99530", "GSM99532", "GSM99534", "GSM99536", "GSM99538", "GSM99540", "GSM99542", "GSM99544", "GSM99546", "GSM99548", "GSM99550", "GSM99552", "GSM99554", "GSM99556", "GSM99558", "GSM99560", "GSM99562", "GSM99564", "GSM99572", "GSM99576", "GSM99578", "GSM99580", "GSM99582", "GSM99584", "GSM99586", "GSM99588", "GSM99590" ], "type": "cell type", "id": "GDS1975_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1975", "version": 1.0, "instances": "85", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1975.tab", "compression": "gz" } ], [ [ "GDS1976.tab" ], { "title": "Gliomas of grades III and IV (HG-U133B)", "description": "Analysis of grades III and IV gliomas of various histologic types. Results used to develop a gene-expression based, histology independent-classification scheme, and provide insight into the biology of gliomas.", "type": "Expression profiling by array", "pubmed_id": "15374961", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "85", "value_type": "count", "reference_series": "GSE4412", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1976", "description": "grade III glioma", "sample_id": [ "GSM99567", "GSM99575", "GSM99593", "GSM99595", "GSM99497", "GSM99503", "GSM99505", "GSM99507", "GSM99569", "GSM99597", "GSM99601", "GSM99469", "GSM99499", "GSM99501", "GSM99509", "GSM99571", "GSM99599", "GSM99459", "GSM99461", "GSM99511", "GSM99513", "GSM99515", "GSM99517", "GSM99519", "GSM99521", "GSM99523" ], "type": "disease state", "id": "GDS1976_1" }, { "dataset_id": "GDS1976", "description": "grade IV glioma", "sample_id": [ "GSM99433", "GSM99435", "GSM99437", "GSM99439", "GSM99441", "GSM99443", "GSM99445", "GSM99447", "GSM99449", "GSM99451", "GSM99453", "GSM99455", "GSM99457", "GSM99463", "GSM99465", "GSM99467", "GSM99471", "GSM99473", "GSM99475", "GSM99477", "GSM99479", "GSM99481", "GSM99483", "GSM99485", "GSM99487", "GSM99489", "GSM99491", "GSM99493", "GSM99495", "GSM99525", "GSM99527", "GSM99529", "GSM99531", "GSM99533", "GSM99535", "GSM99537", "GSM99539", "GSM99541", "GSM99543", "GSM99545", "GSM99547", "GSM99549", "GSM99551", "GSM99553", "GSM99555", "GSM99557", "GSM99559", "GSM99561", "GSM99563", "GSM99565", "GSM99573", "GSM99577", "GSM99579", "GSM99581", "GSM99583", "GSM99585", "GSM99587", "GSM99589", "GSM99591" ], "type": "disease state", "id": "GDS1976_2" }, { "dataset_id": "GDS1976", "description": "anaplastic astrocytoma", "sample_id": [ "GSM99567", "GSM99575", "GSM99593", "GSM99595", "GSM99497", "GSM99503", "GSM99505", "GSM99507" ], "type": "cell type", "id": "GDS1976_3" }, { "dataset_id": "GDS1976", "description": "anaplastic mixed oligo-astrocytoma", "sample_id": [ "GSM99569", "GSM99597", "GSM99601", "GSM99469", "GSM99499", "GSM99501", "GSM99509" ], "type": "cell type", "id": "GDS1976_4" }, { "dataset_id": "GDS1976", "description": "anaplastic oligodendroglioma", "sample_id": [ "GSM99571", "GSM99599", "GSM99459", "GSM99461", "GSM99511", "GSM99513", "GSM99515", "GSM99517", "GSM99519", "GSM99521", "GSM99523" ], "type": "cell type", "id": "GDS1976_5" }, { "dataset_id": "GDS1976", "description": "glioblastoma", "sample_id": [ "GSM99433", "GSM99435", "GSM99437", "GSM99439", "GSM99441", "GSM99443", "GSM99445", "GSM99447", "GSM99449", "GSM99451", "GSM99453", "GSM99455", "GSM99457", "GSM99463", "GSM99465", "GSM99467", "GSM99471", "GSM99473", "GSM99475", "GSM99477", "GSM99479", "GSM99481", "GSM99483", "GSM99485", "GSM99487", "GSM99489", "GSM99491", "GSM99493", "GSM99495", "GSM99525", "GSM99527", "GSM99529", "GSM99531", "GSM99533", "GSM99535", "GSM99537", "GSM99539", "GSM99541", "GSM99543", "GSM99545", "GSM99547", "GSM99549", "GSM99551", "GSM99553", "GSM99555", "GSM99557", "GSM99559", "GSM99561", "GSM99563", "GSM99565", "GSM99573", "GSM99577", "GSM99579", "GSM99581", "GSM99583", "GSM99585", "GSM99587", "GSM99589", "GSM99591" ], "type": "cell type", "id": "GDS1976_6" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS1976", "version": 1.0, "instances": "85", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1976.tab", "compression": "gz" } ], [ [ "GDS1977.tab" ], { "title": "Retinal determination protein Eyeless ectopic expression", "description": "Analysis of leg, wing, and antenna imaginal discs ectopically expressing the retinal determination protein (RD) Eyeless (Ey) in the atonal wild-type or mutant background. Genes that depend on atonal for expression are involved in processes occurring after RD. Results identify targets of Ey.", "type": "Expression profiling by array", "pubmed_id": "16533912", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE4008", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1977", "description": "eye discs", "sample_id": [ "GSM91570", "GSM91585", "GSM91609", "GSM91616" ], "type": "tissue", "id": "GDS1977_1" }, { "dataset_id": "GDS1977", "description": "leg discs", "sample_id": [ "GSM91617", "GSM91618", "GSM91619", "GSM91472", "GSM91473", "GSM91474", "GSM91478", "GSM91479", "GSM91480" ], "type": "tissue", "id": "GDS1977_2" }, { "dataset_id": "GDS1977", "description": "antennal discs", "sample_id": [ "GSM91484", "GSM91491", "GSM91515", "GSM91475", "GSM91476", "GSM91477" ], "type": "tissue", "id": "GDS1977_3" }, { "dataset_id": "GDS1977", "description": "wing discs", "sample_id": [ "GSM91620", "GSM91621", "GSM91622", "GSM91481", "GSM91482", "GSM91483" ], "type": "tissue", "id": "GDS1977_4" }, { "dataset_id": "GDS1977", "description": "wild-type", "sample_id": [ "GSM91484", "GSM91491", "GSM91515", "GSM91570", "GSM91585", "GSM91609", "GSM91616", "GSM91617", "GSM91618", "GSM91619", "GSM91620", "GSM91621", "GSM91622" ], "type": "genotype/variation", "id": "GDS1977_5" }, { "dataset_id": "GDS1977", "description": "eyeless ectopic expression", "sample_id": [ "GSM91475", "GSM91476", "GSM91477", "GSM91478", "GSM91479", "GSM91480", "GSM91481", "GSM91482", "GSM91483" ], "type": "genotype/variation", "id": "GDS1977_6" }, { "dataset_id": "GDS1977", "description": "ato mutant, eyeless ectopic expression", "sample_id": [ "GSM91472", "GSM91473", "GSM91474" ], "type": "genotype/variation", "id": "GDS1977_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS1977", "version": 1.0, "instances": "25", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1977.tab", "compression": "gz" } ], [ [ "GDS1978.tab" ], { "title": "Zinc-finger protein basonuclin knockdown effect on oocytes", "description": "Analysis of oocytes following RNAi knockdown of basonuclin (Bnc1), a zinc-finger protein found in abundance in oocytes. The Bnc1 gene qualifies as a maternal-effect gene because the source of pre-implantation embryonic Bnc1 is maternal. Results provide insight into the function of Bnc1.", "type": "Expression profiling by array", "pubmed_id": "16624857", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4029", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1978", "description": "control", "sample_id": [ "GSM92221", "GSM92222", "GSM92223", "GSM92224" ], "type": "protocol", "id": "GDS1978_1" }, { "dataset_id": "GDS1978", "description": "basonuclin knockdown", "sample_id": [ "GSM92225", "GSM92226", "GSM92227", "GSM92228", "GSM92229", "GSM92230" ], "type": "protocol", "id": "GDS1978_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1978", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1978.tab", "compression": "gz" } ], [ [ "GDS1979.tab" ], { "title": "Amyloid precursor protein intracellular domain effect on neural cells", "description": "Analysis of neural cells induced to express amyloid precursor protein (APP) intracellular domain (AICD) or the combination of AICD and its co-activator Fe65. Secretase processing of APP produces beta-amyloid, the main constituent of Alzheimer plaques, and AICD. Results identify target genes of AICD.", "type": "Expression profiling by array", "pubmed_id": "17093061", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4097", "order": "none", "update_date": "Jun 14 2006", "subsets": [ { "dataset_id": "GDS1979", "description": "AICD induction", "sample_id": [ "GSM93711", "GSM93713" ], "type": "protocol", "id": "GDS1979_1" }, { "dataset_id": "GDS1979", "description": "AICD and Fe65 induction", "sample_id": [ "GSM93715" ], "type": "protocol", "id": "GDS1979_2" }, { "dataset_id": "GDS1979", "description": "AICD control", "sample_id": [ "GSM93710", "GSM93712" ], "type": "protocol", "id": "GDS1979_3" }, { "dataset_id": "GDS1979", "description": "AICD and Fe65 control", "sample_id": [ "GSM93714" ], "type": "protocol", "id": "GDS1979_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS1979", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1979.tab", "compression": "gz" } ], [ [ "GDS198.tab" ], { "title": "Inflammatory myopathy", "description": "Molecular profiles of muscle tissue in patients with inflammatory myopathies.", "type": "Expression profiling by array", "pubmed_id": "12391344", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE281", "order": "none", "update_date": "Apr 08 2003", "subsets": [ { "dataset_id": "GDS198", "description": "GEIM1", "sample_id": [ "GSM3710" ], "type": "specimen", "id": "GDS198_1" }, { "dataset_id": "GDS198", "description": "GEIM12", "sample_id": [ "GSM3711" ], "type": "specimen", "id": "GDS198_2" }, { "dataset_id": "GDS198", "description": "GEIM16", "sample_id": [ "GSM3712" ], "type": "specimen", "id": "GDS198_3" }, { "dataset_id": "GDS198", "description": "GEIM17", "sample_id": [ "GSM3713" ], "type": "specimen", "id": "GDS198_4" }, { "dataset_id": "GDS198", "description": "GEIM20", "sample_id": [ "GSM3714" ], "type": "specimen", "id": "GDS198_5" }, { "dataset_id": "GDS198", "description": "GEIM21", "sample_id": [ "GSM3715" ], "type": "specimen", "id": "GDS198_6" }, { "dataset_id": "GDS198", "description": "GEIM27", "sample_id": [ "GSM3716" ], "type": "specimen", "id": "GDS198_7" }, { "dataset_id": "GDS198", "description": "GEIM3", "sample_id": [ "GSM3717" ], "type": "specimen", "id": "GDS198_8" }, { "dataset_id": "GDS198", "description": "GEIM30", "sample_id": [ "GSM3718" ], "type": "specimen", "id": "GDS198_9" }, { "dataset_id": "GDS198", "description": "GEIM4", "sample_id": [ "GSM3719" ], "type": "specimen", "id": "GDS198_10" }, { "dataset_id": "GDS198", "description": "GEIM7", "sample_id": [ "GSM3720" ], "type": "specimen", "id": "GDS198_11" }, { "dataset_id": "GDS198", "description": "GEIM9", "sample_id": [ "GSM3721" ], "type": "specimen", "id": "GDS198_12" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS198", "version": 1.0, "instances": "12", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS198.tab", "compression": "gz" } ], [ [ "GDS1980.tab" ], { "title": "Endothelin-1 effect on dermal fibroblasts", "description": "Anlaysis of primary dermal fibroblasts treated with exogenous endothelin-1 (ET1) peptide for 24 hours. ET1 has been implicated in the pathogenesis of fibrotic and inflammatory diseases. Results suggest that stable silencing of Et1 is important for the phenotypic stability of dermal fibroblasts.", "type": "Expression profiling by array", "pubmed_id": "16870175", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4695", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1980", "description": "control", "sample_id": [ "GSM106139", "GSM106141", "GSM106149" ], "type": "agent", "id": "GDS1980_1" }, { "dataset_id": "GDS1980", "description": "endothelin-1", "sample_id": [ "GSM106140", "GSM106148", "GSM106150" ], "type": "agent", "id": "GDS1980_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS1980", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1980.tab", "compression": "gz" } ], [ [ "GDS1981.tab" ], { "title": "Ras-cAMP pathway perturbation", "description": "Analysis of cells following perturbation of the Ras-cAMP pathway by disrupting or constitutively activating cAMP signaling, or varying the concentration of cAMP. Results provide insight into the flow of information across a genome.", "type": "Expression profiling by array", "pubmed_id": "16533914", "platform": "GPL2622", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6178", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2927", "order": "none", "update_date": "Aug 22 2006", "subsets": [ { "dataset_id": "GDS1981", "description": "control for ras1/ras2/pde2 deletion", "sample_id": [ "GSM63861", "GSM63862", "GSM63864", "GSM63865" ], "type": "protocol", "id": "GDS1981_1" }, { "dataset_id": "GDS1981", "description": "cAMP synthesis/degradation defect", "sample_id": [ "GSM63866", "GSM63867", "GSM63868", "GSM63870", "GSM63871", "GSM63872" ], "type": "protocol", "id": "GDS1981_2" }, { "dataset_id": "GDS1981", "description": "cAMP signaling disruption", "sample_id": [ "GSM63873", "GSM63874", "GSM63875", "GSM63876", "GSM63877", "GSM63878", "GSM63881", "GSM63882" ], "type": "protocol", "id": "GDS1981_3" }, { "dataset_id": "GDS1981", "description": "cAMP signaling constitutively activated", "sample_id": [ "GSM63879", "GSM63880" ], "type": "protocol", "id": "GDS1981_4" }, { "dataset_id": "GDS1981", "description": "wild-type", "sample_id": [ "GSM63861", "GSM63862", "GSM63864", "GSM63865" ], "type": "genotype/variation", "id": "GDS1981_5" }, { "dataset_id": "GDS1981", "description": "ras1/ras2/pde2 deletion", "sample_id": [ "GSM63866", "GSM63867", "GSM63868", "GSM63870", "GSM63871", "GSM63872" ], "type": "genotype/variation", "id": "GDS1981_6" }, { "dataset_id": "GDS1981", "description": "ira1 deletion", "sample_id": [ "GSM63873", "GSM63874" ], "type": "genotype/variation", "id": "GDS1981_7" }, { "dataset_id": "GDS1981", "description": "ira1 RA mutant", "sample_id": [ "GSM63875", "GSM63876" ], "type": "genotype/variation", "id": "GDS1981_8" }, { "dataset_id": "GDS1981", "description": "ira2 deletion", "sample_id": [ "GSM63877", "GSM63878" ], "type": "genotype/variation", "id": "GDS1981_9" }, { "dataset_id": "GDS1981", "description": "ras2a22 dominant negative mutant", "sample_id": [ "GSM63881", "GSM63882" ], "type": "genotype/variation", "id": "GDS1981_10" }, { "dataset_id": "GDS1981", "description": "ras2v19 dominant active mutant", "sample_id": [ "GSM63879", "GSM63880" ], "type": "genotype/variation", "id": "GDS1981_11" }, { "dataset_id": "GDS1981", "description": "0 mM cAMP", "sample_id": [ "GSM63866", "GSM63867" ], "type": "agent", "id": "GDS1981_12" }, { "dataset_id": "GDS1981", "description": "0.5 mM cAMP", "sample_id": [ "GSM63868" ], "type": "agent", "id": "GDS1981_13" }, { "dataset_id": "GDS1981", "description": "1 mM cAMP", "sample_id": [ "GSM63870" ], "type": "agent", "id": "GDS1981_14" }, { "dataset_id": "GDS1981", "description": "2 mM cAMP", "sample_id": [ "GSM63871", "GSM63872" ], "type": "agent", "id": "GDS1981_15" }, { "dataset_id": "GDS1981", "description": "N/A", "sample_id": [ "GSM63861", "GSM63862", "GSM63864", "GSM63865", "GSM63873", "GSM63874", "GSM63875", "GSM63876", "GSM63877", "GSM63878", "GSM63879", "GSM63880", "GSM63881", "GSM63882" ], "type": "agent", "id": "GDS1981_16" } ], "taxid": "4932", "genes": 6143, "aggregation_function": "mean", "name": "GDS1981", "version": 1.0, "instances": "20", "variables": 6147, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1981.tab", "compression": "gz" } ], [ [ "GDS1982.tab" ], { "title": "Heat-stress-associated 32-kD protein Hsa32 null mutant response to heat shock", "description": "Analysis of heat-stress-associated 32-kD protein (Hsa32) knockout mutant seedlings subjected to heat shock at 37 degrees C for 2 hours. Results provide insight into the role of Hsa32 in acquired thermotolerance.", "type": "Expression profiling by array", "pubmed_id": "16500991", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4062", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1982", "description": "22 C", "sample_id": [ "GSM92823", "GSM92824", "GSM92827", "GSM92828" ], "type": "temperature", "id": "GDS1982_1" }, { "dataset_id": "GDS1982", "description": "37 C", "sample_id": [ "GSM92825", "GSM92826", "GSM92829", "GSM92830" ], "type": "temperature", "id": "GDS1982_2" }, { "dataset_id": "GDS1982", "description": "wild-type", "sample_id": [ "GSM92823", "GSM92824", "GSM92825", "GSM92826" ], "type": "genotype/variation", "id": "GDS1982_3" }, { "dataset_id": "GDS1982", "description": "Hsa32 KO", "sample_id": [ "GSM92827", "GSM92828", "GSM92829", "GSM92830" ], "type": "genotype/variation", "id": "GDS1982_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS1982", "version": 1.0, "instances": "8", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1982.tab", "compression": "gz" } ], [ [ "GDS1983.tab" ], { "title": "Primary visual cortex response to visual input deprivation (MG-U74A)", "description": "Analysis of primary visual cortex (V1) under conditions of binocular deprivation by dark-rearing (DR) or monocular deprivation (MD). Animals subjected to DR from birth till postnatal day (P) 27 or to MD from P11-12 to P27. Results provide insight into the role of visual activity in V1 development.", "type": "Expression profiling by array", "pubmed_id": "16633343", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4537", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1983", "description": "control", "sample_id": [ "GSM101701", "GSM101702", "GSM101703" ], "type": "protocol", "id": "GDS1983_1" }, { "dataset_id": "GDS1983", "description": "monocular deprivation", "sample_id": [ "GSM101690", "GSM101691", "GSM101692", "GSM101693", "GSM101694", "GSM101695" ], "type": "protocol", "id": "GDS1983_2" }, { "dataset_id": "GDS1983", "description": "dark rearing", "sample_id": [ "GSM101697", "GSM101698", "GSM101699" ], "type": "protocol", "id": "GDS1983_3" }, { "dataset_id": "GDS1983", "description": "right eyelid sutured", "sample_id": [ "GSM101693", "GSM101694", "GSM101695" ], "type": "other", "id": "GDS1983_4" }, { "dataset_id": "GDS1983", "description": "left eyelid sutured", "sample_id": [ "GSM101690", "GSM101691", "GSM101692" ], "type": "other", "id": "GDS1983_5" }, { "dataset_id": "GDS1983", "description": "not applicable", "sample_id": [ "GSM101701", "GSM101702", "GSM101703", "GSM101697", "GSM101698", "GSM101699" ], "type": "other", "id": "GDS1983_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1983", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1983.tab", "compression": "gz" } ], [ [ "GDS1984.tab" ], { "title": "Primary visual cortex response to visual input deprivation (MG-U74B)", "description": "Analysis of primary visual cortex (V1) under conditions of binocular deprivation by dark-rearing (DR) or monocular deprivation (MD). Animals subjected to DR from birth till postnatal day (P) 27 or to MD from P11-12 to P27. Results provide insight into the role of visual activity in V1 development.", "type": "Expression profiling by array", "pubmed_id": "16633343", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4537", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1984", "description": "control", "sample_id": [ "GSM101714", "GSM101715", "GSM101716" ], "type": "protocol", "id": "GDS1984_1" }, { "dataset_id": "GDS1984", "description": "monocular deprivation", "sample_id": [ "GSM101705", "GSM101706", "GSM101707", "GSM101708", "GSM101709", "GSM101710" ], "type": "protocol", "id": "GDS1984_2" }, { "dataset_id": "GDS1984", "description": "dark rearing", "sample_id": [ "GSM101711", "GSM101712", "GSM101713" ], "type": "protocol", "id": "GDS1984_3" }, { "dataset_id": "GDS1984", "description": "right eyelid sutured", "sample_id": [ "GSM101708", "GSM101709", "GSM101710" ], "type": "other", "id": "GDS1984_4" }, { "dataset_id": "GDS1984", "description": "left eyelid sutured", "sample_id": [ "GSM101705", "GSM101706", "GSM101707" ], "type": "other", "id": "GDS1984_5" }, { "dataset_id": "GDS1984", "description": "not applicable", "sample_id": [ "GSM101714", "GSM101715", "GSM101716", "GSM101711", "GSM101712", "GSM101713" ], "type": "other", "id": "GDS1984_6" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1984", "version": 1.0, "instances": "12", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1984.tab", "compression": "gz" } ], [ [ "GDS1985.tab" ], { "title": "Airway disease trait manifestation in various genetic backgrounds: lungs (MG-U74A)", "description": "Analysis of lungs of animals exhibiting extremes in airway hyperreactivity, goblet cell metaplasia, or both. Animals were derived from an intercross of an F1 hybrid strain, generated by crossing C57Bl/6J and Balb/cJ strains. Results provide insight into the pathogenesis of complex airway diseases.", "type": "Expression profiling by array", "pubmed_id": "16569774", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3925", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1985", "description": "low goblet cell metaplasia", "sample_id": [ "GSM89775", "GSM89776", "GSM89777", "GSM89780", "GSM89781", "GSM89784" ], "type": "disease state", "id": "GDS1985_1" }, { "dataset_id": "GDS1985", "description": "high goblet cell metaplasia", "sample_id": [ "GSM89774", "GSM89778", "GSM89779", "GSM89782", "GSM89783", "GSM89785" ], "type": "disease state", "id": "GDS1985_2" }, { "dataset_id": "GDS1985", "description": "low airway hyperreactivity", "sample_id": [ "GSM89774", "GSM89780", "GSM89781", "GSM89782", "GSM89783", "GSM89784" ], "type": "other", "id": "GDS1985_3" }, { "dataset_id": "GDS1985", "description": "high airway hyperreactivity", "sample_id": [ "GSM89775", "GSM89776", "GSM89777", "GSM89778", "GSM89779", "GSM89785" ], "type": "other", "id": "GDS1985_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS1985", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1985.tab", "compression": "gz" } ], [ [ "GDS1986.tab" ], { "title": "Primary visual cortex response to visual input deprivation (MG-U74C)", "description": "Analysis of primary visual cortex (V1) under conditions of binocular deprivation by dark-rearing (DR) or monocular deprivation (MD). Animals subjected to DR from birth till postnatal day (P) 27 or to MD from P11-12 to P27. Results provide insight into the role of visual activity in V1 development.", "type": "Expression profiling by array", "pubmed_id": "16633343", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4537", "order": "none", "update_date": "Jun 15 2006", "subsets": [ { "dataset_id": "GDS1986", "description": "control", "sample_id": [ "GSM101726", "GSM101727", "GSM101728" ], "type": "protocol", "id": "GDS1986_1" }, { "dataset_id": "GDS1986", "description": "monocular deprivation", "sample_id": [ "GSM101717", "GSM101718", "GSM101719", "GSM101720", "GSM101721", "GSM101722" ], "type": "protocol", "id": "GDS1986_2" }, { "dataset_id": "GDS1986", "description": "dark rearing", "sample_id": [ "GSM101723", "GSM101724", "GSM101725" ], "type": "protocol", "id": "GDS1986_3" }, { "dataset_id": "GDS1986", "description": "right eyelid sutured", "sample_id": [ "GSM101721", "GSM101722" ], "type": "other", "id": "GDS1986_4" }, { "dataset_id": "GDS1986", "description": "left eyelid sutured", "sample_id": [ "GSM101717", "GSM101718", "GSM101719", "GSM101720" ], "type": "other", "id": "GDS1986_5" }, { "dataset_id": "GDS1986", "description": "not applicable", "sample_id": [ "GSM101726", "GSM101727", "GSM101728", "GSM101723", "GSM101724", "GSM101725" ], "type": "other", "id": "GDS1986_6" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1986", "version": 1.0, "instances": "12", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1986.tab", "compression": "gz" } ], [ [ "GDS1987.tab" ], { "title": "Airway disease trait manifestation in various genetic backgrounds: lungs (MG-U74B)", "description": "Analysis of lungs of animals exhibiting extremes in airway hyperreactivity, goblet cell metaplasia, or both. Animals were derived from an intercross of an F1 hybrid strain, generated by crossing C57Bl/6J and Balb/cJ strains. Results provide insight into the pathogenesis of complex airway diseases.", "type": "Expression profiling by array", "pubmed_id": "16569774", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3925", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS1987", "description": "low globlet cell metaplasia", "sample_id": [ "GSM89787", "GSM89788", "GSM89789", "GSM89792", "GSM89793", "GSM89796" ], "type": "disease state", "id": "GDS1987_1" }, { "dataset_id": "GDS1987", "description": "high globlet cell metaplasia", "sample_id": [ "GSM89786", "GSM89790", "GSM89791", "GSM89794", "GSM89795", "GSM89797" ], "type": "disease state", "id": "GDS1987_2" }, { "dataset_id": "GDS1987", "description": "low airway hyperreactivity", "sample_id": [ "GSM89786", "GSM89792", "GSM89793", "GSM89794", "GSM89795", "GSM89796" ], "type": "other", "id": "GDS1987_3" }, { "dataset_id": "GDS1987", "description": "high airway hyperreactivity", "sample_id": [ "GSM89787", "GSM89788", "GSM89789", "GSM89790", "GSM89791", "GSM89797" ], "type": "other", "id": "GDS1987_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS1987", "version": 1.0, "instances": "12", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1987.tab", "compression": "gz" } ], [ [ "GDS1988.tab" ], { "title": "Airway disease trait manifestation in various genetic backgrounds: lungs (MG-U74C)", "description": "Analysis of lungs of animals exhibiting extremes in airway hyperreactivity, goblet cell metaplasia, or both. Animals were derived from an intercross of an F1 hybrid strain, generated by crossing C57Bl/6J and Balb/cJ strains. Results provide insight into the pathogenesis of complex airway diseases.", "type": "Expression profiling by array", "pubmed_id": "16569774", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3925", "order": "none", "update_date": "Aug 21 2006", "subsets": [ { "dataset_id": "GDS1988", "description": "low goblet cell metaplasia", "sample_id": [ "GSM89799", "GSM89800", "GSM89801", "GSM89804", "GSM89805", "GSM89808" ], "type": "disease state", "id": "GDS1988_1" }, { "dataset_id": "GDS1988", "description": "high globlet cell metaplasia", "sample_id": [ "GSM89798", "GSM89802", "GSM89803", "GSM89806", "GSM89807", "GSM89809" ], "type": "disease state", "id": "GDS1988_2" }, { "dataset_id": "GDS1988", "description": "low airway hyperreactivity", "sample_id": [ "GSM89798", "GSM89804", "GSM89805", "GSM89806", "GSM89807", "GSM89808" ], "type": "other", "id": "GDS1988_3" }, { "dataset_id": "GDS1988", "description": "high airway hyperreactivity", "sample_id": [ "GSM89799", "GSM89800", "GSM89801", "GSM89802", "GSM89803", "GSM89809" ], "type": "other", "id": "GDS1988_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS1988", "version": 1.0, "instances": "12", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1988.tab", "compression": "gz" } ], [ [ "GDS1989.tab" ], { "title": "Melanoma progression", "description": "Analysis of tissue specimens representing benign nevus, atypical nevus, melanoma in situ, vertical growth phase (VGP) melanoma, and metastatic growth phase (MGP) melanoma. Results identify expression signatures that distinguish benign and atypical nevi and melanomas in situ from VGPs and MGPs.", "type": "Expression profiling by array", "pubmed_id": "16251803", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4587", "order": "none", "update_date": "Jun 20 2006", "subsets": [ { "dataset_id": "GDS1989", "description": "epidermal melanocyte culture", "sample_id": [ "GSM102701" ], "type": "specimen", "id": "GDS1989_1" }, { "dataset_id": "GDS1989", "description": "epidermal keratinocyte culture", "sample_id": [ "GSM102702" ], "type": "specimen", "id": "GDS1989_2" }, { "dataset_id": "GDS1989", "description": "metastatic melanoma cell culture", "sample_id": [ "GSM102700" ], "type": "specimen", "id": "GDS1989_3" }, { "dataset_id": "GDS1989", "description": "biopsy", "sample_id": [ "GSM102682", "GSM102683", "GSM102684", "GSM102685", "GSM102686", "GSM102687", "GSM102688", "GSM102689", "GSM102691", "GSM102692", "GSM102695", "GSM102696", "GSM102697", "GSM102698", "GSM102699" ], "type": "specimen", "id": "GDS1989_4" }, { "dataset_id": "GDS1989", "description": "normal", "sample_id": [ "GSM102682", "GSM102683", "GSM102701", "GSM102702" ], "type": "disease state", "id": "GDS1989_5" }, { "dataset_id": "GDS1989", "description": "benign nevus", "sample_id": [ "GSM102684", "GSM102685" ], "type": "disease state", "id": "GDS1989_6" }, { "dataset_id": "GDS1989", "description": "atypical nevus", "sample_id": [ "GSM102686", "GSM102687" ], "type": "disease state", "id": "GDS1989_7" }, { "dataset_id": "GDS1989", "description": "melanoma in situ", "sample_id": [ "GSM102688", "GSM102689" ], "type": "disease state", "id": "GDS1989_8" }, { "dataset_id": "GDS1989", "description": "vertical growth phase melanoma", "sample_id": [ "GSM102691", "GSM102692" ], "type": "disease state", "id": "GDS1989_9" }, { "dataset_id": "GDS1989", "description": "metastatic growth phase melanoma", "sample_id": [ "GSM102695", "GSM102696", "GSM102700" ], "type": "disease state", "id": "GDS1989_10" }, { "dataset_id": "GDS1989", "description": "lymph node metastasis", "sample_id": [ "GSM102697", "GSM102698", "GSM102699" ], "type": "disease state", "id": "GDS1989_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS1989", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1989.tab", "compression": "gz" } ], [ [ "GDS199.tab" ], { "title": "Mefloquine treatment of NG108 neuroblastoma cells", "description": "Neuroblastoma cells NG108 exposed to a physiological dose (4400 ng/ml) of antimalarial mefloquine (Lariam), or 0.25% DMSO (control), for 2 hours. Mefloquine appears to disrupt neuronal function through disrupted calcium homeostasis and ER stress.", "type": "Expression profiling by array", "pubmed_id": "12675948", "platform": "GPL89", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1031", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE39", "order": "none", "update_date": "Apr 09 2003", "subsets": [ { "dataset_id": "GDS199", "description": "DMSO control", "sample_id": [ "GSM1654", "GSM1655", "GSM1656", "GSM1657", "GSM1658", "GSM1659", "GSM1660", "GSM1661" ], "type": "agent", "id": "GDS199_1" }, { "dataset_id": "GDS199", "description": "mefloquine", "sample_id": [ "GSM1662", "GSM1663", "GSM1664", "GSM1665", "GSM1666", "GSM1667", "GSM1668", "GSM1669" ], "type": "agent", "id": "GDS199_2" } ], "taxid": "10116", "genes": 652, "aggregation_function": "mean", "name": "GDS199", "version": 1.0, "instances": "16", "variables": 654, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS199.tab", "compression": "gz" } ], [ [ "GDS1990.tab" ], { "title": "Mdr2 knockout model of hepatocellular carcinoma at precancerous stages", "description": "Analysis of livers of 3 and 12-month-old Mdr2 knockout (Mdr2-KO) mutants. Mdr2-KO mutants lack the liver P-glycoprotein responsible for phosphatidylcholine transport across the canalicular membrane, and develop hepatocellular carcinoma between the ages of 12 and 15 months.", "type": "Expression profiling by array", "pubmed_id": "16618719", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4612", "order": "none", "update_date": "Jan 22 2007", "subsets": [ { "dataset_id": "GDS1990", "description": "Mdr2 heterozygotes", "sample_id": [ "GSM102084", "GSM102085", "GSM102086", "GSM102087", "GSM102088", "GSM102089" ], "type": "genotype/variation", "id": "GDS1990_1" }, { "dataset_id": "GDS1990", "description": "Mdr2-KO", "sample_id": [ "GSM102090", "GSM102091", "GSM102092", "GSM102093", "GSM102094", "GSM102095" ], "type": "genotype/variation", "id": "GDS1990_2" }, { "dataset_id": "GDS1990", "description": "3 m", "sample_id": [ "GSM102087", "GSM102088", "GSM102089", "GSM102093", "GSM102094", "GSM102095" ], "type": "age", "id": "GDS1990_3" }, { "dataset_id": "GDS1990", "description": "12 m", "sample_id": [ "GSM102084", "GSM102085", "GSM102086", "GSM102090", "GSM102091", "GSM102092" ], "type": "age", "id": "GDS1990_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS1990", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1990.tab", "compression": "gz" } ], [ [ "GDS1993.tab" ], { "title": "Colon carcinoma cell line differentiation: transporter and ion channel expression profile", "description": "Analysis of colon carcinoma Caco-2 cells cultured for various lengths of time up to 3 weeks in flasks or on filters. An array focusing on transporters and ion channels was used. Results provide insight into the influence of cell differentiation on the mRNA expression of transporters and channels.", "type": "Expression profiling by array", "pubmed_id": "15760106", "platform": "GPL1213", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "3024", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "32", "value_type": "log2 ratio", "reference_series": "GSE1368", "order": "none", "update_date": "Mar 07 2007", "subsets": [ { "dataset_id": "GDS1993", "description": "flask", "sample_id": [ "GSM22075", "GSM22076", "GSM22077", "GSM22078", "GSM22079", "GSM22080", "GSM22081", "GSM22082", "GSM22083", "GSM22084", "GSM22085", "GSM22086" ], "type": "protocol", "id": "GDS1993_1" }, { "dataset_id": "GDS1993", "description": "filter", "sample_id": [ "GSM22087", "GSM22088", "GSM22089", "GSM22090", "GSM22091", "GSM22092", "GSM22103", "GSM22104", "GSM22105", "GSM22106", "GSM22107", "GSM22108", "GSM22109", "GSM22110", "GSM22111", "GSM22112", "GSM22113", "GSM22114", "GSM22115", "GSM22116" ], "type": "protocol", "id": "GDS1993_2" }, { "dataset_id": "GDS1993", "description": "5 d", "sample_id": [ "GSM22075", "GSM22076", "GSM22077", "GSM22087", "GSM22088", "GSM22089", "GSM22109", "GSM22110" ], "type": "time", "id": "GDS1993_3" }, { "dataset_id": "GDS1993", "description": "1 wk", "sample_id": [ "GSM22078", "GSM22079", "GSM22080", "GSM22090", "GSM22091", "GSM22092", "GSM22111", "GSM22112" ], "type": "time", "id": "GDS1993_4" }, { "dataset_id": "GDS1993", "description": "2 wk", "sample_id": [ "GSM22081", "GSM22082", "GSM22083", "GSM22103", "GSM22104", "GSM22105", "GSM22113", "GSM22114" ], "type": "time", "id": "GDS1993_5" }, { "dataset_id": "GDS1993", "description": "3 wk", "sample_id": [ "GSM22084", "GSM22085", "GSM22086", "GSM22106", "GSM22107", "GSM22108", "GSM22115", "GSM22116" ], "type": "time", "id": "GDS1993_6" } ], "taxid": "9606", "genes": 1425, "aggregation_function": "mean", "name": "GDS1993", "version": 1.0, "instances": "32", "variables": 1428, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1993.tab", "compression": "gz" } ], [ [ "GDS1995.tab" ], { "title": "Age effect on healing femoral fractures: time course", "description": "Analysis of healing femurs of 6, 26, and 52-week-old Sprague-Dawley females at various time points up to 6 weeks after fracture. 6, 26, and 52-week-old animals regain normal skeletal biomechanics 4 weeks, 10 weeks, and 6 months after fracture, respectively.", "type": "Expression profiling by array", "pubmed_id": [ "15291962", "16894589", "17205564", "17260206" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1371", "order": "none", "update_date": "Mar 07 2007", "subsets": [ { "dataset_id": "GDS1995", "description": "6 weeks", "sample_id": [ "GSM22165", "GSM22166", "GSM22263", "GSM22264", "GSM22265", "GSM22266" ], "type": "age", "id": "GDS1995_1" }, { "dataset_id": "GDS1995", "description": "26 weeks", "sample_id": [ "GSM22267", "GSM22268", "GSM22269", "GSM22270", "GSM22271", "GSM22272" ], "type": "age", "id": "GDS1995_2" }, { "dataset_id": "GDS1995", "description": "52 weeks", "sample_id": [ "GSM22273", "GSM22274", "GSM22276", "GSM22277", "GSM22279", "GSM22280" ], "type": "age", "id": "GDS1995_3" }, { "dataset_id": "GDS1995", "description": "no fracture", "sample_id": [ "GSM22165", "GSM22267", "GSM22273" ], "type": "protocol", "id": "GDS1995_4" }, { "dataset_id": "GDS1995", "description": "fracture", "sample_id": [ "GSM22166", "GSM22263", "GSM22264", "GSM22265", "GSM22266", "GSM22268", "GSM22269", "GSM22270", "GSM22271", "GSM22272", "GSM22274", "GSM22276", "GSM22277", "GSM22279", "GSM22280" ], "type": "protocol", "id": "GDS1995_5" }, { "dataset_id": "GDS1995", "description": "control", "sample_id": [ "GSM22165", "GSM22267", "GSM22273" ], "type": "time", "id": "GDS1995_6" }, { "dataset_id": "GDS1995", "description": "3 d", "sample_id": [ "GSM22166", "GSM22268", "GSM22274" ], "type": "time", "id": "GDS1995_7" }, { "dataset_id": "GDS1995", "description": "1 wk", "sample_id": [ "GSM22263", "GSM22269", "GSM22276" ], "type": "time", "id": "GDS1995_8" }, { "dataset_id": "GDS1995", "description": "2 wk", "sample_id": [ "GSM22264", "GSM22270", "GSM22277" ], "type": "time", "id": "GDS1995_9" }, { "dataset_id": "GDS1995", "description": "4 wk", "sample_id": [ "GSM22265", "GSM22271", "GSM22279" ], "type": "time", "id": "GDS1995_10" }, { "dataset_id": "GDS1995", "description": "6 wk", "sample_id": [ "GSM22266", "GSM22272", "GSM22280" ], "type": "time", "id": "GDS1995_11" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS1995", "version": 1.0, "instances": "18", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS1995.tab", "compression": "gz" } ], [ [ "GDS20.tab" ], { "title": "Hyper-osmotic shock time course", "description": "Samples grown in YPD supplemented with 1 M sorbitol and collected at several time points up to 60 minutes. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL52", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Dec 17 2012", "subsets": [ { "dataset_id": "GDS20", "description": "5 minute", "sample_id": [ "GSM972" ], "type": "time", "id": "GDS20_1" }, { "dataset_id": "GDS20", "description": "15 minute", "sample_id": [ "GSM1039" ], "type": "time", "id": "GDS20_2" }, { "dataset_id": "GDS20", "description": "30 minute", "sample_id": [ "GSM1040" ], "type": "time", "id": "GDS20_3" }, { "dataset_id": "GDS20", "description": "45 minute", "sample_id": [ "GSM1037" ], "type": "time", "id": "GDS20_4" }, { "dataset_id": "GDS20", "description": "60 minute", "sample_id": [ "GSM938" ], "type": "time", "id": "GDS20_5" }, { "dataset_id": "GDS20", "description": "90 minute", "sample_id": [ "GSM939" ], "type": "time", "id": "GDS20_6" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS20", "version": 1.0, "instances": "6", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS20.tab", "compression": "gz" } ], [ [ "GDS200.tab" ], { "title": "Contextual fear conditioning paradigm", "description": "Mice subject to novel spatial context with 0.5 mA shock, shock alone or control. Alzheimer's mice (50% C57BL/6, 50% SJL) and MK-801-injected mice also examined. Dentate gyrus and CA1 hippocampus tissue examined 1, 2, 4 or 6 hours after treatment.", "type": "Expression profiling by array", "pubmed_id": "15102909", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "count", "reference_series": "GSE1782", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS200", "description": "shock only", "sample_id": [ "GSM4549", "GSM4550", "GSM4551", "GSM4553", "GSM4554", "GSM4555", "GSM4556", "GSM4557", "GSM4565", "GSM4567" ], "type": "protocol", "id": "GDS200_1" }, { "dataset_id": "GDS200", "description": "context and shock", "sample_id": [ "GSM4519", "GSM4521", "GSM4522", "GSM4523", "GSM4525", "GSM4526", "GSM4527", "GSM4528", "GSM4529", "GSM4531", "GSM4532", "GSM4533", "GSM4535", "GSM4536", "GSM4537", "GSM4538", "GSM4539", "GSM4540", "GSM4542", "GSM4543", "GSM4544", "GSM4545", "GSM4546", "GSM4548", "GSM4560", "GSM4562" ], "type": "protocol", "id": "GDS200_2" }, { "dataset_id": "GDS200", "description": "control", "sample_id": [ "GSM4493", "GSM4494", "GSM4495", "GSM4496", "GSM4497", "GSM4498", "GSM4499", "GSM4500", "GSM4501", "GSM4502", "GSM4503", "GSM4504", "GSM4505", "GSM4506", "GSM4507", "GSM4509", "GSM4510", "GSM4511", "GSM4512", "GSM4513", "GSM4514", "GSM4516", "GSM4517", "GSM4518", "GSM4558", "GSM4561", "GSM4563", "GSM4566" ], "type": "protocol", "id": "GDS200_3" }, { "dataset_id": "GDS200", "description": "CA1 hippocampus", "sample_id": [ "GSM4493", "GSM4494", "GSM4495", "GSM4496", "GSM4497", "GSM4498", "GSM4499", "GSM4500", "GSM4501", "GSM4502", "GSM4503", "GSM4504", "GSM4519", "GSM4521", "GSM4522", "GSM4523", "GSM4525", "GSM4526", "GSM4527", "GSM4528", "GSM4529", "GSM4531", "GSM4532", "GSM4533", "GSM4549", "GSM4550", "GSM4551", "GSM4553", "GSM4558", "GSM4560", "GSM4563", "GSM4565" ], "type": "tissue", "id": "GDS200_4" }, { "dataset_id": "GDS200", "description": "dentate gyrus hippocampus", "sample_id": [ "GSM4566", "GSM4567", "GSM4505", "GSM4506", "GSM4507", "GSM4509", "GSM4510", "GSM4511", "GSM4512", "GSM4513", "GSM4514", "GSM4516", "GSM4517", "GSM4518", "GSM4535", "GSM4536", "GSM4537", "GSM4538", "GSM4539", "GSM4540", "GSM4542", "GSM4543", "GSM4544", "GSM4545", "GSM4546", "GSM4548", "GSM4554", "GSM4555", "GSM4556", "GSM4557", "GSM4561", "GSM4562" ], "type": "tissue", "id": "GDS200_5" }, { "dataset_id": "GDS200", "description": "1 hour", "sample_id": [ "GSM4519", "GSM4525", "GSM4529", "GSM4535", "GSM4539", "GSM4544", "GSM4493", "GSM4497", "GSM4501", "GSM4505", "GSM4510", "GSM4514", "GSM4549", "GSM4554" ], "type": "time", "id": "GDS200_6" }, { "dataset_id": "GDS200", "description": "2 hour", "sample_id": [ "GSM4521", "GSM4526", "GSM4531", "GSM4536", "GSM4540", "GSM4545", "GSM4494", "GSM4498", "GSM4502", "GSM4506", "GSM4511", "GSM4516", "GSM4550", "GSM4555", "GSM4558", "GSM4560", "GSM4561", "GSM4562", "GSM4563", "GSM4565", "GSM4566", "GSM4567" ], "type": "time", "id": "GDS200_7" }, { "dataset_id": "GDS200", "description": "4 hour", "sample_id": [ "GSM4522", "GSM4527", "GSM4532", "GSM4537", "GSM4542", "GSM4546", "GSM4495", "GSM4499", "GSM4503", "GSM4507", "GSM4512", "GSM4517", "GSM4551", "GSM4556" ], "type": "time", "id": "GDS200_8" }, { "dataset_id": "GDS200", "description": "6 hour", "sample_id": [ "GSM4496", "GSM4500", "GSM4504", "GSM4509", "GSM4513", "GSM4518", "GSM4523", "GSM4528", "GSM4533", "GSM4538", "GSM4543", "GSM4548", "GSM4553", "GSM4557" ], "type": "time", "id": "GDS200_9" }, { "dataset_id": "GDS200", "description": "C57BL/6J", "sample_id": [ "GSM4519", "GSM4521", "GSM4522", "GSM4523", "GSM4525", "GSM4526", "GSM4527", "GSM4528", "GSM4529", "GSM4531", "GSM4532", "GSM4533", "GSM4535", "GSM4536", "GSM4537", "GSM4538", "GSM4539", "GSM4540", "GSM4542", "GSM4543", "GSM4544", "GSM4545", "GSM4546", "GSM4548", "GSM4493", "GSM4494", "GSM4495", "GSM4496", "GSM4497", "GSM4498", "GSM4499", "GSM4500", "GSM4501", "GSM4502", "GSM4503", "GSM4504", "GSM4505", "GSM4506", "GSM4507", "GSM4509", "GSM4510", "GSM4511", "GSM4512", "GSM4513", "GSM4514", "GSM4516", "GSM4517", "GSM4518", "GSM4549", "GSM4550", "GSM4551", "GSM4553", "GSM4554", "GSM4555", "GSM4556", "GSM4557" ], "type": "strain", "id": "GDS200_10" }, { "dataset_id": "GDS200", "description": "50% C57BL/6, 50% SJL Alzheimers", "sample_id": [ "GSM4558", "GSM4561", "GSM4560", "GSM4562" ], "type": "strain", "id": "GDS200_11" }, { "dataset_id": "GDS200", "description": "MK-801-injected C57BL/6J", "sample_id": [ "GSM4563", "GSM4566", "GSM4565", "GSM4567" ], "type": "strain", "id": "GDS200_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS200", "version": 1.0, "instances": "64", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS200.tab", "compression": "gz" } ], [ [ "GDS2001.tab" ], { "title": "Utrophin/dystrophin-deficient double mutant and dystrophin-deficient mdx mutant skeletal muscles", "description": "Comparison of skeletal muscles of utrophin/dystrophin double knockout (dko) mutants and dystrophin-deficient mdx mutants. dko and mdx mutants display skeletal muscle weakness and degeneration but only dko mutants display clinical features similar to Duchenne muscular dystrophy patients.", "type": "Expression profiling by array", "pubmed_id": "16525850", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1463", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2001", "description": "mdx", "sample_id": [ "GSM24681", "GSM24683", "GSM24685", "GSM24687", "GSM24688", "GSM24689", "GSM24693", "GSM24694", "GSM24695" ], "type": "genotype/variation", "id": "GDS2001_1" }, { "dataset_id": "GDS2001", "description": "dko", "sample_id": [ "GSM24682", "GSM24684", "GSM24686", "GSM24690", "GSM24691", "GSM24692", "GSM24696", "GSM24697", "GSM24698" ], "type": "genotype/variation", "id": "GDS2001_2" }, { "dataset_id": "GDS2001", "description": "extraocular", "sample_id": [ "GSM24681", "GSM24682", "GSM24689", "GSM24692", "GSM24695", "GSM24698" ], "type": "tissue", "id": "GDS2001_3" }, { "dataset_id": "GDS2001", "description": "heart", "sample_id": [ "GSM24683", "GSM24684", "GSM24688", "GSM24691", "GSM24694", "GSM24697" ], "type": "tissue", "id": "GDS2001_4" }, { "dataset_id": "GDS2001", "description": "leg", "sample_id": [ "GSM24685", "GSM24686", "GSM24687", "GSM24690", "GSM24693", "GSM24696" ], "type": "tissue", "id": "GDS2001_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2001", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2001.tab", "compression": "gz" } ], [ [ "GDS2002.tab" ], { "title": "Metabolic state-dependent stress response to short-term anaerobiosis: time course", "description": "Analysis of catabolite-repressed (glucose) or derepressed (galactose) wildtype JM43 cells shifted from aerobiosis to anaerobiosis (2 generations). Results identify metabolic remodeling that occurs during acclimatization to short-term anaerobiosis in galactose but not in glucose.", "type": "Expression profiling by array", "pubmed_id": "15870279", "platform": "GPL1535", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted oligonucleotide", "feature_count": "5617", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "30", "value_type": "log2 ratio", "reference_series": "GSE1879", "order": "none", "update_date": "Aug 11 2006", "subsets": [ { "dataset_id": "GDS2002", "description": "galactose", "sample_id": [ "GSM41252", "GSM41253", "GSM41254", "GSM41255", "GSM41256", "GSM41257", "GSM41258", "GSM41259", "GSM41260", "GSM41264", "GSM41265", "GSM41266", "GSM41279", "GSM41280", "GSM41281" ], "type": "growth protocol", "id": "GDS2002_1" }, { "dataset_id": "GDS2002", "description": "glucose", "sample_id": [ "GSM41785", "GSM41786", "GSM41787", "GSM41788", "GSM41789", "GSM41790", "GSM41791", "GSM41792", "GSM41793", "GSM41797", "GSM41798", "GSM41799", "GSM41811", "GSM41812", "GSM41813" ], "type": "growth protocol", "id": "GDS2002_2" }, { "dataset_id": "GDS2002", "description": "aerobic", "sample_id": [ "GSM41252", "GSM41253", "GSM41254", "GSM41785", "GSM41786", "GSM41787" ], "type": "protocol", "id": "GDS2002_3" }, { "dataset_id": "GDS2002", "description": "anaerobic", "sample_id": [ "GSM41255", "GSM41256", "GSM41257", "GSM41788", "GSM41789", "GSM41790", "GSM41258", "GSM41259", "GSM41260", "GSM41791", "GSM41792", "GSM41793", "GSM41264", "GSM41265", "GSM41266", "GSM41797", "GSM41798", "GSM41799", "GSM41279", "GSM41280", "GSM41281", "GSM41811", "GSM41812", "GSM41813" ], "type": "protocol", "id": "GDS2002_4" }, { "dataset_id": "GDS2002", "description": "0 generation", "sample_id": [ "GSM41252", "GSM41253", "GSM41254", "GSM41785", "GSM41786", "GSM41787" ], "type": "time", "id": "GDS2002_5" }, { "dataset_id": "GDS2002", "description": "0.04 generation", "sample_id": [ "GSM41255", "GSM41256", "GSM41257", "GSM41788", "GSM41789", "GSM41790" ], "type": "time", "id": "GDS2002_6" }, { "dataset_id": "GDS2002", "description": "0.08 generation", "sample_id": [ "GSM41258", "GSM41259", "GSM41260", "GSM41791", "GSM41792", "GSM41793" ], "type": "time", "id": "GDS2002_7" }, { "dataset_id": "GDS2002", "description": "0.19 generation", "sample_id": [ "GSM41264", "GSM41265", "GSM41266", "GSM41797", "GSM41798", "GSM41799" ], "type": "time", "id": "GDS2002_8" }, { "dataset_id": "GDS2002", "description": "2 generations", "sample_id": [ "GSM41279", "GSM41280", "GSM41281", "GSM41811", "GSM41812", "GSM41813" ], "type": "time", "id": "GDS2002_9" } ], "taxid": "4932", "genes": 5612, "aggregation_function": "mean", "name": "GDS2002", "version": 1.0, "instances": "30", "variables": 5616, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2002.tab", "compression": "gz" } ], [ [ "GDS2003.tab" ], { "title": "Msn2/4 role in metabolic remodeling during short-term anaerobiosis: time course", "description": "Analysis of catabolite-derepressed (galactose) wildtype JM43 and isogenic msn2/4 mutant KKY8 cells shifted to short-term anaerobiosis (2 generations). Msn2 and 4 are key stress factors. Results suggest Msn2/4 involvement in metabolic remodeling during acclimatization to short-term anaerobiosis.", "type": "Expression profiling by array", "pubmed_id": "15870279", "platform": "GPL1535", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted oligonucleotide", "feature_count": "5617", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "30", "value_type": "log2 ratio", "reference_series": "GSE1879", "order": "none", "update_date": "Aug 11 2006", "subsets": [ { "dataset_id": "GDS2003", "description": "wildtype", "sample_id": [ "GSM41252", "GSM41253", "GSM41254", "GSM41255", "GSM41256", "GSM41257", "GSM41258", "GSM41259", "GSM41260", "GSM41264", "GSM41265", "GSM41266", "GSM41279", "GSM41280", "GSM41281" ], "type": "genotype/variation", "id": "GDS2003_1" }, { "dataset_id": "GDS2003", "description": "msn2/4 mutant", "sample_id": [ "GSM33504", "GSM33505", "GSM33506", "GSM33507", "GSM33508", "GSM33509", "GSM33510", "GSM33511", "GSM33512", "GSM33514", "GSM33516", "GSM33518", "GSM33520", "GSM33522", "GSM33523" ], "type": "genotype/variation", "id": "GDS2003_2" }, { "dataset_id": "GDS2003", "description": "aerobic", "sample_id": [ "GSM33504", "GSM33505", "GSM33506", "GSM41252", "GSM41253", "GSM41254" ], "type": "protocol", "id": "GDS2003_3" }, { "dataset_id": "GDS2003", "description": "anaerobic", "sample_id": [ "GSM33507", "GSM33508", "GSM33509", "GSM41255", "GSM41256", "GSM41257", "GSM33510", "GSM33511", "GSM33512", "GSM41258", "GSM41259", "GSM41260", "GSM33514", "GSM33516", "GSM33518", "GSM41264", "GSM41265", "GSM41266", "GSM33520", "GSM33522", "GSM33523", "GSM41279", "GSM41280", "GSM41281" ], "type": "protocol", "id": "GDS2003_4" }, { "dataset_id": "GDS2003", "description": "0 generation", "sample_id": [ "GSM33504", "GSM33505", "GSM33506", "GSM41252", "GSM41253", "GSM41254" ], "type": "time", "id": "GDS2003_5" }, { "dataset_id": "GDS2003", "description": "0.04 generation", "sample_id": [ "GSM33507", "GSM33508", "GSM33509", "GSM41255", "GSM41256", "GSM41257" ], "type": "time", "id": "GDS2003_6" }, { "dataset_id": "GDS2003", "description": "0.08 generation", "sample_id": [ "GSM33510", "GSM33511", "GSM33512", "GSM41258", "GSM41259", "GSM41260" ], "type": "time", "id": "GDS2003_7" }, { "dataset_id": "GDS2003", "description": "0.19 generation", "sample_id": [ "GSM33514", "GSM33516", "GSM33518", "GSM41264", "GSM41265", "GSM41266" ], "type": "time", "id": "GDS2003_8" }, { "dataset_id": "GDS2003", "description": "2 generations", "sample_id": [ "GSM33520", "GSM33522", "GSM33523", "GSM41279", "GSM41280", "GSM41281" ], "type": "time", "id": "GDS2003_9" } ], "taxid": "4932", "genes": 5612, "aggregation_function": "mean", "name": "GDS2003", "version": 1.0, "instances": "30", "variables": 5616, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2003.tab", "compression": "gz" } ], [ [ "GDS2004.tab" ], { "title": "Lymphotoxin-beta receptor signaling inhibition effect on lymph nodes: time course (MG-430A)", "description": "Analysis of lymph nodes from animals treated with soluble lymphotoxin-beta receptor (LTbetaR)-immunoglobulin fusion protein (LTbetaR-Ig) for up to 35 days. LTbetaR-Ig inhibits LTbetaR activation, important in the differentiation of lymphoid germinal centers and follicular dendritic cells.", "type": "Expression profiling by array", "pubmed_id": "15843551", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2124", "order": "none", "update_date": "May 12 2006", "subsets": [ { "dataset_id": "GDS2004", "description": "control", "sample_id": [ "GSM38309", "GSM38310", "GSM38311" ], "type": "agent", "id": "GDS2004_1" }, { "dataset_id": "GDS2004", "description": "LTbetaR-Ig", "sample_id": [ "GSM38312", "GSM38313", "GSM38314", "GSM38315", "GSM38316", "GSM38317", "GSM38318", "GSM38319", "GSM38320", "GSM38321", "GSM38322", "GSM38323", "GSM38324", "GSM38325", "GSM38326" ], "type": "agent", "id": "GDS2004_2" }, { "dataset_id": "GDS2004", "description": "0 d", "sample_id": [ "GSM38309", "GSM38310", "GSM38311" ], "type": "time", "id": "GDS2004_3" }, { "dataset_id": "GDS2004", "description": "1 d", "sample_id": [ "GSM38312", "GSM38313", "GSM38314" ], "type": "time", "id": "GDS2004_4" }, { "dataset_id": "GDS2004", "description": "2 d", "sample_id": [ "GSM38315", "GSM38316", "GSM38317" ], "type": "time", "id": "GDS2004_5" }, { "dataset_id": "GDS2004", "description": "3 d", "sample_id": [ "GSM38318", "GSM38319", "GSM38320" ], "type": "time", "id": "GDS2004_6" }, { "dataset_id": "GDS2004", "description": "27 d", "sample_id": [ "GSM38321", "GSM38322", "GSM38323" ], "type": "time", "id": "GDS2004_7" }, { "dataset_id": "GDS2004", "description": "35 d", "sample_id": [ "GSM38324", "GSM38325", "GSM38326" ], "type": "time", "id": "GDS2004_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2004", "version": 1.0, "instances": "18", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2004.tab", "compression": "gz" } ], [ [ "GDS2005.tab" ], { "title": "Lymphotoxin-beta receptor signaling inhibition effect on lymph nodes: time course (MG-430B)", "description": "Analysis of lymph nodes from animals treated with soluble lymphotoxin-beta receptor (LTbetaR)-immunoglobulin fusion protein (LTbetaR-Ig) for up to 35 days. LTbetaR-Ig inhibits LTbetaR activation, important in the differentiation of lymphoid germinal centers and follicular dendritic cells.", "type": "Expression profiling by array", "pubmed_id": "15843551", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2124", "order": "none", "update_date": "May 12 2006", "subsets": [ { "dataset_id": "GDS2005", "description": "control", "sample_id": [ "GSM38327", "GSM38328", "GSM38329" ], "type": "agent", "id": "GDS2005_1" }, { "dataset_id": "GDS2005", "description": "LTbetaR-Ig", "sample_id": [ "GSM38330", "GSM38331", "GSM38332", "GSM38333", "GSM38334", "GSM38335", "GSM38336", "GSM38337", "GSM38338", "GSM38339", "GSM38340", "GSM38341", "GSM38342", "GSM38343", "GSM38344" ], "type": "agent", "id": "GDS2005_2" }, { "dataset_id": "GDS2005", "description": "0 d", "sample_id": [ "GSM38327", "GSM38328", "GSM38329" ], "type": "time", "id": "GDS2005_3" }, { "dataset_id": "GDS2005", "description": "1 d", "sample_id": [ "GSM38330", "GSM38331", "GSM38332" ], "type": "time", "id": "GDS2005_4" }, { "dataset_id": "GDS2005", "description": "2 d", "sample_id": [ "GSM38333", "GSM38334", "GSM38335" ], "type": "time", "id": "GDS2005_5" }, { "dataset_id": "GDS2005", "description": "3 d", "sample_id": [ "GSM38336", "GSM38337", "GSM38338" ], "type": "time", "id": "GDS2005_6" }, { "dataset_id": "GDS2005", "description": "27 d", "sample_id": [ "GSM38339", "GSM38340", "GSM38341" ], "type": "time", "id": "GDS2005_7" }, { "dataset_id": "GDS2005", "description": "35 d", "sample_id": [ "GSM38342", "GSM38343", "GSM38344" ], "type": "time", "id": "GDS2005_8" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2005", "version": 1.0, "instances": "18", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2005.tab", "compression": "gz" } ], [ [ "GDS2006.tab" ], { "title": "Thioredoxin interacting protein mutant model of hepatocellular carcinoma", "description": "Analysis of hepatocellular carcinoma (HCC) tumors from thioredoxin interacting protein (Txnip) deficient mutants. Txnip deficiency leads to HCC in mice. Results provide insight into the role of Txnip in the pathogenesis of HCC.", "type": "Expression profiling by array", "pubmed_id": "16607285", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2127", "order": "none", "update_date": "May 12 2006", "subsets": [ { "dataset_id": "GDS2006", "description": "normal", "sample_id": [ "GSM37397", "GSM37398", "GSM37399" ], "type": "disease state", "id": "GDS2006_1" }, { "dataset_id": "GDS2006", "description": "non-tumor, adjacent to tumor", "sample_id": [ "GSM37391", "GSM37392", "GSM37393" ], "type": "disease state", "id": "GDS2006_2" }, { "dataset_id": "GDS2006", "description": "tumor", "sample_id": [ "GSM37388", "GSM37389", "GSM37390", "GSM37394", "GSM37395", "GSM37396", "GSM37400", "GSM37401", "GSM37402" ], "type": "disease state", "id": "GDS2006_3" }, { "dataset_id": "GDS2006", "description": "22 m", "sample_id": [ "GSM37388", "GSM37389", "GSM37390", "GSM37391", "GSM37392", "GSM37393" ], "type": "age", "id": "GDS2006_4" }, { "dataset_id": "GDS2006", "description": "24 m", "sample_id": [ "GSM37394", "GSM37395", "GSM37396", "GSM37397", "GSM37398", "GSM37399" ], "type": "age", "id": "GDS2006_5" }, { "dataset_id": "GDS2006", "description": "27 m", "sample_id": [ "GSM37400", "GSM37401", "GSM37402" ], "type": "age", "id": "GDS2006_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2006", "version": 1.0, "instances": "15", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2006.tab", "compression": "gz" } ], [ [ "GDS2007.tab" ], { "title": "Fibrosarcoma cell line response to various cytostatic drugs", "description": "Analysis of fibrosarcoma HT1080 cells following exposure to the cytostatic chemotherapeutic agents actinomycin D or vincristine for 24 hours, or doxorubicin for 6 and 24 hours. Results provide insight into the molecular mechanisms underlying the cell death in response to cytotoxic therapies.", "type": "Expression profiling by array", "pubmed_id": "16001973", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2238", "order": "none", "update_date": "Mar 07 2007", "subsets": [ { "dataset_id": "GDS2007", "description": "control", "sample_id": [ "GSM40961" ], "type": "agent", "id": "GDS2007_1" }, { "dataset_id": "GDS2007", "description": "actinomycin D", "sample_id": [ "GSM40967" ], "type": "agent", "id": "GDS2007_2" }, { "dataset_id": "GDS2007", "description": "doxorubicin", "sample_id": [ "GSM40962", "GSM40963" ], "type": "agent", "id": "GDS2007_3" }, { "dataset_id": "GDS2007", "description": "vincristine", "sample_id": [ "GSM40964" ], "type": "agent", "id": "GDS2007_4" }, { "dataset_id": "GDS2007", "description": "control", "sample_id": [ "GSM40961" ], "type": "time", "id": "GDS2007_5" }, { "dataset_id": "GDS2007", "description": "6 h", "sample_id": [ "GSM40962" ], "type": "time", "id": "GDS2007_6" }, { "dataset_id": "GDS2007", "description": "24 h", "sample_id": [ "GSM40963", "GSM40964", "GSM40967" ], "type": "time", "id": "GDS2007_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2007", "version": 1.0, "instances": "5", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2007.tab", "compression": "gz" } ], [ [ "GDS2008.tab" ], { "title": "Sustained EGR1 expression in endothelial cells: time course (HG-U133A)", "description": "Analysis of umbilical vein endothelial cells (HUVEC) at various time points up to 48 hours following transfection with a recombinant adenovirus expressing early growth response-1 (EGR1). EGR1 is implicated in cell growth, apoptosis, and differentiation. Results identify potential EGR1 target genes.", "type": "Expression profiling by array", "pubmed_id": "16818645", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2299", "order": "none", "update_date": "Mar 07 2007", "subsets": [ { "dataset_id": "GDS2008", "description": "no vector", "sample_id": [ "GSM42868" ], "type": "infection", "id": "GDS2008_1" }, { "dataset_id": "GDS2008", "description": "control vector", "sample_id": [ "GSM42865", "GSM42867", "GSM42870" ], "type": "infection", "id": "GDS2008_2" }, { "dataset_id": "GDS2008", "description": "EGR1 vector", "sample_id": [ "GSM42864", "GSM42866", "GSM42869" ], "type": "infection", "id": "GDS2008_3" }, { "dataset_id": "GDS2008", "description": "16 h", "sample_id": [ "GSM42864", "GSM42865" ], "type": "time", "id": "GDS2008_4" }, { "dataset_id": "GDS2008", "description": "24 h", "sample_id": [ "GSM42866", "GSM42867", "GSM42868" ], "type": "time", "id": "GDS2008_5" }, { "dataset_id": "GDS2008", "description": "48 h", "sample_id": [ "GSM42869", "GSM42870" ], "type": "time", "id": "GDS2008_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2008", "version": 1.0, "instances": "7", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2008.tab", "compression": "gz" } ], [ [ "GDS2009.tab" ], { "title": "Sustained EGR1 expression in endothelial cells: time course (HG-U133B)", "description": "Analysis of umbilical vein endothelial cells (HUVEC) at various time points up to 48 hours following transfection with a recombinant adenovirus expressing early growth response-1 (EGR1). EGR1 is implicated in cell growth, apoptosis, and differentiation. Results identify potential EGR1 target genes.", "type": "Expression profiling by array", "pubmed_id": "16818645", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2299", "order": "none", "update_date": "Mar 07 2007", "subsets": [ { "dataset_id": "GDS2009", "description": "no vector", "sample_id": [ "GSM42875" ], "type": "infection", "id": "GDS2009_1" }, { "dataset_id": "GDS2009", "description": "control vector", "sample_id": [ "GSM42872", "GSM42874", "GSM42877" ], "type": "infection", "id": "GDS2009_2" }, { "dataset_id": "GDS2009", "description": "EGR1 vector", "sample_id": [ "GSM42871", "GSM42873", "GSM42876" ], "type": "infection", "id": "GDS2009_3" }, { "dataset_id": "GDS2009", "description": "16 h", "sample_id": [ "GSM42871", "GSM42872" ], "type": "time", "id": "GDS2009_4" }, { "dataset_id": "GDS2009", "description": "24 h", "sample_id": [ "GSM42873", "GSM42874", "GSM42875" ], "type": "time", "id": "GDS2009_5" }, { "dataset_id": "GDS2009", "description": "48 h", "sample_id": [ "GSM42876", "GSM42877" ], "type": "time", "id": "GDS2009_6" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2009", "version": 1.0, "instances": "7", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2009.tab", "compression": "gz" } ], [ [ "GDS201.tab" ], { "title": "Interferon induction by small hairpin RNA", "description": "Embryonic lung fibroblasts (HLF) infected with control lentivirus, or lentivirus expressing MRG15 and MRGX small hairpin RNAs from the H1 polIII promoter. The MRG15 shRNA induces an interferon response that is unrelated to silencing of MRG15.", "type": "Expression profiling by array", "pubmed_id": "12796781", "platform": "GPL247", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10368", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE282", "order": "none", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS201", "description": "lentivirus expressing MRG15 and MRGX", "sample_id": [ "GSM3891" ], "type": "cell line", "id": "GDS201_1" }, { "dataset_id": "GDS201", "description": "control lentivirus", "sample_id": [ "GSM3892" ], "type": "cell line", "id": "GDS201_2" } ], "taxid": "9606", "genes": 8678, "aggregation_function": "mean", "name": "GDS201", "version": 1.0, "instances": "2", "variables": 8680, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS201.tab", "compression": "gz" } ], [ [ "GDS2010.tab" ], { "title": "Wilms' tumor 1-associating protein knockdown", "description": "Analysis of umbilical vein endothelial cells (HUVEC) following siRNA knockdown of Wilms' tumor 1-associating protein, WTAP. WTAP interacts with Wilms' tumor 1 (WT1). The Wilms' tumor suppressor gene WT1 is important in the development of the genitourinary system.", "type": "Expression profiling by array", "pubmed_id": "17088532", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2327", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2010", "description": "control", "sample_id": [ "GSM43070", "GSM43072" ], "type": "protocol", "id": "GDS2010_1" }, { "dataset_id": "GDS2010", "description": "WTAP knockdown", "sample_id": [ "GSM43071", "GSM43073" ], "type": "protocol", "id": "GDS2010_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2010", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2010.tab", "compression": "gz" } ], [ [ "GDS2011.tab" ], { "title": "Lupus-prone BWF1 males and females: spleen (MG-U74A)", "description": "Analysis of spleens from 4-month-old pre-lupus male and female BWF1 animals. The BWF1 strain is a model for systemic lupus erythematosus. BWF1 females are more prone to lupus than BWF1 males.", "type": "Expression profiling by array", "pubmed_id": "18046341", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2336", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2011", "description": "male", "sample_id": [ "GSM43258", "GSM43259", "GSM43260", "GSM43261" ], "type": "gender", "id": "GDS2011_1" }, { "dataset_id": "GDS2011", "description": "female", "sample_id": [ "GSM43254", "GSM43255", "GSM43256", "GSM43257" ], "type": "gender", "id": "GDS2011_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2011", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2011.tab", "compression": "gz" } ], [ [ "GDS2012.tab" ], { "title": "Lupus-prone BWF1 males and females: spleen (MG-U74B)", "description": "Analysis of spleens from 4-month-old pre-lupus male and female BWF1 animals. The BWF1 strain is a model for systemic lupus erythematosus. BWF1 females are more prone to lupus than BWF1 males.", "type": "Expression profiling by array", "pubmed_id": "18046341", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2336", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2012", "description": "male", "sample_id": [ "GSM43266", "GSM43267", "GSM43268", "GSM43269" ], "type": "gender", "id": "GDS2012_1" }, { "dataset_id": "GDS2012", "description": "female", "sample_id": [ "GSM43262", "GSM43263", "GSM43264", "GSM43265" ], "type": "gender", "id": "GDS2012_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2012", "version": 1.0, "instances": "8", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2012.tab", "compression": "gz" } ], [ [ "GDS2013.tab" ], { "title": "Lupus-prone BWF1 males and females: spleen (MG-U74C)", "description": "Analysis of spleens from 4-month-old pre-lupus male and female BWF1 animals. The BWF1 strain is a model for systemic lupus erythematosus. BWF1 females are more prone to lupus than BWF1 males.", "type": "Expression profiling by array", "pubmed_id": "18046341", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2336", "order": "none", "update_date": "May 16 2006", "subsets": [ { "dataset_id": "GDS2013", "description": "male", "sample_id": [ "GSM43274", "GSM43275", "GSM43276", "GSM43277" ], "type": "gender", "id": "GDS2013_1" }, { "dataset_id": "GDS2013", "description": "female", "sample_id": [ "GSM43270", "GSM43271", "GSM43272", "GSM43273" ], "type": "gender", "id": "GDS2013_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2013", "version": 1.0, "instances": "8", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2013.tab", "compression": "gz" } ], [ [ "GDS2014.tab" ], { "title": "Ulcerative colitis", "description": "Expression profiling of colonic mucosa from patients with ulcerative colitis, a chronic inflammatory bowel disease of the colon. Colonic mucosa from patients with irritable bowel syndrome used as controls. Biopsies obtained during colonoscopy from region with macroscopically normal appearing mucosa.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE2461", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2014", "description": "irritable bowel syndrome", "sample_id": [ "GSM46539", "GSM46541", "GSM46542", "GSM46543", "GSM46544" ], "type": "disease state", "id": "GDS2014_1" }, { "dataset_id": "GDS2014", "description": "ulcerative colitis", "sample_id": [ "GSM46540", "GSM46545", "GSM46546" ], "type": "disease state", "id": "GDS2014_2" }, { "dataset_id": "GDS2014", "description": "male", "sample_id": [ "GSM46539", "GSM46540", "GSM46545" ], "type": "gender", "id": "GDS2014_3" }, { "dataset_id": "GDS2014", "description": "female", "sample_id": [ "GSM46541", "GSM46542", "GSM46543", "GSM46544", "GSM46546" ], "type": "gender", "id": "GDS2014_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2014", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2014.tab", "compression": "gz" } ], [ [ "GDS2015.tab" ], { "title": "Autoimmune regulator AIRE knockout effect on thymic epithelial cells", "description": "Expression profiling of thymic epithelial cells from autoimmune regulator AIRE knockout mutants. Mutations in the AIRE gene cause autoimmune polyendocrinopathy-candidiasis-ectodermal dystrophy, a rare autosomal recessive disease in humans.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2515", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2015", "description": "control", "sample_id": [ "GSM47956", "GSM48039", "GSM48042" ], "type": "genotype/variation", "id": "GDS2015_1" }, { "dataset_id": "GDS2015", "description": "AIRE knockout", "sample_id": [ "GSM48038", "GSM48041", "GSM48044" ], "type": "genotype/variation", "id": "GDS2015_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2015", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2015.tab", "compression": "gz" } ], [ [ "GDS2016.tab" ], { "title": "Nodal, Mixer, and Sox17 inactivation effect on gastrula stage embryo", "description": "Analysis of stage 11 embryos inactivated for Nodal signaling, or depleted of Mixer or Sox17 proteins. Microdissected animal caps and vegetal and equatorial regions of stage 11 embryos also examined. Nodal, Mixer, and Sox17 are key proteins of a pathway controlling endoderm formation.", "type": "Expression profiling by array", "pubmed_id": "16651540", "platform": "GPL1318", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15611", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE4448", "order": "none", "update_date": "Oct 31 2006", "subsets": [ { "dataset_id": "GDS2016", "description": "whole embryo", "sample_id": [ "GSM99979", "GSM99980", "GSM99981", "GSM99982", "GSM99983", "GSM99984", "GSM99985", "GSM99986", "GSM99987", "GSM99988", "GSM99989", "GSM99990", "GSM99991" ], "type": "tissue", "id": "GDS2016_1" }, { "dataset_id": "GDS2016", "description": "vegetal region", "sample_id": [ "GSM99970", "GSM99971" ], "type": "tissue", "id": "GDS2016_2" }, { "dataset_id": "GDS2016", "description": "equatorial region", "sample_id": [ "GSM99972", "GSM99973" ], "type": "tissue", "id": "GDS2016_3" }, { "dataset_id": "GDS2016", "description": "animal cap", "sample_id": [ "GSM99992", "GSM99993", "GSM99994" ], "type": "tissue", "id": "GDS2016_4" }, { "dataset_id": "GDS2016", "description": "unfertilized egg", "sample_id": [ "GSM99995", "GSM99996", "GSM99997" ], "type": "tissue", "id": "GDS2016_5" }, { "dataset_id": "GDS2016", "description": "Nodal- whole embryo", "sample_id": [ "GSM99967", "GSM99968", "GSM99969" ], "type": "tissue", "id": "GDS2016_6" }, { "dataset_id": "GDS2016", "description": "Mixer- whole embryo", "sample_id": [ "GSM99974", "GSM99975" ], "type": "tissue", "id": "GDS2016_7" }, { "dataset_id": "GDS2016", "description": "Sox17- whole embryo", "sample_id": [ "GSM99976", "GSM99977", "GSM99978" ], "type": "tissue", "id": "GDS2016_8" }, { "dataset_id": "GDS2016", "description": "stage 1", "sample_id": [ "GSM99995", "GSM99996", "GSM99997" ], "type": "development stage", "id": "GDS2016_9" }, { "dataset_id": "GDS2016", "description": "stage 11", "sample_id": [ "GSM99967", "GSM99968", "GSM99969", "GSM99970", "GSM99971", "GSM99972", "GSM99973", "GSM99974", "GSM99975", "GSM99976", "GSM99977", "GSM99978", "GSM99979", "GSM99980", "GSM99981", "GSM99982", "GSM99983", "GSM99984", "GSM99985", "GSM99986", "GSM99987", "GSM99992", "GSM99993", "GSM99994" ], "type": "development stage", "id": "GDS2016_10" }, { "dataset_id": "GDS2016", "description": "stage 18", "sample_id": [ "GSM99988", "GSM99989", "GSM99990", "GSM99991" ], "type": "development stage", "id": "GDS2016_11" } ], "taxid": "8355", "genes": 13132, "aggregation_function": "mean", "name": "GDS2016", "version": 1.0, "instances": "31", "variables": 13135, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2016.tab", "compression": "gz" } ], [ [ "GDS2018.tab" ], { "title": "Hypoxia-inducible factors-1 and -2 overexpression effect on embryonic kidney cells", "description": "Analysis of HEK293T embryonic kidney cells subjected to hypoxia or overexpressing hypoxia-inducible factor (HIF)-1, degradation resistant HIF-1, or HIF-2. Results provide insight into the respective roles of HIF-1 and HIF-2 in the cellular response to hypoxia.", "type": "Expression profiling by array", "pubmed_id": "15833863", "platform": "GPL1528", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22242", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log2 ratio", "reference_series": "GSE2020", "order": "none", "update_date": "Aug 24 2006", "subsets": [ { "dataset_id": "GDS2018", "description": "hypoxia", "sample_id": [ "GSM36482", "GSM36483" ], "type": "protocol", "id": "GDS2018_1" }, { "dataset_id": "GDS2018", "description": "HIF-1 alpha chain transfection", "sample_id": [ "GSM36484", "GSM36485", "GSM36486" ], "type": "protocol", "id": "GDS2018_2" }, { "dataset_id": "GDS2018", "description": "HIF-1_mutant alpha chain transfection", "sample_id": [ "GSM36487", "GSM36488" ], "type": "protocol", "id": "GDS2018_3" }, { "dataset_id": "GDS2018", "description": "HIF-2 alpha chain transfection", "sample_id": [ "GSM36489", "GSM36490", "GSM36491" ], "type": "protocol", "id": "GDS2018_4" } ], "taxid": "9606", "genes": 19272, "aggregation_function": "mean", "name": "GDS2018", "version": 1.0, "instances": "10", "variables": 19274, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2018.tab", "compression": "gz" } ], [ [ "GDS2019.tab" ], { "title": "Age effect on livers of long-lived Snell dwarf mutants", "description": "Analysis of livers from 6 and 22-month-old Snell dwarf mice which live 40% longer than wild types. Snell animals have a mutation in the Pit1 gene which prevents the development of anterior pituitary cells that produce growth hormone, thyroid stimulating hormone, and prolactin.", "type": "Expression profiling by array", "pubmed_id": "19943135", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE3129", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2019", "description": "wild type", "sample_id": [ "GSM69707", "GSM69708", "GSM69709", "GSM69713", "GSM69714", "GSM69715", "GSM69716" ], "type": "genotype/variation", "id": "GDS2019_1" }, { "dataset_id": "GDS2019", "description": "Snell", "sample_id": [ "GSM69710", "GSM69711", "GSM69712", "GSM69717", "GSM69718", "GSM69719", "GSM69720" ], "type": "genotype/variation", "id": "GDS2019_2" }, { "dataset_id": "GDS2019", "description": "6 m", "sample_id": [ "GSM69713", "GSM69714", "GSM69715", "GSM69716", "GSM69717", "GSM69718", "GSM69719", "GSM69720" ], "type": "age", "id": "GDS2019_3" }, { "dataset_id": "GDS2019", "description": "22 m", "sample_id": [ "GSM69707", "GSM69708", "GSM69709", "GSM69710", "GSM69711", "GSM69712" ], "type": "age", "id": "GDS2019_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2019", "version": 1.0, "instances": "14", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2019.tab", "compression": "gz" } ], [ [ "GDS2020.tab" ], { "title": "Midshaft fracture effect on the proximal femoral growth plate: time course", "description": "Analysis of proximal femoral growth plate at various time points up to 6 weeks following midshaft fracture in 4 week-old Sprague-Dawley females. Growth plates from fractured femora and intact contralateral femora compared. Midshaft femoral fracture stimulates linear growth of the bone.", "type": "Expression profiling by array", "pubmed_id": [ "16924177", "17398174" ], "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3298", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2020", "description": "no fracture", "sample_id": [ "GSM74213", "GSM74214" ], "type": "shock", "id": "GDS2020_1" }, { "dataset_id": "GDS2020", "description": "midshaft fracture", "sample_id": [ "GSM74216", "GSM74218", "GSM74220", "GSM74222", "GSM74224", "GSM74226", "GSM74228", "GSM74215", "GSM74217", "GSM74219", "GSM74221", "GSM74223", "GSM74225", "GSM74227" ], "type": "shock", "id": "GDS2020_2" }, { "dataset_id": "GDS2020", "description": "intact femora", "sample_id": [ "GSM74213", "GSM74214", "GSM74215", "GSM74217", "GSM74219", "GSM74221", "GSM74223", "GSM74225", "GSM74227" ], "type": "other", "id": "GDS2020_3" }, { "dataset_id": "GDS2020", "description": "fractured femora", "sample_id": [ "GSM74216", "GSM74218", "GSM74220", "GSM74222", "GSM74224", "GSM74226", "GSM74228" ], "type": "other", "id": "GDS2020_4" }, { "dataset_id": "GDS2020", "description": "control", "sample_id": [ "GSM74213", "GSM74214" ], "type": "time", "id": "GDS2020_5" }, { "dataset_id": "GDS2020", "description": "1 d", "sample_id": [ "GSM74215", "GSM74216" ], "type": "time", "id": "GDS2020_6" }, { "dataset_id": "GDS2020", "description": "3 d", "sample_id": [ "GSM74217", "GSM74218" ], "type": "time", "id": "GDS2020_7" }, { "dataset_id": "GDS2020", "description": "1 wk", "sample_id": [ "GSM74219", "GSM74220" ], "type": "time", "id": "GDS2020_8" }, { "dataset_id": "GDS2020", "description": "2 wk", "sample_id": [ "GSM74221", "GSM74222" ], "type": "time", "id": "GDS2020_9" }, { "dataset_id": "GDS2020", "description": "3 wk", "sample_id": [ "GSM74223", "GSM74224" ], "type": "time", "id": "GDS2020_10" }, { "dataset_id": "GDS2020", "description": "4 wk", "sample_id": [ "GSM74225", "GSM74226" ], "type": "time", "id": "GDS2020_11" }, { "dataset_id": "GDS2020", "description": "6 wk", "sample_id": [ "GSM74227", "GSM74228" ], "type": "time", "id": "GDS2020_12" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2020", "version": 1.0, "instances": "16", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2020.tab", "compression": "gz" } ], [ [ "GDS2021.tab" ], { "title": "Coronary smooth muscle cell response to beta-1 receptor blockers metoprolol and nebivolol", "description": "Expression profiling of coronary smooth muscle cells treated with metoprolol or nebivolol. Metoprolol and nebivolol are beta 1-receptor blockers. In a study of 155 patients with hypertension, adverse effects of metoprolol were higher than nebivolol (Uhlir et al. 1991).", "type": "Expression profiling by array", "pubmed_id": "17467819", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3356", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2021", "description": "control", "sample_id": [ "GSM75876", "GSM75877", "GSM75878" ], "type": "agent", "id": "GDS2021_1" }, { "dataset_id": "GDS2021", "description": "metoprolol", "sample_id": [ "GSM75879", "GSM75880", "GSM75881" ], "type": "agent", "id": "GDS2021_2" }, { "dataset_id": "GDS2021", "description": "nebivolol", "sample_id": [ "GSM75882", "GSM75883", "GSM75884" ], "type": "agent", "id": "GDS2021_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2021", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2021.tab", "compression": "gz" } ], [ [ "GDS2023.tab" ], { "title": "Bronchial epithelial cell response to respiratory syncytial virus infection: time course", "description": "Expression profiling of bronchial epithelial cells at 4 and 24 hours following treatment with respiratory syncytial virus (RSV) at 1.0 MOI. RSV is the most common cause of bronchiolitis and pneumonia among infants.", "type": "Expression profiling by array", "pubmed_id": "19459069", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3397", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2023", "description": "vehicle control", "sample_id": [ "GSM76392", "GSM76393", "GSM76394", "GSM76395" ], "type": "infection", "id": "GDS2023_1" }, { "dataset_id": "GDS2023", "description": "RSV", "sample_id": [ "GSM76396", "GSM76397", "GSM76398", "GSM76399", "GSM76400", "GSM76401", "GSM76402", "GSM76403" ], "type": "infection", "id": "GDS2023_2" }, { "dataset_id": "GDS2023", "description": "4 h", "sample_id": [ "GSM76392", "GSM76393", "GSM76394", "GSM76395", "GSM76396", "GSM76397", "GSM76398", "GSM76399" ], "type": "time", "id": "GDS2023_3" }, { "dataset_id": "GDS2023", "description": "24 h", "sample_id": [ "GSM76400", "GSM76401", "GSM76402", "GSM76403" ], "type": "time", "id": "GDS2023_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2023", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2023.tab", "compression": "gz" } ], [ [ "GDS2024.tab" ], { "title": "Lung immune response to Nippostrongylus brasiliensis infection: time course", "description": "Analysis of lungs of SCID animals at various time points up to 12 days post infection with Nippostrongylus brasiliensis. SCID animals have no functional B or T cells but a fully functional innate immune system. Results provide insight into the immune response to helminth infection in the lung.", "type": "Expression profiling by array", "pubmed_id": "16926388", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE3414", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2024", "description": "wild type", "sample_id": [ "GSM76963", "GSM76964", "GSM76965", "GSM76969", "GSM76970", "GSM76971", "GSM76975", "GSM76976", "GSM76977", "GSM76981", "GSM76982", "GSM76983", "GSM76987", "GSM76988", "GSM76989", "GSM76993", "GSM76994", "GSM76995" ], "type": "strain", "id": "GDS2024_1" }, { "dataset_id": "GDS2024", "description": "SCID", "sample_id": [ "GSM76966", "GSM76967", "GSM76968", "GSM76972", "GSM76973", "GSM76974", "GSM76978", "GSM76979", "GSM76980", "GSM76984", "GSM76985", "GSM76986", "GSM76990", "GSM76991", "GSM76992", "GSM76996", "GSM76997", "GSM76998" ], "type": "strain", "id": "GDS2024_2" }, { "dataset_id": "GDS2024", "description": "control", "sample_id": [ "GSM76963", "GSM76964", "GSM76965", "GSM76966", "GSM76967", "GSM76968" ], "type": "infection", "id": "GDS2024_3" }, { "dataset_id": "GDS2024", "description": "Nippostrongylus brasiliensis", "sample_id": [ "GSM76969", "GSM76970", "GSM76971", "GSM76972", "GSM76973", "GSM76974", "GSM76975", "GSM76976", "GSM76977", "GSM76978", "GSM76979", "GSM76980", "GSM76981", "GSM76982", "GSM76983", "GSM76984", "GSM76985", "GSM76986", "GSM76987", "GSM76988", "GSM76989", "GSM76990", "GSM76991", "GSM76992", "GSM76993", "GSM76994", "GSM76995", "GSM76996", "GSM76997", "GSM76998" ], "type": "infection", "id": "GDS2024_4" }, { "dataset_id": "GDS2024", "description": "control", "sample_id": [ "GSM76963", "GSM76964", "GSM76965", "GSM76966", "GSM76967", "GSM76968" ], "type": "time", "id": "GDS2024_5" }, { "dataset_id": "GDS2024", "description": "2 dpi", "sample_id": [ "GSM76969", "GSM76970", "GSM76971", "GSM76972", "GSM76973", "GSM76974" ], "type": "time", "id": "GDS2024_6" }, { "dataset_id": "GDS2024", "description": "3 dpi", "sample_id": [ "GSM76975", "GSM76976", "GSM76977", "GSM76978", "GSM76979", "GSM76980" ], "type": "time", "id": "GDS2024_7" }, { "dataset_id": "GDS2024", "description": "4 dpi", "sample_id": [ "GSM76981", "GSM76982", "GSM76983", "GSM76984", "GSM76985", "GSM76986" ], "type": "time", "id": "GDS2024_8" }, { "dataset_id": "GDS2024", "description": "8 dpi", "sample_id": [ "GSM76987", "GSM76988", "GSM76989", "GSM76990", "GSM76991", "GSM76992" ], "type": "time", "id": "GDS2024_9" }, { "dataset_id": "GDS2024", "description": "12 dpi", "sample_id": [ "GSM76993", "GSM76994", "GSM76995", "GSM76996", "GSM76997", "GSM76998" ], "type": "time", "id": "GDS2024_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2024", "version": 1.0, "instances": "36", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2024.tab", "compression": "gz" } ], [ [ "GDS2025.tab" ], { "title": "Myc activation and deactivation effect on pancreatic islet beta cells", "description": "Analysis of transgenic pancreatic islet beta cells after activation of Myc for up to 24 hours or activation for 21 days followed by deactivation for up to 6 days. Results provide insight into the molecular basis of Myc-driven tumorigenesis in vivo.", "type": "Expression profiling by array", "pubmed_id": "16651409", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE4356", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2025", "description": "early activation cohort", "sample_id": [ "GSM99043", "GSM99044", "GSM99045", "GSM99046", "GSM99047", "GSM99048", "GSM99049", "GSM99050", "GSM99051", "GSM99052", "GSM99053", "GSM99054", "GSM99055", "GSM99056", "GSM99057" ], "type": "other", "id": "GDS2025_1" }, { "dataset_id": "GDS2025", "description": "regression cohort", "sample_id": [ "GSM99058", "GSM99059", "GSM99060", "GSM99061", "GSM99062", "GSM99063", "GSM99064", "GSM99065", "GSM99066", "GSM99067", "GSM99068", "GSM99069" ], "type": "other", "id": "GDS2025_2" }, { "dataset_id": "GDS2025", "description": "control", "sample_id": [ "GSM99043", "GSM99044", "GSM99045" ], "type": "protocol", "id": "GDS2025_3" }, { "dataset_id": "GDS2025", "description": "2h activation", "sample_id": [ "GSM99046", "GSM99047", "GSM99048" ], "type": "protocol", "id": "GDS2025_4" }, { "dataset_id": "GDS2025", "description": "4h activation", "sample_id": [ "GSM99049", "GSM99050", "GSM99051" ], "type": "protocol", "id": "GDS2025_5" }, { "dataset_id": "GDS2025", "description": "8h activation", "sample_id": [ "GSM99052", "GSM99053", "GSM99054" ], "type": "protocol", "id": "GDS2025_6" }, { "dataset_id": "GDS2025", "description": "24h activation", "sample_id": [ "GSM99055", "GSM99056", "GSM99057" ], "type": "protocol", "id": "GDS2025_7" }, { "dataset_id": "GDS2025", "description": "21 d activation", "sample_id": [ "GSM99058", "GSM99059", "GSM99060" ], "type": "protocol", "id": "GDS2025_8" }, { "dataset_id": "GDS2025", "description": "21 d activation , 2 d deactivation", "sample_id": [ "GSM99061", "GSM99062", "GSM99063" ], "type": "protocol", "id": "GDS2025_9" }, { "dataset_id": "GDS2025", "description": "21 d activation , 4 d deactivation", "sample_id": [ "GSM99064", "GSM99065", "GSM99066" ], "type": "protocol", "id": "GDS2025_10" }, { "dataset_id": "GDS2025", "description": "21 d activation , 6 d deactivation", "sample_id": [ "GSM99067", "GSM99068", "GSM99069" ], "type": "protocol", "id": "GDS2025_11" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2025", "version": 1.0, "instances": "27", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2025.tab", "compression": "gz" } ], [ [ "GDS2026.tab" ], { "title": "TSLC1/IGSF4 deficiency effect on testis", "description": "Analysis of whole testes of TSLC1/IGSF4 deficient animals. The TSLC1/IGSF4 protein belongs to the immunoglobulin superfamily of cell adhesion molecules. Results provide insight into the role of TSLC1/IGSF4 in spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "16612000", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3676", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2026", "description": "wildtype", "sample_id": [ "GSM85211", "GSM85213" ], "type": "genotype/variation", "id": "GDS2026_1" }, { "dataset_id": "GDS2026", "description": "TSLC1/IGSF4 knockout", "sample_id": [ "GSM85212", "GSM85214" ], "type": "genotype/variation", "id": "GDS2026_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2026", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2026.tab", "compression": "gz" } ], [ [ "GDS2027.tab" ], { "title": "Nurr1 overexpression effect on neural stem cells", "description": "Expression profiling of neural stem cell lines overexpressing the orphan nuclear receptor Nurr1. Nurr1 is critical for the development of the ventral midbrain dopaminergic neurons, the cells primarily lost in Parkinson's disease.", "type": "Expression profiling by array", "pubmed_id": "17038671", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3571", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2027", "description": "parental control", "sample_id": [ "GSM82226", "GSM82227" ], "type": "genotype/variation", "id": "GDS2027_1" }, { "dataset_id": "GDS2027", "description": "Nurr1 overexpressing", "sample_id": [ "GSM82224", "GSM82225" ], "type": "genotype/variation", "id": "GDS2027_2" }, { "dataset_id": "GDS2027", "description": "matched pair 1", "sample_id": [ "GSM82224", "GSM82226" ], "type": "other", "id": "GDS2027_3" }, { "dataset_id": "GDS2027", "description": "matched pair 2", "sample_id": [ "GSM82225", "GSM82227" ], "type": "other", "id": "GDS2027_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2027", "version": 1.0, "instances": "4", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2027.tab", "compression": "gz" } ], [ [ "GDS2028.tab" ], { "title": "Thymocytes of the NOD background response to activation by a mimotope peptide", "description": "Analysis of NOD or B6g7 strain BDC2.5 transgenic fetal thymic organ culture thymocytes after addition of a mimotope peptide that activates mature BDC2.5 T cells to inititate apoptosis. Results provide insight into the differential sensitivity to clonal deletion of this clonotype in the 2 strains.", "type": "Expression profiling by array", "pubmed_id": "15780994", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE2128", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2028", "description": "B6g7", "sample_id": [ "GSM38500", "GSM38501", "GSM38502", "GSM38503", "GSM38504", "GSM38505", "GSM38506", "GSM38507" ], "type": "strain", "id": "GDS2028_1" }, { "dataset_id": "GDS2028", "description": "NOD", "sample_id": [ "GSM38508", "GSM38509", "GSM38510", "GSM38511", "GSM38512", "GSM38513", "GSM38514", "GSM38515" ], "type": "strain", "id": "GDS2028_2" }, { "dataset_id": "GDS2028", "description": "wild type", "sample_id": [ "GSM38506", "GSM38507", "GSM38514", "GSM38515" ], "type": "genotype/variation", "id": "GDS2028_3" }, { "dataset_id": "GDS2028", "description": "transgenic", "sample_id": [ "GSM38500", "GSM38501", "GSM38502", "GSM38503", "GSM38504", "GSM38505", "GSM38508", "GSM38509", "GSM38510", "GSM38511", "GSM38512", "GSM38513" ], "type": "genotype/variation", "id": "GDS2028_4" }, { "dataset_id": "GDS2028", "description": "untreated", "sample_id": [ "GSM38500", "GSM38501", "GSM38502", "GSM38506", "GSM38507", "GSM38508", "GSM38509", "GSM38510", "GSM38514", "GSM38515" ], "type": "agent", "id": "GDS2028_5" }, { "dataset_id": "GDS2028", "description": "mimotope", "sample_id": [ "GSM38503", "GSM38504", "GSM38505", "GSM38511", "GSM38512", "GSM38513" ], "type": "agent", "id": "GDS2028_6" }, { "dataset_id": "GDS2028", "description": "0 h", "sample_id": [ "GSM38500", "GSM38501", "GSM38502", "GSM38506", "GSM38507", "GSM38508", "GSM38509", "GSM38510", "GSM38514", "GSM38515" ], "type": "time", "id": "GDS2028_7" }, { "dataset_id": "GDS2028", "description": "16 h", "sample_id": [ "GSM38503", "GSM38504", "GSM38505", "GSM38511", "GSM38512", "GSM38513" ], "type": "time", "id": "GDS2028_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2028", "version": 1.0, "instances": "16", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2028.tab", "compression": "gz" } ], [ [ "GDS2029.tab" ], { "title": "Histone H2B N-terminal domain mutants", "description": "Analysis of histone H2B mutants that have a substitution of all acetylated N-terminal lysine (K) residues with glycine, or a deletion in the N-terminal domain. Results provide insight into the role of the histone NTD and histone lysine acetylation in transcriptional regulation.", "type": "Expression profiling by array", "pubmed_id": [ "16648479", "20007597" ], "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3806", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2029", "description": "wild type", "sample_id": [ "GSM86746", "GSM86747", "GSM86748", "GSM86752", "GSM86753", "GSM86758", "GSM86759", "GSM86764" ], "type": "genotype/variation", "id": "GDS2029_1" }, { "dataset_id": "GDS2029", "description": "K to G substitution", "sample_id": [ "GSM86755", "GSM86756", "GSM86757" ], "type": "genotype/variation", "id": "GDS2029_2" }, { "dataset_id": "GDS2029", "description": "3-32 deletion", "sample_id": [ "GSM86749", "GSM86750", "GSM86751" ], "type": "genotype/variation", "id": "GDS2029_3" }, { "dataset_id": "GDS2029", "description": "3-37 deletion", "sample_id": [ "GSM86761", "GSM86762", "GSM86763" ], "type": "genotype/variation", "id": "GDS2029_4" }, { "dataset_id": "GDS2029", "description": "30-37 deletion", "sample_id": [ "GSM86767", "GSM86768", "GSM86769" ], "type": "genotype/variation", "id": "GDS2029_5" }, { "dataset_id": "GDS2029", "description": "experimental set 1", "sample_id": [ "GSM86746", "GSM86747", "GSM86749", "GSM86750", "GSM86751" ], "type": "protocol", "id": "GDS2029_6" }, { "dataset_id": "GDS2029", "description": "experimental set 2", "sample_id": [ "GSM86752", "GSM86753", "GSM86755", "GSM86756", "GSM86757" ], "type": "protocol", "id": "GDS2029_7" }, { "dataset_id": "GDS2029", "description": "experimental set 3", "sample_id": [ "GSM86758", "GSM86761", "GSM86762", "GSM86763" ], "type": "protocol", "id": "GDS2029_8" }, { "dataset_id": "GDS2029", "description": "experimental set 4", "sample_id": [ "GSM86764", "GSM86767", "GSM86768", "GSM86769" ], "type": "protocol", "id": "GDS2029_9" }, { "dataset_id": "GDS2029", "description": "control for sets 1, 2, 3", "sample_id": [ "GSM86748" ], "type": "protocol", "id": "GDS2029_10" }, { "dataset_id": "GDS2029", "description": "control for sets 3, 4", "sample_id": [ "GSM86759" ], "type": "protocol", "id": "GDS2029_11" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2029", "version": 1.0, "instances": "20", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2029.tab", "compression": "gz" } ], [ [ "GDS2030.tab" ], { "title": "Hoxa11/Hoxd11 null mutation effect on embryonic kidney development (MG-430A)", "description": "Analysis of kidneys from Hoxa11/Hoxd11 double null mutants at various embryonic ages up to E16.5. Hox11 genes play critical roles in kidney development. Results provide insight into the molecular mechanisms of Hox11 function in kidney development.", "type": "Expression profiling by array", "pubmed_id": "16581055", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE3808", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2030", "description": "wild type", "sample_id": [ "GSM87379", "GSM87386", "GSM87387", "GSM87388", "GSM87389", "GSM87390", "GSM87391", "GSM87392" ], "type": "genotype/variation", "id": "GDS2030_1" }, { "dataset_id": "GDS2030", "description": "Hox11/Hoxd11 null", "sample_id": [ "GSM87380", "GSM87381", "GSM87382", "GSM87383", "GSM87384", "GSM87385" ], "type": "genotype/variation", "id": "GDS2030_2" }, { "dataset_id": "GDS2030", "description": "E12.5", "sample_id": [ "GSM87380", "GSM87381", "GSM87387", "GSM87388" ], "type": "age", "id": "GDS2030_3" }, { "dataset_id": "GDS2030", "description": "E13.5", "sample_id": [ "GSM87382", "GSM87383", "GSM87389", "GSM87390" ], "type": "age", "id": "GDS2030_4" }, { "dataset_id": "GDS2030", "description": "E16.5", "sample_id": [ "GSM87384", "GSM87385", "GSM87391", "GSM87392" ], "type": "age", "id": "GDS2030_5" }, { "dataset_id": "GDS2030", "description": "10 wk adult", "sample_id": [ "GSM87379", "GSM87386" ], "type": "age", "id": "GDS2030_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2030", "version": 1.0, "instances": "14", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2030.tab", "compression": "gz" } ], [ [ "GDS2031.tab" ], { "title": "Hoxa11/Hoxd11 null mutation effect on embryonic kidney development (MG-430B)", "description": "Analysis of kidneys from Hoxa11/Hoxd11 double null mutants at various embryonic ages up to E16.5. Hox11 genes play critical roles in kidney development. Results provide insight into the molecular mechanisms of Hox11 function in kidney development.", "type": "Expression profiling by array", "pubmed_id": "16581055", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE3808", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2031", "description": "wild type", "sample_id": [ "GSM87393", "GSM87400", "GSM87401", "GSM87402", "GSM87403", "GSM87404", "GSM87405", "GSM87406" ], "type": "genotype/variation", "id": "GDS2031_1" }, { "dataset_id": "GDS2031", "description": "Hox11/Hoxd11 null", "sample_id": [ "GSM87394", "GSM87395", "GSM87396", "GSM87397", "GSM87398", "GSM87399" ], "type": "genotype/variation", "id": "GDS2031_2" }, { "dataset_id": "GDS2031", "description": "E12.5", "sample_id": [ "GSM87394", "GSM87395", "GSM87401", "GSM87402" ], "type": "age", "id": "GDS2031_3" }, { "dataset_id": "GDS2031", "description": "E13.5", "sample_id": [ "GSM87396", "GSM87397", "GSM87403", "GSM87404" ], "type": "age", "id": "GDS2031_4" }, { "dataset_id": "GDS2031", "description": "E16.5", "sample_id": [ "GSM87398", "GSM87399", "GSM87405", "GSM87406" ], "type": "age", "id": "GDS2031_5" }, { "dataset_id": "GDS2031", "description": "10 wk adult", "sample_id": [ "GSM87393", "GSM87400" ], "type": "age", "id": "GDS2031_6" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2031", "version": 1.0, "instances": "14", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2031.tab", "compression": "gz" } ], [ [ "GDS2032.tab" ], { "title": "Hoxa11/Hoxd11 null mutation effect on the metanephric mesenchyme", "description": "Analysis of metanephric mesenchyme (MM) dissected from the rudimentary kidney of embryonic day E11.5 Hoxa11 Hoxd11 null mutants and wild types. Gene expression in wild type ureteric bud (UB) examined. Hox11 genes are expressed in the early MM and are required for the induction of UB formation.", "type": "Expression profiling by array", "pubmed_id": "16581055", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3822", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2032", "description": "wild type", "sample_id": [ "GSM87678", "GSM87679", "GSM87680", "GSM87681", "GSM87682", "GSM87683", "GSM87684", "GSM87685", "GSM87686", "GSM87687", "GSM87688" ], "type": "genotype/variation", "id": "GDS2032_1" }, { "dataset_id": "GDS2032", "description": "HoxA11 HoxD11 null", "sample_id": [ "GSM87677", "GSM87689", "GSM87690", "GSM87691", "GSM87692" ], "type": "genotype/variation", "id": "GDS2032_2" }, { "dataset_id": "GDS2032", "description": "metanephric mesenchyme", "sample_id": [ "GSM87677", "GSM87678", "GSM87681", "GSM87682", "GSM87683", "GSM87686", "GSM87687", "GSM87688", "GSM87689", "GSM87690", "GSM87691", "GSM87692" ], "type": "tissue", "id": "GDS2032_3" }, { "dataset_id": "GDS2032", "description": "ureteric bud", "sample_id": [ "GSM87679", "GSM87680", "GSM87684", "GSM87685" ], "type": "tissue", "id": "GDS2032_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2032", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2032.tab", "compression": "gz" } ], [ [ "GDS2034.tab" ], { "title": "Prostate cancer cell line LNCaP response to synthetic androgen R1881: time course", "description": "Expression profiling of prostate cancer cell line LNCaP treated for up to 8 hours with the synthetic androgen R1881. LNCaP cells grow slowly in medium devoid of steroids but resume growth upon the addition of androgens. The study aims to identify direct targets of the androgen receptor.", "type": "Expression profiling by array", "pubmed_id": "16707422", "platform": "GPL3349", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE4027", "order": "ordered", "update_date": "Mar 16 2007", "subsets": [ { "dataset_id": "GDS2034", "description": "2 h", "sample_id": [ "GSM91874", "GSM91875" ], "type": "time", "id": "GDS2034_1" }, { "dataset_id": "GDS2034", "description": "4 h", "sample_id": [ "GSM91879", "GSM92195" ], "type": "time", "id": "GDS2034_2" }, { "dataset_id": "GDS2034", "description": "6 h", "sample_id": [ "GSM92196", "GSM92197" ], "type": "time", "id": "GDS2034_3" }, { "dataset_id": "GDS2034", "description": "8 h", "sample_id": [ "GSM92198", "GSM92199" ], "type": "time", "id": "GDS2034_4" } ], "taxid": "9606", "genes": 16150, "aggregation_function": "mean", "name": "GDS2034", "version": 1.0, "instances": "8", "variables": 16152, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2034.tab", "compression": "gz" } ], [ [ "GDS2035.tab" ], { "title": "Vectorless gravity effect on T cell activation", "description": "Analysis of T cells costimulated with concanavalin A and anti-CD28 antibody in a vectorless gravity environment, which approximates true freefall or microgravity experienced in spaceflight. Results provide insight into the molecular basis of the altered immune function experienced by astronauts.", "type": "Expression profiling by array", "pubmed_id": "16210397", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1709", "order": "none", "update_date": "Aug 24 2006", "subsets": [ { "dataset_id": "GDS2035", "description": "donor 2", "sample_id": [ "GSM24817", "GSM29564", "GSM29565", "GSM29566" ], "type": "individual", "id": "GDS2035_1" }, { "dataset_id": "GDS2035", "description": "donor 4", "sample_id": [ "GSM29567", "GSM29568", "GSM29569", "GSM29570" ], "type": "individual", "id": "GDS2035_2" }, { "dataset_id": "GDS2035", "description": "donor 5", "sample_id": [ "GSM29571", "GSM29572", "GSM29573", "GSM29574" ], "type": "individual", "id": "GDS2035_3" }, { "dataset_id": "GDS2035", "description": "terrestrial gravity", "sample_id": [ "GSM24817", "GSM29564", "GSM29567", "GSM29568", "GSM29571", "GSM29572" ], "type": "stress", "id": "GDS2035_4" }, { "dataset_id": "GDS2035", "description": "vectorless gravity", "sample_id": [ "GSM29565", "GSM29566", "GSM29569", "GSM29570", "GSM29573", "GSM29574" ], "type": "stress", "id": "GDS2035_5" }, { "dataset_id": "GDS2035", "description": "unactivated", "sample_id": [ "GSM24817", "GSM29565", "GSM29567", "GSM29569", "GSM29571", "GSM29573" ], "type": "protocol", "id": "GDS2035_6" }, { "dataset_id": "GDS2035", "description": "activated", "sample_id": [ "GSM29564", "GSM29566", "GSM29568", "GSM29570", "GSM29572", "GSM29574" ], "type": "protocol", "id": "GDS2035_7" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2035", "version": 1.0, "instances": "12", "variables": 8553, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2035.tab", "compression": "gz" } ], [ [ "GDS2036.tab" ], { "title": "Macrophage response to hypoxia", "description": "Expression profiling of cultured macrophages subjected to hypoxia for 24 hours. Macrophages were derived from the mononuclear cells of 4 healthy donors.", "type": "Expression profiling by array", "pubmed_id": "16741148", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4630", "order": "none", "update_date": "May 25 2006", "subsets": [ { "dataset_id": "GDS2036", "description": "hypoxia", "sample_id": [ "GSM103752", "GSM103753" ], "type": "stress", "id": "GDS2036_1" }, { "dataset_id": "GDS2036", "description": "normoxia", "sample_id": [ "GSM103754", "GSM103755" ], "type": "stress", "id": "GDS2036_2" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS2036", "version": 1.0, "instances": "4", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2036.tab", "compression": "gz" } ], [ [ "GDS2037.tab" ], { "title": "Anesthesia and fear conditioning effect on amygdala", "description": "Analysis of basolateral amygdalae from animals following isoflurane treatment, pain treatment, or fear conditioning alone or in combination with isoflurane treatment. Fear conditioning leads to long-term memory formation. Isoflurane is a general anesthetic and amnestic agent.", "type": "Expression profiling by array", "pubmed_id": "16632822", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE1779", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2037", "description": "control", "sample_id": [ "GSM30790", "GSM30791", "GSM30792", "GSM30793", "GSM30794", "GSM30795", "GSM30796", "GSM30797", "GSM30798", "GSM99800", "GSM99801", "GSM99802", "GSM99803", "GSM99804" ], "type": "shock", "id": "GDS2037_1" }, { "dataset_id": "GDS2037", "description": "pain", "sample_id": [ "GSM30799", "GSM30800", "GSM30801", "GSM30802", "GSM30803" ], "type": "shock", "id": "GDS2037_2" }, { "dataset_id": "GDS2037", "description": "fear", "sample_id": [ "GSM30804", "GSM30805", "GSM30806", "GSM30807", "GSM30808", "GSM30809", "GSM30810", "GSM30811", "GSM30812", "GSM30813" ], "type": "shock", "id": "GDS2037_3" }, { "dataset_id": "GDS2037", "description": "no drug", "sample_id": [ "GSM30790", "GSM30791", "GSM30792", "GSM30793", "GSM30794", "GSM30795", "GSM30796", "GSM30797", "GSM30798", "GSM30799", "GSM30800", "GSM30801", "GSM30802", "GSM30803", "GSM30804", "GSM30805", "GSM30806", "GSM30807", "GSM30808" ], "type": "agent", "id": "GDS2037_4" }, { "dataset_id": "GDS2037", "description": "isoflurane", "sample_id": [ "GSM99800", "GSM99801", "GSM99802", "GSM99803", "GSM99804", "GSM30809", "GSM30810", "GSM30811", "GSM30812", "GSM30813" ], "type": "agent", "id": "GDS2037_5" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2037", "version": 1.0, "instances": "29", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2037.tab", "compression": "gz" } ], [ [ "GDS2038.tab" ], { "title": "Epstein-Barr virus nuclear antigen 2 activation", "description": "Analysis of Epstein-Barr virus (EBV) negative B-cell lines BL41K3 and BJABK3 following activation of EBV nuclear antigen 2 (EBNA-2). EBNA-2 fused to the hormone-binding domain of the estrogen receptor, and EBNA-2 activated upon estrogen binding. Results identify EBNA-2 target genes.", "type": "Expression profiling by array", "pubmed_id": "16973580", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4525", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2038", "description": "BJABK3", "sample_id": [ "GSM101472", "GSM101473", "GSM101474", "GSM101475", "GSM101476", "GSM101477" ], "type": "cell line", "id": "GDS2038_1" }, { "dataset_id": "GDS2038", "description": "BL41K3", "sample_id": [ "GSM101478", "GSM101479", "GSM101480", "GSM101481" ], "type": "cell line", "id": "GDS2038_2" }, { "dataset_id": "GDS2038", "description": "control", "sample_id": [ "GSM101472", "GSM101473", "GSM101474", "GSM101478", "GSM101479" ], "type": "protocol", "id": "GDS2038_3" }, { "dataset_id": "GDS2038", "description": "EBNA-2 activated", "sample_id": [ "GSM101475", "GSM101476", "GSM101477", "GSM101480", "GSM101481" ], "type": "protocol", "id": "GDS2038_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2038", "version": 1.0, "instances": "10", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2038.tab", "compression": "gz" } ], [ [ "GDS2039.tab" ], { "title": "Endothelial cell morphogenesis (HG-U133A)", "description": "Analysis of microvascular endothelial cells stimulated to either proliferate or undergo tubulogenesis in vitro. Results provide insight into the molecular mechanisms underlying the regulation of endothelial cell morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "16618722", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3891", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2039", "description": "proliferation", "sample_id": [ "GSM88897", "GSM88898", "GSM88899", "GSM88900", "GSM88901" ], "type": "protocol", "id": "GDS2039_1" }, { "dataset_id": "GDS2039", "description": "tubulogenesis", "sample_id": [ "GSM88892", "GSM88893", "GSM88894", "GSM88895", "GSM88896" ], "type": "protocol", "id": "GDS2039_2" }, { "dataset_id": "GDS2039", "description": "0 h", "sample_id": [ "GSM88897" ], "type": "time", "id": "GDS2039_3" }, { "dataset_id": "GDS2039", "description": "0.5 h", "sample_id": [ "GSM88892", "GSM88898" ], "type": "time", "id": "GDS2039_4" }, { "dataset_id": "GDS2039", "description": "1 h", "sample_id": [ "GSM88893", "GSM88899" ], "type": "time", "id": "GDS2039_5" }, { "dataset_id": "GDS2039", "description": "2 h", "sample_id": [ "GSM88894", "GSM88900" ], "type": "time", "id": "GDS2039_6" }, { "dataset_id": "GDS2039", "description": "4 h", "sample_id": [ "GSM88895", "GSM88901" ], "type": "time", "id": "GDS2039_7" }, { "dataset_id": "GDS2039", "description": "8 h", "sample_id": [ "GSM88896" ], "type": "time", "id": "GDS2039_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2039", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2039.tab", "compression": "gz" } ], [ [ "GDS2040.tab" ], { "title": "Endothelial cell morphogenesis (HG-U133B)", "description": "Analysis of microvascular endothelial cells stimulated to either proliferate or undergo tubulogenesis in vitro. Results provide insight into the molecular mechanisms underlying the regulation of endothelial cell morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "16618722", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3891", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2040", "description": "proliferation", "sample_id": [ "GSM88907", "GSM88908", "GSM88909", "GSM88910", "GSM88911" ], "type": "protocol", "id": "GDS2040_1" }, { "dataset_id": "GDS2040", "description": "tubulogenesis", "sample_id": [ "GSM88902", "GSM88903", "GSM88904", "GSM88905", "GSM88906" ], "type": "protocol", "id": "GDS2040_2" }, { "dataset_id": "GDS2040", "description": "0 h", "sample_id": [ "GSM88907" ], "type": "time", "id": "GDS2040_3" }, { "dataset_id": "GDS2040", "description": "0.5 h", "sample_id": [ "GSM88902", "GSM88908" ], "type": "time", "id": "GDS2040_4" }, { "dataset_id": "GDS2040", "description": "1 h", "sample_id": [ "GSM88903", "GSM88909" ], "type": "time", "id": "GDS2040_5" }, { "dataset_id": "GDS2040", "description": "2 h", "sample_id": [ "GSM88904", "GSM88910" ], "type": "time", "id": "GDS2040_6" }, { "dataset_id": "GDS2040", "description": "4 h", "sample_id": [ "GSM88905", "GSM88911" ], "type": "time", "id": "GDS2040_7" }, { "dataset_id": "GDS2040", "description": "8 h", "sample_id": [ "GSM88906" ], "type": "time", "id": "GDS2040_8" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2040", "version": 1.0, "instances": "10", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2040.tab", "compression": "gz" } ], [ [ "GDS2041.tab" ], { "title": "Type II activated macrophage", "description": "Analysis of type II activated macrophages (Mphi) generated by stimulation with lipopolysaccharide (LPS) in the presence of IgG immune complexes. Type II activated Mphi produce high levels of IL-10 and low levels of IL-12 relative to classically activated Mphi stimulated with LPS alone.", "type": "Expression profiling by array", "pubmed_id": "16905575", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4811", "order": "none", "update_date": "Aug 29 2006", "subsets": [ { "dataset_id": "GDS2041", "description": "LPS", "sample_id": [ "GSM108495", "GSM110213" ], "type": "agent", "id": "GDS2041_1" }, { "dataset_id": "GDS2041", "description": "LPS and IgG immune complexes", "sample_id": [ "GSM108496", "GSM110238" ], "type": "agent", "id": "GDS2041_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2041", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2041.tab", "compression": "gz" } ], [ [ "GDS2042.tab" ], { "title": "Celiac disease: intraepithelial cytotoxic T lymphocytes", "description": "Analysis of intraepithelial cytotoxic T lymphocytes (IE-CTLs), aberrantly expressing the cytolytic natural killer (NK) cell lineage receptor NKG2C, from celiac disease patients. Results provide insight into the role of IE-CTLs reprogrammed into NK-like cells in the pathogenesis of celiac disease.", "type": "Expression profiling by array", "pubmed_id": "16682498", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4592", "order": "none", "update_date": "Mar 16 2007", "subsets": [ { "dataset_id": "GDS2042", "description": "peripheral blood", "sample_id": [ "GSM102785", "GSM102786", "GSM102787", "GSM102788", "GSM102789", "GSM102790" ], "type": "cell type", "id": "GDS2042_1" }, { "dataset_id": "GDS2042", "description": "intraepithelial", "sample_id": [ "GSM102681", "GSM102782", "GSM102783", "GSM102784" ], "type": "cell type", "id": "GDS2042_2" }, { "dataset_id": "GDS2042", "description": "NKG2C negative", "sample_id": [ "GSM102681", "GSM102783", "GSM102785", "GSM102787", "GSM102789" ], "type": "other", "id": "GDS2042_3" }, { "dataset_id": "GDS2042", "description": "NKG2C positive", "sample_id": [ "GSM102782", "GSM102784", "GSM102786", "GSM102788", "GSM102790" ], "type": "other", "id": "GDS2042_4" }, { "dataset_id": "GDS2042", "description": "pt 2", "sample_id": [ "GSM102789", "GSM102790" ], "type": "individual", "id": "GDS2042_5" }, { "dataset_id": "GDS2042", "description": "pt 3", "sample_id": [ "GSM102785", "GSM102786" ], "type": "individual", "id": "GDS2042_6" }, { "dataset_id": "GDS2042", "description": "pt 8", "sample_id": [ "GSM102787", "GSM102788" ], "type": "individual", "id": "GDS2042_7" }, { "dataset_id": "GDS2042", "description": "pt 6", "sample_id": [ "GSM102681", "GSM102782" ], "type": "individual", "id": "GDS2042_8" }, { "dataset_id": "GDS2042", "description": "pt 7", "sample_id": [ "GSM102783", "GSM102784" ], "type": "individual", "id": "GDS2042_9" }, { "dataset_id": "GDS2042", "description": "celiac disease", "sample_id": [ "GSM102785", "GSM102786", "GSM102787", "GSM102788", "GSM102681", "GSM102782", "GSM102783", "GSM102784" ], "type": "disease state", "id": "GDS2042_10" }, { "dataset_id": "GDS2042", "description": "CMV seropositive", "sample_id": [ "GSM102789", "GSM102790" ], "type": "disease state", "id": "GDS2042_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2042", "version": 1.0, "instances": "10", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2042.tab", "compression": "gz" } ], [ [ "GDS2043.tab" ], { "title": "Bisphenol A effect on testicular Sertoli cells: time course", "description": "Analysis of testicular Sertoli cells (TSCs) treated with bisphenol A (BPA) for up to 12 hours. BPA, an industrial chemical that acts as an environmental estrogen, induces TSC death. Results provide insight into the mechanisms underlying TSC injury, which is accompanied by ER stress, induced by BPA.", "type": "Expression profiling by array", "pubmed_id": "16713995", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4650", "order": "ordered", "update_date": "May 26 2006", "subsets": [ { "dataset_id": "GDS2043", "description": "0 h", "sample_id": [ "GSM104743", "GSM104744" ], "type": "time", "id": "GDS2043_1" }, { "dataset_id": "GDS2043", "description": "3 h", "sample_id": [ "GSM104745", "GSM104746" ], "type": "time", "id": "GDS2043_2" }, { "dataset_id": "GDS2043", "description": "6 h", "sample_id": [ "GSM104747", "GSM104748" ], "type": "time", "id": "GDS2043_3" }, { "dataset_id": "GDS2043", "description": "12 h", "sample_id": [ "GSM104749", "GSM104750" ], "type": "time", "id": "GDS2043_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2043", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2043.tab", "compression": "gz" } ], [ [ "GDS2044.tab" ], { "title": "DNA demethylation effect on dermal fibroblasts", "description": "Analysis of primary dermal fibroblasts treated with the DNA methyltransferase inhibitor 5-aza-2'-deoxycytidine (Aza-dC) for 96 hours. This study seeks to identify developmental regulator genes whose expression in terminally differentiated cells is inhibited by DNA methylation.", "type": "Expression profiling by array", "pubmed_id": "16870175", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4696", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2044", "description": "untreated", "sample_id": [ "GSM106152", "GSM106154", "GSM106156" ], "type": "agent", "id": "GDS2044_1" }, { "dataset_id": "GDS2044", "description": "Aza-dC", "sample_id": [ "GSM106151", "GSM106153", "GSM106155" ], "type": "agent", "id": "GDS2044_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2044", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2044.tab", "compression": "gz" } ], [ [ "GDS2045.tab" ], { "title": "Ductal carcinoma in situ to invasive ductal carcinoma progression (HG-U133A)", "description": "Analysis of preinvasive ductal carcinoma in situ (DCIS) and invasive ductal carcinoma (IDC) tumors. Pairs of patient-matched DCIS and IDC tumor specimens analyzed. Results provide insight into the mechanisms underlying the progression of DCIS to IDC.", "type": "Expression profiling by array", "pubmed_id": "16707453", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE3893", "order": "none", "update_date": "May 26 2006", "subsets": [ { "dataset_id": "GDS2045", "description": "DCIS", "sample_id": [ "GSM88849", "GSM88851", "GSM88853", "GSM88855", "GSM88857" ], "type": "disease state", "id": "GDS2045_1" }, { "dataset_id": "GDS2045", "description": "IDC", "sample_id": [ "GSM88848", "GSM88850", "GSM88852", "GSM88854", "GSM88856" ], "type": "disease state", "id": "GDS2045_2" }, { "dataset_id": "GDS2045", "description": "T374", "sample_id": [ "GSM88848", "GSM88849" ], "type": "individual", "id": "GDS2045_3" }, { "dataset_id": "GDS2045", "description": "T478", "sample_id": [ "GSM88850", "GSM88851" ], "type": "individual", "id": "GDS2045_4" }, { "dataset_id": "GDS2045", "description": "T661", "sample_id": [ "GSM88852", "GSM88853" ], "type": "individual", "id": "GDS2045_5" }, { "dataset_id": "GDS2045", "description": "T787", "sample_id": [ "GSM88854", "GSM88855" ], "type": "individual", "id": "GDS2045_6" }, { "dataset_id": "GDS2045", "description": "T808", "sample_id": [ "GSM88856", "GSM88857" ], "type": "individual", "id": "GDS2045_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2045", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2045.tab", "compression": "gz" } ], [ [ "GDS2046.tab" ], { "title": "Ductal carcinoma in situ to invasive ductal carcinoma progression (HG-U133 2.0)", "description": "Analysis of preinvasive ductal carcinoma in situ (DCIS) and invasive ductal carcinoma (IDC) tumors. Pairs of patient-matched DCIS and IDC tumor specimens analyzed. Results provide insight into the mechanisms underlying the progression of DCIS to IDC.", "type": "Expression profiling by array", "pubmed_id": "16707453", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE3893", "order": "none", "update_date": "May 26 2006", "subsets": [ { "dataset_id": "GDS2046", "description": "DCIS", "sample_id": [ "GSM88859", "GSM88861", "GSM88863", "GSM88865", "GSM88867", "GSM88869", "GSM88871" ], "type": "disease state", "id": "GDS2046_1" }, { "dataset_id": "GDS2046", "description": "IDC", "sample_id": [ "GSM88858", "GSM88860", "GSM88862", "GSM88864", "GSM88866", "GSM88868", "GSM88870" ], "type": "disease state", "id": "GDS2046_2" }, { "dataset_id": "GDS2046", "description": "T396", "sample_id": [ "GSM88858", "GSM88859" ], "type": "individual", "id": "GDS2046_3" }, { "dataset_id": "GDS2046", "description": "T706", "sample_id": [ "GSM88860", "GSM88861" ], "type": "individual", "id": "GDS2046_4" }, { "dataset_id": "GDS2046", "description": "T796", "sample_id": [ "GSM88862", "GSM88863" ], "type": "individual", "id": "GDS2046_5" }, { "dataset_id": "GDS2046", "description": "T661", "sample_id": [ "GSM88864", "GSM88865" ], "type": "individual", "id": "GDS2046_6" }, { "dataset_id": "GDS2046", "description": "T787", "sample_id": [ "GSM88866", "GSM88867" ], "type": "individual", "id": "GDS2046_7" }, { "dataset_id": "GDS2046", "description": "T808", "sample_id": [ "GSM88868", "GSM88869" ], "type": "individual", "id": "GDS2046_8" }, { "dataset_id": "GDS2046", "description": "H191", "sample_id": [ "GSM88870", "GSM88871" ], "type": "individual", "id": "GDS2046_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2046", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2046.tab", "compression": "gz" } ], [ [ "GDS2047.tab" ], { "title": "Lipopolysaccharide effect on macrophages pretreated with carbon monoxide: time course", "description": "Analysis of RAW 264.7 macrophages exposed to carbon monoxide (CO) for 3 hours and subsequently treated with lipopolysaccharide (LPS) for up to 4 hours. CO suppresses proinflammatory responses elicited by LPS. Results indicate that PPARgamma mediates the anti-inflammatory effects of CO.", "type": "Expression profiling by array", "pubmed_id": "16713977", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1906", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2047", "description": "LPS", "sample_id": [ "GSM34219", "GSM34220", "GSM34221", "GSM34222", "GSM34223", "GSM34224" ], "type": "agent", "id": "GDS2047_1" }, { "dataset_id": "GDS2047", "description": "CO and LPS", "sample_id": [ "GSM34225", "GSM34226", "GSM34228", "GSM34229", "GSM34230", "GSM34231" ], "type": "agent", "id": "GDS2047_2" }, { "dataset_id": "GDS2047", "description": "0 min", "sample_id": [ "GSM34219", "GSM34225" ], "type": "time", "id": "GDS2047_3" }, { "dataset_id": "GDS2047", "description": "15 min", "sample_id": [ "GSM34220", "GSM34226" ], "type": "time", "id": "GDS2047_4" }, { "dataset_id": "GDS2047", "description": "30 min", "sample_id": [ "GSM34221", "GSM34228" ], "type": "time", "id": "GDS2047_5" }, { "dataset_id": "GDS2047", "description": "60 min", "sample_id": [ "GSM34222", "GSM34229" ], "type": "time", "id": "GDS2047_6" }, { "dataset_id": "GDS2047", "description": "120 min", "sample_id": [ "GSM34223", "GSM34230" ], "type": "time", "id": "GDS2047_7" }, { "dataset_id": "GDS2047", "description": "240 min", "sample_id": [ "GSM34224", "GSM34231" ], "type": "time", "id": "GDS2047_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2047", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2047.tab", "compression": "gz" } ], [ [ "GDS2048.tab" ], { "title": "Acute rotavirus infection: peripheral blood mononuclear cells", "description": "Expression profiling of peripheral blood mononuclear cells (PBMCs) from children with acute rotavirus diarrhea. Rotavirus is the most common cause of severe diarrhea in children.", "type": "Expression profiling by array", "pubmed_id": "17267507", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE2729", "order": "none", "update_date": "Mar 16 2007", "subsets": [ { "dataset_id": "GDS2048", "description": "healthy", "sample_id": [ "GSM52859", "GSM52860", "GSM52861", "GSM52862", "GSM52863", "GSM52864", "GSM52865", "GSM52866" ], "type": "disease state", "id": "GDS2048_1" }, { "dataset_id": "GDS2048", "description": "convalescence phase", "sample_id": [ "GSM52877", "GSM52878", "GSM52879", "GSM52880", "GSM52881" ], "type": "disease state", "id": "GDS2048_2" }, { "dataset_id": "GDS2048", "description": "acute rotavirus infection", "sample_id": [ "GSM52867", "GSM52868", "GSM52869", "GSM52870", "GSM52871", "GSM52872", "GSM52873", "GSM52874", "GSM52875", "GSM52876" ], "type": "disease state", "id": "GDS2048_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2048", "version": 1.0, "instances": "23", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2048.tab", "compression": "gz" } ], [ [ "GDS2049.tab" ], { "title": "Glycosylphosphatidylinositol-specific phospholipase D overexpression effect on hepatoma cells: time course", "description": "Analysis of hepatoma HepG2 cells 6 and 12 hours following transduction with a recombinant adenovirus expressing glycosylphosphatidylinositol-specific phospholipase D (GPI-PLD). Results provide insight into the role of GPI-PLD in hepatic lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "16595594", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4731", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2049", "description": "6 h", "sample_id": [ "GSM106836", "GSM106837", "GSM106838", "GSM106839", "GSM106840", "GSM106841", "GSM106842", "GSM106843" ], "type": "time", "id": "GDS2049_1" }, { "dataset_id": "GDS2049", "description": "12 h", "sample_id": [ "GSM106844", "GSM106845", "GSM106846", "GSM106847", "GSM106848", "GSM106849", "GSM106850", "GSM106851" ], "type": "time", "id": "GDS2049_2" }, { "dataset_id": "GDS2049", "description": "control", "sample_id": [ "GSM106836", "GSM106837", "GSM106838", "GSM106839", "GSM106844", "GSM106845", "GSM106846", "GSM106847" ], "type": "protocol", "id": "GDS2049_3" }, { "dataset_id": "GDS2049", "description": "GPI-PLD overexpression", "sample_id": [ "GSM106840", "GSM106841", "GSM106842", "GSM106843", "GSM106848", "GSM106849", "GSM106850", "GSM106851" ], "type": "protocol", "id": "GDS2049_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2049", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2049.tab", "compression": "gz" } ], [ [ "GDS205.tab" ], { "title": "Mammary tissue profile", "description": "Variety of bovine tissues hybridized against the bovine mammary (BMAM) array. Reference is bovine macrophage (BovMac) cell line. Contribution towards development of a mammary gland gene expression profile.", "type": "Expression profiling by array", "pubmed_id": "14559974", "platform": "GPL245", "platform_organism": "Bos taurus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "3888", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE279", "order": "none", "update_date": "Apr 02 2003", "subsets": [ { "dataset_id": "GDS205", "description": "adipose", "sample_id": [ "GSM3857" ], "type": "tissue", "id": "GDS205_1" }, { "dataset_id": "GDS205", "description": "adrenal", "sample_id": [ "GSM3858" ], "type": "tissue", "id": "GDS205_2" }, { "dataset_id": "GDS205", "description": "ileum", "sample_id": [ "GSM3859" ], "type": "tissue", "id": "GDS205_3" }, { "dataset_id": "GDS205", "description": "liver", "sample_id": [ "GSM3860" ], "type": "tissue", "id": "GDS205_4" }, { "dataset_id": "GDS205", "description": "lymph", "sample_id": [ "GSM3861" ], "type": "tissue", "id": "GDS205_5" }, { "dataset_id": "GDS205", "description": "spleen", "sample_id": [ "GSM3862" ], "type": "tissue", "id": "GDS205_6" }, { "dataset_id": "GDS205", "description": "thymus", "sample_id": [ "GSM3863" ], "type": "tissue", "id": "GDS205_7" }, { "dataset_id": "GDS205", "description": "pre-pubertal mammary gland", "sample_id": [ "GSM3864" ], "type": "tissue", "id": "GDS205_8" }, { "dataset_id": "GDS205", "description": "BovMav cell line", "sample_id": [ "GSM3868", "GSM3869" ], "type": "tissue", "id": "GDS205_9" } ], "taxid": "9913", "genes": 1031, "aggregation_function": "mean", "name": "GDS205", "version": 1.0, "instances": "10", "variables": 1033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS205.tab", "compression": "gz" } ], [ [ "GDS2050.tab" ], { "title": "Antitumor agent azinomycin B cellular effect: dose response", "description": "Analysis of cells following treatment with 10 or 100 ug/ml of azinomycin B, a naturally occurring antitumor agent that forms interstrand crosslinks within the major groove of DNA. Results indicate that azinomycin B alters the expression of genes associated with DNA damage and repair.", "type": "Expression profiling by array", "pubmed_id": "16720269", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4311", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2050", "description": "ethanol (control)", "sample_id": [ "GSM98594", "GSM98596", "GSM98598" ], "type": "agent", "id": "GDS2050_1" }, { "dataset_id": "GDS2050", "description": "azinomycin B", "sample_id": [ "GSM98595", "GSM98597", "GSM98599" ], "type": "agent", "id": "GDS2050_2" }, { "dataset_id": "GDS2050", "description": "10 ug/ml", "sample_id": [ "GSM98598", "GSM98599" ], "type": "dose", "id": "GDS2050_3" }, { "dataset_id": "GDS2050", "description": "100 ug/ml", "sample_id": [ "GSM98595", "GSM98594", "GSM98596", "GSM98597" ], "type": "dose", "id": "GDS2050_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2050", "version": 1.0, "instances": "6", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2050.tab", "compression": "gz" } ], [ [ "GDS2051.tab" ], { "title": "Peritoneal mesotheliomas induced by o-nitrotoluene and bromochloracetic acid: dose response", "description": "Analysis of peritoneal mesotheliomas induced by various concentrations of o-nitrotoluene (o-NT) or bromochloracetic acid (BCA). o-NT is a high production chemical. BCA is a by-product of drinking water disinfection. Results provide insight into the mechanisms underlying mesothelioma formation.", "type": "Expression profiling by array", "pubmed_id": [ "16460773", "16884916" ], "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log10 ratio", "reference_series": "GSE4682", "order": "none", "update_date": "Jun 02 2006", "subsets": [ { "dataset_id": "GDS2051", "description": "1250 ppm", "sample_id": [ "GSM105783", "GSM105784", "GSM105785", "GSM105786" ], "type": "dose", "id": "GDS2051_1" }, { "dataset_id": "GDS2051", "description": "2000 ppm", "sample_id": [ "GSM105787", "GSM105788", "GSM105789", "GSM105790" ], "type": "dose", "id": "GDS2051_2" }, { "dataset_id": "GDS2051", "description": "250 mg/l", "sample_id": [ "GSM105775", "GSM105776", "GSM105777", "GSM105778" ], "type": "dose", "id": "GDS2051_3" }, { "dataset_id": "GDS2051", "description": "500 mg/l", "sample_id": [ "GSM105779", "GSM105780" ], "type": "dose", "id": "GDS2051_4" }, { "dataset_id": "GDS2051", "description": "1000 mg/l", "sample_id": [ "GSM105781", "GSM105782" ], "type": "dose", "id": "GDS2051_5" }, { "dataset_id": "GDS2051", "description": "o-NT", "sample_id": [ "GSM105783", "GSM105784", "GSM105785", "GSM105786", "GSM105787", "GSM105788", "GSM105789", "GSM105790" ], "type": "agent", "id": "GDS2051_6" }, { "dataset_id": "GDS2051", "description": "BCA", "sample_id": [ "GSM105775", "GSM105776", "GSM105777", "GSM105778", "GSM105779", "GSM105780", "GSM105781", "GSM105782" ], "type": "agent", "id": "GDS2051_7" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2051", "version": 1.0, "instances": "16", "variables": 17253, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2051.tab", "compression": "gz" } ], [ [ "GDS2052.tab" ], { "title": "Endometrium throughout the menstrual cycle", "description": "Analysis of the normal endometrium at distinct phases of the menstrual cycle. Results provide insight into whether molecular profiles of the endometrium can distinguish the different phases of the menstrual cycle.", "type": "Expression profiling by array", "pubmed_id": "16306079", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE4888", "order": "none", "update_date": "Jan 05 2007", "subsets": [ { "dataset_id": "GDS2052", "description": "proliferative phase", "sample_id": [ "GSM109814", "GSM109815", "GSM109816", "GSM109817" ], "type": "other", "id": "GDS2052_1" }, { "dataset_id": "GDS2052", "description": "early secretory phase", "sample_id": [ "GSM109820", "GSM109821", "GSM109822" ], "type": "other", "id": "GDS2052_2" }, { "dataset_id": "GDS2052", "description": "mid secretory phase", "sample_id": [ "GSM109824", "GSM109825", "GSM109826", "GSM109827", "GSM109828", "GSM109829", "GSM109830", "GSM109831" ], "type": "other", "id": "GDS2052_3" }, { "dataset_id": "GDS2052", "description": "late secretory phase", "sample_id": [ "GSM109834", "GSM109835", "GSM109836", "GSM109837", "GSM109838", "GSM109839" ], "type": "other", "id": "GDS2052_4" }, { "dataset_id": "GDS2052", "description": "ambiguous phase", "sample_id": [ "GSM109818", "GSM109819", "GSM109823", "GSM109832", "GSM109833", "GSM109840" ], "type": "other", "id": "GDS2052_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2052", "version": 1.0, "instances": "27", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2052.tab", "compression": "gz" } ], [ [ "GDS2053.tab" ], { "title": "1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned substantia nigra: time course", "description": "Analysis of substantia nigrae (SN) injured by treatment with the dopaminergic neurotoxin 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine at 1 and 7 days postlesion. Parkinson's disease (PD) culminates in the loss of dopaminergic neurons of the SN. Results provide insight into the pathogenesis of PD.", "type": "Expression profiling by array", "pubmed_id": "15329391", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE4788", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2053", "description": "untreated", "sample_id": [ "GSM107845", "GSM108079", "GSM108080", "GSM108081" ], "type": "agent", "id": "GDS2053_1" }, { "dataset_id": "GDS2053", "description": "1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine", "sample_id": [ "GSM108084", "GSM108085", "GSM108086", "GSM108087", "GSM108088", "GSM108089", "GSM108090", "GSM108091" ], "type": "agent", "id": "GDS2053_2" }, { "dataset_id": "GDS2053", "description": "control", "sample_id": [ "GSM107845", "GSM108079", "GSM108080", "GSM108081" ], "type": "time", "id": "GDS2053_3" }, { "dataset_id": "GDS2053", "description": "1 d", "sample_id": [ "GSM108084", "GSM108085", "GSM108086", "GSM108087" ], "type": "time", "id": "GDS2053_4" }, { "dataset_id": "GDS2053", "description": "7 d", "sample_id": [ "GSM108088", "GSM108089", "GSM108090", "GSM108091" ], "type": "time", "id": "GDS2053_5" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS2053", "version": 1.0, "instances": "12", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2053.tab", "compression": "gz" } ], [ [ "GDS2054.tab" ], { "title": "Chronic endoplasmic reticulum stress imposed by misfolded surfactant protein C (HG-U133B)", "description": "Analysis of cells that constitutively express misfolded surfactant protein C, which induces chronic endoplasmic reticulum (ER) stress and cytotoxicity. Results provide evidence for an NF-kB-dependent adaptive response to the chronic ER stress imposed by the misfolded protein.", "type": "Expression profiling by array", "pubmed_id": "16449190", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2980", "order": "none", "update_date": "Jun 08 2006", "subsets": [ { "dataset_id": "GDS2054", "description": "empty vector", "sample_id": [ "GSM65134", "GSM65135", "GSM65136" ], "type": "agent", "id": "GDS2054_1" }, { "dataset_id": "GDS2054", "description": "wild-type surfactant protein C", "sample_id": [ "GSM65131", "GSM65132", "GSM65133" ], "type": "agent", "id": "GDS2054_2" }, { "dataset_id": "GDS2054", "description": "misfolded surfactant protein C", "sample_id": [ "GSM65137", "GSM65138", "GSM65139" ], "type": "agent", "id": "GDS2054_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2054", "version": 1.0, "instances": "9", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2054.tab", "compression": "gz" } ], [ [ "GDS2055.tab" ], { "title": "Skeletal muscle types (HG-U133A)", "description": "Analysis of tibialis anterior, deltoid, quadriceps, and gastrocnemius muscles obtained at autopsy from pediatric and geriatric subjects unaffected by neuromuscular disease. Results provide insight into the molecular basis of the selective involvement of different muscles in muscular dystrophies.", "type": "Expression profiling by array", "pubmed_id": "15962335", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE4667", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2055", "description": "pediatric", "sample_id": [ "GSM105069", "GSM105070", "GSM105071", "GSM105072", "GSM105073", "GSM105074", "GSM105075", "GSM105076", "GSM105077", "GSM105078", "GSM105079", "GSM105080", "GSM105081", "GSM105082", "GSM105083" ], "type": "age", "id": "GDS2055_1" }, { "dataset_id": "GDS2055", "description": "geriatric", "sample_id": [ "GSM105084", "GSM105085", "GSM105086", "GSM105087", "GSM105088", "GSM105089", "GSM105090", "GSM105091", "GSM105092", "GSM105093", "GSM105094", "GSM105095", "GSM105096", "GSM105097", "GSM105098", "GSM105099", "GSM105100", "GSM105101", "GSM105102", "GSM105103" ], "type": "age", "id": "GDS2055_2" }, { "dataset_id": "GDS2055", "description": "quadriceps", "sample_id": [ "GSM105069", "GSM105073", "GSM105078", "GSM105081", "GSM105084", "GSM105089", "GSM105095", "GSM105099", "GSM105101" ], "type": "tissue", "id": "GDS2055_3" }, { "dataset_id": "GDS2055", "description": "deltoid", "sample_id": [ "GSM105070", "GSM105072", "GSM105076", "GSM105080", "GSM105087", "GSM105091", "GSM105094", "GSM105096", "GSM105100" ], "type": "tissue", "id": "GDS2055_4" }, { "dataset_id": "GDS2055", "description": "gastrocnemius", "sample_id": [ "GSM105071", "GSM105074", "GSM105077", "GSM105082", "GSM105085", "GSM105090", "GSM105092", "GSM105097", "GSM105103" ], "type": "tissue", "id": "GDS2055_5" }, { "dataset_id": "GDS2055", "description": "tibialis anterior", "sample_id": [ "GSM105075", "GSM105079", "GSM105083", "GSM105086", "GSM105088", "GSM105093", "GSM105098", "GSM105102" ], "type": "tissue", "id": "GDS2055_6" }, { "dataset_id": "GDS2055", "description": "1", "sample_id": [ "GSM105069", "GSM105070", "GSM105071" ], "type": "individual", "id": "GDS2055_7" }, { "dataset_id": "GDS2055", "description": "2", "sample_id": [ "GSM105072", "GSM105073", "GSM105074", "GSM105075" ], "type": "individual", "id": "GDS2055_8" }, { "dataset_id": "GDS2055", "description": "3", "sample_id": [ "GSM105076", "GSM105077", "GSM105078", "GSM105079" ], "type": "individual", "id": "GDS2055_9" }, { "dataset_id": "GDS2055", "description": "4", "sample_id": [ "GSM105080", "GSM105081", "GSM105082", "GSM105083" ], "type": "individual", "id": "GDS2055_10" }, { "dataset_id": "GDS2055", "description": "5", "sample_id": [ "GSM105084", "GSM105085", "GSM105086", "GSM105087" ], "type": "individual", "id": "GDS2055_11" }, { "dataset_id": "GDS2055", "description": "6", "sample_id": [ "GSM105088", "GSM105089", "GSM105090", "GSM105091" ], "type": "individual", "id": "GDS2055_12" }, { "dataset_id": "GDS2055", "description": "7", "sample_id": [ "GSM105092", "GSM105093", "GSM105094", "GSM105095" ], "type": "individual", "id": "GDS2055_13" }, { "dataset_id": "GDS2055", "description": "8", "sample_id": [ "GSM105096", "GSM105097", "GSM105098", "GSM105099" ], "type": "individual", "id": "GDS2055_14" }, { "dataset_id": "GDS2055", "description": "9", "sample_id": [ "GSM105100", "GSM105101", "GSM105102", "GSM105103" ], "type": "individual", "id": "GDS2055_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2055", "version": 1.0, "instances": "35", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2055.tab", "compression": "gz" } ], [ [ "GDS2056.tab" ], { "title": "Skeletal muscle types (HG-U133B)", "description": "Analysis of tibialis anterior, deltoid, quadriceps, and gastrocnemius muscles obtained at autopsy from pediatric and geriatric subjects unaffected by neuromuscular disease. Results provide insight into the molecular basis of the selective involvement of different muscles in muscular dystrophies.", "type": "Expression profiling by array", "pubmed_id": "15962335", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE4667", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2056", "description": "pediatric", "sample_id": [ "GSM105104", "GSM105105", "GSM105106", "GSM105107", "GSM105108", "GSM105109", "GSM105110", "GSM105111", "GSM105112", "GSM105113", "GSM105114", "GSM105115", "GSM105116", "GSM105117", "GSM105118" ], "type": "age", "id": "GDS2056_1" }, { "dataset_id": "GDS2056", "description": "geriatric", "sample_id": [ "GSM105119", "GSM105120", "GSM105121", "GSM105122", "GSM105123", "GSM105124", "GSM105125", "GSM105126", "GSM105127", "GSM105128", "GSM105129", "GSM105130", "GSM105131", "GSM105132", "GSM105133", "GSM105134", "GSM105135", "GSM105136", "GSM105137", "GSM105138" ], "type": "age", "id": "GDS2056_2" }, { "dataset_id": "GDS2056", "description": "quadriceps", "sample_id": [ "GSM105104", "GSM105108", "GSM105113", "GSM105116", "GSM105119", "GSM105124", "GSM105130", "GSM105134", "GSM105136" ], "type": "tissue", "id": "GDS2056_3" }, { "dataset_id": "GDS2056", "description": "deltoid", "sample_id": [ "GSM105105", "GSM105107", "GSM105111", "GSM105115", "GSM105122", "GSM105126", "GSM105129", "GSM105131", "GSM105135" ], "type": "tissue", "id": "GDS2056_4" }, { "dataset_id": "GDS2056", "description": "gastrocnemius", "sample_id": [ "GSM105106", "GSM105109", "GSM105112", "GSM105117", "GSM105120", "GSM105125", "GSM105127", "GSM105132", "GSM105138" ], "type": "tissue", "id": "GDS2056_5" }, { "dataset_id": "GDS2056", "description": "tibialis anterior", "sample_id": [ "GSM105110", "GSM105114", "GSM105118", "GSM105121", "GSM105123", "GSM105128", "GSM105133", "GSM105137" ], "type": "tissue", "id": "GDS2056_6" }, { "dataset_id": "GDS2056", "description": "1", "sample_id": [ "GSM105104", "GSM105105", "GSM105106" ], "type": "individual", "id": "GDS2056_7" }, { "dataset_id": "GDS2056", "description": "2", "sample_id": [ "GSM105107", "GSM105108", "GSM105109", "GSM105110" ], "type": "individual", "id": "GDS2056_8" }, { "dataset_id": "GDS2056", "description": "3", "sample_id": [ "GSM105111", "GSM105112", "GSM105113", "GSM105114" ], "type": "individual", "id": "GDS2056_9" }, { "dataset_id": "GDS2056", "description": "4", "sample_id": [ "GSM105115", "GSM105116", "GSM105117", "GSM105118" ], "type": "individual", "id": "GDS2056_10" }, { "dataset_id": "GDS2056", "description": "5", "sample_id": [ "GSM105119", "GSM105120", "GSM105121", "GSM105122" ], "type": "individual", "id": "GDS2056_11" }, { "dataset_id": "GDS2056", "description": "6", "sample_id": [ "GSM105123", "GSM105124", "GSM105125", "GSM105126" ], "type": "individual", "id": "GDS2056_12" }, { "dataset_id": "GDS2056", "description": "7", "sample_id": [ "GSM105127", "GSM105128", "GSM105129", "GSM105130" ], "type": "individual", "id": "GDS2056_13" }, { "dataset_id": "GDS2056", "description": "8", "sample_id": [ "GSM105131", "GSM105132", "GSM105133", "GSM105134" ], "type": "individual", "id": "GDS2056_14" }, { "dataset_id": "GDS2056", "description": "9", "sample_id": [ "GSM105135", "GSM105136", "GSM105137", "GSM105138" ], "type": "individual", "id": "GDS2056_15" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2056", "version": 1.0, "instances": "35", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2056.tab", "compression": "gz" } ], [ [ "GDS2057.tab" ], { "title": "Androgen receptor modulator effect: time course (HG-U133A)", "description": "Analysis of LNCaP cells treated for 6 and 24 hours with RTI-018, an androgen receptor (AR) ligand with a mechanism of action different from that of canonical agonists. Results provide insight into the link between RTI-018 induced AR conformational changes and its ability to regulate gene expression.", "type": "Expression profiling by array", "pubmed_id": "16574741", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4636", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2057", "description": "control", "sample_id": [ "GSM63051", "GSM64845", "GSM64855", "GSM64858", "GSM64861", "GSM64864" ], "type": "agent", "id": "GDS2057_1" }, { "dataset_id": "GDS2057", "description": "DHT", "sample_id": [ "GSM63122", "GSM64852", "GSM64856", "GSM64859", "GSM64862", "GSM64865" ], "type": "agent", "id": "GDS2057_2" }, { "dataset_id": "GDS2057", "description": "RTI-018", "sample_id": [ "GSM64853", "GSM64854", "GSM64857", "GSM64860", "GSM64863", "GSM64866" ], "type": "agent", "id": "GDS2057_3" }, { "dataset_id": "GDS2057", "description": "6 h", "sample_id": [ "GSM63051", "GSM63122", "GSM64854", "GSM64855", "GSM64856", "GSM64857", "GSM64861", "GSM64862", "GSM64863" ], "type": "time", "id": "GDS2057_4" }, { "dataset_id": "GDS2057", "description": "24 h", "sample_id": [ "GSM64845", "GSM64852", "GSM64853", "GSM64858", "GSM64859", "GSM64860", "GSM64864", "GSM64865", "GSM64866" ], "type": "time", "id": "GDS2057_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2057", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2057.tab", "compression": "gz" } ], [ [ "GDS2058.tab" ], { "title": "Androgen receptor modulator effect: time course (HG-U133B)", "description": "Analysis of LNCaP cells treated for 6 and 24 hours with RTI-018, an androgen receptor (AR) ligand with a mechanism of action different from that of canonical agonists. Results provide insight into the link between RTI-018 induced AR conformational changes and its ability to regulate gene expression.", "type": "Expression profiling by array", "pubmed_id": "16574741", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4636", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2058", "description": "control", "sample_id": [ "GSM64886", "GSM64889", "GSM64892", "GSM103556", "GSM103780", "GSM104079" ], "type": "agent", "id": "GDS2058_1" }, { "dataset_id": "GDS2058", "description": "DHT", "sample_id": [ "GSM64887", "GSM64890", "GSM103554", "GSM103778", "GSM104071", "GSM104083" ], "type": "agent", "id": "GDS2058_2" }, { "dataset_id": "GDS2058", "description": "RTI-018", "sample_id": [ "GSM64888", "GSM64891", "GSM103555", "GSM103779", "GSM104073", "GSM104084" ], "type": "agent", "id": "GDS2058_3" }, { "dataset_id": "GDS2058", "description": "6 h", "sample_id": [ "GSM64886", "GSM64887", "GSM64888", "GSM64892", "GSM103554", "GSM103555", "GSM103556", "GSM103778", "GSM103779" ], "type": "time", "id": "GDS2058_4" }, { "dataset_id": "GDS2058", "description": "24 h", "sample_id": [ "GSM64889", "GSM64890", "GSM64891", "GSM103780", "GSM104071", "GSM104073", "GSM104079", "GSM104083", "GSM104084" ], "type": "time", "id": "GDS2058_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2058", "version": 1.0, "instances": "18", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2058.tab", "compression": "gz" } ], [ [ "GDS2060.tab" ], { "title": "Transcription factor Egr3 expression effect on primary myotubes (MG-430B)", "description": "Analysis of primary myotubes expressing wild-type or inactive truncated Egr3. Transcription factor Egr3 activity is critical for the development of muscle spindles, skeletal muscle stretch receptors that mediate axial and limb proprioception.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1998", "order": "none", "update_date": "Jun 16 2006", "subsets": [ { "dataset_id": "GDS2060", "description": "wild type Egr3", "sample_id": [ "GSM35879", "GSM35881" ], "type": "genotype/variation", "id": "GDS2060_1" }, { "dataset_id": "GDS2060", "description": "truncated Egr3", "sample_id": [ "GSM35877", "GSM35883" ], "type": "genotype/variation", "id": "GDS2060_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2060", "version": 1.0, "instances": "4", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2060.tab", "compression": "gz" } ], [ [ "GDS2061.tab" ], { "title": "Interleukin 2 deficient regulatory T cells expressing transcription factor Foxp3", "description": "Analysis of interleukin 2 (IL-2)-deficient, Foxp3-expressing regulatory T (Treg) cells. Foxp3+ Treg cells mediate dominant immune tolerance to self. Treg cells express IL-2 receptor alpha-chain CD25, but the role of IL-2 has been controversial to date. Results identify a role for IL-2 in Treg cells.", "type": "Expression profiling by array", "pubmed_id": "16227984", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE4179", "order": "none", "update_date": "Jun 20 2006", "subsets": [ { "dataset_id": "GDS2061", "description": "regulatory T cells", "sample_id": [ "GSM44980", "GSM44981", "GSM95590", "GSM95591" ], "type": "cell type", "id": "GDS2061_1" }, { "dataset_id": "GDS2061", "description": "nonregulatory T cells", "sample_id": [ "GSM44982" ], "type": "cell type", "id": "GDS2061_2" }, { "dataset_id": "GDS2061", "description": "control", "sample_id": [ "GSM44980", "GSM44981", "GSM44982", "GSM95590" ], "type": "agent", "id": "GDS2061_3" }, { "dataset_id": "GDS2061", "description": "IL-2", "sample_id": [ "GSM95591" ], "type": "agent", "id": "GDS2061_4" }, { "dataset_id": "GDS2061", "description": "IL-2 null, Foxp3 plus", "sample_id": [ "GSM95590", "GSM95591" ], "type": "genotype/variation", "id": "GDS2061_5" }, { "dataset_id": "GDS2061", "description": "CD25hi, Foxp3 plus", "sample_id": [ "GSM44980" ], "type": "genotype/variation", "id": "GDS2061_6" }, { "dataset_id": "GDS2061", "description": "CD25lo, Foxp3 plus", "sample_id": [ "GSM44981" ], "type": "genotype/variation", "id": "GDS2061_7" }, { "dataset_id": "GDS2061", "description": "CD25plus, Foxp3 minus", "sample_id": [ "GSM44982" ], "type": "genotype/variation", "id": "GDS2061_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2061", "version": 1.0, "instances": "5", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2061.tab", "compression": "gz" } ], [ [ "GDS2063.tab" ], { "title": "MicroRNA miR159a overexpression effect on flower", "description": "Analysis of stage 15 flowers from transgenics overexpressing miRNA miR159a. Most plant miRNAs have perfect or near-perfect complementarity with their targets. However, targets with up to five mismatches exist. Results provide insight into the mechanistic basis of target recognition by plant miRNA.", "type": "Expression profiling by array", "pubmed_id": "15809034", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2078", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2063", "description": "control", "sample_id": [ "GSM37633", "GSM37635", "GSM37636" ], "type": "genotype/variation", "id": "GDS2063_1" }, { "dataset_id": "GDS2063", "description": "miR159a transgenic", "sample_id": [ "GSM37634", "GSM37637", "GSM37638" ], "type": "genotype/variation", "id": "GDS2063_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2063", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2063.tab", "compression": "gz" } ], [ [ "GDS2064.tab" ], { "title": "MicroRNA miR156b and miR164b overexpression effect on floral apex", "description": "Analysis of floral apices of transgenics overexpressing miRNA miR156b or miR164b. Most plant miRNAs have perfect or near-perfect complementarity with their targets. However, targets with up to 5 mismatches exist. Results provide insight into the mechanism of target recognition by plant miRNA.", "type": "Expression profiling by array", "pubmed_id": "15809034", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2079", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2064", "description": "control", "sample_id": [ "GSM37639", "GSM37640" ], "type": "genotype/variation", "id": "GDS2064_1" }, { "dataset_id": "GDS2064", "description": "miR156b transgenic", "sample_id": [ "GSM37641", "GSM37642" ], "type": "genotype/variation", "id": "GDS2064_2" }, { "dataset_id": "GDS2064", "description": "miR164b transgenic", "sample_id": [ "GSM37643", "GSM37644" ], "type": "genotype/variation", "id": "GDS2064_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2064", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2064.tab", "compression": "gz" } ], [ [ "GDS2065.tab" ], { "title": "MicroRNA miR164b and miR172a overexpression effect on vegetative apex", "description": "Analysis of vegetative apices of transgenics overexpressing miRNA miR164b or miR172a. Most plant miRNAs have perfect or near-perfect complementarity with their targets. However, targets with up to 5 mismatches exist. Results provide insight into the mechanism of target recognition by plant miRNA.", "type": "Expression profiling by array", "pubmed_id": "15809034", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2080", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2065", "description": "control", "sample_id": [ "GSM37645", "GSM37646" ], "type": "genotype/variation", "id": "GDS2065_1" }, { "dataset_id": "GDS2065", "description": "miR164b transgenic", "sample_id": [ "GSM37647", "GSM37648" ], "type": "genotype/variation", "id": "GDS2065_2" }, { "dataset_id": "GDS2065", "description": "miR172a transgenic", "sample_id": [ "GSM37649", "GSM37650" ], "type": "genotype/variation", "id": "GDS2065_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2065", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2065.tab", "compression": "gz" } ], [ [ "GDS2066.tab" ], { "title": "MicroRNA miR319a overexpression effect on the leaf", "description": "Analysis of leaves from transgenics overexpressing microRNA miR319a. Most plant miRNAs have perfect or near-perfect complementarity with their targets. However, targets with up to five mismatches exist. Results provide insight into the mechanistic basis of target recognition by plant miRNA.", "type": "Expression profiling by array", "pubmed_id": "15809034", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2081", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2066", "description": "control", "sample_id": [ "GSM37651", "GSM37652" ], "type": "genotype/variation", "id": "GDS2066_1" }, { "dataset_id": "GDS2066", "description": "miR319a transgenic", "sample_id": [ "GSM37653", "GSM37654" ], "type": "genotype/variation", "id": "GDS2066_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2066", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2066.tab", "compression": "gz" } ], [ [ "GDS2069.tab" ], { "title": "Kruppel-like transcription factor 7 knockout effect on the olfactory epithelium", "description": "Analysis of olfactory epithelia from Kruppel-like transcription factor 7 (KLF7) knockout mutants. Kruppel-like transcription factors are important regulators of cell proliferation and differentiation in several organ systems. KLF7 knockout leads to impaired axon projection in the olfactory system.", "type": "Expression profiling by array", "pubmed_id": "17123745", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3595", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2069", "description": "wild type", "sample_id": [ "GSM82891", "GSM82892", "GSM82893" ], "type": "genotype/variation", "id": "GDS2069_1" }, { "dataset_id": "GDS2069", "description": "KLF7 knockout", "sample_id": [ "GSM83043", "GSM83045", "GSM83046" ], "type": "genotype/variation", "id": "GDS2069_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2069", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2069.tab", "compression": "gz" } ], [ [ "GDS2070.tab" ], { "title": "Angiotensin II type 1 receptor antagonist effect on brain microvessels of hypertensive animals", "description": "Analysis of brain microvessels from hypertensive SHR males treated with candesartan, an angiotensin II type 1 receptor (AT1) antagonist, daily for 4 weeks. Blockade of angiotensin II AT1 receptors in cerebral microvessels protects against brain ischemia and inflammation.", "type": "Expression profiling by array", "pubmed_id": "16601219", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2739", "order": "none", "update_date": "Mar 20 2007", "subsets": [ { "dataset_id": "GDS2070", "description": "normotensive", "sample_id": [ "GSM60118", "GSM60119", "GSM60120", "GSM60121" ], "type": "disease state", "id": "GDS2070_1" }, { "dataset_id": "GDS2070", "description": "hypertensive", "sample_id": [ "GSM60122", "GSM60123", "GSM60124", "GSM60125", "GSM60126" ], "type": "disease state", "id": "GDS2070_2" }, { "dataset_id": "GDS2070", "description": "control", "sample_id": [ "GSM60118", "GSM60119", "GSM60122", "GSM60123", "GSM60124" ], "type": "agent", "id": "GDS2070_3" }, { "dataset_id": "GDS2070", "description": "candesartan", "sample_id": [ "GSM60120", "GSM60121", "GSM60125", "GSM60126" ], "type": "agent", "id": "GDS2070_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2070", "version": 1.0, "instances": "9", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2070.tab", "compression": "gz" } ], [ [ "GDS2071.tab" ], { "title": "Phenobarbital effect on nuclear receptor DHR96 null mutant", "description": "Analysis of DHR96 null mutant exposed to phenobarbital, a xenobiotic compound. DHR96 is an ortholog of the xenobiotic nuclear receptors pregnane X receptor and constitutive androstane receptor. Results provide insight into the role of DHR96 in mediating xenobiotic responses.", "type": "Expression profiling by array", "pubmed_id": "16814731", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5096", "order": "none", "update_date": "Jun 23 2006", "subsets": [ { "dataset_id": "GDS2071", "description": "control", "sample_id": [ "GSM114985", "GSM114986", "GSM114987", "GSM114988", "GSM114989", "GSM114990" ], "type": "agent", "id": "GDS2071_1" }, { "dataset_id": "GDS2071", "description": "phenobarbital", "sample_id": [ "GSM114991", "GSM114992", "GSM114993", "GSM114994", "GSM114995", "GSM114996" ], "type": "agent", "id": "GDS2071_2" }, { "dataset_id": "GDS2071", "description": "Canton S control", "sample_id": [ "GSM114985", "GSM114986", "GSM114987", "GSM114991", "GSM114992", "GSM114993" ], "type": "genotype/variation", "id": "GDS2071_3" }, { "dataset_id": "GDS2071", "description": "DHR96 null mutant", "sample_id": [ "GSM114988", "GSM114989", "GSM114990", "GSM114994", "GSM114995", "GSM114996" ], "type": "genotype/variation", "id": "GDS2071_4" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2071", "version": 1.0, "instances": "12", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2071.tab", "compression": "gz" } ], [ [ "GDS2072.tab" ], { "title": "Nuclear receptor DHR96 ectopic expression effect on larvae", "description": "Analysis of transgenic larvae overexpressing the nuclear receptor DHR96, an ortholog of the xenobiotic nuclear receptors pregnane X receptor and constitutive androstane receptor. Results provide insight into the role of DHR96 in regulating xenobiotic responses.", "type": "Expression profiling by array", "pubmed_id": "16814731", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5097", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2072", "description": "control", "sample_id": [ "GSM115017", "GSM115020", "GSM115021" ], "type": "protocol", "id": "GDS2072_1" }, { "dataset_id": "GDS2072", "description": "DHR96 overexpression", "sample_id": [ "GSM115022", "GSM115023", "GSM115024" ], "type": "protocol", "id": "GDS2072_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2072", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2072.tab", "compression": "gz" } ], [ [ "GDS2073.tab" ], { "title": "Dietary iron-deficiency effect on jejunum (RAE230A)", "description": "Analysis of jejunum from iron (Fe)-deprived 12-week-old Sprague Dawleys. Results provide insight into the genetic response to Fe deprivation in the jejunum versus the duodenum (characterized earlier) and the role of distal gut segments in increasing Fe absorption in conditions of Fe-deficiency.", "type": "Expression profiling by array", "pubmed_id": "16629162", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2269", "order": "ordered", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2073", "description": "high iron", "sample_id": [ "GSM41983", "GSM41984", "GSM41985" ], "type": "dose", "id": "GDS2073_1" }, { "dataset_id": "GDS2073", "description": "low iron", "sample_id": [ "GSM41986", "GSM41987", "GSM41988" ], "type": "dose", "id": "GDS2073_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2073", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2073.tab", "compression": "gz" } ], [ [ "GDS2074.tab" ], { "title": "Dietary iron-deficiency effect on jejunum (RAE230B)", "description": "Analysis of jejunum from iron (Fe)-deprived 12-week-old Sprague Dawleys. Results provide insight into the genetic response to Fe deprivation in the jejunum versus the duodenum (characterized earlier) and the role of distal gut segments in increasing Fe absorption in conditions of Fe-deficiency.", "type": "Expression profiling by array", "pubmed_id": "16629162", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2269", "order": "ordered", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2074", "description": "high iron", "sample_id": [ "GSM41989", "GSM41990", "GSM41991" ], "type": "dose", "id": "GDS2074_1" }, { "dataset_id": "GDS2074", "description": "low iron", "sample_id": [ "GSM41992", "GSM41993", "GSM41994" ], "type": "dose", "id": "GDS2074_2" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS2074", "version": 1.0, "instances": "6", "variables": 13320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2074.tab", "compression": "gz" } ], [ [ "GDS2077.tab" ], { "title": "Estren effect on the uterus: time course", "description": "Analysis of uteri from adult ovariectomized animals treated with estren, estradiol, dihydrotestosterone, or 19-nortestosterone for 2 or 24 hours. Estren is a synthetic steroid. Results provide insight into the molecular and physiological effects of estren on the uterus.", "type": "Expression profiling by array", "pubmed_id": "16469803", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log10 ratio", "reference_series": "GSE4615", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2077", "description": "estradiol", "sample_id": [ "GSM102717", "GSM102718", "GSM102719", "GSM102720" ], "type": "agent", "id": "GDS2077_1" }, { "dataset_id": "GDS2077", "description": "dihydrotestosterone", "sample_id": [ "GSM103292", "GSM103293" ], "type": "agent", "id": "GDS2077_2" }, { "dataset_id": "GDS2077", "description": "19-nortestosterone", "sample_id": [ "GSM103315", "GSM103324" ], "type": "agent", "id": "GDS2077_3" }, { "dataset_id": "GDS2077", "description": "estren", "sample_id": [ "GSM102721", "GSM102722", "GSM103111", "GSM103286" ], "type": "agent", "id": "GDS2077_4" }, { "dataset_id": "GDS2077", "description": "2 h", "sample_id": [ "GSM102717", "GSM102718", "GSM102721", "GSM102722" ], "type": "time", "id": "GDS2077_5" }, { "dataset_id": "GDS2077", "description": "24 h", "sample_id": [ "GSM102719", "GSM102720", "GSM103111", "GSM103286", "GSM103292", "GSM103293", "GSM103315", "GSM103324" ], "type": "time", "id": "GDS2077_6" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS2077", "version": 1.0, "instances": "12", "variables": 19521, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2077.tab", "compression": "gz" } ], [ [ "GDS2078.tab" ], { "title": "Estren effect on the estrogen receptor alpha null uterus: time course", "description": "Analysis of uteri from adult ovariectomized estrogen receptor alpha (ERalpha) null mutants treated with estren, estradiol, or 19-nortestosterone for 2 or 24 hours. Estren is a synthetic steroid. Results provide insight into the dependence of gene responses induced by estren in the uterus on ERalpha.", "type": "Expression profiling by array", "pubmed_id": "16469803", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log10 ratio", "reference_series": "GSE4615", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2078", "description": "estradiol", "sample_id": [ "GSM103112", "GSM103289", "GSM103290", "GSM103327" ], "type": "agent", "id": "GDS2078_1" }, { "dataset_id": "GDS2078", "description": "19-nortestosterone", "sample_id": [ "GSM103325", "GSM103326" ], "type": "agent", "id": "GDS2078_2" }, { "dataset_id": "GDS2078", "description": "estren", "sample_id": [ "GSM103113", "GSM103114", "GSM103287", "GSM103288" ], "type": "agent", "id": "GDS2078_3" }, { "dataset_id": "GDS2078", "description": "2 h", "sample_id": [ "GSM103112", "GSM103113", "GSM103114", "GSM103327" ], "type": "time", "id": "GDS2078_4" }, { "dataset_id": "GDS2078", "description": "24 h", "sample_id": [ "GSM103287", "GSM103288", "GSM103289", "GSM103290", "GSM103325", "GSM103326" ], "type": "time", "id": "GDS2078_5" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS2078", "version": 1.0, "instances": "10", "variables": 19521, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2078.tab", "compression": "gz" } ], [ [ "GDS2079.tab" ], { "title": "RNA-binding protein Nab3 inactivation", "description": "Analyis of nab3 temperature sensitive mutants subjected to the non-permissive temperature of 37 degrees C to inactivate Nab3. Nab3 is an RNA-binding protein involved in the transcription termination of nonpolyadenylated transcripts.", "type": "Expression profiling by array", "pubmed_id": "16973436", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4657", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2079", "description": "wild type", "sample_id": [ "GSM105145", "GSM105146" ], "type": "genotype/variation", "id": "GDS2079_1" }, { "dataset_id": "GDS2079", "description": "nab3 temperature sensitive", "sample_id": [ "GSM105139", "GSM105143" ], "type": "genotype/variation", "id": "GDS2079_2" }, { "dataset_id": "GDS2079", "description": "25 C", "sample_id": [ "GSM105143", "GSM105145" ], "type": "temperature", "id": "GDS2079_3" }, { "dataset_id": "GDS2079", "description": "37 C", "sample_id": [ "GSM105139", "GSM105146" ], "type": "temperature", "id": "GDS2079_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2079", "version": 1.0, "instances": "4", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2079.tab", "compression": "gz" } ], [ [ "GDS2080.tab" ], { "title": "Early and late onset severe preeclampsia: placenta", "description": "Analysis of placentas from patients with early or late onset severe preeclampsia. Preeclampsia is a serious pregnancy-associated disorder characterized by hypertension and proteinuria. Results provide insight into the pathogenesis of preeclampsia.", "type": "Expression profiling by array", "pubmed_id": "16860862", "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "log10 ratio", "reference_series": "GSE4707", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2080", "description": "normal", "sample_id": [ "GSM106249", "GSM106250", "GSM106274", "GSM106275" ], "type": "disease state", "id": "GDS2080_1" }, { "dataset_id": "GDS2080", "description": "early onset preeclampsia", "sample_id": [ "GSM106276", "GSM106277", "GSM106278", "GSM106279", "GSM106280" ], "type": "disease state", "id": "GDS2080_2" }, { "dataset_id": "GDS2080", "description": "late onset preeclampsia", "sample_id": [ "GSM106281", "GSM106282", "GSM106283", "GSM106284", "GSM106285" ], "type": "disease state", "id": "GDS2080_3" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS2080", "version": 1.0, "instances": "14", "variables": 30019, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2080.tab", "compression": "gz" } ], [ [ "GDS2081.tab" ], { "title": "Jun kinase inhibition effect on keratinocytes: time course", "description": "Analysis of keratinocytes at various time points up to 48 hours following treatment with the Jun kinase (JNK) inhibitor SP600125. SP600125 is a reversible ATP-competitive inhibitor specific for the three isoforms of JNK. Results identify JNK-regulated genes in epidermal keratinocytes.", "type": "Expression profiling by array", "pubmed_id": "16648634", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4828", "order": "none", "update_date": "Jun 27 2006", "subsets": [ { "dataset_id": "GDS2081", "description": "untreated", "sample_id": [ "GSM108913", "GSM108915", "GSM108917", "GSM108919" ], "type": "agent", "id": "GDS2081_1" }, { "dataset_id": "GDS2081", "description": "JNK inhibitor", "sample_id": [ "GSM108914", "GSM108916", "GSM108918", "GSM108920" ], "type": "agent", "id": "GDS2081_2" }, { "dataset_id": "GDS2081", "description": "1 h", "sample_id": [ "GSM108913", "GSM108914" ], "type": "time", "id": "GDS2081_3" }, { "dataset_id": "GDS2081", "description": "4 h", "sample_id": [ "GSM108915", "GSM108916" ], "type": "time", "id": "GDS2081_4" }, { "dataset_id": "GDS2081", "description": "24 h", "sample_id": [ "GSM108917", "GSM108918" ], "type": "time", "id": "GDS2081_5" }, { "dataset_id": "GDS2081", "description": "48 h", "sample_id": [ "GSM108919", "GSM108920" ], "type": "time", "id": "GDS2081_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2081", "version": 1.0, "instances": "8", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2081.tab", "compression": "gz" } ], [ [ "GDS2082.tab" ], { "title": "Age effect on the hippocampus", "description": "Analysis of hippocampi of 2-month-old young and 15-month-old middle-aged animals. The hippocampal formation is one of the brain areas most affected by aging. Results provide insight into molecular changes accompanying the early stages of age-related memory decline.", "type": "Expression profiling by array", "pubmed_id": "15169854", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE5078", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2082", "description": "2 months", "sample_id": [ "GSM114426", "GSM114427", "GSM114428", "GSM114430", "GSM114431", "GSM114433", "GSM114434", "GSM114436", "GSM114437" ], "type": "age", "id": "GDS2082_1" }, { "dataset_id": "GDS2082", "description": "15 months", "sample_id": [ "GSM114391", "GSM114393", "GSM114394", "GSM114396", "GSM114397", "GSM114400", "GSM114402", "GSM114409", "GSM114410", "GSM114412", "GSM114414", "GSM114417", "GSM114424", "GSM114425" ], "type": "age", "id": "GDS2082_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2082", "version": 1.0, "instances": "23", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2082.tab", "compression": "gz" } ], [ [ "GDS2083.tab" ], { "title": "Limb immobilization effect on skeletal muscle", "description": "Analysis of vastus lateralis muscle after knee immobilization for 48 hours. Limbs immobilized due to injury or illness experience significant muscle atrophy within 1 or 2 weeks. Results provide insight into the mechanisms regulating the rapid protein degradation in immobilized skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "16763108", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE5110", "order": "none", "update_date": "Jul 10 2006", "subsets": [ { "dataset_id": "GDS2083", "description": "pre-immobilization", "sample_id": [ "GSM103563", "GSM103564", "GSM103565", "GSM103560", "GSM103559" ], "type": "stress", "id": "GDS2083_1" }, { "dataset_id": "GDS2083", "description": "post-immobilization", "sample_id": [ "GSM104050", "GSM103561", "GSM103562", "GSM103557", "GSM103558" ], "type": "stress", "id": "GDS2083_2" }, { "dataset_id": "GDS2083", "description": "subject 1", "sample_id": [ "GSM104050", "GSM103563" ], "type": "individual", "id": "GDS2083_3" }, { "dataset_id": "GDS2083", "description": "subject 2", "sample_id": [ "GSM103565", "GSM103557" ], "type": "individual", "id": "GDS2083_4" }, { "dataset_id": "GDS2083", "description": "subject 3", "sample_id": [ "GSM103564", "GSM103558" ], "type": "individual", "id": "GDS2083_5" }, { "dataset_id": "GDS2083", "description": "subject 4", "sample_id": [ "GSM103562", "GSM103559" ], "type": "individual", "id": "GDS2083_6" }, { "dataset_id": "GDS2083", "description": "subject 5", "sample_id": [ "GSM103560", "GSM103561" ], "type": "individual", "id": "GDS2083_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2083", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2083.tab", "compression": "gz" } ], [ [ "GDS2084.tab" ], { "title": "Polycystic ovary syndrome: adipose tissue", "description": "Analysis of omental adipose tissues of morbidly obese patients with polycystic ovary syndrome (PCOS). PCOS is a common hormonal disorder among women of reproductive age, and is characterized by hyperandrogenism and chronic anovulation. PCOS is associated with obesity.", "type": "Expression profiling by array", "pubmed_id": "17062763", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE5090", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2084", "description": "control", "sample_id": [ "GSM114841", "GSM114844", "GSM114845", "GSM114849", "GSM114851", "GSM114854", "GSM114855" ], "type": "disease state", "id": "GDS2084_1" }, { "dataset_id": "GDS2084", "description": "polycystic ovary syndrome", "sample_id": [ "GSM114834", "GSM114842", "GSM114843", "GSM114847", "GSM114848", "GSM114850", "GSM114852", "GSM114853" ], "type": "disease state", "id": "GDS2084_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2084", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2084.tab", "compression": "gz" } ], [ [ "GDS2086.tab" ], { "title": "Transcription factor p63 inactivation effect on squamous cells (HG-U133A)", "description": "Analysis of squamous cells following siRNA knockdown of the transcription factor p63, a homolog of the tumor suppressor p53. p63 encodes multiple isoforms that activate or repress transcription, and is critical for the development and maintenance of squamous epithelia.", "type": "Expression profiling by array", "pubmed_id": "16885358", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4975", "order": "none", "update_date": "Jun 27 2006", "subsets": [ { "dataset_id": "GDS2086", "description": "HaCaT", "sample_id": [ "GSM112317", "GSM112318" ], "type": "cell line", "id": "GDS2086_1" }, { "dataset_id": "GDS2086", "description": "SCC-1", "sample_id": [ "GSM112321", "GSM112322" ], "type": "cell line", "id": "GDS2086_2" }, { "dataset_id": "GDS2086", "description": "keratinocyte", "sample_id": [ "GSM112317", "GSM112318" ], "type": "cell type", "id": "GDS2086_3" }, { "dataset_id": "GDS2086", "description": "squamous", "sample_id": [ "GSM112321", "GSM112322" ], "type": "cell type", "id": "GDS2086_4" }, { "dataset_id": "GDS2086", "description": "control", "sample_id": [ "GSM112317", "GSM112321" ], "type": "protocol", "id": "GDS2086_5" }, { "dataset_id": "GDS2086", "description": "p63 knockdown", "sample_id": [ "GSM112318", "GSM112322" ], "type": "protocol", "id": "GDS2086_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2086", "version": 1.0, "instances": "4", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2086.tab", "compression": "gz" } ], [ [ "GDS2087.tab" ], { "title": "Transcription factor p63 inactivation effect on squamous cells (HG-U133B)", "description": "Analysis of squamous cells following siRNA knockdown of the transcription factor p63, a homolog of the tumor suppressor p53. p63 encodes multiple isoforms that activate or repress transcription, and is critical for the development and maintenance of squamous epithelia.", "type": "Expression profiling by array", "pubmed_id": "16885358", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4975", "order": "none", "update_date": "Jun 27 2006", "subsets": [ { "dataset_id": "GDS2087", "description": "HaCaT", "sample_id": [ "GSM112319", "GSM112320" ], "type": "cell line", "id": "GDS2087_1" }, { "dataset_id": "GDS2087", "description": "SCC-1", "sample_id": [ "GSM112323", "GSM112324" ], "type": "cell line", "id": "GDS2087_2" }, { "dataset_id": "GDS2087", "description": "keratinocyte", "sample_id": [ "GSM112319", "GSM112320" ], "type": "cell type", "id": "GDS2087_3" }, { "dataset_id": "GDS2087", "description": "squamous", "sample_id": [ "GSM112323", "GSM112324" ], "type": "cell type", "id": "GDS2087_4" }, { "dataset_id": "GDS2087", "description": "control", "sample_id": [ "GSM112319", "GSM112323" ], "type": "protocol", "id": "GDS2087_5" }, { "dataset_id": "GDS2087", "description": "p63 knockdown", "sample_id": [ "GSM112320", "GSM112324" ], "type": "protocol", "id": "GDS2087_6" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2087", "version": 1.0, "instances": "4", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2087.tab", "compression": "gz" } ], [ [ "GDS2088.tab" ], { "title": "Transcription factor p63 inactivation effect on squamous cells (HG-U133 2.0)", "description": "Analysis of squamous cell lines following siRNA knockdown of the transcription factor p63, a homolog of the tumor suppressor p53. p63 encodes multiple isoforms that activate or repress transcription, and is critical for the development and maintenance of squamous epithelia.", "type": "Expression profiling by array", "pubmed_id": "16885358", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4975", "order": "none", "update_date": "Jun 27 2006", "subsets": [ { "dataset_id": "GDS2088", "description": "HaCaT", "sample_id": [ "GSM112325", "GSM112326" ], "type": "cell line", "id": "GDS2088_1" }, { "dataset_id": "GDS2088", "description": "SCC-6", "sample_id": [ "GSM112329", "GSM112330" ], "type": "cell line", "id": "GDS2088_2" }, { "dataset_id": "GDS2088", "description": "SCC-012", "sample_id": [ "GSM112327", "GSM112328" ], "type": "cell line", "id": "GDS2088_3" }, { "dataset_id": "GDS2088", "description": "keratinocyte", "sample_id": [ "GSM112325", "GSM112326" ], "type": "cell type", "id": "GDS2088_4" }, { "dataset_id": "GDS2088", "description": "squamous", "sample_id": [ "GSM112327", "GSM112328", "GSM112329", "GSM112330" ], "type": "cell type", "id": "GDS2088_5" }, { "dataset_id": "GDS2088", "description": "control", "sample_id": [ "GSM112325", "GSM112327", "GSM112329" ], "type": "protocol", "id": "GDS2088_6" }, { "dataset_id": "GDS2088", "description": "p63 knockdown", "sample_id": [ "GSM112326", "GSM112328", "GSM112330" ], "type": "protocol", "id": "GDS2088_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2088", "version": 1.0, "instances": "6", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2088.tab", "compression": "gz" } ], [ [ "GDS2089.tab" ], { "title": "Skeletal muscle response to weight loss", "description": "Analysis of vastus lateralis muscles of morbidly obese patients before and after gastric bypass surgery. Surgical treatment of severe obesity such as gastric bypass provides the most dramatic reductions in body weight. Results provide insight into the pathogenesis of obesity.", "type": "Expression profiling by array", "pubmed_id": "16849634", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5109", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2089", "description": "pre-gastric bypass", "sample_id": [ "GSM101301", "GSM101303", "GSM101304" ], "type": "protocol", "id": "GDS2089_1" }, { "dataset_id": "GDS2089", "description": "post-gastric bypass", "sample_id": [ "GSM101302", "GSM101299", "GSM101300" ], "type": "protocol", "id": "GDS2089_2" }, { "dataset_id": "GDS2089", "description": "patient 1", "sample_id": [ "GSM101301", "GSM101299" ], "type": "individual", "id": "GDS2089_3" }, { "dataset_id": "GDS2089", "description": "patient 2", "sample_id": [ "GSM101303", "GSM101300" ], "type": "individual", "id": "GDS2089_4" }, { "dataset_id": "GDS2089", "description": "patient 3", "sample_id": [ "GSM101302", "GSM101304" ], "type": "individual", "id": "GDS2089_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2089", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2089.tab", "compression": "gz" } ], [ [ "GDS2090.tab" ], { "title": "Sphingosine 1-phosphate effect on glioblastoma cells", "description": "Analysis of glioblastoma cells treated with sphingosine 1-phosphate (S1P). S1P is a lysophospholipid involved in various cellular processes such as migration, proliferation, and survival. Results provide insight into the effect of S1P on glioblastoma angiogenesis and invasion.", "type": "Expression profiling by array", "pubmed_id": "16901352", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4817", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2090", "description": "epidermal growth factor", "sample_id": [ "GSM108540", "GSM108541", "GSM108542" ], "type": "agent", "id": "GDS2090_1" }, { "dataset_id": "GDS2090", "description": "sphingosine 1-phosphate", "sample_id": [ "GSM108543", "GSM108544", "GSM108545" ], "type": "agent", "id": "GDS2090_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2090", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2090.tab", "compression": "gz" } ], [ [ "GDS2091.tab" ], { "title": "DNA demethylation effect on terminally differentiated cells", "description": "Analysis of chondrocytes, fibroblasts, and osteoblasts treated with the DNA demethylating agent 5-aza-2'-deoxycytidine (5-aza-2dC). DNA methylation contributes to transcriptional silencing. Results identify genes whose expression is inhibited by DNA methylation in terminally differentiated cells.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4768", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2091", "description": "control", "sample_id": [ "GSM106152", "GSM106154", "GSM106156", "GSM107797", "GSM107798", "GSM107799", "GSM107800", "GSM107801", "GSM107802" ], "type": "agent", "id": "GDS2091_1" }, { "dataset_id": "GDS2091", "description": "5-aza-2dC", "sample_id": [ "GSM106151", "GSM106153", "GSM106155", "GSM107794", "GSM107795", "GSM107796", "GSM107803", "GSM107804", "GSM107805" ], "type": "agent", "id": "GDS2091_2" }, { "dataset_id": "GDS2091", "description": "chondrocyte", "sample_id": [ "GSM107800", "GSM107801", "GSM107802", "GSM107803", "GSM107804", "GSM107805" ], "type": "cell type", "id": "GDS2091_3" }, { "dataset_id": "GDS2091", "description": "fibroblast", "sample_id": [ "GSM106151", "GSM106152", "GSM106153", "GSM106154", "GSM106155", "GSM106156" ], "type": "cell type", "id": "GDS2091_4" }, { "dataset_id": "GDS2091", "description": "osteoblast", "sample_id": [ "GSM107794", "GSM107795", "GSM107796", "GSM107797", "GSM107798", "GSM107799" ], "type": "cell type", "id": "GDS2091_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2091", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2091.tab", "compression": "gz" } ], [ [ "GDS2092.tab" ], { "title": "Septic CD4+ splenocytes", "description": "Analysis of CD4+ splenocytes 6 hours after surgically induced sepsis. CD4+ splenocytes either undergo apoptosis or become Th2 polarized within 24 hours of the onset of sepsis.", "type": "Expression profiling by array", "pubmed_id": "16931309", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4479", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2092", "description": "control", "sample_id": [ "GSM100798", "GSM100799", "GSM100800", "GSM100801", "GSM100802" ], "type": "disease state", "id": "GDS2092_1" }, { "dataset_id": "GDS2092", "description": "septic", "sample_id": [ "GSM100793", "GSM100794", "GSM100795", "GSM100796", "GSM100797" ], "type": "disease state", "id": "GDS2092_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2092", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2092.tab", "compression": "gz" } ], [ [ "GDS2093.tab" ], { "title": "Pregnane X receptor agonist effect on the liver (RAE230A)", "description": "Analysis of livers of animals treated with pregnenolone 16alpha-carbonitrile (PCN), a pregnane X receptor (NR1I2) agonist. NR1I2 is a member of the nuclear receptor family of ligand-activated transcription factors, and regulates the transcription of genes encoding xenobiotic metabolizing enzymes.", "type": "Expression profiling by array", "pubmed_id": "16997903", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4959", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2093", "description": "control", "sample_id": [ "GSM111888", "GSM111890", "GSM111891", "GSM111893", "GSM111895" ], "type": "agent", "id": "GDS2093_1" }, { "dataset_id": "GDS2093", "description": "PCN", "sample_id": [ "GSM111897", "GSM111899", "GSM111901", "GSM111903", "GSM111905" ], "type": "agent", "id": "GDS2093_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2093", "version": 1.0, "instances": "10", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2093.tab", "compression": "gz" } ], [ [ "GDS2094.tab" ], { "title": "Pregnane X receptor agonist effect on the liver (RAE230B)", "description": "Analysis of livers of animals treated with pregnenolone 16alpha-carbonitrile (PCN), a pregnane X receptor (NR1I2) agonist. NR1I2 is a member of the nuclear receptor family of ligand-activated transcription factors, and regulates the transcription of genes encoding xenobiotic metabolizing enzymes.", "type": "Expression profiling by array", "pubmed_id": "16997903", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4959", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2094", "description": "control", "sample_id": [ "GSM111889", "GSM111892", "GSM111894", "GSM111896" ], "type": "agent", "id": "GDS2094_1" }, { "dataset_id": "GDS2094", "description": "PCN", "sample_id": [ "GSM111898", "GSM111900", "GSM111902", "GSM111904", "GSM111906" ], "type": "agent", "id": "GDS2094_2" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS2094", "version": 1.0, "instances": "9", "variables": 13320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2094.tab", "compression": "gz" } ], [ [ "GDS2095.tab" ], { "title": "Glucocorticoid receptor activation effect on breast cancer cells: time course (series 1)", "description": "Analysis of breast cancer MCF10A-Myc cells at various time points up to 24 hours following treatment with dexamethasone to activate the glucocorticoid receptor (GR). GR activation is critical in the stress response of virtually all cell types.", "type": "Expression profiling by array", "pubmed_id": "16690749", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4917", "order": "none", "update_date": "Jun 29 2006", "subsets": [ { "dataset_id": "GDS2095", "description": "control", "sample_id": [ "GSM109204", "GSM109206", "GSM109208", "GSM109210" ], "type": "agent", "id": "GDS2095_1" }, { "dataset_id": "GDS2095", "description": "dexamethasone", "sample_id": [ "GSM109205", "GSM109207", "GSM109209", "GSM109211" ], "type": "agent", "id": "GDS2095_2" }, { "dataset_id": "GDS2095", "description": "0.5 h", "sample_id": [ "GSM109204", "GSM109205" ], "type": "time", "id": "GDS2095_3" }, { "dataset_id": "GDS2095", "description": "2 h", "sample_id": [ "GSM109206", "GSM109207" ], "type": "time", "id": "GDS2095_4" }, { "dataset_id": "GDS2095", "description": "4 h", "sample_id": [ "GSM109208", "GSM109209" ], "type": "time", "id": "GDS2095_5" }, { "dataset_id": "GDS2095", "description": "24 h", "sample_id": [ "GSM109210", "GSM109211" ], "type": "time", "id": "GDS2095_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2095", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2095.tab", "compression": "gz" } ], [ [ "GDS2096.tab" ], { "title": "Glucocorticoid receptor activation effect on breast cancer cells: time course (series 2)", "description": "Analysis of breast cancer MCF10A-Myc cells at various time points up to 24 hours following treatment with dexamethasone to activate the glucocorticoid receptor (GR). GR activation is critical in the stress response of virtually all cell types.", "type": "Expression profiling by array", "pubmed_id": "16690749", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4917", "order": "none", "update_date": "Jun 29 2006", "subsets": [ { "dataset_id": "GDS2096", "description": "control", "sample_id": [ "GSM109212", "GSM109214", "GSM109216", "GSM109218" ], "type": "agent", "id": "GDS2096_1" }, { "dataset_id": "GDS2096", "description": "dexamethasone", "sample_id": [ "GSM109213", "GSM109215", "GSM109217", "GSM109219" ], "type": "agent", "id": "GDS2096_2" }, { "dataset_id": "GDS2096", "description": "0.5 h", "sample_id": [ "GSM109212", "GSM109213" ], "type": "time", "id": "GDS2096_3" }, { "dataset_id": "GDS2096", "description": "2 h", "sample_id": [ "GSM109214", "GSM109215" ], "type": "time", "id": "GDS2096_4" }, { "dataset_id": "GDS2096", "description": "4 h", "sample_id": [ "GSM109216", "GSM109217" ], "type": "time", "id": "GDS2096_5" }, { "dataset_id": "GDS2096", "description": "24 h", "sample_id": [ "GSM109218", "GSM109219" ], "type": "time", "id": "GDS2096_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2096", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2096.tab", "compression": "gz" } ], [ [ "GDS2097.tab" ], { "title": "Glucocorticoid receptor activation effect on breast cancer cells: time course (series 3)", "description": "Analysis of breast cancer MCF10A-Myc cells at various time points up to 24 hours following treatment with dexamethasone to activate the glucocorticoid receptor (GR). GR activation is critical in the stress response of virtually all cell types.", "type": "Expression profiling by array", "pubmed_id": "16690749", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4917", "order": "none", "update_date": "Jun 29 2006", "subsets": [ { "dataset_id": "GDS2097", "description": "control", "sample_id": [ "GSM109220", "GSM109222", "GSM109224", "GSM109226" ], "type": "agent", "id": "GDS2097_1" }, { "dataset_id": "GDS2097", "description": "dexamethasone", "sample_id": [ "GSM109221", "GSM109223", "GSM109225", "GSM109227" ], "type": "agent", "id": "GDS2097_2" }, { "dataset_id": "GDS2097", "description": "0.5 h", "sample_id": [ "GSM109220", "GSM109221" ], "type": "time", "id": "GDS2097_3" }, { "dataset_id": "GDS2097", "description": "2 h", "sample_id": [ "GSM109222", "GSM109223" ], "type": "time", "id": "GDS2097_4" }, { "dataset_id": "GDS2097", "description": "4 h", "sample_id": [ "GSM109224", "GSM109225" ], "type": "time", "id": "GDS2097_5" }, { "dataset_id": "GDS2097", "description": "24 h", "sample_id": [ "GSM109226", "GSM109227" ], "type": "time", "id": "GDS2097_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2097", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2097.tab", "compression": "gz" } ], [ [ "GDS2098.tab" ], { "title": "Testis development", "description": "Expression profiling of normal whole testes at various stages of development from gestation day 11 to postnatal day 2.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4818", "order": "ordered", "update_date": "Jun 29 2006", "subsets": [ { "dataset_id": "GDS2098", "description": "gestation d 11", "sample_id": [ "GSM108562", "GSM108563", "GSM108564", "GSM108565", "GSM108566" ], "type": "time", "id": "GDS2098_1" }, { "dataset_id": "GDS2098", "description": "gestation d 12", "sample_id": [ "GSM108559", "GSM108560", "GSM108561" ], "type": "time", "id": "GDS2098_2" }, { "dataset_id": "GDS2098", "description": "gestation d 14", "sample_id": [ "GSM108556", "GSM108557", "GSM108558" ], "type": "time", "id": "GDS2098_3" }, { "dataset_id": "GDS2098", "description": "gestation d 16", "sample_id": [ "GSM108553", "GSM108554", "GSM108555" ], "type": "time", "id": "GDS2098_4" }, { "dataset_id": "GDS2098", "description": "gestation d 18", "sample_id": [ "GSM108550", "GSM108551", "GSM108552" ], "type": "time", "id": "GDS2098_5" }, { "dataset_id": "GDS2098", "description": "postnatal d 0.5", "sample_id": [ "GSM108567" ], "type": "time", "id": "GDS2098_6" }, { "dataset_id": "GDS2098", "description": "postnatal d 2", "sample_id": [ "GSM108547", "GSM108548", "GSM108549" ], "type": "time", "id": "GDS2098_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2098", "version": 1.0, "instances": "21", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2098.tab", "compression": "gz" } ], [ [ "GDS2099.tab" ], { "title": "Bladders expressing fluorescent reporters", "description": "Expression profiling of postnatal day 1 transgenic bladders expressing enhanced green (EGFP) or yellow fluorescent proteins (EYFP).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4816", "order": "none", "update_date": "Jun 29 2006", "subsets": [ { "dataset_id": "GDS2099", "description": "wild type", "sample_id": [ "GSM108531", "GSM108532", "GSM108533", "GSM108537", "GSM108538", "GSM108539" ], "type": "genotype/variation", "id": "GDS2099_1" }, { "dataset_id": "GDS2099", "description": "EGFP transgenic", "sample_id": [ "GSM108528", "GSM108529", "GSM108530" ], "type": "genotype/variation", "id": "GDS2099_2" }, { "dataset_id": "GDS2099", "description": "EYFP transgenic", "sample_id": [ "GSM108534", "GSM108535", "GSM108536" ], "type": "genotype/variation", "id": "GDS2099_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2099", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2099.tab", "compression": "gz" } ], [ [ "GDS21.tab" ], { "title": "Carbon sources", "description": "Samples grown in YP media supplemented with 2% weight to volume of glucose, raffinose, galactose, fructose, sucrose or ethanol as carbon source. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL52", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9216", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE18", "order": "none", "update_date": "Mar 31 2003", "subsets": [ { "dataset_id": "GDS21", "description": "raffinose", "sample_id": [ "GSM907" ], "type": "growth protocol", "id": "GDS21_1" }, { "dataset_id": "GDS21", "description": "glucose", "sample_id": [ "GSM990" ], "type": "growth protocol", "id": "GDS21_2" }, { "dataset_id": "GDS21", "description": "galactose", "sample_id": [ "GSM991" ], "type": "growth protocol", "id": "GDS21_3" }, { "dataset_id": "GDS21", "description": "fructose", "sample_id": [ "GSM997" ], "type": "growth protocol", "id": "GDS21_4" }, { "dataset_id": "GDS21", "description": "sucrose", "sample_id": [ "GSM999" ], "type": "growth protocol", "id": "GDS21_5" }, { "dataset_id": "GDS21", "description": "ethanol", "sample_id": [ "GSM1001" ], "type": "growth protocol", "id": "GDS21_6" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS21", "version": 1.0, "instances": "6", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS21.tab", "compression": "gz" } ], [ [ "GDS2100.tab" ], { "title": "Intestinal lymphoid tissues infected with Yersinia enterocolitica: time course", "description": "Analysis of Peyer's patches (PPs) and mesenteric lymph nodes (MLNs) infected with enteric pathogen Yersinia enterocolitica. PP and MLN removed from animals at various time points up to 7 days post oral infection. Results provide insight into the host response to pathogens within the PPs and MLNs.", "type": "Expression profiling by array", "pubmed_id": "16717182", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE4764", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2100", "description": "uninfected", "sample_id": [ "GSM107566", "GSM107568", "GSM107665" ], "type": "disease state", "id": "GDS2100_1" }, { "dataset_id": "GDS2100", "description": "infected", "sample_id": [ "GSM107569", "GSM107570", "GSM107571", "GSM107572", "GSM107573", "GSM107574", "GSM107575", "GSM107576", "GSM107666", "GSM107667", "GSM107668", "GSM107669" ], "type": "disease state", "id": "GDS2100_2" }, { "dataset_id": "GDS2100", "description": "Peyer's patch", "sample_id": [ "GSM107566", "GSM107568", "GSM107569", "GSM107570", "GSM107571", "GSM107572", "GSM107573", "GSM107574", "GSM107575", "GSM107576" ], "type": "tissue", "id": "GDS2100_3" }, { "dataset_id": "GDS2100", "description": "mesenteric lymph node", "sample_id": [ "GSM107665", "GSM107666", "GSM107667", "GSM107668", "GSM107669" ], "type": "tissue", "id": "GDS2100_4" }, { "dataset_id": "GDS2100", "description": "control", "sample_id": [ "GSM107566", "GSM107568", "GSM107665" ], "type": "time", "id": "GDS2100_5" }, { "dataset_id": "GDS2100", "description": "0.5 d", "sample_id": [ "GSM107570", "GSM107666", "GSM107569" ], "type": "time", "id": "GDS2100_6" }, { "dataset_id": "GDS2100", "description": "2 d", "sample_id": [ "GSM107571", "GSM107572", "GSM107667" ], "type": "time", "id": "GDS2100_7" }, { "dataset_id": "GDS2100", "description": "4 d", "sample_id": [ "GSM107573", "GSM107574", "GSM107668" ], "type": "time", "id": "GDS2100_8" }, { "dataset_id": "GDS2100", "description": "7 d", "sample_id": [ "GSM107575", "GSM107576", "GSM107669" ], "type": "time", "id": "GDS2100_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2100", "version": 1.0, "instances": "15", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2100.tab", "compression": "gz" } ], [ [ "GDS2101.tab" ], { "title": "Chitin oligomer chitooctaose effect on seedlings", "description": "Analysis of 14-day-old Col-0 seedlings treated with 1 uM chitooctaose for 3 minutes. Chitooctaose, a chitin oligomer, is released by plant enzymes from the cell wall of many plant fungal pathogens. Results provide insight into the plant defense response to fungal elicitors.", "type": "Expression profiling by array", "pubmed_id": "17722694", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4746", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2101", "description": "control", "sample_id": [ "GSM107437", "GSM107438", "GSM107439" ], "type": "agent", "id": "GDS2101_1" }, { "dataset_id": "GDS2101", "description": "chitooctaose", "sample_id": [ "GSM107440", "GSM107441", "GSM107442" ], "type": "agent", "id": "GDS2101_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2101", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2101.tab", "compression": "gz" } ], [ [ "GDS2102.tab" ], { "title": "Pre-mRNA splicing factor sta1-1 mutant seedlings", "description": "Analysis of sta1-1 seedlings mutant for the pre-mRNA splicing factor STABILIZED1. sta1-1 mutant identified in a screen for mutants with enhanced stability of the normally unstable luciferase transcript. Results identify endogenous genes with enhanced transcript stability in the sta1-1 mutant.", "type": "Expression profiling by array", "pubmed_id": "16751345", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE4662", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2102", "description": "wild type", "sample_id": [ "GSM105203", "GSM105204", "GSM107670", "GSM107711", "GSM107712" ], "type": "genotype/variation", "id": "GDS2102_1" }, { "dataset_id": "GDS2102", "description": "sta1-1 mutant", "sample_id": [ "GSM105205", "GSM105206" ], "type": "genotype/variation", "id": "GDS2102_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2102", "version": 1.0, "instances": "7", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2102.tab", "compression": "gz" } ], [ [ "GDS2103.tab" ], { "title": "Helicobacter-induced gastric cancer model", "description": "Analysis of cancerous stomach tissues of human gastrin overexpressing transgenic animals 6 months following infection with Helicobacter felis. Gastrin overexpression and H. felis infection synergistically accelerate gastric cancer in this model. Results identify gastric cancer-specific genes.", "type": "Expression profiling by array", "pubmed_id": "17270017", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE4651", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2103", "description": "non-transgenic control", "sample_id": [ "GSM102061", "GSM102062" ], "type": "genotype/variation", "id": "GDS2103_1" }, { "dataset_id": "GDS2103", "description": "gastrin transgenic", "sample_id": [ "GSM102058", "GSM102059", "GSM102060" ], "type": "genotype/variation", "id": "GDS2103_2" }, { "dataset_id": "GDS2103", "description": "uninfected control", "sample_id": [ "GSM102060", "GSM102062" ], "type": "infection", "id": "GDS2103_3" }, { "dataset_id": "GDS2103", "description": "H. felis", "sample_id": [ "GSM102058", "GSM102059", "GSM102061" ], "type": "infection", "id": "GDS2103_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2103", "version": 1.0, "instances": "5", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2103.tab", "compression": "gz" } ], [ [ "GDS2104.tab" ], { "title": "Prostaglandin J2 effect on neuroblastoma cell line: time course", "description": "Analysis of neuroblastoma SK-N-SH cells at various time points up to 24 hours following treatment with prostaglandin J2 (PGJ2), a neurotoxic product of inflammation. Results provide insight into mechanisms of PGJ2-induced accumulation/aggregation of ubiquitinated proteins and to neuronal cell death.", "type": "Expression profiling by array", "pubmed_id": "16737963", "platform": "GPL3504", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "19141", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE4329", "order": "ordered", "update_date": "Mar 12 2007", "subsets": [ { "dataset_id": "GDS2104", "description": "4 h", "sample_id": [ "GSM98754", "GSM98763" ], "type": "time", "id": "GDS2104_1" }, { "dataset_id": "GDS2104", "description": "8 h", "sample_id": [ "GSM98762", "GSM98765" ], "type": "time", "id": "GDS2104_2" }, { "dataset_id": "GDS2104", "description": "16 h", "sample_id": [ "GSM98760", "GSM98764" ], "type": "time", "id": "GDS2104_3" }, { "dataset_id": "GDS2104", "description": "24 h", "sample_id": [ "GSM98758", "GSM98759" ], "type": "time", "id": "GDS2104_4" } ], "taxid": "9606", "genes": 17119, "aggregation_function": "mean", "name": "GDS2104", "version": 1.0, "instances": "8", "variables": 17121, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2104.tab", "compression": "gz" } ], [ [ "GDS2106.tab" ], { "title": "Lymphoblastoid cell lines from various CEPH pedigrees", "description": "Analysis of lymphoblastoid cell lines of 57 unrelated CEPH individuals from the International HapMap Project. Results used to find association between the expression phenotypes and SNP markers across the genome genotyped on the 57 individuals that belong to various CEPH pedigrees.", "type": "Expression profiling by array", "pubmed_id": "16251966", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "100", "value_type": "count", "reference_series": "GSE2552", "order": "none", "update_date": "Sep 01 2006", "subsets": [ { "dataset_id": "GDS2106", "description": "CEPH pedigree 1334", "sample_id": [ "GSM25548", "GSM25549", "GSM25550", "GSM25551", "GSM25570", "GSM25571" ], "type": "genotype/variation", "id": "GDS2106_1" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1340", "sample_id": [ "GSM25358", "GSM25359", "GSM25360", "GSM25361", "GSM25377", "GSM25378", "GSM25401", "GSM25402" ], "type": "genotype/variation", "id": "GDS2106_2" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1341", "sample_id": [ "GSM25349", "GSM25350", "GSM25356", "GSM25357", "GSM25385", "GSM25386", "GSM25399", "GSM25400" ], "type": "genotype/variation", "id": "GDS2106_3" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1344", "sample_id": [ "GSM48659", "GSM48660" ], "type": "genotype/variation", "id": "GDS2106_4" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1345", "sample_id": [ "GSM25409", "GSM25410", "GSM25426", "GSM25427" ], "type": "genotype/variation", "id": "GDS2106_5" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1346", "sample_id": [ "GSM25540", "GSM25541", "GSM25542", "GSM25543" ], "type": "genotype/variation", "id": "GDS2106_6" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1347", "sample_id": [ "GSM25479", "GSM25480", "GSM25481", "GSM25482" ], "type": "genotype/variation", "id": "GDS2106_7" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1349", "sample_id": [ "GSM48654" ], "type": "genotype/variation", "id": "GDS2106_8" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1350", "sample_id": [ "GSM48650", "GSM48651", "GSM48652", "GSM48653" ], "type": "genotype/variation", "id": "GDS2106_9" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1358", "sample_id": [ "GSM48662", "GSM48663" ], "type": "genotype/variation", "id": "GDS2106_10" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1362", "sample_id": [ "GSM25524", "GSM25525", "GSM25526", "GSM25527", "GSM25528", "GSM25529", "GSM25530", "GSM25531" ], "type": "genotype/variation", "id": "GDS2106_11" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1375", "sample_id": [ "GSM48661" ], "type": "genotype/variation", "id": "GDS2106_12" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1408", "sample_id": [ "GSM25561", "GSM25562", "GSM25563", "GSM25564", "GSM25565", "GSM25566", "GSM25568", "GSM25569" ], "type": "genotype/variation", "id": "GDS2106_13" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1416", "sample_id": [ "GSM25552", "GSM25553", "GSM25578", "GSM25579", "GSM25580", "GSM25581" ], "type": "genotype/variation", "id": "GDS2106_14" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1420", "sample_id": [ "GSM48655", "GSM48656", "GSM48657", "GSM48658" ], "type": "genotype/variation", "id": "GDS2106_15" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1444", "sample_id": [ "GSM25624", "GSM25625", "GSM25626", "GSM25627" ], "type": "genotype/variation", "id": "GDS2106_16" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1447", "sample_id": [ "GSM25628", "GSM25629", "GSM25630", "GSM25631", "GSM25632", "GSM25633", "GSM25634", "GSM25635" ], "type": "genotype/variation", "id": "GDS2106_17" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1454", "sample_id": [ "GSM25656", "GSM25657", "GSM25658", "GSM25659", "GSM25660", "GSM25661", "GSM25662", "GSM25663" ], "type": "genotype/variation", "id": "GDS2106_18" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1459", "sample_id": [ "GSM25680", "GSM25681", "GSM25682", "GSM25683", "GSM25684", "GSM25685", "GSM25686", "GSM25687" ], "type": "genotype/variation", "id": "GDS2106_19" }, { "dataset_id": "GDS2106", "description": "CEPH pedigree 1463", "sample_id": [ "GSM48664", "GSM48665" ], "type": "genotype/variation", "id": "GDS2106_20" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2106", "version": 1.0, "instances": "100", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2106.tab", "compression": "gz" } ], [ [ "GDS2107.tab" ], { "title": "Long-term ethanol consumption effect on pancreas", "description": "Analysis of pancreas from Wistar males fed the ethanol containing Lieber-DeCarli diet for 8 weeks. Long-term ethanol consumption sensitizes the pancreas to subsequent insults. Results provide insight into the mechanisms underlying the ethanol-mediated sensitization of the pancreas to injury.", "type": "Expression profiling by array", "pubmed_id": "16804415", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3311", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2107", "description": "control", "sample_id": [ "GSM74493", "GSM74494", "GSM74495" ], "type": "agent", "id": "GDS2107_1" }, { "dataset_id": "GDS2107", "description": "ethanol", "sample_id": [ "GSM74496", "GSM74497", "GSM74498" ], "type": "agent", "id": "GDS2107_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2107", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2107.tab", "compression": "gz" } ], [ [ "GDS2109.tab" ], { "title": "STN7 and STN8 protein kinase mutations effect on chloroplast gene expression", "description": "Analysis of protein kinase STN7 and STN8 mutants acclimated to fluctuating light using an array of nuclear chloroplast genes. The kinases regulate the distribution of absorbed solar energy between photosystems I and II. Results provide insight into the role of each in photosynthetic acclimation.", "type": "Expression profiling by array", "pubmed_id": [ "15656970", "16237446" ], "platform": "GPL513", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "3439", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE5254", "order": "none", "update_date": "Oct 24 2006", "subsets": [ { "dataset_id": "GDS2109", "description": "wild type", "sample_id": [ "GSM50847", "GSM50848", "GSM50849", "GSM50850", "GSM50851", "GSM50852" ], "type": "genotype/variation", "id": "GDS2109_1" }, { "dataset_id": "GDS2109", "description": "stn7 mutant", "sample_id": [ "GSM50853", "GSM50854", "GSM50855", "GSM50856", "GSM50857", "GSM50858" ], "type": "genotype/variation", "id": "GDS2109_2" }, { "dataset_id": "GDS2109", "description": "stn8 mutant", "sample_id": [ "GSM50865", "GSM50866", "GSM50867", "GSM50868", "GSM50869", "GSM50870" ], "type": "genotype/variation", "id": "GDS2109_3" }, { "dataset_id": "GDS2109", "description": "stn7stn8 double mutant", "sample_id": [ "GSM50877", "GSM50878", "GSM50879", "GSM50880", "GSM50881", "GSM50882" ], "type": "genotype/variation", "id": "GDS2109_4" } ], "taxid": "3702", "genes": 2993, "aggregation_function": "mean", "name": "GDS2109", "version": 1.0, "instances": "24", "variables": 2995, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2109.tab", "compression": "gz" } ], [ [ "GDS2112.tab" ], { "title": "Spermatogonial stem cell self-renewal: time course", "description": "Analysis of spermatogonial stem cells (SSCs) at various time points following withdrawal and replacement of glial cell line-derived neurotrophic factor (GDNF) and GDNF-family receptor alpha-1 (GFRalpha1). Results provide insight into the mechanisms of GDNF-supported in vitro self-renewal of SSCs.", "type": "Expression profiling by array", "pubmed_id": "16740658", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE4799", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS2112", "description": "GDNF, GFRalpha1 pre-withdrawal", "sample_id": [ "GSM108310", "GSM108311", "GSM108312" ], "type": "protocol", "id": "GDS2112_1" }, { "dataset_id": "GDS2112", "description": "GDNF, GFRalpha1 withdrawal", "sample_id": [ "GSM108313", "GSM108314", "GSM108315" ], "type": "protocol", "id": "GDS2112_2" }, { "dataset_id": "GDS2112", "description": "GDNF, GFRalpha1 replacement", "sample_id": [ "GSM108316", "GSM108317", "GSM108318", "GSM108319", "GSM108320", "GSM108321", "GSM108322", "GSM108323", "GSM108324" ], "type": "protocol", "id": "GDS2112_3" }, { "dataset_id": "GDS2112", "description": "control", "sample_id": [ "GSM108310", "GSM108311", "GSM108312" ], "type": "time", "id": "GDS2112_4" }, { "dataset_id": "GDS2112", "description": "2 h", "sample_id": [ "GSM108316", "GSM108317", "GSM108318" ], "type": "time", "id": "GDS2112_5" }, { "dataset_id": "GDS2112", "description": "4 h", "sample_id": [ "GSM108319", "GSM108320", "GSM108321" ], "type": "time", "id": "GDS2112_6" }, { "dataset_id": "GDS2112", "description": "8 h", "sample_id": [ "GSM108322", "GSM108323", "GSM108324" ], "type": "time", "id": "GDS2112_7" }, { "dataset_id": "GDS2112", "description": "18 h", "sample_id": [ "GSM108313", "GSM108314", "GSM108315" ], "type": "time", "id": "GDS2112_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2112", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2112.tab", "compression": "gz" } ], [ [ "GDS2113.tab" ], { "title": "Pheochromocytomas of various genetic origins", "description": "Analysis of 76 adrenal and extra-adrenal pheochromocytomas. These neural crest-derived tumors of uniform phenotype arise from inherited or sporadic mutations in at least six independent genes. Results provide insight into the molecular pathogenesis of pheochromocytomas.", "type": "Expression profiling by array", "pubmed_id": "16103922", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "75", "value_type": "count", "reference_series": "GSE2841", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2113", "description": "adrenal pheochromocytoma", "sample_id": [ "GSM62310", "GSM62311", "GSM62317", "GSM62321", "GSM62258", "GSM62294", "GSM62322", "GSM62305", "GSM62306", "GSM62318", "GSM62281", "GSM62248", "GSM62256", "GSM62259", "GSM62267", "GSM62280", "GSM62284", "GSM62289", "GSM62307", "GSM62316", "GSM62254", "GSM62292", "GSM62250", "GSM62252", "GSM62255", "GSM62257", "GSM62260", "GSM62261", "GSM62262", "GSM62264", "GSM62268", "GSM62269", "GSM62271", "GSM62272", "GSM62273", "GSM62274", "GSM62275", "GSM62276", "GSM62277", "GSM62279", "GSM62282", "GSM62283", "GSM62286", "GSM62287", "GSM62288", "GSM62290", "GSM62293", "GSM62301", "GSM62302", "GSM62303", "GSM62304", "GSM62312", "GSM62313", "GSM62314", "GSM62319", "GSM62320", "GSM62253", "GSM62270", "GSM62278", "GSM62297", "GSM62298", "GSM62299" ], "type": "disease state", "id": "GDS2113_1" }, { "dataset_id": "GDS2113", "description": "extra-adrenal pheochromocytoma", "sample_id": [ "GSM62265", "GSM62266", "GSM62296", "GSM62309", "GSM62249", "GSM62251", "GSM62263", "GSM62285", "GSM62315", "GSM62291", "GSM62295", "GSM62300", "GSM62308" ], "type": "disease state", "id": "GDS2113_2" }, { "dataset_id": "GDS2113", "description": "familial", "sample_id": [ "GSM62310", "GSM62311", "GSM62317", "GSM62321", "GSM62258", "GSM62294", "GSM62322", "GSM62265", "GSM62266", "GSM62296", "GSM62305", "GSM62306", "GSM62318", "GSM62281", "GSM62309", "GSM62249", "GSM62251", "GSM62263", "GSM62285", "GSM62315", "GSM62291", "GSM62248", "GSM62256", "GSM62259", "GSM62267", "GSM62280", "GSM62284", "GSM62289", "GSM62307", "GSM62316", "GSM62254", "GSM62292", "GSM62253", "GSM62270", "GSM62278", "GSM62297", "GSM62298", "GSM62299" ], "type": "other", "id": "GDS2113_3" }, { "dataset_id": "GDS2113", "description": "sporadic", "sample_id": [ "GSM62295", "GSM62300", "GSM62308", "GSM62250", "GSM62252", "GSM62255", "GSM62257", "GSM62260", "GSM62261", "GSM62262", "GSM62264", "GSM62268", "GSM62269", "GSM62271", "GSM62272", "GSM62273", "GSM62274", "GSM62275", "GSM62276", "GSM62277", "GSM62279", "GSM62282", "GSM62283", "GSM62286", "GSM62287", "GSM62288", "GSM62290", "GSM62293", "GSM62301", "GSM62302", "GSM62303", "GSM62304", "GSM62312", "GSM62313", "GSM62314", "GSM62319", "GSM62320" ], "type": "other", "id": "GDS2113_4" }, { "dataset_id": "GDS2113", "description": "MEN 2A mutation", "sample_id": [ "GSM62248", "GSM62256", "GSM62259", "GSM62267", "GSM62280", "GSM62284", "GSM62289", "GSM62307", "GSM62316" ], "type": "genotype/variation", "id": "GDS2113_5" }, { "dataset_id": "GDS2113", "description": "NF1 mutation", "sample_id": [ "GSM62254", "GSM62292" ], "type": "genotype/variation", "id": "GDS2113_6" }, { "dataset_id": "GDS2113", "description": "VHL mutation", "sample_id": [ "GSM62253", "GSM62270", "GSM62278", "GSM62297", "GSM62298", "GSM62299" ], "type": "genotype/variation", "id": "GDS2113_7" }, { "dataset_id": "GDS2113", "description": "SDHB mutation", "sample_id": [ "GSM62249", "GSM62251", "GSM62263", "GSM62285", "GSM62315" ], "type": "genotype/variation", "id": "GDS2113_8" }, { "dataset_id": "GDS2113", "description": "SDHD mutation", "sample_id": [ "GSM62291" ], "type": "genotype/variation", "id": "GDS2113_9" }, { "dataset_id": "GDS2113", "description": "unidentified mutation", "sample_id": [ "GSM62310", "GSM62311", "GSM62317", "GSM62321", "GSM62258", "GSM62294", "GSM62322", "GSM62265", "GSM62266", "GSM62296", "GSM62305", "GSM62306", "GSM62318", "GSM62281", "GSM62309", "GSM62295", "GSM62300", "GSM62308", "GSM62250", "GSM62252", "GSM62255", "GSM62257", "GSM62260", "GSM62261", "GSM62262", "GSM62264", "GSM62268", "GSM62269", "GSM62271", "GSM62272", "GSM62273", "GSM62274", "GSM62275", "GSM62276", "GSM62277", "GSM62279", "GSM62282", "GSM62283", "GSM62286", "GSM62287", "GSM62288", "GSM62290", "GSM62293", "GSM62301", "GSM62302", "GSM62303", "GSM62304", "GSM62312", "GSM62313", "GSM62314", "GSM62319", "GSM62320" ], "type": "genotype/variation", "id": "GDS2113_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2113", "version": 1.0, "instances": "75", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2113.tab", "compression": "gz" } ], [ [ "GDS2114.tab" ], { "title": "Auxin response transcription factor ARF6 and ARF8 mutations effect on flower development", "description": "Analysis of mutant flowers heterozygous for arf6 but homozygous for arf8, and mutants double homozygous for both arf6 and arf8. Mutants examined at various stages of development. ARF6 and ARF8 are auxin response factors that coordinate the transition from immature to mature fertile flowers.", "type": "Expression profiling by array", "pubmed_id": "16107481", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2848", "order": "none", "update_date": "Sep 01 2006", "subsets": [ { "dataset_id": "GDS2114", "description": "wild type", "sample_id": [ "GSM62694", "GSM62695", "GSM62696", "GSM62697" ], "type": "genotype/variation", "id": "GDS2114_1" }, { "dataset_id": "GDS2114", "description": "arf6 heterozygous arf8 homozygous", "sample_id": [ "GSM62698", "GSM62699", "GSM62700", "GSM62701" ], "type": "genotype/variation", "id": "GDS2114_2" }, { "dataset_id": "GDS2114", "description": "arf6 arf8 double homozygous", "sample_id": [ "GSM62702", "GSM62703", "GSM62704", "GSM62705" ], "type": "genotype/variation", "id": "GDS2114_3" }, { "dataset_id": "GDS2114", "description": "flower", "sample_id": [ "GSM62694", "GSM62695", "GSM62696", "GSM62698", "GSM62699", "GSM62700", "GSM62702", "GSM62703", "GSM62704" ], "type": "tissue", "id": "GDS2114_4" }, { "dataset_id": "GDS2114", "description": "stem", "sample_id": [ "GSM62697", "GSM62701", "GSM62705" ], "type": "tissue", "id": "GDS2114_5" }, { "dataset_id": "GDS2114", "description": "control", "sample_id": [ "GSM62697", "GSM62701", "GSM62705" ], "type": "development stage", "id": "GDS2114_6" }, { "dataset_id": "GDS2114", "description": "stages 1-10", "sample_id": [ "GSM62694", "GSM62698", "GSM62702" ], "type": "development stage", "id": "GDS2114_7" }, { "dataset_id": "GDS2114", "description": "stages 11-12", "sample_id": [ "GSM62695", "GSM62699", "GSM62703" ], "type": "development stage", "id": "GDS2114_8" }, { "dataset_id": "GDS2114", "description": "stages 13-14", "sample_id": [ "GSM62696", "GSM62700", "GSM62704" ], "type": "development stage", "id": "GDS2114_9" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2114", "version": 1.0, "instances": "12", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2114.tab", "compression": "gz" } ], [ [ "GDS2115.tab" ], { "title": "Developing mammary gland: terminal end buds and ducts", "description": "Comparison of terminal end buds (TEBs) and ducts from 5-week-old mammary glands. TEBs and ducts perform specialized functions for ductal invasion and branching. Results provide insight into the epithelial-stromal crosstalk that drives mammary morphogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "16079154", "17129787", "17039550" ], "platform": "GPL2660", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "18144", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE2988", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS2115", "description": "terminal end bud", "sample_id": [ "GSM65260", "GSM65261", "GSM65267", "GSM65268", "GSM65269", "GSM65270" ], "type": "tissue", "id": "GDS2115_1" }, { "dataset_id": "GDS2115", "description": "duct", "sample_id": [ "GSM65271", "GSM65272", "GSM65273", "GSM65274", "GSM65275", "GSM65276" ], "type": "tissue", "id": "GDS2115_2" } ], "taxid": "10090", "genes": 16107, "aggregation_function": "mean", "name": "GDS2115", "version": 1.0, "instances": "12", "variables": 16109, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2115.tab", "compression": "gz" } ], [ [ "GDS2118.tab" ], { "title": "Myelodysplastic syndromes: CD34+ cells", "description": "Analysis of CD34+ cells from 55 patients with myelodysplastic syndromes (MDSs). MDSs are a heterogeneous group of hematopoietic malignancies, characterized by blood cytopenias, ineffective hematopoiesis, and a hypercellular bone marrow. Results provide insight into the pathophysiology of MDS.", "type": "Expression profiling by array", "pubmed_id": "16527891", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "count", "reference_series": "GSE4619", "order": "none", "update_date": "Dec 13 2006", "subsets": [ { "dataset_id": "GDS2118", "description": "normal", "sample_id": [ "GSM103343", "GSM103344", "GSM103345", "GSM103364", "GSM103365", "GSM103366", "GSM103369", "GSM103370", "GSM103388", "GSM103389", "GSM103390" ], "type": "disease state", "id": "GDS2118_1" }, { "dataset_id": "GDS2118", "description": "refractory anemia", "sample_id": [ "GSM103347", "GSM103349", "GSM103354", "GSM103355", "GSM103357", "GSM103358", "GSM103361", "GSM103363", "GSM103367", "GSM103381", "GSM103382", "GSM103384", "GSM103391", "GSM103394", "GSM103399", "GSM103401", "GSM103404", "GSM103408" ], "type": "disease state", "id": "GDS2118_2" }, { "dataset_id": "GDS2118", "description": "refractory anemia with ringed sideroblasts", "sample_id": [ "GSM103348", "GSM103351", "GSM103356", "GSM103368", "GSM103372", "GSM103375", "GSM103376", "GSM103379", "GSM103385", "GSM103387", "GSM103392", "GSM103393", "GSM103395", "GSM103396", "GSM103398", "GSM103402", "GSM103403", "GSM103405", "GSM103407" ], "type": "disease state", "id": "GDS2118_3" }, { "dataset_id": "GDS2118", "description": "refractory anemia with excess blasts", "sample_id": [ "GSM103346", "GSM103350", "GSM103352", "GSM103353", "GSM103359", "GSM103360", "GSM103383", "GSM103400", "GSM103406", "GSM103362", "GSM103371", "GSM103373", "GSM103374", "GSM103377", "GSM103378", "GSM103380", "GSM103386", "GSM103397" ], "type": "disease state", "id": "GDS2118_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2118", "version": 1.0, "instances": "66", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2118.tab", "compression": "gz" } ], [ [ "GDS2119.tab" ], { "title": "Adjudin effect on the testis: time course", "description": "Analysis of testis from Sprague-Dawleys 8 hours or 4 days after Adjudin treatment. Adjudin targets the Sertoli-germ cell adherens junction and causes germ cell depletion from the seminiferous epithelium. Results provide insight into the mechanisms that regulate junction restructuring in the testis.", "type": "Expression profiling by array", "pubmed_id": "17332525", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5131", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2119", "description": "control", "sample_id": [ "GSM115949", "GSM115950", "GSM115951" ], "type": "agent", "id": "GDS2119_1" }, { "dataset_id": "GDS2119", "description": "Adjudin", "sample_id": [ "GSM115952", "GSM115953", "GSM115954", "GSM115955", "GSM115956" ], "type": "agent", "id": "GDS2119_2" }, { "dataset_id": "GDS2119", "description": "0 h", "sample_id": [ "GSM115949", "GSM115950", "GSM115951" ], "type": "time", "id": "GDS2119_3" }, { "dataset_id": "GDS2119", "description": "8 h", "sample_id": [ "GSM115952", "GSM115953" ], "type": "time", "id": "GDS2119_4" }, { "dataset_id": "GDS2119", "description": "4 days", "sample_id": [ "GSM115954", "GSM115955", "GSM115956" ], "type": "time", "id": "GDS2119_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2119", "version": 1.0, "instances": "8", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2119.tab", "compression": "gz" } ], [ [ "GDS2120.tab" ], { "title": "Dominant negative thyroid hormone receptor overexpression effect on hind limb muscle development", "description": "Analysis of hind limbs of premetamorphic (NF55) and postmetamorphic (NF66) transgenics 2 or 6 weeks following transcriptional induction of a dominant negative thyroid hormone (TH) receptor transgene. Results provide insight into the role of TH in the maintenance of limb muscle during development.", "type": "Expression profiling by array", "pubmed_id": "17234173", "platform": "GPL3936", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log10 ratio", "reference_series": "GSE5249", "order": "none", "update_date": "Mar 12 2007", "subsets": [ { "dataset_id": "GDS2120", "description": "control", "sample_id": [ "GSM118367", "GSM118368", "GSM118369", "GSM118445", "GSM118448", "GSM118449" ], "type": "genotype/variation", "id": "GDS2120_1" }, { "dataset_id": "GDS2120", "description": "dominant negative thyroid hormone receptor", "sample_id": [ "GSM118440", "GSM118441", "GSM118442", "GSM118443", "GSM118444", "GSM118447" ], "type": "genotype/variation", "id": "GDS2120_2" }, { "dataset_id": "GDS2120", "description": "premetamorphic", "sample_id": [ "GSM118367", "GSM118368", "GSM118369", "GSM118440", "GSM118441", "GSM118442", "GSM118443", "GSM118444", "GSM118447" ], "type": "development stage", "id": "GDS2120_3" }, { "dataset_id": "GDS2120", "description": "postmetamorphic", "sample_id": [ "GSM118445", "GSM118448", "GSM118449" ], "type": "development stage", "id": "GDS2120_4" }, { "dataset_id": "GDS2120", "description": "2 wk", "sample_id": [ "GSM118367", "GSM118368", "GSM118369", "GSM118440", "GSM118441", "GSM118442", "GSM118445", "GSM118448", "GSM118449" ], "type": "time", "id": "GDS2120_5" }, { "dataset_id": "GDS2120", "description": "6 wk", "sample_id": [ "GSM118443", "GSM118444", "GSM118447" ], "type": "time", "id": "GDS2120_6" } ], "taxid": "8355", "genes": 20122, "aggregation_function": "mean", "name": "GDS2120", "version": 1.0, "instances": "12", "variables": 20126, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2120.tab", "compression": "gz" } ], [ [ "GDS2123.tab" ], { "title": "Brown fat cell response to PGC-1alpha and PGC-1beta deficiency", "description": "Analysis of brown fat cells lacking PGC-1alpha or both PGC-1alpha and PGC-1beta. PGC-1alpha is required for the thermogenic function of brown fat cells, and PGC-1beta is the closest homolog of PGC-1alpha. Results provide insight into the specific roles of PGC-1alpha and PGC-1beta in brown fat cells.", "type": "Expression profiling by array", "pubmed_id": "16679291", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5042", "order": "none", "update_date": "Mar 08 2007", "subsets": [ { "dataset_id": "GDS2123", "description": "wild type", "sample_id": [ "GSM113409", "GSM113411" ], "type": "genotype/variation", "id": "GDS2123_1" }, { "dataset_id": "GDS2123", "description": "PGC-1alpha knockout", "sample_id": [ "GSM113461", "GSM113462", "GSM113463", "GSM113464" ], "type": "genotype/variation", "id": "GDS2123_2" }, { "dataset_id": "GDS2123", "description": "untreated", "sample_id": [ "GSM113409", "GSM113411" ], "type": "agent", "id": "GDS2123_3" }, { "dataset_id": "GDS2123", "description": "control siRNA", "sample_id": [ "GSM113461", "GSM113462" ], "type": "agent", "id": "GDS2123_4" }, { "dataset_id": "GDS2123", "description": "PGC-1beta siRNA", "sample_id": [ "GSM113463", "GSM113464" ], "type": "agent", "id": "GDS2123_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2123", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2123.tab", "compression": "gz" } ], [ [ "GDS2124.tab" ], { "title": "ERK MAP kinase inactivation during G0/G1 to S phase transition: time course", "description": "Analysis of NIH3T3 cells treated with the ERK inhibitor U0126 before or after the addition of the ERK activator FGF. Cells stimulated with FGF for up to 12 hours. Results identify genes regulated by the ERK pathway during G0/G1 to S phase transition.", "type": "Expression profiling by array", "pubmed_id": [ "16782007", "19160492" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE4739", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2124", "description": "0 h", "sample_id": [ "GSM107391", "GSM107392", "GSM107393" ], "type": "time", "id": "GDS2124_1" }, { "dataset_id": "GDS2124", "description": "1 h", "sample_id": [ "GSM107394", "GSM107395" ], "type": "time", "id": "GDS2124_2" }, { "dataset_id": "GDS2124", "description": "4 h", "sample_id": [ "GSM107396", "GSM107397", "GSM107398", "GSM107399" ], "type": "time", "id": "GDS2124_3" }, { "dataset_id": "GDS2124", "description": "7 h", "sample_id": [ "GSM107400", "GSM107401", "GSM107402", "GSM107403", "GSM107404" ], "type": "time", "id": "GDS2124_4" }, { "dataset_id": "GDS2124", "description": "12 h", "sample_id": [ "GSM107405", "GSM107406", "GSM107407", "GSM107408", "GSM107409" ], "type": "time", "id": "GDS2124_5" }, { "dataset_id": "GDS2124", "description": "control", "sample_id": [ "GSM107391", "GSM107392", "GSM107393" ], "type": "protocol", "id": "GDS2124_6" }, { "dataset_id": "GDS2124", "description": "FGF", "sample_id": [ "GSM107394", "GSM107396", "GSM107397", "GSM107400", "GSM107401", "GSM107405", "GSM107406" ], "type": "protocol", "id": "GDS2124_7" }, { "dataset_id": "GDS2124", "description": "U0126 0.5 h before FGF", "sample_id": [ "GSM107395", "GSM107398", "GSM107399", "GSM107402", "GSM107403", "GSM107407", "GSM107408" ], "type": "protocol", "id": "GDS2124_8" }, { "dataset_id": "GDS2124", "description": "U0126 1 h after FGF", "sample_id": [ "GSM107404" ], "type": "protocol", "id": "GDS2124_9" }, { "dataset_id": "GDS2124", "description": "U0126 7 h after FGF", "sample_id": [ "GSM107409" ], "type": "protocol", "id": "GDS2124_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2124", "version": 1.0, "instances": "19", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2124.tab", "compression": "gz" } ], [ [ "GDS2125.tab" ], { "title": "Methyl-CpG-binding protein 2 binding disruption during neuronal maturation", "description": "Analysis of SH-SY5Y cells undergoing PMA-induced neuronal maturational differentiation after transfection with a MeCP2 decoy to disrupt binding of MeCP2 to endogenous targets. Results provide insight into the pathogenesis of Rett syndrome, a neurodevelopmental disorder caused by mutations in MeCP2.", "type": "Expression profiling by array", "pubmed_id": "16682435", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4600", "order": "none", "update_date": "Mar 12 2007", "subsets": [ { "dataset_id": "GDS2125", "description": "undifferentiated", "sample_id": [ "GSM102825", "GSM102842", "GSM102870" ], "type": "cell type", "id": "GDS2125_1" }, { "dataset_id": "GDS2125", "description": "differentiated", "sample_id": [ "GSM102875", "GSM102876", "GSM102877", "GSM102878", "GSM102879", "GSM102880", "GSM102881", "GSM102882", "GSM102883" ], "type": "cell type", "id": "GDS2125_2" }, { "dataset_id": "GDS2125", "description": "no transfection", "sample_id": [ "GSM102825", "GSM102842", "GSM102870", "GSM102875", "GSM102876", "GSM102877" ], "type": "protocol", "id": "GDS2125_3" }, { "dataset_id": "GDS2125", "description": "control decoy transfection", "sample_id": [ "GSM102881", "GSM102882", "GSM102883" ], "type": "protocol", "id": "GDS2125_4" }, { "dataset_id": "GDS2125", "description": "MeCP2 decoy transfection", "sample_id": [ "GSM102878", "GSM102879", "GSM102880" ], "type": "protocol", "id": "GDS2125_5" }, { "dataset_id": "GDS2125", "description": "untreated", "sample_id": [ "GSM102825", "GSM102842", "GSM102870" ], "type": "agent", "id": "GDS2125_6" }, { "dataset_id": "GDS2125", "description": "PMA", "sample_id": [ "GSM102875", "GSM102876", "GSM102877", "GSM102878", "GSM102879", "GSM102880", "GSM102881", "GSM102882", "GSM102883" ], "type": "agent", "id": "GDS2125_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2125", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2125.tab", "compression": "gz" } ], [ [ "GDS2126.tab" ], { "title": "Rheumatoid arthritis: synovial tissues", "description": "Analysis of synovial tissues from patients with rheumatoid arthritis (RA) and osteoarthritis. RA is a chronic, inflammatory joint disease with pronounced inter-patient heterogeneity. Results provide insight into the pathogenesis of RA.", "type": "Expression profiling by array", "pubmed_id": "20858714", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1919", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2126", "description": "normal donor", "sample_id": [ "GSM34379", "GSM34383", "GSM34385", "GSM34388", "GSM34391" ], "type": "disease state", "id": "GDS2126_1" }, { "dataset_id": "GDS2126", "description": "osteoarthritis", "sample_id": [ "GSM34393", "GSM34394", "GSM34395", "GSM34396", "GSM34397" ], "type": "disease state", "id": "GDS2126_2" }, { "dataset_id": "GDS2126", "description": "rheumatoid arthritis", "sample_id": [ "GSM34398", "GSM34399", "GSM34400", "GSM34401", "GSM34402" ], "type": "disease state", "id": "GDS2126_3" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS2126", "version": 1.0, "instances": "15", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2126.tab", "compression": "gz" } ], [ [ "GDS2132.tab" ], { "title": "Diabetic cardiomyopathy progression model", "description": "Analysis of ventricles of streptozotocin-induced diabetic animals with early diabetic cardiomyopathy (DC) characterized by diastolic dysfunction (DD) or late DC characterized by DD and systolic dysfunction (SD). Results provide insight into mechanisms underlying DD and SD development in diabetes.", "type": "Expression profiling by array", "pubmed_id": "16855217", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE4745", "order": "none", "update_date": "Mar 12 2007", "subsets": [ { "dataset_id": "GDS2132", "description": "3 d", "sample_id": [ "GSM107412", "GSM107413", "GSM107414", "GSM107415", "GSM107416", "GSM107417", "GSM107418", "GSM107419" ], "type": "time", "id": "GDS2132_1" }, { "dataset_id": "GDS2132", "description": "28 d", "sample_id": [ "GSM107420", "GSM107421", "GSM107422", "GSM107423", "GSM107424", "GSM107425", "GSM107426", "GSM107427" ], "type": "time", "id": "GDS2132_2" }, { "dataset_id": "GDS2132", "description": "48 d", "sample_id": [ "GSM107428", "GSM107429", "GSM107430", "GSM107431", "GSM107432", "GSM107433", "GSM107434", "GSM107435" ], "type": "time", "id": "GDS2132_3" }, { "dataset_id": "GDS2132", "description": "control", "sample_id": [ "GSM107412", "GSM107413", "GSM107414", "GSM107415", "GSM107420", "GSM107421", "GSM107422", "GSM107423", "GSM107428", "GSM107429", "GSM107430", "GSM107431" ], "type": "disease state", "id": "GDS2132_4" }, { "dataset_id": "GDS2132", "description": "baseline", "sample_id": [ "GSM107416", "GSM107417", "GSM107418", "GSM107419" ], "type": "disease state", "id": "GDS2132_5" }, { "dataset_id": "GDS2132", "description": "diastolic dysfunction", "sample_id": [ "GSM107424", "GSM107425", "GSM107426", "GSM107427" ], "type": "disease state", "id": "GDS2132_6" }, { "dataset_id": "GDS2132", "description": "systolic and diastolic dysfunction", "sample_id": [ "GSM107432", "GSM107433", "GSM107434", "GSM107435" ], "type": "disease state", "id": "GDS2132_7" }, { "dataset_id": "GDS2132", "description": "control", "sample_id": [ "GSM107412", "GSM107413", "GSM107414", "GSM107415", "GSM107420", "GSM107421", "GSM107422", "GSM107423", "GSM107428", "GSM107429", "GSM107430", "GSM107431" ], "type": "agent", "id": "GDS2132_8" }, { "dataset_id": "GDS2132", "description": "streptozotocin", "sample_id": [ "GSM107416", "GSM107417", "GSM107418", "GSM107419", "GSM107424", "GSM107425", "GSM107426", "GSM107427", "GSM107432", "GSM107433", "GSM107434", "GSM107435" ], "type": "agent", "id": "GDS2132_9" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2132", "version": 1.0, "instances": "24", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2132.tab", "compression": "gz" } ], [ [ "GDS2134.tab" ], { "title": "Alpha-tropomyosin mutant models of familial cardiac hypertrophy", "description": "Analysis of ventricles of mutants with mild ventricular disorganization and limited hypertrophy or with severe hypertrophy and fibrosis. Mutants possess familial cardiac hypertrophy (CH) associated mutations in alpha-tropomyosin. Results provide insight into mechanisms that mediate the onset of CH.", "type": "Expression profiling by array", "pubmed_id": "16882888", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4678", "order": "none", "update_date": "Mar 13 2007", "subsets": [ { "dataset_id": "GDS2134", "description": "normal", "sample_id": [ "GSM105487", "GSM105488", "GSM105489" ], "type": "disease state", "id": "GDS2134_1" }, { "dataset_id": "GDS2134", "description": "limited ventricular hypertrophy", "sample_id": [ "GSM105480", "GSM105481", "GSM105482" ], "type": "disease state", "id": "GDS2134_2" }, { "dataset_id": "GDS2134", "description": "severe ventricular hypertrophy", "sample_id": [ "GSM105483", "GSM105484", "GSM105485", "GSM105486" ], "type": "disease state", "id": "GDS2134_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2134", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2134.tab", "compression": "gz" } ], [ [ "GDS2135.tab" ], { "title": "Prefrontal cortex postnatal development: time course", "description": "Analysis of prefrontal cortex (PFC) of animals at 2 to 10 weeks of age. Although the basic laminar structure of the PFC is established in utero, extensive remodeling continues into adolescence. Results map the overall pattern of changes in cortical gene transcripts during postnatal development.", "type": "Expression profiling by array", "pubmed_id": "17013924", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE4675", "order": "ordered", "update_date": "Mar 13 2007", "subsets": [ { "dataset_id": "GDS2135", "description": "2 wk", "sample_id": [ "GSM105450", "GSM105451", "GSM105452", "GSM105453", "GSM105454", "GSM105455" ], "type": "age", "id": "GDS2135_1" }, { "dataset_id": "GDS2135", "description": "3 wk", "sample_id": [ "GSM105456", "GSM105457", "GSM105458", "GSM105459" ], "type": "age", "id": "GDS2135_2" }, { "dataset_id": "GDS2135", "description": "4 wk", "sample_id": [ "GSM105460", "GSM105461", "GSM105462", "GSM105463" ], "type": "age", "id": "GDS2135_3" }, { "dataset_id": "GDS2135", "description": "5 wk", "sample_id": [ "GSM105464", "GSM105465", "GSM105466", "GSM105467", "GSM105468" ], "type": "age", "id": "GDS2135_4" }, { "dataset_id": "GDS2135", "description": "10 wk", "sample_id": [ "GSM105469", "GSM105470", "GSM105471", "GSM105472" ], "type": "age", "id": "GDS2135_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2135", "version": 1.0, "instances": "23", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2135.tab", "compression": "gz" } ], [ [ "GDS2136.tab" ], { "title": "Necrosis- and ethylene-inducing peptide effect on dicots", "description": "Analysis of dicot seedlings exposed for 30 minutes to necrosis- and ethylene-inducing peptide (Nep1) from fungal plant pathogen Fusarium oxysporum. Nep1 inhibited root and cotyledon growth and triggered cell death. Results provide insight into signaling networks involved in plant responses to Nep1.", "type": "Expression profiling by array", "pubmed_id": "16698904", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4638", "order": "none", "update_date": "Mar 13 2007", "subsets": [ { "dataset_id": "GDS2136", "description": "control", "sample_id": [ "GSM104362", "GSM104363" ], "type": "agent", "id": "GDS2136_1" }, { "dataset_id": "GDS2136", "description": "Nep1", "sample_id": [ "GSM104364", "GSM104365" ], "type": "agent", "id": "GDS2136_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2136", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2136.tab", "compression": "gz" } ], [ [ "GDS2138.tab" ], { "title": "Breast cancer cells resistant to green tea polyphenol epigallocatechin 3-gallate growth inhibition", "description": "Analysis of NF639 breast cancer cells resistant to growth inhibition by green tea polyphenol epigallocatechin 3-gallate (EGCG) after initial EGCG sensitivity. EGCG inhibits growth of NF639 cells by inhibiting Her-2/Neu signaling. Results provide insight into mechanisms underlying EGCG resistance.", "type": "Expression profiling by array", "pubmed_id": "16707458", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4140", "order": "none", "update_date": "Mar 13 2007", "subsets": [ { "dataset_id": "GDS2138", "description": "control", "sample_id": [ "GSM94743", "GSM94746" ], "type": "isolate", "id": "GDS2138_1" }, { "dataset_id": "GDS2138", "description": "EGCG-resistant", "sample_id": [ "GSM94748", "GSM94749" ], "type": "isolate", "id": "GDS2138_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2138", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2138.tab", "compression": "gz" } ], [ [ "GDS2139.tab" ], { "title": "UV irradiation effect on skin inactivated for tyrosine kinase receptor ErbB2: time course", "description": "Analysis of the dorsal skin of animals treated with the tyrosine kinase receptor Erbb2 inhibitor AG825 and subsequently exposed to UV radiation. Skin examined 6 and 12 hours after UV irradiation. Results provide insight into the role of Erbb2 in the response to UV and in UV-induced pathologies.", "type": "Expression profiling by array", "pubmed_id": "17003495", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE4066", "order": "none", "update_date": "Mar 14 2007", "subsets": [ { "dataset_id": "GDS2139", "description": "sham", "sample_id": [ "GSM93177", "GSM93178", "GSM93179", "GSM93180", "GSM93193", "GSM93194", "GSM93195", "GSM93196" ], "type": "stress", "id": "GDS2139_1" }, { "dataset_id": "GDS2139", "description": "UV", "sample_id": [ "GSM93181", "GSM93182", "GSM93183", "GSM93184", "GSM93197", "GSM93198", "GSM93199", "GSM93200", "GSM93189", "GSM93190", "GSM93191", "GSM93192", "GSM93205", "GSM93206", "GSM93207" ], "type": "stress", "id": "GDS2139_2" }, { "dataset_id": "GDS2139", "description": "AG825", "sample_id": [ "GSM93193", "GSM93194", "GSM93195", "GSM93196", "GSM93197", "GSM93198", "GSM93199", "GSM93200", "GSM93205", "GSM93206", "GSM93207" ], "type": "agent", "id": "GDS2139_3" }, { "dataset_id": "GDS2139", "description": "DMSO control", "sample_id": [ "GSM93177", "GSM93178", "GSM93179", "GSM93180", "GSM93181", "GSM93182", "GSM93183", "GSM93184", "GSM93189", "GSM93190", "GSM93191", "GSM93192" ], "type": "agent", "id": "GDS2139_4" }, { "dataset_id": "GDS2139", "description": "6 h", "sample_id": [ "GSM93181", "GSM93182", "GSM93183", "GSM93184", "GSM93197", "GSM93198", "GSM93199", "GSM93200", "GSM93177", "GSM93178", "GSM93179", "GSM93180", "GSM93193", "GSM93194", "GSM93195", "GSM93196" ], "type": "time", "id": "GDS2139_5" }, { "dataset_id": "GDS2139", "description": "24 h", "sample_id": [ "GSM93189", "GSM93190", "GSM93191", "GSM93192", "GSM93205", "GSM93206", "GSM93207" ], "type": "time", "id": "GDS2139_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2139", "version": 1.0, "instances": "23", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2139.tab", "compression": "gz" } ], [ [ "GDS214.tab" ], { "title": "Duchenne muscular dystrophy (MuscleChip)", "description": "Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.", "type": "Expression profiling by array", "pubmed_id": "11121445", "platform": "GPL246", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4653", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE465", "order": "none", "update_date": "Mar 16 2010", "subsets": [ { "dataset_id": "GDS214", "description": "normal", "sample_id": [ "GSM4230", "GSM4231", "GSM4236", "GSM4241" ], "type": "disease state", "id": "GDS214_1" }, { "dataset_id": "GDS214", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM4406", "GSM4407", "GSM4408", "GSM4409", "GSM4410", "GSM4411", "GSM4412", "GSM4413", "GSM4414", "GSM4415", "GSM4416", "GSM4417", "GSM4400", "GSM4405", "GSM4386", "GSM4387", "GSM4388", "GSM4389", "GSM4390", "GSM4391", "GSM4392", "GSM4393", "GSM4394", "GSM4383", "GSM4385", "GSM48537" ], "type": "disease state", "id": "GDS214_2" }, { "dataset_id": "GDS214", "description": "4-13 year", "sample_id": [ "GSM4230", "GSM4231" ], "type": "age", "id": "GDS214_3" }, { "dataset_id": "GDS214", "description": "5-12 year", "sample_id": [ "GSM4236", "GSM4241" ], "type": "age", "id": "GDS214_4" }, { "dataset_id": "GDS214", "description": "5-6 year", "sample_id": [ "GSM4406", "GSM4407", "GSM4408", "GSM4409", "GSM4410", "GSM4411", "GSM4412", "GSM4413", "GSM4414", "GSM4415", "GSM4416", "GSM4417", "GSM4400", "GSM4405" ], "type": "age", "id": "GDS214_5" }, { "dataset_id": "GDS214", "description": "10-12 year", "sample_id": [ "GSM4386", "GSM4387", "GSM4388", "GSM4389", "GSM4390", "GSM4391", "GSM4392", "GSM4393", "GSM4394", "GSM4383", "GSM4385", "GSM48537" ], "type": "age", "id": "GDS214_6" } ], "taxid": "9606", "genes": 3075, "aggregation_function": "mean", "name": "GDS214", "version": 1.0, "instances": "30", "variables": 3078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS214.tab", "compression": "gz" } ], [ [ "GDS2141.tab" ], { "title": "Protein kinase C alpha deficiency effect on small intestine", "description": "Analysis of small intestines of adult animals containing a homozygous null deletion of the gene for protein kinase C alpha (PKCa). PKCa knockouts show an elevated tendency to develop spontaneous intestinal tumors. Results provide insight into the role of the PKCa isoform in colorectal cancer.", "type": "Expression profiling by array", "pubmed_id": "16849539", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3915", "order": "none", "update_date": "Mar 14 2007", "subsets": [ { "dataset_id": "GDS2141", "description": "wild type", "sample_id": [ "GSM89632", "GSM89633" ], "type": "genotype/variation", "id": "GDS2141_1" }, { "dataset_id": "GDS2141", "description": "PKCa knockout", "sample_id": [ "GSM89634", "GSM89635" ], "type": "genotype/variation", "id": "GDS2141_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2141", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2141.tab", "compression": "gz" } ], [ [ "GDS2142.tab" ], { "title": "Cystic fibrosis patients with mild and severe lung disease: nasal respiratory epithelium (HG-U133A)", "description": "Analysis of the nasal respiratory epithelium of cystic fibrosis (CF) patients with mild or severe lung disease. CF patients have identical homozygous deltaF508 CFTR genotypes but exhibit variability in pulmonary disease severity. Results provide insight into the basis of the phenotypic difference.", "type": "Expression profiling by array", "pubmed_id": "16614352", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE2395", "order": "none", "update_date": "Mar 14 2007", "subsets": [ { "dataset_id": "GDS2142", "description": "normal", "sample_id": [ "GSM44578", "GSM44619", "GSM44621", "GSM44624", "GSM44630", "GSM44637", "GSM44638", "GSM44641", "GSM44643", "GSM44651" ], "type": "disease state", "id": "GDS2142_1" }, { "dataset_id": "GDS2142", "description": "mild cystic fibrosis", "sample_id": [ "GSM44633", "GSM44639", "GSM44648", "GSM44653" ], "type": "disease state", "id": "GDS2142_2" }, { "dataset_id": "GDS2142", "description": "severe cystic fibrosis", "sample_id": [ "GSM44634", "GSM44644", "GSM44649", "GSM44654", "GSM44657" ], "type": "disease state", "id": "GDS2142_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2142", "version": 1.0, "instances": "19", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2142.tab", "compression": "gz" } ], [ [ "GDS2143.tab" ], { "title": "Cystic fibrosis patients with mild and severe lung disease: nasal respiratory epithelium (HG-U133B)", "description": "Analysis of the nasal respiratory epithelium of cystic fibrosis (CF) patients with mild or severe lung disease. CF patients have identical homozygous deltaF508 CFTR genotypes but exhibit variability in pulmonary disease severity. Results provide insight into the basis of the phenotypic difference.", "type": "Expression profiling by array", "pubmed_id": "16614352", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2395", "order": "none", "update_date": "Mar 14 2007", "subsets": [ { "dataset_id": "GDS2143", "description": "normal", "sample_id": [ "GSM44622", "GSM44623", "GSM44625", "GSM44626", "GSM44635", "GSM44640", "GSM44645", "GSM44646", "GSM44647", "GSM44650", "GSM44652" ], "type": "disease state", "id": "GDS2143_1" }, { "dataset_id": "GDS2143", "description": "mild cystic fibrosis", "sample_id": [ "GSM44631", "GSM44632", "GSM44636", "GSM44642" ], "type": "disease state", "id": "GDS2143_2" }, { "dataset_id": "GDS2143", "description": "severe cystic fibrosis", "sample_id": [ "GSM44627", "GSM44628", "GSM44629", "GSM44655", "GSM44656" ], "type": "disease state", "id": "GDS2143_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2143", "version": 1.0, "instances": "20", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2143.tab", "compression": "gz" } ], [ [ "GDS2144.tab" ], { "title": "Cochlear nucleus postnatal development", "description": "Analysis of cochlear nucleus (CN) at postnatal days 7 (P7), 14, and 21. Deprivation of auditory nerve input from P7 to P14 results in neuron death in the anteroventral CN. Results provide insight into the molecular basis underlying this critical period of susceptibility to loss of afferent input.", "type": "Expression profiling by array", "pubmed_id": "16261529", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2390", "order": "ordered", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2144", "description": "P7", "sample_id": [ "GSM44850", "GSM44851", "GSM44852" ], "type": "age", "id": "GDS2144_1" }, { "dataset_id": "GDS2144", "description": "P14", "sample_id": [ "GSM44853", "GSM44854" ], "type": "age", "id": "GDS2144_2" }, { "dataset_id": "GDS2144", "description": "P21", "sample_id": [ "GSM44855", "GSM44856", "GSM44857" ], "type": "age", "id": "GDS2144_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2144", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2144.tab", "compression": "gz" } ], [ [ "GDS2145.tab" ], { "title": "Congestive heart failure model", "description": "Analysis of the heart left ventricle 1 or 7 days after ligation of the left anterior descending coronary artery to induce myocardial infarction (MI). Animals subjected to MI had congestive heart failure (CHF) on day 7. Results identify genes involved in the progression to CHF.", "type": "Expression profiling by array", "pubmed_id": "16497176", "platform": "GPL153", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "1185", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1957", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2145", "description": "control", "sample_id": [ "GSM34956", "GSM34962", "GSM34963", "GSM34964", "GSM34965", "GSM34966", "GSM34967", "GSM34983", "GSM34984", "GSM34985", "GSM34986", "GSM34987" ], "type": "disease state", "id": "GDS2145_1" }, { "dataset_id": "GDS2145", "description": "myocardial infarction", "sample_id": [ "GSM34950", "GSM34951", "GSM34952", "GSM34953", "GSM34954", "GSM34955", "GSM34971", "GSM34972", "GSM34973", "GSM34974", "GSM34975", "GSM34976" ], "type": "disease state", "id": "GDS2145_2" }, { "dataset_id": "GDS2145", "description": "1 d", "sample_id": [ "GSM34962", "GSM34963", "GSM34964", "GSM34965", "GSM34966", "GSM34967", "GSM34971", "GSM34972", "GSM34973", "GSM34974", "GSM34975", "GSM34976" ], "type": "time", "id": "GDS2145_3" }, { "dataset_id": "GDS2145", "description": "7 d", "sample_id": [ "GSM34950", "GSM34951", "GSM34952", "GSM34953", "GSM34954", "GSM34955", "GSM34956", "GSM34983", "GSM34984", "GSM34985", "GSM34986", "GSM34987" ], "type": "time", "id": "GDS2145_4" } ], "taxid": "10116", "genes": 1182, "aggregation_function": "mean", "name": "GDS2145", "version": 1.0, "instances": "24", "variables": 1185, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2145.tab", "compression": "gz" } ], [ [ "GDS2146.tab" ], { "title": "Epidermal growth factor receptor activation effect on astrocytes: time course", "description": "Analysis of astrocytes 4 or 12 hours after epidermal growth factor (EGF) treatment to activate the EGF receptor (EGFR). EGFR is activated in astrocytes after various injuries to optic nerves. Results provide insight into the role of EGFR in the formation of reactive astrocytes after neural injury.", "type": "Expression profiling by array", "pubmed_id": "16837601", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5282", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2146", "description": "control", "sample_id": [ "GSM75269", "GSM75270", "GSM75271", "GSM75272", "GSM75273", "GSM75274" ], "type": "agent", "id": "GDS2146_1" }, { "dataset_id": "GDS2146", "description": "epidermal growth factor", "sample_id": [ "GSM75265", "GSM75267", "GSM75268", "GSM75275", "GSM75276", "GSM75277" ], "type": "agent", "id": "GDS2146_2" }, { "dataset_id": "GDS2146", "description": "4 h", "sample_id": [ "GSM75265", "GSM75267", "GSM75268", "GSM75269", "GSM75270", "GSM75271" ], "type": "time", "id": "GDS2146_3" }, { "dataset_id": "GDS2146", "description": "12 h", "sample_id": [ "GSM75272", "GSM75273", "GSM75274", "GSM75275", "GSM75276", "GSM75277" ], "type": "time", "id": "GDS2146_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2146", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2146.tab", "compression": "gz" } ], [ [ "GDS2147.tab" ], { "title": "Bone morphogenic protein receptor 2 inactivation in smooth muscle effect on the lung: time course", "description": "Analysis of lungs 1 or 8 weeks following induction in smooth muscle of a dominant negative mutant form of type 2 bone morphogenic protein receptor (BMPR2). Results provide insight into the pathogenesis of hereditary pulmonary arterial hypertension (PAH), a disorder associated with BMPR2 mutations.", "type": "Expression profiling by array", "pubmed_id": "17369292", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5255", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2147", "description": "control", "sample_id": [ "GSM118653", "GSM118658" ], "type": "genotype/variation", "id": "GDS2147_1" }, { "dataset_id": "GDS2147", "description": "dominant-negative BMPR2", "sample_id": [ "GSM119284", "GSM119285", "GSM119286", "GSM119287" ], "type": "genotype/variation", "id": "GDS2147_2" }, { "dataset_id": "GDS2147", "description": "male", "sample_id": [ "GSM118658", "GSM119285", "GSM119287" ], "type": "gender", "id": "GDS2147_3" }, { "dataset_id": "GDS2147", "description": "female", "sample_id": [ "GSM118653", "GSM119284", "GSM119286" ], "type": "gender", "id": "GDS2147_4" }, { "dataset_id": "GDS2147", "description": "1 wk", "sample_id": [ "GSM119284", "GSM119285" ], "type": "time", "id": "GDS2147_5" }, { "dataset_id": "GDS2147", "description": "8 wk", "sample_id": [ "GSM118653", "GSM118658", "GSM119286", "GSM119287" ], "type": "time", "id": "GDS2147_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2147", "version": 1.0, "instances": "6", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2147.tab", "compression": "gz" } ], [ [ "GDS2149.tab" ], { "title": "PGC-1alpha null brown adipocyte response to cAMP", "description": "Analysis of PGC-1alpha null brown adipocytes treated with cAMP for 4 hours. PGC-1alpha is required for the thermogenic function of brown fat cells, and cAMP plays a role in thermogenesis. Results provide insight into the role of PGC-1alpha in the global transcriptional response to cAMP.", "type": "Expression profiling by array", "pubmed_id": "16679291", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5041", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2149", "description": "wild type", "sample_id": [ "GSM113409", "GSM113411", "GSM113412", "GSM113456" ], "type": "genotype/variation", "id": "GDS2149_1" }, { "dataset_id": "GDS2149", "description": "PGC-1alpha null", "sample_id": [ "GSM113457", "GSM113458", "GSM113459", "GSM113460" ], "type": "genotype/variation", "id": "GDS2149_2" }, { "dataset_id": "GDS2149", "description": "control", "sample_id": [ "GSM113409", "GSM113411", "GSM113457", "GSM113458" ], "type": "agent", "id": "GDS2149_3" }, { "dataset_id": "GDS2149", "description": "cAMP", "sample_id": [ "GSM113412", "GSM113456", "GSM113459", "GSM113460" ], "type": "agent", "id": "GDS2149_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2149", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2149.tab", "compression": "gz" } ], [ [ "GDS215.tab" ], { "title": "Juvenile dermatomyositis muscle profile (MuscleChip)", "description": "Examination of skeletal muscle from juvenile dermatomyositis (JDM) patients, a common pediatric inflammatory myopathy. Muscle biopsies processed singly or in mixed groups of two. Patients genotyped for TNFalpha which is associated with prolonged disease.", "type": "Expression profiling by array", "pubmed_id": "11937576", "platform": "GPL246", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4653", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE493", "order": "none", "update_date": "Jul 01 2003", "subsets": [ { "dataset_id": "GDS215", "description": "PLGG-(136-129)", "sample_id": [ "GSM4363", "GSM4364" ], "type": "specimen", "id": "GDS215_1" }, { "dataset_id": "GDS215", "description": "PSGA-(133-188)", "sample_id": [ "GSM4367", "GSM4368" ], "type": "specimen", "id": "GDS215_2" } ], "taxid": "9606", "genes": 3075, "aggregation_function": "mean", "name": "GDS215", "version": 1.0, "instances": "4", "variables": 3077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS215.tab", "compression": "gz" } ], [ [ "GDS2150.tab" ], { "title": "Spleens of males and females at puberty", "description": "Comparison of male and female spleens at pre-puberty, puberty, and post-puberty. Results provide insight into the differences in immune responses between males and females during puberty.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5306", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2150", "description": "male", "sample_id": [ "GSM119546", "GSM119545", "GSM119548", "GSM119553", "GSM119543", "GSM119552" ], "type": "gender", "id": "GDS2150_1" }, { "dataset_id": "GDS2150", "description": "female", "sample_id": [ "GSM119541", "GSM119549", "GSM119550", "GSM119547", "GSM119544", "GSM119554" ], "type": "gender", "id": "GDS2150_2" }, { "dataset_id": "GDS2150", "description": "pre-puberty", "sample_id": [ "GSM119550", "GSM119547", "GSM119548", "GSM119553" ], "type": "development stage", "id": "GDS2150_3" }, { "dataset_id": "GDS2150", "description": "puberty", "sample_id": [ "GSM119544", "GSM119554", "GSM119543", "GSM119552" ], "type": "development stage", "id": "GDS2150_4" }, { "dataset_id": "GDS2150", "description": "post-puberty", "sample_id": [ "GSM119541", "GSM119549", "GSM119546", "GSM119545" ], "type": "development stage", "id": "GDS2150_5" }, { "dataset_id": "GDS2150", "description": "3 to 4 wks", "sample_id": [ "GSM119550", "GSM119547", "GSM119548", "GSM119553" ], "type": "age", "id": "GDS2150_6" }, { "dataset_id": "GDS2150", "description": "6 to 9 wks", "sample_id": [ "GSM119544", "GSM119554", "GSM119543", "GSM119552" ], "type": "age", "id": "GDS2150_7" }, { "dataset_id": "GDS2150", "description": "24 to 28 wks", "sample_id": [ "GSM119541", "GSM119549", "GSM119546", "GSM119545" ], "type": "age", "id": "GDS2150_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2150", "version": 1.0, "instances": "12", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2150.tab", "compression": "gz" } ], [ [ "GDS2151.tab" ], { "title": "RNA helicase p68/p72 knockdown effect on skeletal muscle cells (MG-430A)", "description": "Analysis of C2C12 skeletal muscle cells following shRNA knockdown of the RNA helicases p68 and p72. C2C12 myoblasts cultured in differentiation medium to induce differentiation into skeletal muscle cells. Results provide insight into the role of p68/p72 in skeletal muscle cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5305", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2151", "description": "control", "sample_id": [ "GSM119558", "GSM119568", "GSM119571", "GSM119563", "GSM119565", "GSM119559" ], "type": "agent", "id": "GDS2151_1" }, { "dataset_id": "GDS2151", "description": "shRNA p68/p72", "sample_id": [ "GSM119575", "GSM119572", "GSM119573", "GSM119574", "GSM119567", "GSM119577" ], "type": "agent", "id": "GDS2151_2" }, { "dataset_id": "GDS2151", "description": "growth medium", "sample_id": [ "GSM119563", "GSM119565", "GSM119559", "GSM119574", "GSM119567", "GSM119577" ], "type": "growth protocol", "id": "GDS2151_3" }, { "dataset_id": "GDS2151", "description": "differentiation medium", "sample_id": [ "GSM119558", "GSM119568", "GSM119571", "GSM119575", "GSM119572", "GSM119573" ], "type": "growth protocol", "id": "GDS2151_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2151", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2151.tab", "compression": "gz" } ], [ [ "GDS2152.tab" ], { "title": "RNA helicase p68/p72 knockdown effect on skeletal muscle cells (MG-430B)", "description": "Analysis of C2C12 skeletal muscle cells following shRNA knockdown of the RNA helicases p68 and p72. C2C12 myoblasts cultured in differentiation medium to induce differentiation into skeletal muscle cells. Results provide insight into the role of p68/p72 in skeletal muscle cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5305", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2152", "description": "control", "sample_id": [ "GSM119578", "GSM119560", "GSM119579", "GSM119564", "GSM119580", "GSM119576" ], "type": "agent", "id": "GDS2152_1" }, { "dataset_id": "GDS2152", "description": "shRNA p68/p72", "sample_id": [ "GSM119561", "GSM119562", "GSM119569", "GSM119570", "GSM119566", "GSM119581" ], "type": "agent", "id": "GDS2152_2" }, { "dataset_id": "GDS2152", "description": "growth medium", "sample_id": [ "GSM119564", "GSM119580", "GSM119576", "GSM119570", "GSM119566", "GSM119581" ], "type": "growth protocol", "id": "GDS2152_3" }, { "dataset_id": "GDS2152", "description": "differentiation medium", "sample_id": [ "GSM119578", "GSM119560", "GSM119579", "GSM119561", "GSM119562", "GSM119569" ], "type": "growth protocol", "id": "GDS2152_4" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2152", "version": 1.0, "instances": "12", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2152.tab", "compression": "gz" } ], [ [ "GDS2153.tab" ], { "title": "Dermatomyositis", "description": "Analysis of skeletal muscle biopsies of 5 patients with dermatomyositis (DM). DM is an idiopathic inflammatory myopathy characterized by muscle weakness and skin lesions. Results provide insight into the pathogenic pathways responsible for muscle fiber damage and dysfunction in myositis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5370", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2153", "description": "normal", "sample_id": [ "GSM119936", "GSM119937", "GSM74359", "GSM74360" ], "type": "disease state", "id": "GDS2153_1" }, { "dataset_id": "GDS2153", "description": "dermatomyositis", "sample_id": [ "GSM118580", "GSM118624", "GSM118659", "GSM118660", "GSM118661" ], "type": "disease state", "id": "GDS2153_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2153", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2153.tab", "compression": "gz" } ], [ [ "GDS2154.tab" ], { "title": "Inflammatory dilated cardiomyopathy", "description": "Analysis of parvovirus B19 positive endomyocardial biopsy (EMB) specimens from patients with inflammatory dilated cardiomyopathy (DCMi). Results report on a distinctive cardiac expression pattern in DCMi thereby providing insight into the pathogenesis of this DCM subtype.", "type": "Expression profiling by array", "pubmed_id": "17106732", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4172", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2154", "description": "healthy", "sample_id": [ "GSM94831", "GSM94854", "GSM94855", "GSM94870" ], "type": "disease state", "id": "GDS2154_1" }, { "dataset_id": "GDS2154", "description": "inflammatory dilated cardiomyopathy", "sample_id": [ "GSM94836", "GSM94837", "GSM94838", "GSM94839", "GSM94840", "GSM94841", "GSM94842", "GSM94843" ], "type": "disease state", "id": "GDS2154_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2154", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2154.tab", "compression": "gz" } ], [ [ "GDS2156.tab" ], { "title": "BRG1 maternally depleted embryos", "description": "Analysis of two-cell stage embryos maternally depleted for BRG1, a catalytic subunit of SWI/SNF-related chromatin remodeling complexes. After fertilization, the embryo shifts from maternal to zygotic genome expression. Results provide insight into the role of Brg1 in this transition.", "type": "Expression profiling by array", "pubmed_id": "16818606", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5371", "order": "none", "update_date": "Mar 15 2007", "subsets": [ { "dataset_id": "GDS2156", "description": "wild type", "sample_id": [ "GSM122519", "GSM122520", "GSM122521", "GSM122522" ], "type": "genotype/variation", "id": "GDS2156_1" }, { "dataset_id": "GDS2156", "description": "BRG1 depleted", "sample_id": [ "GSM122523", "GSM122524", "GSM122525", "GSM122526" ], "type": "genotype/variation", "id": "GDS2156_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2156", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2156.tab", "compression": "gz" } ], [ [ "GDS2157.tab" ], { "title": "Mammary gland side population cells", "description": "Analysis of Hoechst dye 33342-effluxing side population cells (SPs) from the mammary glands of 4 to 6 week old C57/BL6 virgins. Results provide insight into the stem cell potential of mammary gland SPs.", "type": "Expression profiling by array", "pubmed_id": "16282442", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE5309", "order": "none", "update_date": "Mar 20 2007", "subsets": [ { "dataset_id": "GDS2157", "description": "universal mouse reference RNA", "sample_id": [ "GSM120373" ], "type": "specimen", "id": "GDS2157_1" }, { "dataset_id": "GDS2157", "description": "non-side population cell", "sample_id": [ "GSM120370", "GSM120372", "GSM120375" ], "type": "specimen", "id": "GDS2157_2" }, { "dataset_id": "GDS2157", "description": "side population cell", "sample_id": [ "GSM120369", "GSM120371", "GSM120374" ], "type": "specimen", "id": "GDS2157_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2157", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2157.tab", "compression": "gz" } ], [ [ "GDS2158.tab" ], { "title": "Emery-Dreifuss muscular dystrophy model: regenerating skeletal muscle", "description": "Analysis of regenerating gastrocnemius muscles of emerin and lamin A/C knockout mutants at various time points up to 4 days following treatment with cardiotoxin to induce muscle injury. Mutations in emerin and lamin A/C cause Emery-Dreifuss muscular dystrophy (EDMD).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE5304", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2158", "description": "control", "sample_id": [ "GSM100719", "GSM119594", "GSM119601", "GSM119595", "GSM119603", "GSM119607" ], "type": "genotype/variation", "id": "GDS2158_1" }, { "dataset_id": "GDS2158", "description": "emerin knocout", "sample_id": [ "GSM119596", "GSM119612", "GSM119608", "GSM119597", "GSM119598", "GSM119613", "GSM119604", "GSM119602" ], "type": "genotype/variation", "id": "GDS2158_2" }, { "dataset_id": "GDS2158", "description": "lamin AC knockout", "sample_id": [ "GSM119600", "GSM119609", "GSM119605", "GSM119606", "GSM119599", "GSM119610", "GSM119611", "GSM102959", "GSM119614" ], "type": "genotype/variation", "id": "GDS2158_3" }, { "dataset_id": "GDS2158", "description": "untreated", "sample_id": [ "GSM100719", "GSM119594", "GSM119596", "GSM119612", "GSM119600", "GSM119609", "GSM119605" ], "type": "agent", "id": "GDS2158_4" }, { "dataset_id": "GDS2158", "description": "cardiotoxin", "sample_id": [ "GSM119601", "GSM119595", "GSM119603", "GSM119607", "GSM119608", "GSM119597", "GSM119598", "GSM119613", "GSM119604", "GSM119602", "GSM119606", "GSM119599", "GSM119610", "GSM119611", "GSM102959", "GSM119614" ], "type": "agent", "id": "GDS2158_5" }, { "dataset_id": "GDS2158", "description": "0 d", "sample_id": [ "GSM100719", "GSM119594", "GSM119596", "GSM119612", "GSM119600", "GSM119609", "GSM119605" ], "type": "time", "id": "GDS2158_6" }, { "dataset_id": "GDS2158", "description": "3 d", "sample_id": [ "GSM119601", "GSM119595", "GSM119608", "GSM119597", "GSM119598", "GSM119606", "GSM119599", "GSM119610" ], "type": "time", "id": "GDS2158_7" }, { "dataset_id": "GDS2158", "description": "4 d", "sample_id": [ "GSM119603", "GSM119607", "GSM119613", "GSM119604", "GSM119602", "GSM119611", "GSM102959", "GSM119614" ], "type": "time", "id": "GDS2158_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2158", "version": 1.0, "instances": "23", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2158.tab", "compression": "gz" } ], [ [ "GDS2159.tab" ], { "title": "Spinal cord injury model: time course", "description": "Analysis of the T8 spinal cord segment up to 28 days after moderate contusion injury. Gene expression at the site of impact compared to that at the adjacent rostral and caudal regions. Results provide insight into the pathophysiology of secondary responses after moderate spinal cord injury (SCI).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "count", "reference_series": "GSE5296", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2159", "description": "naive", "sample_id": [ "GSM119776", "GSM119786", "GSM119833", "GSM119834", "GSM119842", "GSM119849" ], "type": "protocol", "id": "GDS2159_1" }, { "dataset_id": "GDS2159", "description": "sham injury", "sample_id": [ "GSM119767", "GSM119770", "GSM119771", "GSM119777", "GSM119778", "GSM119781", "GSM119782", "GSM119787", "GSM119792", "GSM119793", "GSM119796", "GSM119797", "GSM119801", "GSM119802", "GSM119803", "GSM119807", "GSM119808", "GSM119809", "GSM119810", "GSM119812", "GSM119813", "GSM119816", "GSM119820", "GSM119824", "GSM119825", "GSM119827", "GSM119828", "GSM119829", "GSM119838", "GSM119839", "GSM119844", "GSM119845", "GSM119850", "GSM119851", "GSM119852", "GSM119854" ], "type": "protocol", "id": "GDS2159_2" }, { "dataset_id": "GDS2159", "description": "moderate injury", "sample_id": [ "GSM118664", "GSM118672", "GSM119764", "GSM119765", "GSM119766", "GSM119768", "GSM119769", "GSM119772", "GSM119773", "GSM119774", "GSM119775", "GSM119779", "GSM119780", "GSM119783", "GSM119784", "GSM119785", "GSM119788", "GSM119789", "GSM119790", "GSM119791", "GSM119794", "GSM119795", "GSM119798", "GSM119799", "GSM119800", "GSM119804", "GSM119805", "GSM119806", "GSM119811", "GSM119814", "GSM119815", "GSM119817", "GSM119818", "GSM119819", "GSM119821", "GSM119822", "GSM119823", "GSM119826", "GSM119830", "GSM119831", "GSM119832", "GSM119835", "GSM119836", "GSM119837", "GSM119840", "GSM119841", "GSM119843", "GSM119846", "GSM119847", "GSM119848", "GSM119853", "GSM119855", "GSM119856", "GSM120018" ], "type": "protocol", "id": "GDS2159_3" }, { "dataset_id": "GDS2159", "description": "site of trauma", "sample_id": [ "GSM119772", "GSM119773", "GSM119774", "GSM119775", "GSM119776", "GSM119777", "GSM119778", "GSM119788", "GSM119789", "GSM119790", "GSM119791", "GSM119792", "GSM119793", "GSM119798", "GSM119799", "GSM119804", "GSM119805", "GSM119806", "GSM119807", "GSM119808", "GSM119809", "GSM119810", "GSM119817", "GSM119826", "GSM119827", "GSM119828", "GSM119829", "GSM119840", "GSM119841", "GSM119842", "GSM119853", "GSM119854" ], "type": "specimen", "id": "GDS2159_4" }, { "dataset_id": "GDS2159", "description": "rostral to trauma", "sample_id": [ "GSM118664", "GSM118672", "GSM119764", "GSM119765", "GSM119766", "GSM119767", "GSM119779", "GSM119780", "GSM119781", "GSM119782", "GSM119794", "GSM119795", "GSM119796", "GSM119797", "GSM119800", "GSM119801", "GSM119802", "GSM119811", "GSM119812", "GSM119813", "GSM119818", "GSM119819", "GSM119820", "GSM119830", "GSM119831", "GSM119832", "GSM119833", "GSM119834", "GSM119843", "GSM119844", "GSM119845", "GSM120018" ], "type": "specimen", "id": "GDS2159_5" }, { "dataset_id": "GDS2159", "description": "caudal to trauma", "sample_id": [ "GSM119768", "GSM119769", "GSM119770", "GSM119771", "GSM119783", "GSM119784", "GSM119785", "GSM119786", "GSM119787", "GSM119803", "GSM119814", "GSM119815", "GSM119816", "GSM119821", "GSM119822", "GSM119823", "GSM119824", "GSM119825", "GSM119835", "GSM119836", "GSM119837", "GSM119838", "GSM119839", "GSM119846", "GSM119847", "GSM119848", "GSM119849", "GSM119850", "GSM119851", "GSM119852", "GSM119855", "GSM119856" ], "type": "specimen", "id": "GDS2159_6" }, { "dataset_id": "GDS2159", "description": "0 h", "sample_id": [ "GSM119776", "GSM119786", "GSM119833", "GSM119834", "GSM119842", "GSM119849" ], "type": "time", "id": "GDS2159_7" }, { "dataset_id": "GDS2159", "description": "0.5 h", "sample_id": [ "GSM118664", "GSM118672", "GSM119764", "GSM119770", "GSM119783", "GSM119804", "GSM119805", "GSM119812", "GSM119824", "GSM119827", "GSM119840", "GSM119844", "GSM119846", "GSM119854", "GSM119855" ], "type": "time", "id": "GDS2159_8" }, { "dataset_id": "GDS2159", "description": "4 h", "sample_id": [ "GSM119766", "GSM119777", "GSM119780", "GSM119782", "GSM119784", "GSM119785", "GSM119792", "GSM119796", "GSM119799", "GSM119800", "GSM119822", "GSM119825", "GSM119826", "GSM119851", "GSM119853" ], "type": "time", "id": "GDS2159_9" }, { "dataset_id": "GDS2159", "description": "24 h", "sample_id": [ "GSM119768", "GSM119772", "GSM119779", "GSM119781", "GSM119798", "GSM119806", "GSM119807", "GSM119811", "GSM119821", "GSM119828", "GSM119835", "GSM119838", "GSM119845", "GSM119850", "GSM120018" ], "type": "time", "id": "GDS2159_10" }, { "dataset_id": "GDS2159", "description": "72 h", "sample_id": [ "GSM119771", "GSM119774", "GSM119790", "GSM119793", "GSM119795", "GSM119797", "GSM119801", "GSM119803", "GSM119809", "GSM119815", "GSM119817", "GSM119818", "GSM119819", "GSM119837", "GSM119856" ], "type": "time", "id": "GDS2159_11" }, { "dataset_id": "GDS2159", "description": "7 d", "sample_id": [ "GSM119767", "GSM119769", "GSM119775", "GSM119778", "GSM119787", "GSM119791", "GSM119802", "GSM119810", "GSM119823", "GSM119831", "GSM119832", "GSM119841", "GSM119843", "GSM119848", "GSM119852" ], "type": "time", "id": "GDS2159_12" }, { "dataset_id": "GDS2159", "description": "28 d", "sample_id": [ "GSM119765", "GSM119773", "GSM119788", "GSM119789", "GSM119794", "GSM119808", "GSM119813", "GSM119814", "GSM119816", "GSM119820", "GSM119829", "GSM119830", "GSM119836", "GSM119839", "GSM119847" ], "type": "time", "id": "GDS2159_13" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2159", "version": 1.0, "instances": "96", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2159.tab", "compression": "gz" } ], [ [ "GDS2160.tab" ], { "title": "CH1 domain deletions in p300 and CBP effect on hypoxic fibroblasts", "description": "Analysis of hypoxic fibroblasts bearing deletions in the CH1 domains of 1 allele of p300 and 2 alleles of CBP. CH1 domains interact with the C-TAD domain of hypoxia-inducible transcription factors HIF-1a and -2a. Results provide insight into the role of CH1 domains in the hypoxia response.", "type": "Expression profiling by array", "pubmed_id": "16237459", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3195", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS2160", "description": "wild type", "sample_id": [ "GSM67322", "GSM67324" ], "type": "genotype/variation", "id": "GDS2160_1" }, { "dataset_id": "GDS2160", "description": "triple CH1 domain deletions", "sample_id": [ "GSM67323", "GSM67325" ], "type": "genotype/variation", "id": "GDS2160_2" }, { "dataset_id": "GDS2160", "description": "normoxia", "sample_id": [ "GSM67322", "GSM67323" ], "type": "stress", "id": "GDS2160_3" }, { "dataset_id": "GDS2160", "description": "hypoxia", "sample_id": [ "GSM67324", "GSM67325" ], "type": "stress", "id": "GDS2160_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2160", "version": 1.0, "instances": "4", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2160.tab", "compression": "gz" } ], [ [ "GDS2161.tab" ], { "title": "CH1 domain deletion, p300 and CBP heterozygous null mutant fibroblasts response to hypoxia", "description": "Analysis of hypoxic fibroblasts with deletions in the CH1 domains of p300 and CBP combined with a p300 or CBP allele knockout. CH1 domains interact with the C-TAD domain of hypoxia-inducible transcription factors HIF-1a and -2a. Results provide insight into the role for CH1 domains in hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16237459", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3196", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS2161", "description": "triple CH1 delns, CBP knock out allele", "sample_id": [ "GSM67329", "GSM67335" ], "type": "genotype/variation", "id": "GDS2161_1" }, { "dataset_id": "GDS2161", "description": "triple CH1 delns, p300 knock out allele", "sample_id": [ "GSM67327", "GSM67331", "GSM67333", "GSM67337" ], "type": "genotype/variation", "id": "GDS2161_2" }, { "dataset_id": "GDS2161", "description": "CBP knock out allele", "sample_id": [ "GSM67328", "GSM67334" ], "type": "genotype/variation", "id": "GDS2161_3" }, { "dataset_id": "GDS2161", "description": "p300 knock out allele", "sample_id": [ "GSM67326", "GSM67330", "GSM67332", "GSM67336" ], "type": "genotype/variation", "id": "GDS2161_4" }, { "dataset_id": "GDS2161", "description": "normoxia", "sample_id": [ "GSM67326", "GSM67327", "GSM67328", "GSM67329", "GSM67330", "GSM67331" ], "type": "stress", "id": "GDS2161_5" }, { "dataset_id": "GDS2161", "description": "hypoxia", "sample_id": [ "GSM67332", "GSM67333", "GSM67334", "GSM67335", "GSM67336", "GSM67337" ], "type": "stress", "id": "GDS2161_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2161", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2161.tab", "compression": "gz" } ], [ [ "GDS2162.tab" ], { "title": "CH1 domain deletion, p300 and CBP heterozygous null mutant hypoxic fibroblasts response to trichostatin A", "description": "Analysis of trichostatin A (TSA)-treated hypoxic fibroblasts with deletions in CH1 domains of p300 and CBP, and a p300 or CBP allele knockout. TSA is a histone deacetylase inhibitor. Results provide insight into the role of deacetylase activity in CH1-independent hypoxia inducible transcription.", "type": "Expression profiling by array", "pubmed_id": "16237459", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3296", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS2162", "description": "triple CH1 delns, CBP knock out allele", "sample_id": [ "GSM67339", "GSM67343", "GSM67347", "GSM67351" ], "type": "genotype/variation", "id": "GDS2162_1" }, { "dataset_id": "GDS2162", "description": "triple CH1 delns, p300 knock out allele", "sample_id": [ "GSM67341", "GSM67345", "GSM67349", "GSM67353" ], "type": "genotype/variation", "id": "GDS2162_2" }, { "dataset_id": "GDS2162", "description": "CBP knock out allele", "sample_id": [ "GSM67338", "GSM67342", "GSM67346", "GSM67350" ], "type": "genotype/variation", "id": "GDS2162_3" }, { "dataset_id": "GDS2162", "description": "p300 knock out allele", "sample_id": [ "GSM67340", "GSM67344", "GSM67348", "GSM67352" ], "type": "genotype/variation", "id": "GDS2162_4" }, { "dataset_id": "GDS2162", "description": "EtOH", "sample_id": [ "GSM67338", "GSM67339", "GSM67340", "GSM67341" ], "type": "agent", "id": "GDS2162_5" }, { "dataset_id": "GDS2162", "description": "TSA", "sample_id": [ "GSM67342", "GSM67343", "GSM67344", "GSM67345" ], "type": "agent", "id": "GDS2162_6" }, { "dataset_id": "GDS2162", "description": "DP", "sample_id": [ "GSM67346", "GSM67347", "GSM67348", "GSM67349" ], "type": "agent", "id": "GDS2162_7" }, { "dataset_id": "GDS2162", "description": "TSA and DP", "sample_id": [ "GSM67350", "GSM67351", "GSM67352", "GSM67353" ], "type": "agent", "id": "GDS2162_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2162", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2162.tab", "compression": "gz" } ], [ [ "GDS2163.tab" ], { "title": "Paneth cell response to intestinal colonization", "description": "Analysis of Paneth cells harvested by LCM from germ-free animals and previously germ-free animals reconstituted with normal intestinal flora. Paneth cells are key effectors of small intestinal antimicrobial defense. Results provide insight into how intestinal surfaces cope with microbial challenges.", "type": "Expression profiling by array", "pubmed_id": "16931762", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5156", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2163", "description": "germ-free", "sample_id": [ "GSM116357", "GSM116358" ], "type": "agent", "id": "GDS2163_1" }, { "dataset_id": "GDS2163", "description": "normal flora", "sample_id": [ "GSM116359", "GSM116360" ], "type": "agent", "id": "GDS2163_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2163", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2163.tab", "compression": "gz" } ], [ [ "GDS2164.tab" ], { "title": "Simian immune deficiency virus Nef protein expression effect on CD4+ T cells", "description": "Analysis of Jurkat CD4+ T cells following induction of simian immune deficiency virus (SIV) Nef from an inducible promoter. The Nef protein is expressed early in HIV and SIV infections and plays a crucial role in disease progression. Results identify Nef-mediated changes in T cell gene expression.", "type": "Expression profiling by array", "pubmed_id": "16857233", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4785", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2164", "description": "control", "sample_id": [ "GSM108093", "GSM108094", "GSM108095" ], "type": "agent", "id": "GDS2164_1" }, { "dataset_id": "GDS2164", "description": "SIV-Nef", "sample_id": [ "GSM108096", "GSM108097", "GSM108098" ], "type": "agent", "id": "GDS2164_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2164", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2164.tab", "compression": "gz" } ], [ [ "GDS2165.tab" ], { "title": "Lung response to Influenza A virus and Streptococcus pneumoniae infections: time course", "description": "Analysis of female C57BL/6 lungs at various time points after influenza A virus or Streptococcus pneumoniae infection. Secondary bacterial infection during or after influenza recovery is common cause of pneumonia (PN). Results provide insight into molecular pathogenesis of severe infectious PN.", "type": "Expression profiling by array", "pubmed_id": "17163962", "platform": "GPL1868", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8014", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE5289", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2165", "description": "influenza A virus", "sample_id": [ "GSM119734", "GSM119735", "GSM119736", "GSM119737" ], "type": "infection", "id": "GDS2165_1" }, { "dataset_id": "GDS2165", "description": "Streptococcus pneumoniae", "sample_id": [ "GSM84211", "GSM84212", "GSM84213" ], "type": "infection", "id": "GDS2165_2" }, { "dataset_id": "GDS2165", "description": "12 h", "sample_id": [ "GSM84213" ], "type": "time", "id": "GDS2165_3" }, { "dataset_id": "GDS2165", "description": "24 h", "sample_id": [ "GSM84211", "GSM119734" ], "type": "time", "id": "GDS2165_4" }, { "dataset_id": "GDS2165", "description": "48 h", "sample_id": [ "GSM84212", "GSM119735" ], "type": "time", "id": "GDS2165_5" }, { "dataset_id": "GDS2165", "description": "96 h", "sample_id": [ "GSM119736" ], "type": "time", "id": "GDS2165_6" }, { "dataset_id": "GDS2165", "description": "168 h", "sample_id": [ "GSM119737" ], "type": "time", "id": "GDS2165_7" } ], "taxid": "10090", "genes": 7670, "aggregation_function": "mean", "name": "GDS2165", "version": 1.0, "instances": "7", "variables": 7673, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2165.tab", "compression": "gz" } ], [ [ "GDS2167.tab" ], { "title": "Activin ligand effect on LbetaT2 gonadotrope cell line: time course", "description": "Analysis of LbetaT2 pituitary gonadotrope cells at various time points up to 6 hours following treatment with activin. Activin, a member of the follicle stimulating hormone (FSH) beta superfamily of ligands, stimulates the secretion FSH from the gonadotrope cells of the anterior pituitary.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5232", "order": "none", "update_date": "Mar 19 2007", "subsets": [ { "dataset_id": "GDS2167", "description": "control", "sample_id": [ "GSM118435", "GSM118437", "GSM118439" ], "type": "agent", "id": "GDS2167_1" }, { "dataset_id": "GDS2167", "description": "activin", "sample_id": [ "GSM118434", "GSM118436", "GSM118438" ], "type": "agent", "id": "GDS2167_2" }, { "dataset_id": "GDS2167", "description": "1 h", "sample_id": [ "GSM118434", "GSM118435" ], "type": "time", "id": "GDS2167_3" }, { "dataset_id": "GDS2167", "description": "2 h", "sample_id": [ "GSM118436", "GSM118437" ], "type": "time", "id": "GDS2167_4" }, { "dataset_id": "GDS2167", "description": "6 h", "sample_id": [ "GSM118438", "GSM118439" ], "type": "time", "id": "GDS2167_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2167", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2167.tab", "compression": "gz" } ], [ [ "GDS2168.tab" ], { "title": "HIV viremia effect on monocytes", "description": "Analysis of CD14+ monocytes from 8 HIV patients at the aviremic state during highly active antiretroviral therapy (HAART) and at the viremic state after the cessation of HAART. Results provide insight into the impact of HIV infection and high-level HIV viremia on the function of monocytes.", "type": "Expression profiling by array", "pubmed_id": "17005663", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE5220", "order": "none", "update_date": "Mar 20 2007", "subsets": [ { "dataset_id": "GDS2168", "description": "patient A", "sample_id": [ "GSM118290", "GSM118298" ], "type": "individual", "id": "GDS2168_1" }, { "dataset_id": "GDS2168", "description": "patient B", "sample_id": [ "GSM118291", "GSM118299" ], "type": "individual", "id": "GDS2168_2" }, { "dataset_id": "GDS2168", "description": "patient C", "sample_id": [ "GSM118292", "GSM118300" ], "type": "individual", "id": "GDS2168_3" }, { "dataset_id": "GDS2168", "description": "patient D", "sample_id": [ "GSM118293", "GSM118301" ], "type": "individual", "id": "GDS2168_4" }, { "dataset_id": "GDS2168", "description": "patient E", "sample_id": [ "GSM118294", "GSM118302" ], "type": "individual", "id": "GDS2168_5" }, { "dataset_id": "GDS2168", "description": "patient F", "sample_id": [ "GSM118295", "GSM118303" ], "type": "individual", "id": "GDS2168_6" }, { "dataset_id": "GDS2168", "description": "patient G", "sample_id": [ "GSM118296", "GSM118304" ], "type": "individual", "id": "GDS2168_7" }, { "dataset_id": "GDS2168", "description": "patient H", "sample_id": [ "GSM118297", "GSM118305" ], "type": "individual", "id": "GDS2168_8" }, { "dataset_id": "GDS2168", "description": "aviremic", "sample_id": [ "GSM118290", "GSM118291", "GSM118292", "GSM118293", "GSM118294", "GSM118295", "GSM118296", "GSM118297" ], "type": "disease state", "id": "GDS2168_9" }, { "dataset_id": "GDS2168", "description": "viremic", "sample_id": [ "GSM118298", "GSM118299", "GSM118300", "GSM118301", "GSM118302", "GSM118303", "GSM118304", "GSM118305" ], "type": "disease state", "id": "GDS2168_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2168", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2168.tab", "compression": "gz" } ], [ [ "GDS2169.tab" ], { "title": "Nuclear and extranuclear mutant huntingtin exon 1 protein effect on cerebellum", "description": "Analysis of cerebella of transgenics expressing mutant huntingtin (htt) exon 1 protein in nucleus only or in both nucleus and cytoplasm. The polyglutamine (polyQ) expansion in htt results in Huntington's disease (HD). Results provide insight into the impact of subcellular location of polyQ in HD.", "type": "Expression profiling by array", "pubmed_id": "16183657", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE3248", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2169", "description": "control", "sample_id": [ "GSM73186", "GSM73189", "GSM73191", "GSM73218", "GSM73221", "GSM73231", "GSM73200", "GSM73228", "GSM73198", "GSM73199", "GSM73227", "GSM73209", "GSM73205", "GSM73208", "GSM73222", "GSM73223", "GSM73217", "GSM73216", "GSM73224", "GSM73212", "GSM73214", "GSM73196", "GSM73197", "GSM73192" ], "type": "agent", "id": "GDS2169_1" }, { "dataset_id": "GDS2169", "description": "nuclear polyQ", "sample_id": [ "GSM73203", "GSM73204", "GSM73207", "GSM73201", "GSM73202", "GSM73206", "GSM73215", "GSM73225", "GSM73211", "GSM73213", "GSM73193", "GSM73194", "GSM73195" ], "type": "agent", "id": "GDS2169_2" }, { "dataset_id": "GDS2169", "description": "extranulcear and nuclear polyQ", "sample_id": [ "GSM73187", "GSM73188", "GSM73190", "GSM73219", "GSM73220", "GSM73232", "GSM73233", "GSM73226", "GSM73229", "GSM73230", "GSM73210" ], "type": "agent", "id": "GDS2169_3" }, { "dataset_id": "GDS2169", "description": "transgenic S25", "sample_id": [ "GSM73203", "GSM73204", "GSM73207", "GSM73209", "GSM73205", "GSM73208" ], "type": "strain", "id": "GDS2169_4" }, { "dataset_id": "GDS2169", "description": "transgenic S46", "sample_id": [ "GSM73201", "GSM73202", "GSM73206", "GSM73215", "GSM73225", "GSM73211", "GSM73213", "GSM73222", "GSM73223", "GSM73217", "GSM73216", "GSM73224", "GSM73212", "GSM73214" ], "type": "strain", "id": "GDS2169_5" }, { "dataset_id": "GDS2169", "description": "transgenic x50", "sample_id": [ "GSM73193", "GSM73194", "GSM73195", "GSM73196", "GSM73197", "GSM73192" ], "type": "strain", "id": "GDS2169_6" }, { "dataset_id": "GDS2169", "description": "transgenic A39", "sample_id": [ "GSM73187", "GSM73188", "GSM73190", "GSM73219", "GSM73220", "GSM73232", "GSM73233", "GSM73186", "GSM73189", "GSM73191", "GSM73218", "GSM73221", "GSM73231", "GSM73200" ], "type": "strain", "id": "GDS2169_7" }, { "dataset_id": "GDS2169", "description": "transgenic A61", "sample_id": [ "GSM73226", "GSM73229", "GSM73230", "GSM73210", "GSM73228", "GSM73198", "GSM73199", "GSM73227" ], "type": "strain", "id": "GDS2169_8" }, { "dataset_id": "GDS2169", "description": "3 m", "sample_id": [ "GSM73209", "GSM73205", "GSM73208", "GSM73203", "GSM73204", "GSM73207" ], "type": "age", "id": "GDS2169_9" }, { "dataset_id": "GDS2169", "description": "3.5 m", "sample_id": [ "GSM73216", "GSM73224", "GSM73212", "GSM73214", "GSM73215", "GSM73225", "GSM73211", "GSM73213" ], "type": "age", "id": "GDS2169_10" }, { "dataset_id": "GDS2169", "description": "4 m", "sample_id": [ "GSM73218", "GSM73221", "GSM73231", "GSM73200", "GSM73219", "GSM73220", "GSM73232", "GSM73233" ], "type": "age", "id": "GDS2169_11" }, { "dataset_id": "GDS2169", "description": "8 m", "sample_id": [ "GSM73228", "GSM73198", "GSM73199", "GSM73227", "GSM73226", "GSM73229", "GSM73230", "GSM73210" ], "type": "age", "id": "GDS2169_12" }, { "dataset_id": "GDS2169", "description": "10 m", "sample_id": [ "GSM73186", "GSM73189", "GSM73191", "GSM73222", "GSM73223", "GSM73217", "GSM73187", "GSM73188", "GSM73190", "GSM73201", "GSM73202", "GSM73206" ], "type": "age", "id": "GDS2169_13" }, { "dataset_id": "GDS2169", "description": "16 m", "sample_id": [ "GSM73196", "GSM73197", "GSM73192", "GSM73193", "GSM73194", "GSM73195" ], "type": "age", "id": "GDS2169_14" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2169", "version": 1.0, "instances": "48", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2169.tab", "compression": "gz" } ], [ [ "GDS2170.tab" ], { "title": "Transcription factor IIF cofactor GAS41 overexpression", "description": "Analysis of SaoS2 cells overexpressing GAS41, a cofactor of the general transcription factor IIF. GAS41 expression from a tet-off vector was suppressed by the addition of doxycycline. Results provide insight into the role of GAS41 in eukaryotic transcription initiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5216", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2170", "description": "pTRE2pur plasmid", "sample_id": [ "GSM118258", "GSM118259", "GSM118262", "GSM118263", "GSM118266", "GSM118267" ], "type": "protocol", "id": "GDS2170_1" }, { "dataset_id": "GDS2170", "description": "pTRE2pur plasmid and GAS41", "sample_id": [ "GSM118260", "GSM118261", "GSM118264", "GSM118265", "GSM118268", "GSM118269" ], "type": "protocol", "id": "GDS2170_2" }, { "dataset_id": "GDS2170", "description": "untreated", "sample_id": [ "GSM118259", "GSM118261", "GSM118263", "GSM118265", "GSM118267", "GSM118269" ], "type": "agent", "id": "GDS2170_3" }, { "dataset_id": "GDS2170", "description": "doxycycline", "sample_id": [ "GSM118258", "GSM118260", "GSM118262", "GSM118264", "GSM118266", "GSM118268" ], "type": "agent", "id": "GDS2170_4" }, { "dataset_id": "GDS2170", "description": "control", "sample_id": [ "GSM118258", "GSM118259", "GSM118262", "GSM118263", "GSM118266", "GSM118267" ], "type": "other", "id": "GDS2170_5" }, { "dataset_id": "GDS2170", "description": "GAS41 repressed", "sample_id": [ "GSM118260", "GSM118264", "GSM118268" ], "type": "other", "id": "GDS2170_6" }, { "dataset_id": "GDS2170", "description": "GAS41 induced", "sample_id": [ "GSM118261", "GSM118265", "GSM118269" ], "type": "other", "id": "GDS2170_7" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS2170", "version": 1.0, "instances": "12", "variables": 45750, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2170.tab", "compression": "gz" } ], [ [ "GDS2171.tab" ], { "title": "Prostate adenocarcinomas of various Gleason patterns", "description": "Analysis of prostate adenocarcinoma specimens with Gleason patterns 3, 4, or 5. Adenocarcinoma specimens obtained by radical prostatectomy. Results identify molecular alterations underlying prostate cancer grades.", "type": "Expression profiling by array", "pubmed_id": "16829574", "platform": "GPL3834", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15488", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "31", "value_type": "log2 ratio", "reference_series": "GSE5132", "order": "none", "update_date": "Mar 20 2007", "subsets": [ { "dataset_id": "GDS2171", "description": "Gleason Pattern 3", "sample_id": [ "GSM115759", "GSM115764", "GSM115765", "GSM115768", "GSM115770", "GSM115775", "GSM115783", "GSM115784", "GSM115785", "GSM115786", "GSM115789" ], "type": "disease state", "id": "GDS2171_1" }, { "dataset_id": "GDS2171", "description": "Gleason Pattern 4", "sample_id": [ "GSM115760", "GSM115761", "GSM115762", "GSM115766", "GSM115767", "GSM115771", "GSM115773", "GSM115776", "GSM115777", "GSM115778", "GSM115779", "GSM115790" ], "type": "disease state", "id": "GDS2171_2" }, { "dataset_id": "GDS2171", "description": "Gleason Pattern 5", "sample_id": [ "GSM115763", "GSM115772", "GSM115774", "GSM115780", "GSM115781", "GSM115782", "GSM115787", "GSM115788" ], "type": "disease state", "id": "GDS2171_3" } ], "taxid": "9606", "genes": 5894, "aggregation_function": "mean", "name": "GDS2171", "version": 1.0, "instances": "31", "variables": 5896, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2171.tab", "compression": "gz" } ], [ [ "GDS2172.tab" ], { "title": "Pressure overload-induced cardiac hypertrophy effect on interleukin-18 null hearts", "description": "Analysis of left ventricles of interleukin (IL)-18 null mutants following surgical transaortic constriction (TAC) to induce cardiac hypertrophy (LVH) by pressure overload. IL-18 is a cardiotropic proinflammatory cytokine. Results provide insight into the role of IL-18 in the hypertrophic response.", "type": "Expression profiling by array", "pubmed_id": "17250807", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5129", "order": "none", "update_date": "Mar 20 2007", "subsets": [ { "dataset_id": "GDS2172", "description": "wild type", "sample_id": [ "GSM115818", "GSM115819" ], "type": "genotype/variation", "id": "GDS2172_1" }, { "dataset_id": "GDS2172", "description": "IL-18 knockout", "sample_id": [ "GSM115791", "GSM115815" ], "type": "genotype/variation", "id": "GDS2172_2" }, { "dataset_id": "GDS2172", "description": "sham operation", "sample_id": [ "GSM115815", "GSM115819" ], "type": "protocol", "id": "GDS2172_3" }, { "dataset_id": "GDS2172", "description": "transaortic constriction", "sample_id": [ "GSM115791", "GSM115818" ], "type": "protocol", "id": "GDS2172_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2172", "version": 1.0, "instances": "4", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2172.tab", "compression": "gz" } ], [ [ "GDS2173.tab" ], { "title": "Life-long exercise effect on the heart", "description": "Analysis of left heart ventricles of 16 month-old Sprague-Dawley females that had no access to physical activity, had access to twice-weekly one-hour physical activity, or had access to a running wheel.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE5085", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2173", "description": "sedentary", "sample_id": [ "GSM114626", "GSM114627", "GSM114628", "GSM114629" ], "type": "protocol", "id": "GDS2173_1" }, { "dataset_id": "GDS2173", "description": "twice a week activity", "sample_id": [ "GSM114622", "GSM114623", "GSM114624", "GSM114625" ], "type": "protocol", "id": "GDS2173_2" }, { "dataset_id": "GDS2173", "description": "voluntary running", "sample_id": [ "GSM114618", "GSM114619", "GSM114620", "GSM114621" ], "type": "protocol", "id": "GDS2173_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2173", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2173.tab", "compression": "gz" } ], [ [ "GDS2174.tab" ], { "title": "Infarcted heart response to captopril and 3,5-diiodothyropropionic acid", "description": "Analysis of infarcted left heart ventricle of Spraque-Dawley males following treatment with thyroid hormone analog 3,5-diiodothyropropionic acid (DITPA), or captopril followed by DITPA. Results provide insight into the effect of these drugs in congestive heart failure.", "type": "Expression profiling by array", "pubmed_id": "18030062", "platform": "GPL3801", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "18144", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE4963", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2174", "description": "control", "sample_id": [ "GSM111772", "GSM111823", "GSM111824", "GSM111825", "GSM111826", "GSM111827", "GSM111828", "GSM111829" ], "type": "disease state", "id": "GDS2174_1" }, { "dataset_id": "GDS2174", "description": "heart failure", "sample_id": [ "GSM111861", "GSM111863", "GSM111864", "GSM111865", "GSM111866", "GSM111867", "GSM111869", "GSM111870", "GSM112038", "GSM112039", "GSM112040", "GSM112041" ], "type": "disease state", "id": "GDS2174_2" }, { "dataset_id": "GDS2174", "description": "control", "sample_id": [ "GSM111772", "GSM111823", "GSM111824", "GSM111825", "GSM111826", "GSM111827", "GSM111828", "GSM111829" ], "type": "agent", "id": "GDS2174_3" }, { "dataset_id": "GDS2174", "description": "DITPA", "sample_id": [ "GSM111861", "GSM111863", "GSM111864", "GSM111865", "GSM111866", "GSM111867", "GSM111869", "GSM111870" ], "type": "agent", "id": "GDS2174_4" }, { "dataset_id": "GDS2174", "description": "captopril and DITPA", "sample_id": [ "GSM112038", "GSM112039", "GSM112040", "GSM112041" ], "type": "agent", "id": "GDS2174_5" } ], "taxid": "10116", "genes": 5284, "aggregation_function": "mean", "name": "GDS2174", "version": 1.0, "instances": "20", "variables": 5287, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2174.tab", "compression": "gz" } ], [ [ "GDS2175.tab" ], { "title": "Cockayne syndrome group B protein-null fibroblast rescue (HG-U133A)", "description": "Analysis of Cockayne syndrome group B (CSB) protein-null fibroblasts rescued by expression of CSB cDNA. CS, a neurodegenerative disorder, arises mostly from CSB defects. Results provide insight into how CSB defects cause CS.", "type": "Expression profiling by array", "pubmed_id": "16772382", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3407", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2175", "description": "eGFP mock rescue", "sample_id": [ "GSM76880", "GSM76882", "GSM76884" ], "type": "protocol", "id": "GDS2175_1" }, { "dataset_id": "GDS2175", "description": "CSB wild type rescue", "sample_id": [ "GSM76874", "GSM76876", "GSM76878" ], "type": "protocol", "id": "GDS2175_2" }, { "dataset_id": "GDS2175", "description": "CSB mutant rescue", "sample_id": [ "GSM76886", "GSM76888" ], "type": "protocol", "id": "GDS2175_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2175", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2175.tab", "compression": "gz" } ], [ [ "GDS2176.tab" ], { "title": "Cockayne syndrome group B protein-null fibroblast rescue (HG-U133B)", "description": "Analysis of Cockayne syndrome group B (CSB) protein-null fibroblasts rescued by expression of CSB cDNA. CS, a neurodegenerative disorder, arises mostly from CSB defects. Results provide insight into how CSB defects cause CS.", "type": "Expression profiling by array", "pubmed_id": "16772382", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3407", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2176", "description": "eGFP mock rescue", "sample_id": [ "GSM76881", "GSM76883", "GSM76885" ], "type": "protocol", "id": "GDS2176_1" }, { "dataset_id": "GDS2176", "description": "CSB wild type rescue", "sample_id": [ "GSM76875", "GSM76877", "GSM76879" ], "type": "protocol", "id": "GDS2176_2" }, { "dataset_id": "GDS2176", "description": "CSB mutant rescue", "sample_id": [ "GSM76887", "GSM76889" ], "type": "protocol", "id": "GDS2176_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2176", "version": 1.0, "instances": "8", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2176.tab", "compression": "gz" } ], [ [ "GDS2177.tab" ], { "title": "Type 1 diabetes model: autoimmune target organs (MG-U74A)", "description": "Analysis of pancreata and submandibular and lacrimal glands from 6-, 9-, and 15-week-old NOD/scid animals, respectively, before the onset of autoimmune destruction of the tissues. The NOD/scid animal is a model for type 1 diabetes. The three organs examined are autoimmune targets in type 1 diabetes.", "type": "Expression profiling by array", "pubmed_id": "16895987", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE4953", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2177", "description": "pancreas", "sample_id": [ "GSM111294", "GSM111295", "GSM111296", "GSM111297", "GSM111298", "GSM111299", "GSM111300", "GSM111301", "GSM111302", "GSM111303" ], "type": "tissue", "id": "GDS2177_1" }, { "dataset_id": "GDS2177", "description": "submandibular gland", "sample_id": [ "GSM111304", "GSM111305", "GSM111306", "GSM111307", "GSM111308", "GSM111309", "GSM111310", "GSM111311", "GSM111312", "GSM111313", "GSM111314", "GSM111315", "GSM111316", "GSM111317", "GSM111318", "GSM111319", "GSM111320", "GSM111321", "GSM111322", "GSM111323" ], "type": "tissue", "id": "GDS2177_2" }, { "dataset_id": "GDS2177", "description": "lacrimal gland", "sample_id": [ "GSM111324", "GSM111325", "GSM111326", "GSM111327", "GSM111328", "GSM111329", "GSM111330", "GSM111331", "GSM111332" ], "type": "tissue", "id": "GDS2177_3" }, { "dataset_id": "GDS2177", "description": "C57BL6 scid", "sample_id": [ "GSM111294", "GSM111295", "GSM111296", "GSM111297", "GSM111298", "GSM111304", "GSM111305", "GSM111306", "GSM111307", "GSM111308", "GSM111314", "GSM111315", "GSM111316", "GSM111317", "GSM111318", "GSM111324", "GSM111325", "GSM111326", "GSM111327", "GSM111328" ], "type": "strain", "id": "GDS2177_4" }, { "dataset_id": "GDS2177", "description": "NOD scid", "sample_id": [ "GSM111299", "GSM111300", "GSM111301", "GSM111302", "GSM111303", "GSM111309", "GSM111310", "GSM111311", "GSM111312", "GSM111313", "GSM111319", "GSM111320", "GSM111321", "GSM111322", "GSM111323", "GSM111329", "GSM111330", "GSM111331", "GSM111332" ], "type": "strain", "id": "GDS2177_5" }, { "dataset_id": "GDS2177", "description": "6 wk", "sample_id": [ "GSM111294", "GSM111295", "GSM111296", "GSM111297", "GSM111298", "GSM111299", "GSM111300", "GSM111301", "GSM111302", "GSM111303" ], "type": "age", "id": "GDS2177_6" }, { "dataset_id": "GDS2177", "description": "9 wk", "sample_id": [ "GSM111304", "GSM111305", "GSM111306", "GSM111307", "GSM111308", "GSM111309", "GSM111310", "GSM111311", "GSM111312", "GSM111313" ], "type": "age", "id": "GDS2177_7" }, { "dataset_id": "GDS2177", "description": "15 wk", "sample_id": [ "GSM111314", "GSM111315", "GSM111316", "GSM111317", "GSM111318", "GSM111319", "GSM111320", "GSM111321", "GSM111322", "GSM111323", "GSM111324", "GSM111325", "GSM111326", "GSM111327", "GSM111328", "GSM111329", "GSM111330", "GSM111331", "GSM111332" ], "type": "age", "id": "GDS2177_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2177", "version": 1.0, "instances": "39", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2177.tab", "compression": "gz" } ], [ [ "GDS2178.tab" ], { "title": "Type 1 diabetes model: autoimmune target organs (MG-U74B)", "description": "Analysis of pancreata and submandibular and lacrimal glands from 6-, 9-, and 15-week-old NOD/scid animals, respectively, before the onset of autoimmune destruction of the tissues. The NOD/scid animal is a model for type 1 diabetes. The three organs examined are autoimmune targets in type 1 diabetes.", "type": "Expression profiling by array", "pubmed_id": "16895987", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE4953", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2178", "description": "pancreas", "sample_id": [ "GSM111333", "GSM111334", "GSM111335", "GSM111336", "GSM111337", "GSM111338", "GSM111339", "GSM111340", "GSM111341", "GSM111342" ], "type": "tissue", "id": "GDS2178_1" }, { "dataset_id": "GDS2178", "description": "submandibular gland", "sample_id": [ "GSM111343", "GSM111344", "GSM111345", "GSM111346", "GSM111347", "GSM111348", "GSM111349", "GSM111350", "GSM111351", "GSM111352", "GSM111353", "GSM111354", "GSM111355", "GSM111356", "GSM111357", "GSM111358", "GSM111359", "GSM111360", "GSM111361", "GSM111362" ], "type": "tissue", "id": "GDS2178_2" }, { "dataset_id": "GDS2178", "description": "lacrimal gland", "sample_id": [ "GSM111363", "GSM111364", "GSM111365", "GSM111366", "GSM111367", "GSM111368", "GSM111369", "GSM111370", "GSM111371" ], "type": "tissue", "id": "GDS2178_3" }, { "dataset_id": "GDS2178", "description": "C57BL6 scid", "sample_id": [ "GSM111333", "GSM111334", "GSM111335", "GSM111336", "GSM111337", "GSM111343", "GSM111344", "GSM111345", "GSM111346", "GSM111347", "GSM111353", "GSM111354", "GSM111355", "GSM111356", "GSM111357", "GSM111363", "GSM111364", "GSM111365", "GSM111366", "GSM111367" ], "type": "strain", "id": "GDS2178_4" }, { "dataset_id": "GDS2178", "description": "NOD scid", "sample_id": [ "GSM111338", "GSM111339", "GSM111340", "GSM111341", "GSM111342", "GSM111348", "GSM111349", "GSM111350", "GSM111351", "GSM111352", "GSM111358", "GSM111359", "GSM111360", "GSM111361", "GSM111362", "GSM111368", "GSM111369", "GSM111370", "GSM111371" ], "type": "strain", "id": "GDS2178_5" }, { "dataset_id": "GDS2178", "description": "6 wk", "sample_id": [ "GSM111333", "GSM111334", "GSM111335", "GSM111336", "GSM111337", "GSM111338", "GSM111339", "GSM111340", "GSM111341", "GSM111342" ], "type": "age", "id": "GDS2178_6" }, { "dataset_id": "GDS2178", "description": "9 wk", "sample_id": [ "GSM111343", "GSM111344", "GSM111345", "GSM111346", "GSM111347", "GSM111348", "GSM111349", "GSM111350", "GSM111351", "GSM111352" ], "type": "age", "id": "GDS2178_7" }, { "dataset_id": "GDS2178", "description": "15 wk", "sample_id": [ "GSM111353", "GSM111354", "GSM111355", "GSM111356", "GSM111357", "GSM111358", "GSM111359", "GSM111360", "GSM111361", "GSM111362", "GSM111363", "GSM111364", "GSM111365", "GSM111366", "GSM111367", "GSM111368", "GSM111369", "GSM111370", "GSM111371" ], "type": "age", "id": "GDS2178_8" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2178", "version": 1.0, "instances": "39", "variables": 9257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2178.tab", "compression": "gz" } ], [ [ "GDS2179.tab" ], { "title": "Type 1 diabetes model: autoimmune target organs (MG-U74C)", "description": "Analysis of pancreata and submandibular and lacrimal glands from 6-, 9-, and 15-week-old NOD/scid animals, respectively, before the onset of autoimmune destruction of the tissues. The NOD/scid animal is a model for type 1 diabetes. The three organs examined are autoimmune targets in type 1 diabetes.", "type": "Expression profiling by array", "pubmed_id": "16895987", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE4953", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2179", "description": "pancreas", "sample_id": [ "GSM111372", "GSM111373", "GSM111374", "GSM111375", "GSM111376", "GSM111377", "GSM111378", "GSM111379", "GSM111380", "GSM111381" ], "type": "tissue", "id": "GDS2179_1" }, { "dataset_id": "GDS2179", "description": "submandibular gland", "sample_id": [ "GSM111382", "GSM111383", "GSM111384", "GSM111385", "GSM111386", "GSM111387", "GSM111388", "GSM111389", "GSM111390", "GSM111391", "GSM111392", "GSM111393", "GSM111394", "GSM111395", "GSM111396", "GSM111397", "GSM111398", "GSM111399", "GSM111400", "GSM111401" ], "type": "tissue", "id": "GDS2179_2" }, { "dataset_id": "GDS2179", "description": "lacrimal gland", "sample_id": [ "GSM111402", "GSM111403", "GSM111404", "GSM111405", "GSM111406", "GSM111407", "GSM111408", "GSM111409", "GSM111410" ], "type": "tissue", "id": "GDS2179_3" }, { "dataset_id": "GDS2179", "description": "C57BL6 scid", "sample_id": [ "GSM111372", "GSM111373", "GSM111374", "GSM111375", "GSM111376", "GSM111382", "GSM111383", "GSM111384", "GSM111385", "GSM111386", "GSM111392", "GSM111393", "GSM111394", "GSM111395", "GSM111396", "GSM111402", "GSM111403", "GSM111404", "GSM111405", "GSM111406" ], "type": "strain", "id": "GDS2179_4" }, { "dataset_id": "GDS2179", "description": "NOD scid", "sample_id": [ "GSM111377", "GSM111378", "GSM111379", "GSM111380", "GSM111381", "GSM111387", "GSM111388", "GSM111389", "GSM111390", "GSM111391", "GSM111397", "GSM111398", "GSM111399", "GSM111400", "GSM111401", "GSM111407", "GSM111408", "GSM111409", "GSM111410" ], "type": "strain", "id": "GDS2179_5" }, { "dataset_id": "GDS2179", "description": "6 wk", "sample_id": [ "GSM111372", "GSM111373", "GSM111374", "GSM111375", "GSM111376", "GSM111377", "GSM111378", "GSM111379", "GSM111380", "GSM111381" ], "type": "age", "id": "GDS2179_6" }, { "dataset_id": "GDS2179", "description": "9 wk", "sample_id": [ "GSM111382", "GSM111383", "GSM111384", "GSM111385", "GSM111386", "GSM111387", "GSM111388", "GSM111389", "GSM111390", "GSM111391" ], "type": "age", "id": "GDS2179_7" }, { "dataset_id": "GDS2179", "description": "15 wk", "sample_id": [ "GSM111392", "GSM111393", "GSM111394", "GSM111395", "GSM111396", "GSM111397", "GSM111398", "GSM111399", "GSM111400", "GSM111401", "GSM111402", "GSM111403", "GSM111404", "GSM111405", "GSM111406", "GSM111407", "GSM111408", "GSM111409", "GSM111410" ], "type": "age", "id": "GDS2179_8" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2179", "version": 1.0, "instances": "39", "variables": 9980, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2179.tab", "compression": "gz" } ], [ [ "GDS2180.tab" ], { "title": "M-CSF and GM-CSF differentiated macrophages response to bacillus Calmette-Guerin (Subset A)", "description": "Analysis of granulocyte-macrophage colony-stimulating factor (CSF) or macrophage-CSF differentiated macrophages stimulated with bacillus Calmette-Guerin. The two macrophage types differ in their resistance to mycobacterial infection. Results identify host resistance or susceptibility genes.", "type": "Expression profiling by array", "pubmed_id": "16412049", "platform": "GPL1293", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10368", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE3408", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2180", "description": "GM-CSF cultured macrophage", "sample_id": [ "GSM76894", "GSM76900", "GSM76897", "GSM76902" ], "type": "cell type", "id": "GDS2180_1" }, { "dataset_id": "GDS2180", "description": "M-CSF cultured macrophage", "sample_id": [ "GSM76898", "GSM76903", "GSM76899" ], "type": "cell type", "id": "GDS2180_2" }, { "dataset_id": "GDS2180", "description": "unstimulated", "sample_id": [ "GSM76894", "GSM76900", "GSM76898", "GSM76903" ], "type": "agent", "id": "GDS2180_3" }, { "dataset_id": "GDS2180", "description": "bacillus Calmette-Guerin", "sample_id": [ "GSM76899", "GSM76897", "GSM76902" ], "type": "agent", "id": "GDS2180_4" } ], "taxid": "9606", "genes": 9459, "aggregation_function": "mean", "name": "GDS2180", "version": 1.0, "instances": "7", "variables": 9462, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2180.tab", "compression": "gz" } ], [ [ "GDS2182.tab" ], { "title": "M-CSF and GM-CSF differentiated macrophages response to bacillus Calmette-Guerin (Subset B)", "description": "Analysis of granulocyte-macrophage colony-stimulating factor (CSF) or macrophage-CSF differentiated macrophages stimulated with bacillus Calmette-Guerin. The two macrophage types differ in their resistance to mycobacterial infection. Results identify host resistance or susceptibility genes.", "type": "Expression profiling by array", "pubmed_id": "16412049", "platform": "GPL1294", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10368", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE3408", "order": "none", "update_date": "Mar 11 2009", "subsets": [ { "dataset_id": "GDS2182", "description": "GM-CSF cultured macrophage", "sample_id": [ "GSM76905", "GSM76906", "GSM76909", "GSM76910" ], "type": "cell type", "id": "GDS2182_1" }, { "dataset_id": "GDS2182", "description": "M-CSF cultured macrophage", "sample_id": [ "GSM76907", "GSM76908", "GSM76911" ], "type": "cell type", "id": "GDS2182_2" }, { "dataset_id": "GDS2182", "description": "unstimulated", "sample_id": [ "GSM76905", "GSM76907", "GSM76909", "GSM76911" ], "type": "agent", "id": "GDS2182_3" }, { "dataset_id": "GDS2182", "description": "bacillus Calmette-Guerin", "sample_id": [ "GSM76906", "GSM76908", "GSM76910" ], "type": "agent", "id": "GDS2182_4" } ], "taxid": "9606", "genes": 7979, "aggregation_function": "mean", "name": "GDS2182", "version": 1.0, "instances": "7", "variables": 7982, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2182.tab", "compression": "gz" } ], [ [ "GDS2183.tab" ], { "title": "M-CSF and GM-CSF differentiated macrophages response to bacillus Calmette-Guerin (Subset C)", "description": "Analysis of granulocyte-macrophage colony-stimulating factor (CSF) or macrophage-CSF differentiated macrophages stimulated with bacillus Calmette-Guerin. The two macrophage types differ in their resistance to mycobacterial infection. Results identify host resistance or susceptibility genes.", "type": "Expression profiling by array", "pubmed_id": "16412049", "platform": "GPL1295", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10368", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE3408", "order": "none", "update_date": "Mar 11 2009", "subsets": [ { "dataset_id": "GDS2183", "description": "GM-CSF cultured macrophage", "sample_id": [ "GSM76912", "GSM76913", "GSM76916", "GSM76917" ], "type": "cell type", "id": "GDS2183_1" }, { "dataset_id": "GDS2183", "description": "M-CSF cultured macrophage", "sample_id": [ "GSM76914", "GSM76915", "GSM76918" ], "type": "cell type", "id": "GDS2183_2" }, { "dataset_id": "GDS2183", "description": "unstimulated", "sample_id": [ "GSM76912", "GSM76914", "GSM76916", "GSM76918" ], "type": "agent", "id": "GDS2183_3" }, { "dataset_id": "GDS2183", "description": "bacillus Calmette-Guerin", "sample_id": [ "GSM76913", "GSM76915", "GSM76917" ], "type": "agent", "id": "GDS2183_4" } ], "taxid": "9606", "genes": 9687, "aggregation_function": "mean", "name": "GDS2183", "version": 1.0, "instances": "7", "variables": 9690, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2183.tab", "compression": "gz" } ], [ [ "GDS2184.tab" ], { "title": "Runt-related transcription factor 2 null mutation effect on the embryonal bone (MG-U74A)", "description": "Analysis of embryonic day 14.5 humeri of runt-related transcription factor 2 (Runx2) deficient animals. Runx2 is an essential factor for skeletogenesis and heterozygous loss causes cleidocranial dysplasia. Results provide insight into the molecular mechanisms underlying skeletogenesis.", "type": "Expression profiling by array", "pubmed_id": "16829211", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4911", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2184", "description": "wild type", "sample_id": [ "GSM110240", "GSM110241" ], "type": "genotype/variation", "id": "GDS2184_1" }, { "dataset_id": "GDS2184", "description": "Runx2 null mutant", "sample_id": [ "GSM110242", "GSM110243" ], "type": "genotype/variation", "id": "GDS2184_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2184", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2184.tab", "compression": "gz" } ], [ [ "GDS2185.tab" ], { "title": "Runt-related transcription factor 2 null mutation effect on the embryonal bone (MG-U74B)", "description": "Analysis of embryonic day 14.5 humeri of runt-related transcription factor 2 (Runx2) deficient animals. Runx2 is an essential factor for skeletogenesis and heterozygous loss causes cleidocranial dysplasia. Results provide insight into the molecular mechanisms underlying skeletogenesis.", "type": "Expression profiling by array", "pubmed_id": "16829211", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4911", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2185", "description": "wild type", "sample_id": [ "GSM110244", "GSM110245" ], "type": "genotype/variation", "id": "GDS2185_1" }, { "dataset_id": "GDS2185", "description": "Runx2 null mutant", "sample_id": [ "GSM110246", "GSM110247" ], "type": "genotype/variation", "id": "GDS2185_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2185", "version": 1.0, "instances": "4", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2185.tab", "compression": "gz" } ], [ [ "GDS2186.tab" ], { "title": "Runt-related transcription factor 2 null mutation effect on the embryonal bone (MG-U74C)", "description": "Analysis of embryonic day 14.5 humeri of runt-related transcription factor 2 (Runx2) deficient animals. Runx2 is an essential factor for skeletogenesis and heterozygous loss causes cleidocranial dysplasia. Results provide insight into the molecular mechanisms underlying skeletogenesis.", "type": "Expression profiling by array", "pubmed_id": "16829211", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4911", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2186", "description": "wild type", "sample_id": [ "GSM110248", "GSM110249" ], "type": "genotype/variation", "id": "GDS2186_1" }, { "dataset_id": "GDS2186", "description": "Runx2 null mutant", "sample_id": [ "GSM110250", "GSM110251" ], "type": "genotype/variation", "id": "GDS2186_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2186", "version": 1.0, "instances": "4", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2186.tab", "compression": "gz" } ], [ [ "GDS2187.tab" ], { "title": "Triple-fusion reporter gene effect on embryonic stem cells", "description": "Analysis of embryonic stem (ES) cells stably-transduced with a triple-fusion (TF) construct consisting of fluorescence, bioluminescence, and positron emission tomography reporter genes. Results provide insight into the feasibility of using the TF construct to track cells in vivo.", "type": "Expression profiling by array", "pubmed_id": "16390873", "platform": "GPL1307", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21446", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE3432", "order": "none", "update_date": "Aug 25 2006", "subsets": [ { "dataset_id": "GDS2187", "description": "control", "sample_id": [ "GSM77334", "GSM77335", "GSM77336", "GSM77337" ], "type": "protocol", "id": "GDS2187_1" }, { "dataset_id": "GDS2187", "description": "triple-fusion transfected", "sample_id": [ "GSM77338", "GSM77339", "GSM77340" ], "type": "protocol", "id": "GDS2187_2" } ], "taxid": "10090", "genes": 17738, "aggregation_function": "mean", "name": "GDS2187", "version": 1.0, "instances": "7", "variables": 17740, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2187.tab", "compression": "gz" } ], [ [ "GDS2188.tab" ], { "title": "Lung response to cigarette smoke: dose response and time course (PIQOR)", "description": "Analysis of lungs of animals exposed to 300 or 600 ug total particulate matter (TPM)/l of cigarette smoke (CS) for up to 13 weeks and allowed to recover 2, 6, or 20 hours after the last exposure. Results provide insight into mechanisms involved in the onset and development of CS-related diseases.", "type": "Expression profiling by array", "pubmed_id": "16870687", "platform": "GPL3607", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "11994", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log2 ratio", "reference_series": "GSE4644", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2188", "description": "300 ug TPM/l", "sample_id": [ "GSM103291", "GSM104355", "GSM104357", "GSM104359", "GSM104361", "GSM104377", "GSM104380", "GSM104381", "GSM104395" ], "type": "dose", "id": "GDS2188_1" }, { "dataset_id": "GDS2188", "description": "600 ug TPM/l", "sample_id": [ "GSM104354", "GSM104356", "GSM104358", "GSM104360", "GSM104375", "GSM104378", "GSM104382", "GSM104393", "GSM104396" ], "type": "dose", "id": "GDS2188_2" }, { "dataset_id": "GDS2188", "description": "2 wk", "sample_id": [ "GSM103291", "GSM104354", "GSM104355", "GSM104356", "GSM104357", "GSM104358" ], "type": "time", "id": "GDS2188_3" }, { "dataset_id": "GDS2188", "description": "7 wk", "sample_id": [ "GSM104359", "GSM104360", "GSM104361", "GSM104375", "GSM104377", "GSM104378" ], "type": "time", "id": "GDS2188_4" }, { "dataset_id": "GDS2188", "description": "13 wk", "sample_id": [ "GSM104380", "GSM104381", "GSM104382", "GSM104393", "GSM104395", "GSM104396" ], "type": "time", "id": "GDS2188_5" }, { "dataset_id": "GDS2188", "description": "2 h after exposure", "sample_id": [ "GSM103291", "GSM104354", "GSM104359", "GSM104360", "GSM104380", "GSM104382" ], "type": "protocol", "id": "GDS2188_6" }, { "dataset_id": "GDS2188", "description": "6 h after exposure", "sample_id": [ "GSM104355", "GSM104356", "GSM104361", "GSM104375", "GSM104381", "GSM104393" ], "type": "protocol", "id": "GDS2188_7" }, { "dataset_id": "GDS2188", "description": "20 after exposure", "sample_id": [ "GSM104357", "GSM104358", "GSM104377", "GSM104378", "GSM104395", "GSM104396" ], "type": "protocol", "id": "GDS2188_8" } ], "taxid": "10116", "genes": 6234, "aggregation_function": "mean", "name": "GDS2188", "version": 1.0, "instances": "18", "variables": 6238, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2188.tab", "compression": "gz" } ], [ [ "GDS2189.tab" ], { "title": "BRCA1/CtIP/ZBRK1 repressor complex depletion effect on mammary epithelial cells", "description": "Analysis of MCF10A mammary epithelial cells (MECs) in 3D culture following depletion of the BRCA1/CtIP/ZBRK1 repressor complex using BRCA1 or CtIP RNAi. Results provide insight into the molecular mechanisms underlying the accelerated mammary tumor growth correlated with impaired BRCA1 function.", "type": "Expression profiling by array", "pubmed_id": "16843262", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4754", "order": "none", "update_date": "Mar 21 2007", "subsets": [ { "dataset_id": "GDS2189", "description": "BRCA1 control", "sample_id": [ "GSM106971", "GSM106972" ], "type": "agent", "id": "GDS2189_1" }, { "dataset_id": "GDS2189", "description": "BRCA1 RNAi", "sample_id": [ "GSM106933", "GSM106968" ], "type": "agent", "id": "GDS2189_2" }, { "dataset_id": "GDS2189", "description": "CtIP control", "sample_id": [ "GSM106976", "GSM106977" ], "type": "agent", "id": "GDS2189_3" }, { "dataset_id": "GDS2189", "description": "CtIP RNAi", "sample_id": [ "GSM106974", "GSM106975" ], "type": "agent", "id": "GDS2189_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2189", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2189.tab", "compression": "gz" } ], [ [ "GDS2190.tab" ], { "title": "Bipolar disorder: dorsolateral prefrontal cortex", "description": "Analysis of postmortem dorsolateral prefrontal cortex from 30 adults with bipolar disorder. Results provide insight into the pathophysiology of the disease.", "type": "Expression profiling by array", "pubmed_id": "16894394", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "61", "value_type": "count", "reference_series": "GSE5388", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2190", "description": "control", "sample_id": [ "GSM123212", "GSM123213", "GSM123214", "GSM123215", "GSM123216", "GSM123217", "GSM123218", "GSM123219", "GSM123220", "GSM123221", "GSM123222", "GSM123223", "GSM123224", "GSM123225", "GSM123226", "GSM123227", "GSM123228", "GSM123229", "GSM123230", "GSM123231", "GSM123232", "GSM123233", "GSM123234", "GSM123235", "GSM123236", "GSM123237", "GSM123238", "GSM123239", "GSM123240", "GSM123241", "GSM123242" ], "type": "disease state", "id": "GDS2190_1" }, { "dataset_id": "GDS2190", "description": "bipolar disorder", "sample_id": [ "GSM123182", "GSM123183", "GSM123184", "GSM123185", "GSM123186", "GSM123187", "GSM123188", "GSM123189", "GSM123190", "GSM123191", "GSM123192", "GSM123193", "GSM123194", "GSM123195", "GSM123196", "GSM123197", "GSM123198", "GSM123199", "GSM123200", "GSM123201", "GSM123202", "GSM123203", "GSM123204", "GSM123205", "GSM123206", "GSM123207", "GSM123208", "GSM123209", "GSM123210", "GSM123211" ], "type": "disease state", "id": "GDS2190_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2190", "version": 1.0, "instances": "61", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2190.tab", "compression": "gz" } ], [ [ "GDS2191.tab" ], { "title": "Bipolar disorder: orbitofrontal cortex", "description": "Analysis of postmortem orbitofrontal cortex from 10 adults with bipolar disorder. Results provide insight into the pathophysiology of the disease.", "type": "Expression profiling by array", "pubmed_id": "16894394", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE5389", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2191", "description": "control", "sample_id": [ "GSM123253", "GSM123254", "GSM123255", "GSM123256", "GSM123257", "GSM123258", "GSM123259", "GSM123260", "GSM123261", "GSM123262", "GSM123263" ], "type": "disease state", "id": "GDS2191_1" }, { "dataset_id": "GDS2191", "description": "bipolar disorder", "sample_id": [ "GSM123243", "GSM123244", "GSM123245", "GSM123246", "GSM123247", "GSM123248", "GSM123249", "GSM123250", "GSM123251", "GSM123252" ], "type": "disease state", "id": "GDS2191_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2191", "version": 1.0, "instances": "21", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2191.tab", "compression": "gz" } ], [ [ "GDS2192.tab" ], { "title": "Titin mutation effect on embryonic muscles", "description": "Analysis of trunk and tail muscles of runzel (ruz) mutant embryos at 3.5 days post fertilization (dpf). Ruz mutants carry a mutation in the titin gene resulting in muscle degeneration and embryonic lethality. Results provide insight into the pathogenesis of titin muscular dystrophy.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4585", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2192", "description": "wild type", "sample_id": [ "GSM102669", "GSM102671", "GSM102674" ], "type": "genotype/variation", "id": "GDS2192_1" }, { "dataset_id": "GDS2192", "description": "titin mutant", "sample_id": [ "GSM102665", "GSM102666", "GSM102667" ], "type": "genotype/variation", "id": "GDS2192_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2192", "version": 1.0, "instances": "6", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2192.tab", "compression": "gz" } ], [ [ "GDS2193.tab" ], { "title": "Sry-related high mobility group box 4 knockdown effect on adenoid cystic carcinoma cells", "description": "Analysis of adenoid cystic carcinoma (ACC) derived cells (ACC3) following RNAi knockdown of Sry-related high mobility group box 4 (Sox4). Sox4 is one of the most upregulated genes in ACC. Results provide insight into the role of Sox4 in the pathogenesis of ACC.", "type": "Expression profiling by array", "pubmed_id": "16636670", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4225", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2193", "description": "control", "sample_id": [ "GSM96347", "GSM96348", "GSM96349" ], "type": "agent", "id": "GDS2193_1" }, { "dataset_id": "GDS2193", "description": "Sox4 RNAi", "sample_id": [ "GSM96350", "GSM96351", "GSM96352" ], "type": "agent", "id": "GDS2193_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2193", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2193.tab", "compression": "gz" } ], [ [ "GDS2194.tab" ], { "title": "Lung response to cigarette smoke: dose response (RAE230A)", "description": "Analysis of lungs of animals exposed to 300 or 600 ug total particulate matter (TPM)/l of cigarette smoke (CS) for 13 weeks and allowed to recover 2, 6, or 20 hours after the last exposure. Results provide insight into mechanisms involved in the onset and development of CS-related diseases.", "type": "Expression profiling by array", "pubmed_id": "16870687", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4516", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2194", "description": "control", "sample_id": [ "GSM101352", "GSM101355", "GSM101358" ], "type": "agent", "id": "GDS2194_1" }, { "dataset_id": "GDS2194", "description": "cigarette smoke", "sample_id": [ "GSM101353", "GSM101354", "GSM101356", "GSM101357", "GSM101359", "GSM101360" ], "type": "agent", "id": "GDS2194_2" }, { "dataset_id": "GDS2194", "description": "sham", "sample_id": [ "GSM101352", "GSM101355", "GSM101358" ], "type": "dose", "id": "GDS2194_3" }, { "dataset_id": "GDS2194", "description": "300 ug TPM/l", "sample_id": [ "GSM101353", "GSM101356", "GSM101359" ], "type": "dose", "id": "GDS2194_4" }, { "dataset_id": "GDS2194", "description": "600 ug TPM/l", "sample_id": [ "GSM101354", "GSM101357", "GSM101360" ], "type": "dose", "id": "GDS2194_5" }, { "dataset_id": "GDS2194", "description": "2 h after exposure", "sample_id": [ "GSM101352", "GSM101353", "GSM101354" ], "type": "protocol", "id": "GDS2194_6" }, { "dataset_id": "GDS2194", "description": "6 h after exposure", "sample_id": [ "GSM101355", "GSM101356", "GSM101357" ], "type": "protocol", "id": "GDS2194_7" }, { "dataset_id": "GDS2194", "description": "20 h after exposure", "sample_id": [ "GSM101358", "GSM101359", "GSM101360" ], "type": "protocol", "id": "GDS2194_8" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2194", "version": 1.0, "instances": "9", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2194.tab", "compression": "gz" } ], [ [ "GDS2195.tab" ], { "title": "Lung response to cigarette smoke: dose response (RAE230B)", "description": "Analysis of lungs of animals exposed to 300 or 600 ug total particulate matter (TPM)/l of cigarette smoke (CS) for 13 weeks and allowed to recover 2, 6, or 20 hours after the last exposure. Results provide insight into mechanisms involved in the onset and development of CS-related diseases.", "type": "Expression profiling by array", "pubmed_id": "16870687", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4516", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2195", "description": "control", "sample_id": [ "GSM101361", "GSM101364", "GSM101367" ], "type": "agent", "id": "GDS2195_1" }, { "dataset_id": "GDS2195", "description": "cigarette smoke", "sample_id": [ "GSM101362", "GSM101363", "GSM101365", "GSM101366", "GSM101368", "GSM101369" ], "type": "agent", "id": "GDS2195_2" }, { "dataset_id": "GDS2195", "description": "sham", "sample_id": [ "GSM101361", "GSM101364", "GSM101367" ], "type": "dose", "id": "GDS2195_3" }, { "dataset_id": "GDS2195", "description": "300 ug TPM/l", "sample_id": [ "GSM101362", "GSM101365", "GSM101368" ], "type": "dose", "id": "GDS2195_4" }, { "dataset_id": "GDS2195", "description": "600 ug TPM/l", "sample_id": [ "GSM101363", "GSM101366", "GSM101369" ], "type": "dose", "id": "GDS2195_5" }, { "dataset_id": "GDS2195", "description": "2 h after exposure", "sample_id": [ "GSM101361", "GSM101362", "GSM101363" ], "type": "protocol", "id": "GDS2195_6" }, { "dataset_id": "GDS2195", "description": "6 h after exposure", "sample_id": [ "GSM101364", "GSM101365", "GSM101366" ], "type": "protocol", "id": "GDS2195_7" }, { "dataset_id": "GDS2195", "description": "20 h after exposure", "sample_id": [ "GSM101367", "GSM101368", "GSM101369" ], "type": "protocol", "id": "GDS2195_8" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS2195", "version": 1.0, "instances": "9", "variables": 13322, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2195.tab", "compression": "gz" } ], [ [ "GDS2196.tab" ], { "title": "Saponin treatment effect: time course", "description": "Analysis of yeast cells for up to 3 days after treatment with the saponins alpha-tomatine or tomatidine or the sterol biosynthesis inhibitor fenpropimorph. Saponins are glycoside compounds accumulated by many plant species, and possess antimicrobial activity and various pharmacological properties.", "type": "Expression profiling by array", "pubmed_id": "16870766", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4669", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2196", "description": "control", "sample_id": [ "GSM105336", "GSM105340", "GSM105344" ], "type": "agent", "id": "GDS2196_1" }, { "dataset_id": "GDS2196", "description": "fenpropimorph", "sample_id": [ "GSM105335", "GSM105339", "GSM105343" ], "type": "agent", "id": "GDS2196_2" }, { "dataset_id": "GDS2196", "description": "alpha-tomatine", "sample_id": [ "GSM105333", "GSM105337", "GSM105341" ], "type": "agent", "id": "GDS2196_3" }, { "dataset_id": "GDS2196", "description": "tomatidine", "sample_id": [ "GSM105334", "GSM105338", "GSM105342" ], "type": "agent", "id": "GDS2196_4" }, { "dataset_id": "GDS2196", "description": "1 d", "sample_id": [ "GSM105333", "GSM105334", "GSM105335", "GSM105336" ], "type": "time", "id": "GDS2196_5" }, { "dataset_id": "GDS2196", "description": "2 d", "sample_id": [ "GSM105337", "GSM105338", "GSM105339", "GSM105340" ], "type": "time", "id": "GDS2196_6" }, { "dataset_id": "GDS2196", "description": "3 d", "sample_id": [ "GSM105341", "GSM105342", "GSM105343", "GSM105344" ], "type": "time", "id": "GDS2196_7" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2196", "version": 1.0, "instances": "12", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2196.tab", "compression": "gz" } ], [ [ "GDS2197.tab" ], { "title": "Trans-10, cis-12 conjugated linoleic acid delipidiative effect on white adipose tissues: time course", "description": "Analysis of retroperitoneal white adipose tissue (WAT) of C57BL/6J males fed a diet containing 0.5% trans-10 ,cis-12 conjugated linoleic acid (t10c12 CLA) for up to 17 days. Results provide insight into the mechanisms underlying the reduction in fat content of mice WAT in response to t10c12 CLA.", "type": "Expression profiling by array", "pubmed_id": "16868072", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE4671", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2197", "description": "control", "sample_id": [ "GSM105365", "GSM105366", "GSM105369", "GSM105370", "GSM105373", "GSM105374", "GSM105377", "GSM105378", "GSM105381", "GSM105382", "GSM105385", "GSM105386", "GSM105389", "GSM105390" ], "type": "agent", "id": "GDS2197_1" }, { "dataset_id": "GDS2197", "description": "trans-10, cis-12 conjugated linoleic acid", "sample_id": [ "GSM105363", "GSM105364", "GSM105367", "GSM105368", "GSM105371", "GSM105372", "GSM105375", "GSM105376", "GSM105379", "GSM105380", "GSM105383", "GSM105384", "GSM105387", "GSM105388" ], "type": "agent", "id": "GDS2197_2" }, { "dataset_id": "GDS2197", "description": "1 d", "sample_id": [ "GSM105363", "GSM105364", "GSM105365", "GSM105366" ], "type": "time", "id": "GDS2197_3" }, { "dataset_id": "GDS2197", "description": "2 d", "sample_id": [ "GSM105367", "GSM105368", "GSM105369", "GSM105370" ], "type": "time", "id": "GDS2197_4" }, { "dataset_id": "GDS2197", "description": "3 d", "sample_id": [ "GSM105371", "GSM105372", "GSM105373", "GSM105374" ], "type": "time", "id": "GDS2197_5" }, { "dataset_id": "GDS2197", "description": "4 d", "sample_id": [ "GSM105375", "GSM105376", "GSM105377", "GSM105378" ], "type": "time", "id": "GDS2197_6" }, { "dataset_id": "GDS2197", "description": "7 d", "sample_id": [ "GSM105379", "GSM105380", "GSM105381", "GSM105382" ], "type": "time", "id": "GDS2197_7" }, { "dataset_id": "GDS2197", "description": "10 d", "sample_id": [ "GSM105383", "GSM105384", "GSM105385", "GSM105386" ], "type": "time", "id": "GDS2197_8" }, { "dataset_id": "GDS2197", "description": "17 d", "sample_id": [ "GSM105387", "GSM105388", "GSM105389", "GSM105390" ], "type": "time", "id": "GDS2197_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2197", "version": 1.0, "instances": "28", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2197.tab", "compression": "gz" } ], [ [ "GDS2200.tab" ], { "title": "Non-melanoma skin cancer", "description": "Analysis of normal skin, actinic keratotic (AK) lesion, and squamous cell carcinoma (SCC) tumor biopsies from 5 patients with non-melanoma skin cancer (NMSC). Results provide insight into the molecular pathogenesis of NMSC.", "type": "Expression profiling by array", "pubmed_id": [ "16893473", "20231500" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2503", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2200", "description": "normal", "sample_id": [ "GSM47616", "GSM47617", "GSM47618", "GSM47619", "GSM47620", "GSM47621" ], "type": "disease state", "id": "GDS2200_1" }, { "dataset_id": "GDS2200", "description": "actinic keratosis", "sample_id": [ "GSM47612", "GSM47613", "GSM47614", "GSM47615" ], "type": "disease state", "id": "GDS2200_2" }, { "dataset_id": "GDS2200", "description": "squamous cell carcinoma", "sample_id": [ "GSM47622", "GSM47623", "GSM47624", "GSM47625", "GSM47626" ], "type": "disease state", "id": "GDS2200_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2200", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2200.tab", "compression": "gz" } ], [ [ "GDS2201.tab" ], { "title": "Serrated and conventional adenocarcinomas", "description": "Comparison of serrated and conventional colorectal adenocarcinoma tumor samples. Results differentiate serrated from conventional colorectal carcinomas (CRC) and provide insight into the molecular pathogenesis of serrated CRC.", "type": "Expression profiling by array", "pubmed_id": "16819509", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE4045", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2201", "description": "serrated colerectal carcinoma", "sample_id": [ "GSM92240", "GSM92241", "GSM92242", "GSM92243", "GSM92244", "GSM92245", "GSM92246", "GSM92247" ], "type": "disease state", "id": "GDS2201_1" }, { "dataset_id": "GDS2201", "description": "conventional colorectal carcinoma", "sample_id": [ "GSM92248", "GSM92249", "GSM92250", "GSM92251", "GSM92252", "GSM92253", "GSM92254", "GSM92255", "GSM92256", "GSM92257", "GSM92258", "GSM92259", "GSM92260", "GSM92261", "GSM92262", "GSM92263", "GSM92264", "GSM92265", "GSM92266", "GSM92267", "GSM92268", "GSM92269", "GSM92270", "GSM92271", "GSM92272", "GSM92273", "GSM92274", "GSM92275", "GSM92276" ], "type": "disease state", "id": "GDS2201_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2201", "version": 1.0, "instances": "37", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2201.tab", "compression": "gz" } ], [ [ "GDS2202.tab" ], { "title": "Epididymis development", "description": "Analysis of the epidididymis of animals at various ages from gestational day 12 to post-natal day 2. Results provide insight into the molecular events involved in testicular development.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE5333", "order": "none", "update_date": "Jul 31 2006", "subsets": [ { "dataset_id": "GDS2202", "description": "reference", "sample_id": [ "GSM120837" ], "type": "tissue", "id": "GDS2202_1" }, { "dataset_id": "GDS2202", "description": "epididymis", "sample_id": [ "GSM120822", "GSM120823", "GSM120824", "GSM120825", "GSM120826", "GSM120827", "GSM120828", "GSM120829", "GSM120830", "GSM120831", "GSM120832", "GSM120833", "GSM120834", "GSM120835", "GSM120836" ], "type": "tissue", "id": "GDS2202_2" }, { "dataset_id": "GDS2202", "description": "gestational day 12", "sample_id": [ "GSM120834", "GSM120835", "GSM120836" ], "type": "age", "id": "GDS2202_3" }, { "dataset_id": "GDS2202", "description": "gestational day 14", "sample_id": [ "GSM120831", "GSM120832", "GSM120833" ], "type": "age", "id": "GDS2202_4" }, { "dataset_id": "GDS2202", "description": "gestational day 16", "sample_id": [ "GSM120828", "GSM120829", "GSM120830" ], "type": "age", "id": "GDS2202_5" }, { "dataset_id": "GDS2202", "description": "gestational day 18", "sample_id": [ "GSM120825", "GSM120826", "GSM120827" ], "type": "age", "id": "GDS2202_6" }, { "dataset_id": "GDS2202", "description": "postnatal day 0.5", "sample_id": [ "GSM120837" ], "type": "age", "id": "GDS2202_7" }, { "dataset_id": "GDS2202", "description": "postnatal day 2", "sample_id": [ "GSM120822", "GSM120823", "GSM120824" ], "type": "age", "id": "GDS2202_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2202", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2202.tab", "compression": "gz" } ], [ [ "GDS2203.tab" ], { "title": "Ovary development", "description": "Analysis of the ovary of animals at various ages from gestational day 12 to post-natal day 2. Results provide insight into the molecular events involved in ovary development.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE5334", "order": "none", "update_date": "Jul 31 2006", "subsets": [ { "dataset_id": "GDS2203", "description": "reference", "sample_id": [ "GSM120857" ], "type": "tissue", "id": "GDS2203_1" }, { "dataset_id": "GDS2203", "description": "ovary", "sample_id": [ "GSM120839", "GSM120840", "GSM120841", "GSM120842", "GSM120843", "GSM120844", "GSM120845", "GSM120846", "GSM120847", "GSM120848", "GSM120849", "GSM120850", "GSM120851", "GSM120852", "GSM120853", "GSM120854", "GSM120855", "GSM120856" ], "type": "tissue", "id": "GDS2203_2" }, { "dataset_id": "GDS2203", "description": "gestational day 11", "sample_id": [ "GSM120854", "GSM120855", "GSM120856" ], "type": "age", "id": "GDS2203_3" }, { "dataset_id": "GDS2203", "description": "gestational day 12", "sample_id": [ "GSM120851", "GSM120852", "GSM120853" ], "type": "age", "id": "GDS2203_4" }, { "dataset_id": "GDS2203", "description": "gestational day 14", "sample_id": [ "GSM120848", "GSM120849", "GSM120850" ], "type": "age", "id": "GDS2203_5" }, { "dataset_id": "GDS2203", "description": "gestational day 16", "sample_id": [ "GSM120845", "GSM120846", "GSM120847" ], "type": "age", "id": "GDS2203_6" }, { "dataset_id": "GDS2203", "description": "gestational day 18", "sample_id": [ "GSM120842", "GSM120843", "GSM120844" ], "type": "age", "id": "GDS2203_7" }, { "dataset_id": "GDS2203", "description": "postnatal day 0.5", "sample_id": [ "GSM120857" ], "type": "age", "id": "GDS2203_8" }, { "dataset_id": "GDS2203", "description": "postnatal day 2", "sample_id": [ "GSM120839", "GSM120840", "GSM120841" ], "type": "age", "id": "GDS2203_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2203", "version": 1.0, "instances": "19", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2203.tab", "compression": "gz" } ], [ [ "GDS2204.tab" ], { "title": "Universal reference RNA in various amounts", "description": "Analysis of 1, 2, 5 or 10 ug of Stratagene universal human reference RNA as starting material. Results provide insight into the influence of starting RNA quantity on the subsequent gene expression signal measured from a microarray.", "type": "Expression profiling by array", "pubmed_id": "16776839", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3062", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2204", "description": "1 ug", "sample_id": [ "GSM67180", "GSM67182", "GSM67183", "GSM67189", "GSM67190", "GSM67191" ], "type": "protocol", "id": "GDS2204_1" }, { "dataset_id": "GDS2204", "description": "2 ug", "sample_id": [ "GSM67176", "GSM67240" ], "type": "protocol", "id": "GDS2204_2" }, { "dataset_id": "GDS2204", "description": "5 ug", "sample_id": [ "GSM67186", "GSM67195" ], "type": "protocol", "id": "GDS2204_3" }, { "dataset_id": "GDS2204", "description": "10 ug", "sample_id": [ "GSM67178", "GSM67188" ], "type": "protocol", "id": "GDS2204_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2204", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2204.tab", "compression": "gz" } ], [ [ "GDS2205.tab" ], { "title": "Dilated cardiomyopathy: left ventricle", "description": "Comparison of subendocardial left ventricular tissue samples from 7 patients with dilated cardiomyopathy (DCM) to those from 5 patients with non-failing (NF) hearts. DCM is a common cause of heart failure. Results contribute to the identification of a gene expression signature for DCM.", "type": "Expression profiling by array", "pubmed_id": "17045896", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE3585", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2205", "description": "non-failing", "sample_id": [ "GSM82381", "GSM82382", "GSM82383", "GSM82384", "GSM82385" ], "type": "disease state", "id": "GDS2205_1" }, { "dataset_id": "GDS2205", "description": "dilated cardiomyopathy", "sample_id": [ "GSM82386", "GSM82387", "GSM82388", "GSM82389", "GSM82390", "GSM82391", "GSM82392" ], "type": "disease state", "id": "GDS2205_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2205", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2205.tab", "compression": "gz" } ], [ [ "GDS2206.tab" ], { "title": "Dilated cardiomyopathy: septum", "description": "Comparison of septal myocardial tissue samples from 13 patients with dilated cardiomyopathy (DCM) to those from 15 patients with non-failing (NF) hearts. DCM is a common cause of heart failure. Results contribute to the identification of a gene expression signature for DCM.", "type": "Expression profiling by array", "pubmed_id": "17045896", "platform": "GPL3050", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37530", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log2 ratio", "reference_series": "GSE3586", "order": "none", "update_date": "Mar 22 2007", "subsets": [ { "dataset_id": "GDS2206", "description": "non-failing", "sample_id": [ "GSM82393", "GSM82394", "GSM82395", "GSM82396", "GSM82397", "GSM82398", "GSM82399", "GSM82400", "GSM82401", "GSM82402", "GSM82403", "GSM82404", "GSM82405", "GSM82406", "GSM82407" ], "type": "disease state", "id": "GDS2206_1" }, { "dataset_id": "GDS2206", "description": "dilated cardiomyopathy", "sample_id": [ "GSM82408", "GSM82409", "GSM82410", "GSM82411", "GSM82412", "GSM82413", "GSM82414", "GSM82415", "GSM82416", "GSM82417", "GSM82418", "GSM82419", "GSM82420" ], "type": "disease state", "id": "GDS2206_2" } ], "taxid": "9606", "genes": 25302, "aggregation_function": "mean", "name": "GDS2206", "version": 1.0, "instances": "28", "variables": 25304, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2206.tab", "compression": "gz" } ], [ [ "GDS2207.tab" ], { "title": "Salicylic acid effect on leaves", "description": "Analysis of leaves 2 hours after treatment with salicylic acid (SA) which induces systemic acquired resistance (SAR). SA-induced genes examined for the presence of neighboring putative binding sites for the transcription factor TGA2. Results provide insight into role of TGA factors in triggering SAR", "type": "Expression profiling by array", "pubmed_id": "16824183", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE3984", "order": "none", "update_date": "Mar 23 2007", "subsets": [ { "dataset_id": "GDS2207", "description": "control", "sample_id": [ "GSM90867", "GSM90868", "GSM90869" ], "type": "agent", "id": "GDS2207_1" }, { "dataset_id": "GDS2207", "description": "salicylic acid", "sample_id": [ "GSM90870", "GSM90871", "GSM90872" ], "type": "agent", "id": "GDS2207_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2207", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2207.tab", "compression": "gz" } ], [ [ "GDS2208.tab" ], { "title": "Estradiol effect on the uterus: time course", "description": "Expression profiling of uteri from ovariectomized C57BL/6 animals at various time points up to 24 hours following treatment with estradiol (E2). E2 plays a critical role in regulating the growth, differentiation, and secretory function of the uterus.", "type": "Expression profiling by array", "pubmed_id": "12893882", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log10 ratio", "reference_series": "GSE4664", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2208", "description": "0.5 h", "sample_id": [ "GSM105232", "GSM105233" ], "type": "time", "id": "GDS2208_1" }, { "dataset_id": "GDS2208", "description": "2 h", "sample_id": [ "GSM105234", "GSM105235" ], "type": "time", "id": "GDS2208_2" }, { "dataset_id": "GDS2208", "description": "6 h", "sample_id": [ "GSM105236", "GSM105237" ], "type": "time", "id": "GDS2208_3" }, { "dataset_id": "GDS2208", "description": "12 h", "sample_id": [ "GSM105238", "GSM105239" ], "type": "time", "id": "GDS2208_4" }, { "dataset_id": "GDS2208", "description": "24 h", "sample_id": [ "GSM105240", "GSM105241" ], "type": "time", "id": "GDS2208_5" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS2208", "version": 1.0, "instances": "10", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2208.tab", "compression": "gz" } ], [ [ "GDS2209.tab" ], { "title": "Spinal cord and dorsal root ganglion", "description": "Analysis of spinal cord (SC) and dorsal root ganglion (DRG). The central nervous system (CNS) comprises the brain and SC; the peripheral nervous system (PNS) includes spinal and cranial nerves along with their associated DRGs. Results identify gene expression differences between the CNS and the PNS.", "type": "Expression profiling by array", "pubmed_id": "16824496", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5425", "order": "none", "update_date": "Mar 23 2007", "subsets": [ { "dataset_id": "GDS2209", "description": "spinal cord", "sample_id": [ "GSM124417", "GSM124418", "GSM124419" ], "type": "tissue", "id": "GDS2209_1" }, { "dataset_id": "GDS2209", "description": "dorsal root ganglion", "sample_id": [ "GSM124414", "GSM124415", "GSM124416" ], "type": "tissue", "id": "GDS2209_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2209", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2209.tab", "compression": "gz" } ], [ [ "GDS2211.tab" ], { "title": "Flagellin effect on toll-like receptor 5 deficient intestinal epithelial cells", "description": "Analysis of intestinal epithelial cells (IECs) from toll-like receptor 5 (TLR5) null animals stimulated with flagellin. TLR5 mediates the immune response to flagellin. Results provide insight into the role of IECs in the innate immune response mediated by TLR5.", "type": "Expression profiling by array", "pubmed_id": "16829963", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5112", "order": "none", "update_date": "Aug 02 2006", "subsets": [ { "dataset_id": "GDS2211", "description": "wild type", "sample_id": [ "GSM115320", "GSM115321" ], "type": "genotype/variation", "id": "GDS2211_1" }, { "dataset_id": "GDS2211", "description": "tlr5 knockout", "sample_id": [ "GSM115322", "GSM115324" ], "type": "genotype/variation", "id": "GDS2211_2" }, { "dataset_id": "GDS2211", "description": "control", "sample_id": [ "GSM115321", "GSM115322" ], "type": "agent", "id": "GDS2211_3" }, { "dataset_id": "GDS2211", "description": "flagellin", "sample_id": [ "GSM115320", "GSM115324" ], "type": "agent", "id": "GDS2211_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2211", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2211.tab", "compression": "gz" } ], [ [ "GDS2212.tab" ], { "title": "Flagellin effect on toll-like receptor 5 deficient intestinal lamina propria cells", "description": "Analysis of CD11c positive intestinal lamina propria cells (LPC) from toll-like receptor 5 (TLR5) null animals stimulated with flagellin. TLR5 mediates the immune response to flagellin. Results provide insight into the role of CD11c positive LPCs in the innate immune response mediated by TLR5.", "type": "Expression profiling by array", "pubmed_id": "16829963", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5113", "order": "none", "update_date": "Mar 23 2007", "subsets": [ { "dataset_id": "GDS2212", "description": "wild type", "sample_id": [ "GSM115430", "GSM115431" ], "type": "genotype/variation", "id": "GDS2212_1" }, { "dataset_id": "GDS2212", "description": "tlr5 knockout", "sample_id": [ "GSM115432", "GSM115433" ], "type": "genotype/variation", "id": "GDS2212_2" }, { "dataset_id": "GDS2212", "description": "control", "sample_id": [ "GSM115430", "GSM115432" ], "type": "agent", "id": "GDS2212_3" }, { "dataset_id": "GDS2212", "description": "flagellin", "sample_id": [ "GSM115431", "GSM115433" ], "type": "agent", "id": "GDS2212_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2212", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2212.tab", "compression": "gz" } ], [ [ "GDS2213.tab" ], { "title": "Hepatoma cell response to inhibition of DNA methylation and histone deacetylation", "description": "Analysis of HepG2 hepatoma cells following treatment with 5-aza-2'-deoxycytidine (5-aza-dC) to inhibit DNA methylation, or trichostatin A (TSA) to inhibit histone deacetylation, or both. Results identify epigentically regulated genes in hepatoma cells.", "type": "Expression profiling by array", "pubmed_id": "16854234", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE5230", "order": "none", "update_date": "Mar 26 2007", "subsets": [ { "dataset_id": "GDS2213", "description": "untreated", "sample_id": [ "GSM118418", "GSM118419", "GSM118420", "GSM118421" ], "type": "agent", "id": "GDS2213_1" }, { "dataset_id": "GDS2213", "description": "5-aza-dC", "sample_id": [ "GSM118422", "GSM118423", "GSM118424", "GSM118425" ], "type": "agent", "id": "GDS2213_2" }, { "dataset_id": "GDS2213", "description": "TSA", "sample_id": [ "GSM118426", "GSM118427", "GSM118428", "GSM118429" ], "type": "agent", "id": "GDS2213_3" }, { "dataset_id": "GDS2213", "description": "5-aza-dC plus TSA", "sample_id": [ "GSM118430", "GSM118431", "GSM118432", "GSM118433" ], "type": "agent", "id": "GDS2213_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2213", "version": 1.0, "instances": "16", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2213.tab", "compression": "gz" } ], [ [ "GDS2214.tab" ], { "title": "Septic neutrophil response to lipopolysaccharide and high mobility group box 1 protein", "description": "Analysis of septic neutrophils treated with lipopolysaccharide or high mobility group box 1 (HMGB1) protein. Neutrophils isolated from patients with sepsis-induced acute lung injury (ALI). HMGB1 is a late mediator of endotoxin lethality, and neutrophils play a role in endotoxemia-associated ALI.", "type": "Expression profiling by array", "pubmed_id": "17581740", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE3037", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2214", "description": "control", "sample_id": [ "GSM66867", "GSM66868", "GSM66869", "GSM66870", "GSM66871", "GSM66872", "GSM66873", "GSM66874" ], "type": "agent", "id": "GDS2214_1" }, { "dataset_id": "GDS2214", "description": "lipopolysaccharide", "sample_id": [ "GSM66883", "GSM66884", "GSM66885", "GSM66886", "GSM66887", "GSM66888", "GSM66889", "GSM66890" ], "type": "agent", "id": "GDS2214_2" }, { "dataset_id": "GDS2214", "description": "HMGB1", "sample_id": [ "GSM66875", "GSM66876", "GSM66877", "GSM66878", "GSM66879", "GSM66880", "GSM66881", "GSM66882" ], "type": "agent", "id": "GDS2214_3" }, { "dataset_id": "GDS2214", "description": "patient 5", "sample_id": [ "GSM66867", "GSM66875", "GSM66883" ], "type": "individual", "id": "GDS2214_4" }, { "dataset_id": "GDS2214", "description": "patient 6", "sample_id": [ "GSM66868", "GSM66876", "GSM66884" ], "type": "individual", "id": "GDS2214_5" }, { "dataset_id": "GDS2214", "description": "patient 7", "sample_id": [ "GSM66869", "GSM66877", "GSM66885" ], "type": "individual", "id": "GDS2214_6" }, { "dataset_id": "GDS2214", "description": "patient 8", "sample_id": [ "GSM66870", "GSM66878", "GSM66886" ], "type": "individual", "id": "GDS2214_7" }, { "dataset_id": "GDS2214", "description": "patient 9", "sample_id": [ "GSM66871", "GSM66879", "GSM66887" ], "type": "individual", "id": "GDS2214_8" }, { "dataset_id": "GDS2214", "description": "patient 12", "sample_id": [ "GSM66872", "GSM66880", "GSM66888" ], "type": "individual", "id": "GDS2214_9" }, { "dataset_id": "GDS2214", "description": "patient 15", "sample_id": [ "GSM66873", "GSM66881", "GSM66889" ], "type": "individual", "id": "GDS2214_10" }, { "dataset_id": "GDS2214", "description": "patient 19", "sample_id": [ "GSM66874", "GSM66882", "GSM66890" ], "type": "individual", "id": "GDS2214_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2214", "version": 1.0, "instances": "24", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2214.tab", "compression": "gz" } ], [ [ "GDS2215.tab" ], { "title": "Insecticides chlorpyrifos and cyfluthrin effect on primary fetal astrocytes", "description": "Analysis of primary fetal astrocytes following exposure to the insecticide chlorpyrifos, an organophosphate, or cyfluthrin, a pyrethroid. Results provide insight into the neurotoxicity of cyfluthrin compared to chlorpyrifos and the mechanisms underlying the neurotoxicity of both insecticides.", "type": "Expression profiling by array", "pubmed_id": "16790487", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5023", "order": "none", "update_date": "Aug 02 2006", "subsets": [ { "dataset_id": "GDS2215", "description": "control", "sample_id": [ "GSM113365", "GSM113366", "GSM113367" ], "type": "agent", "id": "GDS2215_1" }, { "dataset_id": "GDS2215", "description": "chlorpyrifos", "sample_id": [ "GSM113371", "GSM113372", "GSM113373" ], "type": "agent", "id": "GDS2215_2" }, { "dataset_id": "GDS2215", "description": "cyfluthrin", "sample_id": [ "GSM113368", "GSM113369", "GSM113370" ], "type": "agent", "id": "GDS2215_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2215", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2215.tab", "compression": "gz" } ], [ [ "GDS2216.tab" ], { "title": "Lipopolysaccharide antagonist effect on lipopolysaccharide-stimulated dendritic cells: time course", "description": "Analysis of monocyte-derived dendritic cells treated with cyanobacterial product (CyP) for 1 or 3 hours, or with lipopolysaccharide (LPS) in the presence or absence of CyP for 3 hours. Results provide insight into the extent of the antagonistic activity of CyP on LPS-induced responses.", "type": "Expression profiling by array", "pubmed_id": "16717116", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4748", "order": "none", "update_date": "Aug 02 2006", "subsets": [ { "dataset_id": "GDS2216", "description": "control", "sample_id": [ "GSM107453", "GSM107458" ], "type": "agent", "id": "GDS2216_1" }, { "dataset_id": "GDS2216", "description": "LPS", "sample_id": [ "GSM107455", "GSM107460" ], "type": "agent", "id": "GDS2216_2" }, { "dataset_id": "GDS2216", "description": "CyP", "sample_id": [ "GSM107457", "GSM107462", "GSM107454", "GSM107459" ], "type": "agent", "id": "GDS2216_3" }, { "dataset_id": "GDS2216", "description": "CyP plus LPS", "sample_id": [ "GSM107456", "GSM107461" ], "type": "agent", "id": "GDS2216_4" }, { "dataset_id": "GDS2216", "description": "1 h", "sample_id": [ "GSM107457", "GSM107462" ], "type": "time", "id": "GDS2216_5" }, { "dataset_id": "GDS2216", "description": "3 h", "sample_id": [ "GSM107453", "GSM107458", "GSM107455", "GSM107460", "GSM107454", "GSM107459", "GSM107456", "GSM107461" ], "type": "time", "id": "GDS2216_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2216", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2216.tab", "compression": "gz" } ], [ [ "GDS2218.tab" ], { "title": "Developing lung response to oxygen deficiency: time course", "description": "Analysis of developing lungs of animals subjected to hypoxia at 10% oxygen. Animals subjected to hypoxia at fetal day 21 or at birth for 2 or 6 hours. Results provide insight into the relationship between oxygen deficiency and gene expression in the perinatal lung.", "type": "Expression profiling by array", "pubmed_id": "23372771", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE4310", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS2218", "description": "normal", "sample_id": [ "GSM90896", "GSM90987", "GSM90998", "GSM90999", "GSM92750", "GSM92751", "GSM92753", "GSM92756", "GSM92758", "GSM92760", "GSM92761", "GSM92762", "GSM92764", "GSM92765", "GSM92766", "GSM99321", "GSM99322", "GSM99323", "GSM99324", "GSM99325", "GSM99326", "GSM99327", "GSM99328", "GSM99329" ], "type": "stress", "id": "GDS2218_1" }, { "dataset_id": "GDS2218", "description": "10% oxygen", "sample_id": [ "GSM99310", "GSM99311", "GSM99312", "GSM99313", "GSM99314", "GSM99315", "GSM99316", "GSM99317", "GSM99318" ], "type": "stress", "id": "GDS2218_2" }, { "dataset_id": "GDS2218", "description": "fetal day 21", "sample_id": [ "GSM90987", "GSM90998", "GSM90999", "GSM99310", "GSM99311", "GSM99312", "GSM99321", "GSM99322", "GSM99323" ], "type": "time", "id": "GDS2218_3" }, { "dataset_id": "GDS2218", "description": "2 h after birth", "sample_id": [ "GSM92750", "GSM92751", "GSM92753", "GSM99313", "GSM99314", "GSM99315", "GSM99324", "GSM99325", "GSM99326" ], "type": "time", "id": "GDS2218_4" }, { "dataset_id": "GDS2218", "description": "6 h after birth", "sample_id": [ "GSM92756", "GSM92758", "GSM92760", "GSM99316", "GSM99317", "GSM99318", "GSM99327", "GSM99328", "GSM99329" ], "type": "time", "id": "GDS2218_5" }, { "dataset_id": "GDS2218", "description": "12 h after birth", "sample_id": [ "GSM92761", "GSM92762", "GSM92764" ], "type": "time", "id": "GDS2218_6" }, { "dataset_id": "GDS2218", "description": "24 h after birth", "sample_id": [ "GSM90896", "GSM92765", "GSM92766" ], "type": "time", "id": "GDS2218_7" }, { "dataset_id": "GDS2218", "description": "liver", "sample_id": [ "GSM99321", "GSM99322", "GSM99323", "GSM99324", "GSM99325", "GSM99326", "GSM99327", "GSM99328", "GSM99329" ], "type": "tissue", "id": "GDS2218_8" }, { "dataset_id": "GDS2218", "description": "lung", "sample_id": [ "GSM90896", "GSM90987", "GSM90998", "GSM90999", "GSM92750", "GSM92751", "GSM92753", "GSM92756", "GSM92758", "GSM92760", "GSM92761", "GSM92762", "GSM92764", "GSM92765", "GSM92766", "GSM99310", "GSM99311", "GSM99312", "GSM99313", "GSM99314", "GSM99315", "GSM99316", "GSM99317", "GSM99318" ], "type": "tissue", "id": "GDS2218_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2218", "version": 1.0, "instances": "33", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2218.tab", "compression": "gz" } ], [ [ "GDS2219.tab" ], { "title": "Testicular diffuse large B cell lymphoma: various subtypes", "description": "Analysis of primary testicular diffuse large B cell lymphomas (DLBCLs) and nodal DLBCLs. DLBCLs are classified as germinal center B cell-like (GCB), activated B cell-like, or undetermined. GCB is associated with a favorable prognosis. Results provide insight into the nature of testicular DLBCL.", "type": "Expression profiling by array", "pubmed_id": "16823896", "platform": "GPL3408", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log2 ratio", "reference_series": "GSE4296", "order": "none", "update_date": "Oct 03 2012", "subsets": [ { "dataset_id": "GDS2219", "description": "nodal DLBCL", "sample_id": [ "GSM94779", "GSM94782", "GSM94786", "GSM94789", "GSM94791", "GSM94792", "GSM94793", "GSM94794", "GSM94795", "GSM94796" ], "type": "tissue", "id": "GDS2219_1" }, { "dataset_id": "GDS2219", "description": "testicular DLBCL", "sample_id": [ "GSM94797", "GSM94798", "GSM94799", "GSM94800", "GSM94801", "GSM94802", "GSM94803", "GSM94804", "GSM94805", "GSM94806", "GSM94807", "GSM94808", "GSM94809", "GSM94810", "GSM94811", "GSM94812", "GSM94813", "GSM94814", "GSM94815", "GSM94816", "GSM94817", "GSM94818", "GSM94819", "GSM94820", "GSM94821", "GSM94822" ], "type": "tissue", "id": "GDS2219_2" }, { "dataset_id": "GDS2219", "description": "not determined", "sample_id": [ "GSM94797", "GSM94799", "GSM94800", "GSM94811", "GSM94786", "GSM94794" ], "type": "disease state", "id": "GDS2219_3" }, { "dataset_id": "GDS2219", "description": "germinal center B cell-like immunophenotype", "sample_id": [ "GSM94779", "GSM94789", "GSM94791", "GSM94793", "GSM94795" ], "type": "disease state", "id": "GDS2219_4" }, { "dataset_id": "GDS2219", "description": "activated B cell-like immunophentype", "sample_id": [ "GSM94802", "GSM94804", "GSM94805", "GSM94806", "GSM94808", "GSM94809", "GSM94810", "GSM94812", "GSM94814", "GSM94815", "GSM94817", "GSM94818", "GSM94819", "GSM94820", "GSM94782", "GSM94792", "GSM94796" ], "type": "disease state", "id": "GDS2219_5" }, { "dataset_id": "GDS2219", "description": "ambiguous immunophentype", "sample_id": [ "GSM94798", "GSM94801", "GSM94803", "GSM94807", "GSM94813", "GSM94816", "GSM94821", "GSM94822" ], "type": "disease state", "id": "GDS2219_6" } ], "taxid": "9606", "genes": 16414, "aggregation_function": "mean", "name": "GDS2219", "version": 1.0, "instances": "36", "variables": 16417, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2219.tab", "compression": "gz" } ], [ [ "GDS222.tab" ], { "title": "Microarray technology comparison (3OPHs version 1)", "description": "Part of a comparison of spotted long oligonucleotide arrays with in situ synthesized 25-mer arrays. Examination of amplified and unamplified K562 erythroleukemia RNA and Stratagene Universal Human Reference RNA.", "type": "Expression profiling by array", "pubmed_id": "12805270", "platform": "GPL273", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "14001", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "log ratio", "reference_series": "GSE344", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS222", "description": "unamplified cDNA", "sample_id": [ "GSM4848", "GSM4849", "GSM4850", "GSM4851", "GSM4852", "GSM4853" ], "type": "protocol", "id": "GDS222_1" }, { "dataset_id": "GDS222", "description": "amplified RNA, one round", "sample_id": [ "GSM4854", "GSM4855", "GSM4856", "GSM4857", "GSM4858", "GSM4859" ], "type": "protocol", "id": "GDS222_2" }, { "dataset_id": "GDS222", "description": "amplified RNA, two rounds", "sample_id": [ "GSM4860", "GSM4861" ], "type": "protocol", "id": "GDS222_3" } ], "taxid": "9606", "genes": 13227, "aggregation_function": "mean", "name": "GDS222", "version": 1.0, "instances": "14", "variables": 13229, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS222.tab", "compression": "gz" } ], [ [ "GDS2221.tab" ], { "title": "Galectin-1 maturative effect on monocyte-derived dendritic cells", "description": "Analysis of monocyte-derived dendritic cells induced to mature with galectin-1, a member of the beta-galactoside-binding lectin family that binds to cell surface glyconjugates. Results provide insight into the role of galectin-1 in the immunobiology of dendritic cells.", "type": "Expression profiling by array", "pubmed_id": "16785517", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4984", "order": "none", "update_date": "Aug 04 2006", "subsets": [ { "dataset_id": "GDS2221", "description": "untreated", "sample_id": [ "GSM112490", "GSM112491", "GSM112540" ], "type": "agent", "id": "GDS2221_1" }, { "dataset_id": "GDS2221", "description": "vehicle", "sample_id": [ "GSM112668", "GSM112669", "GSM112670" ], "type": "agent", "id": "GDS2221_2" }, { "dataset_id": "GDS2221", "description": "galectin-1", "sample_id": [ "GSM112541", "GSM112661", "GSM112664" ], "type": "agent", "id": "GDS2221_3" }, { "dataset_id": "GDS2221", "description": "lipopolysaccharide", "sample_id": [ "GSM112665", "GSM112666", "GSM112667" ], "type": "agent", "id": "GDS2221_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2221", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2221.tab", "compression": "gz" } ], [ [ "GDS2222.tab" ], { "title": "Fetal male and female gonadal somatic support cells", "description": "Comparison of XY and XX gonadal somatic support cells (SSCs) at embryonic day 13. SSCs express gonadal sex determining (GSD) genes that initiate development of fetal testes and ovaries, and give rise to Sertoli cells in XY and granulosa cells in XX gonads. Results identify potential GSD genes.", "type": "Expression profiling by array", "pubmed_id": "16839824", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE4928", "order": "none", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2222", "description": "male", "sample_id": [ "GSM81752", "GSM81753" ], "type": "gender", "id": "GDS2222_1" }, { "dataset_id": "GDS2222", "description": "female", "sample_id": [ "GSM81750", "GSM81751" ], "type": "gender", "id": "GDS2222_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2222", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2222.tab", "compression": "gz" } ], [ [ "GDS2223.tab" ], { "title": "Fetal male and female whole gonads", "description": "Comparison of male and female whole gonads at embryonic day 13 (E13). At E13, primordial germ cells enter mitotic arrest in male gonads and meiotic prophase in female X gonads. Results provide insight into the biological processes regulating early gonadal differentiation.", "type": "Expression profiling by array", "pubmed_id": "16839824", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE4928", "order": "none", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2223", "description": "ovary", "sample_id": [ "GSM82630", "GSM82631" ], "type": "tissue", "id": "GDS2223_1" }, { "dataset_id": "GDS2223", "description": "testis", "sample_id": [ "GSM82632", "GSM82633" ], "type": "tissue", "id": "GDS2223_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2223", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2223.tab", "compression": "gz" } ], [ [ "GDS2224.tab" ], { "title": "Intra-abdominal adhesions effect on the small intestine: time course", "description": "Analysis of small bowels at various time points up to 14 days following surgery to induce the formation of intra-abdominal adhesions. Adhesions in the peritoneal cavity are a cause of intestinal obstruction. Results provide insight into the pathogenesis of complications following adhesion formation.", "type": "Expression profiling by array", "pubmed_id": "18471257", "platform": "GPL3695", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6144", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4715", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2224", "description": "control", "sample_id": [ "GSM106437", "GSM106438" ], "type": "disease state", "id": "GDS2224_1" }, { "dataset_id": "GDS2224", "description": "intra-abdominal adhesion", "sample_id": [ "GSM106439", "GSM106440", "GSM106441", "GSM106442", "GSM106443", "GSM106444", "GSM106445", "GSM106446" ], "type": "disease state", "id": "GDS2224_2" }, { "dataset_id": "GDS2224", "description": "0 d", "sample_id": [ "GSM106437", "GSM106438" ], "type": "time", "id": "GDS2224_3" }, { "dataset_id": "GDS2224", "description": "1 d", "sample_id": [ "GSM106439", "GSM106440" ], "type": "time", "id": "GDS2224_4" }, { "dataset_id": "GDS2224", "description": "3 d", "sample_id": [ "GSM106441", "GSM106442" ], "type": "time", "id": "GDS2224_5" }, { "dataset_id": "GDS2224", "description": "7 d", "sample_id": [ "GSM106443", "GSM106444" ], "type": "time", "id": "GDS2224_6" }, { "dataset_id": "GDS2224", "description": "14 d", "sample_id": [ "GSM106445", "GSM106446" ], "type": "time", "id": "GDS2224_7" } ], "taxid": "10090", "genes": 5155, "aggregation_function": "mean", "name": "GDS2224", "version": 1.0, "instances": "10", "variables": 5158, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2224.tab", "compression": "gz" } ], [ [ "GDS2225.tab" ], { "title": "Mechanical strain effect on fetal lung type II epithelial cells", "description": "Analysis of embryonic day 19 fetal lung type II epithelial cells exposed to mechanical strain for 16 hours. Mechanical forces are essential for normal fetal lung development. Results provide insight into the mechanisms regulating lung development in response to mechanical forces.", "type": "Expression profiling by array", "pubmed_id": "16864689", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3541", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2225", "description": "control", "sample_id": [ "GSM81022", "GSM81159", "GSM81160" ], "type": "stress", "id": "GDS2225_1" }, { "dataset_id": "GDS2225", "description": "mechanical strain", "sample_id": [ "GSM81161", "GSM81162", "GSM81163" ], "type": "stress", "id": "GDS2225_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2225", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2225.tab", "compression": "gz" } ], [ [ "GDS2226.tab" ], { "title": "Hippocampus of various inbred strains", "description": "Analysis of hippocampi from 8 inbred strains. The hippocampus is a key area of the brain involved in behaviors such as learning, memory, anxiety, and aggression. Results provide insight into strain-specific gene expression differences and their relationship to phenotypic variables such as behavior.", "type": "Expression profiling by array", "pubmed_id": "15128411", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE5429", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2226", "description": "129S1/SvImJ", "sample_id": [ "GSM124412", "GSM124413", "GSM124432", "GSM124433" ], "type": "strain", "id": "GDS2226_1" }, { "dataset_id": "GDS2226", "description": "A/J", "sample_id": [ "GSM124375", "GSM124376", "GSM124426", "GSM124427" ], "type": "strain", "id": "GDS2226_2" }, { "dataset_id": "GDS2226", "description": "C57BL/6J", "sample_id": [ "GSM124373", "GSM124374", "GSM124422", "GSM124423" ], "type": "strain", "id": "GDS2226_3" }, { "dataset_id": "GDS2226", "description": "C3H/HeJ", "sample_id": [ "GSM124379", "GSM124383", "GSM124428", "GSM124429" ], "type": "strain", "id": "GDS2226_4" }, { "dataset_id": "GDS2226", "description": "DBA/2J", "sample_id": [ "GSM124420", "GSM124421", "GSM124424", "GSM124425" ], "type": "strain", "id": "GDS2226_5" }, { "dataset_id": "GDS2226", "description": "FVB/NJ", "sample_id": [ "GSM124377", "GSM124430", "GSM124431", "GSM124446" ], "type": "strain", "id": "GDS2226_6" }, { "dataset_id": "GDS2226", "description": "BALB/cByJ", "sample_id": [ "GSM124371", "GSM124372", "GSM124439", "GSM124442" ], "type": "strain", "id": "GDS2226_7" }, { "dataset_id": "GDS2226", "description": "SJL/J", "sample_id": [ "GSM124386", "GSM124391", "GSM124435", "GSM124437" ], "type": "strain", "id": "GDS2226_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2226", "version": 1.0, "instances": "32", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2226.tab", "compression": "gz" } ], [ [ "GDS2227.tab" ], { "title": "Guided differentiation into dopaminergic neurons and random differentiation into embryoid bodies", "description": "Comparison of cells induced to differentiate into dopaminergic neurons by guided differentiation (GD) to those induced to differentiate into embryoid bodies (EBs) by random differentiation (RD). Cells at 3 stages of differentiation in the GD model and days 4 to 21 EBs in the RD model compared.", "type": "Expression profiling by array", "pubmed_id": "16627687", "platform": "GPL2987", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "11520", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "21", "value_type": "log ratio", "reference_series": "GSE5459", "order": "none", "update_date": "Aug 30 2006", "subsets": [ { "dataset_id": "GDS2227", "description": "random differentiation", "sample_id": [ "GSM80289", "GSM80290", "GSM80291", "GSM80292", "GSM80293", "GSM80294", "GSM80295", "GSM80296", "GSM80297", "GSM80298", "GSM80299", "GSM80300" ], "type": "growth protocol", "id": "GDS2227_1" }, { "dataset_id": "GDS2227", "description": "guided differentiation", "sample_id": [ "GSM80482", "GSM80483", "GSM80484", "GSM80485", "GSM80486", "GSM80487", "GSM80488", "GSM80489", "GSM80490" ], "type": "growth protocol", "id": "GDS2227_2" }, { "dataset_id": "GDS2227", "description": "4 d", "sample_id": [ "GSM80289", "GSM80290", "GSM80291" ], "type": "development stage", "id": "GDS2227_3" }, { "dataset_id": "GDS2227", "description": "8 d", "sample_id": [ "GSM80292", "GSM80293", "GSM80294" ], "type": "development stage", "id": "GDS2227_4" }, { "dataset_id": "GDS2227", "description": "15 d", "sample_id": [ "GSM80295", "GSM80296", "GSM80297" ], "type": "development stage", "id": "GDS2227_5" }, { "dataset_id": "GDS2227", "description": "21 d", "sample_id": [ "GSM80298", "GSM80299", "GSM80300" ], "type": "development stage", "id": "GDS2227_6" }, { "dataset_id": "GDS2227", "description": "neural precursors (stage 3)", "sample_id": [ "GSM80482", "GSM80483", "GSM80484" ], "type": "development stage", "id": "GDS2227_7" }, { "dataset_id": "GDS2227", "description": "expanded neural precursors (stage 4)", "sample_id": [ "GSM80485", "GSM80486", "GSM80487" ], "type": "development stage", "id": "GDS2227_8" }, { "dataset_id": "GDS2227", "description": "differentiated dopaminergic neurons (stage 5)", "sample_id": [ "GSM80488", "GSM80489", "GSM80490" ], "type": "development stage", "id": "GDS2227_9" } ], "taxid": "10090", "genes": 10471, "aggregation_function": "mean", "name": "GDS2227", "version": 1.0, "instances": "21", "variables": 10474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2227.tab", "compression": "gz" } ], [ [ "GDS2228.tab" ], { "title": "Testis stem cells", "description": "Analysis of testes from bgcn mutants with or without Os ligand overexpression. Testes of bgcn mutants are enriched in transit amplifying cells, while those of Os overexpressing bgcn mutants are enriched in germline and somatic stem cells. Results provide insight into the regulation of stem cells.", "type": "Expression profiling by array", "pubmed_id": "16616121", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4188", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2228", "description": "wild-type", "sample_id": [ "GSM95942", "GSM95943", "GSM95944", "GSM95945", "GSM95946" ], "type": "genotype/variation", "id": "GDS2228_1" }, { "dataset_id": "GDS2228", "description": "bgcn mutant", "sample_id": [ "GSM95931", "GSM95932", "GSM95933", "GSM95934", "GSM95935" ], "type": "genotype/variation", "id": "GDS2228_2" }, { "dataset_id": "GDS2228", "description": "Os overexpressing bgcn mutant", "sample_id": [ "GSM95936", "GSM95937", "GSM95938", "GSM95939", "GSM95940", "GSM95941" ], "type": "genotype/variation", "id": "GDS2228_3" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2228", "version": 1.0, "instances": "16", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2228.tab", "compression": "gz" } ], [ [ "GDS2229.tab" ], { "title": "Reflux-induced esophageal cancer model", "description": "Analysis of three rodent carcinoma cell lines established from two biliary reflux-associated tumors. Gastroesophageal reflux disease is associated with the development of esophageal adenocarcinoma. Results identify upregulation of several cancer-related genes important in human esophageal cancer.", "type": "Expression profiling by array", "pubmed_id": "17320581", "platform": "GPL1415", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16128", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE1707", "order": "none", "update_date": "Mar 12 2007", "subsets": [ { "dataset_id": "GDS2229", "description": "Amy", "sample_id": [ "GSM29582", "GSM29583" ], "type": "cell line", "id": "GDS2229_1" }, { "dataset_id": "GDS2229", "description": "JA", "sample_id": [ "GSM29578", "GSM29580" ], "type": "cell line", "id": "GDS2229_2" }, { "dataset_id": "GDS2229", "description": "JB", "sample_id": [ "GSM29576", "GSM29577" ], "type": "cell line", "id": "GDS2229_3" } ], "taxid": "10116", "genes": 6999, "aggregation_function": "mean", "name": "GDS2229", "version": 1.0, "instances": "6", "variables": 7001, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2229.tab", "compression": "gz" } ], [ [ "GDS223.tab" ], { "title": "Microarray technology comparison (HG-U95A)", "description": "Part of a comparison of spotted long oligonucleotide arrays with in situ synthesized 25-mer arrays. Examination of amplified and unamplified K562 erythroleukemia RNA and Stratagene Universal Human Reference RNA.", "type": "Expression profiling by array", "pubmed_id": "12805270", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE344", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS223", "description": "K562 erythroleukemia", "sample_id": [ "GSM4843", "GSM4844" ], "type": "cell type", "id": "GDS223_1" }, { "dataset_id": "GDS223", "description": "Universal reference", "sample_id": [ "GSM4845", "GSM4846", "GSM4847" ], "type": "cell type", "id": "GDS223_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS223", "version": 1.0, "instances": "5", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS223.tab", "compression": "gz" } ], [ [ "GDS2230.tab" ], { "title": "Intestinal absorptive cell model response to iron deficiency and overload", "description": "Analysis of intestinal CaCo-2 cell line grown in medium free of iron or supplemented with hemin to mimic iron overload. Intestinal iron absorption is crucial for systemic iron homeostasis. Results provide insight into molecular mechanisms regulating iron metabolism.", "type": "Expression profiling by array", "pubmed_id": "16638840", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log10 ratio", "reference_series": "GSE3573", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2230", "description": "DMEM-FBS", "sample_id": [ "GSM81961", "GSM81962", "GSM81963" ], "type": "agent", "id": "GDS2230_1" }, { "dataset_id": "GDS2230", "description": "DMEM-Hemin", "sample_id": [ "GSM81964", "GSM81965", "GSM81966" ], "type": "agent", "id": "GDS2230_2" }, { "dataset_id": "GDS2230", "description": "SF-0", "sample_id": [ "GSM81967", "GSM81968", "GSM81969" ], "type": "agent", "id": "GDS2230_3" }, { "dataset_id": "GDS2230", "description": "SF-FAC (ferric ammonium citrate)", "sample_id": [ "GSM81970", "GSM81971", "GSM81972" ], "type": "agent", "id": "GDS2230_4" }, { "dataset_id": "GDS2230", "description": "low ferritin", "sample_id": [ "GSM81961", "GSM81962", "GSM81963", "GSM81967", "GSM81968", "GSM81969" ], "type": "growth protocol", "id": "GDS2230_5" }, { "dataset_id": "GDS2230", "description": "high ferritin", "sample_id": [ "GSM81964", "GSM81965", "GSM81966", "GSM81970", "GSM81971", "GSM81972" ], "type": "growth protocol", "id": "GDS2230_6" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS2230", "version": 1.0, "instances": "12", "variables": 18358, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2230.tab", "compression": "gz" } ], [ [ "GDS2231.tab" ], { "title": "Aged marrow-derived stromal cells response to dexamethasone", "description": "Analysis of cultured marrow-derived stromal cells (MSCs) from 3 or 15 month old animals following ex vivo treatment of the cells with dexamethasone. Results provide insight into molecular mechanisms regulating MSC differentiation in young and aged animals.", "type": "Expression profiling by array", "pubmed_id": "16643645", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3339", "order": "none", "update_date": "Aug 08 2006", "subsets": [ { "dataset_id": "GDS2231", "description": "3 m", "sample_id": [ "GSM75444", "GSM75445", "GSM75447" ], "type": "age", "id": "GDS2231_1" }, { "dataset_id": "GDS2231", "description": "15 m", "sample_id": [ "GSM75446", "GSM75448" ], "type": "age", "id": "GDS2231_2" }, { "dataset_id": "GDS2231", "description": "untreated", "sample_id": [ "GSM75444", "GSM75445", "GSM75446" ], "type": "agent", "id": "GDS2231_3" }, { "dataset_id": "GDS2231", "description": "dexamethasone", "sample_id": [ "GSM75447", "GSM75448" ], "type": "agent", "id": "GDS2231_4" }, { "dataset_id": "GDS2231", "description": "male", "sample_id": [ "GSM75444" ], "type": "gender", "id": "GDS2231_5" }, { "dataset_id": "GDS2231", "description": "female", "sample_id": [ "GSM75445", "GSM75446", "GSM75447", "GSM75448" ], "type": "gender", "id": "GDS2231_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2231", "version": 1.0, "instances": "5", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2231.tab", "compression": "gz" } ], [ [ "GDS2232.tab" ], { "title": "Adrenal gland in constant darkness: time course", "description": "Analysis of adrenal glands of wild type animals at various time points after transferring the animals from a light-day cycle to constant darkness. Results provide insight into the function of the adrenal cortical clock.", "type": "Expression profiling by array", "pubmed_id": "16998155", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE4238", "order": "ordered", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2232", "description": "38 h", "sample_id": [ "GSM96630", "GSM96923" ], "type": "time", "id": "GDS2232_1" }, { "dataset_id": "GDS2232", "description": "42 h", "sample_id": [ "GSM96631", "GSM96924" ], "type": "time", "id": "GDS2232_2" }, { "dataset_id": "GDS2232", "description": "46 h", "sample_id": [ "GSM96632", "GSM96925" ], "type": "time", "id": "GDS2232_3" }, { "dataset_id": "GDS2232", "description": "50 h", "sample_id": [ "GSM96633", "GSM96926" ], "type": "time", "id": "GDS2232_4" }, { "dataset_id": "GDS2232", "description": "54 h", "sample_id": [ "GSM96634", "GSM96927" ], "type": "time", "id": "GDS2232_5" }, { "dataset_id": "GDS2232", "description": "58 h", "sample_id": [ "GSM96635", "GSM96928" ], "type": "time", "id": "GDS2232_6" }, { "dataset_id": "GDS2232", "description": "62 h", "sample_id": [ "GSM96636", "GSM96929" ], "type": "time", "id": "GDS2232_7" }, { "dataset_id": "GDS2232", "description": "66 h", "sample_id": [ "GSM96637", "GSM96930" ], "type": "time", "id": "GDS2232_8" }, { "dataset_id": "GDS2232", "description": "70 h", "sample_id": [ "GSM96638", "GSM96931" ], "type": "time", "id": "GDS2232_9" }, { "dataset_id": "GDS2232", "description": "74 h", "sample_id": [ "GSM96639", "GSM96932" ], "type": "time", "id": "GDS2232_10" }, { "dataset_id": "GDS2232", "description": "78 h", "sample_id": [ "GSM96640", "GSM96933" ], "type": "time", "id": "GDS2232_11" }, { "dataset_id": "GDS2232", "description": "82 h", "sample_id": [ "GSM96641", "GSM96934" ], "type": "time", "id": "GDS2232_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2232", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2232.tab", "compression": "gz" } ], [ [ "GDS2233.tab" ], { "title": "Circadian clock deficient Per2/Cry1 double mutant adrenal gland in constant darkness: time course", "description": "Analysis of adrenal glands of Per2/Cry1 double mutant animals at 46 and 54 hours after transferring the animals from a light-day cycle to constant darkness. Per2/Cry1 double mutants lack a circadian clock. Results identify clock-regulated genes in the adrenal that are not necessarily rhythmic.", "type": "Expression profiling by array", "pubmed_id": "16890544", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4239", "order": "ordered", "update_date": "May 23 2007", "subsets": [ { "dataset_id": "GDS2233", "description": "46 h", "sample_id": [ "GSM96642", "GSM96643", "GSM96644" ], "type": "time", "id": "GDS2233_1" }, { "dataset_id": "GDS2233", "description": "54 h", "sample_id": [ "GSM96645", "GSM96646", "GSM96648" ], "type": "time", "id": "GDS2233_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2233", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2233.tab", "compression": "gz" } ], [ [ "GDS2234.tab" ], { "title": "Skeletal muscle response to endurance exercise training", "description": "Comparison of vastus lateralis muscles of previously sedentary individuals with improved insulin sensitivity (SI) after 20 weeks of exercise to those with no change in SI. Results provide insight into the mechanisms involved in the improvement in SI induced by regular exercise.", "type": "Expression profiling by array", "pubmed_id": "15687108", "platform": "GPL1412", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "21120", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE1718", "order": "none", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2234", "description": "baseline", "sample_id": [ "GSM29507", "GSM29523", "GSM29529" ], "type": "protocol", "id": "GDS2234_1" }, { "dataset_id": "GDS2234", "description": "20 wk exercise", "sample_id": [ "GSM29533", "GSM29535", "GSM29536" ], "type": "protocol", "id": "GDS2234_2" } ], "taxid": "9606", "genes": 17122, "aggregation_function": "mean", "name": "GDS2234", "version": 1.0, "instances": "6", "variables": 17124, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2234.tab", "compression": "gz" } ], [ [ "GDS2235.tab" ], { "title": "Burn sepsis model: liver", "description": "Analysis of livers of animals subjected to moderate burn injury followed two days later by cecum ligation and puncture (CLP) to produce sepsis. The dual insult induces a systemic hypermetabolic state. Results provide insight into regulation of the hypermetabolic response in the liver.", "type": "Expression profiling by array", "pubmed_id": "17009336", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1781", "order": "none", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2235", "description": "control", "sample_id": [ "GSM30469", "GSM30470", "GSM30471" ], "type": "disease state", "id": "GDS2235_1" }, { "dataset_id": "GDS2235", "description": "sepsis", "sample_id": [ "GSM30472", "GSM30473", "GSM30474" ], "type": "disease state", "id": "GDS2235_2" }, { "dataset_id": "GDS2235", "description": "burn sepsis", "sample_id": [ "GSM30475", "GSM30476", "GSM30477" ], "type": "disease state", "id": "GDS2235_3" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2235", "version": 1.0, "instances": "9", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2235.tab", "compression": "gz" } ], [ [ "GDS2237.tab" ], { "title": "Liver response to skin burn: time course", "description": "Analysis of livers of animals at various time points up to 7 days after inflicting a full skin thickness scald burn of the dorsum. Results provide insight into the mechanisms underlying the metabolic changes in the liver induced by burn injury.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1860", "order": "none", "update_date": "Aug 08 2006", "subsets": [ { "dataset_id": "GDS2237", "description": "sham control", "sample_id": [ "GSM32414", "GSM32415", "GSM32416", "GSM32423", "GSM32424", "GSM32425", "GSM32429", "GSM32430", "GSM32431", "GSM32435", "GSM32436", "GSM32437" ], "type": "shock", "id": "GDS2237_1" }, { "dataset_id": "GDS2237", "description": "burn", "sample_id": [ "GSM32417", "GSM32418", "GSM32419", "GSM32420", "GSM32421", "GSM32422", "GSM32426", "GSM32427", "GSM32428", "GSM32432", "GSM32433", "GSM32434" ], "type": "shock", "id": "GDS2237_2" }, { "dataset_id": "GDS2237", "description": "1 d", "sample_id": [ "GSM32414", "GSM32415", "GSM32416", "GSM32417", "GSM32418", "GSM32419" ], "type": "time", "id": "GDS2237_3" }, { "dataset_id": "GDS2237", "description": "2 d", "sample_id": [ "GSM32423", "GSM32424", "GSM32425", "GSM32420", "GSM32421", "GSM32422" ], "type": "time", "id": "GDS2237_4" }, { "dataset_id": "GDS2237", "description": "4 d", "sample_id": [ "GSM32426", "GSM32427", "GSM32428", "GSM32429", "GSM32430", "GSM32431" ], "type": "time", "id": "GDS2237_5" }, { "dataset_id": "GDS2237", "description": "7 d", "sample_id": [ "GSM32432", "GSM32433", "GSM32434", "GSM32435", "GSM32436", "GSM32437" ], "type": "time", "id": "GDS2237_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2237", "version": 1.0, "instances": "24", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2237.tab", "compression": "gz" } ], [ [ "GDS2239.tab" ], { "title": "Hepatitis C virus core protein effect on hepatocyte cell line", "description": "Analysis of HepG2 hepatocytes following induction of hepatitis C virus (HCV) core protein expression. HCV core protein is implicated in the development of hepatocellular carcinoma (HCC). Results provide insight into the molecular processes affected by the HCV core protein.", "type": "Expression profiling by array", "pubmed_id": "16876223", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2067", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2239", "description": "control", "sample_id": [ "GSM37564", "GSM37565", "GSM37566" ], "type": "agent", "id": "GDS2239_1" }, { "dataset_id": "GDS2239", "description": "hepatitis C virus core protein", "sample_id": [ "GSM37561", "GSM37562", "GSM37563" ], "type": "agent", "id": "GDS2239_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2239", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2239.tab", "compression": "gz" } ], [ [ "GDS224.tab" ], { "title": "Platform type/amplification method cross comparison (16K cDNA)(I)", "description": "Part of a cross comparison of DNA microarray platforms and linear amplification methods. Double and single round amplified liver and spleen RNA analyzed on a cDNA array.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE6438", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS224", "description": "single round amplification", "sample_id": [ "GSM4657", "GSM4663", "GSM4667" ], "type": "protocol", "id": "GDS224_1" }, { "dataset_id": "GDS224", "description": "double round amplification", "sample_id": [ "GSM4656", "GSM4662", "GSM4666" ], "type": "protocol", "id": "GDS224_2" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS224", "version": 1.0, "instances": "6", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS224.tab", "compression": "gz" } ], [ [ "GDS2240.tab" ], { "title": "Ileocecal epithelial cell line response to Cryptosporidium parvum infection: time course", "description": "Analysis of HCT-8 ileocecal epithelial cells at various time points up to 72 hours after infection with Cryptosporidium parvum, an obligate intracellular protozoan that is a major cause of gastrointestinal diseases. Results provide insight into the interaction between the host cell and C. parvum.", "type": "Expression profiling by array", "pubmed_id": "14711592", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2077", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2240", "description": "time course 1", "sample_id": [ "GSM37929", "GSM37930", "GSM37931", "GSM37932", "GSM37933", "GSM37934" ], "type": "other", "id": "GDS2240_1" }, { "dataset_id": "GDS2240", "description": "time course 2", "sample_id": [ "GSM37935", "GSM37936", "GSM37937", "GSM37938", "GSM37939", "GSM37940" ], "type": "other", "id": "GDS2240_2" }, { "dataset_id": "GDS2240", "description": "time course 3", "sample_id": [ "GSM37941", "GSM37943", "GSM37944", "GSM37945", "GSM37946", "GSM37947" ], "type": "other", "id": "GDS2240_3" }, { "dataset_id": "GDS2240", "description": "mock", "sample_id": [ "GSM37929", "GSM37935", "GSM37941" ], "type": "infection", "id": "GDS2240_4" }, { "dataset_id": "GDS2240", "description": "Cryptosporidium parvum", "sample_id": [ "GSM37930", "GSM37931", "GSM37932", "GSM37933", "GSM37934", "GSM37936", "GSM37937", "GSM37938", "GSM37939", "GSM37940", "GSM37943", "GSM37944", "GSM37945", "GSM37946", "GSM37947" ], "type": "infection", "id": "GDS2240_5" }, { "dataset_id": "GDS2240", "description": "6 h", "sample_id": [ "GSM37930", "GSM37936", "GSM37943" ], "type": "time", "id": "GDS2240_6" }, { "dataset_id": "GDS2240", "description": "12 h", "sample_id": [ "GSM37931", "GSM37937", "GSM37944" ], "type": "time", "id": "GDS2240_7" }, { "dataset_id": "GDS2240", "description": "24 h", "sample_id": [ "GSM37929", "GSM37932", "GSM37935", "GSM37938", "GSM37941", "GSM37945" ], "type": "time", "id": "GDS2240_8" }, { "dataset_id": "GDS2240", "description": "48 h", "sample_id": [ "GSM37933", "GSM37939", "GSM37946" ], "type": "time", "id": "GDS2240_9" }, { "dataset_id": "GDS2240", "description": "72 h", "sample_id": [ "GSM37934", "GSM37940", "GSM37947" ], "type": "time", "id": "GDS2240_10" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2240", "version": 1.0, "instances": "18", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2240.tab", "compression": "gz" } ], [ [ "GDS2241.tab" ], { "title": "Trophoblast cell lines", "description": "Comparison of BeWo and JEG3 trophoblast cell lines. Trophoblast cell lines are used as surrogates for primary trophoblast cells in the study of placental function. Results provide insight into the differences between the two cell lines.", "type": "Expression profiling by array", "pubmed_id": "16797695", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE2531", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2241", "description": "BeWo", "sample_id": [ "GSM48269", "GSM48270", "GSM48271", "GSM48272", "GSM48273" ], "type": "cell line", "id": "GDS2241_1" }, { "dataset_id": "GDS2241", "description": "JEG3", "sample_id": [ "GSM48266", "GSM48267", "GSM48268" ], "type": "cell line", "id": "GDS2241_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2241", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2241.tab", "compression": "gz" } ], [ [ "GDS2242.tab" ], { "title": "Acute promyelocytic leukemia", "description": "Analysis of bone marrow samples from 18 patients with acute promyelocytic leukemia (APL). Fms-like tyrosine kinase 3 (Flt3) is mutated in 35 to 40% of APL cases. Results provide insight into the role of Flt3 mutations in the pathogenesis of APL.", "type": "Expression profiling by array", "pubmed_id": "16270043", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log10 ratio", "reference_series": "GSE2550", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2242", "description": "FLT3 wild type", "sample_id": [ "GSM48254", "GSM48507", "GSM48510", "GSM48546", "GSM48584", "GSM48585", "GSM48586" ], "type": "genotype/variation", "id": "GDS2242_1" }, { "dataset_id": "GDS2242", "description": "FLT3 internal tandem duplications", "sample_id": [ "GSM48255", "GSM48501", "GSM48503", "GSM48539", "GSM48543", "GSM48587", "GSM48588" ], "type": "genotype/variation", "id": "GDS2242_2" }, { "dataset_id": "GDS2242", "description": "FLT3 aspartic acid mutation", "sample_id": [ "GSM48253", "GSM48350", "GSM48541" ], "type": "genotype/variation", "id": "GDS2242_3" }, { "dataset_id": "GDS2242", "description": "FLT3 internal tandem duplications and aspartic acid mutation", "sample_id": [ "GSM48252" ], "type": "genotype/variation", "id": "GDS2242_4" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS2242", "version": 1.0, "instances": "18", "variables": 18357, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2242.tab", "compression": "gz" } ], [ [ "GDS2243.tab" ], { "title": "Denervated skeletal muscle response to reinnervation", "description": "Analysis of reinnervated tibialis anterior muscles that were previously denervated for 4 weeks. Denervation-induced myofiber atrophy can be reversed by reinnervation. Results provide insight into the molecular mechanisms contributing to myofiber growth after reinnervation.", "type": "Expression profiling by array", "pubmed_id": "16877003", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2566", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2243", "description": "control", "sample_id": [ "GSM49432", "GSM49434", "GSM49436" ], "type": "protocol", "id": "GDS2243_1" }, { "dataset_id": "GDS2243", "description": "reinnervated", "sample_id": [ "GSM49433", "GSM49435", "GSM49437" ], "type": "protocol", "id": "GDS2243_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2243", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2243.tab", "compression": "gz" } ], [ [ "GDS2244.tab" ], { "title": "Melanoma cell line response to E2F-1 overexpression and doxorubicin treatment", "description": "Analysis of E2F-1 overexpressing SK-MEL-2 melanoma cells treated with the anti-cancer drug doxorubicin (dox). Results provide insight into the molecular mechanisms underlying the synergistic effect on melanoma cell apoptosis observed when E2F-1 overexpression is combined with dox treatment", "type": "Expression profiling by array", "pubmed_id": "16827129", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2715", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2244", "description": "E2F-1", "sample_id": [ "GSM52504", "GSM52508" ], "type": "agent", "id": "GDS2244_1" }, { "dataset_id": "GDS2244", "description": "doxorubicin", "sample_id": [ "GSM52518", "GSM52519" ], "type": "agent", "id": "GDS2244_2" }, { "dataset_id": "GDS2244", "description": "E2F-1 and doxorubicin", "sample_id": [ "GSM52516", "GSM52517" ], "type": "agent", "id": "GDS2244_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2244", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2244.tab", "compression": "gz" } ], [ [ "GDS2245.tab" ], { "title": "Uterine fibroids with mutated fumarate hydratase (I)", "description": "Analysis of uterine fibroids with mutations in the fumarate hydratase (FH) gene. FH catalyzes the hydration of fumarate in the TCA cycle. Heterozygous germline mutations in FH cause uterine fibroids and renal cell cancer. Results provide insight into the pathogenesis of TCA cycle-related tumors.", "type": "Expression profiling by array", "pubmed_id": "16319128", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE2724", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2245", "description": "normal myometrium", "sample_id": [ "GSM52661", "GSM52662", "GSM52663", "GSM52664", "GSM52665", "GSM52666", "GSM52667", "GSM52668", "GSM52669", "GSM52670", "GSM52671" ], "type": "disease state", "id": "GDS2245_1" }, { "dataset_id": "GDS2245", "description": "uterine fibroid", "sample_id": [ "GSM38689", "GSM38690", "GSM38691", "GSM38692", "GSM38693", "GSM38694", "GSM38695" ], "type": "disease state", "id": "GDS2245_2" }, { "dataset_id": "GDS2245", "description": "patient B7", "sample_id": [ "GSM38691", "GSM38692", "GSM38693", "GSM38694", "GSM38695", "GSM52670" ], "type": "individual", "id": "GDS2245_3" }, { "dataset_id": "GDS2245", "description": "patient 4", "sample_id": [ "GSM38690", "GSM52661" ], "type": "individual", "id": "GDS2245_4" }, { "dataset_id": "GDS2245", "description": "patient 6", "sample_id": [ "GSM52671" ], "type": "individual", "id": "GDS2245_5" }, { "dataset_id": "GDS2245", "description": "patient 9", "sample_id": [ "GSM52662" ], "type": "individual", "id": "GDS2245_6" }, { "dataset_id": "GDS2245", "description": "patient 11", "sample_id": [ "GSM52663" ], "type": "individual", "id": "GDS2245_7" }, { "dataset_id": "GDS2245", "description": "patient 28", "sample_id": [ "GSM52664" ], "type": "individual", "id": "GDS2245_8" }, { "dataset_id": "GDS2245", "description": "patient 32", "sample_id": [ "GSM38689", "GSM52665" ], "type": "individual", "id": "GDS2245_9" }, { "dataset_id": "GDS2245", "description": "patient 34", "sample_id": [ "GSM52666" ], "type": "individual", "id": "GDS2245_10" }, { "dataset_id": "GDS2245", "description": "patient 38", "sample_id": [ "GSM52667" ], "type": "individual", "id": "GDS2245_11" }, { "dataset_id": "GDS2245", "description": "patient 44", "sample_id": [ "GSM52668" ], "type": "individual", "id": "GDS2245_12" }, { "dataset_id": "GDS2245", "description": "patient 51", "sample_id": [ "GSM52669" ], "type": "individual", "id": "GDS2245_13" }, { "dataset_id": "GDS2245", "description": "control", "sample_id": [ "GSM52661", "GSM52662", "GSM52663", "GSM52664", "GSM52665", "GSM52666", "GSM52667", "GSM52668", "GSM52669", "GSM52670", "GSM52671" ], "type": "genotype/variation", "id": "GDS2245_14" }, { "dataset_id": "GDS2245", "description": "mutant FH", "sample_id": [ "GSM38689", "GSM38690", "GSM38691", "GSM38692", "GSM38693", "GSM38694", "GSM38695" ], "type": "genotype/variation", "id": "GDS2245_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2245", "version": 1.0, "instances": "18", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2245.tab", "compression": "gz" } ], [ [ "GDS2246.tab" ], { "title": "Uterine fibroids with mutated fumarate hydratase (II)", "description": "Analysis of uterine fibroids with mutations in the fumarate hydratase (FH) gene. FH catalyzes the hydration of fumarate in the TCA cycle. Heterozygous germline mutations in FH cause uterine fibroids and renal cell cancer. Results provide insight into the pathogenesis of TCA cycle-related tumors.", "type": "Expression profiling by array", "pubmed_id": "16319128", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2725", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2246", "description": "normal myometrium", "sample_id": [ "GSM52672", "GSM52679", "GSM52681" ], "type": "disease state", "id": "GDS2246_1" }, { "dataset_id": "GDS2246", "description": "uterine fibroid", "sample_id": [ "GSM52673", "GSM52674", "GSM52675", "GSM52676", "GSM52677", "GSM52678", "GSM52680" ], "type": "disease state", "id": "GDS2246_2" }, { "dataset_id": "GDS2246", "description": "control", "sample_id": [ "GSM52672", "GSM52679", "GSM52681" ], "type": "genotype/variation", "id": "GDS2246_3" }, { "dataset_id": "GDS2246", "description": "wild type FH", "sample_id": [ "GSM52678", "GSM52680" ], "type": "genotype/variation", "id": "GDS2246_4" }, { "dataset_id": "GDS2246", "description": "mutant FH", "sample_id": [ "GSM52673", "GSM52674", "GSM52675", "GSM52676", "GSM52677" ], "type": "genotype/variation", "id": "GDS2246_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2246", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2246.tab", "compression": "gz" } ], [ [ "GDS2248.tab" ], { "title": "Hereditary pulmonary arterial hypertension model: lung", "description": "Comparison of lungs of animals expressing a dominant negative type II bone morphogenic protein receptor (BMPRII) in smooth muscles to those with pulmonary arterial hypertension (PAH) induced by acute exposure to hypobaric hypoxia. BMPRII mutations are responsible for the majority of hereditary PAHs.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE2773", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2248", "description": "wild type", "sample_id": [ "GSM60394", "GSM60393" ], "type": "protocol", "id": "GDS2248_1" }, { "dataset_id": "GDS2248", "description": "empty vector", "sample_id": [ "GSM60395" ], "type": "protocol", "id": "GDS2248_2" }, { "dataset_id": "GDS2248", "description": "dominant negative BMPRII", "sample_id": [ "GSM60391", "GSM60392" ], "type": "protocol", "id": "GDS2248_3" }, { "dataset_id": "GDS2248", "description": "control", "sample_id": [ "GSM60392", "GSM60394", "GSM60395" ], "type": "disease state", "id": "GDS2248_4" }, { "dataset_id": "GDS2248", "description": "hypoxic PAH", "sample_id": [ "GSM60393" ], "type": "disease state", "id": "GDS2248_5" }, { "dataset_id": "GDS2248", "description": "hereditary PAH", "sample_id": [ "GSM60391" ], "type": "disease state", "id": "GDS2248_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2248", "version": 1.0, "instances": "5", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2248.tab", "compression": "gz" } ], [ [ "GDS2249.tab" ], { "title": "Arsenic effect on the liver: time course", "description": "Analysis of livers of animals at various time points up to 96 hours following exposure to 15 ppm arsenic. Arsenic is an environmental toxicant and carcinogen. Results provide insight into the molecular mechanisms underlying the toxicity and carcinogenicity of arsenic.", "type": "Expression profiling by array", "pubmed_id": "16882884", "platform": "GPL2715", "platform_organism": "Danio rerio", "platform_technology_type": "spotted oligonucleotide", "feature_count": "16512", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log2 ratio", "reference_series": "GSE3048", "order": "none", "update_date": "Aug 09 2006", "subsets": [ { "dataset_id": "GDS2249", "description": "control", "sample_id": [ "GSM67023", "GSM67024", "GSM67025", "GSM67026", "GSM67027", "GSM67028", "GSM67029", "GSM67030", "GSM67031", "GSM67032", "GSM67033", "GSM67034" ], "type": "agent", "id": "GDS2249_1" }, { "dataset_id": "GDS2249", "description": "arsenic", "sample_id": [ "GSM67011", "GSM67012", "GSM67013", "GSM67014", "GSM67015", "GSM67016", "GSM67017", "GSM67018", "GSM67019", "GSM67020", "GSM67021", "GSM67022" ], "type": "agent", "id": "GDS2249_2" }, { "dataset_id": "GDS2249", "description": "8 h", "sample_id": [ "GSM67017", "GSM67018", "GSM67019", "GSM67029", "GSM67030", "GSM67031" ], "type": "time", "id": "GDS2249_3" }, { "dataset_id": "GDS2249", "description": "24 h", "sample_id": [ "GSM67011", "GSM67012", "GSM67013", "GSM67023", "GSM67024", "GSM67025" ], "type": "time", "id": "GDS2249_4" }, { "dataset_id": "GDS2249", "description": "48 h", "sample_id": [ "GSM67014", "GSM67015", "GSM67016", "GSM67026", "GSM67027", "GSM67028" ], "type": "time", "id": "GDS2249_5" }, { "dataset_id": "GDS2249", "description": "96 h", "sample_id": [ "GSM67020", "GSM67021", "GSM67022", "GSM67032", "GSM67033", "GSM67034" ], "type": "time", "id": "GDS2249_6" } ], "taxid": "7955", "genes": 15720, "aggregation_function": "mean", "name": "GDS2249", "version": 1.0, "instances": "24", "variables": 15723, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2249.tab", "compression": "gz" } ], [ [ "GDS225.tab" ], { "title": "Platform type/amplification method cross comparison (16K cDNA)(II)", "description": "Part of a cross comparison of DNA microarray platforms and linear amplification methods. Single round amplified liver, spleen and universal RNA analyzed on a cDNA array.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE6437", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS225", "description": "spleen", "sample_id": [ "GSM4658", "GSM4664", "GSM4668" ], "type": "tissue", "id": "GDS225_1" }, { "dataset_id": "GDS225", "description": "liver", "sample_id": [ "GSM4659", "GSM4661", "GSM4669" ], "type": "tissue", "id": "GDS225_2" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS225", "version": 1.0, "instances": "6", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS225.tab", "compression": "gz" } ], [ [ "GDS2250.tab" ], { "title": "Basal-like breast cancer tumors", "description": "Analysis of sporadic basal-like cancer (BLC), BRCA-associated breast cancer, and non-BLC tumors. Sporadic BLC are phenotypically similar to BRCA1-associated cancers. Results provide insight into the molecular pathogenesis of BLC and BRCA1-associated breast cancer.", "type": "Expression profiling by array", "pubmed_id": [ "16473279", "20400965" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE3744", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2250", "description": "normal", "sample_id": [ "GSM85513", "GSM85514", "GSM85515", "GSM85516", "GSM85517", "GSM85518", "GSM85519" ], "type": "disease state", "id": "GDS2250_1" }, { "dataset_id": "GDS2250", "description": "non-basal-like cancer", "sample_id": [ "GSM85493", "GSM85494", "GSM85495", "GSM85496", "GSM85497", "GSM85498", "GSM85499", "GSM85500", "GSM85501", "GSM85502", "GSM85503", "GSM85504", "GSM85505", "GSM85506", "GSM85507", "GSM85508", "GSM85509", "GSM85510", "GSM85511", "GSM85512" ], "type": "disease state", "id": "GDS2250_2" }, { "dataset_id": "GDS2250", "description": "BRCA1-associated cancer", "sample_id": [ "GSM85491", "GSM85492" ], "type": "disease state", "id": "GDS2250_3" }, { "dataset_id": "GDS2250", "description": "basal-like cancer", "sample_id": [ "GSM85473", "GSM85474", "GSM85475", "GSM85476", "GSM85477", "GSM85478", "GSM85479", "GSM85480", "GSM85481", "GSM85482", "GSM85483", "GSM85484", "GSM85485", "GSM85486", "GSM85487", "GSM85488", "GSM85489", "GSM85490" ], "type": "disease state", "id": "GDS2250_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2250", "version": 1.0, "instances": "47", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2250.tab", "compression": "gz" } ], [ [ "GDS2251.tab" ], { "title": "Myeloid leukemia cell lines", "description": "Comparison of myeloid leukemia cells to normal monocytes. Transcriptional status of each gene compared to its CpG methylation state. The methylation of CpG islands is associated with transcriptional repression and, in cancer, leads to the abnormal silencing of tumor suppressor genes.", "type": "Expression profiling by array", "pubmed_id": "16778185", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3280", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2251", "description": "normal", "sample_id": [ "GSM73641" ], "type": "disease state", "id": "GDS2251_1" }, { "dataset_id": "GDS2251", "description": "myeloid leukemia", "sample_id": [ "GSM73642", "GSM73644", "GSM73645" ], "type": "disease state", "id": "GDS2251_2" }, { "dataset_id": "GDS2251", "description": "monocyte", "sample_id": [ "GSM73641" ], "type": "cell line", "id": "GDS2251_3" }, { "dataset_id": "GDS2251", "description": "KG-1", "sample_id": [ "GSM73642" ], "type": "cell line", "id": "GDS2251_4" }, { "dataset_id": "GDS2251", "description": "THP-1", "sample_id": [ "GSM73644" ], "type": "cell line", "id": "GDS2251_5" }, { "dataset_id": "GDS2251", "description": "U937", "sample_id": [ "GSM73645" ], "type": "cell line", "id": "GDS2251_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2251", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2251.tab", "compression": "gz" } ], [ [ "GDS2253.tab" ], { "title": "Mammary epithelial stem cells (MG-430A)", "description": "Expression analysis of mammary stem cells, colony-forming progenitor cells and myoepithelial cells. Data reveal that the molecular features of stem cells are intermediate between progenitor and myoepithelial cells, and may provide insight into mammary stem cell self-renewal and differentiation.", "type": "Expression profiling by array", "pubmed_id": "16395311", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3711", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2253", "description": "myoepithelial cell", "sample_id": [ "GSM85697", "GSM85699", "GSM85701" ], "type": "cell type", "id": "GDS2253_1" }, { "dataset_id": "GDS2253", "description": "epithelial colony-forming cell", "sample_id": [ "GSM85691", "GSM85693", "GSM85695" ], "type": "cell type", "id": "GDS2253_2" }, { "dataset_id": "GDS2253", "description": "mammary stem cell", "sample_id": [ "GSM85703", "GSM85705", "GSM85707" ], "type": "cell type", "id": "GDS2253_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2253", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2253.tab", "compression": "gz" } ], [ [ "GDS2254.tab" ], { "title": "Mammary epithelial stem cells (MG-430B)", "description": "Analysis of mammary stem cells, colony-forming progenitor cells, and myoepithelial cells. Results provide insight into the molecular mechanisms regulating mammary stem cell self-renewal and differentiation.", "type": "Expression profiling by array", "pubmed_id": "16395311", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3711", "order": "none", "update_date": "Aug 28 2006", "subsets": [ { "dataset_id": "GDS2254", "description": "myoepithelial cell", "sample_id": [ "GSM85698", "GSM85700", "GSM85702" ], "type": "cell type", "id": "GDS2254_1" }, { "dataset_id": "GDS2254", "description": "epithelial-colony forming cell", "sample_id": [ "GSM85692", "GSM85694", "GSM85696" ], "type": "cell type", "id": "GDS2254_2" }, { "dataset_id": "GDS2254", "description": "mammary stem cell", "sample_id": [ "GSM85704", "GSM85706", "GSM85708" ], "type": "cell type", "id": "GDS2254_3" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2254", "version": 1.0, "instances": "9", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2254.tab", "compression": "gz" } ], [ [ "GDS2255.tab" ], { "title": "Transmigrated neutrophils in the alveolar space of endotoxin-exposed lung", "description": "Analysis of neutrophils that transmigrate to the alveolar space. Transmigration induced by bronchoscopic instillation of volunteers with endotoxin (LPS). Results identify differences between pulmonary and circulating neutrophils that occur early in endotoxin-induced lung inflammation.", "type": "Expression profiling by array", "pubmed_id": "16861384", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "58", "value_type": "count", "reference_series": "GSE2322", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2255", "description": "in vitro", "sample_id": [ "GSM78539", "GSM78540", "GSM78545", "GSM78546", "GSM78550", "GSM78551", "GSM78554", "GSM78555", "GSM78562", "GSM78563" ], "type": "cell type", "id": "GDS2255_1" }, { "dataset_id": "GDS2255", "description": "circulating", "sample_id": [ "GSM78522", "GSM78523", "GSM78525", "GSM78526", "GSM78528", "GSM78529", "GSM78531", "GSM78532", "GSM78533", "GSM78534", "GSM78536", "GSM78537", "GSM78541", "GSM78543", "GSM78547", "GSM78548", "GSM78552", "GSM78556", "GSM78557", "GSM78559", "GSM78560", "GSM78564", "GSM78565", "GSM43000", "GSM43002", "GSM43004", "GSM43005", "GSM43007", "GSM43008", "GSM43010", "GSM43011" ], "type": "cell type", "id": "GDS2255_2" }, { "dataset_id": "GDS2255", "description": "alveolar space", "sample_id": [ "GSM78524", "GSM78527", "GSM78530", "GSM78535", "GSM78538", "GSM78542", "GSM78544", "GSM78549", "GSM78553", "GSM78558", "GSM78561", "GSM42999", "GSM43001", "GSM43003", "GSM43006", "GSM43009", "GSM43012" ], "type": "cell type", "id": "GDS2255_3" }, { "dataset_id": "GDS2255", "description": "untreated", "sample_id": [ "GSM78523", "GSM78526", "GSM78529", "GSM78532", "GSM78534", "GSM78537", "GSM78539", "GSM78543", "GSM78545", "GSM78548", "GSM78550", "GSM78554", "GSM78557", "GSM78560", "GSM78562", "GSM78565", "GSM43005", "GSM43008", "GSM43011" ], "type": "agent", "id": "GDS2255_4" }, { "dataset_id": "GDS2255", "description": "endotoxin", "sample_id": [ "GSM78522", "GSM78524", "GSM78525", "GSM78527", "GSM78528", "GSM78530", "GSM78531", "GSM78533", "GSM78535", "GSM78536", "GSM78538", "GSM78540", "GSM78541", "GSM78542", "GSM78544", "GSM78546", "GSM78547", "GSM78549", "GSM78551", "GSM78552", "GSM78553", "GSM78555", "GSM78556", "GSM78558", "GSM78559", "GSM78561", "GSM78563", "GSM78564", "GSM42999", "GSM43000", "GSM43001", "GSM43002", "GSM43003", "GSM43004", "GSM43006", "GSM43007", "GSM43009", "GSM43010", "GSM43012" ], "type": "agent", "id": "GDS2255_5" }, { "dataset_id": "GDS2255", "description": "9", "sample_id": [ "GSM42999", "GSM43000" ], "type": "individual", "id": "GDS2255_6" }, { "dataset_id": "GDS2255", "description": "16", "sample_id": [ "GSM43001", "GSM43002" ], "type": "individual", "id": "GDS2255_7" }, { "dataset_id": "GDS2255", "description": "21", "sample_id": [ "GSM43003", "GSM43004", "GSM43005" ], "type": "individual", "id": "GDS2255_8" }, { "dataset_id": "GDS2255", "description": "32", "sample_id": [ "GSM43006", "GSM43007", "GSM43008" ], "type": "individual", "id": "GDS2255_9" }, { "dataset_id": "GDS2255", "description": "37", "sample_id": [ "GSM43009", "GSM43010", "GSM43011" ], "type": "individual", "id": "GDS2255_10" }, { "dataset_id": "GDS2255", "description": "48", "sample_id": [ "GSM43012", "GSM78522", "GSM78523" ], "type": "individual", "id": "GDS2255_11" }, { "dataset_id": "GDS2255", "description": "49", "sample_id": [ "GSM78524", "GSM78525", "GSM78526" ], "type": "individual", "id": "GDS2255_12" }, { "dataset_id": "GDS2255", "description": "53", "sample_id": [ "GSM78527", "GSM78528", "GSM78529" ], "type": "individual", "id": "GDS2255_13" }, { "dataset_id": "GDS2255", "description": "59", "sample_id": [ "GSM78530", "GSM78531", "GSM78532" ], "type": "individual", "id": "GDS2255_14" }, { "dataset_id": "GDS2255", "description": "60", "sample_id": [ "GSM78533", "GSM78534" ], "type": "individual", "id": "GDS2255_15" }, { "dataset_id": "GDS2255", "description": "70", "sample_id": [ "GSM78535", "GSM78536", "GSM78537" ], "type": "individual", "id": "GDS2255_16" }, { "dataset_id": "GDS2255", "description": "75", "sample_id": [ "GSM78538", "GSM78539", "GSM78540", "GSM78541" ], "type": "individual", "id": "GDS2255_17" }, { "dataset_id": "GDS2255", "description": "80", "sample_id": [ "GSM78542", "GSM78543" ], "type": "individual", "id": "GDS2255_18" }, { "dataset_id": "GDS2255", "description": "84", "sample_id": [ "GSM78544", "GSM78545", "GSM78546", "GSM78547", "GSM78548" ], "type": "individual", "id": "GDS2255_19" }, { "dataset_id": "GDS2255", "description": "87", "sample_id": [ "GSM78549", "GSM78550", "GSM78551", "GSM78552" ], "type": "individual", "id": "GDS2255_20" }, { "dataset_id": "GDS2255", "description": "88", "sample_id": [ "GSM78553", "GSM78554", "GSM78555", "GSM78556", "GSM78557" ], "type": "individual", "id": "GDS2255_21" }, { "dataset_id": "GDS2255", "description": "89", "sample_id": [ "GSM78558", "GSM78559", "GSM78560" ], "type": "individual", "id": "GDS2255_22" }, { "dataset_id": "GDS2255", "description": "90", "sample_id": [ "GSM78561", "GSM78562", "GSM78563", "GSM78564", "GSM78565" ], "type": "individual", "id": "GDS2255_23" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2255", "version": 1.0, "instances": "58", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2255.tab", "compression": "gz" } ], [ [ "GDS2258.tab" ], { "title": "Cardiac left ventricular hypertrophy model", "description": "Analysis of heart left ventricles (LVs) of animals with pressure overload LV hypertrophy (LVH) caused by transverse aortic constriction. Pressure overload on the heart resulting from chronic hypertension or aortic stenosis is a stimulus for LVH. Results provide insight into the pathogenesis of LVH.", "type": "Expression profiling by array", "pubmed_id": "16835353", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE2459", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2258", "description": "control", "sample_id": [ "GSM46523", "GSM46524", "GSM46526", "GSM46527", "GSM46528", "GSM46529", "GSM46530", "GSM46531", "GSM46532" ], "type": "disease state", "id": "GDS2258_1" }, { "dataset_id": "GDS2258", "description": "left ventricular hypertrophy", "sample_id": [ "GSM46533", "GSM46534", "GSM46535", "GSM46536", "GSM46537", "GSM46538" ], "type": "disease state", "id": "GDS2258_2" }, { "dataset_id": "GDS2258", "description": "male", "sample_id": [ "GSM46527", "GSM46528", "GSM46529", "GSM46530", "GSM46531", "GSM46532", "GSM46536", "GSM46537", "GSM46538" ], "type": "gender", "id": "GDS2258_3" }, { "dataset_id": "GDS2258", "description": "female", "sample_id": [ "GSM46523", "GSM46524", "GSM46526", "GSM46533", "GSM46534", "GSM46535" ], "type": "gender", "id": "GDS2258_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2258", "version": 1.0, "instances": "15", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2258.tab", "compression": "gz" } ], [ [ "GDS2259.tab" ], { "title": "Dehydration effect on the supraoptic nucleus: time course", "description": "Analysis of the supraoptic nuclei (SONs) of animals subjected to dehydration for 1 or 3 days. The antidiuretic hormone vasopressin is synthesized in the SON. Results provide insight into mechanisms underlying the morphological and functional remodeling of the SON following its osmotic activation.", "type": "Expression profiling by array", "pubmed_id": "16432224", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3131", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2259", "description": "control", "sample_id": [ "GSM69837", "GSM69838", "GSM69839" ], "type": "stress", "id": "GDS2259_1" }, { "dataset_id": "GDS2259", "description": "dehydration", "sample_id": [ "GSM69840", "GSM69841", "GSM69842", "GSM69843", "GSM69844", "GSM69845" ], "type": "stress", "id": "GDS2259_2" }, { "dataset_id": "GDS2259", "description": "control", "sample_id": [ "GSM69837", "GSM69838", "GSM69839" ], "type": "time", "id": "GDS2259_3" }, { "dataset_id": "GDS2259", "description": "1 d", "sample_id": [ "GSM69840", "GSM69841", "GSM69842" ], "type": "time", "id": "GDS2259_4" }, { "dataset_id": "GDS2259", "description": "3 d", "sample_id": [ "GSM69843", "GSM69844", "GSM69845" ], "type": "time", "id": "GDS2259_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2259", "version": 1.0, "instances": "9", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2259.tab", "compression": "gz" } ], [ [ "GDS2260.tab" ], { "title": "Red light effect on the root", "description": "Analysis of roots of seedlings exposed for 1hr to red light. Acting through phytochromes, red light controls many aspects of plant development. Many red-light signalling events have been identified in aerial portions of the plant. Results provide insight into red light-signalling elements in roots.", "type": "Expression profiling by array", "pubmed_id": "16908503", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4933", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2260", "description": "control", "sample_id": [ "GSM111156", "GSM111158", "GSM111160" ], "type": "agent", "id": "GDS2260_1" }, { "dataset_id": "GDS2260", "description": "red light", "sample_id": [ "GSM111157", "GSM111159", "GSM111161" ], "type": "agent", "id": "GDS2260_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2260", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2260.tab", "compression": "gz" } ], [ [ "GDS2261.tab" ], { "title": "Liver response to various toxins", "description": "Analysis of livers of animals 48 hours after exposure to the toxin alpha-naphthylisothiocyanate (ANIT), dimethylnitrosamine (DMN), or n-methylformamide (NMF). Results provide insight into the mechanism of toxicity of each compound.", "type": "Expression profiling by array", "pubmed_id": "18178960", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE5509", "order": "none", "update_date": "Aug 15 2006", "subsets": [ { "dataset_id": "GDS2261", "description": "control", "sample_id": [ "GSM127079", "GSM127080", "GSM127081", "GSM127082", "GSM127083", "GSM127084", "GSM127085", "GSM127086", "GSM127087" ], "type": "other", "id": "GDS2261_1" }, { "dataset_id": "GDS2261", "description": "non-toxic", "sample_id": [ "GSM127054", "GSM127055", "GSM127056", "GSM127057", "GSM127058", "GSM127064", "GSM127065", "GSM127066", "GSM127067", "GSM127068", "GSM127074", "GSM127075", "GSM127076", "GSM127077", "GSM127078" ], "type": "other", "id": "GDS2261_2" }, { "dataset_id": "GDS2261", "description": "toxic", "sample_id": [ "GSM127049", "GSM127050", "GSM127051", "GSM127052", "GSM127053", "GSM127059", "GSM127060", "GSM127061", "GSM127062", "GSM127063", "GSM127069", "GSM127070", "GSM127071", "GSM127072", "GSM127073" ], "type": "other", "id": "GDS2261_3" }, { "dataset_id": "GDS2261", "description": "untreated", "sample_id": [ "GSM127079", "GSM127080", "GSM127081", "GSM127082", "GSM127083", "GSM127084", "GSM127085", "GSM127086", "GSM127087" ], "type": "agent", "id": "GDS2261_4" }, { "dataset_id": "GDS2261", "description": "caerulein", "sample_id": [ "GSM127054", "GSM127055", "GSM127056", "GSM127057", "GSM127058" ], "type": "agent", "id": "GDS2261_5" }, { "dataset_id": "GDS2261", "description": "dinitrophenol", "sample_id": [ "GSM127064", "GSM127065", "GSM127066", "GSM127067", "GSM127068" ], "type": "agent", "id": "GDS2261_6" }, { "dataset_id": "GDS2261", "description": "rosiglitazone", "sample_id": [ "GSM127074", "GSM127075", "GSM127076", "GSM127077", "GSM127078" ], "type": "agent", "id": "GDS2261_7" }, { "dataset_id": "GDS2261", "description": "alpha-naphthylisothiocyanate", "sample_id": [ "GSM127049", "GSM127050", "GSM127051", "GSM127052", "GSM127053" ], "type": "agent", "id": "GDS2261_8" }, { "dataset_id": "GDS2261", "description": "dimethylnitrosamine", "sample_id": [ "GSM127059", "GSM127060", "GSM127061", "GSM127062", "GSM127063" ], "type": "agent", "id": "GDS2261_9" }, { "dataset_id": "GDS2261", "description": "n-methylformamide", "sample_id": [ "GSM127069", "GSM127070", "GSM127071", "GSM127072", "GSM127073" ], "type": "agent", "id": "GDS2261_10" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2261", "version": 1.0, "instances": "39", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2261.tab", "compression": "gz" } ], [ [ "GDS2263.tab" ], { "title": "Kidney isografts from brain dead donors", "description": "Analysis of isografted kidneys from brain dead donors. Brain death in donors triggers nonspecific inflammatory events that increase the kinetics and intensity of the immunologic response in recipients after kidney transplantation. Results provide insight into the mechanisms underlying this response.", "type": "Expression profiling by array", "pubmed_id": "15808645", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log10 ratio", "reference_series": "GSE5104", "order": "none", "update_date": "Aug 15 2006", "subsets": [ { "dataset_id": "GDS2263", "description": "before transplantation", "sample_id": [ "GSM115033", "GSM115034", "GSM115039", "GSM115040", "GSM115043", "GSM115044" ], "type": "protocol", "id": "GDS2263_1" }, { "dataset_id": "GDS2263", "description": "after transplantation", "sample_id": [ "GSM115035", "GSM115036", "GSM115037", "GSM115038", "GSM115041", "GSM115042" ], "type": "protocol", "id": "GDS2263_2" }, { "dataset_id": "GDS2263", "description": "living", "sample_id": [ "GSM115034", "GSM115036", "GSM115041", "GSM115042", "GSM115043", "GSM115044" ], "type": "disease state", "id": "GDS2263_3" }, { "dataset_id": "GDS2263", "description": "brain dead", "sample_id": [ "GSM115033", "GSM115035", "GSM115037", "GSM115038", "GSM115039", "GSM115040" ], "type": "disease state", "id": "GDS2263_4" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2263", "version": 1.0, "instances": "12", "variables": 17253, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2263.tab", "compression": "gz" } ], [ [ "GDS2264.tab" ], { "title": "Heart response to injury: time course", "description": "Analysis of adult C57BL/6 or MRL/MpJ hearts at various time points up to 60 days following left anterior descending (LAD) coronary artery ligation-induced myocardial injury. Results provide insight into the reparative myocardial mechanisms in the two strains following injury.", "type": "Expression profiling by array", "pubmed_id": "17327495", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4710", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2264", "description": "C57BL/6", "sample_id": [ "GSM106378", "GSM106380", "GSM106382", "GSM106384" ], "type": "strain", "id": "GDS2264_1" }, { "dataset_id": "GDS2264", "description": "MRL/MpJ", "sample_id": [ "GSM106379", "GSM106381", "GSM106383", "GSM106385" ], "type": "strain", "id": "GDS2264_2" }, { "dataset_id": "GDS2264", "description": "uninjured", "sample_id": [ "GSM106378", "GSM106379" ], "type": "disease state", "id": "GDS2264_3" }, { "dataset_id": "GDS2264", "description": "injured", "sample_id": [ "GSM106380", "GSM106381", "GSM106382", "GSM106383", "GSM106384", "GSM106385" ], "type": "disease state", "id": "GDS2264_4" }, { "dataset_id": "GDS2264", "description": "control", "sample_id": [ "GSM106378", "GSM106379" ], "type": "time", "id": "GDS2264_5" }, { "dataset_id": "GDS2264", "description": "3 d", "sample_id": [ "GSM106380", "GSM106381" ], "type": "time", "id": "GDS2264_6" }, { "dataset_id": "GDS2264", "description": "30 d", "sample_id": [ "GSM106382", "GSM106383" ], "type": "time", "id": "GDS2264_7" }, { "dataset_id": "GDS2264", "description": "60 d", "sample_id": [ "GSM106384", "GSM106385" ], "type": "time", "id": "GDS2264_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2264", "version": 1.0, "instances": "8", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2264.tab", "compression": "gz" } ], [ [ "GDS2265.tab" ], { "title": "Pyruvate effect on muscle cells", "description": "Analysis of C2C12 myoblasts treated with supraphysiological levels of sodium pyruvate for 72 hours. Pyruvate increases mitochondrial biogenesis in muscle myoblasts. Results provide insight into the impact of altering energy provision on mitochondrial biogenesis in muscle cells.", "type": "Expression profiling by array", "pubmed_id": "17182725", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5497", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2265", "description": "untreated", "sample_id": [ "GSM126586", "GSM126587", "GSM126588" ], "type": "agent", "id": "GDS2265_1" }, { "dataset_id": "GDS2265", "description": "sodium pyruvate", "sample_id": [ "GSM126589", "GSM126590", "GSM126591" ], "type": "agent", "id": "GDS2265_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2265", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2265.tab", "compression": "gz" } ], [ [ "GDS2266.tab" ], { "title": "CD4/CD8 double positive thymocyte response to glucocorticoid", "description": "Analysis of CD4/CD8 double positive (DP) thymocytes treated with the glucocorticoid (GC) dexamethasone for 3 hours. GC treatment induces the apoptosis of CD4/CD8 DP thymocytes. Results provide insight into the molecular mechanisms underlying this apoptotic effect.", "type": "Expression profiling by array", "pubmed_id": "16914556", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5463", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2266", "description": "control", "sample_id": [ "GSM124988", "GSM124989" ], "type": "agent", "id": "GDS2266_1" }, { "dataset_id": "GDS2266", "description": "dexamethasone", "sample_id": [ "GSM124990", "GSM124991" ], "type": "agent", "id": "GDS2266_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2266", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2266.tab", "compression": "gz" } ], [ [ "GDS2267.tab" ], { "title": "Metabolic cycle: time course", "description": "Analysis of nutrient-limited continuous-culture cells at 12 25-minute intervals for 3 cycles. Cells grown under such conditions exhibit robust, periodic cycles in the form of respiratory bursts. Results provide insight into molecular mechanisms responsible for controlling metabolic oscillations.", "type": "Expression profiling by array", "pubmed_id": "16254148", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE3431", "order": "none", "update_date": "Sep 06 2006", "subsets": [ { "dataset_id": "GDS2267", "description": "cycle 1", "sample_id": [ "GSM77298", "GSM77299", "GSM77300", "GSM77301", "GSM77302", "GSM77303", "GSM77304", "GSM77305", "GSM77306", "GSM77307", "GSM77308", "GSM77309" ], "type": "protocol", "id": "GDS2267_1" }, { "dataset_id": "GDS2267", "description": "cycle 2", "sample_id": [ "GSM77310", "GSM77311", "GSM77312", "GSM77313", "GSM77314", "GSM77315", "GSM77316", "GSM77317", "GSM77318", "GSM77319", "GSM77320", "GSM77321" ], "type": "protocol", "id": "GDS2267_2" }, { "dataset_id": "GDS2267", "description": "cycle 3", "sample_id": [ "GSM77322", "GSM77323", "GSM77324", "GSM77325", "GSM77326", "GSM77327", "GSM77328", "GSM77329", "GSM77330", "GSM77331", "GSM77332", "GSM77333" ], "type": "protocol", "id": "GDS2267_3" }, { "dataset_id": "GDS2267", "description": "interval 1", "sample_id": [ "GSM77298", "GSM77310", "GSM77322" ], "type": "time", "id": "GDS2267_4" }, { "dataset_id": "GDS2267", "description": "interval 2", "sample_id": [ "GSM77299", "GSM77311", "GSM77323" ], "type": "time", "id": "GDS2267_5" }, { "dataset_id": "GDS2267", "description": "interval 3", "sample_id": [ "GSM77300", "GSM77312", "GSM77324" ], "type": "time", "id": "GDS2267_6" }, { "dataset_id": "GDS2267", "description": "interval 4", "sample_id": [ "GSM77301", "GSM77313", "GSM77325" ], "type": "time", "id": "GDS2267_7" }, { "dataset_id": "GDS2267", "description": "interval 5", "sample_id": [ "GSM77302", "GSM77314", "GSM77326" ], "type": "time", "id": "GDS2267_8" }, { "dataset_id": "GDS2267", "description": "interval 6", "sample_id": [ "GSM77303", "GSM77315", "GSM77327" ], "type": "time", "id": "GDS2267_9" }, { "dataset_id": "GDS2267", "description": "interval 7", "sample_id": [ "GSM77304", "GSM77316", "GSM77328" ], "type": "time", "id": "GDS2267_10" }, { "dataset_id": "GDS2267", "description": "interval 8", "sample_id": [ "GSM77305", "GSM77317", "GSM77329" ], "type": "time", "id": "GDS2267_11" }, { "dataset_id": "GDS2267", "description": "interval 9", "sample_id": [ "GSM77306", "GSM77318", "GSM77330" ], "type": "time", "id": "GDS2267_12" }, { "dataset_id": "GDS2267", "description": "interval 10", "sample_id": [ "GSM77307", "GSM77319", "GSM77331" ], "type": "time", "id": "GDS2267_13" }, { "dataset_id": "GDS2267", "description": "interval 11", "sample_id": [ "GSM77308", "GSM77320", "GSM77332" ], "type": "time", "id": "GDS2267_14" }, { "dataset_id": "GDS2267", "description": "interval 12", "sample_id": [ "GSM77309", "GSM77321", "GSM77333" ], "type": "time", "id": "GDS2267_15" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2267", "version": 1.0, "instances": "36", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2267.tab", "compression": "gz" } ], [ [ "GDS2268.tab" ], { "title": "Ductus arteriosus response to birth and oxygen (RG-U34A)", "description": "Analysis of ductus arteriosus (DA) from normoxic and hyperoxic fetuses, and normoxic newborns. Aorta from normoxic fetuses and newborns also examined. Results provide insight into the role of oxygen and the birth process on the initial functional and subsequent permanent closure of DA.", "type": "Expression profiling by array", "pubmed_id": "16418320", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3290", "order": "none", "update_date": "Sep 06 2006", "subsets": [ { "dataset_id": "GDS2268", "description": "aorta", "sample_id": [ "GSM73652", "GSM73689" ], "type": "tissue", "id": "GDS2268_1" }, { "dataset_id": "GDS2268", "description": "ductus arteriosus", "sample_id": [ "GSM73790", "GSM73791", "GSM73801" ], "type": "tissue", "id": "GDS2268_2" }, { "dataset_id": "GDS2268", "description": "prenatal", "sample_id": [ "GSM73652", "GSM73790", "GSM73791" ], "type": "development stage", "id": "GDS2268_3" }, { "dataset_id": "GDS2268", "description": "postnatal", "sample_id": [ "GSM73689", "GSM73801" ], "type": "development stage", "id": "GDS2268_4" }, { "dataset_id": "GDS2268", "description": "normoxic", "sample_id": [ "GSM73652", "GSM73689", "GSM73790", "GSM73801" ], "type": "protocol", "id": "GDS2268_5" }, { "dataset_id": "GDS2268", "description": "hyperoxic", "sample_id": [ "GSM73791" ], "type": "protocol", "id": "GDS2268_6" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2268", "version": 1.0, "instances": "5", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2268.tab", "compression": "gz" } ], [ [ "GDS2269.tab" ], { "title": "Ductus arteriosus response to birth and oxygen (RG-U34B)", "description": "Analysis of ductus arteriosus (DA) from normoxic and hyperoxic fetuses, and normoxic newborns. Aorta from normoxic fetuses and newborns also examined. Results provide insight into the role of oxygen and the birth process on the initial functional and subsequent permanent closure of DA.", "type": "Expression profiling by array", "pubmed_id": "16418320", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3290", "order": "none", "update_date": "Sep 06 2006", "subsets": [ { "dataset_id": "GDS2269", "description": "aorta", "sample_id": [ "GSM74049", "GSM74050" ], "type": "tissue", "id": "GDS2269_1" }, { "dataset_id": "GDS2269", "description": "ductus arteriosus", "sample_id": [ "GSM74051", "GSM74052", "GSM74053" ], "type": "tissue", "id": "GDS2269_2" }, { "dataset_id": "GDS2269", "description": "prenatal", "sample_id": [ "GSM74049", "GSM74051", "GSM74052" ], "type": "development stage", "id": "GDS2269_3" }, { "dataset_id": "GDS2269", "description": "postnatal", "sample_id": [ "GSM74050", "GSM74053" ], "type": "development stage", "id": "GDS2269_4" }, { "dataset_id": "GDS2269", "description": "normoxic", "sample_id": [ "GSM74049", "GSM74050", "GSM74051", "GSM74053" ], "type": "protocol", "id": "GDS2269_5" }, { "dataset_id": "GDS2269", "description": "hyperoxic", "sample_id": [ "GSM74052" ], "type": "protocol", "id": "GDS2269_6" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS2269", "version": 1.0, "instances": "5", "variables": 7622, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2269.tab", "compression": "gz" } ], [ [ "GDS227.tab" ], { "title": "Platform type/amplification method cross comparison (U74Av2)", "description": "Part of a cross comparison of DNA microarray platforms and linear amplification methods. Single round amplified liver and spleen RNA analyzed on Affymetrix array.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6436", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS227", "description": "liver", "sample_id": [ "GSM4652", "GSM4653" ], "type": "tissue", "id": "GDS227_1" }, { "dataset_id": "GDS227", "description": "spleen", "sample_id": [ "GSM4654", "GSM4655" ], "type": "tissue", "id": "GDS227_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS227", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS227.tab", "compression": "gz" } ], [ [ "GDS2270.tab" ], { "title": "Ductus arteriosus response to birth and oxygen (RG-U34C)", "description": "Analysis of ductus arteriosus (DA) from normoxic and hyperoxic fetuses, and normoxic newborns. Aorta from normoxic fetuses and newborns also examined. Results provide insight into the role of oxygen and the birth process on the initial functional and subsequent permanent closure of DA.", "type": "Expression profiling by array", "pubmed_id": "16418320", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE3290", "order": "none", "update_date": "Sep 06 2006", "subsets": [ { "dataset_id": "GDS2270", "description": "aorta", "sample_id": [ "GSM74054", "GSM74055" ], "type": "tissue", "id": "GDS2270_1" }, { "dataset_id": "GDS2270", "description": "ductus arteriosus", "sample_id": [ "GSM74056", "GSM74058", "GSM74059" ], "type": "tissue", "id": "GDS2270_2" }, { "dataset_id": "GDS2270", "description": "prenatal", "sample_id": [ "GSM74054", "GSM74056", "GSM74059" ], "type": "development stage", "id": "GDS2270_3" }, { "dataset_id": "GDS2270", "description": "postnatal", "sample_id": [ "GSM74055", "GSM74058" ], "type": "development stage", "id": "GDS2270_4" }, { "dataset_id": "GDS2270", "description": "normoxic", "sample_id": [ "GSM74054", "GSM74055", "GSM74058", "GSM74059" ], "type": "protocol", "id": "GDS2270_5" }, { "dataset_id": "GDS2270", "description": "hyperoxic", "sample_id": [ "GSM74056" ], "type": "protocol", "id": "GDS2270_6" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS2270", "version": 1.0, "instances": "5", "variables": 7586, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2270.tab", "compression": "gz" } ], [ [ "GDS2272.tab" ], { "title": "Heat stress response: time course", "description": "Analysis of heat-resistant females at various time points up to 64 hours following short-term heat treatment at 36 degrees C for 1 hour. Results provide insight into the cellular response to heat stress.", "type": "Expression profiling by array", "pubmed_id": "16333985", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE5147", "order": "none", "update_date": "Sep 05 2006", "subsets": [ { "dataset_id": "GDS2272", "description": "control", "sample_id": [ "GSM116143", "GSM116144", "GSM116145", "GSM116146", "GSM116147", "GSM116148", "GSM116149", "GSM116150", "GSM116151", "GSM116161", "GSM116162", "GSM116163", "GSM116164", "GSM116165", "GSM116166", "GSM116167", "GSM116168", "GSM116169" ], "type": "other", "id": "GDS2272_1" }, { "dataset_id": "GDS2272", "description": "heat resistant", "sample_id": [ "GSM116152", "GSM116153", "GSM116154", "GSM116155", "GSM116156", "GSM116157", "GSM116158", "GSM116159", "GSM116160", "GSM116170", "GSM116171", "GSM116172", "GSM116173", "GSM116174", "GSM116175", "GSM116176", "GSM116177", "GSM116178" ], "type": "other", "id": "GDS2272_2" }, { "dataset_id": "GDS2272", "description": "-1 h", "sample_id": [ "GSM116143", "GSM116152", "GSM116161", "GSM116170" ], "type": "time", "id": "GDS2272_3" }, { "dataset_id": "GDS2272", "description": "0.25 h", "sample_id": [ "GSM116144", "GSM116153", "GSM116162", "GSM116171" ], "type": "time", "id": "GDS2272_4" }, { "dataset_id": "GDS2272", "description": "1 h", "sample_id": [ "GSM116145", "GSM116154", "GSM116163", "GSM116172" ], "type": "time", "id": "GDS2272_5" }, { "dataset_id": "GDS2272", "description": "2 h", "sample_id": [ "GSM116146", "GSM116155", "GSM116164", "GSM116173" ], "type": "time", "id": "GDS2272_6" }, { "dataset_id": "GDS2272", "description": "4 h", "sample_id": [ "GSM116147", "GSM116156", "GSM116165", "GSM116174" ], "type": "time", "id": "GDS2272_7" }, { "dataset_id": "GDS2272", "description": "8 h", "sample_id": [ "GSM116148", "GSM116157", "GSM116166", "GSM116175" ], "type": "time", "id": "GDS2272_8" }, { "dataset_id": "GDS2272", "description": "16 h", "sample_id": [ "GSM116149", "GSM116158", "GSM116167", "GSM116176" ], "type": "time", "id": "GDS2272_9" }, { "dataset_id": "GDS2272", "description": "32 h", "sample_id": [ "GSM116150", "GSM116159", "GSM116168", "GSM116177" ], "type": "time", "id": "GDS2272_10" }, { "dataset_id": "GDS2272", "description": "64 h", "sample_id": [ "GSM116151", "GSM116160", "GSM116169", "GSM116178" ], "type": "time", "id": "GDS2272_11" }, { "dataset_id": "GDS2272", "description": "untreated", "sample_id": [ "GSM116143", "GSM116152", "GSM116161", "GSM116170" ], "type": "stress", "id": "GDS2272_12" }, { "dataset_id": "GDS2272", "description": "36 degrees C", "sample_id": [ "GSM116144", "GSM116153", "GSM116162", "GSM116171", "GSM116145", "GSM116154", "GSM116163", "GSM116172", "GSM116146", "GSM116155", "GSM116164", "GSM116173", "GSM116147", "GSM116156", "GSM116165", "GSM116174", "GSM116148", "GSM116157", "GSM116166", "GSM116175", "GSM116149", "GSM116158", "GSM116167", "GSM116176", "GSM116150", "GSM116159", "GSM116168", "GSM116177", "GSM116151", "GSM116160", "GSM116169", "GSM116178" ], "type": "stress", "id": "GDS2272_13" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2272", "version": 1.0, "instances": "36", "variables": 12131, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2272.tab", "compression": "gz" } ], [ [ "GDS2274.tab" ], { "title": "Transcription factor Aire deficiency effect on medullary thymic epithelial cells", "description": "Analysis of transcription factor Aire deficient medullary thymic epithelial cells with low or high CD80 expression. Aberrent expression of tissue-restricted antigens, called promiscuous gene expression (PGE), is a property of the thymic stroma. Results provide insight into the role of Aire in PGE.", "type": "Expression profiling by array", "pubmed_id": "15983066", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2585", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2274", "description": "wild type", "sample_id": [ "GSM49735", "GSM49736", "GSM49737", "GSM49738" ], "type": "genotype/variation", "id": "GDS2274_1" }, { "dataset_id": "GDS2274", "description": "Aire knockout", "sample_id": [ "GSM49731", "GSM49732", "GSM49733", "GSM49734" ], "type": "genotype/variation", "id": "GDS2274_2" }, { "dataset_id": "GDS2274", "description": "CD80 low", "sample_id": [ "GSM49733", "GSM49734", "GSM49737", "GSM49738" ], "type": "cell type", "id": "GDS2274_3" }, { "dataset_id": "GDS2274", "description": "CD80 high", "sample_id": [ "GSM49731", "GSM49732", "GSM49735", "GSM49736" ], "type": "cell type", "id": "GDS2274_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2274", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2274.tab", "compression": "gz" } ], [ [ "GDS2276.tab" ], { "title": "Embryonic stem cell line response to the conditional expression of neurogenin 3", "description": "Analysis of transgenic embryonic stem cells induced with doxycycline to express neurogenin 3 (Ngn3) and differentiated for 3 or 10 days as embryoid bodies. Ngn3 is required for pancreatic islet development. Results provide insight into Ngn3-regulated molecular events during development.", "type": "Expression profiling by array", "pubmed_id": "16809427", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3653", "order": "none", "update_date": "Oct 24 2006", "subsets": [ { "dataset_id": "GDS2276", "description": "parental Ainv15 cell line", "sample_id": [ "GSM85006", "GSM85007", "GSM85008", "GSM85009", "GSM85023", "GSM85024" ], "type": "cell line", "id": "GDS2276_1" }, { "dataset_id": "GDS2276", "description": "inducible Ngn3 cell line", "sample_id": [ "GSM85011", "GSM85012", "GSM85014", "GSM85016", "GSM85017", "GSM85018", "GSM85019", "GSM85020", "GSM85021", "GSM85022" ], "type": "cell line", "id": "GDS2276_2" }, { "dataset_id": "GDS2276", "description": "undifferentiated embryonic stem cells", "sample_id": [ "GSM85008", "GSM85009" ], "type": "development stage", "id": "GDS2276_3" }, { "dataset_id": "GDS2276", "description": "differentiated embryonic stem cells", "sample_id": [ "GSM85021", "GSM85022" ], "type": "development stage", "id": "GDS2276_4" }, { "dataset_id": "GDS2276", "description": "embryoid bodies", "sample_id": [ "GSM85006", "GSM85007", "GSM85011", "GSM85012", "GSM85014", "GSM85016", "GSM85017", "GSM85018", "GSM85019", "GSM85020", "GSM85023", "GSM85024" ], "type": "development stage", "id": "GDS2276_5" }, { "dataset_id": "GDS2276", "description": "0 days", "sample_id": [ "GSM85008", "GSM85009" ], "type": "time", "id": "GDS2276_6" }, { "dataset_id": "GDS2276", "description": "3 days", "sample_id": [ "GSM85011", "GSM85012", "GSM85014", "GSM85016", "GSM85021", "GSM85022", "GSM85023", "GSM85024" ], "type": "time", "id": "GDS2276_7" }, { "dataset_id": "GDS2276", "description": "10 days", "sample_id": [ "GSM85006", "GSM85007", "GSM85017", "GSM85018", "GSM85019", "GSM85020" ], "type": "time", "id": "GDS2276_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2276", "version": 1.0, "instances": "16", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2276.tab", "compression": "gz" } ], [ [ "GDS2277.tab" ], { "title": "Ribonucleoprotein- and polysome-associated mRNAs of the testis: time-course", "description": "Analysis of ribonucleoprotein (RNP) and polysome fractions of prepuberal and adult testes. Protein synthesis occurs on polysomes and translationally inactive mRNAs are sequestered as RNPs. Results provide insight into the translation state of individual mRNAs as spermatogenesis proceeds.", "type": "Expression profiling by array", "pubmed_id": "16682651", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4711", "order": "none", "update_date": "Oct 23 2006", "subsets": [ { "dataset_id": "GDS2277", "description": "17 d", "sample_id": [ "GSM106408", "GSM106409", "GSM106410", "GSM106411", "GSM106412", "GSM106413" ], "type": "age", "id": "GDS2277_1" }, { "dataset_id": "GDS2277", "description": "22 d", "sample_id": [ "GSM106414", "GSM106415", "GSM106416", "GSM106417", "GSM106418", "GSM106419" ], "type": "age", "id": "GDS2277_2" }, { "dataset_id": "GDS2277", "description": "60 - 80 d", "sample_id": [ "GSM106420", "GSM106421", "GSM106422", "GSM106423", "GSM106424", "GSM106425" ], "type": "age", "id": "GDS2277_3" }, { "dataset_id": "GDS2277", "description": "polysome", "sample_id": [ "GSM106408", "GSM106409", "GSM106410", "GSM106414", "GSM106415", "GSM106416", "GSM106420", "GSM106421", "GSM106422" ], "type": "other", "id": "GDS2277_4" }, { "dataset_id": "GDS2277", "description": "RNP", "sample_id": [ "GSM106411", "GSM106412", "GSM106413", "GSM106417", "GSM106418", "GSM106419", "GSM106423", "GSM106424", "GSM106425" ], "type": "other", "id": "GDS2277_5" }, { "dataset_id": "GDS2277", "description": "prepuberal", "sample_id": [ "GSM106408", "GSM106409", "GSM106410", "GSM106411", "GSM106412", "GSM106413", "GSM106414", "GSM106415", "GSM106416", "GSM106417", "GSM106418", "GSM106419" ], "type": "development stage", "id": "GDS2277_6" }, { "dataset_id": "GDS2277", "description": "adult", "sample_id": [ "GSM106420", "GSM106421", "GSM106422", "GSM106423", "GSM106424", "GSM106425" ], "type": "development stage", "id": "GDS2277_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2277", "version": 1.0, "instances": "18", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2277.tab", "compression": "gz" } ], [ [ "GDS2281.tab" ], { "title": "Uniparental duplication of chromosome 7 regions effect on embryo and newborn brain (MG-430B)", "description": "Analysis of embryos and brains of newborns with maternal or paternal uniparental duplications (UpDps) of chromosome 7 regions. Translocation used to produce UpDps. Results provide insight into the extent and distribution of imprinted genes.", "type": "Expression profiling by array", "pubmed_id": [ "16855283", "17967881" ], "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4870", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2281", "description": "newborn brain", "sample_id": [ "GSM109531", "GSM109532" ], "type": "tissue", "id": "GDS2281_1" }, { "dataset_id": "GDS2281", "description": "13.5 dpc embryo", "sample_id": [ "GSM109547", "GSM109548" ], "type": "tissue", "id": "GDS2281_2" }, { "dataset_id": "GDS2281", "description": "maternal uniparental duplication", "sample_id": [ "GSM109531", "GSM109547" ], "type": "genotype/variation", "id": "GDS2281_3" }, { "dataset_id": "GDS2281", "description": "paternal uniparental duplication", "sample_id": [ "GSM109532", "GSM109548" ], "type": "genotype/variation", "id": "GDS2281_4" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2281", "version": 1.0, "instances": "4", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2281.tab", "compression": "gz" } ], [ [ "GDS2282.tab" ], { "title": "Uniparental duplication of chromosome 7 regions effect on various tissues (MG-U74A)", "description": "Analysis of various tissues from animals bearing maternal or paternal uniparental duplications (UpDps) of chromosome 7 regions. Translocation used to produce UpDps proximal and distal to the breakpoint. Results provide insight into the extent and distribution of imprinted genes.", "type": "Expression profiling by array", "pubmed_id": [ "16855283", "17967881" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE4870", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2282", "description": "newborn carcass", "sample_id": [ "GSM109533", "GSM109534" ], "type": "tissue", "id": "GDS2282_1" }, { "dataset_id": "GDS2282", "description": "13.5 dpc embryo", "sample_id": [ "GSM109539", "GSM109540" ], "type": "tissue", "id": "GDS2282_2" }, { "dataset_id": "GDS2282", "description": "newborn heart", "sample_id": [ "GSM109549", "GSM109550" ], "type": "tissue", "id": "GDS2282_3" }, { "dataset_id": "GDS2282", "description": "newborn liver", "sample_id": [ "GSM109553", "GSM109554", "GSM109559" ], "type": "tissue", "id": "GDS2282_4" }, { "dataset_id": "GDS2282", "description": "13.5 dpc placenta", "sample_id": [ "GSM109562", "GSM109563", "GSM109568", "GSM109569" ], "type": "tissue", "id": "GDS2282_5" }, { "dataset_id": "GDS2282", "description": "control", "sample_id": [ "GSM109540", "GSM109554", "GSM109563" ], "type": "genotype/variation", "id": "GDS2282_6" }, { "dataset_id": "GDS2282", "description": "maternal UpDp7 proximal", "sample_id": [ "GSM109533", "GSM109549", "GSM109553", "GSM109568" ], "type": "genotype/variation", "id": "GDS2282_7" }, { "dataset_id": "GDS2282", "description": "maternal UpDp7 distal", "sample_id": [ "GSM109539", "GSM109562" ], "type": "genotype/variation", "id": "GDS2282_8" }, { "dataset_id": "GDS2282", "description": "paternal UpDp7 proximal", "sample_id": [ "GSM109534", "GSM109550", "GSM109559", "GSM109569" ], "type": "genotype/variation", "id": "GDS2282_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2282", "version": 1.0, "instances": "13", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2282.tab", "compression": "gz" } ], [ [ "GDS2283.tab" ], { "title": "Uniparental duplication of chromosome 7 regions effect on embryo and newborn brain (MG-430A)", "description": "Analysis of embryos and brains of newborns with maternal or paternal uniparental duplications (UpDps) of chromosome 7 regions. Translocation used to produce UpDps. Results provide insight into the extent and distribution of imprinted genes.", "type": "Expression profiling by array", "pubmed_id": [ "16855283", "17967881" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4870", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2283", "description": "newborn brain", "sample_id": [ "GSM109529", "GSM109530" ], "type": "tissue", "id": "GDS2283_1" }, { "dataset_id": "GDS2283", "description": "13.5 dpc embryo", "sample_id": [ "GSM109545", "GSM109546" ], "type": "tissue", "id": "GDS2283_2" }, { "dataset_id": "GDS2283", "description": "maternal unipaternal duplication", "sample_id": [ "GSM109529", "GSM109545" ], "type": "genotype/variation", "id": "GDS2283_3" }, { "dataset_id": "GDS2283", "description": "paternal unipaternal duplication", "sample_id": [ "GSM109530", "GSM109546" ], "type": "genotype/variation", "id": "GDS2283_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2283", "version": 1.0, "instances": "4", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2283.tab", "compression": "gz" } ], [ [ "GDS2284.tab" ], { "title": "Uniparental duplication of chromosome 7 regions effect on various tissues (MG-U74B)", "description": "Analysis of various tissues from animals bearing maternal or paternal uniparental duplications (UpDps) of chromosome 7 regions. Translocation used to produce UpDps proximal and distal to the breakpoint. Results provide insight into the extent and distribution of imprinted genes.", "type": "Expression profiling by array", "pubmed_id": [ "16855283", "17967881" ], "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE4870", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2284", "description": "newborn carcass", "sample_id": [ "GSM109535", "GSM109536" ], "type": "tissue", "id": "GDS2284_1" }, { "dataset_id": "GDS2284", "description": "13.5 dpc embryo", "sample_id": [ "GSM109541", "GSM109542" ], "type": "tissue", "id": "GDS2284_2" }, { "dataset_id": "GDS2284", "description": "newborn heart", "sample_id": [ "GSM109551", "GSM109552" ], "type": "tissue", "id": "GDS2284_3" }, { "dataset_id": "GDS2284", "description": "newborn liver", "sample_id": [ "GSM109555", "GSM109556", "GSM109560" ], "type": "tissue", "id": "GDS2284_4" }, { "dataset_id": "GDS2284", "description": "13.5 dpc placenta", "sample_id": [ "GSM109564", "GSM109565", "GSM109570", "GSM109571" ], "type": "tissue", "id": "GDS2284_5" }, { "dataset_id": "GDS2284", "description": "control", "sample_id": [ "GSM109542", "GSM109556", "GSM109565" ], "type": "genotype/variation", "id": "GDS2284_6" }, { "dataset_id": "GDS2284", "description": "maternal UpDp7 proximal", "sample_id": [ "GSM109535", "GSM109551", "GSM109555", "GSM109570" ], "type": "genotype/variation", "id": "GDS2284_7" }, { "dataset_id": "GDS2284", "description": "maternal UpDp7 distal", "sample_id": [ "GSM109541", "GSM109564" ], "type": "genotype/variation", "id": "GDS2284_8" }, { "dataset_id": "GDS2284", "description": "paternal UpDp7 proximal", "sample_id": [ "GSM109536", "GSM109552", "GSM109560", "GSM109571" ], "type": "genotype/variation", "id": "GDS2284_9" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2284", "version": 1.0, "instances": "13", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2284.tab", "compression": "gz" } ], [ [ "GDS2285.tab" ], { "title": "Uniparental duplication of chromosome 7 regions effect on various tissues (MG-U74C)", "description": "Analysis of various tissues from animals bearing maternal or paternal uniparental duplications (UpDps) of chromosome 7 regions. Translocation used to produce UpDps proximal and distal to the breakpoint. Results provide insight into the extent and distribution of imprinted genes.", "type": "Expression profiling by array", "pubmed_id": [ "16855283", "17967881" ], "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE4870", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2285", "description": "newborn carcass", "sample_id": [ "GSM109537", "GSM109538" ], "type": "tissue", "id": "GDS2285_1" }, { "dataset_id": "GDS2285", "description": "13.5 dpc embryo", "sample_id": [ "GSM109543", "GSM109544" ], "type": "tissue", "id": "GDS2285_2" }, { "dataset_id": "GDS2285", "description": "newborn liver", "sample_id": [ "GSM109557", "GSM109558", "GSM109561" ], "type": "tissue", "id": "GDS2285_3" }, { "dataset_id": "GDS2285", "description": "13.5 dpc placenta", "sample_id": [ "GSM109566", "GSM109567", "GSM109572", "GSM109573" ], "type": "tissue", "id": "GDS2285_4" }, { "dataset_id": "GDS2285", "description": "control", "sample_id": [ "GSM109544", "GSM109558", "GSM109567" ], "type": "genotype/variation", "id": "GDS2285_5" }, { "dataset_id": "GDS2285", "description": "maternal UpDp7 proximal", "sample_id": [ "GSM109537", "GSM109557", "GSM109572" ], "type": "genotype/variation", "id": "GDS2285_6" }, { "dataset_id": "GDS2285", "description": "maternal UpDp7 distal", "sample_id": [ "GSM109543", "GSM109566" ], "type": "genotype/variation", "id": "GDS2285_7" }, { "dataset_id": "GDS2285", "description": "paternal UpDp7 proximal", "sample_id": [ "GSM109538", "GSM109561", "GSM109573" ], "type": "genotype/variation", "id": "GDS2285_8" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2285", "version": 1.0, "instances": "11", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2285.tab", "compression": "gz" } ], [ [ "GDS2287.tab" ], { "title": "Airway epithelial cell response to Pseudomonas aeruginosa rsmA mutant infection", "description": "Analysis of airway epithelial cells infected with Pseudomonas aeruginosa PAO1 or the rsmA mutant. RsmA is a small RNA-binding protein that plays a role in the regulation of virulence-related genes in P. aeruginosa. Results provide insight into the influence of RsmA-regulated functions on the host.", "type": "Expression profiling by array", "pubmed_id": "16988269", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4485", "order": "none", "update_date": "Sep 18 2006", "subsets": [ { "dataset_id": "GDS2287", "description": "uninfected", "sample_id": [ "GSM100826", "GSM100828" ], "type": "infection", "id": "GDS2287_1" }, { "dataset_id": "GDS2287", "description": "infected", "sample_id": [ "GSM100829", "GSM100830", "GSM100831", "GSM100832" ], "type": "infection", "id": "GDS2287_2" }, { "dataset_id": "GDS2287", "description": "control", "sample_id": [ "GSM100826", "GSM100828" ], "type": "genotype/variation", "id": "GDS2287_3" }, { "dataset_id": "GDS2287", "description": "PAO1 wild type", "sample_id": [ "GSM100829", "GSM100830" ], "type": "genotype/variation", "id": "GDS2287_4" }, { "dataset_id": "GDS2287", "description": "rsmA mutant", "sample_id": [ "GSM100831", "GSM100832" ], "type": "genotype/variation", "id": "GDS2287_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2287", "version": 1.0, "instances": "6", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2287.tab", "compression": "gz" } ], [ [ "GDS2288.tab" ], { "title": "Lactoperoxidase effect on the small intestine", "description": "Analysis of small intestines of animals 3 hours after ingesting bovine lactoperoxidase (LPO). LPO is a component of milk and exhibits antiviral activities as well as immuno-modulatory effects. Results provide insight into the effect of LPO on the digestive tract.", "type": "Expression profiling by array", "pubmed_id": "17827675", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5562", "order": "none", "update_date": "Sep 19 2006", "subsets": [ { "dataset_id": "GDS2288", "description": "water", "sample_id": [ "GSM129231", "GSM129232", "GSM129233" ], "type": "agent", "id": "GDS2288_1" }, { "dataset_id": "GDS2288", "description": "bovine serum albumin", "sample_id": [ "GSM129228", "GSM129229", "GSM129230" ], "type": "agent", "id": "GDS2288_2" }, { "dataset_id": "GDS2288", "description": "lactoperoxidase", "sample_id": [ "GSM129234", "GSM129235", "GSM129236" ], "type": "agent", "id": "GDS2288_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2288", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2288.tab", "compression": "gz" } ], [ [ "GDS2289.tab" ], { "title": "PPARalpha overexpression effect on skeletal muscles", "description": "Analysis of skeletal muscles of transgenics (trs) overexpressing PPARalpha. Trs overexpressing PPARalpha develop glucose intolerance despite protection from diet-induced obesity. Results provide insight into the role of PPARalpha in the development of insulin-resistant diabetes.", "type": "Expression profiling by array", "pubmed_id": [ "16054054", "22135324" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5777", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2289", "description": "wild type", "sample_id": [ "GSM134973", "GSM134974" ], "type": "genotype/variation", "id": "GDS2289_1" }, { "dataset_id": "GDS2289", "description": "PPARa overexpressing", "sample_id": [ "GSM134975", "GSM134976" ], "type": "genotype/variation", "id": "GDS2289_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2289", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2289.tab", "compression": "gz" } ], [ [ "GDS2291.tab" ], { "title": "Lipin 1-beta overexpression effect on the liver", "description": "Analysis of livers of transgenics overexpressing lipin 1-beta, an alternative form of lipin 1 containing a 33 amino acid insertion. Mutations in the gene encoding lipin 1 cause hepatic steatosis in fld animals, a genetic model of lipodystrophy. Results provide insight into the function of lipin 1.", "type": "Expression profiling by array", "pubmed_id": "16950137", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5538", "order": "none", "update_date": "Mar 30 2007", "subsets": [ { "dataset_id": "GDS2291", "description": "control", "sample_id": [ "GSM127088", "GSM127091" ], "type": "genotype/variation", "id": "GDS2291_1" }, { "dataset_id": "GDS2291", "description": "lipin 1 overexpressing", "sample_id": [ "GSM127090", "GSM127092" ], "type": "genotype/variation", "id": "GDS2291_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2291", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2291.tab", "compression": "gz" } ], [ [ "GDS2292.tab" ], { "title": "Atherogenic diet effect on the liver: time course", "description": "Analysis of livers of animals fed an atherogenic diet with either a 14% or 60% fat content for 6 or 24 weeks. Results provide insight into the molecular basis of atherogenic diet-induced liver injury.", "type": "Expression profiling by array", "pubmed_id": "17929294", "platform": "GPL1292", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "29568", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log10 ratio", "reference_series": "GSE5852", "order": "none", "update_date": "Mar 30 2007", "subsets": [ { "dataset_id": "GDS2292", "description": "atherogenic diet with 14 percent fat", "sample_id": [ "GSM136678", "GSM136680" ], "type": "protocol", "id": "GDS2292_1" }, { "dataset_id": "GDS2292", "description": "atherogenic diet with 60 percent fat", "sample_id": [ "GSM136679", "GSM136681" ], "type": "protocol", "id": "GDS2292_2" }, { "dataset_id": "GDS2292", "description": "6 wk", "sample_id": [ "GSM136678", "GSM136679" ], "type": "time", "id": "GDS2292_3" }, { "dataset_id": "GDS2292", "description": "24 wk", "sample_id": [ "GSM136680", "GSM136681" ], "type": "time", "id": "GDS2292_4" } ], "taxid": "10090", "genes": 24485, "aggregation_function": "mean", "name": "GDS2292", "version": 1.0, "instances": "4", "variables": 24488, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2292.tab", "compression": "gz" } ], [ [ "GDS2294.tab" ], { "title": "Histone deacetylase 1 deficient embryonic stem cells", "description": "Analysis of embryonic stem cells lacking histone deacetylase 1 (HDAC1). HDACs catalyze the removal of acetyl groups from core histones resulting in chromatin compaction. Results provide insight into the role of HDAC1 in transcriptional regulation.", "type": "Expression profiling by array", "pubmed_id": "16940178", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5583", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2294", "description": "wild type", "sample_id": [ "GSM130365", "GSM130366", "GSM130367" ], "type": "genotype/variation", "id": "GDS2294_1" }, { "dataset_id": "GDS2294", "description": "HDAC1 knockout", "sample_id": [ "GSM130368", "GSM130369", "GSM130370" ], "type": "genotype/variation", "id": "GDS2294_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2294", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2294.tab", "compression": "gz" } ], [ [ "GDS2295.tab" ], { "title": "Aplidin and cytarabine effect on diffuse large B cell lymphoma cell line", "description": "Analysis of diffuse large B cell lymphoma SKI-DLCL cells treated with Aplidin, cytarabine (AraC), or both anticancer drugs. The effect of the drugs on animals with SKI-DLCL cell-derived tumors also examined. Results provide insight into the action of Aplidin alone and in combination with AraC.", "type": "Expression profiling by array", "pubmed_id": "17713546", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE5681", "order": "none", "update_date": "Sep 20 2006", "subsets": [ { "dataset_id": "GDS2295", "description": "in vitro", "sample_id": [ "GSM132917", "GSM132918", "GSM132920", "GSM132941", "GSM132944", "GSM132947", "GSM132949", "GSM132950", "GSM132953", "GSM132955", "GSM132956", "GSM132960" ], "type": "protocol", "id": "GDS2295_1" }, { "dataset_id": "GDS2295", "description": "in vivo", "sample_id": [ "GSM132760", "GSM132916" ], "type": "protocol", "id": "GDS2295_2" }, { "dataset_id": "GDS2295", "description": "untreated", "sample_id": [ "GSM132760", "GSM132917", "GSM132918", "GSM132920" ], "type": "agent", "id": "GDS2295_3" }, { "dataset_id": "GDS2295", "description": "Aplidin", "sample_id": [ "GSM132941", "GSM132944", "GSM132947" ], "type": "agent", "id": "GDS2295_4" }, { "dataset_id": "GDS2295", "description": "cytarabine", "sample_id": [ "GSM132949", "GSM132950", "GSM132953" ], "type": "agent", "id": "GDS2295_5" }, { "dataset_id": "GDS2295", "description": "Aplidin and cytarabine", "sample_id": [ "GSM132916", "GSM132955", "GSM132956", "GSM132960" ], "type": "agent", "id": "GDS2295_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2295", "version": 1.0, "instances": "14", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2295.tab", "compression": "gz" } ], [ [ "GDS2297.tab" ], { "title": "Gefitinib effect on various non-small cell lung cancer cell lines (HG-U133A)", "description": "Analysis of baseline non-small cell lung cancer (NSCLC) cell lines with a broad range of sensitivity to the anticancer drug gefitinib. Gefitinib is an epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor (TKI). Results used to define a gene expression signature of gefitinib sensitivity.", "type": "Expression profiling by array", "pubmed_id": "16877703", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE4342", "order": "none", "update_date": "Apr 12 2007", "subsets": [ { "dataset_id": "GDS2297", "description": "training set", "sample_id": [ "GSM98973", "GSM98974", "GSM98975", "GSM98976", "GSM98977", "GSM98978", "GSM98980", "GSM98983", "GSM98985", "GSM98986", "GSM98987" ], "type": "protocol", "id": "GDS2297_1" }, { "dataset_id": "GDS2297", "description": "test set", "sample_id": [ "GSM98979", "GSM98981", "GSM98982", "GSM98984", "GSM98988", "GSM98989", "GSM98990", "GSM98991", "GSM98992", "GSM98993", "GSM98994", "GSM98995", "GSM98996", "GSM98997", "GSM98998", "GSM98999", "GSM99000", "GSM99001", "GSM99002", "GSM99003", "GSM99004", "GSM99005", "GSM99006", "GSM99007", "GSM99008", "GSM99009", "GSM99010", "GSM99011", "GSM99012", "GSM99013", "GSM99014", "GSM99015", "GSM99016", "GSM99017" ], "type": "protocol", "id": "GDS2297_2" }, { "dataset_id": "GDS2297", "description": "IC50 at most 0.5 umol/L", "sample_id": [ "GSM99016", "GSM98984", "GSM98989", "GSM98985", "GSM98976", "GSM98978", "GSM99015", "GSM98974", "GSM98982", "GSM98983" ], "type": "other", "id": "GDS2297_3" }, { "dataset_id": "GDS2297", "description": "IC50 between 0.5 and 4.5 umol/L", "sample_id": [ "GSM98979", "GSM99000", "GSM99010", "GSM99017", "GSM98988", "GSM98994" ], "type": "other", "id": "GDS2297_4" }, { "dataset_id": "GDS2297", "description": "IC50 at least 4.5 umol/L", "sample_id": [ "GSM98975", "GSM99012", "GSM98980", "GSM98981", "GSM98997", "GSM99009", "GSM98973", "GSM98977", "GSM98993", "GSM98986", "GSM99005", "GSM98987", "GSM98990" ], "type": "other", "id": "GDS2297_5" }, { "dataset_id": "GDS2297", "description": "IC50 not given", "sample_id": [ "GSM98991", "GSM98992", "GSM98995", "GSM98996", "GSM98998", "GSM98999", "GSM99001", "GSM99002", "GSM99003", "GSM99006", "GSM99007", "GSM99008", "GSM99011", "GSM99013", "GSM99014", "GSM99004" ], "type": "other", "id": "GDS2297_6" }, { "dataset_id": "GDS2297", "description": "A549", "sample_id": [ "GSM98973" ], "type": "cell line", "id": "GDS2297_7" }, { "dataset_id": "GDS2297", "description": "Calu3", "sample_id": [ "GSM98974" ], "type": "cell line", "id": "GDS2297_8" }, { "dataset_id": "GDS2297", "description": "H125", "sample_id": [ "GSM98975" ], "type": "cell line", "id": "GDS2297_9" }, { "dataset_id": "GDS2297", "description": "H1299", "sample_id": [ "GSM98990" ], "type": "cell line", "id": "GDS2297_10" }, { "dataset_id": "GDS2297", "description": "H1334", "sample_id": [ "GSM98976" ], "type": "cell line", "id": "GDS2297_11" }, { "dataset_id": "GDS2297", "description": "H1395", "sample_id": [ "GSM98991" ], "type": "cell line", "id": "GDS2297_12" }, { "dataset_id": "GDS2297", "description": "H1437", "sample_id": [ "GSM98992" ], "type": "cell line", "id": "GDS2297_13" }, { "dataset_id": "GDS2297", "description": "H157", "sample_id": [ "GSM98977", "GSM98993" ], "type": "cell line", "id": "GDS2297_14" }, { "dataset_id": "GDS2297", "description": "H1648", "sample_id": [ "GSM98978", "GSM98994" ], "type": "cell line", "id": "GDS2297_15" }, { "dataset_id": "GDS2297", "description": "H1650", "sample_id": [ "GSM98979" ], "type": "cell line", "id": "GDS2297_16" }, { "dataset_id": "GDS2297", "description": "H1703", "sample_id": [ "GSM98980" ], "type": "cell line", "id": "GDS2297_17" }, { "dataset_id": "GDS2297", "description": "H1975", "sample_id": [ "GSM98981" ], "type": "cell line", "id": "GDS2297_18" }, { "dataset_id": "GDS2297", "description": "H1993", "sample_id": [ "GSM98996" ], "type": "cell line", "id": "GDS2297_19" }, { "dataset_id": "GDS2297", "description": "H2009", "sample_id": [ "GSM98997" ], "type": "cell line", "id": "GDS2297_20" }, { "dataset_id": "GDS2297", "description": "H2087", "sample_id": [ "GSM98998" ], "type": "cell line", "id": "GDS2297_21" }, { "dataset_id": "GDS2297", "description": "H2122", "sample_id": [ "GSM98999" ], "type": "cell line", "id": "GDS2297_22" }, { "dataset_id": "GDS2297", "description": "H2126", "sample_id": [ "GSM99000" ], "type": "cell line", "id": "GDS2297_23" }, { "dataset_id": "GDS2297", "description": "H2279", "sample_id": [ "GSM98982" ], "type": "cell line", "id": "GDS2297_24" }, { "dataset_id": "GDS2297", "description": "H2347", "sample_id": [ "GSM99001" ], "type": "cell line", "id": "GDS2297_25" }, { "dataset_id": "GDS2297", "description": "H2882", "sample_id": [ "GSM99002" ], "type": "cell line", "id": "GDS2297_26" }, { "dataset_id": "GDS2297", "description": "H2887", "sample_id": [ "GSM99003" ], "type": "cell line", "id": "GDS2297_27" }, { "dataset_id": "GDS2297", "description": "H322", "sample_id": [ "GSM98983" ], "type": "cell line", "id": "GDS2297_28" }, { "dataset_id": "GDS2297", "description": "H3255", "sample_id": [ "GSM98984" ], "type": "cell line", "id": "GDS2297_29" }, { "dataset_id": "GDS2297", "description": "H358", "sample_id": [ "GSM98985", "GSM99004" ], "type": "cell line", "id": "GDS2297_30" }, { "dataset_id": "GDS2297", "description": "H460", "sample_id": [ "GSM98986", "GSM99005" ], "type": "cell line", "id": "GDS2297_31" }, { "dataset_id": "GDS2297", "description": "H520", "sample_id": [ "GSM98987" ], "type": "cell line", "id": "GDS2297_32" }, { "dataset_id": "GDS2297", "description": "H820", "sample_id": [ "GSM98988" ], "type": "cell line", "id": "GDS2297_33" }, { "dataset_id": "GDS2297", "description": "HCC1171", "sample_id": [ "GSM99006" ], "type": "cell line", "id": "GDS2297_34" }, { "dataset_id": "GDS2297", "description": "HCC1195", "sample_id": [ "GSM99007" ], "type": "cell line", "id": "GDS2297_35" }, { "dataset_id": "GDS2297", "description": "HCC1359", "sample_id": [ "GSM99008" ], "type": "cell line", "id": "GDS2297_36" }, { "dataset_id": "GDS2297", "description": "HCC15", "sample_id": [ "GSM99009" ], "type": "cell line", "id": "GDS2297_37" }, { "dataset_id": "GDS2297", "description": "HCC193", "sample_id": [ "GSM99010" ], "type": "cell line", "id": "GDS2297_38" }, { "dataset_id": "GDS2297", "description": "HCC366", "sample_id": [ "GSM99011" ], "type": "cell line", "id": "GDS2297_39" }, { "dataset_id": "GDS2297", "description": "HCC4006", "sample_id": [ "GSM98989" ], "type": "cell line", "id": "GDS2297_40" }, { "dataset_id": "GDS2297", "description": "HCC44", "sample_id": [ "GSM99012" ], "type": "cell line", "id": "GDS2297_41" }, { "dataset_id": "GDS2297", "description": "HCC461", "sample_id": [ "GSM99013" ], "type": "cell line", "id": "GDS2297_42" }, { "dataset_id": "GDS2297", "description": "HCC515", "sample_id": [ "GSM99014" ], "type": "cell line", "id": "GDS2297_43" }, { "dataset_id": "GDS2297", "description": "HCC78", "sample_id": [ "GSM99015" ], "type": "cell line", "id": "GDS2297_44" }, { "dataset_id": "GDS2297", "description": "HCC827", "sample_id": [ "GSM99016" ], "type": "cell line", "id": "GDS2297_45" }, { "dataset_id": "GDS2297", "description": "HCC95", "sample_id": [ "GSM99017" ], "type": "cell line", "id": "GDS2297_46" }, { "dataset_id": "GDS2297", "description": "H1770", "sample_id": [ "GSM98995" ], "type": "cell line", "id": "GDS2297_47" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2297", "version": 1.0, "instances": "45", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2297.tab", "compression": "gz" } ], [ [ "GDS2298.tab" ], { "title": "Gefitinib effect on various non-small cell lung cancer cell lines (HG-U133B)", "description": "Analysis of baseline non-small cell lung cancer (NSCLC) cell lines with a broad range of sensitivity to the anticancer drug gefitinib. Gefitinib is an epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor (TKI). Results used to define a gene expression signature of gefitinib sensitivity.", "type": "Expression profiling by array", "pubmed_id": "16877703", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE4342", "order": "none", "update_date": "Apr 12 2007", "subsets": [ { "dataset_id": "GDS2298", "description": "training set", "sample_id": [ "GSM99019", "GSM99020", "GSM99021", "GSM99022", "GSM99023", "GSM99024", "GSM99026", "GSM99029", "GSM99030", "GSM99031", "GSM99032" ], "type": "protocol", "id": "GDS2298_1" }, { "dataset_id": "GDS2298", "description": "test set", "sample_id": [ "GSM99018", "GSM99025", "GSM99027", "GSM99028", "GSM99033", "GSM99034", "GSM99035" ], "type": "protocol", "id": "GDS2298_2" }, { "dataset_id": "GDS2298", "description": "IC50 at most 0.5 umol/L", "sample_id": [ "GSM99035", "GSM99018", "GSM99034", "GSM99030", "GSM99022", "GSM99024", "GSM99020", "GSM99028", "GSM99029" ], "type": "other", "id": "GDS2298_3" }, { "dataset_id": "GDS2298", "description": "IC50 between 0.5 and 4.5 umol/L", "sample_id": [ "GSM99025", "GSM99033" ], "type": "other", "id": "GDS2298_4" }, { "dataset_id": "GDS2298", "description": "IC50 at least 4.5 umol/L", "sample_id": [ "GSM99021", "GSM99026", "GSM99027", "GSM99019", "GSM99023", "GSM99031", "GSM99032" ], "type": "other", "id": "GDS2298_5" }, { "dataset_id": "GDS2298", "description": "HCC827", "sample_id": [ "GSM99035" ], "type": "cell line", "id": "GDS2298_6" }, { "dataset_id": "GDS2298", "description": "A549", "sample_id": [ "GSM99019" ], "type": "cell line", "id": "GDS2298_7" }, { "dataset_id": "GDS2298", "description": "Calu3", "sample_id": [ "GSM99020" ], "type": "cell line", "id": "GDS2298_8" }, { "dataset_id": "GDS2298", "description": "H125", "sample_id": [ "GSM99021" ], "type": "cell line", "id": "GDS2298_9" }, { "dataset_id": "GDS2298", "description": "H1334", "sample_id": [ "GSM99022" ], "type": "cell line", "id": "GDS2298_10" }, { "dataset_id": "GDS2298", "description": "H157", "sample_id": [ "GSM99023" ], "type": "cell line", "id": "GDS2298_11" }, { "dataset_id": "GDS2298", "description": "H1648", "sample_id": [ "GSM99024" ], "type": "cell line", "id": "GDS2298_12" }, { "dataset_id": "GDS2298", "description": "H1650", "sample_id": [ "GSM99025" ], "type": "cell line", "id": "GDS2298_13" }, { "dataset_id": "GDS2298", "description": "H1703", "sample_id": [ "GSM99026" ], "type": "cell line", "id": "GDS2298_14" }, { "dataset_id": "GDS2298", "description": "H1975", "sample_id": [ "GSM99027" ], "type": "cell line", "id": "GDS2298_15" }, { "dataset_id": "GDS2298", "description": "H2279", "sample_id": [ "GSM99028" ], "type": "cell line", "id": "GDS2298_16" }, { "dataset_id": "GDS2298", "description": "H322", "sample_id": [ "GSM99029" ], "type": "cell line", "id": "GDS2298_17" }, { "dataset_id": "GDS2298", "description": "H3255", "sample_id": [ "GSM99018" ], "type": "cell line", "id": "GDS2298_18" }, { "dataset_id": "GDS2298", "description": "H358", "sample_id": [ "GSM99030" ], "type": "cell line", "id": "GDS2298_19" }, { "dataset_id": "GDS2298", "description": "H460", "sample_id": [ "GSM99031" ], "type": "cell line", "id": "GDS2298_20" }, { "dataset_id": "GDS2298", "description": "H520", "sample_id": [ "GSM99032" ], "type": "cell line", "id": "GDS2298_21" }, { "dataset_id": "GDS2298", "description": "H820", "sample_id": [ "GSM99033" ], "type": "cell line", "id": "GDS2298_22" }, { "dataset_id": "GDS2298", "description": "HCC4006", "sample_id": [ "GSM99034" ], "type": "cell line", "id": "GDS2298_23" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2298", "version": 1.0, "instances": "18", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2298.tab", "compression": "gz" } ], [ [ "GDS23.tab" ], { "title": "Homeobox otd/Otx2 transcription factor action", "description": "Analysis of the effects of overexpression of orthodenticle homeobox genes otd (Drosophila) and Otx2 (human) reveals evolutionary conservation. The otd/Otx2 homeobox genes play a role in embryogenesis of the head and brain.", "type": "Expression profiling by array", "pubmed_id": "11983056", "platform": "GPL70", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14090", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE32", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS23", "description": "otd overexpressing mutant", "sample_id": [ "GSM1351", "GSM1352", "GSM1353", "GSM1354" ], "type": "strain", "id": "GDS23_1" }, { "dataset_id": "GDS23", "description": "OTX2 overexpressing mutant", "sample_id": [ "GSM1355", "GSM1356", "GSM1357", "GSM1358" ], "type": "strain", "id": "GDS23_2" }, { "dataset_id": "GDS23", "description": "wildtype", "sample_id": [ "GSM1359", "GSM1360", "GSM1361", "GSM1362", "GSM1363", "GSM1364", "GSM1365", "GSM1366" ], "type": "strain", "id": "GDS23_3" }, { "dataset_id": "GDS23", "description": "control", "sample_id": [ "GSM1359", "GSM1360", "GSM1361", "GSM1362", "GSM1363" ], "type": "shock", "id": "GDS23_4" }, { "dataset_id": "GDS23", "description": "heat shock", "sample_id": [ "GSM1351", "GSM1352", "GSM1353", "GSM1354", "GSM1355", "GSM1356", "GSM1357", "GSM1358", "GSM1364", "GSM1365", "GSM1366" ], "type": "shock", "id": "GDS23_5" } ], "taxid": "7227", "genes": 12587, "aggregation_function": "mean", "name": "GDS23", "version": 1.0, "instances": "16", "variables": 12590, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS23.tab", "compression": "gz" } ], [ [ "GDS2300.tab" ], { "title": "Germinal vesicle stage and metaphase II stage oocyte comparison", "description": "Comparison of oocytes at the germinal vesicle stage (GV) to those at the metaphase II (MII) stage. GV-stage oocytes are transcriptionally silent. Results show that the destruction of transcripts that occurs during oocyte maturation is selective.", "type": "Expression profiling by array", "pubmed_id": "17022963", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5668", "order": "ordered", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2300", "description": "immature GV", "sample_id": [ "GSM132592", "GSM132657", "GSM132658" ], "type": "development stage", "id": "GDS2300_1" }, { "dataset_id": "GDS2300", "description": "mature MII", "sample_id": [ "GSM132659", "GSM132660", "GSM132661" ], "type": "development stage", "id": "GDS2300_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2300", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2300.tab", "compression": "gz" } ], [ [ "GDS2301.tab" ], { "title": "Noggin and Dkk-1 ectopic expression effect on ventral mesoderm during gastrulation", "description": "Analysis of stage 10 early and stage 11.5 late gastrula embryos ectopically expressing Noggin, Dkk-1, or both to induce different aspects of organizer activity. The organizer patterns vertebrate embryos during gastrulation. Results provide insight into organizer function during gastrulation.", "type": "Expression profiling by array", "pubmed_id": "16756679", "platform": "GPL1318", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15611", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3368", "order": "none", "update_date": "Oct 31 2006", "subsets": [ { "dataset_id": "GDS2301", "description": "stage 10 (early gastrula)", "sample_id": [ "GSM74500", "GSM76159", "GSM76160", "GSM76161", "GSM76162", "GSM76164", "GSM76170", "GSM76172", "GSM76174", "GSM76176" ], "type": "development stage", "id": "GDS2301_1" }, { "dataset_id": "GDS2301", "description": "stage 11.5 (late gastrula)", "sample_id": [ "GSM76180", "GSM76182", "GSM76184", "GSM76187", "GSM76188", "GSM76189", "GSM76190", "GSM76191", "GSM76192", "GSM76193" ], "type": "development stage", "id": "GDS2301_2" }, { "dataset_id": "GDS2301", "description": "Noggin", "sample_id": [ "GSM74500", "GSM76164", "GSM76180", "GSM76189" ], "type": "agent", "id": "GDS2301_3" }, { "dataset_id": "GDS2301", "description": "Noggin, Dkk-1", "sample_id": [ "GSM76159", "GSM76170", "GSM76182", "GSM76190" ], "type": "agent", "id": "GDS2301_4" }, { "dataset_id": "GDS2301", "description": "Dkk-1", "sample_id": [ "GSM76160", "GSM76172", "GSM76184", "GSM76191" ], "type": "agent", "id": "GDS2301_5" }, { "dataset_id": "GDS2301", "description": "control", "sample_id": [ "GSM76161", "GSM76162", "GSM76174", "GSM76176", "GSM76187", "GSM76188", "GSM76192", "GSM76193" ], "type": "agent", "id": "GDS2301_6" }, { "dataset_id": "GDS2301", "description": "dorsal", "sample_id": [ "GSM76161", "GSM76174", "GSM76187", "GSM76192" ], "type": "tissue", "id": "GDS2301_7" }, { "dataset_id": "GDS2301", "description": "ventral", "sample_id": [ "GSM74500", "GSM76159", "GSM76160", "GSM76162", "GSM76164", "GSM76170", "GSM76172", "GSM76176", "GSM76180", "GSM76182", "GSM76184", "GSM76188", "GSM76189", "GSM76190", "GSM76191", "GSM76193" ], "type": "tissue", "id": "GDS2301_8" }, { "dataset_id": "GDS2301", "description": "clutch 1", "sample_id": [ "GSM74500", "GSM76159", "GSM76160", "GSM76161", "GSM76162" ], "type": "other", "id": "GDS2301_9" }, { "dataset_id": "GDS2301", "description": "clutch 2", "sample_id": [ "GSM76164", "GSM76170", "GSM76172", "GSM76174", "GSM76176" ], "type": "other", "id": "GDS2301_10" }, { "dataset_id": "GDS2301", "description": "clutch 3", "sample_id": [ "GSM76180", "GSM76182", "GSM76184", "GSM76187", "GSM76188" ], "type": "other", "id": "GDS2301_11" }, { "dataset_id": "GDS2301", "description": "clutch 4", "sample_id": [ "GSM76189", "GSM76190", "GSM76191", "GSM76192", "GSM76193" ], "type": "other", "id": "GDS2301_12" } ], "taxid": "8355", "genes": 13132, "aggregation_function": "mean", "name": "GDS2301", "version": 1.0, "instances": "20", "variables": 13137, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2301.tab", "compression": "gz" } ], [ [ "GDS2303.tab" ], { "title": "ATP binding cassette transporter A1 overexpression effect on LDL receptor-deficient livers", "description": "Analysis of livers of LDL receptor (LDLr) knockout (KO) mutants overexpressing ATP binding cassette transporter A1 (ABCA1), responsible for cellular lipid efflux. LDLr KO is a model of hypercholesterolemia. Results provide insight into the role of ABCA1 in cholesterol metabolism and atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "16928680", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5496", "order": "none", "update_date": "Mar 27 2007", "subsets": [ { "dataset_id": "GDS2303", "description": "control", "sample_id": [ "GSM126578", "GSM126579", "GSM126580", "GSM126584" ], "type": "protocol", "id": "GDS2303_1" }, { "dataset_id": "GDS2303", "description": "ABCA1 overexpression", "sample_id": [ "GSM126581", "GSM126582", "GSM126583", "GSM126585" ], "type": "protocol", "id": "GDS2303_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2303", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2303.tab", "compression": "gz" } ], [ [ "GDS2304.tab" ], { "title": "Akt1 serine-threonine protein kinase activation effect on the heart (MG-430A)", "description": "Analysis of hearts after acute or chronic induction of a transgenic Akt1 kinase. Acute activation results in reversible hypertrophy, while chronic activation induces transition to failure. Results provide insight into the mechanisms involved in the development of cardiac hypertrophy and failure.", "type": "Expression profiling by array", "pubmed_id": "16882883", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3383", "order": "none", "update_date": "Oct 20 2006", "subsets": [ { "dataset_id": "GDS2304", "description": "pre-induction", "sample_id": [ "GSM76311", "GSM76312", "GSM76313", "GSM76314" ], "type": "protocol", "id": "GDS2304_1" }, { "dataset_id": "GDS2304", "description": "2 wk induction", "sample_id": [ "GSM76315", "GSM76316", "GSM76317", "GSM76318" ], "type": "protocol", "id": "GDS2304_2" }, { "dataset_id": "GDS2304", "description": "2 wk induction, 2 d repression", "sample_id": [ "GSM76319", "GSM76320", "GSM76321", "GSM76322" ], "type": "protocol", "id": "GDS2304_3" }, { "dataset_id": "GDS2304", "description": "6 wk induction", "sample_id": [ "GSM76323", "GSM76324", "GSM76325" ], "type": "protocol", "id": "GDS2304_4" }, { "dataset_id": "GDS2304", "description": "6 wk induction, 2 wk repression", "sample_id": [ "GSM76326", "GSM76327", "GSM76328" ], "type": "protocol", "id": "GDS2304_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2304", "version": 1.0, "instances": "18", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2304.tab", "compression": "gz" } ], [ [ "GDS2307.tab" ], { "title": "Oxidatively modified LDL effect on retinal pigment epithelial cell line", "description": "Analysis of retinal pigment epithelial ARPE-19 cells following treatment with LDL or oxidatively modified LDL (ox-LDL) for 48 hours. Results provide insight into the role of ox-LDLs in the development of age-related macular degeneration.", "type": "Expression profiling by array", "pubmed_id": "18182060", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5741", "order": "none", "update_date": "Sep 21 2006", "subsets": [ { "dataset_id": "GDS2307", "description": "untreated", "sample_id": [ "GSM133871", "GSM133872", "GSM133873" ], "type": "agent", "id": "GDS2307_1" }, { "dataset_id": "GDS2307", "description": "LDL", "sample_id": [ "GSM133874", "GSM133875", "GSM133876" ], "type": "agent", "id": "GDS2307_2" }, { "dataset_id": "GDS2307", "description": "ox-LDL", "sample_id": [ "GSM133877", "GSM133878", "GSM133879" ], "type": "agent", "id": "GDS2307_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2307", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2307.tab", "compression": "gz" } ], [ [ "GDS2308.tab" ], { "title": "Akt1 serine-threonine protein kinase activation effect on the heart (MG-430B)", "description": "Analysis of hearts after acute or chronic induction of a transgenic Akt1 kinase. Acute activation results in reversible hypertrophy, while chronic activation induces transition to failure. Results provide insight into the mechanisms involved in the development of cardiac hypertrophy and failure.", "type": "Expression profiling by array", "pubmed_id": "16882883", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3383", "order": "none", "update_date": "Oct 20 2006", "subsets": [ { "dataset_id": "GDS2308", "description": "pre-induction", "sample_id": [ "GSM76329", "GSM76330", "GSM76331", "GSM76332" ], "type": "protocol", "id": "GDS2308_1" }, { "dataset_id": "GDS2308", "description": "2 wk induction", "sample_id": [ "GSM76333", "GSM76334", "GSM76335", "GSM76336" ], "type": "protocol", "id": "GDS2308_2" }, { "dataset_id": "GDS2308", "description": "2 wk induction, 2 d repression", "sample_id": [ "GSM76337", "GSM76338", "GSM76339", "GSM76340" ], "type": "protocol", "id": "GDS2308_3" }, { "dataset_id": "GDS2308", "description": "6 wk induction", "sample_id": [ "GSM76341", "GSM76342", "GSM76343" ], "type": "protocol", "id": "GDS2308_4" }, { "dataset_id": "GDS2308", "description": "6 wk induction, 2 wk repression", "sample_id": [ "GSM76344", "GSM76345", "GSM76346" ], "type": "protocol", "id": "GDS2308_5" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2308", "version": 1.0, "instances": "18", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2308.tab", "compression": "gz" } ], [ [ "GDS2309.tab" ], { "title": "Beta-4 nicotinic acetylcholine receptor subunit deficiency effect on the brain", "description": "Analysis of brains of beta-4 nicotinic acetylcholine receptor (nAChR) subunit null mutants. nAChRs are pentameric ion channels. Results provide insight into the molecular basis of the beta-4 subunit's role in the bradycardic response to vagal stimulation, nicotine-induced seizure, and anxiety.", "type": "Expression profiling by array", "pubmed_id": "16985005", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE5320", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2309", "description": "wild-type", "sample_id": [ "GSM120574", "GSM120575", "GSM120576", "GSM120577", "GSM120578", "GSM120579" ], "type": "genotype/variation", "id": "GDS2309_1" }, { "dataset_id": "GDS2309", "description": "beta-4 nAChR deficient", "sample_id": [ "GSM120580", "GSM120581", "GSM120582", "GSM120583", "GSM120584" ], "type": "genotype/variation", "id": "GDS2309_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2309", "version": 1.0, "instances": "11", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2309.tab", "compression": "gz" } ], [ [ "GDS2310.tab" ], { "title": "Exercise effect on white blood cells", "description": "Analysis of white blood cells (WBCs) from 5 males following exhaustive or moderate exercise. Results provide insight into the effects of exercise at the molecular level and the feasibility of using gene expression profiles of WBCs to monitor exercise and training load.", "type": "Expression profiling by array", "pubmed_id": "16990507", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE3606", "order": "none", "update_date": "Sep 22 2006", "subsets": [ { "dataset_id": "GDS2310", "description": "before exhaustive exercise", "sample_id": [ "GSM82670", "GSM82674", "GSM82675", "GSM82682", "GSM82685" ], "type": "time", "id": "GDS2310_1" }, { "dataset_id": "GDS2310", "description": "after exhaustive exercise", "sample_id": [ "GSM82671", "GSM82676", "GSM82680", "GSM82686", "GSM82689" ], "type": "time", "id": "GDS2310_2" }, { "dataset_id": "GDS2310", "description": "before moderate exercise", "sample_id": [ "GSM82672", "GSM82677", "GSM82679", "GSM82683", "GSM82687" ], "type": "time", "id": "GDS2310_3" }, { "dataset_id": "GDS2310", "description": "after moderate exercise", "sample_id": [ "GSM82673", "GSM82678", "GSM82681", "GSM82684", "GSM82688" ], "type": "time", "id": "GDS2310_4" }, { "dataset_id": "GDS2310", "description": "proband a", "sample_id": [ "GSM82674", "GSM82679", "GSM82680", "GSM82681" ], "type": "individual", "id": "GDS2310_5" }, { "dataset_id": "GDS2310", "description": "proband f", "sample_id": [ "GSM82670", "GSM82671", "GSM82672", "GSM82673" ], "type": "individual", "id": "GDS2310_6" }, { "dataset_id": "GDS2310", "description": "proband g", "sample_id": [ "GSM82675", "GSM82676", "GSM82677", "GSM82678" ], "type": "individual", "id": "GDS2310_7" }, { "dataset_id": "GDS2310", "description": "proband i", "sample_id": [ "GSM82682", "GSM82683", "GSM82684", "GSM82689" ], "type": "individual", "id": "GDS2310_8" }, { "dataset_id": "GDS2310", "description": "proband k", "sample_id": [ "GSM82685", "GSM82686", "GSM82687", "GSM82688" ], "type": "individual", "id": "GDS2310_9" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2310", "version": 1.0, "instances": "20", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2310.tab", "compression": "gz" } ], [ [ "GDS2311.tab" ], { "title": "Estradiol effect on the ischemic brain", "description": "Analysis of ischemic cerebral cortices of ovariectomized animals on a regimen of 1 subcutaneous 17beta-estradiol pellet for 1 week. Ischemia was induced by middle cerebral artery occlusion. Results provide insight into the basis of estrogen's protective effect in experimental cerebral ischemia.", "type": "Expression profiling by array", "pubmed_id": "16971488", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5315", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2311", "description": "control", "sample_id": [ "GSM120463", "GSM120464" ], "type": "agent", "id": "GDS2311_1" }, { "dataset_id": "GDS2311", "description": "17beta-estradiol", "sample_id": [ "GSM120461", "GSM120462" ], "type": "agent", "id": "GDS2311_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2311", "version": 1.0, "instances": "4", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2311.tab", "compression": "gz" } ], [ [ "GDS2312.tab" ], { "title": "Nemaline myopathy model: various skeletal muscles", "description": "Analysis of various skeletal muscles of trangenics expressing the human Met9Arg alpha-tropomyosin slow mutant gene, a model of nemaline myopathy (NM). NM, a non-dystrophic congenital myopathy, is a variably severe neuromuscular disorder. Results provide insight into the pathogenesis of NM.", "type": "Expression profiling by array", "pubmed_id": "16877500", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE3384", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2312", "description": "normal", "sample_id": [ "GSM76347", "GSM76348", "GSM76349", "GSM76350", "GSM76355", "GSM76356", "GSM76357", "GSM76361", "GSM76362", "GSM76363", "GSM76364", "GSM76369", "GSM76370", "GSM76371", "GSM76375", "GSM76376", "GSM76377", "GSM76378" ], "type": "disease state", "id": "GDS2312_1" }, { "dataset_id": "GDS2312", "description": "nemaline myopathy", "sample_id": [ "GSM76351", "GSM76352", "GSM76353", "GSM76354", "GSM76358", "GSM76359", "GSM76360", "GSM76365", "GSM76366", "GSM76367", "GSM76368", "GSM76372", "GSM76373", "GSM76374", "GSM76379", "GSM76380", "GSM76381", "GSM76382" ], "type": "disease state", "id": "GDS2312_2" }, { "dataset_id": "GDS2312", "description": "tibialis anterior", "sample_id": [ "GSM76375", "GSM76376", "GSM76377", "GSM76378", "GSM76379", "GSM76380", "GSM76381", "GSM76382" ], "type": "tissue", "id": "GDS2312_3" }, { "dataset_id": "GDS2312", "description": "gastrocnemius", "sample_id": [ "GSM76361", "GSM76362", "GSM76363", "GSM76364", "GSM76365", "GSM76366", "GSM76367", "GSM76368" ], "type": "tissue", "id": "GDS2312_4" }, { "dataset_id": "GDS2312", "description": "plantaris", "sample_id": [ "GSM76369", "GSM76370", "GSM76371", "GSM76372", "GSM76373", "GSM76374" ], "type": "tissue", "id": "GDS2312_5" }, { "dataset_id": "GDS2312", "description": "diaphragm", "sample_id": [ "GSM76347", "GSM76348", "GSM76349", "GSM76350", "GSM76351", "GSM76352", "GSM76353", "GSM76354" ], "type": "tissue", "id": "GDS2312_6" }, { "dataset_id": "GDS2312", "description": "extensor digitorum longus", "sample_id": [ "GSM76355", "GSM76356", "GSM76357", "GSM76358", "GSM76359", "GSM76360" ], "type": "tissue", "id": "GDS2312_7" }, { "dataset_id": "GDS2312", "description": "7 m", "sample_id": [ "GSM76347", "GSM76348", "GSM76351", "GSM76352", "GSM76355", "GSM76356", "GSM76358", "GSM76359", "GSM76361", "GSM76362", "GSM76365", "GSM76366", "GSM76369", "GSM76370", "GSM76372", "GSM76373", "GSM76375", "GSM76376", "GSM76379", "GSM76380" ], "type": "age", "id": "GDS2312_8" }, { "dataset_id": "GDS2312", "description": "10 m", "sample_id": [ "GSM76349", "GSM76350", "GSM76353", "GSM76354", "GSM76357", "GSM76360", "GSM76363", "GSM76364", "GSM76367", "GSM76368", "GSM76371", "GSM76374", "GSM76377", "GSM76378", "GSM76381", "GSM76382" ], "type": "age", "id": "GDS2312_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2312", "version": 1.0, "instances": "36", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2312.tab", "compression": "gz" } ], [ [ "GDS2314.tab" ], { "title": "Antenatal steroid effect on the placenta", "description": "Analysis of placentas of C57BL animals following antenatal steroid (AS) treatment using dexamethasone. AS therapy is used to promote fetal lung maturation. Results provide insight into the risks associated with AS therapy.", "type": "Expression profiling by array", "pubmed_id": "17559929", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4165", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2314", "description": "control", "sample_id": [ "GSM95113", "GSM95235", "GSM95238" ], "type": "agent", "id": "GDS2314_1" }, { "dataset_id": "GDS2314", "description": "dexamethasone", "sample_id": [ "GSM95240", "GSM95241", "GSM95243" ], "type": "agent", "id": "GDS2314_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2314", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2314.tab", "compression": "gz" } ], [ [ "GDS2316.tab" ], { "title": "Gata4 heterozygous mutant heart response to pressure overload", "description": "Analysis of pressure-overloaded (PO) heart ventricles of animals heterozygous for the second exon deletion of Gata4, a transcription factor. PO induced by transverse aortic constriction. Results provide insight into the role of Gata4 in the regulation of pathways necessary for cardiac hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "16983087", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE5500", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2316", "description": "wild type", "sample_id": [ "GSM126895", "GSM126898", "GSM126901", "GSM126902", "GSM126903", "GSM126904", "GSM126905", "GSM126906", "GSM126907", "GSM126908" ], "type": "strain", "id": "GDS2316_1" }, { "dataset_id": "GDS2316", "description": "Gata4 heterozygous mutant", "sample_id": [ "GSM126909", "GSM126910", "GSM126911", "GSM126912", "GSM126913", "GSM126914", "GSM126915", "GSM126916", "GSM126917", "GSM126918", "GSM126919" ], "type": "strain", "id": "GDS2316_2" }, { "dataset_id": "GDS2316", "description": "control", "sample_id": [ "GSM126895", "GSM126898", "GSM126901", "GSM126902", "GSM126909", "GSM126910", "GSM126911", "GSM126912", "GSM126913" ], "type": "stress", "id": "GDS2316_3" }, { "dataset_id": "GDS2316", "description": "pressure overload", "sample_id": [ "GSM126903", "GSM126904", "GSM126905", "GSM126906", "GSM126907", "GSM126908", "GSM126914", "GSM126915", "GSM126916", "GSM126917", "GSM126918", "GSM126919" ], "type": "stress", "id": "GDS2316_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2316", "version": 1.0, "instances": "21", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2316.tab", "compression": "gz" } ], [ [ "GDS2318.tab" ], { "title": "yox1 yhp1 double mutant across two cell cycles", "description": "Analysis of yox1 yhp double mutants across two cell cycles, a length of 2 hours after synchronization with alpha factor. Results compared to those from an experiment using wild type cells (GDS2347) and provide insight into the role of Yox1 and Yhp1 in early cell cycle box-dependent transcription.", "type": "Expression profiling by array", "pubmed_id": "12464633", "platform": "GPL1914", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6336", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "13", "value_type": "log10 ratio", "reference_series": "GSE5283", "order": "ordered", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2318", "description": "0 m", "sample_id": [ "GSM118463" ], "type": "time", "id": "GDS2318_1" }, { "dataset_id": "GDS2318", "description": "10 m", "sample_id": [ "GSM118464" ], "type": "time", "id": "GDS2318_2" }, { "dataset_id": "GDS2318", "description": "20 m", "sample_id": [ "GSM118465" ], "type": "time", "id": "GDS2318_3" }, { "dataset_id": "GDS2318", "description": "30 m", "sample_id": [ "GSM118466" ], "type": "time", "id": "GDS2318_4" }, { "dataset_id": "GDS2318", "description": "40 m", "sample_id": [ "GSM118467" ], "type": "time", "id": "GDS2318_5" }, { "dataset_id": "GDS2318", "description": "50 m", "sample_id": [ "GSM118468" ], "type": "time", "id": "GDS2318_6" }, { "dataset_id": "GDS2318", "description": "60 m", "sample_id": [ "GSM118469" ], "type": "time", "id": "GDS2318_7" }, { "dataset_id": "GDS2318", "description": "70 m", "sample_id": [ "GSM118470" ], "type": "time", "id": "GDS2318_8" }, { "dataset_id": "GDS2318", "description": "80 m", "sample_id": [ "GSM118471" ], "type": "time", "id": "GDS2318_9" }, { "dataset_id": "GDS2318", "description": "90 m", "sample_id": [ "GSM118472" ], "type": "time", "id": "GDS2318_10" }, { "dataset_id": "GDS2318", "description": "100 m", "sample_id": [ "GSM118473" ], "type": "time", "id": "GDS2318_11" }, { "dataset_id": "GDS2318", "description": "110 m", "sample_id": [ "GSM118474" ], "type": "time", "id": "GDS2318_12" }, { "dataset_id": "GDS2318", "description": "120 m", "sample_id": [ "GSM118475" ], "type": "time", "id": "GDS2318_13" } ], "taxid": "4932", "genes": 6264, "aggregation_function": "mean", "name": "GDS2318", "version": 1.0, "instances": "13", "variables": 6266, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2318.tab", "compression": "gz" } ], [ [ "GDS2319.tab" ], { "title": "High and low weight gainers: adipose tissue", "description": "Analysis of inguinal adipose tissue from genetically identical inbred C57BL/6J males exhibiting high or low weight gain after 4 weeks on a high saturated fat diet. Results provide insight into the role of epigenetic mechanisms in the susceptibility to obesity.", "type": "Expression profiling by array", "pubmed_id": "16733553", "platform": "GPL2995", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33012", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4692", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2319", "description": "low weight gainer", "sample_id": [ "GSM105992", "GSM105993", "GSM105994" ], "type": "disease state", "id": "GDS2319_1" }, { "dataset_id": "GDS2319", "description": "high weight gainer", "sample_id": [ "GSM105989", "GSM105990", "GSM105991" ], "type": "disease state", "id": "GDS2319_2" } ], "taxid": "10090", "genes": 32220, "aggregation_function": "mean", "name": "GDS2319", "version": 1.0, "instances": "6", "variables": 32222, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2319.tab", "compression": "gz" } ], [ [ "GDS232.tab" ], { "title": "Medulloblastoma metastasis", "description": "Identification of genes causing medulloblastoma tumors to metastasize. Analyzed 23 primary medulloblastomas clinically designated as either metastatic or non-metastatic.", "type": "Expression profiling by array", "pubmed_id": "11544480", "platform": "GPL74", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "2059", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE468", "order": "none", "update_date": "Jul 21 2006", "subsets": [ { "dataset_id": "GDS232", "description": "metastatic", "sample_id": [ "GSM4312", "GSM4313", "GSM4314", "GSM4315", "GSM4316", "GSM4317", "GSM4318", "GSM4319", "GSM4320", "GSM4321" ], "type": "disease state", "id": "GDS232_1" }, { "dataset_id": "GDS232", "description": "non-metastatic", "sample_id": [ "GSM4322", "GSM4323", "GSM4324", "GSM4325", "GSM4326", "GSM4327", "GSM4328", "GSM4329", "GSM4330", "GSM4331", "GSM4332", "GSM4333", "GSM4334" ], "type": "disease state", "id": "GDS232_2" } ], "taxid": "9606", "genes": 1537, "aggregation_function": "mean", "name": "GDS232", "version": 1.0, "instances": "23", "variables": 1539, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS232.tab", "compression": "gz" } ], [ [ "GDS2320.tab" ], { "title": "High and low weight gainers: hypothalamus", "description": "Analysis of hypothalami from genetically identical inbred C57BL/6J males exhibiting high or low weight gain after several weeks on a high saturated fat diet. Results provide insight into the role of epigenetic mechanisms in the susceptibility to obesity.", "type": "Expression profiling by array", "pubmed_id": "16733553", "platform": "GPL2995", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33012", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4697", "order": "none", "update_date": "Sep 25 2006", "subsets": [ { "dataset_id": "GDS2320", "description": "low weight gainer", "sample_id": [ "GSM106163", "GSM106164", "GSM106165", "GSM106166" ], "type": "disease state", "id": "GDS2320_1" }, { "dataset_id": "GDS2320", "description": "high weight gainer", "sample_id": [ "GSM106159", "GSM106160", "GSM106161", "GSM106162" ], "type": "disease state", "id": "GDS2320_2" } ], "taxid": "10090", "genes": 32220, "aggregation_function": "mean", "name": "GDS2320", "version": 1.0, "instances": "8", "variables": 32222, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2320.tab", "compression": "gz" } ], [ [ "GDS2321.tab" ], { "title": "Polyethylene glycol-conjugated G-CSF mobilized CD34+ cells", "description": "Analysis of granulocyte colony stimulating factor (G-CSF) or polyethylene glycol-conjugated (pegylated) G-CSF mobilized CD34+ hematopoietic stem and progenitor cells from multiple myeloma patients undergoing chemotherapy. Pegylated G-CSF has a longer half-life than unconjugated G-CSF.", "type": "Expression profiling by array", "pubmed_id": "18268278", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE4688", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2321", "description": "G-CSF", "sample_id": [ "GSM105891", "GSM105892", "GSM105893", "GSM105894", "GSM105895", "GSM105896", "GSM105897" ], "type": "agent", "id": "GDS2321_1" }, { "dataset_id": "GDS2321", "description": "pegylated G-CSF", "sample_id": [ "GSM105882", "GSM105883", "GSM105884", "GSM105885", "GSM105886", "GSM105887", "GSM105888", "GSM105889", "GSM105890" ], "type": "agent", "id": "GDS2321_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2321", "version": 1.0, "instances": "16", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2321.tab", "compression": "gz" } ], [ [ "GDS2322.tab" ], { "title": "Vascular endothelial cell differentiation in vitro", "description": "Analysis of VEGF receptor Flk1-expressing cells isolated from embryoid bodies up to 8 days post-differentiation. Flk1-expressing cells have developmental potential uniquely restricted to hematopoietic and endothelial lineages. Results provide insight into early vascular development.", "type": "Expression profiling by array", "pubmed_id": "16601226", "platform": "GPL922", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log2 ratio", "reference_series": "GSE3757", "order": "none", "update_date": "Oct 20 2006", "subsets": [ { "dataset_id": "GDS2322", "description": "flk1-positive", "sample_id": [ "GSM86354", "GSM86355", "GSM86356", "GSM86357", "GSM86362", "GSM86363", "GSM86364", "GSM86365", "GSM86370", "GSM86371", "GSM86372", "GSM86373" ], "type": "genotype/variation", "id": "GDS2322_1" }, { "dataset_id": "GDS2322", "description": "flk1-negative", "sample_id": [ "GSM86358", "GSM86359", "GSM86360", "GSM86361", "GSM86366", "GSM86367", "GSM86368", "GSM86369", "GSM86374", "GSM86375", "GSM86376", "GSM86377" ], "type": "genotype/variation", "id": "GDS2322_2" }, { "dataset_id": "GDS2322", "description": "84 hours", "sample_id": [ "GSM86370", "GSM86371", "GSM86372", "GSM86373", "GSM86374", "GSM86375", "GSM86376", "GSM86377" ], "type": "time", "id": "GDS2322_3" }, { "dataset_id": "GDS2322", "description": "95 hours", "sample_id": [ "GSM86362", "GSM86363", "GSM86364", "GSM86365", "GSM86366", "GSM86367", "GSM86368", "GSM86369" ], "type": "time", "id": "GDS2322_4" }, { "dataset_id": "GDS2322", "description": "8 days", "sample_id": [ "GSM86354", "GSM86355", "GSM86356", "GSM86357", "GSM86358", "GSM86359", "GSM86360", "GSM86361" ], "type": "time", "id": "GDS2322_5" } ], "taxid": "10090", "genes": 17212, "aggregation_function": "mean", "name": "GDS2322", "version": 1.0, "instances": "24", "variables": 17215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2322.tab", "compression": "gz" } ], [ [ "GDS2323.tab" ], { "title": "Estrogen-starved breast cancer cell line: time course", "description": "Analysis of breast cancer MCF7/BUS cells starved of estrogen for up to 2 days. Results compared to that from an experiment (GDS2324) examining the response to low concentrations of 17beta-estradiol (E2). Results provide insight into the E2 sensitivity of E2 inducible or suppressible genes.", "type": "Expression profiling by array", "pubmed_id": "14610279", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4668", "order": "ordered", "update_date": "Sep 25 2006", "subsets": [ { "dataset_id": "GDS2323", "description": "0 d", "sample_id": [ "GSM105317", "GSM105318", "GSM105319" ], "type": "time", "id": "GDS2323_1" }, { "dataset_id": "GDS2323", "description": "1 d", "sample_id": [ "GSM105320", "GSM105321", "GSM105322" ], "type": "time", "id": "GDS2323_2" }, { "dataset_id": "GDS2323", "description": "2 d", "sample_id": [ "GSM105323", "GSM105324", "GSM105325" ], "type": "time", "id": "GDS2323_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2323", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2323.tab", "compression": "gz" } ], [ [ "GDS2324.tab" ], { "title": "Low concentrations of 17beta-estradiol effect on breast cancer cell line", "description": "Analysis of breast cancer MCF7/BUS cells treated with 17beta-estradiol (E2) at concentrations up to 100 pM. Results compared to that from an experiment examining the response to hormone starvation (GDS2323). Results provide insight into the E2 sensitivity of E2 inducible or suppressible genes.", "type": "Expression profiling by array", "pubmed_id": "14610279", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE4668", "order": "ordered", "update_date": "Sep 25 2006", "subsets": [ { "dataset_id": "GDS2324", "description": "0 pM", "sample_id": [ "GSM105292", "GSM105293", "GSM105294", "GSM105295", "GSM105296" ], "type": "dose", "id": "GDS2324_1" }, { "dataset_id": "GDS2324", "description": "10 pM", "sample_id": [ "GSM105297", "GSM105298", "GSM105299", "GSM105300", "GSM105301" ], "type": "dose", "id": "GDS2324_2" }, { "dataset_id": "GDS2324", "description": "30 pM", "sample_id": [ "GSM105302", "GSM105303", "GSM105304", "GSM105305", "GSM105306" ], "type": "dose", "id": "GDS2324_3" }, { "dataset_id": "GDS2324", "description": "60 pM", "sample_id": [ "GSM105307", "GSM105308", "GSM105309", "GSM105310", "GSM105311" ], "type": "dose", "id": "GDS2324_4" }, { "dataset_id": "GDS2324", "description": "100 pM", "sample_id": [ "GSM105312", "GSM105313", "GSM105314", "GSM105315", "GSM105316" ], "type": "dose", "id": "GDS2324_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2324", "version": 1.0, "instances": "25", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2324.tab", "compression": "gz" } ], [ [ "GDS2327.tab" ], { "title": "Transgenic T-cell receptor model of tolerant CD8+ T cells", "description": "Analysis of tolerant, na\u00efve, and memory CD8+ T cells purified from TCRxGag transgenics. T cell tolerance to self-proteins prevents autoimmunity but impedes the response to tumor-associated antigens. Results provide insight into the feasibility of rescuing tolerant cells for tumor immunotherapy.", "type": "Expression profiling by array", "pubmed_id": "16474399", "platform": "GPL1073", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31373", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3800", "order": "none", "update_date": "Oct 25 2006", "subsets": [ { "dataset_id": "GDS2327", "description": "naive T cells", "sample_id": [ "GSM87300", "GSM87301" ], "type": "cell type", "id": "GDS2327_1" }, { "dataset_id": "GDS2327", "description": "tolerant T cells", "sample_id": [ "GSM87304", "GSM87305" ], "type": "cell type", "id": "GDS2327_2" }, { "dataset_id": "GDS2327", "description": "memory T cells", "sample_id": [ "GSM87302", "GSM87303" ], "type": "cell type", "id": "GDS2327_3" } ], "taxid": "10090", "genes": 26084, "aggregation_function": "mean", "name": "GDS2327", "version": 1.0, "instances": "6", "variables": 26086, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2327.tab", "compression": "gz" } ], [ [ "GDS2329.tab" ], { "title": "Acute myocardial infarction model: time course (MG-U74A)", "description": "Analysis of left heart ventricles (LV) at various time points up to 48 hours following surgically induced acute myocardial infarction (AMI). Ischemic/infarcted tissue, surviving free wall, and the interventricular septum of LV examined. Results provide insight into the molecular pathogenesis of AMI.", "type": "Expression profiling by array", "pubmed_id": "16845475", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "count", "reference_series": "GSE4648", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2329", "description": "naive", "sample_id": [ "GSM104529", "GSM104530", "GSM104589", "GSM104590", "GSM104631", "GSM104688" ], "type": "disease state", "id": "GDS2329_1" }, { "dataset_id": "GDS2329", "description": "sham", "sample_id": [ "GSM104537", "GSM104538", "GSM104539", "GSM104540", "GSM104541", "GSM104542", "GSM104597", "GSM104598", "GSM104599", "GSM104600", "GSM104601", "GSM104602", "GSM104638", "GSM104639", "GSM104640", "GSM104641", "GSM104642", "GSM104643", "GSM104695", "GSM104696", "GSM104697", "GSM104698", "GSM104699", "GSM104700" ], "type": "disease state", "id": "GDS2329_2" }, { "dataset_id": "GDS2329", "description": "AMI", "sample_id": [ "GSM104531", "GSM104532", "GSM104533", "GSM104534", "GSM104535", "GSM104536", "GSM104571", "GSM104572", "GSM104573", "GSM104574", "GSM104575", "GSM104576", "GSM104591", "GSM104592", "GSM104593", "GSM104594", "GSM104595", "GSM104596", "GSM104632", "GSM104633", "GSM104634", "GSM104635", "GSM104636", "GSM104637", "GSM104670", "GSM104671", "GSM104672", "GSM104673", "GSM104674", "GSM104675", "GSM104689", "GSM104690", "GSM104691", "GSM104692", "GSM104693", "GSM104694" ], "type": "disease state", "id": "GDS2329_3" }, { "dataset_id": "GDS2329", "description": "left ventricle", "sample_id": [ "GSM104529", "GSM104530", "GSM104537", "GSM104538", "GSM104539", "GSM104540", "GSM104541", "GSM104542", "GSM104631", "GSM104638", "GSM104639", "GSM104640", "GSM104641", "GSM104642", "GSM104643" ], "type": "tissue", "id": "GDS2329_4" }, { "dataset_id": "GDS2329", "description": "interventricular septum", "sample_id": [ "GSM104589", "GSM104590", "GSM104591", "GSM104592", "GSM104593", "GSM104594", "GSM104595", "GSM104596", "GSM104597", "GSM104598", "GSM104599", "GSM104600", "GSM104601", "GSM104602", "GSM104688", "GSM104689", "GSM104690", "GSM104691", "GSM104692", "GSM104693", "GSM104694", "GSM104695", "GSM104696", "GSM104697", "GSM104698", "GSM104699", "GSM104700" ], "type": "tissue", "id": "GDS2329_5" }, { "dataset_id": "GDS2329", "description": "surviving free wall", "sample_id": [ "GSM104571", "GSM104572", "GSM104573", "GSM104574", "GSM104575", "GSM104576", "GSM104670", "GSM104671", "GSM104672", "GSM104673", "GSM104674", "GSM104675" ], "type": "tissue", "id": "GDS2329_6" }, { "dataset_id": "GDS2329", "description": "ischemic/infarcted", "sample_id": [ "GSM104531", "GSM104532", "GSM104533", "GSM104534", "GSM104535", "GSM104536", "GSM104632", "GSM104633", "GSM104634", "GSM104635", "GSM104636", "GSM104637" ], "type": "tissue", "id": "GDS2329_7" }, { "dataset_id": "GDS2329", "description": "15 min", "sample_id": [ "GSM104531", "GSM104537", "GSM104571", "GSM104591", "GSM104597", "GSM104632", "GSM104638", "GSM104670", "GSM104689", "GSM104695" ], "type": "time", "id": "GDS2329_8" }, { "dataset_id": "GDS2329", "description": "1 h", "sample_id": [ "GSM104532", "GSM104538", "GSM104572", "GSM104592", "GSM104598", "GSM104633", "GSM104639", "GSM104671", "GSM104690", "GSM104696" ], "type": "time", "id": "GDS2329_9" }, { "dataset_id": "GDS2329", "description": "4 h", "sample_id": [ "GSM104533", "GSM104539", "GSM104573", "GSM104593", "GSM104599", "GSM104634", "GSM104640", "GSM104672", "GSM104691", "GSM104697" ], "type": "time", "id": "GDS2329_10" }, { "dataset_id": "GDS2329", "description": "12 h", "sample_id": [ "GSM104534", "GSM104540", "GSM104574", "GSM104594", "GSM104600", "GSM104635", "GSM104641", "GSM104673", "GSM104692", "GSM104698" ], "type": "time", "id": "GDS2329_11" }, { "dataset_id": "GDS2329", "description": "24 h", "sample_id": [ "GSM104535", "GSM104541", "GSM104575", "GSM104595", "GSM104601", "GSM104636", "GSM104642", "GSM104674", "GSM104693", "GSM104699" ], "type": "time", "id": "GDS2329_12" }, { "dataset_id": "GDS2329", "description": "48 h", "sample_id": [ "GSM104536", "GSM104542", "GSM104576", "GSM104596", "GSM104602", "GSM104637", "GSM104643", "GSM104675", "GSM104694", "GSM104700" ], "type": "time", "id": "GDS2329_13" }, { "dataset_id": "GDS2329", "description": "not applicable", "sample_id": [ "GSM104529", "GSM104530", "GSM104589", "GSM104590", "GSM104631", "GSM104688" ], "type": "time", "id": "GDS2329_14" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2329", "version": 1.0, "instances": "66", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2329.tab", "compression": "gz" } ], [ [ "GDS233.tab" ], { "title": "Muscle regeneration (U74Av1)", "description": "Cardiotoxin injected into mouse gastrocnemius muscle to induce muscle regeneration. Muscles profiled at 27 time points (0-40 days) post-injection. Transcriptional regulatory pathways defined.", "type": "Expression profiling by array", "pubmed_id": [ "12023284", "25313409" ], "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE469", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS233", "description": "0 hour", "sample_id": [ "GSM4246", "GSM4248" ], "type": "time", "id": "GDS233_1" }, { "dataset_id": "GDS233", "description": "12 hour", "sample_id": [ "GSM4258", "GSM4260" ], "type": "time", "id": "GDS233_2" }, { "dataset_id": "GDS233", "description": "1 day", "sample_id": [ "GSM4270", "GSM4271" ], "type": "time", "id": "GDS233_3" }, { "dataset_id": "GDS233", "description": "2 day", "sample_id": [ "GSM4276", "GSM4277" ], "type": "time", "id": "GDS233_4" }, { "dataset_id": "GDS233", "description": "4 day", "sample_id": [ "GSM4290", "GSM4291" ], "type": "time", "id": "GDS233_5" }, { "dataset_id": "GDS233", "description": "10 day", "sample_id": [ "GSM4250", "GSM4253" ], "type": "time", "id": "GDS233_6" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS233", "version": 1.0, "instances": "12", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS233.tab", "compression": "gz" } ], [ [ "GDS2330.tab" ], { "title": "Acute myocardial infarction model: time course (MG-U74B)", "description": "Analysis of left heart ventricles (LV) at various time points up to 48 hours following surgically induced acute myocardial infarction (AMI). Ischemic/infarcted tissue, surviving free wall, and the interventricular septum of LV examined. Results provide insight into the molecular pathogenesis of AMI.", "type": "Expression profiling by array", "pubmed_id": "16845475", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "count", "reference_series": "GSE4648", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2330", "description": "naive", "sample_id": [ "GSM104543", "GSM104544", "GSM104603", "GSM104604", "GSM104644", "GSM104701" ], "type": "disease state", "id": "GDS2330_1" }, { "dataset_id": "GDS2330", "description": "sham", "sample_id": [ "GSM104551", "GSM104552", "GSM104553", "GSM104554", "GSM104555", "GSM104556", "GSM104611", "GSM104612", "GSM104613", "GSM104614", "GSM104615", "GSM104616", "GSM104651", "GSM104652", "GSM104653", "GSM104654", "GSM104655", "GSM104656", "GSM104708", "GSM104709", "GSM104710", "GSM104711", "GSM104712", "GSM104713" ], "type": "disease state", "id": "GDS2330_2" }, { "dataset_id": "GDS2330", "description": "AMI", "sample_id": [ "GSM104545", "GSM104546", "GSM104547", "GSM104548", "GSM104549", "GSM104550", "GSM104577", "GSM104578", "GSM104579", "GSM104580", "GSM104581", "GSM104582", "GSM104605", "GSM104606", "GSM104607", "GSM104608", "GSM104609", "GSM104610", "GSM104645", "GSM104646", "GSM104647", "GSM104648", "GSM104649", "GSM104650", "GSM104676", "GSM104677", "GSM104678", "GSM104679", "GSM104680", "GSM104681", "GSM104702", "GSM104703", "GSM104704", "GSM104705", "GSM104706", "GSM104707" ], "type": "disease state", "id": "GDS2330_3" }, { "dataset_id": "GDS2330", "description": "left ventricle", "sample_id": [ "GSM104543", "GSM104544", "GSM104551", "GSM104552", "GSM104553", "GSM104554", "GSM104555", "GSM104556", "GSM104644", "GSM104651", "GSM104652", "GSM104653", "GSM104654", "GSM104655", "GSM104656" ], "type": "tissue", "id": "GDS2330_4" }, { "dataset_id": "GDS2330", "description": "interventricular septum", "sample_id": [ "GSM104603", "GSM104604", "GSM104605", "GSM104606", "GSM104607", "GSM104608", "GSM104609", "GSM104610", "GSM104611", "GSM104612", "GSM104613", "GSM104614", "GSM104615", "GSM104616", "GSM104701", "GSM104702", "GSM104703", "GSM104704", "GSM104705", "GSM104706", "GSM104707", "GSM104708", "GSM104709", "GSM104710", "GSM104711", "GSM104712", "GSM104713" ], "type": "tissue", "id": "GDS2330_5" }, { "dataset_id": "GDS2330", "description": "surviving free wall", "sample_id": [ "GSM104577", "GSM104578", "GSM104579", "GSM104580", "GSM104581", "GSM104582", "GSM104676", "GSM104677", "GSM104678", "GSM104679", "GSM104680", "GSM104681" ], "type": "tissue", "id": "GDS2330_6" }, { "dataset_id": "GDS2330", "description": "ischemic/infarcted", "sample_id": [ "GSM104545", "GSM104546", "GSM104547", "GSM104548", "GSM104549", "GSM104550", "GSM104645", "GSM104646", "GSM104647", "GSM104648", "GSM104649", "GSM104650" ], "type": "tissue", "id": "GDS2330_7" }, { "dataset_id": "GDS2330", "description": "15 min", "sample_id": [ "GSM104545", "GSM104551", "GSM104577", "GSM104605", "GSM104611", "GSM104645", "GSM104651", "GSM104676", "GSM104702", "GSM104708" ], "type": "time", "id": "GDS2330_8" }, { "dataset_id": "GDS2330", "description": "1 h", "sample_id": [ "GSM104546", "GSM104552", "GSM104578", "GSM104606", "GSM104612", "GSM104646", "GSM104652", "GSM104677", "GSM104703", "GSM104709" ], "type": "time", "id": "GDS2330_9" }, { "dataset_id": "GDS2330", "description": "4 h", "sample_id": [ "GSM104547", "GSM104553", "GSM104579", "GSM104607", "GSM104613", "GSM104647", "GSM104653", "GSM104678", "GSM104704", "GSM104710" ], "type": "time", "id": "GDS2330_10" }, { "dataset_id": "GDS2330", "description": "12 h", "sample_id": [ "GSM104548", "GSM104554", "GSM104580", "GSM104608", "GSM104614", "GSM104648", "GSM104654", "GSM104679", "GSM104705", "GSM104711" ], "type": "time", "id": "GDS2330_11" }, { "dataset_id": "GDS2330", "description": "24 h", "sample_id": [ "GSM104549", "GSM104555", "GSM104581", "GSM104609", "GSM104615", "GSM104649", "GSM104655", "GSM104680", "GSM104706", "GSM104712" ], "type": "time", "id": "GDS2330_12" }, { "dataset_id": "GDS2330", "description": "48 h", "sample_id": [ "GSM104550", "GSM104556", "GSM104582", "GSM104610", "GSM104616", "GSM104650", "GSM104656", "GSM104681", "GSM104707", "GSM104713" ], "type": "time", "id": "GDS2330_13" }, { "dataset_id": "GDS2330", "description": "not applicable", "sample_id": [ "GSM104543", "GSM104544", "GSM104603", "GSM104604", "GSM104644", "GSM104701" ], "type": "time", "id": "GDS2330_14" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2330", "version": 1.0, "instances": "66", "variables": 9257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2330.tab", "compression": "gz" } ], [ [ "GDS2331.tab" ], { "title": "Acute myocardial infarction model: time course (MG-U74C)", "description": "Analysis of left heart ventricles (LV) at various time points up to 48 hours following surgically induced acute myocardial infarction (AMI). Ischemic/infarcted tissue, surviving free wall, and the interventricular septum of LV examined. Results provide insight into the molecular pathogenesis of AMI.", "type": "Expression profiling by array", "pubmed_id": "16845475", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "count", "reference_series": "GSE4648", "order": "none", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2331", "description": "naive", "sample_id": [ "GSM104557", "GSM104558", "GSM104617", "GSM104618", "GSM104657", "GSM104714" ], "type": "disease state", "id": "GDS2331_1" }, { "dataset_id": "GDS2331", "description": "sham", "sample_id": [ "GSM104565", "GSM104566", "GSM104567", "GSM104568", "GSM104569", "GSM104570", "GSM104625", "GSM104626", "GSM104627", "GSM104628", "GSM104629", "GSM104630", "GSM104664", "GSM104665", "GSM104666", "GSM104667", "GSM104668", "GSM104669", "GSM104721", "GSM104722", "GSM104723", "GSM104724", "GSM104725", "GSM104726" ], "type": "disease state", "id": "GDS2331_2" }, { "dataset_id": "GDS2331", "description": "AMI", "sample_id": [ "GSM104559", "GSM104560", "GSM104561", "GSM104562", "GSM104563", "GSM104564", "GSM104583", "GSM104584", "GSM104585", "GSM104586", "GSM104587", "GSM104588", "GSM104619", "GSM104620", "GSM104621", "GSM104622", "GSM104623", "GSM104624", "GSM104658", "GSM104659", "GSM104660", "GSM104661", "GSM104662", "GSM104663", "GSM104682", "GSM104683", "GSM104684", "GSM104685", "GSM104686", "GSM104687", "GSM104715", "GSM104716", "GSM104717", "GSM104718", "GSM104719", "GSM104720" ], "type": "disease state", "id": "GDS2331_3" }, { "dataset_id": "GDS2331", "description": "left ventricle", "sample_id": [ "GSM104557", "GSM104558", "GSM104565", "GSM104566", "GSM104567", "GSM104568", "GSM104569", "GSM104570", "GSM104657", "GSM104664", "GSM104665", "GSM104666", "GSM104667", "GSM104668", "GSM104669" ], "type": "tissue", "id": "GDS2331_4" }, { "dataset_id": "GDS2331", "description": "interventricular septum", "sample_id": [ "GSM104617", "GSM104618", "GSM104619", "GSM104620", "GSM104621", "GSM104622", "GSM104623", "GSM104624", "GSM104625", "GSM104626", "GSM104627", "GSM104628", "GSM104629", "GSM104630", "GSM104714", "GSM104715", "GSM104716", "GSM104717", "GSM104718", "GSM104719", "GSM104720", "GSM104721", "GSM104722", "GSM104723", "GSM104724", "GSM104725", "GSM104726" ], "type": "tissue", "id": "GDS2331_5" }, { "dataset_id": "GDS2331", "description": "surviving free wall", "sample_id": [ "GSM104583", "GSM104584", "GSM104585", "GSM104586", "GSM104587", "GSM104588", "GSM104682", "GSM104683", "GSM104684", "GSM104685", "GSM104686", "GSM104687" ], "type": "tissue", "id": "GDS2331_6" }, { "dataset_id": "GDS2331", "description": "ischemic/infarcted", "sample_id": [ "GSM104559", "GSM104560", "GSM104561", "GSM104562", "GSM104563", "GSM104564", "GSM104658", "GSM104659", "GSM104660", "GSM104661", "GSM104662", "GSM104663" ], "type": "tissue", "id": "GDS2331_7" }, { "dataset_id": "GDS2331", "description": "15 min", "sample_id": [ "GSM104559", "GSM104565", "GSM104583", "GSM104619", "GSM104625", "GSM104658", "GSM104664", "GSM104682", "GSM104715", "GSM104721" ], "type": "time", "id": "GDS2331_8" }, { "dataset_id": "GDS2331", "description": "1 h", "sample_id": [ "GSM104560", "GSM104566", "GSM104584", "GSM104620", "GSM104626", "GSM104659", "GSM104665", "GSM104683", "GSM104716", "GSM104722" ], "type": "time", "id": "GDS2331_9" }, { "dataset_id": "GDS2331", "description": "4 h", "sample_id": [ "GSM104561", "GSM104567", "GSM104585", "GSM104621", "GSM104627", "GSM104660", "GSM104666", "GSM104684", "GSM104717", "GSM104723" ], "type": "time", "id": "GDS2331_10" }, { "dataset_id": "GDS2331", "description": "12 h", "sample_id": [ "GSM104562", "GSM104568", "GSM104586", "GSM104622", "GSM104628", "GSM104661", "GSM104667", "GSM104685", "GSM104718", "GSM104724" ], "type": "time", "id": "GDS2331_11" }, { "dataset_id": "GDS2331", "description": "24 h", "sample_id": [ "GSM104563", "GSM104569", "GSM104587", "GSM104623", "GSM104629", "GSM104662", "GSM104668", "GSM104686", "GSM104719", "GSM104725" ], "type": "time", "id": "GDS2331_12" }, { "dataset_id": "GDS2331", "description": "48 h", "sample_id": [ "GSM104564", "GSM104570", "GSM104588", "GSM104624", "GSM104630", "GSM104663", "GSM104669", "GSM104687", "GSM104720", "GSM104726" ], "type": "time", "id": "GDS2331_13" }, { "dataset_id": "GDS2331", "description": "not applicable", "sample_id": [ "GSM104557", "GSM104558", "GSM104617", "GSM104618", "GSM104657", "GSM104714" ], "type": "time", "id": "GDS2331_14" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2331", "version": 1.0, "instances": "66", "variables": 9980, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2331.tab", "compression": "gz" } ], [ [ "GDS2332.tab" ], { "title": "Neisseria meningitidis non-adherent mutant infected umbilical vein endothelial cells", "description": "Analysis of umbilical vein endothelial cells 4 hours following infection with adherent wild type, frpC-deficient mutant, or the non-adherent (delta pilD) mutant form of Neisseria meningitidis. Results provide insight into the role of adherence-mediated signaling in N. meningitidis infections.", "type": "Expression profiling by array", "pubmed_id": "16958858", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE4646", "order": "none", "update_date": "Mar 30 2007", "subsets": [ { "dataset_id": "GDS2332", "description": "uninfected", "sample_id": [ "GSM104475", "GSM104476" ], "type": "infection", "id": "GDS2332_1" }, { "dataset_id": "GDS2332", "description": "wild type", "sample_id": [ "GSM104481", "GSM104482", "GSM104483" ], "type": "infection", "id": "GDS2332_2" }, { "dataset_id": "GDS2332", "description": "delta frpC/frpA mutant", "sample_id": [ "GSM104493", "GSM104494", "GSM104495" ], "type": "infection", "id": "GDS2332_3" }, { "dataset_id": "GDS2332", "description": "delta pilD mutant", "sample_id": [ "GSM104488", "GSM104489", "GSM104490" ], "type": "infection", "id": "GDS2332_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2332", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2332.tab", "compression": "gz" } ], [ [ "GDS2333.tab" ], { "title": "Neisseria meningitidis non-adherent mutant infected umbilical vein endothelial cells: time course", "description": "Analysis of umbilical vein endothelial cells 1 and 6 hours following infection with adherent wild type or the non-adherent (delta pilD) mutant form of Neisseria meningitidis. Results provide insight into the role of adherence-mediated signaling in N. meningitidis infections.", "type": "Expression profiling by array", "pubmed_id": "16958858", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4646", "order": "none", "update_date": "Mar 30 2007", "subsets": [ { "dataset_id": "GDS2333", "description": "uninfected", "sample_id": [ "GSM103452", "GSM104474", "GSM104477", "GSM104478" ], "type": "infection", "id": "GDS2333_1" }, { "dataset_id": "GDS2333", "description": "wild type", "sample_id": [ "GSM104479", "GSM104480", "GSM104484", "GSM104485" ], "type": "infection", "id": "GDS2333_2" }, { "dataset_id": "GDS2333", "description": "delta pilD mutant", "sample_id": [ "GSM104486", "GSM104487", "GSM104491", "GSM104492" ], "type": "infection", "id": "GDS2333_3" }, { "dataset_id": "GDS2333", "description": "1 h", "sample_id": [ "GSM103452", "GSM104474", "GSM104479", "GSM104480", "GSM104486", "GSM104487" ], "type": "time", "id": "GDS2333_4" }, { "dataset_id": "GDS2333", "description": "6 h", "sample_id": [ "GSM104477", "GSM104478", "GSM104484", "GSM104485", "GSM104491", "GSM104492" ], "type": "time", "id": "GDS2333_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2333", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2333.tab", "compression": "gz" } ], [ [ "GDS2334.tab" ], { "title": "Myod and Myog expression effect on myogenesis: time course", "description": "Temporal analysis of embryonic Myf-5/Myod null fibroblasts tranduced with a Myod-estrogen receptor hormone binding domain fusion protein alone or in combination with a constitutively expressed Myog. Results provide insight into the roles of Myod and Myog in muscle differentiation.", "type": "Expression profiling by array", "pubmed_id": "16437161", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE3858", "order": "none", "update_date": "Oct 16 2006", "subsets": [ { "dataset_id": "GDS2334", "description": "0 h", "sample_id": [ "GSM88075", "GSM88076", "GSM88077", "GSM88078", "GSM88079", "GSM88080" ], "type": "time", "id": "GDS2334_1" }, { "dataset_id": "GDS2334", "description": "12 h", "sample_id": [ "GSM88081", "GSM88082", "GSM88083", "GSM88084", "GSM88085", "GSM88086", "GSM88087", "GSM88088", "GSM88089", "GSM88090", "GSM88091", "GSM88092" ], "type": "time", "id": "GDS2334_2" }, { "dataset_id": "GDS2334", "description": "24 h", "sample_id": [ "GSM88093", "GSM88094", "GSM88095", "GSM88096", "GSM88097", "GSM88098", "GSM88099", "GSM88100", "GSM88101" ], "type": "time", "id": "GDS2334_3" }, { "dataset_id": "GDS2334", "description": "48 h", "sample_id": [ "GSM88102", "GSM88103", "GSM88104", "GSM88105", "GSM88106", "GSM88107", "GSM88108", "GSM88109", "GSM88110" ], "type": "time", "id": "GDS2334_4" }, { "dataset_id": "GDS2334", "description": "Myod transduced", "sample_id": [ "GSM88075", "GSM88076", "GSM88077", "GSM88081", "GSM88082", "GSM88083", "GSM88084", "GSM88085", "GSM88086", "GSM88093", "GSM88094", "GSM88095", "GSM88096", "GSM88097", "GSM88098", "GSM88102", "GSM88103", "GSM88104", "GSM88105", "GSM88106", "GSM88107" ], "type": "cell line", "id": "GDS2334_5" }, { "dataset_id": "GDS2334", "description": "Myod and Myog transduced", "sample_id": [ "GSM88078", "GSM88079", "GSM88080", "GSM88087", "GSM88088", "GSM88089", "GSM88090", "GSM88091", "GSM88092", "GSM88099", "GSM88100", "GSM88101", "GSM88108", "GSM88109", "GSM88110" ], "type": "cell line", "id": "GDS2334_6" }, { "dataset_id": "GDS2334", "description": "uninduced", "sample_id": [ "GSM88075", "GSM88076", "GSM88077", "GSM88078", "GSM88079", "GSM88080" ], "type": "agent", "id": "GDS2334_7" }, { "dataset_id": "GDS2334", "description": "DM", "sample_id": [ "GSM88084", "GSM88085", "GSM88086", "GSM88090", "GSM88091", "GSM88092", "GSM88096", "GSM88097", "GSM88098", "GSM88099", "GSM88100", "GSM88101", "GSM88105", "GSM88106", "GSM88107", "GSM88108", "GSM88109", "GSM88110" ], "type": "agent", "id": "GDS2334_8" }, { "dataset_id": "GDS2334", "description": "DM, beta-estradiol", "sample_id": [ "GSM88081", "GSM88082", "GSM88083", "GSM88087", "GSM88088", "GSM88089", "GSM88093", "GSM88094", "GSM88095", "GSM88102", "GSM88103", "GSM88104" ], "type": "agent", "id": "GDS2334_9" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2334", "version": 1.0, "instances": "36", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2334.tab", "compression": "gz" } ], [ [ "GDS2335.tab" ], { "title": "Exercise effect on the diabetic cardiac muscle: time course", "description": "Analysis of experimental type 1 diabetic cardiac muscles of NMRI males subjected to endurance training for up to 5 weeks. Diabetes induced by a single peritoneal injection of streptozotocin.", "type": "Expression profiling by array", "pubmed_id": "17003243", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4616", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2335", "description": "healthy", "sample_id": [ "GSM103328", "GSM103329", "GSM103330", "GSM103337", "GSM103338", "GSM103339" ], "type": "disease state", "id": "GDS2335_1" }, { "dataset_id": "GDS2335", "description": "diabetic", "sample_id": [ "GSM103331", "GSM103332", "GSM103333", "GSM103334", "GSM103335", "GSM103336" ], "type": "disease state", "id": "GDS2335_2" }, { "dataset_id": "GDS2335", "description": "sedentary", "sample_id": [ "GSM103328", "GSM103329", "GSM103330", "GSM103331", "GSM103332", "GSM103333" ], "type": "protocol", "id": "GDS2335_3" }, { "dataset_id": "GDS2335", "description": "training", "sample_id": [ "GSM103334", "GSM103335", "GSM103336", "GSM103337", "GSM103338", "GSM103339" ], "type": "protocol", "id": "GDS2335_4" }, { "dataset_id": "GDS2335", "description": "1 wk", "sample_id": [ "GSM103328", "GSM103331", "GSM103334", "GSM103337" ], "type": "time", "id": "GDS2335_5" }, { "dataset_id": "GDS2335", "description": "3 wk", "sample_id": [ "GSM103329", "GSM103332", "GSM103335", "GSM103338" ], "type": "time", "id": "GDS2335_6" }, { "dataset_id": "GDS2335", "description": "5 wk", "sample_id": [ "GSM103330", "GSM103333", "GSM103336", "GSM103339" ], "type": "time", "id": "GDS2335_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2335", "version": 1.0, "instances": "12", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2335.tab", "compression": "gz" } ], [ [ "GDS2336.tab" ], { "title": "Caffeine effect on TOR complex 1 mutant: dose response", "description": "Analysis of Tor1p mutant treated with up to 9 mM caffeine. Tor1p is a component of TOR complex 1 (TORC1), a regulator of growth in eukaryotic cells. I1954V and W2176R substitutions in Tor1p confer resistance to caffeine. Results provide insight into the function and activity of TORC1.", "type": "Expression profiling by array", "pubmed_id": "16923813", "platform": "GPL2763", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6257", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4586", "order": "none", "update_date": "May 05 2015", "subsets": [ { "dataset_id": "GDS2336", "description": "wild type", "sample_id": [ "GSM102675", "GSM102676", "GSM102677" ], "type": "genotype/variation", "id": "GDS2336_1" }, { "dataset_id": "GDS2336", "description": "caffeine resistant mutant", "sample_id": [ "GSM102678", "GSM102679", "GSM102680" ], "type": "genotype/variation", "id": "GDS2336_2" }, { "dataset_id": "GDS2336", "description": "3 mM", "sample_id": [ "GSM102675", "GSM102678" ], "type": "dose", "id": "GDS2336_3" }, { "dataset_id": "GDS2336", "description": "6 mM", "sample_id": [ "GSM102676", "GSM102679" ], "type": "dose", "id": "GDS2336_4" }, { "dataset_id": "GDS2336", "description": "9 mM", "sample_id": [ "GSM102677", "GSM102680" ], "type": "dose", "id": "GDS2336_5" } ], "taxid": "4932", "genes": 6184, "aggregation_function": "mean", "name": "GDS2336", "version": 1.0, "instances": "6", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2336.tab", "compression": "gz" } ], [ [ "GDS2338.tab" ], { "title": "Caffeine and rapamycin effect on various wild type strains", "description": "Analysis of W303, S288c, and Sigma 2000 wild type strains treated with rapamycin or caffeine. Results provide insight into the influence of genetic background on the response to each drug.", "type": "Expression profiling by array", "pubmed_id": "16923813", "platform": "GPL2763", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6257", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4584", "order": "none", "update_date": "Apr 13 2007", "subsets": [ { "dataset_id": "GDS2338", "description": "W303", "sample_id": [ "GSM102659", "GSM102664" ], "type": "strain", "id": "GDS2338_1" }, { "dataset_id": "GDS2338", "description": "S288c", "sample_id": [ "GSM102668", "GSM102670" ], "type": "strain", "id": "GDS2338_2" }, { "dataset_id": "GDS2338", "description": "Sigma 2000", "sample_id": [ "GSM102672", "GSM102673" ], "type": "strain", "id": "GDS2338_3" }, { "dataset_id": "GDS2338", "description": "rapamycin", "sample_id": [ "GSM102659", "GSM102668", "GSM102672" ], "type": "agent", "id": "GDS2338_4" }, { "dataset_id": "GDS2338", "description": "caffeine", "sample_id": [ "GSM102664", "GSM102670", "GSM102673" ], "type": "agent", "id": "GDS2338_5" } ], "taxid": "4932", "genes": 6184, "aggregation_function": "mean", "name": "GDS2338", "version": 1.0, "instances": "6", "variables": 6187, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2338.tab", "compression": "gz" } ], [ [ "GDS2339.tab" ], { "title": "Hepatitis B surface antigen effect on hepatoma cell line", "description": "Analysis of hepatoma HepG2 cells secreting the hepatitis B surface antigen (HBsAg). Transfected cells examined 4 and 8 days after seeding. Results provide insight into the effect of persistently secreting HBsAg on the host cell.", "type": "Expression profiling by array", "pubmed_id": "17947518", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4549", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2339", "description": "control", "sample_id": [ "GSM101530", "GSM101700" ], "type": "agent", "id": "GDS2339_1" }, { "dataset_id": "GDS2339", "description": "HBsAg", "sample_id": [ "GSM101696", "GSM101704" ], "type": "agent", "id": "GDS2339_2" }, { "dataset_id": "GDS2339", "description": "4 d", "sample_id": [ "GSM101530", "GSM101696" ], "type": "time", "id": "GDS2339_3" }, { "dataset_id": "GDS2339", "description": "8 d", "sample_id": [ "GSM101700", "GSM101704" ], "type": "time", "id": "GDS2339_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2339", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2339.tab", "compression": "gz" } ], [ [ "GDS234.tab" ], { "title": "Muscle regeneration (U74Av2)", "description": "Cardiotoxin injected into gastrocnemius muscle to induce muscle regeneration. Muscles profiled at 27 time points (0-40 days) post-injection. Transcriptional regulatory pathways defined.", "type": "Expression profiling by array", "pubmed_id": [ "12023284", "25313409" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE469", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS234", "description": "0 hour", "sample_id": [ "GSM4247", "GSM4249" ], "type": "time", "id": "GDS234_1" }, { "dataset_id": "GDS234", "description": "12 hour", "sample_id": [ "GSM4259", "GSM4261" ], "type": "time", "id": "GDS234_2" }, { "dataset_id": "GDS234", "description": "1 day", "sample_id": [ "GSM4268", "GSM4269" ], "type": "time", "id": "GDS234_3" }, { "dataset_id": "GDS234", "description": "2 day", "sample_id": [ "GSM4274", "GSM4275" ], "type": "time", "id": "GDS234_4" }, { "dataset_id": "GDS234", "description": "3 day", "sample_id": [ "GSM4282", "GSM4283" ], "type": "time", "id": "GDS234_5" }, { "dataset_id": "GDS234", "description": "3.5 day", "sample_id": [ "GSM4278", "GSM4279" ], "type": "time", "id": "GDS234_6" }, { "dataset_id": "GDS234", "description": "4 day", "sample_id": [ "GSM4288", "GSM4289" ], "type": "time", "id": "GDS234_7" }, { "dataset_id": "GDS234", "description": "4.5 day", "sample_id": [ "GSM4284", "GSM4285" ], "type": "time", "id": "GDS234_8" }, { "dataset_id": "GDS234", "description": "5 day", "sample_id": [ "GSM4294", "GSM4295" ], "type": "time", "id": "GDS234_9" }, { "dataset_id": "GDS234", "description": "5.5 day", "sample_id": [ "GSM4292", "GSM4293" ], "type": "time", "id": "GDS234_10" }, { "dataset_id": "GDS234", "description": "6 day", "sample_id": [ "GSM4298", "GSM4299" ], "type": "time", "id": "GDS234_11" }, { "dataset_id": "GDS234", "description": "6.5 day", "sample_id": [ "GSM4296", "GSM4297" ], "type": "time", "id": "GDS234_12" }, { "dataset_id": "GDS234", "description": "7 day", "sample_id": [ "GSM4302", "GSM4303" ], "type": "time", "id": "GDS234_13" }, { "dataset_id": "GDS234", "description": "7.5 day", "sample_id": [ "GSM4300", "GSM4301" ], "type": "time", "id": "GDS234_14" }, { "dataset_id": "GDS234", "description": "8 day", "sample_id": [ "GSM4306", "GSM4307" ], "type": "time", "id": "GDS234_15" }, { "dataset_id": "GDS234", "description": "8.5 day", "sample_id": [ "GSM4304", "GSM4305" ], "type": "time", "id": "GDS234_16" }, { "dataset_id": "GDS234", "description": "9 day", "sample_id": [ "GSM4310", "GSM4311" ], "type": "time", "id": "GDS234_17" }, { "dataset_id": "GDS234", "description": "9.5 day", "sample_id": [ "GSM4308", "GSM4309" ], "type": "time", "id": "GDS234_18" }, { "dataset_id": "GDS234", "description": "10 day", "sample_id": [ "GSM4251", "GSM4252" ], "type": "time", "id": "GDS234_19" }, { "dataset_id": "GDS234", "description": "11 day", "sample_id": [ "GSM4254", "GSM4255" ], "type": "time", "id": "GDS234_20" }, { "dataset_id": "GDS234", "description": "12 day", "sample_id": [ "GSM4256", "GSM4257" ], "type": "time", "id": "GDS234_21" }, { "dataset_id": "GDS234", "description": "13 day", "sample_id": [ "GSM4262", "GSM4263" ], "type": "time", "id": "GDS234_22" }, { "dataset_id": "GDS234", "description": "14 day", "sample_id": [ "GSM4264", "GSM4265" ], "type": "time", "id": "GDS234_23" }, { "dataset_id": "GDS234", "description": "16 day", "sample_id": [ "GSM4266", "GSM4267" ], "type": "time", "id": "GDS234_24" }, { "dataset_id": "GDS234", "description": "20 day", "sample_id": [ "GSM4272", "GSM4273" ], "type": "time", "id": "GDS234_25" }, { "dataset_id": "GDS234", "description": "30 day", "sample_id": [ "GSM4280", "GSM4281" ], "type": "time", "id": "GDS234_26" }, { "dataset_id": "GDS234", "description": "40 day", "sample_id": [ "GSM4286", "GSM4287" ], "type": "time", "id": "GDS234_27" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS234", "version": 1.0, "instances": "54", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS234.tab", "compression": "gz" } ], [ [ "GDS2341.tab" ], { "title": "Type I and Type II interferons effect on lung epithelial cell line: time course", "description": "Analysis of lung epithelial A549 cells 6 and 24 hours following treatment with type I interferon (IFN), type II IFN, or both. Results provide insight into the molecular basis of the synergistic antiviral and antiproliferative effects observed when type I and type II IFNs are combined.", "type": "Expression profiling by array", "pubmed_id": "16800785", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE5542", "order": "none", "update_date": "Sep 26 2006", "subsets": [ { "dataset_id": "GDS2341", "description": "untreated", "sample_id": [ "GSM128888", "GSM128893", "GSM128897", "GSM128898", "GSM128902", "GSM128906", "GSM128911", "GSM128915" ], "type": "agent", "id": "GDS2341_1" }, { "dataset_id": "GDS2341", "description": "Type I IFN", "sample_id": [ "GSM128884", "GSM128890", "GSM128894", "GSM128899", "GSM128903", "GSM128907", "GSM128908", "GSM128912" ], "type": "agent", "id": "GDS2341_2" }, { "dataset_id": "GDS2341", "description": "Type II IFN", "sample_id": [ "GSM128885", "GSM128889", "GSM128891", "GSM128895", "GSM128900", "GSM128904", "GSM128909", "GSM128913" ], "type": "agent", "id": "GDS2341_3" }, { "dataset_id": "GDS2341", "description": "Types I and II IFNs", "sample_id": [ "GSM128886", "GSM128887", "GSM128892", "GSM128896", "GSM128901", "GSM128905", "GSM128910", "GSM128914" ], "type": "agent", "id": "GDS2341_4" }, { "dataset_id": "GDS2341", "description": "6 h", "sample_id": [ "GSM128884", "GSM128885", "GSM128887", "GSM128888", "GSM128890", "GSM128891", "GSM128892", "GSM128893", "GSM128899", "GSM128900", "GSM128901", "GSM128902", "GSM128908", "GSM128909", "GSM128910", "GSM128911" ], "type": "time", "id": "GDS2341_5" }, { "dataset_id": "GDS2341", "description": "24 h", "sample_id": [ "GSM128886", "GSM128889", "GSM128894", "GSM128895", "GSM128896", "GSM128897", "GSM128898", "GSM128903", "GSM128904", "GSM128905", "GSM128906", "GSM128907", "GSM128912", "GSM128913", "GSM128914", "GSM128915" ], "type": "time", "id": "GDS2341_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2341", "version": 1.0, "instances": "32", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2341.tab", "compression": "gz" } ], [ [ "GDS2342.tab" ], { "title": "Chronic phase chronic myelogenous leukemia: CD34+ hematopoietic stem and progenitor cells", "description": "Analysis of CD34+ hematopoietic stem and progenitor cells from the bone marrow of untreated patients with chronic myelogenous leukemia (CML) in first chronic phase. Results provide insight into the pathogenesis of chronic phase CML.", "type": "Expression profiling by array", "pubmed_id": [ "17252012", "27281222" ], "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE5550", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS2342", "description": "normal", "sample_id": [ "GSM129002", "GSM129050", "GSM129051", "GSM129054", "GSM129055", "GSM129056", "GSM129057", "GSM129058" ], "type": "disease state", "id": "GDS2342_1" }, { "dataset_id": "GDS2342", "description": "chronic-phase CML", "sample_id": [ "GSM129059", "GSM129060", "GSM129061", "GSM129062", "GSM129063", "GSM129064", "GSM129065", "GSM129066", "GSM129067" ], "type": "disease state", "id": "GDS2342_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2342", "version": 1.0, "instances": "17", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2342.tab", "compression": "gz" } ], [ [ "GDS2343.tab" ], { "title": "Triterpenoid celastrol treatment and heat shock comparison", "description": "Analysis of wild type cells treated with 10 uM of the triterpenoid celastrol for 1 hour or subjected to heat shock at 39 degrees C for 30 minutes. Celestrol is a small molecule that activates the human heat shock transcription factor HSF1.", "type": "Expression profiling by array", "pubmed_id": "18199679", "platform": "GPL4226", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6911", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE5608", "order": "none", "update_date": "Sep 26 2006", "subsets": [ { "dataset_id": "GDS2343", "description": "heat", "sample_id": [ "GSM130883", "GSM130904" ], "type": "agent", "id": "GDS2343_1" }, { "dataset_id": "GDS2343", "description": "celastrol", "sample_id": [ "GSM130906", "GSM130934" ], "type": "agent", "id": "GDS2343_2" } ], "taxid": "4932", "genes": 6242, "aggregation_function": "mean", "name": "GDS2343", "version": 1.0, "instances": "4", "variables": 6244, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2343.tab", "compression": "gz" } ], [ [ "GDS2344.tab" ], { "title": "Bed nucleus of the stria terminalis, nucleus accumbens, and dorsal striatum comparison", "description": "Analysis of three regions of the brain that are dopamine targets and associated with addiction: bed nucleus of the stria terminalis (BNST), nucleus accumbens, and dorsal striatum. Tissues excised from the brains of 12-week-old C57BL/6J males.", "type": "Expression profiling by array", "pubmed_id": "17911379", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5763", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2344", "description": "BNST", "sample_id": [ "GSM134713", "GSM134714", "GSM134715" ], "type": "tissue", "id": "GDS2344_1" }, { "dataset_id": "GDS2344", "description": "nucleus accumbens", "sample_id": [ "GSM134716", "GSM134717", "GSM134718" ], "type": "tissue", "id": "GDS2344_2" }, { "dataset_id": "GDS2344", "description": "dorsal striatum", "sample_id": [ "GSM134719", "GSM134720", "GSM134721" ], "type": "tissue", "id": "GDS2344_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2344", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2344.tab", "compression": "gz" } ], [ [ "GDS2346.tab" ], { "title": "Reticulocyte binding-like homolog 2b knockout effect on 3D7 parasites", "description": "Analysis of reticulocyte binding-like homolog 2b (PfRh2b) null mutant 3D7 parasites. D10 isolate naturally lacks PfRh2b. Silencing of PfRh2b, a key invasion ligand, leads to altered invasion receptor dependency. Results provide insight into the molecular basis for invasion via an alternate pathway.", "type": "Expression profiling by array", "pubmed_id": "16362075", "platform": "GPL1892", "platform_organism": "Plasmodium falciparum", "platform_technology_type": "in situ oligonucleotide", "feature_count": "5340", "sample_organism": "Plasmodium falciparum", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE3877", "order": "none", "update_date": "Oct 16 2006", "subsets": [ { "dataset_id": "GDS2346", "description": "wildtype", "sample_id": [ "GSM88324", "GSM88325", "GSM88329", "GSM88330", "GSM88331" ], "type": "genotype/variation", "id": "GDS2346_1" }, { "dataset_id": "GDS2346", "description": "EBA140 KO", "sample_id": [ "GSM88326" ], "type": "genotype/variation", "id": "GDS2346_2" }, { "dataset_id": "GDS2346", "description": "EBA175 KO", "sample_id": [ "GSM88327" ], "type": "genotype/variation", "id": "GDS2346_3" }, { "dataset_id": "GDS2346", "description": "PfRh2b KO", "sample_id": [ "GSM88328", "GSM88332" ], "type": "genotype/variation", "id": "GDS2346_4" }, { "dataset_id": "GDS2346", "description": "SIR2 KO", "sample_id": [ "GSM88333" ], "type": "genotype/variation", "id": "GDS2346_5" }, { "dataset_id": "GDS2346", "description": "3D7", "sample_id": [ "GSM88324", "GSM88325", "GSM88326", "GSM88327", "GSM88328", "GSM88329", "GSM88332", "GSM88333" ], "type": "strain", "id": "GDS2346_6" }, { "dataset_id": "GDS2346", "description": "D10", "sample_id": [ "GSM88330", "GSM88331" ], "type": "strain", "id": "GDS2346_7" }, { "dataset_id": "GDS2346", "description": "asexual blood stage 24hr", "sample_id": [ "GSM88324", "GSM88333" ], "type": "development stage", "id": "GDS2346_8" }, { "dataset_id": "GDS2346", "description": "asexual blood stage 48hr", "sample_id": [ "GSM88325", "GSM88326", "GSM88327", "GSM88328", "GSM88329", "GSM88330", "GSM88331", "GSM88332" ], "type": "development stage", "id": "GDS2346_9" } ], "taxid": "5833", "genes": 5057, "aggregation_function": "mean", "name": "GDS2346", "version": 1.0, "instances": "10", "variables": 5061, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2346.tab", "compression": "gz" } ], [ [ "GDS2347.tab" ], { "title": "Wild type strain across two cell cycles (I)", "description": "Analysis of wild type W303 cells across two cell cycles, a length of 2 hours after synchronization with alpha factor. Results compared to those from an experiment using a yox1 yhp1 double mutant strain (GDS2318).", "type": "Expression profiling by array", "pubmed_id": "12464633", "platform": "GPL1914", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6336", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "13", "value_type": "log ratio", "reference_series": "GSE3635", "order": "ordered", "update_date": "Sep 27 2006", "subsets": [ { "dataset_id": "GDS2347", "description": "0 m", "sample_id": [ "GSM81064" ], "type": "time", "id": "GDS2347_1" }, { "dataset_id": "GDS2347", "description": "10 m", "sample_id": [ "GSM81065" ], "type": "time", "id": "GDS2347_2" }, { "dataset_id": "GDS2347", "description": "20 m", "sample_id": [ "GSM81066" ], "type": "time", "id": "GDS2347_3" }, { "dataset_id": "GDS2347", "description": "30 m", "sample_id": [ "GSM81067" ], "type": "time", "id": "GDS2347_4" }, { "dataset_id": "GDS2347", "description": "40 m", "sample_id": [ "GSM81068" ], "type": "time", "id": "GDS2347_5" }, { "dataset_id": "GDS2347", "description": "50 m", "sample_id": [ "GSM81069" ], "type": "time", "id": "GDS2347_6" }, { "dataset_id": "GDS2347", "description": "60 m", "sample_id": [ "GSM81070" ], "type": "time", "id": "GDS2347_7" }, { "dataset_id": "GDS2347", "description": "70 m", "sample_id": [ "GSM81071" ], "type": "time", "id": "GDS2347_8" }, { "dataset_id": "GDS2347", "description": "80 m", "sample_id": [ "GSM81072" ], "type": "time", "id": "GDS2347_9" }, { "dataset_id": "GDS2347", "description": "90 m", "sample_id": [ "GSM81073" ], "type": "time", "id": "GDS2347_10" }, { "dataset_id": "GDS2347", "description": "100 m", "sample_id": [ "GSM81074" ], "type": "time", "id": "GDS2347_11" }, { "dataset_id": "GDS2347", "description": "110 m", "sample_id": [ "GSM81075" ], "type": "time", "id": "GDS2347_12" }, { "dataset_id": "GDS2347", "description": "120 m", "sample_id": [ "GSM81076" ], "type": "time", "id": "GDS2347_13" } ], "taxid": "4932", "genes": 6264, "aggregation_function": "mean", "name": "GDS2347", "version": 1.0, "instances": "13", "variables": 6266, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2347.tab", "compression": "gz" } ], [ [ "GDS2350.tab" ], { "title": "Wild type strain across two cell cycles (II)", "description": "Analysis of wild type W303a cells across two cell cycles, a length of 2 hours after synchronization with alpha factor. Gene expression examined at 5-minute intervals.", "type": "Expression profiling by array", "pubmed_id": "16912276", "platform": "GPL1914", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6336", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "50", "value_type": "log ratio", "reference_series": "GSE4987", "order": "ordered", "update_date": "Mar 29 2007", "subsets": [ { "dataset_id": "GDS2350", "description": "0 m", "sample_id": [ "GSM112133", "GSM112158" ], "type": "time", "id": "GDS2350_1" }, { "dataset_id": "GDS2350", "description": "5 m", "sample_id": [ "GSM112134", "GSM112159" ], "type": "time", "id": "GDS2350_2" }, { "dataset_id": "GDS2350", "description": "10 m", "sample_id": [ "GSM112135", "GSM112160" ], "type": "time", "id": "GDS2350_3" }, { "dataset_id": "GDS2350", "description": "15 m", "sample_id": [ "GSM112136", "GSM112161" ], "type": "time", "id": "GDS2350_4" }, { "dataset_id": "GDS2350", "description": "20 m", "sample_id": [ "GSM112137", "GSM112162" ], "type": "time", "id": "GDS2350_5" }, { "dataset_id": "GDS2350", "description": "25 m", "sample_id": [ "GSM112138", "GSM112163" ], "type": "time", "id": "GDS2350_6" }, { "dataset_id": "GDS2350", "description": "30 m", "sample_id": [ "GSM112139", "GSM112164" ], "type": "time", "id": "GDS2350_7" }, { "dataset_id": "GDS2350", "description": "35 m", "sample_id": [ "GSM112140", "GSM112165" ], "type": "time", "id": "GDS2350_8" }, { "dataset_id": "GDS2350", "description": "40 m", "sample_id": [ "GSM112141", "GSM112166" ], "type": "time", "id": "GDS2350_9" }, { "dataset_id": "GDS2350", "description": "45 m", "sample_id": [ "GSM112142", "GSM112167" ], "type": "time", "id": "GDS2350_10" }, { "dataset_id": "GDS2350", "description": "50 m", "sample_id": [ "GSM112143", "GSM112168" ], "type": "time", "id": "GDS2350_11" }, { "dataset_id": "GDS2350", "description": "55 m", "sample_id": [ "GSM112144", "GSM112169" ], "type": "time", "id": "GDS2350_12" }, { "dataset_id": "GDS2350", "description": "60 m", "sample_id": [ "GSM112145", "GSM112170" ], "type": "time", "id": "GDS2350_13" }, { "dataset_id": "GDS2350", "description": "65 m", "sample_id": [ "GSM112146", "GSM112171" ], "type": "time", "id": "GDS2350_14" }, { "dataset_id": "GDS2350", "description": "70 m", "sample_id": [ "GSM112147", "GSM112172" ], "type": "time", "id": "GDS2350_15" }, { "dataset_id": "GDS2350", "description": "75 m", "sample_id": [ "GSM112148", "GSM112173" ], "type": "time", "id": "GDS2350_16" }, { "dataset_id": "GDS2350", "description": "80 m", "sample_id": [ "GSM112149", "GSM112174" ], "type": "time", "id": "GDS2350_17" }, { "dataset_id": "GDS2350", "description": "85 m", "sample_id": [ "GSM112150", "GSM112175" ], "type": "time", "id": "GDS2350_18" }, { "dataset_id": "GDS2350", "description": "90 m", "sample_id": [ "GSM112151", "GSM112176" ], "type": "time", "id": "GDS2350_19" }, { "dataset_id": "GDS2350", "description": "95 m", "sample_id": [ "GSM112152", "GSM112177" ], "type": "time", "id": "GDS2350_20" }, { "dataset_id": "GDS2350", "description": "100 m", "sample_id": [ "GSM112153", "GSM112178" ], "type": "time", "id": "GDS2350_21" }, { "dataset_id": "GDS2350", "description": "105 m", "sample_id": [ "GSM112154", "GSM112179" ], "type": "time", "id": "GDS2350_22" }, { "dataset_id": "GDS2350", "description": "110 m", "sample_id": [ "GSM112155", "GSM112180" ], "type": "time", "id": "GDS2350_23" }, { "dataset_id": "GDS2350", "description": "115 m", "sample_id": [ "GSM112156", "GSM112181" ], "type": "time", "id": "GDS2350_24" }, { "dataset_id": "GDS2350", "description": "120 m", "sample_id": [ "GSM112157", "GSM112182" ], "type": "time", "id": "GDS2350_25" } ], "taxid": "4932", "genes": 6264, "aggregation_function": "mean", "name": "GDS2350", "version": 1.0, "instances": "50", "variables": 6266, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2350.tab", "compression": "gz" } ], [ [ "GDS2352.tab" ], { "title": "T cell receptor-independent basal signaling in unstimulated Jurkat T cells", "description": "Analysis of resting Jurkat T cells and derived mutants lacking T cell receptor (TCR) signaling proteins. Even without TCR engagement, the signaling pathways normally responsive to TCR are not inert. Results provide insight into the transcriptional consequences of the constitutive signaling pathway.", "type": "Expression profiling by array", "pubmed_id": "14624253", "platform": "GPL3084", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37632", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "21", "value_type": "log2 ratio", "reference_series": "GSE3922", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2352", "description": "Jurkat T cell", "sample_id": [ "GSM89759", "GSM89760", "GSM89762", "GSM89764", "GSM89765", "GSM89767" ], "type": "cell line", "id": "GDS2352_1" }, { "dataset_id": "GDS2352", "description": "J14 (SLP-76 negative)", "sample_id": [ "GSM89753", "GSM89755", "GSM89771" ], "type": "cell line", "id": "GDS2352_2" }, { "dataset_id": "GDS2352", "description": "J45 (CD45 negative)", "sample_id": [ "GSM89756", "GSM89757", "GSM89758" ], "type": "cell line", "id": "GDS2352_3" }, { "dataset_id": "GDS2352", "description": "JCAM1 (Lck negative)", "sample_id": [ "GSM89761", "GSM89763", "GSM89773" ], "type": "cell line", "id": "GDS2352_4" }, { "dataset_id": "GDS2352", "description": "JCAM2 (LAT negative)", "sample_id": [ "GSM89766", "GSM89768", "GSM89770" ], "type": "cell line", "id": "GDS2352_5" }, { "dataset_id": "GDS2352", "description": "P116 (ZAP70 negative)", "sample_id": [ "GSM89754", "GSM89769", "GSM89772" ], "type": "cell line", "id": "GDS2352_6" }, { "dataset_id": "GDS2352", "description": "wild type", "sample_id": [ "GSM89759", "GSM89760", "GSM89762", "GSM89764", "GSM89765", "GSM89767" ], "type": "genotype/variation", "id": "GDS2352_7" }, { "dataset_id": "GDS2352", "description": "mutant", "sample_id": [ "GSM89753", "GSM89754", "GSM89755", "GSM89756", "GSM89757", "GSM89758", "GSM89761", "GSM89763", "GSM89766", "GSM89768", "GSM89769", "GSM89770", "GSM89771", "GSM89772", "GSM89773" ], "type": "genotype/variation", "id": "GDS2352_8" }, { "dataset_id": "GDS2352", "description": "unstimulated", "sample_id": [ "GSM89753", "GSM89754", "GSM89755", "GSM89756", "GSM89757", "GSM89758", "GSM89761", "GSM89762", "GSM89763", "GSM89765", "GSM89766", "GSM89767", "GSM89768", "GSM89769", "GSM89770", "GSM89771", "GSM89772", "GSM89773" ], "type": "protocol", "id": "GDS2352_9" }, { "dataset_id": "GDS2352", "description": "mock-stimulated", "sample_id": [ "GSM89759", "GSM89764", "GSM89760" ], "type": "protocol", "id": "GDS2352_10" } ], "taxid": "9606", "genes": 27664, "aggregation_function": "mean", "name": "GDS2352", "version": 1.0, "instances": "21", "variables": 27668, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2352.tab", "compression": "gz" } ], [ [ "GDS2354.tab" ], { "title": "Mushroom body ablation effect on the brain", "description": "Analysis of brains of adult Canton S females following mushroom body (MB) ablation with hydroxyurea. MBs are the centers for higher-order functions in arthropod brains. Results provide insight into the molecular mechanisms controlling the development of MBs.", "type": "Expression profiling by array", "pubmed_id": "16971484", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3379", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2354", "description": "control", "sample_id": [ "GSM76229", "GSM76230", "GSM76231" ], "type": "protocol", "id": "GDS2354_1" }, { "dataset_id": "GDS2354", "description": "MB ablation", "sample_id": [ "GSM76232", "GSM76233", "GSM76234" ], "type": "protocol", "id": "GDS2354_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2354", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2354.tab", "compression": "gz" } ], [ [ "GDS2355.tab" ], { "title": "Ecdysone treatment and gamma-irradiation effect", "description": "Analysis of Kc167 cells following gamma-irradiation, ecdysone treatment, or both. Pretreatment of Kc167 cells with ecdysone increases the sensitivity of these cells to gamma-irradiation.", "type": "Expression profiling by array", "pubmed_id": "17310982", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3072", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2355", "description": "control", "sample_id": [ "GSM67489" ], "type": "agent", "id": "GDS2355_1" }, { "dataset_id": "GDS2355", "description": "ecdysone", "sample_id": [ "GSM67490" ], "type": "agent", "id": "GDS2355_2" }, { "dataset_id": "GDS2355", "description": "radiation", "sample_id": [ "GSM67491" ], "type": "agent", "id": "GDS2355_3" }, { "dataset_id": "GDS2355", "description": "ecdysone and radiation", "sample_id": [ "GSM67492" ], "type": "agent", "id": "GDS2355_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2355", "version": 1.0, "instances": "4", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2355.tab", "compression": "gz" } ], [ [ "GDS2356.tab" ], { "title": "Hair follicles from males and females", "description": "Analysis of unstaged hair follicles from males and females. Results provide insight into the feasibility of extracting intact RNA, from a small number of hair follicles, in sufficient quantities for expression profiling.", "type": "Expression profiling by array", "pubmed_id": "16682506", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3058", "order": "none", "update_date": "Sep 29 2006", "subsets": [ { "dataset_id": "GDS2356", "description": "male", "sample_id": [ "GSM67118", "GSM67120", "GSM67123" ], "type": "gender", "id": "GDS2356_1" }, { "dataset_id": "GDS2356", "description": "female", "sample_id": [ "GSM67124", "GSM67126", "GSM67129", "GSM67131", "GSM67132", "GSM67134", "GSM67138" ], "type": "gender", "id": "GDS2356_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2356", "version": 1.0, "instances": "10", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2356.tab", "compression": "gz" } ], [ [ "GDS2358.tab" ], { "title": "DJ-1 knockdown effect on lung carcinoma cell line", "description": "Analysis of non-small-cell lung carcinoma H157 cells following DJ-1 siRNA knockdown. DJ-1, a cancer- and Parkinson's disease-associated protein, protects cells from toxic stresses.", "type": "Expression profiling by array", "pubmed_id": "17015834", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE5519", "order": "none", "update_date": "Apr 18 2007", "subsets": [ { "dataset_id": "GDS2358", "description": "mock control", "sample_id": [ "GSM128643" ], "type": "protocol", "id": "GDS2358_1" }, { "dataset_id": "GDS2358", "description": "scrambled control", "sample_id": [ "GSM128644", "GSM128645" ], "type": "protocol", "id": "GDS2358_2" }, { "dataset_id": "GDS2358", "description": "DJ-1 knockdown", "sample_id": [ "GSM128646", "GSM128647" ], "type": "protocol", "id": "GDS2358_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2358", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2358.tab", "compression": "gz" } ], [ [ "GDS2359.tab" ], { "title": "Interferon regulatory factor 6 null mutation effect on the skin", "description": "Analysis of skins of interferon regulatory factor 6 (IRF6) null mutants at embryonic day 17.5. Genetic variations in IRF6 are associated with cleft lip and palate in humans. Results provide insight into the role of IRF6 in epidermal development.", "type": "Expression profiling by array", "pubmed_id": "17041601", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5800", "order": "none", "update_date": "Apr 18 2007", "subsets": [ { "dataset_id": "GDS2359", "description": "wild type", "sample_id": [ "GSM135473", "GSM135474", "GSM135475" ], "type": "genotype/variation", "id": "GDS2359_1" }, { "dataset_id": "GDS2359", "description": "Irf6 null", "sample_id": [ "GSM135470", "GSM135471", "GSM135472" ], "type": "genotype/variation", "id": "GDS2359_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2359", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2359.tab", "compression": "gz" } ], [ [ "GDS236.tab" ], { "title": "Dystrophin-deficient mdx muscle regeneration", "description": "Examination of mdx mouse, Duchenne muscular dystrophy model. 16 week regenerating mdx muscle analyzed in search for salvage pathways that maintain skeletal muscle integrity in the absence of functional dystrophin protein.", "type": "Expression profiling by array", "pubmed_id": "12133862", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE466", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS236", "description": "wild type", "sample_id": [ "GSM4372", "GSM4373", "GSM4374", "GSM4375", "GSM4376" ], "type": "strain", "id": "GDS236_1" }, { "dataset_id": "GDS236", "description": "mdx", "sample_id": [ "GSM4377", "GSM4378", "GSM4379", "GSM4380", "GSM4381" ], "type": "strain", "id": "GDS236_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS236", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS236.tab", "compression": "gz" } ], [ [ "GDS2360.tab" ], { "title": "Mammary gland development", "description": "Analysis of whole mammary glands (no.4 inguinal) of C57BL/6J animals during puberty, pregnancy, lactation, and involution. Mammary glands examined during puberty were obtained from virgins.", "type": "Expression profiling by array", "pubmed_id": "17584498", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5831", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2360", "description": "puberty", "sample_id": [ "GSM135895", "GSM135896", "GSM135897" ], "type": "development stage", "id": "GDS2360_1" }, { "dataset_id": "GDS2360", "description": "pregnancy", "sample_id": [ "GSM135898", "GSM135899" ], "type": "development stage", "id": "GDS2360_2" }, { "dataset_id": "GDS2360", "description": "lactation", "sample_id": [ "GSM135900", "GSM135901" ], "type": "development stage", "id": "GDS2360_3" }, { "dataset_id": "GDS2360", "description": "involution", "sample_id": [ "GSM135902", "GSM136112" ], "type": "development stage", "id": "GDS2360_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2360", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2360.tab", "compression": "gz" } ], [ [ "GDS2361.tab" ], { "title": "Intrauterine growth restriction model: kidneys", "description": "Analysis of kidneys of intrauterine growth-restricted (IUGR) fetuses. Intrauterine growth restriction induced by hyperinsulinemia in pregnant animals. IUGR newborns are prone to adult hypertension. Results provide insight into the basis of the renal abnormalities exhibited by IUGR offsprings.", "type": "Expression profiling by array", "pubmed_id": "16923994", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3215", "order": "none", "update_date": "Oct 02 2006", "subsets": [ { "dataset_id": "GDS2361", "description": "control", "sample_id": [ "GSM71252", "GSM72264", "GSM72265", "GSM72266", "GSM72267" ], "type": "protocol", "id": "GDS2361_1" }, { "dataset_id": "GDS2361", "description": "intrauterine growth restricted", "sample_id": [ "GSM72268", "GSM72269", "GSM72270", "GSM72271", "GSM72273" ], "type": "protocol", "id": "GDS2361_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2361", "version": 1.0, "instances": "10", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2361.tab", "compression": "gz" } ], [ [ "GDS2362.tab" ], { "title": "Presymptomatic and symptomatic malaria: peripheral blood mononuclear cells", "description": "Comparison of peripheral blood mononuclear cells of subjects with early, presymptomatic, experimentally acquired malaria to those with acute, uncomplicated, naturally acquired malaria. Results provide insight into the immune response to malaria in these two stages of infection.", "type": "Expression profiling by array", "pubmed_id": "16988231", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "71", "value_type": "count", "reference_series": "GSE5418", "order": "none", "update_date": "Apr 19 2007", "subsets": [ { "dataset_id": "GDS2362", "description": "uninfected", "sample_id": [ "GSM123732", "GSM123736", "GSM123740", "GSM123744", "GSM123746", "GSM123750", "GSM123752", "GSM123756", "GSM123758", "GSM123761", "GSM123763", "GSM123765", "GSM123769", "GSM123771", "GSM123774", "GSM123778", "GSM123780", "GSM123784", "GSM123787", "GSM123791", "GSM123795", "GSM123799" ], "type": "disease state", "id": "GDS2362_1" }, { "dataset_id": "GDS2362", "description": "presymptomatic, experimentally acquired", "sample_id": [ "GSM123730", "GSM123734", "GSM123738", "GSM123742", "GSM123745", "GSM123748", "GSM123751", "GSM123754", "GSM123757", "GSM123760", "GSM123762", "GSM123764", "GSM123767", "GSM123770", "GSM123773", "GSM123777", "GSM123779", "GSM123782", "GSM123786", "GSM123789", "GSM123793", "GSM123797" ], "type": "disease state", "id": "GDS2362_2" }, { "dataset_id": "GDS2362", "description": "symptomatic, naturally acquired", "sample_id": [ "GSM123729", "GSM123733", "GSM123737", "GSM123741", "GSM123747", "GSM123753", "GSM123759", "GSM123766", "GSM123772", "GSM123775", "GSM123781", "GSM123785", "GSM123788", "GSM123792", "GSM123796", "GSM123731", "GSM123735", "GSM123739", "GSM123743", "GSM123749", "GSM123755", "GSM123768", "GSM123776", "GSM123783", "GSM123790", "GSM123794", "GSM123798" ], "type": "disease state", "id": "GDS2362_3" }, { "dataset_id": "GDS2362", "description": "uninfected baseline", "sample_id": [ "GSM123732", "GSM123736", "GSM123740", "GSM123744", "GSM123746", "GSM123750", "GSM123752", "GSM123756", "GSM123758", "GSM123761", "GSM123763", "GSM123765", "GSM123769", "GSM123771", "GSM123774", "GSM123778", "GSM123780", "GSM123784", "GSM123787", "GSM123791", "GSM123795", "GSM123799" ], "type": "infection", "id": "GDS2362_4" }, { "dataset_id": "GDS2362", "description": "infection", "sample_id": [ "GSM123730", "GSM123734", "GSM123738", "GSM123742", "GSM123745", "GSM123748", "GSM123751", "GSM123754", "GSM123757", "GSM123760", "GSM123762", "GSM123764", "GSM123767", "GSM123770", "GSM123773", "GSM123777", "GSM123779", "GSM123782", "GSM123786", "GSM123789", "GSM123793", "GSM123797" ], "type": "infection", "id": "GDS2362_5" }, { "dataset_id": "GDS2362", "description": "acute infection", "sample_id": [ "GSM123729", "GSM123733", "GSM123737", "GSM123741", "GSM123747", "GSM123753", "GSM123759", "GSM123766", "GSM123772", "GSM123775", "GSM123781", "GSM123785", "GSM123788", "GSM123792", "GSM123796", "GSM123731", "GSM123735", "GSM123739", "GSM123743", "GSM123749", "GSM123755", "GSM123768", "GSM123776", "GSM123783", "GSM123790", "GSM123794", "GSM123798" ], "type": "infection", "id": "GDS2362_6" }, { "dataset_id": "GDS2362", "description": "untreated", "sample_id": [ "GSM123732", "GSM123736", "GSM123740", "GSM123744", "GSM123746", "GSM123750", "GSM123752", "GSM123756", "GSM123758", "GSM123761", "GSM123763", "GSM123765", "GSM123769", "GSM123771", "GSM123774", "GSM123778", "GSM123780", "GSM123784", "GSM123787", "GSM123791", "GSM123795", "GSM123799", "GSM123730", "GSM123734", "GSM123738", "GSM123742", "GSM123745", "GSM123748", "GSM123751", "GSM123754", "GSM123757", "GSM123760", "GSM123762", "GSM123764", "GSM123767", "GSM123770", "GSM123773", "GSM123777", "GSM123779", "GSM123782", "GSM123786", "GSM123789", "GSM123793", "GSM123797", "GSM123729", "GSM123733", "GSM123737", "GSM123741", "GSM123747", "GSM123753", "GSM123759", "GSM123766", "GSM123772", "GSM123775", "GSM123781", "GSM123785", "GSM123788", "GSM123792", "GSM123796" ], "type": "agent", "id": "GDS2362_7" }, { "dataset_id": "GDS2362", "description": "chloroguine treated", "sample_id": [ "GSM123731", "GSM123735", "GSM123739", "GSM123743", "GSM123749", "GSM123755", "GSM123768", "GSM123776", "GSM123783", "GSM123790", "GSM123794", "GSM123798" ], "type": "agent", "id": "GDS2362_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2362", "version": 1.0, "instances": "71", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2362.tab", "compression": "gz" } ], [ [ "GDS2363.tab" ], { "title": "Thiol-disulfide status effect on the leaf", "description": "Analysis of leaves treated with dithiothreitol (DTT) for 1 hour. DTT is a sulfhydryl reagent that serves as a nonphysiological redox donor and substrate for thioredoxins. Results provide insight into the contribution of changes in transcripts levels to the regulation of metabolism by thioredoxin.", "type": "Expression profiling by array", "pubmed_id": "16648214", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4021", "order": "none", "update_date": "Oct 13 2006", "subsets": [ { "dataset_id": "GDS2363", "description": "control", "sample_id": [ "GSM91989", "GSM91991" ], "type": "agent", "id": "GDS2363_1" }, { "dataset_id": "GDS2363", "description": "DTT", "sample_id": [ "GSM91990", "GSM91992" ], "type": "agent", "id": "GDS2363_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2363", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2363.tab", "compression": "gz" } ], [ [ "GDS2364.tab" ], { "title": "Anaerobic to aerobic transition: time course", "description": "Analysis of anaerobic steady-state cultures at various time points up to 1 hour following perturbation by introduction of air. Results provide insight into the molecular dynamics underlying the adaptation to aerobic growth.", "type": "Expression profiling by array", "pubmed_id": "16857675", "platform": "GPL534", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4608", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4735", "order": "ordered", "update_date": "Oct 02 2006", "subsets": [ { "dataset_id": "GDS2364", "description": "5 min", "sample_id": [ "GSM106991" ], "type": "time", "id": "GDS2364_1" }, { "dataset_id": "GDS2364", "description": "10 min", "sample_id": [ "GSM107053" ], "type": "time", "id": "GDS2364_2" }, { "dataset_id": "GDS2364", "description": "15 min", "sample_id": [ "GSM107054" ], "type": "time", "id": "GDS2364_3" }, { "dataset_id": "GDS2364", "description": "60 min", "sample_id": [ "GSM107055" ], "type": "time", "id": "GDS2364_4" } ], "taxid": "562", "genes": 4237, "aggregation_function": "mean", "name": "GDS2364", "version": 1.0, "instances": "4", "variables": 4239, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2364.tab", "compression": "gz" } ], [ [ "GDS2366.tab" ], { "title": "Preadipocytes from anatomically separate fat depots (HG-U133A)", "description": "Analysis of undifferentiated and differentiated preadipocytes from abdominal subcutaneous, mesenteric, and greater omental regions. Separate fat depots differ in size, function, and contribution to pathological states. Results provide insight into the contribution of preadipocytes to this variation.", "type": "Expression profiling by array", "pubmed_id": "16985259", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1657", "order": "none", "update_date": "Oct 02 2006", "subsets": [ { "dataset_id": "GDS2366", "description": "subcutaneous", "sample_id": [ "GSM28475", "GSM28476", "GSM28477", "GSM28484", "GSM28485", "GSM28486", "GSM28493", "GSM28494", "GSM28495" ], "type": "tissue", "id": "GDS2366_1" }, { "dataset_id": "GDS2366", "description": "mesenteric", "sample_id": [ "GSM28478", "GSM28479", "GSM28480", "GSM28487", "GSM28488", "GSM28489" ], "type": "tissue", "id": "GDS2366_2" }, { "dataset_id": "GDS2366", "description": "omental", "sample_id": [ "GSM28481", "GSM28482", "GSM28483", "GSM28490", "GSM28491", "GSM28492", "GSM28496", "GSM28497", "GSM28498" ], "type": "tissue", "id": "GDS2366_3" }, { "dataset_id": "GDS2366", "description": "undifferentiated", "sample_id": [ "GSM28475", "GSM28476", "GSM28477", "GSM28478", "GSM28479", "GSM28480", "GSM28481", "GSM28482", "GSM28483" ], "type": "development stage", "id": "GDS2366_4" }, { "dataset_id": "GDS2366", "description": "differentiated", "sample_id": [ "GSM28484", "GSM28485", "GSM28486", "GSM28487", "GSM28488", "GSM28489", "GSM28490", "GSM28491", "GSM28492" ], "type": "development stage", "id": "GDS2366_5" }, { "dataset_id": "GDS2366", "description": "hTERT expressing", "sample_id": [ "GSM28493", "GSM28494", "GSM28495", "GSM28496", "GSM28497", "GSM28498" ], "type": "development stage", "id": "GDS2366_6" }, { "dataset_id": "GDS2366", "description": "primary culture", "sample_id": [ "GSM28475", "GSM28476", "GSM28477", "GSM28478", "GSM28479", "GSM28480", "GSM28481", "GSM28482", "GSM28483", "GSM28484", "GSM28485", "GSM28486", "GSM28487", "GSM28488", "GSM28489", "GSM28490", "GSM28491", "GSM28492" ], "type": "cell line", "id": "GDS2366_7" }, { "dataset_id": "GDS2366", "description": "transduced", "sample_id": [ "GSM28493", "GSM28494", "GSM28495", "GSM28496", "GSM28497", "GSM28498" ], "type": "cell line", "id": "GDS2366_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2366", "version": 1.0, "instances": "24", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2366.tab", "compression": "gz" } ], [ [ "GDS2367.tab" ], { "title": "Tamoxifen effect on breast cancer cell line expressing estrogen receptor alpha and beta", "description": "Analysis of estrogen receptor alpha (ERalpha)-positive MCF-7 breast cancer (BC) cells infected with adenovirus-ERbeta and treated with tamoxifen (Tam). Tam is a selective ER modulator used in BC prevention and treatment. Results provide insight into Tam activity in the presence of both ERs.", "type": "Expression profiling by array", "pubmed_id": "16849584", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE4025", "order": "none", "update_date": "Oct 25 2006", "subsets": [ { "dataset_id": "GDS2367", "description": "vehicle", "sample_id": [ "GSM92147", "GSM92148", "GSM92155", "GSM92156", "GSM92157" ], "type": "agent", "id": "GDS2367_1" }, { "dataset_id": "GDS2367", "description": "estradiol", "sample_id": [ "GSM92149", "GSM92150", "GSM92151", "GSM92158", "GSM92159", "GSM92160" ], "type": "agent", "id": "GDS2367_2" }, { "dataset_id": "GDS2367", "description": "tamoxifen", "sample_id": [ "GSM92152", "GSM92153", "GSM92154", "GSM92161", "GSM92162", "GSM92163" ], "type": "agent", "id": "GDS2367_3" }, { "dataset_id": "GDS2367", "description": "control adenovirus", "sample_id": [ "GSM92147", "GSM92148", "GSM92149", "GSM92150", "GSM92151", "GSM92152", "GSM92153", "GSM92154" ], "type": "infection", "id": "GDS2367_4" }, { "dataset_id": "GDS2367", "description": "adenovirus carrying estrogen receptor beta", "sample_id": [ "GSM92155", "GSM92156", "GSM92157", "GSM92158", "GSM92159", "GSM92160", "GSM92161", "GSM92162", "GSM92163" ], "type": "infection", "id": "GDS2367_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2367", "version": 1.0, "instances": "17", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2367.tab", "compression": "gz" } ], [ [ "GDS2368.tab" ], { "title": "Preadipocytes from anatomically separate fat depots (HG-U133B)", "description": "Analysis of undifferentiated and differentiated preadipocytes from abdominal subcutaneous, mesenteric, and greater omental regions. Separate fat depots differ in size, function, and contribution to pathological states. Results provide insight into the contribution of preadipocytes to this variation.", "type": "Expression profiling by array", "pubmed_id": "16985259", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1657", "order": "none", "update_date": "Oct 02 2006", "subsets": [ { "dataset_id": "GDS2368", "description": "subcutaneous", "sample_id": [ "GSM30645", "GSM30646", "GSM30647", "GSM30654", "GSM30655", "GSM30656" ], "type": "tissue", "id": "GDS2368_1" }, { "dataset_id": "GDS2368", "description": "mesenteric", "sample_id": [ "GSM30648", "GSM30649", "GSM30650", "GSM30657", "GSM30658", "GSM30659" ], "type": "tissue", "id": "GDS2368_2" }, { "dataset_id": "GDS2368", "description": "omental", "sample_id": [ "GSM30651", "GSM30652", "GSM30653", "GSM30660", "GSM30661", "GSM30662" ], "type": "tissue", "id": "GDS2368_3" }, { "dataset_id": "GDS2368", "description": "undifferentiated", "sample_id": [ "GSM30645", "GSM30646", "GSM30647", "GSM30648", "GSM30649", "GSM30650", "GSM30651", "GSM30652", "GSM30653" ], "type": "development stage", "id": "GDS2368_4" }, { "dataset_id": "GDS2368", "description": "differentiated", "sample_id": [ "GSM30654", "GSM30655", "GSM30656", "GSM30657", "GSM30658", "GSM30659", "GSM30660", "GSM30661", "GSM30662" ], "type": "development stage", "id": "GDS2368_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2368", "version": 1.0, "instances": "18", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2368.tab", "compression": "gz" } ], [ [ "GDS2371.tab" ], { "title": "Dominant negative thyroid hormone receptor expression and PPARalpha activation effect on the heart", "description": "Analysis of hearts of dominant negative thyroid hormone receptor (TR) transgenics after treatment with the peroxisome proliferators activated receptor alpha (PPARalpha) agonist WY14643. Results provide insight into the crosstalk between TR and PPARalpha in the heart.", "type": "Expression profiling by array", "pubmed_id": "16985257", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE3067", "order": "none", "update_date": "Oct 03 2006", "subsets": [ { "dataset_id": "GDS2371", "description": "wild type", "sample_id": [ "GSM67362", "GSM67363", "GSM67364", "GSM67365", "GSM67366", "GSM67367", "GSM67368", "GSM67376", "GSM67377", "GSM67378", "GSM67379", "GSM67380", "GSM67381", "GSM67382" ], "type": "strain", "id": "GDS2371_1" }, { "dataset_id": "GDS2371", "description": "DN TR transgenic", "sample_id": [ "GSM67383", "GSM67384", "GSM67385", "GSM67386", "GSM67387", "GSM67388", "GSM67389", "GSM67369", "GSM67370", "GSM67371", "GSM67372", "GSM67373", "GSM67374", "GSM67375" ], "type": "strain", "id": "GDS2371_2" }, { "dataset_id": "GDS2371", "description": "untreated", "sample_id": [ "GSM67362", "GSM67363", "GSM67364", "GSM67365", "GSM67366", "GSM67367", "GSM67368", "GSM67369", "GSM67370", "GSM67371", "GSM67372", "GSM67373", "GSM67374", "GSM67375" ], "type": "agent", "id": "GDS2371_3" }, { "dataset_id": "GDS2371", "description": "PPARalpha agonist", "sample_id": [ "GSM67376", "GSM67377", "GSM67378", "GSM67379", "GSM67380", "GSM67381", "GSM67382", "GSM67383", "GSM67384", "GSM67385", "GSM67386", "GSM67387", "GSM67388", "GSM67389" ], "type": "agent", "id": "GDS2371_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2371", "version": 1.0, "instances": "28", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2371.tab", "compression": "gz" } ], [ [ "GDS2372.tab" ], { "title": "Sulfur dioxide-induced airways disease model: lungs", "description": "Analysis of lungs of spontaneously hypertensive (SH) animals after exposure to 350 ppm sulfur dioxide 5 hours per day for 4 days. Results provide insight into the molecular and genetic basis of the greater susceptibility of SH animals to sulfur dioxide-induced airways disease.", "type": "Expression profiling by array", "pubmed_id": "16929007", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4702", "order": "none", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2372", "description": "control", "sample_id": [ "GSM106233", "GSM106234", "GSM106235", "GSM106236", "GSM106238", "GSM106239", "GSM106247", "GSM106248" ], "type": "agent", "id": "GDS2372_1" }, { "dataset_id": "GDS2372", "description": "sulfur dioxide", "sample_id": [ "GSM106237", "GSM106240", "GSM106241", "GSM106242", "GSM106243", "GSM106244", "GSM106245", "GSM106246" ], "type": "agent", "id": "GDS2372_2" }, { "dataset_id": "GDS2372", "description": "Sprague Dawley", "sample_id": [ "GSM106238", "GSM106239", "GSM106240", "GSM106241", "GSM106242", "GSM106243", "GSM106247", "GSM106248" ], "type": "strain", "id": "GDS2372_3" }, { "dataset_id": "GDS2372", "description": "Spontaneously Hypertensive", "sample_id": [ "GSM106233", "GSM106234", "GSM106235", "GSM106236", "GSM106237", "GSM106244", "GSM106245", "GSM106246" ], "type": "strain", "id": "GDS2372_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2372", "version": 1.0, "instances": "16", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2372.tab", "compression": "gz" } ], [ [ "GDS2373.tab" ], { "title": "Squamous cell lung carcinomas", "description": "Analysis of primary squamous cell lung carcinomas (SCCs) from 129 patients. SCCs and adenocarcinomas compose the majority of non small cell lung cancers. Gene expression profiles were compared to clinical outcome.", "type": "Expression profiling by array", "pubmed_id": "16885343", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "130", "value_type": "count", "reference_series": "GSE4573", "order": "none", "update_date": "Oct 03 2006", "subsets": [ { "dataset_id": "GDS2373", "description": "male", "sample_id": [ "GSM102114", "GSM102116", "GSM102117", "GSM102118", "GSM102120", "GSM102123", "GSM102124", "GSM102125", "GSM102127", "GSM102130", "GSM102131", "GSM102132", "GSM102133", "GSM102134", "GSM102135", "GSM102136", "GSM102139", "GSM102140", "GSM102141", "GSM102142", "GSM102143", "GSM102144", "GSM102145", "GSM102149", "GSM102150", "GSM102151", "GSM102152", "GSM102153", "GSM102154", "GSM102156", "GSM102160", "GSM102161", "GSM102162", "GSM102165", "GSM102166", "GSM102170", "GSM102171", "GSM102172", "GSM102175", "GSM102177", "GSM102178", "GSM102179", "GSM102180", "GSM102181", "GSM102184", "GSM102187", "GSM102188", "GSM102189", "GSM102191", "GSM102193", "GSM102194", "GSM102196", "GSM102197", "GSM102198", "GSM102199", "GSM102200", "GSM102202", "GSM102203", "GSM102204", "GSM102205", "GSM102208", "GSM102209", "GSM102210", "GSM102212", "GSM102213", "GSM102215", "GSM102220", "GSM102221", "GSM102222", "GSM102223", "GSM102225", "GSM102227", "GSM102229", "GSM102230", "GSM102232", "GSM102233", "GSM102235", "GSM102236", "GSM102238", "GSM102240", "GSM102242", "GSM102243" ], "type": "gender", "id": "GDS2373_1" }, { "dataset_id": "GDS2373", "description": "female", "sample_id": [ "GSM102115", "GSM102119", "GSM102121", "GSM102122", "GSM102126", "GSM102128", "GSM102129", "GSM102137", "GSM102138", "GSM102146", "GSM102147", "GSM102148", "GSM102155", "GSM102157", "GSM102158", "GSM102159", "GSM102163", "GSM102164", "GSM102167", "GSM102168", "GSM102169", "GSM102173", "GSM102174", "GSM102176", "GSM102182", "GSM102183", "GSM102185", "GSM102186", "GSM102190", "GSM102192", "GSM102195", "GSM102201", "GSM102206", "GSM102207", "GSM102211", "GSM102214", "GSM102216", "GSM102217", "GSM102218", "GSM102219", "GSM102224", "GSM102226", "GSM102228", "GSM102231", "GSM102234", "GSM102237", "GSM102239", "GSM102241" ], "type": "gender", "id": "GDS2373_2" }, { "dataset_id": "GDS2373", "description": "stage Ia", "sample_id": [ "GSM102123", "GSM102125", "GSM102126", "GSM102131", "GSM102132", "GSM102134", "GSM102136", "GSM102137", "GSM102153", "GSM102155", "GSM102159", "GSM102171", "GSM102175", "GSM102178", "GSM102191", "GSM102197", "GSM102198", "GSM102202", "GSM102212", "GSM102217", "GSM102220", "GSM102221", "GSM102223", "GSM102229", "GSM102234", "GSM102237", "GSM102240" ], "type": "disease state", "id": "GDS2373_3" }, { "dataset_id": "GDS2373", "description": "stage Ib", "sample_id": [ "GSM102117", "GSM102124", "GSM102128", "GSM102129", "GSM102133", "GSM102135", "GSM102139", "GSM102142", "GSM102145", "GSM102151", "GSM102157", "GSM102163", "GSM102164", "GSM102165", "GSM102166", "GSM102167", "GSM102168", "GSM102172", "GSM102174", "GSM102179", "GSM102180", "GSM102181", "GSM102182", "GSM102183", "GSM102184", "GSM102185", "GSM102190", "GSM102192", "GSM102193", "GSM102195", "GSM102196", "GSM102199", "GSM102200", "GSM102201", "GSM102203", "GSM102204", "GSM102206", "GSM102213", "GSM102214", "GSM102218", "GSM102224", "GSM102225", "GSM102226", "GSM102230", "GSM102235", "GSM102243" ], "type": "disease state", "id": "GDS2373_4" }, { "dataset_id": "GDS2373", "description": "stage IIa", "sample_id": [ "GSM102152", "GSM102154", "GSM102158", "GSM102162", "GSM102169", "GSM102187" ], "type": "disease state", "id": "GDS2373_5" }, { "dataset_id": "GDS2373", "description": "stage IIb", "sample_id": [ "GSM102114", "GSM102116", "GSM102118", "GSM102140", "GSM102141", "GSM102143", "GSM102144", "GSM102146", "GSM102147", "GSM102148", "GSM102150", "GSM102156", "GSM102160", "GSM102161", "GSM102170", "GSM102176", "GSM102177", "GSM102205", "GSM102209", "GSM102210", "GSM102211", "GSM102216", "GSM102219", "GSM102227", "GSM102231", "GSM102238", "GSM102241", "GSM102242" ], "type": "disease state", "id": "GDS2373_6" }, { "dataset_id": "GDS2373", "description": "stage IIIa", "sample_id": [ "GSM102115", "GSM102119", "GSM102120", "GSM102122", "GSM102127", "GSM102138", "GSM102149", "GSM102173", "GSM102186", "GSM102194", "GSM102207", "GSM102208", "GSM102215", "GSM102222", "GSM102228", "GSM102232", "GSM102236" ], "type": "disease state", "id": "GDS2373_7" }, { "dataset_id": "GDS2373", "description": "stage IIIb", "sample_id": [ "GSM102121", "GSM102130", "GSM102188", "GSM102189", "GSM102233", "GSM102239" ], "type": "disease state", "id": "GDS2373_8" }, { "dataset_id": "GDS2373", "description": "less than 1 y survival", "sample_id": [ "GSM102115", "GSM102116", "GSM102117", "GSM102120", "GSM102124", "GSM102127", "GSM102130", "GSM102149", "GSM102150", "GSM102154", "GSM102157", "GSM102158", "GSM102163", "GSM102172", "GSM102173", "GSM102182", "GSM102188", "GSM102191", "GSM102199", "GSM102203", "GSM102213", "GSM102216", "GSM102219", "GSM102227", "GSM102231", "GSM102232", "GSM102234", "GSM102239", "GSM102240" ], "type": "other", "id": "GDS2373_9" }, { "dataset_id": "GDS2373", "description": "at least 1 y, less than 2 y survival", "sample_id": [ "GSM102114", "GSM102138", "GSM102147", "GSM102165", "GSM102167", "GSM102169", "GSM102175", "GSM102177", "GSM102180", "GSM102184", "GSM102206", "GSM102222", "GSM102224", "GSM102225", "GSM102230", "GSM102237" ], "type": "other", "id": "GDS2373_10" }, { "dataset_id": "GDS2373", "description": "at least 2 y, less than 3 y survival", "sample_id": [ "GSM102133", "GSM102134", "GSM102152", "GSM102159", "GSM102160", "GSM102161", "GSM102162", "GSM102164", "GSM102166", "GSM102170", "GSM102171", "GSM102174", "GSM102176", "GSM102178", "GSM102198", "GSM102205", "GSM102214", "GSM102221", "GSM102223", "GSM102226", "GSM102228", "GSM102229", "GSM102235", "GSM102236" ], "type": "other", "id": "GDS2373_11" }, { "dataset_id": "GDS2373", "description": "at least 3 y, less than 4 y survival", "sample_id": [ "GSM102118", "GSM102153", "GSM102155", "GSM102156", "GSM102195", "GSM102196", "GSM102218", "GSM102220", "GSM102233", "GSM102238", "GSM102243" ], "type": "other", "id": "GDS2373_12" }, { "dataset_id": "GDS2373", "description": "at least 4 y, less than 5 y survival", "sample_id": [ "GSM102128", "GSM102135", "GSM102137", "GSM102139", "GSM102143", "GSM102148", "GSM102151", "GSM102168", "GSM102202", "GSM102215", "GSM102217" ], "type": "other", "id": "GDS2373_13" }, { "dataset_id": "GDS2373", "description": "at least 5 y, less than 6 y survival", "sample_id": [ "GSM102123", "GSM102125", "GSM102136", "GSM102144", "GSM102190", "GSM102193", "GSM102194", "GSM102197", "GSM102200", "GSM102201", "GSM102204", "GSM102209" ], "type": "other", "id": "GDS2373_14" }, { "dataset_id": "GDS2373", "description": "at least 6 y, less than 7 y survival", "sample_id": [ "GSM102131", "GSM102132", "GSM102145", "GSM102146", "GSM102212", "GSM102241" ], "type": "other", "id": "GDS2373_15" }, { "dataset_id": "GDS2373", "description": "at least 7 y, less than 8 y survival", "sample_id": [ "GSM102129", "GSM102192", "GSM102207", "GSM102210" ], "type": "other", "id": "GDS2373_16" }, { "dataset_id": "GDS2373", "description": "at least 8 y, less than 9 y survival", "sample_id": [ "GSM102121", "GSM102122", "GSM102140" ], "type": "other", "id": "GDS2373_17" }, { "dataset_id": "GDS2373", "description": "at least 9 y, less than 10 y survival", "sample_id": [ "GSM102183", "GSM102185", "GSM102189", "GSM102208", "GSM102242" ], "type": "other", "id": "GDS2373_18" }, { "dataset_id": "GDS2373", "description": "at least 10 y, less than 11 y survival", "sample_id": [ "GSM102119", "GSM102126", "GSM102142", "GSM102186", "GSM102187", "GSM102211" ], "type": "other", "id": "GDS2373_19" }, { "dataset_id": "GDS2373", "description": "at least 11 y, less than 12 y survival", "sample_id": [ "GSM102141", "GSM102179", "GSM102181" ], "type": "other", "id": "GDS2373_20" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2373", "version": 1.0, "instances": "130", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2373.tab", "compression": "gz" } ], [ [ "GDS2374.tab" ], { "title": "Glucose-dependent insulinotropic peptide-dependent adrenal hyperplasia", "description": "Analysis of hyperplastic adrenal glands from patients with glucose-dependent insulinotropic peptide (GIP)-dependent Cushing's Syndrome (CS) or ACTH-dependent CS. Results provide insight into the molecular basis of the ectopic adrenal expression of GIPR in GIP-dependent CS.", "type": "Expression profiling by array", "pubmed_id": "16772347", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE4060", "order": "none", "update_date": "Oct 25 2006", "subsets": [ { "dataset_id": "GDS2374", "description": "control", "sample_id": [ "GSM85117" ], "type": "disease state", "id": "GDS2374_1" }, { "dataset_id": "GDS2374", "description": "GIP-dependent Cushing's syndrome", "sample_id": [ "GSM86165", "GSM86166", "GSM86167", "GSM86168", "GSM86169" ], "type": "disease state", "id": "GDS2374_2" }, { "dataset_id": "GDS2374", "description": "ACTH-dependent Cushing's syndrome", "sample_id": [ "GSM86434", "GSM88074", "GSM93152", "GSM93153", "GSM93154" ], "type": "disease state", "id": "GDS2374_3" }, { "dataset_id": "GDS2374", "description": "GIP-dependent nodule", "sample_id": [ "GSM93155", "GSM93156" ], "type": "disease state", "id": "GDS2374_4" }, { "dataset_id": "GDS2374", "description": "GIP-dependent adenoma", "sample_id": [ "GSM93157" ], "type": "disease state", "id": "GDS2374_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2374", "version": 1.0, "instances": "14", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2374.tab", "compression": "gz" } ], [ [ "GDS2378.tab" ], { "title": "UTP and alpha-chemokine CXCL12 effect on CD34+ hematopoietic stem cells", "description": "Analysis of CD34+ hematopoietic stem cells (HSCs) treated with UTP, alpha-chemokine CXCL12, or both. CXCL12 is a HSC chemoattractant secreted by the bone marrow. Results provide insight into the molecular mechanisms underlying the enhancement of CXCL12-dependent HSC migration by UTP.", "type": "Expression profiling by array", "pubmed_id": "17008551", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5168", "order": "none", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2378", "description": "untreated", "sample_id": [ "GSM116403" ], "type": "agent", "id": "GDS2378_1" }, { "dataset_id": "GDS2378", "description": "UTP", "sample_id": [ "GSM116404" ], "type": "agent", "id": "GDS2378_2" }, { "dataset_id": "GDS2378", "description": "CXCL12", "sample_id": [ "GSM116405" ], "type": "agent", "id": "GDS2378_3" }, { "dataset_id": "GDS2378", "description": "UTP and CXCL12", "sample_id": [ "GSM116407" ], "type": "agent", "id": "GDS2378_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2378", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2378.tab", "compression": "gz" } ], [ [ "GDS2379.tab" ], { "title": "Oligodendrocyte progenitor and oligodendrocyte comparison (RAE230A)", "description": "Analysis of FACS-purified A2B5+ oligodendrocyte progenitors and O4+ oligodendrocytes from the brains of postnatal day 7 Sprague Dawley males. Results provide insight into the mechanisms underlying oligodendrocyte maturation.", "type": "Expression profiling by array", "pubmed_id": "17005852", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE5940", "order": "ordered", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2379", "description": "oligodendrocyte progenitor", "sample_id": [ "GSM138218", "GSM138219", "GSM138220", "GSM138221", "GSM138222" ], "type": "development stage", "id": "GDS2379_1" }, { "dataset_id": "GDS2379", "description": "oligodendrocyte", "sample_id": [ "GSM138223", "GSM138224", "GSM138225", "GSM138229" ], "type": "development stage", "id": "GDS2379_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2379", "version": 1.0, "instances": "9", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2379.tab", "compression": "gz" } ], [ [ "GDS238.tab" ], { "title": "Skin tumors and vitamin A supplements", "description": "Analysis of gene expression in skin of rats subjected to electron irradiation and the effect of dietary vitamin A supplements.", "type": "Expression profiling by array", "pubmed_id": "12793764", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE284", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS238", "description": "control", "sample_id": [ "GSM3900", "GSM3904", "GSM3905" ], "type": "protocol", "id": "GDS238_1" }, { "dataset_id": "GDS238", "description": "irradiated", "sample_id": [ "GSM3901", "GSM3906", "GSM3899" ], "type": "protocol", "id": "GDS238_2" }, { "dataset_id": "GDS238", "description": "vitamin A", "sample_id": [ "GSM3902", "GSM3907" ], "type": "protocol", "id": "GDS238_3" }, { "dataset_id": "GDS238", "description": "irradiated and vitamin A", "sample_id": [ "GSM3908", "GSM3903" ], "type": "protocol", "id": "GDS238_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS238", "version": 1.0, "instances": "10", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS238.tab", "compression": "gz" } ], [ [ "GDS2380.tab" ], { "title": "Oligodendrocyte progenitor and oligodendrocyte comparison (RAE230B)", "description": "Analysis of FACS-purified A2B5+ oligodendrocyte progenitors and O4+ oligodendrocytes from the brains of postnatal day 7 Sprague Dawley males. Results provide insight into the mechanisms underlying oligodendrocyte maturation.", "type": "Expression profiling by array", "pubmed_id": "17005852", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE5940", "order": "ordered", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2380", "description": "oligodendrocyte progenitor", "sample_id": [ "GSM138280", "GSM138281", "GSM138282", "GSM138283", "GSM138284" ], "type": "development stage", "id": "GDS2380_1" }, { "dataset_id": "GDS2380", "description": "oligodendrocyte", "sample_id": [ "GSM138285", "GSM138286", "GSM138287", "GSM138288" ], "type": "development stage", "id": "GDS2380_2" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS2380", "version": 1.0, "instances": "9", "variables": 13320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2380.tab", "compression": "gz" } ], [ [ "GDS2381.tab" ], { "title": "Atopic dermatitis (HG-U133A)", "description": "Analysis of lesional and non-lesional skin biopsy specimens from adult patients with atopic dermatitis (AD). Results provide insight into the molecular changes associated with early AD inflammation.", "type": "Expression profiling by array", "pubmed_id": [ "17181634", "20625511" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE5667", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2381", "description": "normal", "sample_id": [ "GSM132623", "GSM132624", "GSM132625", "GSM132626", "GSM132627" ], "type": "disease state", "id": "GDS2381_1" }, { "dataset_id": "GDS2381", "description": "atopic dermatitis", "sample_id": [ "GSM132628", "GSM132629", "GSM132630", "GSM132631", "GSM132632", "GSM132633", "GSM132634", "GSM132635", "GSM132636", "GSM132637", "GSM132638", "GSM132639" ], "type": "disease state", "id": "GDS2381_2" }, { "dataset_id": "GDS2381", "description": "control", "sample_id": [ "GSM132623", "GSM132624", "GSM132625", "GSM132626", "GSM132627" ], "type": "development stage", "id": "GDS2381_3" }, { "dataset_id": "GDS2381", "description": "non-lesional", "sample_id": [ "GSM132628", "GSM132629", "GSM132630", "GSM132631", "GSM132632", "GSM132633" ], "type": "development stage", "id": "GDS2381_4" }, { "dataset_id": "GDS2381", "description": "lesional", "sample_id": [ "GSM132634", "GSM132635", "GSM132636", "GSM132637", "GSM132638", "GSM132639" ], "type": "development stage", "id": "GDS2381_5" }, { "dataset_id": "GDS2381", "description": "healthy 1", "sample_id": [ "GSM132623" ], "type": "individual", "id": "GDS2381_6" }, { "dataset_id": "GDS2381", "description": "healthy 2", "sample_id": [ "GSM132624" ], "type": "individual", "id": "GDS2381_7" }, { "dataset_id": "GDS2381", "description": "healthy 3", "sample_id": [ "GSM132625" ], "type": "individual", "id": "GDS2381_8" }, { "dataset_id": "GDS2381", "description": "healthy 4", "sample_id": [ "GSM132626" ], "type": "individual", "id": "GDS2381_9" }, { "dataset_id": "GDS2381", "description": "healthy 5", "sample_id": [ "GSM132627" ], "type": "individual", "id": "GDS2381_10" }, { "dataset_id": "GDS2381", "description": "patient 1", "sample_id": [ "GSM132628", "GSM132634" ], "type": "individual", "id": "GDS2381_11" }, { "dataset_id": "GDS2381", "description": "patient 2", "sample_id": [ "GSM132629", "GSM132635" ], "type": "individual", "id": "GDS2381_12" }, { "dataset_id": "GDS2381", "description": "patient 3", "sample_id": [ "GSM132630", "GSM132636" ], "type": "individual", "id": "GDS2381_13" }, { "dataset_id": "GDS2381", "description": "patient 4", "sample_id": [ "GSM132631", "GSM132637" ], "type": "individual", "id": "GDS2381_14" }, { "dataset_id": "GDS2381", "description": "patient 5", "sample_id": [ "GSM132632", "GSM132638" ], "type": "individual", "id": "GDS2381_15" }, { "dataset_id": "GDS2381", "description": "patient 6", "sample_id": [ "GSM132633", "GSM132639" ], "type": "individual", "id": "GDS2381_16" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2381", "version": 1.0, "instances": "17", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2381.tab", "compression": "gz" } ], [ [ "GDS2382.tab" ], { "title": "Atopic dermatitis (HG-U133B)", "description": "Analysis of lesional and non-lesional skin biopsy specimens from adult patients with atopic dermatitis (AD). Results provide insight into the molecular changes associated with early AD inflammation.", "type": "Expression profiling by array", "pubmed_id": [ "17181634", "20625511" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE5667", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2382", "description": "normal", "sample_id": [ "GSM132640", "GSM132641", "GSM132642", "GSM132643", "GSM132644" ], "type": "disease state", "id": "GDS2382_1" }, { "dataset_id": "GDS2382", "description": "atopic dermatitis", "sample_id": [ "GSM132645", "GSM132646", "GSM132647", "GSM132648", "GSM132649", "GSM132650", "GSM132651", "GSM132652", "GSM132653", "GSM132654", "GSM132655", "GSM132656" ], "type": "disease state", "id": "GDS2382_2" }, { "dataset_id": "GDS2382", "description": "control", "sample_id": [ "GSM132640", "GSM132641", "GSM132642", "GSM132643", "GSM132644" ], "type": "development stage", "id": "GDS2382_3" }, { "dataset_id": "GDS2382", "description": "non-lesional", "sample_id": [ "GSM132645", "GSM132646", "GSM132647", "GSM132648", "GSM132649", "GSM132650" ], "type": "development stage", "id": "GDS2382_4" }, { "dataset_id": "GDS2382", "description": "lesional", "sample_id": [ "GSM132651", "GSM132652", "GSM132653", "GSM132654", "GSM132655", "GSM132656" ], "type": "development stage", "id": "GDS2382_5" }, { "dataset_id": "GDS2382", "description": "healthy 1", "sample_id": [ "GSM132640" ], "type": "individual", "id": "GDS2382_6" }, { "dataset_id": "GDS2382", "description": "healthy 2", "sample_id": [ "GSM132641" ], "type": "individual", "id": "GDS2382_7" }, { "dataset_id": "GDS2382", "description": "healthy 3", "sample_id": [ "GSM132642" ], "type": "individual", "id": "GDS2382_8" }, { "dataset_id": "GDS2382", "description": "healthy 4", "sample_id": [ "GSM132643" ], "type": "individual", "id": "GDS2382_9" }, { "dataset_id": "GDS2382", "description": "healthy 5", "sample_id": [ "GSM132644" ], "type": "individual", "id": "GDS2382_10" }, { "dataset_id": "GDS2382", "description": "patient 1", "sample_id": [ "GSM132645", "GSM132651" ], "type": "individual", "id": "GDS2382_11" }, { "dataset_id": "GDS2382", "description": "patient 2", "sample_id": [ "GSM132646", "GSM132652" ], "type": "individual", "id": "GDS2382_12" }, { "dataset_id": "GDS2382", "description": "patient 3", "sample_id": [ "GSM132647", "GSM132653" ], "type": "individual", "id": "GDS2382_13" }, { "dataset_id": "GDS2382", "description": "patient 4", "sample_id": [ "GSM132648", "GSM132654" ], "type": "individual", "id": "GDS2382_14" }, { "dataset_id": "GDS2382", "description": "patient 5", "sample_id": [ "GSM132649", "GSM132655" ], "type": "individual", "id": "GDS2382_15" }, { "dataset_id": "GDS2382", "description": "patient 6", "sample_id": [ "GSM132650", "GSM132656" ], "type": "individual", "id": "GDS2382_16" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2382", "version": 1.0, "instances": "17", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2382.tab", "compression": "gz" } ], [ [ "GDS2383.tab" ], { "title": "2,3,7,8-tetrachlorodibenzo-p-dioxin effect on cultured embryonic teeth", "description": "Analysis of cultured molar teeth from embryonic day 14 fetuses following in vitro treatment with 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), a potent toxic dioxin. Results provide insight into the molecular basis of the retardation of dentin mineralization caused by TCDD.", "type": "Expression profiling by array", "pubmed_id": "17586704", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4873", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2383", "description": "control", "sample_id": [ "GSM109312", "GSM109590" ], "type": "agent", "id": "GDS2383_1" }, { "dataset_id": "GDS2383", "description": "TCDD", "sample_id": [ "GSM109592", "GSM109593" ], "type": "agent", "id": "GDS2383_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2383", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2383.tab", "compression": "gz" } ], [ [ "GDS2385.tab" ], { "title": "Targretin, 9-cis retinoic acid, and 4-hydroxyphenylretinamide effect on various organs", "description": "Analysis of normal livers, lungs, and mammary glands from Sprague Dawleys treated with targretin (TGR), 9-cis retinoic acid (9cRA), or 4-hydroxyphenylretinamide (4HPR). Results provide insight into the molecular basis of the varying chemopreventive anti-cancer effects of these agents.", "type": "Expression profiling by array", "pubmed_id": "16648578", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE3952", "order": "none", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2385", "description": "liver", "sample_id": [ "GSM89841", "GSM89843", "GSM89846", "GSM89849", "GSM89852", "GSM89855", "GSM89858", "GSM89861", "GSM89864", "GSM89867", "GSM89870", "GSM89873", "GSM89875", "GSM89878", "GSM89881" ], "type": "tissue", "id": "GDS2385_1" }, { "dataset_id": "GDS2385", "description": "lung", "sample_id": [ "GSM89842", "GSM89844", "GSM89847", "GSM89850", "GSM89853", "GSM89856", "GSM89859", "GSM89862", "GSM89865", "GSM89868", "GSM89871", "GSM89876", "GSM89879", "GSM90168" ], "type": "tissue", "id": "GDS2385_2" }, { "dataset_id": "GDS2385", "description": "mammary gland", "sample_id": [ "GSM89845", "GSM89848", "GSM89851", "GSM89854", "GSM89857", "GSM89860", "GSM89863", "GSM89866", "GSM89869", "GSM89872", "GSM89874", "GSM89877", "GSM89880", "GSM90169" ], "type": "tissue", "id": "GDS2385_3" }, { "dataset_id": "GDS2385", "description": "control", "sample_id": [ "GSM89873", "GSM89874", "GSM89875", "GSM89876", "GSM89877", "GSM89878", "GSM89879", "GSM89880", "GSM89881", "GSM90168", "GSM90169" ], "type": "agent", "id": "GDS2385_4" }, { "dataset_id": "GDS2385", "description": "4HPR", "sample_id": [ "GSM89841", "GSM89842", "GSM89843", "GSM89844", "GSM89845", "GSM89846", "GSM89847", "GSM89848", "GSM89870", "GSM89871", "GSM89872" ], "type": "agent", "id": "GDS2385_5" }, { "dataset_id": "GDS2385", "description": "9cRA", "sample_id": [ "GSM89858", "GSM89859", "GSM89860", "GSM89861", "GSM89862", "GSM89863", "GSM89864", "GSM89865", "GSM89866", "GSM89867", "GSM89868", "GSM89869" ], "type": "agent", "id": "GDS2385_6" }, { "dataset_id": "GDS2385", "description": "TGR", "sample_id": [ "GSM89849", "GSM89850", "GSM89851", "GSM89852", "GSM89853", "GSM89854", "GSM89855", "GSM89856", "GSM89857" ], "type": "agent", "id": "GDS2385_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2385", "version": 1.0, "instances": "43", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2385.tab", "compression": "gz" } ], [ [ "GDS2386.tab" ], { "title": "Cardiac allograft rejection and response to immunosuppressive therapy: peripheral blood", "description": "Analysis of peripheral blood from cardiac transplant patients with allograft rejection and from the same patients after resolution of rejection with augmented immunosuppression. Results provide insight into potential use of peripheral blood profiling for detection of cardiac allograft rejection.", "type": "Expression profiling by array", "pubmed_id": "15583081", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE5967", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS2386", "description": "rejection", "sample_id": [ "GSM138597", "GSM138598", "GSM138599", "GSM138600", "GSM138601", "GSM138602", "GSM138603" ], "type": "individual", "id": "GDS2386_1" }, { "dataset_id": "GDS2386", "description": "postrejection", "sample_id": [ "GSM138604", "GSM138605", "GSM138606", "GSM138607", "GSM138608", "GSM138609", "GSM138610" ], "type": "individual", "id": "GDS2386_2" }, { "dataset_id": "GDS2386", "description": "control (no rejection)", "sample_id": [ "GSM138611", "GSM138612", "GSM138613", "GSM138614", "GSM138615", "GSM138616", "GSM138617" ], "type": "individual", "id": "GDS2386_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2386", "version": 1.0, "instances": "21", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2386.tab", "compression": "gz" } ], [ [ "GDS2387.tab" ], { "title": "Oocyte and one-cell embryo polysomal mRNA", "description": "Analysis of the polysomal maternal mRNA (MmRNA) populations of oocytes and late one-cell stage embryos. Results provide insight into the mechanisms that regulate the stage-specific translation of MmRNAs in early development.", "type": "Expression profiling by array", "pubmed_id": "16860309", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "mixed", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3962", "order": "ordered", "update_date": "Oct 25 2006", "subsets": [ { "dataset_id": "GDS2387", "description": "oocyte", "sample_id": [ "GSM89969", "GSM89970", "GSM89971", "GSM89972" ], "type": "development stage", "id": "GDS2387_1" }, { "dataset_id": "GDS2387", "description": "1-cell embryo", "sample_id": [ "GSM89973", "GSM89974", "GSM89975", "GSM89999" ], "type": "development stage", "id": "GDS2387_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2387", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2387.tab", "compression": "gz" } ], [ [ "GDS239.tab" ], { "title": "Ozone effect on airways hyperpermeability", "description": "Ozone is an environmental pollutant associated with exacerbation of cardiopulmonary diseases like asthma. HeJ (Tlr4 mutant) and OuJ (wild type) exposed continuously to air or 0.3 ppm of ozone, and lungs examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE476", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS239", "description": "HeJ Tlr4 mutant", "sample_id": [ "GSM4012", "GSM4013", "GSM4014", "GSM4015" ], "type": "strain", "id": "GDS239_1" }, { "dataset_id": "GDS239", "description": "OuJ wild type", "sample_id": [ "GSM4016", "GSM4017", "GSM4018", "GSM4019" ], "type": "strain", "id": "GDS239_2" }, { "dataset_id": "GDS239", "description": "air", "sample_id": [ "GSM4012", "GSM4013", "GSM4016", "GSM4017" ], "type": "agent", "id": "GDS239_3" }, { "dataset_id": "GDS239", "description": "ozone", "sample_id": [ "GSM4014", "GSM4015", "GSM4018", "GSM4019" ], "type": "agent", "id": "GDS239_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS239", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS239.tab", "compression": "gz" } ], [ [ "GDS2390.tab" ], { "title": "Male germ cells", "description": "Analysis of four spermatic subpopulations: type A and type B spermatogonia, pachytene spermatocytes, and round spermatids. The X and Y chromosomes are subject to meiotic sex chromosome inactivation in the mammalian male germline. Results provide insight into the extent of postmeiotic X silencing.", "type": "Expression profiling by array", "pubmed_id": "16581510", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4193", "order": "none", "update_date": "Oct 25 2006", "subsets": [ { "dataset_id": "GDS2390", "description": "type A spermatogonia", "sample_id": [ "GSM95928", "GSM95929" ], "type": "cell type", "id": "GDS2390_1" }, { "dataset_id": "GDS2390", "description": "type B spermatogonia", "sample_id": [ "GSM95930", "GSM95947" ], "type": "cell type", "id": "GDS2390_2" }, { "dataset_id": "GDS2390", "description": "pachytene spermatocytes", "sample_id": [ "GSM95948", "GSM95949" ], "type": "cell type", "id": "GDS2390_3" }, { "dataset_id": "GDS2390", "description": "round spermatids", "sample_id": [ "GSM95950", "GSM95951" ], "type": "cell type", "id": "GDS2390_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2390", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2390.tab", "compression": "gz" } ], [ [ "GDS2391.tab" ], { "title": "PGC-1alpha transcriptional coactivator null mutation effect on the brain striatum", "description": "Analysis of brain striatum of PGC-1alpha transcriptional coactivator null mutants. PGC-1alpha regulates several metabolic processes. Altered energy metabolism is implicated in Huntington's disease (HD). Results provide insight into the role of PGC-1alpha in HD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17018277", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5786", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2391", "description": "wild type", "sample_id": [ "GSM135225", "GSM135226", "GSM135227" ], "type": "genotype/variation", "id": "GDS2391_1" }, { "dataset_id": "GDS2391", "description": "PGC-1alpha null", "sample_id": [ "GSM135217", "GSM135219", "GSM135221" ], "type": "genotype/variation", "id": "GDS2391_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2391", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2391.tab", "compression": "gz" } ], [ [ "GDS2395.tab" ], { "title": "Epidermal stem cell and transit-amplifying cell (HG-U133A)", "description": "Analysis of cDNA libraries each generated from a single cultured epidermal stem cell (SC) or transit-amplifying (TA) cell. TA cells are SC progenies that are destined to terminally differentiate. Single cell expression profiling avoids the problem of potentially masking cellular heterogeneity.", "type": "Expression profiling by array", "pubmed_id": "16877544", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4858", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2395", "description": "stem cell", "sample_id": [ "GSM109230", "GSM109235", "GSM109236", "GSM109237", "GSM109238", "GSM109239" ], "type": "cell type", "id": "GDS2395_1" }, { "dataset_id": "GDS2395", "description": "transit-amplifying cell", "sample_id": [ "GSM109228", "GSM109229", "GSM109231", "GSM109232", "GSM109233", "GSM109234" ], "type": "cell type", "id": "GDS2395_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2395", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2395.tab", "compression": "gz" } ], [ [ "GDS2396.tab" ], { "title": "Epidermal stem cell and transit-amplifying cell (HG-U133B)", "description": "Analysis of cDNA libraries each generated from a single cultured epidermal stem cell (SC) or transit-amplifying (TA) cell. TA cells are SC progenies that are destined to terminally differentiate. Single cell expression profiling avoids the problem of potentially masking cellular heterogeneity.", "type": "Expression profiling by array", "pubmed_id": "16877544", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4858", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2396", "description": "stem cell", "sample_id": [ "GSM109242", "GSM109247", "GSM109248", "GSM109249", "GSM109250", "GSM109251" ], "type": "cell type", "id": "GDS2396_1" }, { "dataset_id": "GDS2396", "description": "transit-amplifying cell", "sample_id": [ "GSM109240", "GSM109241", "GSM109243", "GSM109244", "GSM109245", "GSM109246" ], "type": "cell type", "id": "GDS2396_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2396", "version": 1.0, "instances": "12", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2396.tab", "compression": "gz" } ], [ [ "GDS2397.tab" ], { "title": "Idiopathic myelofibrosis: hematopoietic CD34+ stem cells", "description": "Analysis of pooled hematopoietic CD34+ stem cells from peripheral blood of patients with idiopathic myelofibrosis (IM), a rare chronic myeloproliferative disorder. Results provide insight into the molecular pathogenesis of IM.", "type": "Expression profiling by array", "pubmed_id": "16990584", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3410", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2397", "description": "normal", "sample_id": [ "GSM76923", "GSM76924", "GSM76925" ], "type": "disease state", "id": "GDS2397_1" }, { "dataset_id": "GDS2397", "description": "idiopathic myelofibrosis", "sample_id": [ "GSM76926", "GSM76927", "GSM76928" ], "type": "disease state", "id": "GDS2397_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2397", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2397.tab", "compression": "gz" } ], [ [ "GDS2398.tab" ], { "title": "Hematopoietic cells at various stages of differentiation", "description": "Analysis of hematopoietic stem cells (HSCs), progenitor cells (HPCs), and granulocytes. Short-term (ST) and long-term (LT) repopulating HSCs examined. Results provide insight into the basis of the differences observed in cloning efficiency of each cell type in somatic cell nuclear transfer.", "type": "Expression profiling by array", "pubmed_id": "17013394", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5677", "order": "ordered", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2398", "description": "LT-HSC", "sample_id": [ "GSM132914" ], "type": "development stage", "id": "GDS2398_1" }, { "dataset_id": "GDS2398", "description": "ST-HSC", "sample_id": [ "GSM132915" ], "type": "development stage", "id": "GDS2398_2" }, { "dataset_id": "GDS2398", "description": "HPC", "sample_id": [ "GSM132913" ], "type": "development stage", "id": "GDS2398_3" }, { "dataset_id": "GDS2398", "description": "granulocyte", "sample_id": [ "GSM132912" ], "type": "development stage", "id": "GDS2398_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2398", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2398.tab", "compression": "gz" } ], [ [ "GDS2399.tab" ], { "title": "Aggressive behavior and the brain", "description": "Analysis of heads of Canton-S males selected for increased aggressive behavior. Gene expression examined after 21 generations of selection. Results provide insight into the molecular underpinnings of aggressive behavior.", "type": "Expression profiling by array", "pubmed_id": "16906161", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5335", "order": "none", "update_date": "Jun 15 2007", "subsets": [ { "dataset_id": "GDS2399", "description": "reference", "sample_id": [ "GSM120863", "GSM120864", "GSM120865", "GSM120866", "GSM120867", "GSM120868" ], "type": "strain", "id": "GDS2399_1" }, { "dataset_id": "GDS2399", "description": "selected for aggressive behavior", "sample_id": [ "GSM120838", "GSM120858", "GSM120859", "GSM120860", "GSM120861", "GSM120862" ], "type": "strain", "id": "GDS2399_2" }, { "dataset_id": "GDS2399", "description": "population 3", "sample_id": [ "GSM120838", "GSM120858", "GSM120859" ], "type": "other", "id": "GDS2399_3" }, { "dataset_id": "GDS2399", "description": "population 4", "sample_id": [ "GSM120860", "GSM120861", "GSM120862" ], "type": "other", "id": "GDS2399_4" }, { "dataset_id": "GDS2399", "description": "population 1", "sample_id": [ "GSM120863", "GSM120864", "GSM120865" ], "type": "other", "id": "GDS2399_5" }, { "dataset_id": "GDS2399", "description": "population 2", "sample_id": [ "GSM120866", "GSM120867", "GSM120868" ], "type": "other", "id": "GDS2399_6" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2399", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2399.tab", "compression": "gz" } ], [ [ "GDS240.tab" ], { "title": "Alternatively activated macrophages", "description": "Study of IL-4 dependent alternatively activated macrophages (AAM). AAM implicated in pulmonary diseases like allergic asthma and nematode infections. Macrophages extracted from peritoneal cavity of wildtype and mutant (IL4--) mice infected with nematode.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE477", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS240", "description": "IL4++ wild type", "sample_id": [ "GSM4007", "GSM4008" ], "type": "strain", "id": "GDS240_1" }, { "dataset_id": "GDS240", "description": "IL4-- mutant", "sample_id": [ "GSM4009", "GSM4010", "GSM4011" ], "type": "strain", "id": "GDS240_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS240", "version": 1.0, "instances": "5", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS240.tab", "compression": "gz" } ], [ [ "GDS2400.tab" ], { "title": "Anergic T cell", "description": "Analysis of T cells anergized in vitro with plate-bound anti-CD3. Anergy is a hyporesponsive state resulting from the engagement of the T cell receptor in the absence of CD28 costimulation. Results provide insight into the mechanistic basis of T cell anergy.", "type": "Expression profiling by array", "pubmed_id": "17028589", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5960", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2400", "description": "control", "sample_id": [ "GSM138549", "GSM138551" ], "type": "cell type", "id": "GDS2400_1" }, { "dataset_id": "GDS2400", "description": "anergic", "sample_id": [ "GSM138550", "GSM138552" ], "type": "cell type", "id": "GDS2400_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2400", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2400.tab", "compression": "gz" } ], [ [ "GDS2406.tab" ], { "title": "Proto-oncogene Nmyc overexpression effect on the embryonic lung", "description": "Analysis of lungs of embryonic day 18.5 transgenic embryos overexpressing Nmyc in the lung epithelia. Nmyc is a member of a family of proto-oncogenes that encode basic helix-loop-helix-leucine zipper proteins. Results provide insight into the function of Nmyc in the developing lung.", "type": "Expression profiling by array", "pubmed_id": "17486137", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6077", "order": "none", "update_date": "Jun 15 2007", "subsets": [ { "dataset_id": "GDS2406", "description": "wild type", "sample_id": [ "GSM140827", "GSM140863" ], "type": "genotype/variation", "id": "GDS2406_1" }, { "dataset_id": "GDS2406", "description": "Nmyc transgenic", "sample_id": [ "GSM140864", "GSM140865" ], "type": "genotype/variation", "id": "GDS2406_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2406", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2406.tab", "compression": "gz" } ], [ [ "GDS2408.tab" ], { "title": "B cell-activating factor of the TNF family effect on B cells", "description": "Analysis of total and polysomal RNAs from B cells stimulated with B cell-activating factor of the TNF family (BAFF). BAFF promotes B cell survival. Results provide insight into the signaling mechanisms underlying BAFF-mediated B cell survival.", "type": "Expression profiling by array", "pubmed_id": "17060474", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5985", "order": "none", "update_date": "Jun 15 2007", "subsets": [ { "dataset_id": "GDS2408", "description": "untreated", "sample_id": [ "GSM139079", "GSM139087" ], "type": "agent", "id": "GDS2408_1" }, { "dataset_id": "GDS2408", "description": "BAFF", "sample_id": [ "GSM139084", "GSM139091" ], "type": "agent", "id": "GDS2408_2" }, { "dataset_id": "GDS2408", "description": "total", "sample_id": [ "GSM139087", "GSM139091" ], "type": "protocol", "id": "GDS2408_3" }, { "dataset_id": "GDS2408", "description": "polysomal", "sample_id": [ "GSM139079", "GSM139084" ], "type": "protocol", "id": "GDS2408_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2408", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2408.tab", "compression": "gz" } ], [ [ "GDS241.tab" ], { "title": "Alveoli destruction time course", "description": "Temporal study of lung alveoli destruction induced by caloric restriction. Alveoli number and surface area are linked to oxygen consumption, and calorie restriction lowers oxygen consumption.", "type": "Expression profiling by array", "pubmed_id": "14594731", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE478", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS241", "description": "0 hour", "sample_id": [ "GSM4034", "GSM4035", "GSM4036", "GSM4037" ], "type": "time", "id": "GDS241_1" }, { "dataset_id": "GDS241", "description": "2 hour", "sample_id": [ "GSM4024", "GSM4025", "GSM4040", "GSM4041" ], "type": "time", "id": "GDS241_2" }, { "dataset_id": "GDS241", "description": "4 hour", "sample_id": [ "GSM4028", "GSM4029", "GSM4042", "GSM4043" ], "type": "time", "id": "GDS241_3" }, { "dataset_id": "GDS241", "description": "12 hour", "sample_id": [ "GSM4020", "GSM4021", "GSM4038", "GSM4039" ], "type": "time", "id": "GDS241_4" }, { "dataset_id": "GDS241", "description": "24 hour", "sample_id": [ "GSM4022", "GSM4023" ], "type": "time", "id": "GDS241_5" }, { "dataset_id": "GDS241", "description": "48 hour", "sample_id": [ "GSM4026", "GSM4027" ], "type": "time", "id": "GDS241_6" }, { "dataset_id": "GDS241", "description": "72 hour", "sample_id": [ "GSM4030", "GSM4031" ], "type": "time", "id": "GDS241_7" }, { "dataset_id": "GDS241", "description": "96 hour", "sample_id": [ "GSM4032", "GSM4033" ], "type": "time", "id": "GDS241_8" }, { "dataset_id": "GDS241", "description": "control", "sample_id": [ "GSM4034", "GSM4035", "GSM4036", "GSM4037", "GSM4038", "GSM4039", "GSM4040", "GSM4041", "GSM4042", "GSM4043" ], "type": "protocol", "id": "GDS241_9" }, { "dataset_id": "GDS241", "description": "calorie restricted", "sample_id": [ "GSM4020", "GSM4021", "GSM4022", "GSM4023", "GSM4024", "GSM4025", "GSM4026", "GSM4027", "GSM4028", "GSM4029", "GSM4030", "GSM4031", "GSM4032", "GSM4033" ], "type": "protocol", "id": "GDS241_10" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS241", "version": 1.0, "instances": "24", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS241.tab", "compression": "gz" } ], [ [ "GDS2410.tab" ], { "title": "Edema toxin effect on macrophage cell line: time course", "description": "Analysis of RAW 264.7 macrophage cells treated with edema toxin (EdTx) for 3 or 6 hours. EdTx is an adenylyl cyclase enzyme produced by Bacillus anthracis. It converts ATP to cAMP, resulting in interstitial edema in anthrax patients. Results provide insight into the effect of EdTx in the host cell.", "type": "Expression profiling by array", "pubmed_id": "16846716", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4712", "order": "none", "update_date": "Jun 19 2007", "subsets": [ { "dataset_id": "GDS2410", "description": "control", "sample_id": [ "GSM106426", "GSM106427", "GSM106428" ], "type": "time", "id": "GDS2410_1" }, { "dataset_id": "GDS2410", "description": "3 h", "sample_id": [ "GSM106386", "GSM106387", "GSM106388", "GSM106392", "GSM106393", "GSM106394", "GSM106399", "GSM106400", "GSM106402" ], "type": "time", "id": "GDS2410_2" }, { "dataset_id": "GDS2410", "description": "6 h", "sample_id": [ "GSM106389", "GSM106390", "GSM106391", "GSM106395", "GSM106396", "GSM106397", "GSM106403", "GSM106405", "GSM106407" ], "type": "time", "id": "GDS2410_3" }, { "dataset_id": "GDS2410", "description": "untreated", "sample_id": [ "GSM106426", "GSM106427", "GSM106428" ], "type": "agent", "id": "GDS2410_4" }, { "dataset_id": "GDS2410", "description": "LPS", "sample_id": [ "GSM106392", "GSM106393", "GSM106394", "GSM106395", "GSM106396", "GSM106397" ], "type": "agent", "id": "GDS2410_5" }, { "dataset_id": "GDS2410", "description": "protective antigen", "sample_id": [ "GSM106399", "GSM106400", "GSM106402", "GSM106403", "GSM106405", "GSM106407" ], "type": "agent", "id": "GDS2410_6" }, { "dataset_id": "GDS2410", "description": "edema toxin", "sample_id": [ "GSM106386", "GSM106387", "GSM106388", "GSM106389", "GSM106390", "GSM106391" ], "type": "agent", "id": "GDS2410_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2410", "version": 1.0, "instances": "21", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2410.tab", "compression": "gz" } ], [ [ "GDS2411.tab" ], { "title": "Transcription factor PU.1 knockdown effect on hematopoietic stem cells", "description": "Analysis of preleukemic hematopoietic stem cells from animals knocked down for the transcription factor PU.1. PU.1 knockdown leads to acute myeloid leukemia in the animal. Results provide insight into the molecular changes preceding malignant transformation.", "type": "Expression profiling by array", "pubmed_id": "17041602", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5654", "order": "none", "update_date": "Jun 19 2007", "subsets": [ { "dataset_id": "GDS2411", "description": "control", "sample_id": [ "GSM132382", "GSM132383", "GSM132384" ], "type": "protocol", "id": "GDS2411_1" }, { "dataset_id": "GDS2411", "description": "PU.1 knockdown", "sample_id": [ "GSM132385", "GSM132386", "GSM132387" ], "type": "protocol", "id": "GDS2411_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2411", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2411.tab", "compression": "gz" } ], [ [ "GDS2412.tab" ], { "title": "Myotubes differentiated in vitro", "description": "Analysis of C2C12 skeletal myoblasts induced to differentiate into myotubes in vitro. Results provide insight into the role of nuclear envelope transmembrane proteins in myogenesis.", "type": "Expression profiling by array", "pubmed_id": "17062158", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4694", "order": "ordered", "update_date": "Nov 02 2006", "subsets": [ { "dataset_id": "GDS2412", "description": "myoblast", "sample_id": [ "GSM106142", "GSM106143", "GSM106144" ], "type": "development stage", "id": "GDS2412_1" }, { "dataset_id": "GDS2412", "description": "myotube", "sample_id": [ "GSM106145", "GSM106146", "GSM106147" ], "type": "development stage", "id": "GDS2412_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2412", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2412.tab", "compression": "gz" } ], [ [ "GDS2413.tab" ], { "title": "Resveratrol and high-fat high-calorie diet effect on liver", "description": "Analysis of liver of C57BL/6 males maintained on a high-fat high-calorie diet supplemented with 0.04% resveratrol, a compound in red wine that extends lifespan of diverse species. Results provide insight into molecular basis of increased lifespan and improved health associated with resveratrol.", "type": "Expression profiling by array", "pubmed_id": "17086191", "platform": "GPL2872", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "Z-score", "reference_series": "GSE6089", "order": "none", "update_date": "Apr 03 2007", "subsets": [ { "dataset_id": "GDS2413", "description": "control diet", "sample_id": [ "GSM140954", "GSM140955", "GSM140956", "GSM140957", "GSM140958" ], "type": "protocol", "id": "GDS2413_1" }, { "dataset_id": "GDS2413", "description": "high-fat high-calorie diet", "sample_id": [ "GSM140959", "GSM140960", "GSM140961", "GSM140962", "GSM140963" ], "type": "protocol", "id": "GDS2413_2" }, { "dataset_id": "GDS2413", "description": "high-fat high-calorie diet plus resveratrol", "sample_id": [ "GSM140964", "GSM140965", "GSM140966", "GSM140967" ], "type": "protocol", "id": "GDS2413_3" } ], "taxid": "10090", "genes": 28025, "aggregation_function": "mean", "name": "GDS2413", "version": 1.0, "instances": "14", "variables": 28027, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2413.tab", "compression": "gz" } ], [ [ "GDS2414.tab" ], { "title": "Decidual stromal cell response to trophoblast conditioned medium: time course", "description": "Analysis of decidualized endometrial stromal cells at various time points up to 12 hours following treatment with conditioned media from trophoblasts. Results provide insight into the paracrine signaling between the trophoblast and the decidua.", "type": "Expression profiling by array", "pubmed_id": "17021345", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE5809", "order": "none", "update_date": "Nov 06 2006", "subsets": [ { "dataset_id": "GDS2414", "description": "control", "sample_id": [ "GSM136126", "GSM136127", "GSM136128", "GSM136129", "GSM136130", "GSM136131", "GSM136132", "GSM136133", "GSM136134" ], "type": "agent", "id": "GDS2414_1" }, { "dataset_id": "GDS2414", "description": "trophoblast conditioned medium", "sample_id": [ "GSM136135", "GSM136136", "GSM136137", "GSM136138", "GSM136139" ], "type": "agent", "id": "GDS2414_2" }, { "dataset_id": "GDS2414", "description": "0 h", "sample_id": [ "GSM136126", "GSM136127", "GSM136128" ], "type": "time", "id": "GDS2414_3" }, { "dataset_id": "GDS2414", "description": "3 h", "sample_id": [ "GSM136129", "GSM136130", "GSM136131", "GSM136135", "GSM136136", "GSM136137" ], "type": "time", "id": "GDS2414_4" }, { "dataset_id": "GDS2414", "description": "12 h", "sample_id": [ "GSM136132", "GSM136133", "GSM136134", "GSM136138", "GSM136139" ], "type": "time", "id": "GDS2414_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2414", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2414.tab", "compression": "gz" } ], [ [ "GDS2415.tab" ], { "title": "Breast carcinomas and local recurrence", "description": "Analysis of primary breast carcinoma tumors from 50 patients who received breast-conserving therapy (BCT). 19 patients subsequently developed a local recurrence of the carcinoma. 9 recurrent tumors also examined. Compared to mastectomy, BCT is associated with a higher rate of local recurrence.", "type": "Expression profiling by array", "pubmed_id": "17020974", "platform": "GPL3558", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "59", "value_type": "log2 ratio", "reference_series": "GSE4913", "order": "none", "update_date": "Jun 20 2007", "subsets": [ { "dataset_id": "GDS2415", "description": "no tumor recurrence", "sample_id": [ "GSM110395", "GSM110396", "GSM110425", "GSM110427", "GSM110428", "GSM110430", "GSM110431", "GSM110432", "GSM110434", "GSM110435", "GSM110437", "GSM110438", "GSM110397", "GSM110398", "GSM110399", "GSM110400", "GSM110401", "GSM110406", "GSM110407", "GSM110409", "GSM110410", "GSM110413", "GSM110414", "GSM110415", "GSM110416", "GSM110418", "GSM110419", "GSM110420", "GSM110421", "GSM110423", "GSM110424" ], "type": "disease state", "id": "GDS2415_1" }, { "dataset_id": "GDS2415", "description": "tumor recurrence", "sample_id": [ "GSM110388", "GSM110392", "GSM110394", "GSM110402", "GSM110411", "GSM110412", "GSM110417", "GSM110422", "GSM110426", "GSM110429", "GSM110433", "GSM110436", "GSM110440", "GSM110441", "GSM110444", "GSM110445", "GSM110446", "GSM110449", "GSM110451", "GSM110391", "GSM110439", "GSM110442", "GSM110443", "GSM110447", "GSM110448", "GSM110450", "GSM110452", "GSM110453" ], "type": "disease state", "id": "GDS2415_2" }, { "dataset_id": "GDS2415", "description": "primary tumor", "sample_id": [ "GSM110388", "GSM110392", "GSM110394", "GSM110402", "GSM110411", "GSM110412", "GSM110417", "GSM110422", "GSM110426", "GSM110429", "GSM110433", "GSM110436", "GSM110440", "GSM110441", "GSM110444", "GSM110445", "GSM110446", "GSM110449", "GSM110451", "GSM110395", "GSM110396", "GSM110425", "GSM110427", "GSM110428", "GSM110430", "GSM110431", "GSM110432", "GSM110434", "GSM110435", "GSM110437", "GSM110438", "GSM110397", "GSM110398", "GSM110399", "GSM110400", "GSM110401", "GSM110406", "GSM110407", "GSM110409", "GSM110410", "GSM110413", "GSM110414", "GSM110415", "GSM110416", "GSM110418", "GSM110419", "GSM110420", "GSM110421", "GSM110423", "GSM110424" ], "type": "specimen", "id": "GDS2415_3" }, { "dataset_id": "GDS2415", "description": "recurrent tumor", "sample_id": [ "GSM110391", "GSM110439", "GSM110442", "GSM110443", "GSM110447", "GSM110448", "GSM110450", "GSM110452", "GSM110453" ], "type": "specimen", "id": "GDS2415_4" } ], "taxid": "9606", "genes": 16423, "aggregation_function": "mean", "name": "GDS2415", "version": 1.0, "instances": "59", "variables": 16426, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2415.tab", "compression": "gz" } ], [ [ "GDS2416.tab" ], { "title": "Different areas of cervical cancer tumors", "description": "Analysis of 33 biopsies from 11 cervical cancer patients. Biopsies were obtained from 2 to 5 different areas of each tumor. Results provide insight into the extent of intratumor heterogeneity in gene expression in cervical cancer patients.", "type": "Expression profiling by array", "pubmed_id": "17020965", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE5787", "order": "none", "update_date": "Nov 06 2006", "subsets": [ { "dataset_id": "GDS2416", "description": "patient 1", "sample_id": [ "GSM135233", "GSM135260", "GSM135234" ], "type": "individual", "id": "GDS2416_1" }, { "dataset_id": "GDS2416", "description": "patient 4", "sample_id": [ "GSM135235", "GSM135232", "GSM135236" ], "type": "individual", "id": "GDS2416_2" }, { "dataset_id": "GDS2416", "description": "patient 6", "sample_id": [ "GSM135242", "GSM135231", "GSM135252", "GSM135243", "GSM135251" ], "type": "individual", "id": "GDS2416_3" }, { "dataset_id": "GDS2416", "description": "patient 7", "sample_id": [ "GSM135244", "GSM135259" ], "type": "individual", "id": "GDS2416_4" }, { "dataset_id": "GDS2416", "description": "patient 9", "sample_id": [ "GSM135254", "GSM135255", "GSM135261" ], "type": "individual", "id": "GDS2416_5" }, { "dataset_id": "GDS2416", "description": "patient 10", "sample_id": [ "GSM135245", "GSM135230", "GSM135258", "GSM135229", "GSM135246" ], "type": "individual", "id": "GDS2416_6" }, { "dataset_id": "GDS2416", "description": "patient 11", "sample_id": [ "GSM135247", "GSM135250" ], "type": "individual", "id": "GDS2416_7" }, { "dataset_id": "GDS2416", "description": "patient 12", "sample_id": [ "GSM135237", "GSM135238", "GSM135239" ], "type": "individual", "id": "GDS2416_8" }, { "dataset_id": "GDS2416", "description": "patient 13", "sample_id": [ "GSM135257", "GSM135256" ], "type": "individual", "id": "GDS2416_9" }, { "dataset_id": "GDS2416", "description": "patient 15", "sample_id": [ "GSM135240", "GSM135248", "GSM135253" ], "type": "individual", "id": "GDS2416_10" }, { "dataset_id": "GDS2416", "description": "patient 16", "sample_id": [ "GSM135241", "GSM135249" ], "type": "individual", "id": "GDS2416_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2416", "version": 1.0, "instances": "33", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2416.tab", "compression": "gz" } ], [ [ "GDS2417.tab" ], { "title": "Exercise effect on white blood cells", "description": "Analysis of whole white blood cells (WBC), peripheral blood mononuclear cells, and T lymphocytes following exhaustive exercise. Results provide insight into the improvements in reliability and sensitivity attained using WBC subtypes to monitor physiological states.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4251", "order": "none", "update_date": "Jun 20 2007", "subsets": [ { "dataset_id": "GDS2417", "description": "pre-exercise", "sample_id": [ "GSM96902", "GSM96904", "GSM96906", "GSM96908", "GSM96910", "GSM96912", "GSM96914", "GSM96916", "GSM96918" ], "type": "protocol", "id": "GDS2417_1" }, { "dataset_id": "GDS2417", "description": "post-exercise", "sample_id": [ "GSM96901", "GSM96903", "GSM96905", "GSM96907", "GSM96909", "GSM96911", "GSM96913", "GSM96915", "GSM96917" ], "type": "protocol", "id": "GDS2417_2" }, { "dataset_id": "GDS2417", "description": "WBC", "sample_id": [ "GSM96901", "GSM96902", "GSM96903", "GSM96904", "GSM96905", "GSM96906" ], "type": "cell type", "id": "GDS2417_3" }, { "dataset_id": "GDS2417", "description": "PBMC", "sample_id": [ "GSM96907", "GSM96908", "GSM96909", "GSM96910", "GSM96911", "GSM96912" ], "type": "cell type", "id": "GDS2417_4" }, { "dataset_id": "GDS2417", "description": "T lymphocytes", "sample_id": [ "GSM96913", "GSM96914", "GSM96915", "GSM96916", "GSM96917", "GSM96918" ], "type": "cell type", "id": "GDS2417_5" }, { "dataset_id": "GDS2417", "description": "proband A", "sample_id": [ "GSM96901", "GSM96902", "GSM96907", "GSM96908", "GSM96913", "GSM96914" ], "type": "individual", "id": "GDS2417_6" }, { "dataset_id": "GDS2417", "description": "proband B", "sample_id": [ "GSM96903", "GSM96904", "GSM96909", "GSM96910", "GSM96915", "GSM96916" ], "type": "individual", "id": "GDS2417_7" }, { "dataset_id": "GDS2417", "description": "proband C", "sample_id": [ "GSM96905", "GSM96906", "GSM96911", "GSM96912", "GSM96917", "GSM96918" ], "type": "individual", "id": "GDS2417_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2417", "version": 1.0, "instances": "18", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2417.tab", "compression": "gz" } ], [ [ "GDS2418.tab" ], { "title": "Vulvar intraepithelial neoplasia", "description": "Analysis of vulvar intraepithelial neoplasia (VIN) lesions. VIN is a premalignant disorder caused by human papillomaviruses. Results provide insight into the pathogenesis of VIN.", "type": "Expression profiling by array", "pubmed_id": [ "17471573", "21815142" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE5563", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2418", "description": "control", "sample_id": [ "GSM129237", "GSM129241", "GSM129249", "GSM129250", "GSM129251", "GSM129252", "GSM129253", "GSM129254", "GSM129255" ], "type": "disease state", "id": "GDS2418_1" }, { "dataset_id": "GDS2418", "description": "vulvar intraepithelial neoplasia", "sample_id": [ "GSM129238", "GSM129239", "GSM129240", "GSM129242", "GSM129243", "GSM129245", "GSM129246", "GSM129247", "GSM129248" ], "type": "disease state", "id": "GDS2418_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2418", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2418.tab", "compression": "gz" } ], [ [ "GDS2419.tab" ], { "title": "Multiple sclerosis response to interferon beta-1a therapy: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells from relapsing-remitting multiple sclerosis (MS) patients 1 day before, 1 day after, and up to 12 months after the initiation of interferon beta-1a (IFN-beta-1a) therapy. Results identify biomarkers for beta-IFN responsiveness.", "type": "Expression profiling by array", "pubmed_id": "17467740", "platform": "GPL4191", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10458", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE5574", "order": "none", "update_date": "Jun 20 2007", "subsets": [ { "dataset_id": "GDS2419", "description": "normal", "sample_id": [ "GSM129456", "GSM129457" ], "type": "disease state", "id": "GDS2419_1" }, { "dataset_id": "GDS2419", "description": "multiple sclerosis", "sample_id": [ "GSM129422", "GSM129423", "GSM129424", "GSM129425", "GSM129426", "GSM129427", "GSM129428", "GSM129429", "GSM129430", "GSM129431", "GSM129432", "GSM129433", "GSM129434", "GSM129435", "GSM129436", "GSM129437", "GSM129438", "GSM129439", "GSM129440", "GSM129441", "GSM129442", "GSM129443", "GSM129444", "GSM129445", "GSM129446", "GSM129447", "GSM129448", "GSM129449", "GSM129450", "GSM129451", "GSM129452", "GSM129453", "GSM129454", "GSM129455" ], "type": "disease state", "id": "GDS2419_2" }, { "dataset_id": "GDS2419", "description": "baseline", "sample_id": [ "GSM129456", "GSM129457", "GSM129422", "GSM129423", "GSM129428", "GSM129429", "GSM129434", "GSM129435", "GSM129440", "GSM129441", "GSM129446", "GSM129447" ], "type": "agent", "id": "GDS2419_3" }, { "dataset_id": "GDS2419", "description": "IFN beta-1a", "sample_id": [ "GSM129424", "GSM129425", "GSM129426", "GSM129427", "GSM129430", "GSM129431", "GSM129432", "GSM129433", "GSM129436", "GSM129437", "GSM129438", "GSM129439", "GSM129442", "GSM129443", "GSM129444", "GSM129445", "GSM129448", "GSM129449", "GSM129450", "GSM129451", "GSM129454", "GSM129455", "GSM129452", "GSM129453" ], "type": "agent", "id": "GDS2419_4" }, { "dataset_id": "GDS2419", "description": "pre-treatment", "sample_id": [ "GSM129456", "GSM129457", "GSM129422", "GSM129423", "GSM129428", "GSM129429", "GSM129434", "GSM129435", "GSM129440", "GSM129441", "GSM129446", "GSM129447" ], "type": "time", "id": "GDS2419_5" }, { "dataset_id": "GDS2419", "description": "1 d", "sample_id": [ "GSM129424", "GSM129425", "GSM129430", "GSM129431", "GSM129436", "GSM129437", "GSM129442", "GSM129443", "GSM129448", "GSM129449", "GSM129454", "GSM129455" ], "type": "time", "id": "GDS2419_6" }, { "dataset_id": "GDS2419", "description": "1 to 6 m", "sample_id": [ "GSM129426", "GSM129427", "GSM129432", "GSM129433", "GSM129438", "GSM129439", "GSM129444", "GSM129445", "GSM129450", "GSM129451" ], "type": "time", "id": "GDS2419_7" }, { "dataset_id": "GDS2419", "description": "12 m", "sample_id": [ "GSM129452", "GSM129453" ], "type": "time", "id": "GDS2419_8" }, { "dataset_id": "GDS2419", "description": "patient DD", "sample_id": [ "GSM129422", "GSM129423", "GSM129424", "GSM129425", "GSM129426", "GSM129427" ], "type": "individual", "id": "GDS2419_9" }, { "dataset_id": "GDS2419", "description": "patient KF", "sample_id": [ "GSM129428", "GSM129429", "GSM129430", "GSM129431", "GSM129432", "GSM129433" ], "type": "individual", "id": "GDS2419_10" }, { "dataset_id": "GDS2419", "description": "patient MH", "sample_id": [ "GSM129434", "GSM129435", "GSM129436", "GSM129437", "GSM129438", "GSM129439" ], "type": "individual", "id": "GDS2419_11" }, { "dataset_id": "GDS2419", "description": "patient TP", "sample_id": [ "GSM129440", "GSM129441", "GSM129442", "GSM129443", "GSM129444", "GSM129445" ], "type": "individual", "id": "GDS2419_12" }, { "dataset_id": "GDS2419", "description": "patient DT", "sample_id": [ "GSM129446", "GSM129447", "GSM129448", "GSM129449", "GSM129450", "GSM129451", "GSM129452", "GSM129453", "GSM129454", "GSM129455" ], "type": "individual", "id": "GDS2419_13" }, { "dataset_id": "GDS2419", "description": "patient MKS", "sample_id": [ "GSM129456", "GSM129457" ], "type": "individual", "id": "GDS2419_14" } ], "taxid": "9606", "genes": 9542, "aggregation_function": "mean", "name": "GDS2419", "version": 1.0, "instances": "36", "variables": 9547, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2419.tab", "compression": "gz" } ], [ [ "GDS242.tab" ], { "title": "Alveolar septation (U74Av2)", "description": "Study of alveolar septation using the Mg-delta strain of fibrillin-1 deficient mice which display an early defect in alveolar septation, and serve as a model for Marfan syndrome and emphysema.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE479", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS242", "description": "wild type", "sample_id": [ "GSM4045", "GSM4051", "GSM4057", "GSM4063" ], "type": "genotype/variation", "id": "GDS242_1" }, { "dataset_id": "GDS242", "description": "mutant fibrillin-1 deficient", "sample_id": [ "GSM4069", "GSM4075", "GSM4081", "GSM4087" ], "type": "genotype/variation", "id": "GDS242_2" }, { "dataset_id": "GDS242", "description": "postnatal day 1", "sample_id": [ "GSM4045", "GSM4051", "GSM4069", "GSM4075" ], "type": "development stage", "id": "GDS242_3" }, { "dataset_id": "GDS242", "description": "postnatal day 5", "sample_id": [ "GSM4057", "GSM4063", "GSM4081", "GSM4087" ], "type": "development stage", "id": "GDS242_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS242", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS242.tab", "compression": "gz" } ], [ [ "GDS2420.tab" ], { "title": "Myoblast differentiation and p53 family members", "description": "Analysis of mock and deltaNp73alpha-expressing C2C12 myoblasts 6 and 24 hours after shifting the cells to a differentiation medium. DeltaNp73alpha, a p73alpha isoform, functions as a transdominant inhibitor of other p53 family members, interfering with multiple developmental programs.", "type": "Expression profiling by array", "pubmed_id": "17045206", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5447", "order": "none", "update_date": "Jun 20 2007", "subsets": [ { "dataset_id": "GDS2420", "description": "mock", "sample_id": [ "GSM124854", "GSM124866", "GSM124868" ], "type": "cell line", "id": "GDS2420_1" }, { "dataset_id": "GDS2420", "description": "deltaNp73alpha", "sample_id": [ "GSM124864", "GSM124865", "GSM124867" ], "type": "cell line", "id": "GDS2420_2" }, { "dataset_id": "GDS2420", "description": "control", "sample_id": [ "GSM124854", "GSM124864" ], "type": "time", "id": "GDS2420_3" }, { "dataset_id": "GDS2420", "description": "6 h", "sample_id": [ "GSM124865", "GSM124868" ], "type": "time", "id": "GDS2420_4" }, { "dataset_id": "GDS2420", "description": "24 h", "sample_id": [ "GSM124866", "GSM124867" ], "type": "time", "id": "GDS2420_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2420", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2420.tab", "compression": "gz" } ], [ [ "GDS2421.tab" ], { "title": "Fibroblast growth factor 2 effect on embryonic fibroblast: dose response", "description": "Analysis of embryonic fibroblasts after treatment with fibroblast growth factor 2 (FGF2) at 4, 13, and 40 ng/ml for 24 hours. FGF2 promotes the self-renewal of embryonic stem cells (ESCs) . Results provide insight into the molecular mechanisms underlying ESC self-renewal in response to FGF2.", "type": "Expression profiling by array", "pubmed_id": "17038665", "platform": "GPL4055", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46116", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5437", "order": "none", "update_date": "Nov 07 2006", "subsets": [ { "dataset_id": "GDS2421", "description": "control", "sample_id": [ "GSM124773" ], "type": "agent", "id": "GDS2421_1" }, { "dataset_id": "GDS2421", "description": "fibroblast growth factor 2", "sample_id": [ "GSM124774", "GSM124775", "GSM124776" ], "type": "agent", "id": "GDS2421_2" }, { "dataset_id": "GDS2421", "description": "0 ng/ml", "sample_id": [ "GSM124773" ], "type": "dose", "id": "GDS2421_3" }, { "dataset_id": "GDS2421", "description": "4 ng/ml", "sample_id": [ "GSM124774" ], "type": "dose", "id": "GDS2421_4" }, { "dataset_id": "GDS2421", "description": "13 ng/ml", "sample_id": [ "GSM124775" ], "type": "dose", "id": "GDS2421_5" }, { "dataset_id": "GDS2421", "description": "40 ng/ml", "sample_id": [ "GSM124776" ], "type": "dose", "id": "GDS2421_6" } ], "taxid": "10090", "genes": 33729, "aggregation_function": "mean", "name": "GDS2421", "version": 1.0, "instances": "4", "variables": 33732, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2421.tab", "compression": "gz" } ], [ [ "GDS2422.tab" ], { "title": "Fibroblast growth factor 2 restimulation effect on embryonic fibroblast", "description": "Analysis of embryonic fibroblasts starved of fibroblast growth factor 2 (FGF2) for 2 days and subsequently restimulated with FGF2. FGF2 promotes the self-renewal of embryonic stem cells (ESCs) . Results provide insight into the molecular mechanisms underlying ESC self-renewal in response to FGF2.", "type": "Expression profiling by array", "pubmed_id": "17038665", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5415", "order": "none", "update_date": "Jun 21 2007", "subsets": [ { "dataset_id": "GDS2422", "description": "starved", "sample_id": [ "GSM124298", "GSM124300" ], "type": "protocol", "id": "GDS2422_1" }, { "dataset_id": "GDS2422", "description": "starved and restimulated", "sample_id": [ "GSM124299", "GSM124301" ], "type": "protocol", "id": "GDS2422_2" }, { "dataset_id": "GDS2422", "description": "control", "sample_id": [ "GSM124298", "GSM124300" ], "type": "agent", "id": "GDS2422_3" }, { "dataset_id": "GDS2422", "description": "fibroblast growth factor 2", "sample_id": [ "GSM124299", "GSM124301" ], "type": "agent", "id": "GDS2422_4" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS2422", "version": 1.0, "instances": "4", "variables": 22009, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2422.tab", "compression": "gz" } ], [ [ "GDS2423.tab" ], { "title": "Embryonic fibroblast-like differentiated cell", "description": "Analysis of embryonic fibroblast-like (EF) differentiated cells derived from H9 embryonic stem cells. Foreskin fibroblasts, and undifferentiated H9 and embryonic carcinoma cells also examined. Results provide insight into the differences between EF cells and fibroblasts at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "17038665", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5416", "order": "none", "update_date": "Jun 03 2010", "subsets": [ { "dataset_id": "GDS2423", "description": "undifferentiated H9", "sample_id": [ "GSM124302" ], "type": "cell type", "id": "GDS2423_1" }, { "dataset_id": "GDS2423", "description": "embryonic carcinoma", "sample_id": [ "GSM124303" ], "type": "cell type", "id": "GDS2423_2" }, { "dataset_id": "GDS2423", "description": "EF-like", "sample_id": [ "GSM124304" ], "type": "cell type", "id": "GDS2423_3" }, { "dataset_id": "GDS2423", "description": "foreskin fibroblast", "sample_id": [ "GSM124305" ], "type": "cell type", "id": "GDS2423_4" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS2423", "version": 1.0, "instances": "4", "variables": 22008, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2423.tab", "compression": "gz" } ], [ [ "GDS2425.tab" ], { "title": "Heart response to chronic constant hypoxia", "description": "Analysis of hearts of wild type Tuebingen animals subjected to chronic constant hypoxia.", "type": "Expression profiling by array", "pubmed_id": "17828398", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4989", "order": "none", "update_date": "Nov 08 2006", "subsets": [ { "dataset_id": "GDS2425", "description": "normoxia", "sample_id": [ "GSM112798", "GSM112800", "GSM112802", "GSM112803", "GSM112806" ], "type": "stress", "id": "GDS2425_1" }, { "dataset_id": "GDS2425", "description": "hypoxia", "sample_id": [ "GSM112796", "GSM112799", "GSM112801", "GSM112804", "GSM112805" ], "type": "stress", "id": "GDS2425_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2425", "version": 1.0, "instances": "10", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2425.tab", "compression": "gz" } ], [ [ "GDS2426.tab" ], { "title": "Hypertension-related calcium-regulated gene overexpression effect on kidney cell line", "description": "Analysis of HEK293 kidney cells overexpressing the hypertension-related calcium-regulated gene (HCaRG). HCaRG is involved in the control of renal cell proliferation and differentiation. Results provide insight into the role of HCaRG in kidney repair after injury.", "type": "Expression profiling by array", "pubmed_id": "16033922", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4737", "order": "none", "update_date": "Nov 08 2006", "subsets": [ { "dataset_id": "GDS2426", "description": "control", "sample_id": [ "GSM48671", "GSM60864", "GSM60866", "GSM106834" ], "type": "protocol", "id": "GDS2426_1" }, { "dataset_id": "GDS2426", "description": "HCaRG overexpression", "sample_id": [ "GSM48672", "GSM60865", "GSM60867", "GSM106835" ], "type": "protocol", "id": "GDS2426_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2426", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2426.tab", "compression": "gz" } ], [ [ "GDS2427.tab" ], { "title": "Arginine regulon repression and derepression", "description": "Analysis of cells with the arginine (Arg) regulon fully or partially repressed, or derepressed. Genes of the Arg regulon are coordinately repressed by the Arg repressor (ArgR) in response to Arg. Results provide insight into ArgR-mediated repression of arginine biosynthesis and uptake genes.", "type": "Expression profiling by array", "pubmed_id": "17074904", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4724", "order": "none", "update_date": "Nov 08 2006", "subsets": [ { "dataset_id": "GDS2427", "description": "partial repression", "sample_id": [ "GSM106504", "GSM106751", "GSM106752" ], "type": "other", "id": "GDS2427_1" }, { "dataset_id": "GDS2427", "description": "full repression", "sample_id": [ "GSM106753", "GSM106755", "GSM106756" ], "type": "other", "id": "GDS2427_2" }, { "dataset_id": "GDS2427", "description": "derepression", "sample_id": [ "GSM106757", "GSM106758", "GSM106759" ], "type": "other", "id": "GDS2427_3" }, { "dataset_id": "GDS2427", "description": "with arginine", "sample_id": [ "GSM106753", "GSM106755", "GSM106756", "GSM106757", "GSM106758", "GSM106759" ], "type": "growth protocol", "id": "GDS2427_4" }, { "dataset_id": "GDS2427", "description": "without arginine", "sample_id": [ "GSM106504", "GSM106751", "GSM106752" ], "type": "growth protocol", "id": "GDS2427_5" }, { "dataset_id": "GDS2427", "description": "wild-type", "sample_id": [ "GSM106504", "GSM106751", "GSM106752", "GSM106753", "GSM106755", "GSM106756" ], "type": "genotype/variation", "id": "GDS2427_6" }, { "dataset_id": "GDS2427", "description": "arginine repressor mutant", "sample_id": [ "GSM106757", "GSM106758", "GSM106759" ], "type": "genotype/variation", "id": "GDS2427_7" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS2427", "version": 1.0, "instances": "9", "variables": 8807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2427.tab", "compression": "gz" } ], [ [ "GDS2428.tab" ], { "title": "DNA demethylation effect on glioblastoma cultures", "description": "Analysis of short-term cultured glioblastoma cells treated with 5-aza-dC to induce DNA demethylation. Glioblastoma cells derived from 3 independent primary glioblastomas. Results provide insight into the role of epigenetic alterations in glioblastoma gene inactivation.", "type": "Expression profiling by array", "pubmed_id": "16909125", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4717", "order": "none", "update_date": "Nov 08 2006", "subsets": [ { "dataset_id": "GDS2428", "description": "untreated", "sample_id": [ "GSM106497", "GSM106498", "GSM106500", "GSM106501", "GSM106502", "GSM106503" ], "type": "agent", "id": "GDS2428_1" }, { "dataset_id": "GDS2428", "description": "5-aza-dC", "sample_id": [ "GSM106370", "GSM106377", "GSM106398", "GSM106401", "GSM106404", "GSM106406" ], "type": "agent", "id": "GDS2428_2" }, { "dataset_id": "GDS2428", "description": "GLI56", "sample_id": [ "GSM106370", "GSM106377", "GSM106497", "GSM106498" ], "type": "specimen", "id": "GDS2428_3" }, { "dataset_id": "GDS2428", "description": "GLI60", "sample_id": [ "GSM106398", "GSM106401", "GSM106500", "GSM106501" ], "type": "specimen", "id": "GDS2428_4" }, { "dataset_id": "GDS2428", "description": "GLI72", "sample_id": [ "GSM106404", "GSM106406", "GSM106502", "GSM106503" ], "type": "specimen", "id": "GDS2428_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2428", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2428.tab", "compression": "gz" } ], [ [ "GDS2429.tab" ], { "title": "Monocyte differentiation to macrophage and subsequent polarization (HG-U133A)", "description": "Analysis of monocytes (MCs) treated with M-CSF to induce differentiation into macrophages (MPs), and mature MPs treated with either IFN-gamma and LPS or IL-4 to induce polarization to M1 or M2 cells, respectively. Results provide insight into MC to MP differentiation and polarized activation.", "type": "Expression profiling by array", "pubmed_id": [ "17082649", "20530259" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE5099", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2429", "description": "monocyte", "sample_id": [ "GSM115046", "GSM115047", "GSM115048" ], "type": "development stage", "id": "GDS2429_1" }, { "dataset_id": "GDS2429", "description": "monocyte at intermediate differentiation stage", "sample_id": [ "GSM115049", "GSM115050", "GSM115051" ], "type": "development stage", "id": "GDS2429_2" }, { "dataset_id": "GDS2429", "description": "macrophage", "sample_id": [ "GSM115052", "GSM115053", "GSM115054" ], "type": "development stage", "id": "GDS2429_3" }, { "dataset_id": "GDS2429", "description": "M1 macrophage", "sample_id": [ "GSM115055", "GSM115056", "GSM115057" ], "type": "development stage", "id": "GDS2429_4" }, { "dataset_id": "GDS2429", "description": "M2 macrophage", "sample_id": [ "GSM115058", "GSM115059", "GSM115060" ], "type": "development stage", "id": "GDS2429_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2429", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2429.tab", "compression": "gz" } ], [ [ "GDS243.tab" ], { "title": "Alveolar septation (U74Bv2)", "description": "Study of alveolar septation using the Mg-delta strain of fibrillin-1 deficient mice which display an early defect in alveolar septation, and serve as a model for Marfan syndrome and emphysema.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE479", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS243", "description": "wild type", "sample_id": [ "GSM4047", "GSM4053", "GSM4059", "GSM4065" ], "type": "genotype/variation", "id": "GDS243_1" }, { "dataset_id": "GDS243", "description": "mutant fibrillin-1 deficient", "sample_id": [ "GSM4071", "GSM4077", "GSM4083", "GSM4089" ], "type": "genotype/variation", "id": "GDS243_2" }, { "dataset_id": "GDS243", "description": "postnatal day 1", "sample_id": [ "GSM4047", "GSM4053", "GSM4071", "GSM4077" ], "type": "development stage", "id": "GDS243_3" }, { "dataset_id": "GDS243", "description": "postnatal day 5", "sample_id": [ "GSM4059", "GSM4065", "GSM4083", "GSM4089" ], "type": "development stage", "id": "GDS243_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS243", "version": 1.0, "instances": "8", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS243.tab", "compression": "gz" } ], [ [ "GDS2430.tab" ], { "title": "Monocyte differentiation to macrophage and subsequent polarization (HG-U133B)", "description": "Analysis of monocytes (MCs) treated with M-CSF to induce differentiation into macrophages (MPs), and mature MPs treated with either IFN-gamma and LPS or IL-4 to induce polarization to M1 or M2 cells, respectively. Results provide insight into MC to MP differentiation and polarized activation.", "type": "Expression profiling by array", "pubmed_id": [ "17082649", "20530259" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE5099", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2430", "description": "monocyte", "sample_id": [ "GSM115061", "GSM115062", "GSM115063" ], "type": "development stage", "id": "GDS2430_1" }, { "dataset_id": "GDS2430", "description": "monocyte at intermediate differentiation stage", "sample_id": [ "GSM115064", "GSM115065", "GSM115066" ], "type": "development stage", "id": "GDS2430_2" }, { "dataset_id": "GDS2430", "description": "macrophage", "sample_id": [ "GSM115067", "GSM115068", "GSM115069" ], "type": "development stage", "id": "GDS2430_3" }, { "dataset_id": "GDS2430", "description": "M1 macrophage", "sample_id": [ "GSM115070", "GSM115071", "GSM115072" ], "type": "development stage", "id": "GDS2430_4" }, { "dataset_id": "GDS2430", "description": "M2 macrophage", "sample_id": [ "GSM115073", "GSM115074", "GSM115075" ], "type": "development stage", "id": "GDS2430_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2430", "version": 1.0, "instances": "15", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2430.tab", "compression": "gz" } ], [ [ "GDS2431.tab" ], { "title": "Erythroid differentiation in vitro: time course", "description": "Analysis of adult differentiating CD34+ hematopoietic progenitor cells at various time points up to 11 days of growth in serum-free medium containing erythropoietin, interleukin-3 and stem cell factor. Results provide insight into the molecular basis of erythropoiesis.", "type": "Expression profiling by array", "pubmed_id": "16940433", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4655", "order": "ordered", "update_date": "Nov 13 2006", "subsets": [ { "dataset_id": "GDS2431", "description": "1 d", "sample_id": [ "GSM102744", "GSM102746", "GSM102747" ], "type": "time", "id": "GDS2431_1" }, { "dataset_id": "GDS2431", "description": "3 d", "sample_id": [ "GSM102748", "GSM102749", "GSM104060" ], "type": "time", "id": "GDS2431_2" }, { "dataset_id": "GDS2431", "description": "5 d", "sample_id": [ "GSM102753", "GSM102755", "GSM104051" ], "type": "time", "id": "GDS2431_3" }, { "dataset_id": "GDS2431", "description": "7 d", "sample_id": [ "GSM102756", "GSM102757", "GSM102758" ], "type": "time", "id": "GDS2431_4" }, { "dataset_id": "GDS2431", "description": "9 d", "sample_id": [ "GSM102760", "GSM102761", "GSM104052" ], "type": "time", "id": "GDS2431_5" }, { "dataset_id": "GDS2431", "description": "11 d", "sample_id": [ "GSM102763", "GSM103323", "GSM104053" ], "type": "time", "id": "GDS2431_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2431", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2431.tab", "compression": "gz" } ], [ [ "GDS2432.tab" ], { "title": "Pituitary adenoma predisposition: whole blood", "description": "Analysis of whole blood from individuals with pituitary adenoma predisposition. Pituitary adenomas are common benign neoplasms characterized by oversecretion of growth hormone, leading to acromegaly. Results provide insight into the molecular basis of pituitary adenomas.", "type": "Expression profiling by array", "pubmed_id": "16728643", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4488", "order": "none", "update_date": "Oct 05 2007", "subsets": [ { "dataset_id": "GDS2432", "description": "control", "sample_id": [ "GSM100895", "GSM100896", "GSM100897", "GSM100898", "GSM100901", "GSM100902", "GSM100903" ], "type": "disease state", "id": "GDS2432_1" }, { "dataset_id": "GDS2432", "description": "pituitary adenoma predisposition", "sample_id": [ "GSM100888", "GSM100889", "GSM100890", "GSM100891", "GSM100892", "GSM100893", "GSM100894", "GSM100899", "GSM100900" ], "type": "disease state", "id": "GDS2432_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2432", "version": 1.0, "instances": "16", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2432.tab", "compression": "gz" } ], [ [ "GDS2433.tab" ], { "title": "Limbal and central corneal epithelial basal cell comparison", "description": "Analysis of microdissected resting limbal epithelial basal cells (LE) and central corneal epithelial (CE) basal cells of the eye. LE are enriched in corneal epithelial stem cells, CE in transient amplifying cells. Results provide insight into the molecular nature of the two basal cell populations.", "type": "Expression profiling by array", "pubmed_id": "16675456", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4098", "order": "none", "update_date": "Jul 17 2007", "subsets": [ { "dataset_id": "GDS2433", "description": "cornea", "sample_id": [ "GSM93716", "GSM93718", "GSM93721", "GSM93723", "GSM93725", "GSM93726", "GSM93728", "GSM93730" ], "type": "tissue", "id": "GDS2433_1" }, { "dataset_id": "GDS2433", "description": "limbus", "sample_id": [ "GSM93717", "GSM93719", "GSM93720", "GSM93722", "GSM93724", "GSM93727", "GSM93729", "GSM93731" ], "type": "tissue", "id": "GDS2433_2" }, { "dataset_id": "GDS2433", "description": "animal 1", "sample_id": [ "GSM93716", "GSM93717" ], "type": "individual", "id": "GDS2433_3" }, { "dataset_id": "GDS2433", "description": "animal 2", "sample_id": [ "GSM93718", "GSM93719" ], "type": "individual", "id": "GDS2433_4" }, { "dataset_id": "GDS2433", "description": "animal 3", "sample_id": [ "GSM93720", "GSM93721" ], "type": "individual", "id": "GDS2433_5" }, { "dataset_id": "GDS2433", "description": "animal 4", "sample_id": [ "GSM93722", "GSM93723" ], "type": "individual", "id": "GDS2433_6" }, { "dataset_id": "GDS2433", "description": "animal 5", "sample_id": [ "GSM93724", "GSM93725" ], "type": "individual", "id": "GDS2433_7" }, { "dataset_id": "GDS2433", "description": "animal 6", "sample_id": [ "GSM93726", "GSM93727" ], "type": "individual", "id": "GDS2433_8" }, { "dataset_id": "GDS2433", "description": "animal 7", "sample_id": [ "GSM93728", "GSM93729" ], "type": "individual", "id": "GDS2433_9" }, { "dataset_id": "GDS2433", "description": "animal 8", "sample_id": [ "GSM93730", "GSM93731" ], "type": "individual", "id": "GDS2433_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2433", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2433.tab", "compression": "gz" } ], [ [ "GDS2434.tab" ], { "title": "Scavenger receptor A mutant olfactory epithelium response to olfactory bulbectomy: time course", "description": "Analysis of olfactory epithelia (OE) of scavenger receptor A (SR-A) mutants at up to 48 hours after olfactory bulbectomy (OBX). OBX induces apoptotic death of olfactory sensory neurons and recruitment of macrophages to the OE. SR-A mediates the binding of macrophages to apoptotic cells.", "type": "Expression profiling by array", "pubmed_id": "16882882", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE3455", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2434", "description": "wild type", "sample_id": [ "GSM78344", "GSM78345", "GSM78346", "GSM80186", "GSM80187", "GSM80188", "GSM80189", "GSM80190", "GSM80191", "GSM80192", "GSM80193", "GSM80194", "GSM80195", "GSM80196", "GSM80197" ], "type": "genotype/variation", "id": "GDS2434_1" }, { "dataset_id": "GDS2434", "description": "mutant", "sample_id": [ "GSM80198", "GSM80199", "GSM80200", "GSM80201", "GSM80202", "GSM80203", "GSM80204", "GSM80205", "GSM80206", "GSM80207", "GSM80208", "GSM80209", "GSM80210", "GSM80211", "GSM80212" ], "type": "genotype/variation", "id": "GDS2434_2" }, { "dataset_id": "GDS2434", "description": "sham", "sample_id": [ "GSM78344", "GSM78345", "GSM78346", "GSM80198", "GSM80199", "GSM80200" ], "type": "protocol", "id": "GDS2434_3" }, { "dataset_id": "GDS2434", "description": "bilateral olfactory bulbectomy", "sample_id": [ "GSM80186", "GSM80187", "GSM80188", "GSM80201", "GSM80202", "GSM80203", "GSM80189", "GSM80190", "GSM80191", "GSM80204", "GSM80205", "GSM80206", "GSM80192", "GSM80193", "GSM80194", "GSM80207", "GSM80208", "GSM80209", "GSM80195", "GSM80196", "GSM80197", "GSM80210", "GSM80211", "GSM80212" ], "type": "protocol", "id": "GDS2434_4" }, { "dataset_id": "GDS2434", "description": "0 h", "sample_id": [ "GSM78344", "GSM78345", "GSM78346", "GSM80198", "GSM80199", "GSM80200" ], "type": "time", "id": "GDS2434_5" }, { "dataset_id": "GDS2434", "description": "2 h", "sample_id": [ "GSM80186", "GSM80187", "GSM80188", "GSM80201", "GSM80202", "GSM80203" ], "type": "time", "id": "GDS2434_6" }, { "dataset_id": "GDS2434", "description": "8 h", "sample_id": [ "GSM80189", "GSM80190", "GSM80191", "GSM80204", "GSM80205", "GSM80206" ], "type": "time", "id": "GDS2434_7" }, { "dataset_id": "GDS2434", "description": "16 h", "sample_id": [ "GSM80192", "GSM80193", "GSM80194", "GSM80207", "GSM80208", "GSM80209" ], "type": "time", "id": "GDS2434_8" }, { "dataset_id": "GDS2434", "description": "48 h", "sample_id": [ "GSM80195", "GSM80196", "GSM80197", "GSM80210", "GSM80211", "GSM80212" ], "type": "time", "id": "GDS2434_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2434", "version": 1.0, "instances": "30", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2434.tab", "compression": "gz" } ], [ [ "GDS2437.tab" ], { "title": "L5 spinal nerve ligation model of neuropathic pain: dorsal root ganglion (RG-U34A)", "description": "Analysis of L4 and L5 dorsal root ganglia (DRG) from animals 28 and 50 days following L5 spinal nerve ligation. L5 spinal nerve ligation is a model of neuropathic pain.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2884", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2437", "description": "sham", "sample_id": [ "GSM63094", "GSM63095", "GSM63096", "GSM63097" ], "type": "protocol", "id": "GDS2437_1" }, { "dataset_id": "GDS2437", "description": "L5 spinal nerve ligation", "sample_id": [ "GSM63085", "GSM63087", "GSM63088", "GSM63089", "GSM63090", "GSM63091", "GSM63092", "GSM63093" ], "type": "protocol", "id": "GDS2437_2" }, { "dataset_id": "GDS2437", "description": "L4 and L5 DRG", "sample_id": [ "GSM63094", "GSM63095", "GSM63096", "GSM63097" ], "type": "tissue", "id": "GDS2437_3" }, { "dataset_id": "GDS2437", "description": "L4 DRG", "sample_id": [ "GSM63085", "GSM63087", "GSM63088", "GSM63089" ], "type": "tissue", "id": "GDS2437_4" }, { "dataset_id": "GDS2437", "description": "L5 DRG", "sample_id": [ "GSM63090", "GSM63091", "GSM63092", "GSM63093" ], "type": "tissue", "id": "GDS2437_5" }, { "dataset_id": "GDS2437", "description": "28 d", "sample_id": [ "GSM63085", "GSM63087", "GSM63090", "GSM63091", "GSM63094", "GSM63095" ], "type": "time", "id": "GDS2437_6" }, { "dataset_id": "GDS2437", "description": "50 d", "sample_id": [ "GSM63088", "GSM63089", "GSM63092", "GSM63093", "GSM63096", "GSM63097" ], "type": "time", "id": "GDS2437_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2437", "version": 1.0, "instances": "12", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2437.tab", "compression": "gz" } ], [ [ "GDS2438.tab" ], { "title": "L5 spinal nerve ligation model of neuropathic pain: dorsal root ganglion (RG-U34B)", "description": "Analysis of L4 and L5 dorsal root ganglia (DRG) from animals 28 and 50 days following L5 spinal nerve ligation. L5 spinal nerve ligation is a model of neuropathic pain.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2884", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2438", "description": "sham", "sample_id": [ "GSM63106", "GSM63107", "GSM63108", "GSM63109" ], "type": "protocol", "id": "GDS2438_1" }, { "dataset_id": "GDS2438", "description": "L5 spinal nerve ligation", "sample_id": [ "GSM63098", "GSM63099", "GSM63100", "GSM63101", "GSM63102", "GSM63103", "GSM63104", "GSM63105" ], "type": "protocol", "id": "GDS2438_2" }, { "dataset_id": "GDS2438", "description": "L4 and L5 DRG", "sample_id": [ "GSM63106", "GSM63107", "GSM63108", "GSM63109" ], "type": "tissue", "id": "GDS2438_3" }, { "dataset_id": "GDS2438", "description": "L4 DRG", "sample_id": [ "GSM63098", "GSM63099", "GSM63100", "GSM63101" ], "type": "tissue", "id": "GDS2438_4" }, { "dataset_id": "GDS2438", "description": "L5 DRG", "sample_id": [ "GSM63102", "GSM63103", "GSM63104", "GSM63105" ], "type": "tissue", "id": "GDS2438_5" }, { "dataset_id": "GDS2438", "description": "28 d", "sample_id": [ "GSM63098", "GSM63099", "GSM63102", "GSM63103", "GSM63106", "GSM63107" ], "type": "time", "id": "GDS2438_6" }, { "dataset_id": "GDS2438", "description": "50 d", "sample_id": [ "GSM63100", "GSM63101", "GSM63104", "GSM63105", "GSM63108", "GSM63109" ], "type": "time", "id": "GDS2438_7" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS2438", "version": 1.0, "instances": "12", "variables": 7622, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2438.tab", "compression": "gz" } ], [ [ "GDS2439.tab" ], { "title": "L5 spinal nerve ligation model of neuropathic pain: dorsal root ganglion (RG-U34C)", "description": "Analysis of L4 and L5 dorsal root ganglia (DRG) from animals 28 and 50 days following L5 spinal nerve ligation. L5 spinal nerve ligation is a model of neuropathic pain.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2884", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2439", "description": "sham", "sample_id": [ "GSM63118", "GSM63119", "GSM63120", "GSM63121" ], "type": "protocol", "id": "GDS2439_1" }, { "dataset_id": "GDS2439", "description": "L5 spinal nerve ligation", "sample_id": [ "GSM63110", "GSM63111", "GSM63112", "GSM63113", "GSM63114", "GSM63115", "GSM63116", "GSM63117" ], "type": "protocol", "id": "GDS2439_2" }, { "dataset_id": "GDS2439", "description": "L4 and L5 DRG", "sample_id": [ "GSM63118", "GSM63119", "GSM63120", "GSM63121" ], "type": "tissue", "id": "GDS2439_3" }, { "dataset_id": "GDS2439", "description": "L4 DRG", "sample_id": [ "GSM63110", "GSM63111", "GSM63112", "GSM63113" ], "type": "tissue", "id": "GDS2439_4" }, { "dataset_id": "GDS2439", "description": "L5 DRG", "sample_id": [ "GSM63114", "GSM63115", "GSM63116", "GSM63117" ], "type": "tissue", "id": "GDS2439_5" }, { "dataset_id": "GDS2439", "description": "28 d", "sample_id": [ "GSM63110", "GSM63111", "GSM63114", "GSM63115", "GSM63118", "GSM63119" ], "type": "time", "id": "GDS2439_6" }, { "dataset_id": "GDS2439", "description": "50 d", "sample_id": [ "GSM63112", "GSM63113", "GSM63116", "GSM63117", "GSM63120", "GSM63121" ], "type": "time", "id": "GDS2439_7" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS2439", "version": 1.0, "instances": "12", "variables": 7586, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2439.tab", "compression": "gz" } ], [ [ "GDS244.tab" ], { "title": "Alveolar septation (U74Cv2)", "description": "Study of alveolar septation using the Mg-delta strain of fibrillin-1 deficient mice which display an early defect in alveolar septation, and serve as a model for Marfan syndrome and emphysema.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE479", "order": "none", "update_date": "Jul 27 2006", "subsets": [ { "dataset_id": "GDS244", "description": "wild type", "sample_id": [ "GSM4049", "GSM4055", "GSM4061", "GSM4067" ], "type": "genotype/variation", "id": "GDS244_1" }, { "dataset_id": "GDS244", "description": "mutant fibrillin-1 deficient", "sample_id": [ "GSM4073", "GSM4079", "GSM4085", "GSM4091" ], "type": "genotype/variation", "id": "GDS244_2" }, { "dataset_id": "GDS244", "description": "postnatal day 1", "sample_id": [ "GSM4049", "GSM4055", "GSM4073", "GSM4079" ], "type": "development stage", "id": "GDS244_3" }, { "dataset_id": "GDS244", "description": "postnatal day 5", "sample_id": [ "GSM4061", "GSM4067", "GSM4085", "GSM4091" ], "type": "development stage", "id": "GDS244_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS244", "version": 1.0, "instances": "8", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS244.tab", "compression": "gz" } ], [ [ "GDS2440.tab" ], { "title": "Dendritic cell development in vitro", "description": "Analysis of dendritic cell (DC) development from Flt3(+)CD11b(+) DC progenitors. DC progenitors treated with GM-CSF for 7 and 10 days to induce differentiation. DCs differentiated for 10 days were subsequently treated with TNFalpha to induce maturation.", "type": "Expression profiling by array", "pubmed_id": "15728461", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE575", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2440", "description": "untreated", "sample_id": [ "GSM8822" ], "type": "protocol", "id": "GDS2440_1" }, { "dataset_id": "GDS2440", "description": "7 d GM-CSF", "sample_id": [ "GSM8823" ], "type": "protocol", "id": "GDS2440_2" }, { "dataset_id": "GDS2440", "description": "10 d GM-CSF", "sample_id": [ "GSM8824" ], "type": "protocol", "id": "GDS2440_3" }, { "dataset_id": "GDS2440", "description": "10 d GM-CSF and 16 h TNFalpha", "sample_id": [ "GSM8825" ], "type": "protocol", "id": "GDS2440_4" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS2440", "version": 1.0, "instances": "4", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2440.tab", "compression": "gz" } ], [ [ "GDS2442.tab" ], { "title": "Insulin-like growth factor-I decrease effect on the liver", "description": "Analysis of livers of animals with decreased serum insulin-like growth factor-I (IGF-I) levels. The liver is the major source of serum IGF-I. The level of serum IGF-I is correlated to bone mineral density (BMD) and fracture risk. Results provide insight into the relationship between IGF-I and BMD.", "type": "Expression profiling by array", "pubmed_id": "17584978", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5959", "order": "none", "update_date": "Nov 15 2006", "subsets": [ { "dataset_id": "GDS2442", "description": "C57BL/6J", "sample_id": [ "GSM138289", "GSM138290", "GSM138291" ], "type": "strain", "id": "GDS2442_1" }, { "dataset_id": "GDS2442", "description": "B6.C3H-6T", "sample_id": [ "GSM138292", "GSM138293", "GSM138294" ], "type": "strain", "id": "GDS2442_2" }, { "dataset_id": "GDS2442", "description": "control", "sample_id": [ "GSM138289", "GSM138290", "GSM138291" ], "type": "other", "id": "GDS2442_3" }, { "dataset_id": "GDS2442", "description": "low serum IGF-I", "sample_id": [ "GSM138292", "GSM138293", "GSM138294" ], "type": "other", "id": "GDS2442_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2442", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2442.tab", "compression": "gz" } ], [ [ "GDS2443.tab" ], { "title": "Prostate cancer progression model: stromal cell", "description": "Analysis of laser-microdissected stromal cells from prostate intraepithelial neoplasias and invasive prostate tumors. Results provide insight into the response of stromal cells to tumor invasion.", "type": "Expression profiling by array", "pubmed_id": "17183660", "platform": "GPL4371", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "17664", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log2 ratio", "reference_series": "GSE5945", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2443", "description": "prostate intraepithelial neoplasia", "sample_id": [ "GSM138326", "GSM138327", "GSM138328", "GSM138329" ], "type": "disease state", "id": "GDS2443_1" }, { "dataset_id": "GDS2443", "description": "invasive prostate tumor", "sample_id": [ "GSM138320", "GSM138321", "GSM138322", "GSM138323", "GSM138324", "GSM138325" ], "type": "disease state", "id": "GDS2443_2" } ], "taxid": "10090", "genes": 11917, "aggregation_function": "mean", "name": "GDS2443", "version": 1.0, "instances": "10", "variables": 11919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2443.tab", "compression": "gz" } ], [ [ "GDS2444.tab" ], { "title": "Dichloroacetate effect on cultured lung carcinoma and glioblastoma cells", "description": "Analysis of A549 lung carcinoma and M059K glioblastoma cells treated with dichloroacetate (DCA), an inhibitor of the mitochondrial pyruvate dehydrogenase kinase. DCA shifts metabolism from glycolysis to glucose oxidation and decreases mitochondrial membrane potential in cancer cells.", "type": "Expression profiling by array", "pubmed_id": "17222789", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6014", "order": "none", "update_date": "Jul 18 2007", "subsets": [ { "dataset_id": "GDS2444", "description": "lung carcinoma", "sample_id": [ "GSM139658", "GSM139670" ], "type": "cell type", "id": "GDS2444_1" }, { "dataset_id": "GDS2444", "description": "glioblastoma", "sample_id": [ "GSM139662", "GSM139665" ], "type": "cell type", "id": "GDS2444_2" }, { "dataset_id": "GDS2444", "description": "untreated", "sample_id": [ "GSM139658", "GSM139662" ], "type": "agent", "id": "GDS2444_3" }, { "dataset_id": "GDS2444", "description": "DCA", "sample_id": [ "GSM139665", "GSM139670" ], "type": "agent", "id": "GDS2444_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2444", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2444.tab", "compression": "gz" } ], [ [ "GDS2445.tab" ], { "title": "Polycomb group protein depletion effect on embryonic fibroblasts", "description": "Analysis of embryonic fibroblasts depleted of the polycomb group (PcG) proteins EZH2, EED, SUZ12, or BMI-1. PcG proteins form complexes that regulate the expression of homeotic genes during development. Results provide insight into the mechanisms employed by PcGs to control development.", "type": "Expression profiling by array", "pubmed_id": "16618801", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE6015", "order": "none", "update_date": "Oct 16 2007", "subsets": [ { "dataset_id": "GDS2445", "description": "control", "sample_id": [ "GSM139762", "GSM139763", "GSM139764" ], "type": "protocol", "id": "GDS2445_1" }, { "dataset_id": "GDS2445", "description": "BMI-1 depletion", "sample_id": [ "GSM139650", "GSM139671", "GSM139672" ], "type": "protocol", "id": "GDS2445_2" }, { "dataset_id": "GDS2445", "description": "EED depletion", "sample_id": [ "GSM139673", "GSM139674", "GSM139675" ], "type": "protocol", "id": "GDS2445_3" }, { "dataset_id": "GDS2445", "description": "EZH2 depletion", "sample_id": [ "GSM139677", "GSM139678", "GSM139679" ], "type": "protocol", "id": "GDS2445_4" }, { "dataset_id": "GDS2445", "description": "SUZ12 depletion", "sample_id": [ "GSM139680", "GSM139681", "GSM139682" ], "type": "protocol", "id": "GDS2445_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2445", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2445.tab", "compression": "gz" } ], [ [ "GDS2446.tab" ], { "title": "PTEN deletion mutation effect on colon cancer cells", "description": "Analysis of HCT116 colon cancer cells in which tumor suppressor gene PTEN had been deleted by gene targeting. Activation of PI3K signaling by PTEN mutations can lead to activation of p53-mediated cell growth suppression. Results provide insight into the role of PTEN in cancer pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17060456", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE6263", "order": "none", "update_date": "Jul 28 2008", "subsets": [ { "dataset_id": "GDS2446", "description": "PTEN plus/plus", "sample_id": [ "GSM144202", "GSM144203" ], "type": "cell line", "id": "GDS2446_1" }, { "dataset_id": "GDS2446", "description": "PTEN minus/minus", "sample_id": [ "GSM144204", "GSM144205", "GSM144206" ], "type": "cell line", "id": "GDS2446_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2446", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2446.tab", "compression": "gz" } ], [ [ "GDS2447.tab" ], { "title": "Transcriptional profiling of tobacco smokers versus controls", "description": "Analysis of lymphoblast cell lines derived from six subjects with active nicotine dependence. Depression susceptibility, nicotine dependence, alcohol dependence, and cannabis dependence have correlated genetic and environmental diatheses. Results provide insight into complex behaviour disorders.", "type": "Expression profiling by array", "pubmed_id": "17342724", "platform": "GPL1426", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33202", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE6264", "order": "none", "update_date": "Jul 29 2008", "subsets": [ { "dataset_id": "GDS2447", "description": "nicotine dependence", "sample_id": [ "GSM144131", "GSM144132", "GSM144133", "GSM144134", "GSM144135", "GSM144136" ], "type": "disease state", "id": "GDS2447_1" }, { "dataset_id": "GDS2447", "description": "control", "sample_id": [ "GSM144122", "GSM144123", "GSM144124", "GSM144125", "GSM144126", "GSM144127", "GSM144128", "GSM144129", "GSM144130" ], "type": "disease state", "id": "GDS2447_2" } ], "taxid": "9606", "genes": 28138, "aggregation_function": "mean", "name": "GDS2447", "version": 1.0, "instances": "15", "variables": 28140, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2447.tab", "compression": "gz" } ], [ [ "GDS2448.tab" ], { "title": "Erythropoietin effect on early erythroid progenitor cells", "description": "Analysis of CD34+ erythroid progenitors stimulated with erythropoietin (Epo) with or without LY294002, a PI3K inhibitor. Epo promotes differentiation and proliferation of early progenitors via activation of PI3K. Results provide insight into molecular mechanisms underlying the effects of Epo.", "type": "Expression profiling by array", "pubmed_id": "16965383", "platform": "GPL3528", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43104", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE6260", "order": "none", "update_date": "Jul 29 2008", "subsets": [ { "dataset_id": "GDS2448", "description": "Epo", "sample_id": [ "GSM144138", "GSM144140", "GSM144147" ], "type": "growth protocol", "id": "GDS2448_1" }, { "dataset_id": "GDS2448", "description": "LY", "sample_id": [ "GSM144137", "GSM144144", "GSM144146" ], "type": "growth protocol", "id": "GDS2448_2" }, { "dataset_id": "GDS2448", "description": "Epo plus LY", "sample_id": [ "GSM144139", "GSM144141", "GSM144142" ], "type": "growth protocol", "id": "GDS2448_3" }, { "dataset_id": "GDS2448", "description": "Medium", "sample_id": [ "GSM144143", "GSM144145", "GSM144148" ], "type": "growth protocol", "id": "GDS2448_4" } ], "taxid": "9606", "genes": 32922, "aggregation_function": "mean", "name": "GDS2448", "version": 1.0, "instances": "12", "variables": 32924, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2448.tab", "compression": "gz" } ], [ [ "GDS245.tab" ], { "title": "Allergen-induced goblet cells", "description": "A-J mice treated intratracheally with saline or IL13. Airway epithelial cells analyzed as they differentiate into goblet cells. Goblet cells increase mucus production which is a characteristic phenotype of allergic asthma.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE481", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS245", "description": "control", "sample_id": [ "GSM4092", "GSM4093" ], "type": "agent", "id": "GDS245_1" }, { "dataset_id": "GDS245", "description": "allergen", "sample_id": [ "GSM4094", "GSM4095", "GSM4096" ], "type": "agent", "id": "GDS245_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS245", "version": 1.0, "instances": "5", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS245.tab", "compression": "gz" } ], [ [ "GDS2451.tab" ], { "title": "TELOMERASE ACTIVATOR 1 overexpression effect on the leaf", "description": "Analysis of leaves overexpressing TELOMERASE ACTIVATOR 1 (TAC1). TAC1 is a zinc finger protein that potentiates many of the responses to auxin, including the induction of telomerase. Results provide insight into the function of TAC1.", "type": "Expression profiling by array", "pubmed_id": "17220202", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5896", "order": "none", "update_date": "Oct 16 2007", "subsets": [ { "dataset_id": "GDS2451", "description": "control", "sample_id": [ "GSM137118", "GSM137119", "GSM137120" ], "type": "strain", "id": "GDS2451_1" }, { "dataset_id": "GDS2451", "description": "TAC1 overexpressing", "sample_id": [ "GSM137121", "GSM137122", "GSM137123" ], "type": "strain", "id": "GDS2451_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2451", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2451.tab", "compression": "gz" } ], [ [ "GDS2452.tab" ], { "title": "Histone deacetylase inhibitor effect on endothelial cells", "description": "Analysis of umbilical vein endothelial cells treated with 500 nM trichostatin A (TSA) for 24 hours. TSA is a histone deacetylase inhibitor. TSA treatment results in decreased endothelial nitric oxide synthase expression.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5856", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2452", "description": "control", "sample_id": [ "GSM136682", "GSM136696", "GSM136697" ], "type": "agent", "id": "GDS2452_1" }, { "dataset_id": "GDS2452", "description": "trichostatin A", "sample_id": [ "GSM136698", "GSM136700", "GSM136702" ], "type": "agent", "id": "GDS2452_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2452", "version": 1.0, "instances": "6", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2452.tab", "compression": "gz" } ], [ [ "GDS2453.tab" ], { "title": "PPAR-gamma activation and RAR-alpha inhibition effect on dendritic cells", "description": "Analysis of dendritic cells (DCs) treated with the PPAR-gamma ligand rosiglitazone alone or with the RAR-alpha antagonist AGN193109. DCs treated with the RAR-alpha agonist AM580 also examined. Results provide insight into the contribution of retinoid signaling to the PPAR-gamma response.", "type": "Expression profiling by array", "pubmed_id": "16982809", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE5679", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2453", "description": "control", "sample_id": [ "GSM132919", "GSM132923", "GSM132927" ], "type": "agent", "id": "GDS2453_1" }, { "dataset_id": "GDS2453", "description": "rosiglitazone", "sample_id": [ "GSM132921", "GSM132924", "GSM132928" ], "type": "agent", "id": "GDS2453_2" }, { "dataset_id": "GDS2453", "description": "rosiglitazone and AGN193109", "sample_id": [ "GSM132926", "GSM132930" ], "type": "agent", "id": "GDS2453_3" }, { "dataset_id": "GDS2453", "description": "AM580", "sample_id": [ "GSM132922", "GSM132925", "GSM132929" ], "type": "agent", "id": "GDS2453_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2453", "version": 1.0, "instances": "11", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2453.tab", "compression": "gz" } ], [ [ "GDS2454.tab" ], { "title": "Tumor-induced CD11b+ splenocyte", "description": "Analysis of CD11b+ splenocytes from tumor-bearing animals. Tumor development often leads to the accumulation of CD11b+ GR-1 myeloid cells. Results provide insight into the molecular basis of the immunosuppressive activity exhibited by tumor-induced CD11b+ splenocytes.", "type": "Expression profiling by array", "pubmed_id": "17016559", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5455", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2454", "description": "tumor free", "sample_id": [ "GSM124911", "GSM124980", "GSM124981" ], "type": "disease state", "id": "GDS2454_1" }, { "dataset_id": "GDS2454", "description": "tumor bearing", "sample_id": [ "GSM124982", "GSM124983", "GSM124984", "GSM124985", "GSM124986", "GSM124987" ], "type": "disease state", "id": "GDS2454_2" }, { "dataset_id": "GDS2454", "description": "control", "sample_id": [ "GSM124911", "GSM124980", "GSM124981", "GSM124982", "GSM124983", "GSM124984" ], "type": "growth protocol", "id": "GDS2454_3" }, { "dataset_id": "GDS2454", "description": "24 hours in complete medium", "sample_id": [ "GSM124985", "GSM124986", "GSM124987" ], "type": "growth protocol", "id": "GDS2454_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2454", "version": 1.0, "instances": "9", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2454.tab", "compression": "gz" } ], [ [ "GDS2455.tab" ], { "title": "Photoreceptor-specific nuclear receptor NR2E3 ectopic expression effect on NRL null retinas", "description": "Analysis of 4 week-old neural retinal leucine zipper (NRL) null retinas expressing photoreceptor-specific nuclear receptor (NR2E3) from the cone-rod homeobox (CRX) promoter. NRL, NR2E3, and CRX control photoreceptor differentiation. Results provide insight into the molecular function of NR2E3.", "type": "Expression profiling by array", "pubmed_id": "16868010", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE5338", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2455", "description": "NRL null", "sample_id": [ "GSM92610", "GSM92611", "GSM92612", "GSM92613" ], "type": "strain", "id": "GDS2455_1" }, { "dataset_id": "GDS2455", "description": "NR2E3 transgene in NRL null", "sample_id": [ "GSM121242", "GSM121249", "GSM121315", "GSM121316" ], "type": "strain", "id": "GDS2455_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2455", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2455.tab", "compression": "gz" } ], [ [ "GDS2456.tab" ], { "title": "Tristetrapolin-deficiency and mRNA decay in fibroblasts: time course", "description": "Analysis of tristetrapolin (TTP)-deficient fibroblasts after serum activation and subsequent actinomycin D treatment for up to 120 minutes. TTP is a tandem CCCH zinc finger protein that binds to AU-rich elements in mRNA, leading to increases in the rates of mRNA deadenylation and destruction.", "type": "Expression profiling by array", "pubmed_id": "17030620", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE5324", "order": "none", "update_date": "Nov 28 2006", "subsets": [ { "dataset_id": "GDS2456", "description": "wild type", "sample_id": [ "GSM120234", "GSM120235", "GSM120236", "GSM120237", "GSM120238", "GSM120244", "GSM120245", "GSM120246", "GSM120247", "GSM120248", "GSM120254", "GSM120255", "GSM120256", "GSM120257", "GSM120258", "GSM120263", "GSM120264", "GSM120265", "GSM120266", "GSM120267", "GSM120272", "GSM120273", "GSM120274", "GSM120275", "GSM120276" ], "type": "genotype/variation", "id": "GDS2456_1" }, { "dataset_id": "GDS2456", "description": "tristetrapolin-deficient", "sample_id": [ "GSM120229", "GSM120230", "GSM120231", "GSM120232", "GSM120233", "GSM120239", "GSM120240", "GSM120241", "GSM120242", "GSM120243", "GSM120249", "GSM120250", "GSM120251", "GSM120252", "GSM120253", "GSM120259", "GSM120260", "GSM120261", "GSM120262", "GSM120268", "GSM120269", "GSM120270", "GSM120271" ], "type": "genotype/variation", "id": "GDS2456_2" }, { "dataset_id": "GDS2456", "description": "control", "sample_id": [ "GSM120229", "GSM120234", "GSM120239", "GSM120244", "GSM120249", "GSM120254", "GSM120259", "GSM120263", "GSM120272" ], "type": "agent", "id": "GDS2456_3" }, { "dataset_id": "GDS2456", "description": "actinomycin D", "sample_id": [ "GSM120230", "GSM120231", "GSM120232", "GSM120233", "GSM120235", "GSM120236", "GSM120237", "GSM120238", "GSM120240", "GSM120241", "GSM120242", "GSM120243", "GSM120245", "GSM120246", "GSM120247", "GSM120248", "GSM120250", "GSM120251", "GSM120252", "GSM120253", "GSM120255", "GSM120256", "GSM120257", "GSM120258", "GSM120260", "GSM120261", "GSM120262", "GSM120264", "GSM120265", "GSM120266", "GSM120267", "GSM120268", "GSM120269", "GSM120270", "GSM120271", "GSM120273", "GSM120274", "GSM120275", "GSM120276" ], "type": "agent", "id": "GDS2456_4" }, { "dataset_id": "GDS2456", "description": "0 min", "sample_id": [ "GSM120229", "GSM120234", "GSM120239", "GSM120244", "GSM120249", "GSM120254", "GSM120259", "GSM120263", "GSM120272" ], "type": "time", "id": "GDS2456_5" }, { "dataset_id": "GDS2456", "description": "30 min", "sample_id": [ "GSM120230", "GSM120235", "GSM120240", "GSM120245", "GSM120250", "GSM120255", "GSM120260", "GSM120264", "GSM120268", "GSM120273" ], "type": "time", "id": "GDS2456_6" }, { "dataset_id": "GDS2456", "description": "60 min", "sample_id": [ "GSM120231", "GSM120236", "GSM120241", "GSM120246", "GSM120251", "GSM120256", "GSM120265", "GSM120269", "GSM120274" ], "type": "time", "id": "GDS2456_7" }, { "dataset_id": "GDS2456", "description": "90 min", "sample_id": [ "GSM120232", "GSM120237", "GSM120242", "GSM120247", "GSM120252", "GSM120257", "GSM120261", "GSM120266", "GSM120270", "GSM120275" ], "type": "time", "id": "GDS2456_8" }, { "dataset_id": "GDS2456", "description": "120 min", "sample_id": [ "GSM120233", "GSM120238", "GSM120243", "GSM120248", "GSM120253", "GSM120258", "GSM120262", "GSM120267", "GSM120271", "GSM120276" ], "type": "time", "id": "GDS2456_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2456", "version": 1.0, "instances": "48", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2456.tab", "compression": "gz" } ], [ [ "GDS2457.tab" ], { "title": "Hypoxia effect on the adrenal gland", "description": "Analysis of adrenal glands from postnatal day 7 animals exposed to hypoxia from birth. Results provide insight into the role of the adrenal gland in mediating the increase in plasma corticosterone and steroidogenesis observed in animals exposed to hypoxia from birth.", "type": "Expression profiling by array", "pubmed_id": "17213367", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE6249", "order": "none", "update_date": "Nov 28 2006", "subsets": [ { "dataset_id": "GDS2457", "description": "normoxia", "sample_id": [ "GSM143946", "GSM143947", "GSM143948", "GSM143949" ], "type": "stress", "id": "GDS2457_1" }, { "dataset_id": "GDS2457", "description": "hypoxia", "sample_id": [ "GSM143950", "GSM143951", "GSM143952", "GSM143953" ], "type": "stress", "id": "GDS2457_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2457", "version": 1.0, "instances": "8", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2457.tab", "compression": "gz" } ], [ [ "GDS246.tab" ], { "title": "Hypoxia", "description": "Analysis of the effects of intermittent hypoxia on brain, heart, lung and muscle tissue. Included as part of a sleep apnea study.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE480", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS246", "description": "control", "sample_id": [ "GSM4097", "GSM4098", "GSM4099", "GSM6678" ], "type": "protocol", "id": "GDS246_1" }, { "dataset_id": "GDS246", "description": "fragmented sleep", "sample_id": [ "GSM4102", "GSM4103", "GSM4104", "GSM6679" ], "type": "protocol", "id": "GDS246_2" }, { "dataset_id": "GDS246", "description": "hypoxia", "sample_id": [ "GSM4110", "GSM4111", "GSM6680" ], "type": "protocol", "id": "GDS246_3" }, { "dataset_id": "GDS246", "description": "brain", "sample_id": [ "GSM4097", "GSM4102" ], "type": "tissue", "id": "GDS246_4" }, { "dataset_id": "GDS246", "description": "heart", "sample_id": [ "GSM4098", "GSM4103", "GSM4110" ], "type": "tissue", "id": "GDS246_5" }, { "dataset_id": "GDS246", "description": "muscle", "sample_id": [ "GSM4099", "GSM4104", "GSM4111" ], "type": "tissue", "id": "GDS246_6" }, { "dataset_id": "GDS246", "description": "lung", "sample_id": [ "GSM6678", "GSM6679", "GSM6680" ], "type": "tissue", "id": "GDS246_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS246", "version": 1.0, "instances": "11", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS246.tab", "compression": "gz" } ], [ [ "GDS2460.tab" ], { "title": "Autoimmune model: CD4+ T cells", "description": "Analysis of CD4+ T cells from sanroque mutants that produce antinuclear autoantibodies. sanroque mutants exhibit a phenotype resembling the autoimmune disease systemic lupus erythematosus. Results provide insight into the molecular basis of the autoimmunity in the sanroque strain.", "type": "Expression profiling by array", "pubmed_id": "15917799", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2376", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2460", "description": "wild type", "sample_id": [ "GSM44820", "GSM44828" ], "type": "strain", "id": "GDS2460_1" }, { "dataset_id": "GDS2460", "description": "sanroque", "sample_id": [ "GSM44825", "GSM44831" ], "type": "strain", "id": "GDS2460_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2460", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2460.tab", "compression": "gz" } ], [ [ "GDS2461.tab" ], { "title": "Clock neuron function destruction effect on the head", "description": "Analysis of heads of transgenics expressing a polyglutamine-expanded neurotoxin in the major timeless (tim)-expressing cells of the adult brain. tim is a clock gene. Results provide insight into the effect of the complete absence of clock-neuron function on behavior and molecular phenotypes.", "type": "Expression profiling by array", "pubmed_id": "16938865", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE2422", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2461", "description": "control", "sample_id": [ "GSM45592", "GSM45593", "GSM45594" ], "type": "agent", "id": "GDS2461_1" }, { "dataset_id": "GDS2461", "description": "neurotoxin", "sample_id": [ "GSM45595", "GSM45596", "GSM45597" ], "type": "agent", "id": "GDS2461_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2461", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2461.tab", "compression": "gz" } ], [ [ "GDS2462.tab" ], { "title": "Microbioreactor-grown cells", "description": "Analysis of cells grown in glucose or galactose media in 150 microliter bioreactors equipped with sensors for measuring optical density, pH, and dissolved oxygen. Results provide insight into the feasibility of integrating high-throughput studies of growth physiology with global gene expression.", "type": "Expression profiling by array", "pubmed_id": "16739953", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE2605", "order": "none", "update_date": "Nov 29 2006", "subsets": [ { "dataset_id": "GDS2462", "description": "glucose media", "sample_id": [ "GSM50011", "GSM50012" ], "type": "growth protocol", "id": "GDS2462_1" }, { "dataset_id": "GDS2462", "description": "galactose media", "sample_id": [ "GSM50009", "GSM50010" ], "type": "growth protocol", "id": "GDS2462_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2462", "version": 1.0, "instances": "4", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2462.tab", "compression": "gz" } ], [ [ "GDS2463.tab" ], { "title": "Basic helix-loop-helix transcription factor Twist overexpression", "description": "Analysis of animals overexpressing the basic helix-loop-helix (bHLH) transcription factor Twist and its heterodimeric bHLH partner E/DA. Twist is important in mesoderm development. Results provide insight into the function of Twist in mesoderm development.", "type": "Expression profiling by array", "pubmed_id": "16480708", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE2862", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2463", "description": "control", "sample_id": [ "GSM62936", "GSM62937", "GSM62940", "GSM62941", "GSM62944", "GSM62945" ], "type": "strain", "id": "GDS2463_1" }, { "dataset_id": "GDS2463", "description": "Twist E/DA transgenic", "sample_id": [ "GSM62934", "GSM62935", "GSM62938", "GSM62939", "GSM62942", "GSM62943" ], "type": "strain", "id": "GDS2463_2" }, { "dataset_id": "GDS2463", "description": "control", "sample_id": [ "GSM62934", "GSM62936", "GSM62938", "GSM62940", "GSM62942", "GSM62944" ], "type": "protocol", "id": "GDS2463_3" }, { "dataset_id": "GDS2463", "description": "overexpression", "sample_id": [ "GSM62935", "GSM62937", "GSM62939", "GSM62941", "GSM62943", "GSM62945" ], "type": "protocol", "id": "GDS2463_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS2463", "version": 1.0, "instances": "12", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2463.tab", "compression": "gz" } ], [ [ "GDS2464.tab" ], { "title": "Polyglutamine expansion disease model: retina", "description": "Analysis of retinas from R7E animals expressing the mutant ataxin-7, which harbors 90 glutamines. Polyglutamine expansion in ataxin-7 causes spinocerebellar ataxia type 7 (SCA7). Results provide insight into the molecular and cellular pathways involved in polyglutamine-induced retinal degeneration.", "type": "Expression profiling by array", "pubmed_id": "17005371", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE3634", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2464", "description": "wild type", "sample_id": [ "GSM84313", "GSM84314", "GSM84315", "GSM84316" ], "type": "cell type", "id": "GDS2464_1" }, { "dataset_id": "GDS2464", "description": "mutant huntingtin transgene", "sample_id": [ "GSM84309", "GSM84310", "GSM84311", "GSM84312" ], "type": "cell type", "id": "GDS2464_2" }, { "dataset_id": "GDS2464", "description": "normal ataxin-7 transgene", "sample_id": [ "GSM84317", "GSM84318", "GSM84319", "GSM84320", "GSM84321", "GSM84322", "GSM84323", "GSM84324", "GSM84325", "GSM84326", "GSM84327" ], "type": "cell type", "id": "GDS2464_3" }, { "dataset_id": "GDS2464", "description": "mutant ataxin-7 transgene", "sample_id": [ "GSM84328", "GSM84329", "GSM84330", "GSM84331", "GSM84332", "GSM84333", "GSM84334", "GSM84335", "GSM84336", "GSM84337", "GSM84338" ], "type": "cell type", "id": "GDS2464_4" }, { "dataset_id": "GDS2464", "description": "3 wk", "sample_id": [ "GSM84317", "GSM84318", "GSM84319", "GSM84320", "GSM84321", "GSM84328", "GSM84329", "GSM84330", "GSM84331", "GSM84332" ], "type": "age", "id": "GDS2464_5" }, { "dataset_id": "GDS2464", "description": "9 wk", "sample_id": [ "GSM84309", "GSM84310", "GSM84311", "GSM84312", "GSM84313", "GSM84314", "GSM84315", "GSM84316", "GSM84322", "GSM84323", "GSM84324", "GSM84325", "GSM84326", "GSM84327", "GSM84333", "GSM84334", "GSM84335", "GSM84336", "GSM84337", "GSM84338" ], "type": "age", "id": "GDS2464_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2464", "version": 1.0, "instances": "30", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2464.tab", "compression": "gz" } ], [ [ "GDS2466.tab" ], { "title": "Carotid body and genetic background", "description": "Comparison of carotid bodies (CBs) of A/J and DBA/2J animals. The CB is the primary hypoxic chemosensory organ. A/J animals are low responders to hypoxia, while DBA/2J animals are high responders. Results provide insight into the mechanisms regulating hypoxic sensitivity in the CB.", "type": "Expression profiling by array", "pubmed_id": "17098806", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5313", "order": "none", "update_date": "Dec 04 2006", "subsets": [ { "dataset_id": "GDS2466", "description": "A/J", "sample_id": [ "GSM120398", "GSM120399", "GSM120400" ], "type": "strain", "id": "GDS2466_1" }, { "dataset_id": "GDS2466", "description": "DBA/2J", "sample_id": [ "GSM120401", "GSM120402", "GSM120403" ], "type": "strain", "id": "GDS2466_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2466", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2466.tab", "compression": "gz" } ], [ [ "GDS2468.tab" ], { "title": "Soy and whey protein diets effect on colon tumorigenesis", "description": "Analysis of colons of soy or whey protein fed Sprague Dawley males 40 weeks after azoxymethane (AOM) injection to induce tumor formation. Lifetime consumption of soy or whey proteins reduces the incidence of AOM-induced colon tumors in rats.", "type": "Expression profiling by array", "pubmed_id": "15644144", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE6102", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2468", "description": "casein control diet", "sample_id": [ "GSM141501", "GSM141502", "GSM141503" ], "type": "protocol", "id": "GDS2468_1" }, { "dataset_id": "GDS2468", "description": "soy diet", "sample_id": [ "GSM141504", "GSM141505", "GSM141506" ], "type": "protocol", "id": "GDS2468_2" }, { "dataset_id": "GDS2468", "description": "whey diet", "sample_id": [ "GSM141507", "GSM141508", "GSM141509" ], "type": "protocol", "id": "GDS2468_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2468", "version": 1.0, "instances": "9", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2468.tab", "compression": "gz" } ], [ [ "GDS247.tab" ], { "title": "Hyperoxic lung injury (U74Av2)", "description": "Lung tissue from wild type and Nrf2 knock out mice examined after treatment with 100% oxygen to induce injury. Nrf2 mutant mice have increased susceptibility to hyperoxic lung injury. Search for downstream effector genes regulated by Nrf2.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE495", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS247", "description": "Nrf2 mutant", "sample_id": [ "GSM4119" ], "type": "strain", "id": "GDS247_1" }, { "dataset_id": "GDS247", "description": "wild type", "sample_id": [ "GSM4114", "GSM4124", "GSM4127", "GSM4130", "GSM4133", "GSM4136" ], "type": "strain", "id": "GDS247_2" }, { "dataset_id": "GDS247", "description": "normal oxygen", "sample_id": [ "GSM4114", "GSM4119" ], "type": "protocol", "id": "GDS247_3" }, { "dataset_id": "GDS247", "description": "100% oxygen", "sample_id": [ "GSM4124", "GSM4127", "GSM4130", "GSM4133", "GSM4136" ], "type": "protocol", "id": "GDS247_4" }, { "dataset_id": "GDS247", "description": "0 hour", "sample_id": [ "GSM4114", "GSM4119" ], "type": "time", "id": "GDS247_5" }, { "dataset_id": "GDS247", "description": "24 hour", "sample_id": [ "GSM4124" ], "type": "time", "id": "GDS247_6" }, { "dataset_id": "GDS247", "description": "48 hour", "sample_id": [ "GSM4127", "GSM4130" ], "type": "time", "id": "GDS247_7" }, { "dataset_id": "GDS247", "description": "72 hour", "sample_id": [ "GSM4133", "GSM4136" ], "type": "time", "id": "GDS247_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS247", "version": 1.0, "instances": "7", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS247.tab", "compression": "gz" } ], [ [ "GDS2470.tab" ], { "title": "Neural tube defect: amniotic fluid", "description": "Analysis of amniotic fluid samples from pregnant women carrying fetuses with neural tube defects (NTDs) diagnosed during ultrasound examination. Results provide insight into the feasibility of using amniotic fluid samples to characterize polygenic disorders, such as NTD, at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "17008366", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4182", "order": "none", "update_date": "Dec 05 2006", "subsets": [ { "dataset_id": "GDS2470", "description": "normal", "sample_id": [ "GSM94598", "GSM94599", "GSM94603", "GSM94604", "GSM94605" ], "type": "disease state", "id": "GDS2470_1" }, { "dataset_id": "GDS2470", "description": "neural tube defect", "sample_id": [ "GSM94597", "GSM94600", "GSM94601", "GSM94602" ], "type": "disease state", "id": "GDS2470_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2470", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2470.tab", "compression": "gz" } ], [ [ "GDS2471.tab" ], { "title": "Serum amyloid A effect on endothelial cells: time course", "description": "Analysis of umbilical vein endothelial (HUVEC) cells stimulated with serum amyloid A (SAA) for up to 48 hours. SAA is an acute phase protein.", "type": "Expression profiling by array", "pubmed_id": "18552508", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE6241", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2471", "description": "untreated", "sample_id": [ "GSM143726", "GSM143727" ], "type": "agent", "id": "GDS2471_1" }, { "dataset_id": "GDS2471", "description": "serum amyloid A", "sample_id": [ "GSM143728", "GSM143729", "GSM143730", "GSM143731", "GSM143732", "GSM143733" ], "type": "agent", "id": "GDS2471_2" }, { "dataset_id": "GDS2471", "description": "0 h", "sample_id": [ "GSM143726", "GSM143727" ], "type": "time", "id": "GDS2471_3" }, { "dataset_id": "GDS2471", "description": "4 h", "sample_id": [ "GSM143728", "GSM143729" ], "type": "time", "id": "GDS2471_4" }, { "dataset_id": "GDS2471", "description": "24 h", "sample_id": [ "GSM143730", "GSM143731" ], "type": "time", "id": "GDS2471_5" }, { "dataset_id": "GDS2471", "description": "48 h", "sample_id": [ "GSM143732", "GSM143733" ], "type": "time", "id": "GDS2471_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2471", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2471.tab", "compression": "gz" } ], [ [ "GDS2472.tab" ], { "title": "Glucosamine and interleukin-1 beta effect on chondrocytes", "description": "Analysis of cultured articular chondrocytes treated with glucosamine for 6 hours and then by interleukin-1 beta for 14 hours. Cytokines, such as interleukin-1 (IL-1), contribute to the pathogenesis of osteoarthritis. Results provide insight into the anti-arthritic properties of glucosamine.", "type": "Expression profiling by array", "pubmed_id": "17109745", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE6119", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2472", "description": "control", "sample_id": [ "GSM143136", "GSM143137", "GSM143138" ], "type": "agent", "id": "GDS2472_1" }, { "dataset_id": "GDS2472", "description": "IL-1", "sample_id": [ "GSM143132", "GSM143133", "GSM143134", "GSM143135" ], "type": "agent", "id": "GDS2472_2" }, { "dataset_id": "GDS2472", "description": "glucosamine", "sample_id": [ "GSM143126", "GSM143127", "GSM143128" ], "type": "agent", "id": "GDS2472_3" }, { "dataset_id": "GDS2472", "description": "IL-1 and glucosamine", "sample_id": [ "GSM143129", "GSM143130", "GSM143131" ], "type": "agent", "id": "GDS2472_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2472", "version": 1.0, "instances": "13", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2472.tab", "compression": "gz" } ], [ [ "GDS2474.tab" ], { "title": "Anther development: time course (low-intensity scan)", "description": "Analysis of upper and lower floret anthers at six developmental stages; morphologically, the anthers proceed through the same developmental program. Each array was scanned at multiple intensities. Results reveal enhanced discovery of differentially expressed genes over the single-scan approach.", "type": "Expression profiling by array", "pubmed_id": "16731695", "platform": "GPL3021", "platform_organism": "Zea mays", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12160", "sample_organism": "Zea mays", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE3017", "order": "none", "update_date": "Dec 08 2006", "subsets": [ { "dataset_id": "GDS2474", "description": "meiocyte", "sample_id": [ "GSM75649", "GSM75667", "GSM75742", "GSM75771" ], "type": "development stage", "id": "GDS2474_1" }, { "dataset_id": "GDS2474", "description": "dyad/tetrad (mixed)", "sample_id": [ "GSM75652", "GSM75670", "GSM75750", "GSM75774" ], "type": "development stage", "id": "GDS2474_2" }, { "dataset_id": "GDS2474", "description": "tetrad", "sample_id": [ "GSM75655", "GSM75673", "GSM75757", "GSM75777" ], "type": "development stage", "id": "GDS2474_3" }, { "dataset_id": "GDS2474", "description": "early microspore", "sample_id": [ "GSM75658", "GSM75676", "GSM75762", "GSM75780" ], "type": "development stage", "id": "GDS2474_4" }, { "dataset_id": "GDS2474", "description": "mid-microspore", "sample_id": [ "GSM75661", "GSM75679", "GSM75765", "GSM75783" ], "type": "development stage", "id": "GDS2474_5" }, { "dataset_id": "GDS2474", "description": "mid/late-microspore (mixed)", "sample_id": [ "GSM75664", "GSM75682", "GSM75768", "GSM75786" ], "type": "development stage", "id": "GDS2474_6" }, { "dataset_id": "GDS2474", "description": "spikelet M1", "sample_id": [ "GSM75649", "GSM75667" ], "type": "other", "id": "GDS2474_7" }, { "dataset_id": "GDS2474", "description": "spikelet M2", "sample_id": [ "GSM75742", "GSM75771" ], "type": "other", "id": "GDS2474_8" }, { "dataset_id": "GDS2474", "description": "spikelet D/T1", "sample_id": [ "GSM75652", "GSM75670" ], "type": "other", "id": "GDS2474_9" }, { "dataset_id": "GDS2474", "description": "spikelet D/T2", "sample_id": [ "GSM75750", "GSM75774" ], "type": "other", "id": "GDS2474_10" }, { "dataset_id": "GDS2474", "description": "spikelet T1", "sample_id": [ "GSM75655", "GSM75673" ], "type": "other", "id": "GDS2474_11" }, { "dataset_id": "GDS2474", "description": "spikelet T2", "sample_id": [ "GSM75757", "GSM75777" ], "type": "other", "id": "GDS2474_12" }, { "dataset_id": "GDS2474", "description": "spikelet EM1", "sample_id": [ "GSM75658", "GSM75676" ], "type": "other", "id": "GDS2474_13" }, { "dataset_id": "GDS2474", "description": "spikelet EM2", "sample_id": [ "GSM75762", "GSM75780" ], "type": "other", "id": "GDS2474_14" }, { "dataset_id": "GDS2474", "description": "spikelet MM1", "sample_id": [ "GSM75661", "GSM75679" ], "type": "other", "id": "GDS2474_15" }, { "dataset_id": "GDS2474", "description": "spikelet MM2", "sample_id": [ "GSM75765", "GSM75783" ], "type": "other", "id": "GDS2474_16" }, { "dataset_id": "GDS2474", "description": "spikelet M/LM1", "sample_id": [ "GSM75664", "GSM75682" ], "type": "other", "id": "GDS2474_17" }, { "dataset_id": "GDS2474", "description": "spikelet M/LM2", "sample_id": [ "GSM75768", "GSM75786" ], "type": "other", "id": "GDS2474_18" } ], "taxid": "4577", "genes": 6833, "aggregation_function": "mean", "name": "GDS2474", "version": 1.0, "instances": "24", "variables": 6836, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2474.tab", "compression": "gz" } ], [ [ "GDS2475.tab" ], { "title": "Anther development: time course (medium-intensity scan)", "description": "Analysis of upper and lower floret anthers at six developmental stages; morphologically, the anthers proceed through the same developmental program. Each array was scanned at multiple intensities. Results reveal enhanced discovery of differentially expressed genes over the single-scan approach.", "type": "Expression profiling by array", "pubmed_id": "16731695", "platform": "GPL3021", "platform_organism": "Zea mays", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12160", "sample_organism": "Zea mays", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE3017", "order": "none", "update_date": "Dec 08 2006", "subsets": [ { "dataset_id": "GDS2475", "description": "meiocyte", "sample_id": [ "GSM75650", "GSM75668", "GSM75744", "GSM75772" ], "type": "development stage", "id": "GDS2475_1" }, { "dataset_id": "GDS2475", "description": "dyad/tetrad (mixed)", "sample_id": [ "GSM75653", "GSM75671", "GSM75752", "GSM75775" ], "type": "development stage", "id": "GDS2475_2" }, { "dataset_id": "GDS2475", "description": "tetrad", "sample_id": [ "GSM75656", "GSM75674", "GSM75760", "GSM75778" ], "type": "development stage", "id": "GDS2475_3" }, { "dataset_id": "GDS2475", "description": "early microspore", "sample_id": [ "GSM75659", "GSM75677", "GSM75763", "GSM75781" ], "type": "development stage", "id": "GDS2475_4" }, { "dataset_id": "GDS2475", "description": "mid-microspore", "sample_id": [ "GSM75662", "GSM75680", "GSM75766", "GSM75784" ], "type": "development stage", "id": "GDS2475_5" }, { "dataset_id": "GDS2475", "description": "mid/late-microspore (mixed)", "sample_id": [ "GSM75665", "GSM75769", "GSM75787", "GSM75683" ], "type": "development stage", "id": "GDS2475_6" }, { "dataset_id": "GDS2475", "description": "spikelet M1", "sample_id": [ "GSM75650", "GSM75668" ], "type": "other", "id": "GDS2475_7" }, { "dataset_id": "GDS2475", "description": "spikelet M2", "sample_id": [ "GSM75744", "GSM75772" ], "type": "other", "id": "GDS2475_8" }, { "dataset_id": "GDS2475", "description": "spikelet D/T1", "sample_id": [ "GSM75653", "GSM75671" ], "type": "other", "id": "GDS2475_9" }, { "dataset_id": "GDS2475", "description": "spikelet D/T2", "sample_id": [ "GSM75752", "GSM75775" ], "type": "other", "id": "GDS2475_10" }, { "dataset_id": "GDS2475", "description": "spikelet T1", "sample_id": [ "GSM75656", "GSM75674" ], "type": "other", "id": "GDS2475_11" }, { "dataset_id": "GDS2475", "description": "spikelet T2", "sample_id": [ "GSM75760", "GSM75778" ], "type": "other", "id": "GDS2475_12" }, { "dataset_id": "GDS2475", "description": "spikelet EM1", "sample_id": [ "GSM75659", "GSM75677" ], "type": "other", "id": "GDS2475_13" }, { "dataset_id": "GDS2475", "description": "spikelet EM2", "sample_id": [ "GSM75763", "GSM75781" ], "type": "other", "id": "GDS2475_14" }, { "dataset_id": "GDS2475", "description": "spikelet MM1", "sample_id": [ "GSM75662", "GSM75680" ], "type": "other", "id": "GDS2475_15" }, { "dataset_id": "GDS2475", "description": "spikelet MM2", "sample_id": [ "GSM75766", "GSM75784" ], "type": "other", "id": "GDS2475_16" }, { "dataset_id": "GDS2475", "description": "spikelet M/LM1", "sample_id": [ "GSM75665", "GSM75769" ], "type": "other", "id": "GDS2475_17" }, { "dataset_id": "GDS2475", "description": "spikelet M/LM2", "sample_id": [ "GSM75787", "GSM75683" ], "type": "other", "id": "GDS2475_18" } ], "taxid": "4577", "genes": 6833, "aggregation_function": "mean", "name": "GDS2475", "version": 1.0, "instances": "24", "variables": 6836, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2475.tab", "compression": "gz" } ], [ [ "GDS2477.tab" ], { "title": "Anther development: time course (high-intensity scan)", "description": "Analysis of upper and lower floret anthers at six developmental stages; morphologically, the anthers proceed through the same developmental program. Each array was scanned at multiple intensities. Results reveal enhanced discovery of differentially expressed genes over the single-scan approach.", "type": "Expression profiling by array", "pubmed_id": "16731695", "platform": "GPL3021", "platform_organism": "Zea mays", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12160", "sample_organism": "Zea mays", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE3017", "order": "none", "update_date": "Dec 08 2006", "subsets": [ { "dataset_id": "GDS2477", "description": "meiocyte", "sample_id": [ "GSM75651", "GSM75669", "GSM75747", "GSM75773" ], "type": "development stage", "id": "GDS2477_1" }, { "dataset_id": "GDS2477", "description": "dyad/tetrad (mixed)", "sample_id": [ "GSM75654", "GSM75672", "GSM75755", "GSM75776" ], "type": "development stage", "id": "GDS2477_2" }, { "dataset_id": "GDS2477", "description": "tetrad", "sample_id": [ "GSM75657", "GSM75675", "GSM75761", "GSM75779" ], "type": "development stage", "id": "GDS2477_3" }, { "dataset_id": "GDS2477", "description": "early microspore", "sample_id": [ "GSM75660", "GSM75678", "GSM75764", "GSM75782" ], "type": "development stage", "id": "GDS2477_4" }, { "dataset_id": "GDS2477", "description": "mid-microspore", "sample_id": [ "GSM75663", "GSM75681", "GSM75767", "GSM75785" ], "type": "development stage", "id": "GDS2477_5" }, { "dataset_id": "GDS2477", "description": "mid/late-microspore (mixed)", "sample_id": [ "GSM75666", "GSM75770", "GSM75788", "GSM75684" ], "type": "development stage", "id": "GDS2477_6" }, { "dataset_id": "GDS2477", "description": "spikelet M1", "sample_id": [ "GSM75651", "GSM75669" ], "type": "other", "id": "GDS2477_7" }, { "dataset_id": "GDS2477", "description": "spikelet M2", "sample_id": [ "GSM75747", "GSM75773" ], "type": "other", "id": "GDS2477_8" }, { "dataset_id": "GDS2477", "description": "spikelet D/T1", "sample_id": [ "GSM75654", "GSM75672" ], "type": "other", "id": "GDS2477_9" }, { "dataset_id": "GDS2477", "description": "spikelet D/T2", "sample_id": [ "GSM75755", "GSM75776" ], "type": "other", "id": "GDS2477_10" }, { "dataset_id": "GDS2477", "description": "spikelet T1", "sample_id": [ "GSM75657", "GSM75675" ], "type": "other", "id": "GDS2477_11" }, { "dataset_id": "GDS2477", "description": "spikelet T2", "sample_id": [ "GSM75761", "GSM75779" ], "type": "other", "id": "GDS2477_12" }, { "dataset_id": "GDS2477", "description": "spikelet EM1", "sample_id": [ "GSM75660", "GSM75678" ], "type": "other", "id": "GDS2477_13" }, { "dataset_id": "GDS2477", "description": "spikelet EM2", "sample_id": [ "GSM75764", "GSM75782" ], "type": "other", "id": "GDS2477_14" }, { "dataset_id": "GDS2477", "description": "spikelet MM1", "sample_id": [ "GSM75663", "GSM75681" ], "type": "other", "id": "GDS2477_15" }, { "dataset_id": "GDS2477", "description": "spikelet MM2", "sample_id": [ "GSM75767", "GSM75785" ], "type": "other", "id": "GDS2477_16" }, { "dataset_id": "GDS2477", "description": "spikelet M/LM1", "sample_id": [ "GSM75666", "GSM75770" ], "type": "other", "id": "GDS2477_17" }, { "dataset_id": "GDS2477", "description": "spikelet M/LM2", "sample_id": [ "GSM75788", "GSM75684" ], "type": "other", "id": "GDS2477_18" } ], "taxid": "4577", "genes": 6833, "aggregation_function": "mean", "name": "GDS2477", "version": 1.0, "instances": "24", "variables": 6836, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2477.tab", "compression": "gz" } ], [ [ "GDS2478.tab" ], { "title": "Inflammatory acne", "description": "Analysis of inflammatory papules and normal skin from six patients with acne. Results provide insight into the molecular pathogenesis of acne.", "type": "Expression profiling by array", "pubmed_id": "16528362", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE6475", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2478", "description": "normal", "sample_id": [ "GSM148748", "GSM148763", "GSM148765", "GSM148767", "GSM148769", "GSM148771", "GSM148887", "GSM148888", "GSM148889", "GSM148890", "GSM148892", "GSM148894" ], "type": "disease state", "id": "GDS2478_1" }, { "dataset_id": "GDS2478", "description": "acne", "sample_id": [ "GSM148725", "GSM148762", "GSM148764", "GSM148766", "GSM148768", "GSM148770" ], "type": "disease state", "id": "GDS2478_2" }, { "dataset_id": "GDS2478", "description": "control subject", "sample_id": [ "GSM148887", "GSM148888", "GSM148889", "GSM148890", "GSM148892", "GSM148894" ], "type": "other", "id": "GDS2478_3" }, { "dataset_id": "GDS2478", "description": "acne patient", "sample_id": [ "GSM148725", "GSM148748", "GSM148762", "GSM148763", "GSM148764", "GSM148765", "GSM148766", "GSM148767", "GSM148768", "GSM148769", "GSM148770", "GSM148771" ], "type": "other", "id": "GDS2478_4" }, { "dataset_id": "GDS2478", "description": "ctl 1", "sample_id": [ "GSM148887" ], "type": "individual", "id": "GDS2478_5" }, { "dataset_id": "GDS2478", "description": "ctl 2", "sample_id": [ "GSM148888" ], "type": "individual", "id": "GDS2478_6" }, { "dataset_id": "GDS2478", "description": "ctl 3", "sample_id": [ "GSM148889" ], "type": "individual", "id": "GDS2478_7" }, { "dataset_id": "GDS2478", "description": "ctl 4", "sample_id": [ "GSM148890" ], "type": "individual", "id": "GDS2478_8" }, { "dataset_id": "GDS2478", "description": "ctl 5", "sample_id": [ "GSM148892" ], "type": "individual", "id": "GDS2478_9" }, { "dataset_id": "GDS2478", "description": "ctl 6", "sample_id": [ "GSM148894" ], "type": "individual", "id": "GDS2478_10" }, { "dataset_id": "GDS2478", "description": "pt 1", "sample_id": [ "GSM148725", "GSM148748" ], "type": "individual", "id": "GDS2478_11" }, { "dataset_id": "GDS2478", "description": "pt 2", "sample_id": [ "GSM148762", "GSM148763" ], "type": "individual", "id": "GDS2478_12" }, { "dataset_id": "GDS2478", "description": "pt 3", "sample_id": [ "GSM148764", "GSM148765" ], "type": "individual", "id": "GDS2478_13" }, { "dataset_id": "GDS2478", "description": "pt 4", "sample_id": [ "GSM148766", "GSM148767" ], "type": "individual", "id": "GDS2478_14" }, { "dataset_id": "GDS2478", "description": "pt 5", "sample_id": [ "GSM148768", "GSM148769" ], "type": "individual", "id": "GDS2478_15" }, { "dataset_id": "GDS2478", "description": "pt 6", "sample_id": [ "GSM148770", "GSM148771" ], "type": "individual", "id": "GDS2478_16" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2478", "version": 1.0, "instances": "18", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2478.tab", "compression": "gz" } ], [ [ "GDS2479.tab" ], { "title": "Photoreceptor cell mRNA purified by mRNA tagging", "description": "Analysis of mRNA purified by mRNA-tagging from photoreceptors cells. These cells are engineered to express a FLAG-tagged poly(A)-binding protein (PABP) that allows separation of their mRNA from those of cells not expressing the tagged PABP. Results provide insight into the validity of this approach.", "type": "Expression profiling by array", "pubmed_id": "16204451", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1790", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2479", "description": "wild type", "sample_id": [ "GSM30824", "GSM30825", "GSM30826", "GSM30827", "GSM30828", "GSM30830" ], "type": "genotype/variation", "id": "GDS2479_1" }, { "dataset_id": "GDS2479", "description": "FLAG-tagged PABP transgenic", "sample_id": [ "GSM30832", "GSM30833", "GSM30834", "GSM30835", "GSM30900", "GSM30901", "GSM30902", "GSM30903" ], "type": "genotype/variation", "id": "GDS2479_2" }, { "dataset_id": "GDS2479", "description": "whole head", "sample_id": [ "GSM30824", "GSM30825", "GSM30826", "GSM30827", "GSM30828", "GSM30830", "GSM30832", "GSM30833", "GSM30834", "GSM30835" ], "type": "tissue", "id": "GDS2479_3" }, { "dataset_id": "GDS2479", "description": "photoreceptor cells", "sample_id": [ "GSM30900", "GSM30901", "GSM30902", "GSM30903" ], "type": "tissue", "id": "GDS2479_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2479", "version": 1.0, "instances": "14", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2479.tab", "compression": "gz" } ], [ [ "GDS248.tab" ], { "title": "Hyperoxic lung injury (U74Bv2)", "description": "Lung tissue from wild type and Nrf2 knock out mice examined after treatment with 100% oxygen to induce injury. Nrf2 mutant mice have increased susceptibility to hyperoxic lung injury. Search for downstream effector genes regulated by Nrf2.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE495", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS248", "description": "Nrf2 mutant", "sample_id": [ "GSM4117", "GSM4120" ], "type": "strain", "id": "GDS248_1" }, { "dataset_id": "GDS248", "description": "wild type", "sample_id": [ "GSM4112", "GSM4115", "GSM4122", "GSM4125", "GSM4128", "GSM4131", "GSM4134", "GSM4137" ], "type": "strain", "id": "GDS248_2" }, { "dataset_id": "GDS248", "description": "normal oxygen", "sample_id": [ "GSM4112", "GSM4115", "GSM4117", "GSM4120" ], "type": "protocol", "id": "GDS248_3" }, { "dataset_id": "GDS248", "description": "100% oxygen", "sample_id": [ "GSM4122", "GSM4125", "GSM4128", "GSM4131", "GSM4134", "GSM4137" ], "type": "protocol", "id": "GDS248_4" }, { "dataset_id": "GDS248", "description": "0 hour", "sample_id": [ "GSM4112", "GSM4115", "GSM4117", "GSM4120" ], "type": "time", "id": "GDS248_5" }, { "dataset_id": "GDS248", "description": "24 hour", "sample_id": [ "GSM4122", "GSM4125" ], "type": "time", "id": "GDS248_6" }, { "dataset_id": "GDS248", "description": "48 hour", "sample_id": [ "GSM4128", "GSM4131" ], "type": "time", "id": "GDS248_7" }, { "dataset_id": "GDS248", "description": "72 hour", "sample_id": [ "GSM4134", "GSM4137" ], "type": "time", "id": "GDS248_8" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS248", "version": 1.0, "instances": "10", "variables": 9257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS248.tab", "compression": "gz" } ], [ [ "GDS2480.tab" ], { "title": "Lipopolysaccharide and chitin oligosaccharide effect on rice cells", "description": "Analysis of rice cells treated with lipopolysaccharide or N-acetylchitooctaose. These agents are pathogen-associated molecular pattern (PAMP) molecules important in the innate immune response. Results provide insight into the cellular response to PAMP molecules.", "type": "Expression profiling by array", "pubmed_id": "17018557", "platform": "GPL892", "platform_organism": "Oryza sativa Japonica Group", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log10 ratio", "reference_series": "GSE5906", "order": "none", "update_date": "Dec 13 2006", "subsets": [ { "dataset_id": "GDS2480", "description": "lipopolysaccharide", "sample_id": [ "GSM137314", "GSM137315" ], "type": "agent", "id": "GDS2480_1" }, { "dataset_id": "GDS2480", "description": "N-acetylchitooctaose", "sample_id": [ "GSM137316", "GSM137317" ], "type": "agent", "id": "GDS2480_2" } ], "taxid": "4530", "genes": 19703, "aggregation_function": "mean", "name": "GDS2480", "version": 1.0, "instances": "4", "variables": 19705, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2480.tab", "compression": "gz" } ], [ [ "GDS2482.tab" ], { "title": "Ras-associated binding protein 3A mutations effect on brain cortices and hippocampi (MG-430A)", "description": "Analysis of brain cortices and hippocampi of ras-associated binding protein (Rab) 3A D77G point or knockout mutants. Rab3a is a neuronal GTP-binding protein that binds synaptic vesicles and regulates synaptic transmission. The D77G point mutant exhibits anomalies in circadian behavior.", "type": "Expression profiling by array", "pubmed_id": "16734774", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE6527", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2482", "description": "litter 1", "sample_id": [ "GSM150266", "GSM150267", "GSM150268", "GSM150269", "GSM150270", "GSM150271", "GSM150284", "GSM150285", "GSM150286", "GSM150287", "GSM150288", "GSM150289" ], "type": "other", "id": "GDS2482_1" }, { "dataset_id": "GDS2482", "description": "litter 2", "sample_id": [ "GSM150272", "GSM150273", "GSM150274", "GSM150275", "GSM150276", "GSM150277", "GSM150278", "GSM150279", "GSM150280", "GSM150281", "GSM150282", "GSM150283", "GSM150290", "GSM150291", "GSM150292", "GSM150293", "GSM150294", "GSM150295", "GSM150296", "GSM150297", "GSM150298", "GSM150299", "GSM150300", "GSM150301" ], "type": "other", "id": "GDS2482_2" }, { "dataset_id": "GDS2482", "description": "wild type", "sample_id": [ "GSM150266", "GSM150267", "GSM150268", "GSM150272", "GSM150273", "GSM150274", "GSM150275", "GSM150276", "GSM150277", "GSM150284", "GSM150285", "GSM150286", "GSM150290", "GSM150291", "GSM150292", "GSM150293", "GSM150294", "GSM150295" ], "type": "genotype/variation", "id": "GDS2482_3" }, { "dataset_id": "GDS2482", "description": "rab3a D77G mutant", "sample_id": [ "GSM150269", "GSM150270", "GSM150271", "GSM150287", "GSM150288", "GSM150289" ], "type": "genotype/variation", "id": "GDS2482_4" }, { "dataset_id": "GDS2482", "description": "rab3a knockout", "sample_id": [ "GSM150278", "GSM150279", "GSM150280", "GSM150281", "GSM150282", "GSM150283", "GSM150296", "GSM150297", "GSM150298", "GSM150299", "GSM150300", "GSM150301" ], "type": "genotype/variation", "id": "GDS2482_5" }, { "dataset_id": "GDS2482", "description": "cortex", "sample_id": [ "GSM150266", "GSM150267", "GSM150268", "GSM150269", "GSM150270", "GSM150271", "GSM150272", "GSM150273", "GSM150274", "GSM150275", "GSM150276", "GSM150277", "GSM150278", "GSM150279", "GSM150280", "GSM150281", "GSM150282", "GSM150283" ], "type": "tissue", "id": "GDS2482_6" }, { "dataset_id": "GDS2482", "description": "hippocampus", "sample_id": [ "GSM150284", "GSM150285", "GSM150286", "GSM150287", "GSM150288", "GSM150289", "GSM150290", "GSM150291", "GSM150292", "GSM150293", "GSM150294", "GSM150295", "GSM150296", "GSM150297", "GSM150298", "GSM150299", "GSM150300", "GSM150301" ], "type": "tissue", "id": "GDS2482_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2482", "version": 1.0, "instances": "36", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2482.tab", "compression": "gz" } ], [ [ "GDS2483.tab" ], { "title": "Ras-associated binding protein 3A mutations effect on brain cortices and hippocampi (MG-430B)", "description": "Analysis of brain cortices and hippocampi of ras-associated binding protein (Rab) 3A D77G point or knockout mutants. Rab3a is a neuronal GTP-binding protein that binds synaptic vesicles and regulates synaptic transmission. The D77G point mutant exhibits anomalies in circadian behavior.", "type": "Expression profiling by array", "pubmed_id": "16734774", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE6527", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2483", "description": "litter 1", "sample_id": [ "GSM150302", "GSM150303", "GSM150304", "GSM150305", "GSM150306", "GSM150307", "GSM150320", "GSM150321", "GSM150322", "GSM150323", "GSM150324", "GSM150325" ], "type": "other", "id": "GDS2483_1" }, { "dataset_id": "GDS2483", "description": "litter 2", "sample_id": [ "GSM150308", "GSM150309", "GSM150310", "GSM150311", "GSM150312", "GSM150313", "GSM150314", "GSM150315", "GSM150316", "GSM150317", "GSM150318", "GSM150319", "GSM150326", "GSM150327", "GSM150328", "GSM150329", "GSM150330", "GSM150331", "GSM150332", "GSM150333", "GSM150334", "GSM150335", "GSM150336", "GSM150337" ], "type": "other", "id": "GDS2483_2" }, { "dataset_id": "GDS2483", "description": "wild type", "sample_id": [ "GSM150302", "GSM150303", "GSM150304", "GSM150308", "GSM150309", "GSM150310", "GSM150311", "GSM150312", "GSM150313", "GSM150320", "GSM150321", "GSM150322", "GSM150326", "GSM150327", "GSM150328", "GSM150329", "GSM150330", "GSM150331" ], "type": "genotype/variation", "id": "GDS2483_3" }, { "dataset_id": "GDS2483", "description": "rab3a D77G mutant", "sample_id": [ "GSM150305", "GSM150306", "GSM150307", "GSM150323", "GSM150324", "GSM150325" ], "type": "genotype/variation", "id": "GDS2483_4" }, { "dataset_id": "GDS2483", "description": "rab3a knockout", "sample_id": [ "GSM150314", "GSM150315", "GSM150316", "GSM150317", "GSM150318", "GSM150319", "GSM150332", "GSM150333", "GSM150334", "GSM150335", "GSM150336", "GSM150337" ], "type": "genotype/variation", "id": "GDS2483_5" }, { "dataset_id": "GDS2483", "description": "cortex", "sample_id": [ "GSM150302", "GSM150303", "GSM150304", "GSM150305", "GSM150306", "GSM150307", "GSM150308", "GSM150309", "GSM150310", "GSM150311", "GSM150312", "GSM150313", "GSM150314", "GSM150315", "GSM150316", "GSM150317", "GSM150318", "GSM150319" ], "type": "tissue", "id": "GDS2483_6" }, { "dataset_id": "GDS2483", "description": "hippocampus", "sample_id": [ "GSM150320", "GSM150321", "GSM150322", "GSM150323", "GSM150324", "GSM150325", "GSM150326", "GSM150327", "GSM150328", "GSM150329", "GSM150330", "GSM150331", "GSM150332", "GSM150333", "GSM150334", "GSM150335", "GSM150336", "GSM150337" ], "type": "tissue", "id": "GDS2483_7" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2483", "version": 1.0, "instances": "36", "variables": 16843, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2483.tab", "compression": "gz" } ], [ [ "GDS2484.tab" ], { "title": "Dermal lymphatic endothelial cell response to tumor necrosis factor alpha", "description": "Analysis of dermal lymphatic endothelial cells treated with tumor necrosis factor alpha to define inflammation-induced changes. Results provide insight into the mechanisms regulating the transmigration of leukocytes from inflamed skin across the lymphatic vessel endothelium into lymph nodes.", "type": "Expression profiling by array", "pubmed_id": "17116732", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE6257", "order": "none", "update_date": "Dec 18 2006", "subsets": [ { "dataset_id": "GDS2484", "description": "control", "sample_id": [ "GSM143717", "GSM143898", "GSM143900" ], "type": "agent", "id": "GDS2484_1" }, { "dataset_id": "GDS2484", "description": "tumor necrosis factor alpha", "sample_id": [ "GSM143907", "GSM143910", "GSM143914" ], "type": "agent", "id": "GDS2484_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2484", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2484.tab", "compression": "gz" } ], [ [ "GDS2485.tab" ], { "title": "Alcohol sensitive and tolerant populations", "description": "Analysis of alcohol-sensitive Canton S animals immediately following ethanol exposure and a population of Canton S animals that developed tolerance 2 hours after ethanol exposure. Results provide insight into the underlying cellular and physiological mechanisms that respond to alcohol exposure.", "type": "Expression profiling by array", "pubmed_id": "17054780", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE5382", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2485", "description": "untread", "sample_id": [ "GSM106918", "GSM122994", "GSM123002", "GSM123003", "GSM123007" ], "type": "agent", "id": "GDS2485_1" }, { "dataset_id": "GDS2485", "description": "alcohol", "sample_id": [ "GSM123065", "GSM123066", "GSM123067", "GSM123068", "GSM123069", "GSM123070", "GSM123071", "GSM123072", "GSM123073", "GSM123074" ], "type": "agent", "id": "GDS2485_2" }, { "dataset_id": "GDS2485", "description": "sensitive", "sample_id": [ "GSM106918", "GSM122994", "GSM123002", "GSM123003", "GSM123007", "GSM123065", "GSM123066", "GSM123067", "GSM123068", "GSM123069" ], "type": "strain", "id": "GDS2485_3" }, { "dataset_id": "GDS2485", "description": "tolerant", "sample_id": [ "GSM123070", "GSM123071", "GSM123072", "GSM123073", "GSM123074" ], "type": "strain", "id": "GDS2485_4" }, { "dataset_id": "GDS2485", "description": "control", "sample_id": [ "GSM106918", "GSM122994", "GSM123002", "GSM123003", "GSM123007" ], "type": "protocol", "id": "GDS2485_5" }, { "dataset_id": "GDS2485", "description": "immediately after exposure", "sample_id": [ "GSM123065", "GSM123066", "GSM123067", "GSM123068", "GSM123069" ], "type": "protocol", "id": "GDS2485_6" }, { "dataset_id": "GDS2485", "description": "2 hours after exposure", "sample_id": [ "GSM123070", "GSM123071", "GSM123072", "GSM123073", "GSM123074" ], "type": "protocol", "id": "GDS2485_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2485", "version": 1.0, "instances": "15", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2485.tab", "compression": "gz" } ], [ [ "GDS2486.tab" ], { "title": "Small airway epithelium response to cigarette smoking", "description": "Analysis of small airway epithelial cells of phenotypically normal smokers. The earliest morphologic evidence of changes in the airways associated with chronic cigarette smoking is in the small airways. Results provide insight into how smoking modifies small airway structure and function.", "type": "Expression profiling by array", "pubmed_id": [ "17115125", "19106307" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE4498", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2486", "description": "non-smoker", "sample_id": [ "GSM101095", "GSM101096", "GSM101097", "GSM101098", "GSM101099", "GSM101100", "GSM101101", "GSM101102", "GSM101103", "GSM101104", "GSM101105", "GSM101106" ], "type": "stress", "id": "GDS2486_1" }, { "dataset_id": "GDS2486", "description": "smoker", "sample_id": [ "GSM101107", "GSM101108", "GSM101109", "GSM101110", "GSM101111", "GSM101112", "GSM101113", "GSM101114", "GSM101115", "GSM101116" ], "type": "stress", "id": "GDS2486_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2486", "version": 1.0, "instances": "22", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2486.tab", "compression": "gz" } ], [ [ "GDS2487.tab" ], { "title": "p38 mitogen-activated protein kinase overexpression effect on the heart", "description": "Analysis of left heart ventricles of transgenics overexpressing the mitogen-activated protein kinase (MAPK) p38 in their hearts. p38 is involved in the pathophysiology of inflammatory diseases. Results provide insight into the role of p38 in the heart.", "type": "Expression profiling by array", "pubmed_id": "16873723", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE3866", "order": "none", "update_date": "Dec 19 2006", "subsets": [ { "dataset_id": "GDS2487", "description": "control", "sample_id": [ "GSM88341", "GSM88342", "GSM88343", "GSM88344", "GSM88345" ], "type": "protocol", "id": "GDS2487_1" }, { "dataset_id": "GDS2487", "description": "p38 overexpression", "sample_id": [ "GSM88346", "GSM88348", "GSM88349", "GSM88350", "GSM88352" ], "type": "protocol", "id": "GDS2487_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2487", "version": 1.0, "instances": "10", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2487.tab", "compression": "gz" } ], [ [ "GDS2489.tab" ], { "title": "Large airway epithelium response to cigarette smoking (HuGeneFL)", "description": "Analysis of large airway epithelial cells of phenotypically normal smokers. Lung cancer tumors exhibit neuroendocrine properties, and chronic smokers have increased numbers of neuroendocrine cells. Results provide insight into the effect of cigarette smoking on neuroendocrine cells.", "type": "Expression profiling by array", "pubmed_id": "17108109", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE5056", "order": "none", "update_date": "Dec 19 2006", "subsets": [ { "dataset_id": "GDS2489", "description": "control", "sample_id": [ "GSM114034", "GSM114035", "GSM114036", "GSM114037", "GSM114038", "GSM114039", "GSM114040", "GSM114041", "GSM114042", "GSM114043", "GSM114044", "GSM114045", "GSM114046", "GSM114047", "GSM114048", "GSM114049", "GSM114050", "GSM114051" ], "type": "stress", "id": "GDS2489_1" }, { "dataset_id": "GDS2489", "description": "cigeratte smoking", "sample_id": [ "GSM114052", "GSM114053", "GSM114054", "GSM114055", "GSM114056", "GSM114057", "GSM114058", "GSM114059", "GSM114060", "GSM114061", "GSM114062", "GSM114063", "GSM114064", "GSM114065", "GSM114066", "GSM114067", "GSM114068", "GSM114069", "GSM114070", "GSM114071", "GSM114072", "GSM114073", "GSM114074", "GSM114075", "GSM114076", "GSM114077" ], "type": "stress", "id": "GDS2489_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS2489", "version": 1.0, "instances": "44", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2489.tab", "compression": "gz" } ], [ [ "GDS249.tab" ], { "title": "Hyperoxic lung injury (U74Cv2)", "description": "Lung tissue from wild type and Nrf2 knock out mice examined after treatment with 100% oxygen to induce injury. Nrf2 mutant mice have increased susceptibility to hyperoxic lung injury. Search for downstream effector genes regulated by Nrf2.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE495", "order": "none", "update_date": "Jul 01 2003", "subsets": [ { "dataset_id": "GDS249", "description": "Nrf2 mutant", "sample_id": [ "GSM4118", "GSM4121" ], "type": "strain", "id": "GDS249_1" }, { "dataset_id": "GDS249", "description": "wild type", "sample_id": [ "GSM4113", "GSM4116", "GSM4123", "GSM4126", "GSM4129", "GSM4132", "GSM4135", "GSM4138" ], "type": "strain", "id": "GDS249_2" }, { "dataset_id": "GDS249", "description": "normal oxygen", "sample_id": [ "GSM4118", "GSM4121", "GSM4113", "GSM4116" ], "type": "protocol", "id": "GDS249_3" }, { "dataset_id": "GDS249", "description": "100% oxygen", "sample_id": [ "GSM4123", "GSM4126", "GSM4129", "GSM4132", "GSM4135", "GSM4138" ], "type": "protocol", "id": "GDS249_4" }, { "dataset_id": "GDS249", "description": "0 hour", "sample_id": [ "GSM4118", "GSM4121", "GSM4113", "GSM4116" ], "type": "time", "id": "GDS249_5" }, { "dataset_id": "GDS249", "description": "24 hour", "sample_id": [ "GSM4123", "GSM4126" ], "type": "time", "id": "GDS249_6" }, { "dataset_id": "GDS249", "description": "48 hour", "sample_id": [ "GSM4129", "GSM4132" ], "type": "time", "id": "GDS249_7" }, { "dataset_id": "GDS249", "description": "72 hour", "sample_id": [ "GSM4135", "GSM4138" ], "type": "time", "id": "GDS249_8" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS249", "version": 1.0, "instances": "10", "variables": 9980, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS249.tab", "compression": "gz" } ], [ [ "GDS2490.tab" ], { "title": "Large airway epithelium response to cigarette smoking (HG-133A)", "description": "Analysis of large airway epithelial cells of phenotypically normal smokers. Lung cancer tumors exhibit neuroendocrine properties, and chronic smokers have increased numbers of neuroendocrine cells. Results provide insight into the effect of cigarette smoking on neuroendocrine cells.", "type": "Expression profiling by array", "pubmed_id": "17108109", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE5057", "order": "none", "update_date": "Dec 19 2006", "subsets": [ { "dataset_id": "GDS2490", "description": "control", "sample_id": [ "GSM114084", "GSM114085", "GSM114086", "GSM114087", "GSM114088" ], "type": "stress", "id": "GDS2490_1" }, { "dataset_id": "GDS2490", "description": "cigarette smoking", "sample_id": [ "GSM114078", "GSM114079", "GSM114080", "GSM114081", "GSM114082", "GSM114083" ], "type": "stress", "id": "GDS2490_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2490", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2490.tab", "compression": "gz" } ], [ [ "GDS2491.tab" ], { "title": "Large airway epithelium response to cigarette smoking (HG-U133 2.0)", "description": "Analysis of large airway epithelial cells of phenotypically normal smokers. Lung cancer tumors exhibit neuroendocrine properties, and chronic smokers have increased numbers of neuroendocrine cells. Results provide insight into the effect of cigarette smoking on neuroendocrine cells.", "type": "Expression profiling by array", "pubmed_id": "17108109", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5059", "order": "none", "update_date": "Dec 19 2006", "subsets": [ { "dataset_id": "GDS2491", "description": "control", "sample_id": [ "GSM114106", "GSM114107", "GSM114108", "GSM114109" ], "type": "stress", "id": "GDS2491_1" }, { "dataset_id": "GDS2491", "description": "cigarette smoking", "sample_id": [ "GSM114110", "GSM114111", "GSM114112", "GSM114113", "GSM114114" ], "type": "stress", "id": "GDS2491_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2491", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2491.tab", "compression": "gz" } ], [ [ "GDS2493.tab" ], { "title": "Glucocorticoid sensitive and resistant acute lymphoblastic leukemia samples", "description": "Analysis of pretreatment acute lymphoblastic leukemia samples that are either sensitive or resistant to glucocorticoid (GC)-induced apoptosis in vitro. Results used to search a database of expression profiles of pharmacologic treatment of cells for small molecules that reverse the resistance to GCs.", "type": "Expression profiling by array", "pubmed_id": "17010674", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE5820", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2493", "description": "glucorticoid sensitive", "sample_id": [ "GSM135892", "GSM135893", "GSM135894", "GSM135945", "GSM135946", "GSM135947", "GSM135948", "GSM135949", "GSM135950", "GSM135951", "GSM135952", "GSM135953", "GSM135954" ], "type": "disease state", "id": "GDS2493_1" }, { "dataset_id": "GDS2493", "description": "glucorticoid resistant", "sample_id": [ "GSM135955", "GSM135956", "GSM135957", "GSM135958", "GSM135959", "GSM135960", "GSM135961", "GSM135962", "GSM135963", "GSM135964", "GSM135965", "GSM135966", "GSM135967", "GSM135968", "GSM135969", "GSM135970" ], "type": "disease state", "id": "GDS2493_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2493", "version": 1.0, "instances": "29", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2493.tab", "compression": "gz" } ], [ [ "GDS2494.tab" ], { "title": "Rapamycin effect on a glucorticoid-resistant T cell lymphoblastic leukemia cell line: time course", "description": "Analysis of the glucocorticoid (GC) resistant T cell lymphoblastic leukemia cell line CEM-c1 following treatment with rapamycin for 3 or 24 hours. Results compared to a GC sensitivity expression signature. Results provide insight into the feasibility of using rapamycin to reverse GC resistance.", "type": "Expression profiling by array", "pubmed_id": "17010674", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5824", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2494", "description": "DMSO", "sample_id": [ "GSM136055", "GSM136056", "GSM136057" ], "type": "agent", "id": "GDS2494_1" }, { "dataset_id": "GDS2494", "description": "rapamycin", "sample_id": [ "GSM136058", "GSM136059", "GSM136060", "GSM136064", "GSM136065", "GSM136066" ], "type": "agent", "id": "GDS2494_2" }, { "dataset_id": "GDS2494", "description": "control", "sample_id": [ "GSM136055", "GSM136056", "GSM136057" ], "type": "time", "id": "GDS2494_3" }, { "dataset_id": "GDS2494", "description": "3 h", "sample_id": [ "GSM136064", "GSM136065", "GSM136066" ], "type": "time", "id": "GDS2494_4" }, { "dataset_id": "GDS2494", "description": "24 h", "sample_id": [ "GSM136058", "GSM136059", "GSM136060" ], "type": "time", "id": "GDS2494_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2494", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2494.tab", "compression": "gz" } ], [ [ "GDS2495.tab" ], { "title": "Airway epithelium response to injury: time course", "description": "Analysis of airway epithelia from healthy individuals 7 and 14 days following injury by epithelial denudation. Results provide insight into the molecular mechanisms underlying airway epithelial repair.", "type": "Expression profiling by array", "pubmed_id": "17164391", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE5372", "order": "none", "update_date": "Dec 20 2006", "subsets": [ { "dataset_id": "GDS2495", "description": "non-smoker", "sample_id": [ "GSM122528", "GSM122531", "GSM122539", "GSM122540", "GSM122541", "GSM122542", "GSM122543", "GSM122544", "GSM122546" ], "type": "other", "id": "GDS2495_1" }, { "dataset_id": "GDS2495", "description": "smoker", "sample_id": [ "GSM122527", "GSM122529", "GSM122530", "GSM122532", "GSM122533", "GSM122534", "GSM122535", "GSM122536", "GSM122537", "GSM122538", "GSM122545", "GSM122547", "GSM122548" ], "type": "other", "id": "GDS2495_2" }, { "dataset_id": "GDS2495", "description": "S1", "sample_id": [ "GSM122527", "GSM122529" ], "type": "individual", "id": "GDS2495_3" }, { "dataset_id": "GDS2495", "description": "S2", "sample_id": [ "GSM122530", "GSM122532" ], "type": "individual", "id": "GDS2495_4" }, { "dataset_id": "GDS2495", "description": "NS1", "sample_id": [ "GSM122528", "GSM122531" ], "type": "individual", "id": "GDS2495_5" }, { "dataset_id": "GDS2495", "description": "S3", "sample_id": [ "GSM122533", "GSM122535", "GSM122536", "GSM122538" ], "type": "individual", "id": "GDS2495_6" }, { "dataset_id": "GDS2495", "description": "S4", "sample_id": [ "GSM122534", "GSM122537" ], "type": "individual", "id": "GDS2495_7" }, { "dataset_id": "GDS2495", "description": "NS2", "sample_id": [ "GSM122539", "GSM122540" ], "type": "individual", "id": "GDS2495_8" }, { "dataset_id": "GDS2495", "description": "NS3", "sample_id": [ "GSM122541", "GSM122542", "GSM122543" ], "type": "individual", "id": "GDS2495_9" }, { "dataset_id": "GDS2495", "description": "NS4", "sample_id": [ "GSM122544", "GSM122546" ], "type": "individual", "id": "GDS2495_10" }, { "dataset_id": "GDS2495", "description": "S5", "sample_id": [ "GSM122545", "GSM122547", "GSM122548" ], "type": "individual", "id": "GDS2495_11" }, { "dataset_id": "GDS2495", "description": "uninjured", "sample_id": [ "GSM122527", "GSM122528", "GSM122530", "GSM122533", "GSM122534", "GSM122535", "GSM122539", "GSM122541", "GSM122544", "GSM122545" ], "type": "stress", "id": "GDS2495_12" }, { "dataset_id": "GDS2495", "description": "injured", "sample_id": [ "GSM122537", "GSM122538", "GSM122543", "GSM122546", "GSM122548", "GSM122529", "GSM122531", "GSM122532", "GSM122536", "GSM122540", "GSM122542", "GSM122547" ], "type": "stress", "id": "GDS2495_13" }, { "dataset_id": "GDS2495", "description": "0 d", "sample_id": [ "GSM122527", "GSM122528", "GSM122530", "GSM122533", "GSM122534", "GSM122535", "GSM122539", "GSM122541", "GSM122544", "GSM122545" ], "type": "time", "id": "GDS2495_14" }, { "dataset_id": "GDS2495", "description": "7 d", "sample_id": [ "GSM122529", "GSM122531", "GSM122532", "GSM122536", "GSM122540", "GSM122542", "GSM122547" ], "type": "time", "id": "GDS2495_15" }, { "dataset_id": "GDS2495", "description": "14 d", "sample_id": [ "GSM122537", "GSM122538", "GSM122543", "GSM122546", "GSM122548" ], "type": "time", "id": "GDS2495_16" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2495", "version": 1.0, "instances": "22", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2495.tab", "compression": "gz" } ], [ [ "GDS2496.tab" ], { "title": "Lung response to carcinogens that test positive in two-year rodent bioassays", "description": "Analysis of lungs of B6C3F1 females 13 weeks following treatment with chemicals that test positive in two-year rodent cancer bioassays. Results provide insight into the feasibility of using expression signatures, as alternatives to standard two-year bioassays, to identify chemical carcinogens.", "type": "Expression profiling by array", "pubmed_id": "17114358", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE5127", "order": "none", "update_date": "Dec 20 2006", "subsets": [ { "dataset_id": "GDS2496", "description": "Feed control", "sample_id": [ "GSM115665", "GSM115666", "GSM115667" ], "type": "agent", "id": "GDS2496_1" }, { "dataset_id": "GDS2496", "description": "Corn oil vehicle control", "sample_id": [ "GSM115662", "GSM115663", "GSM115664" ], "type": "agent", "id": "GDS2496_2" }, { "dataset_id": "GDS2496", "description": "Pentachloronitrobenzene", "sample_id": [ "GSM115677", "GSM115678", "GSM115679" ], "type": "agent", "id": "GDS2496_3" }, { "dataset_id": "GDS2496", "description": "N-(1-naphthyl)ethylenediamine dihydrochloride", "sample_id": [ "GSM115668", "GSM115669", "GSM115670" ], "type": "agent", "id": "GDS2496_4" }, { "dataset_id": "GDS2496", "description": "2,3-Benzofuran", "sample_id": [ "GSM115674", "GSM115675", "GSM115676" ], "type": "agent", "id": "GDS2496_5" }, { "dataset_id": "GDS2496", "description": "1,5-Naphthalenediamine", "sample_id": [ "GSM115671", "GSM115672", "GSM115673" ], "type": "agent", "id": "GDS2496_6" }, { "dataset_id": "GDS2496", "description": "control", "sample_id": [ "GSM115665", "GSM115666", "GSM115667", "GSM115662", "GSM115663", "GSM115664" ], "type": "other", "id": "GDS2496_7" }, { "dataset_id": "GDS2496", "description": "negative lung carcinogen", "sample_id": [ "GSM115668", "GSM115669", "GSM115670", "GSM115677", "GSM115678", "GSM115679" ], "type": "other", "id": "GDS2496_8" }, { "dataset_id": "GDS2496", "description": "positive lung carcinogen", "sample_id": [ "GSM115671", "GSM115672", "GSM115673", "GSM115674", "GSM115675", "GSM115676" ], "type": "other", "id": "GDS2496_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2496", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2496.tab", "compression": "gz" } ], [ [ "GDS2497.tab" ], { "title": "Liver response to carcinogens that test positive in two-year rodent bioassays", "description": "Analysis of livers of B6C3F1 females 13 weeks following treatment with chemicals that test positive in two-year rodent cancer bioassays. Results provide insight into the feasibility of using expression signatures, as alternatives to standard two-year bioassays, to identify chemical carcinogens.", "type": "Expression profiling by array", "pubmed_id": "17114358", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE5128", "order": "none", "update_date": "Dec 20 2006", "subsets": [ { "dataset_id": "GDS2497", "description": "Feed control", "sample_id": [ "GSM115690", "GSM115691", "GSM115692" ], "type": "agent", "id": "GDS2497_1" }, { "dataset_id": "GDS2497", "description": "Corn oil vehicle control", "sample_id": [ "GSM115687", "GSM115688", "GSM115689" ], "type": "agent", "id": "GDS2497_2" }, { "dataset_id": "GDS2497", "description": "1,5-Naphthalenediamine", "sample_id": [ "GSM115693", "GSM115694", "GSM115695" ], "type": "agent", "id": "GDS2497_3" }, { "dataset_id": "GDS2497", "description": "2,3-Benzofuran", "sample_id": [ "GSM115680", "GSM115696", "GSM115697" ], "type": "agent", "id": "GDS2497_4" }, { "dataset_id": "GDS2497", "description": "N-(1-naphthyl)ethylenediamine dihydrochloride", "sample_id": [ "GSM115681", "GSM115682", "GSM115683" ], "type": "agent", "id": "GDS2497_5" }, { "dataset_id": "GDS2497", "description": "Pentachloronitrobenzene", "sample_id": [ "GSM115684", "GSM115685", "GSM115686" ], "type": "agent", "id": "GDS2497_6" }, { "dataset_id": "GDS2497", "description": "control", "sample_id": [ "GSM115690", "GSM115691", "GSM115692", "GSM115687", "GSM115688", "GSM115689" ], "type": "other", "id": "GDS2497_7" }, { "dataset_id": "GDS2497", "description": "negative liver carcinogen", "sample_id": [ "GSM115681", "GSM115682", "GSM115683", "GSM115684", "GSM115685", "GSM115686" ], "type": "other", "id": "GDS2497_8" }, { "dataset_id": "GDS2497", "description": "positive liver carcinogen", "sample_id": [ "GSM115693", "GSM115694", "GSM115695", "GSM115680", "GSM115696", "GSM115697" ], "type": "other", "id": "GDS2497_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2497", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2497.tab", "compression": "gz" } ], [ [ "GDS2498.tab" ], { "title": "TATA-binding protein Spt15 mutant response to ethanol and glucose stress", "description": "Analysis of spt15-300 mutant grown in conditions of ethanol and glucose stress. Mutant generated by global transcription machinery engineering (gTME) and bears 3 mutations in SPT15. Results provide insight into the applicability of gTME to alter cellular eukaryotic phenotypes.", "type": "Expression profiling by array", "pubmed_id": "17158319", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5185", "order": "none", "update_date": "Dec 20 2006", "subsets": [ { "dataset_id": "GDS2498", "description": "wild type", "sample_id": [ "GSM116815", "GSM116816", "GSM116817", "GSM116821", "GSM116822", "GSM116823" ], "type": "strain", "id": "GDS2498_1" }, { "dataset_id": "GDS2498", "description": "mutant spt15", "sample_id": [ "GSM116818", "GSM116819", "GSM116820", "GSM116824", "GSM116825", "GSM116826" ], "type": "strain", "id": "GDS2498_2" }, { "dataset_id": "GDS2498", "description": "0% EtOH, 20 g/L glucose", "sample_id": [ "GSM116815", "GSM116816", "GSM116817", "GSM116818", "GSM116819", "GSM116820" ], "type": "stress", "id": "GDS2498_3" }, { "dataset_id": "GDS2498", "description": "5% EtOH, 60 g/L glucose", "sample_id": [ "GSM116821", "GSM116822", "GSM116823", "GSM116824", "GSM116825", "GSM116826" ], "type": "stress", "id": "GDS2498_4" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS2498", "version": 1.0, "instances": "12", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2498.tab", "compression": "gz" } ], [ [ "GDS2499.tab" ], { "title": "Anti-cancer agent sapphyrin PCI-2050 effect on lung cancer cell line: dose response", "description": "Analysis of A549 lung cancer cells following treatment with anti-cancer agent sapphyrin PCI-2050 or transcription inhibitor actinomycin D. Hydrophilic sapphyrins localize to tumors, generate oxidative stress, and inhibit gene expression.", "type": "Expression profiling by array", "pubmed_id": "17233922", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6400", "order": "none", "update_date": "Feb 09 2007", "subsets": [ { "dataset_id": "GDS2499", "description": "Mannitol", "sample_id": [ "GSM147365", "GSM147366", "GSM147367" ], "type": "agent", "id": "GDS2499_1" }, { "dataset_id": "GDS2499", "description": "Actinomycin D", "sample_id": [ "GSM147099", "GSM147363", "GSM147364" ], "type": "agent", "id": "GDS2499_2" }, { "dataset_id": "GDS2499", "description": "Sapphyrin PCI-2050", "sample_id": [ "GSM147368", "GSM147369", "GSM147370", "GSM147520", "GSM147521", "GSM147522" ], "type": "agent", "id": "GDS2499_3" }, { "dataset_id": "GDS2499", "description": "5 ug/ml", "sample_id": [ "GSM147099", "GSM147363", "GSM147364" ], "type": "dose", "id": "GDS2499_4" }, { "dataset_id": "GDS2499", "description": "5%", "sample_id": [ "GSM147365", "GSM147366", "GSM147367" ], "type": "dose", "id": "GDS2499_5" }, { "dataset_id": "GDS2499", "description": "1.25 uM", "sample_id": [ "GSM147368", "GSM147369", "GSM147370" ], "type": "dose", "id": "GDS2499_6" }, { "dataset_id": "GDS2499", "description": "2.5 uM", "sample_id": [ "GSM147520", "GSM147521", "GSM147522" ], "type": "dose", "id": "GDS2499_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2499", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2499.tab", "compression": "gz" } ], [ [ "GDS250.tab" ], { "title": "Alveoli septation inhibition and protection", "description": "Analysis of how dexamethasone (DEX) inhibits normal lung septation and alveoli formation, and mechanism by which retinoic acid (ATRA) protects against DEX. Three day old mice treated with ATRA or control. On day 4, half of each group administered DEX.", "type": "Expression profiling by array", "pubmed_id": "14607780", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE484", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS250", "description": "dexamethasone", "sample_id": [ "GSM4139", "GSM4140" ], "type": "protocol", "id": "GDS250_1" }, { "dataset_id": "GDS250", "description": "control", "sample_id": [ "GSM4141", "GSM4142" ], "type": "protocol", "id": "GDS250_2" }, { "dataset_id": "GDS250", "description": "retinoic acid", "sample_id": [ "GSM4143", "GSM4144" ], "type": "protocol", "id": "GDS250_3" }, { "dataset_id": "GDS250", "description": "dexamethasone and retinoic acid", "sample_id": [ "GSM4145", "GSM4146" ], "type": "protocol", "id": "GDS250_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS250", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS250.tab", "compression": "gz" } ], [ [ "GDS2501.tab" ], { "title": "B-cell chronic lymphocytic leukemia cell type and prognosis", "description": "Analysis of B-cell chronic lymphocytic leukemia (B-CLL) cells that express or do not express zeta-associated protein (ZAP-70) and CD38. The prognosis of patients with ZAP-70-CD38- B-CLL cells is good, those with ZAP-70+CD38+ B-CLL cells is poor.", "type": "Expression profiling by array", "pubmed_id": "16932341", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE4392", "order": "none", "update_date": "Apr 18 2008", "subsets": [ { "dataset_id": "GDS2501", "description": "ZAP-70-CD38-", "sample_id": [ "GSM99339", "GSM99340", "GSM99341", "GSM99342", "GSM99343", "GSM99344", "GSM99345", "GSM99346" ], "type": "cell type", "id": "GDS2501_1" }, { "dataset_id": "GDS2501", "description": "ZAP-70+CD38+", "sample_id": [ "GSM99347", "GSM99348", "GSM99349", "GSM99350", "GSM99351", "GSM99352", "GSM99353", "GSM99354" ], "type": "cell type", "id": "GDS2501_2" }, { "dataset_id": "GDS2501", "description": "good prognosis", "sample_id": [ "GSM99339", "GSM99340", "GSM99341", "GSM99342", "GSM99343", "GSM99344", "GSM99345", "GSM99346" ], "type": "other", "id": "GDS2501_3" }, { "dataset_id": "GDS2501", "description": "poor prognosis", "sample_id": [ "GSM99347", "GSM99348", "GSM99349", "GSM99350", "GSM99351", "GSM99352", "GSM99353", "GSM99354" ], "type": "other", "id": "GDS2501_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2501", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2501.tab", "compression": "gz" } ], [ [ "GDS2504.tab" ], { "title": "Female reproductive tract response to male-derived molecules and sperm: time course", "description": "Analysis of the reproductive tracts of females up to 24 hours after mating. Male-derived accessory gland proteins transferred to females during mating affect reproductive physiology. Results provide insight into the response of female reproductive tissues to male-derived molecules and sperm.", "type": "Expression profiling by array", "pubmed_id": "16798875", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE5012", "order": "none", "update_date": "Dec 28 2006", "subsets": [ { "dataset_id": "GDS2504", "description": "control", "sample_id": [ "GSM112931", "GSM112935", "GSM112942", "GSM112943", "GSM112945" ], "type": "time", "id": "GDS2504_1" }, { "dataset_id": "GDS2504", "description": "0 h", "sample_id": [ "GSM112946", "GSM112947", "GSM112948", "GSM112949", "GSM112950", "GSM112952" ], "type": "time", "id": "GDS2504_2" }, { "dataset_id": "GDS2504", "description": "3 h", "sample_id": [ "GSM112962", "GSM112963", "GSM112964", "GSM112965" ], "type": "time", "id": "GDS2504_3" }, { "dataset_id": "GDS2504", "description": "6 h", "sample_id": [ "GSM112967", "GSM112968", "GSM112970" ], "type": "time", "id": "GDS2504_4" }, { "dataset_id": "GDS2504", "description": "24 h", "sample_id": [ "GSM112971", "GSM112972", "GSM113345" ], "type": "time", "id": "GDS2504_5" }, { "dataset_id": "GDS2504", "description": "unmated", "sample_id": [ "GSM112931", "GSM112935", "GSM112942", "GSM112943", "GSM112945" ], "type": "protocol", "id": "GDS2504_6" }, { "dataset_id": "GDS2504", "description": "mated", "sample_id": [ "GSM112946", "GSM112947", "GSM112948", "GSM112949", "GSM112950", "GSM112952", "GSM112962", "GSM112963", "GSM112964", "GSM112965", "GSM112967", "GSM112968", "GSM112970", "GSM112971", "GSM112972", "GSM113345" ], "type": "protocol", "id": "GDS2504_7" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2504", "version": 1.0, "instances": "21", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2504.tab", "compression": "gz" } ], [ [ "GDS2505.tab" ], { "title": "Transcription factor gcr1 null mutant response to various carbon sources", "description": "Analysis of gcr1 null mutant grown in glucose, galactose, or raffinose. Gcr1 is a transcription factor required for the normal glucose induction of G1 cyclin genes. Results provide insight into role of Gcr1 in coordinating cell cycle progression as extracellular conditions change.", "type": "Expression profiling by array", "pubmed_id": "17124610", "platform": "GPL2883", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10807", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE5027", "order": "none", "update_date": "Dec 28 2006", "subsets": [ { "dataset_id": "GDS2505", "description": "glucose", "sample_id": [ "GSM113603", "GSM113604", "GSM113605", "GSM113606" ], "type": "growth protocol", "id": "GDS2505_1" }, { "dataset_id": "GDS2505", "description": "galactose", "sample_id": [ "GSM113599", "GSM113600", "GSM113601", "GSM113602" ], "type": "growth protocol", "id": "GDS2505_2" }, { "dataset_id": "GDS2505", "description": "raffinose", "sample_id": [ "GSM113465", "GSM113466", "GSM113597", "GSM113598" ], "type": "growth protocol", "id": "GDS2505_3" } ], "taxid": "4932", "genes": 6250, "aggregation_function": "mean", "name": "GDS2505", "version": 1.0, "instances": "12", "variables": 6252, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2505.tab", "compression": "gz" } ], [ [ "GDS2506.tab" ], { "title": "Recurrent squamous cell carcinoma of the lung: primary tumor", "description": "Analysis of primary tumors from patients with squamous cell carcinoma (SCC) of the lung that recurred within 18 months of complete resection of the tumor. Results provide insight into the feasibility of using gene expression signatures for lung cancer prognosis.", "type": "Expression profiling by array", "pubmed_id": "17082175", "platform": "GPL3877", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23232", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "51", "value_type": "log2 ratio", "reference_series": "GSE5123", "order": "none", "update_date": "Jun 23 2016", "subsets": [ { "dataset_id": "GDS2506", "description": "no recurrent disease", "sample_id": [ "GSM115459", "GSM115460", "GSM115479", "GSM115480", "GSM115481", "GSM115482", "GSM115483", "GSM115484", "GSM115485", "GSM115486", "GSM115487", "GSM115488", "GSM115489", "GSM115490", "GSM115461", "GSM115462", "GSM115463", "GSM115464", "GSM115465", "GSM115466", "GSM115467", "GSM115468", "GSM115469", "GSM115470", "GSM115471", "GSM115472", "GSM115473", "GSM115474", "GSM115475", "GSM115476", "GSM115477", "GSM115478" ], "type": "disease state", "id": "GDS2506_1" }, { "dataset_id": "GDS2506", "description": "recurrent disease", "sample_id": [ "GSM115491", "GSM115492", "GSM115493", "GSM115494", "GSM115495", "GSM115496", "GSM115497", "GSM115498", "GSM115499", "GSM115500", "GSM115501", "GSM115502", "GSM115503", "GSM115504", "GSM115505", "GSM115506", "GSM115507", "GSM115508", "GSM115509" ], "type": "disease state", "id": "GDS2506_2" }, { "dataset_id": "GDS2506", "description": "N0 stage", "sample_id": [ "GSM115459", "GSM115460", "GSM115461", "GSM115462", "GSM115463", "GSM115464", "GSM115465", "GSM115466", "GSM115467", "GSM115468", "GSM115469", "GSM115470", "GSM115471", "GSM115472", "GSM115473", "GSM115474", "GSM115475", "GSM115476", "GSM115477", "GSM115478", "GSM115479", "GSM115480", "GSM115481", "GSM115482", "GSM115483", "GSM115491", "GSM115492", "GSM115493", "GSM115494", "GSM115495", "GSM115496", "GSM115497", "GSM115498" ], "type": "other", "id": "GDS2506_3" }, { "dataset_id": "GDS2506", "description": "N1 stage", "sample_id": [ "GSM115484", "GSM115485", "GSM115486", "GSM115487", "GSM115488", "GSM115489", "GSM115490", "GSM115499", "GSM115500", "GSM115501", "GSM115502", "GSM115503", "GSM115504", "GSM115505", "GSM115506", "GSM115507", "GSM115509" ], "type": "other", "id": "GDS2506_4" }, { "dataset_id": "GDS2506", "description": "N2 stage", "sample_id": [ "GSM115508" ], "type": "other", "id": "GDS2506_5" } ], "taxid": "9606", "genes": 19414, "aggregation_function": "mean", "name": "GDS2506", "version": 1.0, "instances": "51", "variables": 19417, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2506.tab", "compression": "gz" } ], [ [ "GDS2508.tab" ], { "title": "DNA damage effect", "description": "Analysis of cells exposed to the radiomimetic enediyne antibiotics calicheamicin, esperamicin A1, and neocarzinostatin. These enediynes bind specifically to DNA and generate single- and double-strand DNA breaks. Results provide insight into the response to DNA damage.", "type": "Expression profiling by array", "pubmed_id": "17163986", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE5301", "order": "none", "update_date": "May 11 2007", "subsets": [ { "dataset_id": "GDS2508", "description": "methanol", "sample_id": [ "GSM120137", "GSM120138", "GSM120139" ], "type": "agent", "id": "GDS2508_1" }, { "dataset_id": "GDS2508", "description": "gamma radiation", "sample_id": [ "GSM120143", "GSM120144", "GSM120145" ], "type": "agent", "id": "GDS2508_2" }, { "dataset_id": "GDS2508", "description": "calicheamicin", "sample_id": [ "GSM120128", "GSM120129", "GSM120130" ], "type": "agent", "id": "GDS2508_3" }, { "dataset_id": "GDS2508", "description": "esperamicin A1", "sample_id": [ "GSM120131", "GSM120132", "GSM120133" ], "type": "agent", "id": "GDS2508_4" }, { "dataset_id": "GDS2508", "description": "neocarzinostatin", "sample_id": [ "GSM120134", "GSM120135", "GSM120136" ], "type": "agent", "id": "GDS2508_5" }, { "dataset_id": "GDS2508", "description": "mock gamma", "sample_id": [ "GSM120140", "GSM120141", "GSM120142" ], "type": "agent", "id": "GDS2508_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2508", "version": 1.0, "instances": "18", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2508.tab", "compression": "gz" } ], [ [ "GDS2509.tab" ], { "title": "Wilson's disease model: liver", "description": "Analysis of livers of copper-transporting ATPase ATP7B null animals. Genetic inactivation of ATP7B causes Wilson\u2019s Disease (WD), a severe metabolic disorder associated with intracellular copper overload. Results provide insight into the initial events of copper-dependent liver pathology in WD.", "type": "Expression profiling by array", "pubmed_id": "17205981", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5348", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2509", "description": "wild type", "sample_id": [ "GSM121554", "GSM121555", "GSM121556" ], "type": "genotype/variation", "id": "GDS2509_1" }, { "dataset_id": "GDS2509", "description": "ATP7B null", "sample_id": [ "GSM121547", "GSM121550", "GSM121552" ], "type": "genotype/variation", "id": "GDS2509_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2509", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2509.tab", "compression": "gz" } ], [ [ "GDS251.tab" ], { "title": "Pulmonary fibrosis", "description": "Determination of genetic basis of sensitivity to pulmonary fibrosis induced by bleomycin by comparing susceptible (C57BL6/J) and resistant (Balb/c) strains. C57BL6/J experience inflammatory response then progressive lung disease, Balb/c do not.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE485", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS251", "description": "Balb/c", "sample_id": [ "GSM4147", "GSM4148", "GSM4149", "GSM4150", "GSM4151", "GSM4152", "GSM4153", "GSM4154", "GSM4155", "GSM4156", "GSM4157", "GSM4158" ], "type": "strain", "id": "GDS251_1" }, { "dataset_id": "GDS251", "description": "C57BL6/J", "sample_id": [ "GSM4159", "GSM4160", "GSM4161", "GSM4162", "GSM4163", "GSM4164", "GSM4165", "GSM4166", "GSM4167", "GSM4168", "GSM4169", "GSM4170" ], "type": "strain", "id": "GDS251_2" }, { "dataset_id": "GDS251", "description": "bleomycin", "sample_id": [ "GSM4147", "GSM4148", "GSM4149", "GSM4150", "GSM4151", "GSM4152", "GSM4159", "GSM4160", "GSM4161", "GSM4162", "GSM4163", "GSM4164" ], "type": "protocol", "id": "GDS251_3" }, { "dataset_id": "GDS251", "description": "saline", "sample_id": [ "GSM4153", "GSM4154", "GSM4155", "GSM4156", "GSM4157", "GSM4158", "GSM4165", "GSM4166", "GSM4167", "GSM4168", "GSM4169", "GSM4170" ], "type": "protocol", "id": "GDS251_4" }, { "dataset_id": "GDS251", "description": "24 hour", "sample_id": [ "GSM4161", "GSM4162", "GSM4167", "GSM4168", "GSM4149", "GSM4150", "GSM4155", "GSM4156" ], "type": "time", "id": "GDS251_5" }, { "dataset_id": "GDS251", "description": "72 hour", "sample_id": [ "GSM4163", "GSM4164", "GSM4169", "GSM4170", "GSM4151", "GSM4152", "GSM4157", "GSM4158" ], "type": "time", "id": "GDS251_6" }, { "dataset_id": "GDS251", "description": "14 day", "sample_id": [ "GSM4159", "GSM4160", "GSM4165", "GSM4166", "GSM4147", "GSM4148", "GSM4153", "GSM4154" ], "type": "time", "id": "GDS251_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS251", "version": 1.0, "instances": "24", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS251.tab", "compression": "gz" } ], [ [ "GDS2511.tab" ], { "title": "Brains of two strains (MG-U74A)", "description": "Comparison of whole brains from C57BL/6 and DBA/2 strains. These two strains differ in their preference for alcohol. Results provide insight into the molecular basis of this difference.", "type": "Expression profiling by array", "pubmed_id": "17010133", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE2502", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2511", "description": "C57BL/6", "sample_id": [ "GSM47514", "GSM47515", "GSM47516", "GSM47517", "GSM47518" ], "type": "strain", "id": "GDS2511_1" }, { "dataset_id": "GDS2511", "description": "DBA/2", "sample_id": [ "GSM47519", "GSM47520", "GSM47521", "GSM47522" ], "type": "strain", "id": "GDS2511_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2511", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2511.tab", "compression": "gz" } ], [ [ "GDS2513.tab" ], { "title": "Nicotinamide effect on thrombopoietin-induced megakaryocyte differentiation in vitro", "description": "Analysis of thrombopoietin-cultured CD34+ cells at various time points up to 5 days following treatment with nicotinamide. Thrombopoietin induces CD34+ cells to differentiate into megakaryocytes. Results provide insight into the effect of nicotinamide on megakaryocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "17054670", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log e ratio", "reference_series": "GSE4974", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2513", "description": "donor MK09", "sample_id": [ "GSM112271", "GSM112272", "GSM112273", "GSM112274", "GSM112275", "GSM112276", "GSM112277", "GSM112278", "GSM112279", "GSM112280", "GSM112281", "GSM112282", "GSM112283", "GSM112284" ], "type": "individual", "id": "GDS2513_1" }, { "dataset_id": "GDS2513", "description": "donor MK11", "sample_id": [ "GSM112285", "GSM112286", "GSM112287", "GSM112288", "GSM112289", "GSM112290", "GSM112291", "GSM112292", "GSM112293", "GSM112294", "GSM112295", "GSM112296", "GSM112297", "GSM112298" ], "type": "individual", "id": "GDS2513_2" }, { "dataset_id": "GDS2513", "description": "control", "sample_id": [ "GSM112271", "GSM112272", "GSM112285", "GSM112286" ], "type": "agent", "id": "GDS2513_3" }, { "dataset_id": "GDS2513", "description": "thrombopoietin", "sample_id": [ "GSM112273", "GSM112274", "GSM112275", "GSM112276", "GSM112277", "GSM112278", "GSM112287", "GSM112288", "GSM112289", "GSM112290", "GSM112291", "GSM112292" ], "type": "agent", "id": "GDS2513_4" }, { "dataset_id": "GDS2513", "description": "thrombopoietin and nicotinamide", "sample_id": [ "GSM112279", "GSM112280", "GSM112281", "GSM112282", "GSM112283", "GSM112284", "GSM112293", "GSM112294", "GSM112295", "GSM112296", "GSM112297", "GSM112298" ], "type": "agent", "id": "GDS2513_5" }, { "dataset_id": "GDS2513", "description": "0 d", "sample_id": [ "GSM112271", "GSM112272", "GSM112285", "GSM112286" ], "type": "time", "id": "GDS2513_6" }, { "dataset_id": "GDS2513", "description": "1 d", "sample_id": [ "GSM112273", "GSM112274", "GSM112279", "GSM112280", "GSM112287", "GSM112288", "GSM112293", "GSM112294" ], "type": "time", "id": "GDS2513_7" }, { "dataset_id": "GDS2513", "description": "3 d", "sample_id": [ "GSM112275", "GSM112276", "GSM112281", "GSM112282", "GSM112289", "GSM112290", "GSM112295", "GSM112296" ], "type": "time", "id": "GDS2513_8" }, { "dataset_id": "GDS2513", "description": "5 d", "sample_id": [ "GSM112277", "GSM112278", "GSM112283", "GSM112284", "GSM112291", "GSM112292", "GSM112297", "GSM112298" ], "type": "time", "id": "GDS2513_9" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS2513", "version": 1.0, "instances": "28", "variables": 18359, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2513.tab", "compression": "gz" } ], [ [ "GDS2514.tab" ], { "title": "Breast cancer formation in WAP-SVT/t transgenic animals", "description": "Analysis of mammary gland segments from WAP\u2013SVT/t transgenic animals. These animals selectively synthesize the SV40 T/t antigen in mammary gland epithelial (ME) cells and develop breast cancer after the first lactation. Results provide insight into the role of SV40 T/t antigen in tumor formation.", "type": "Expression profiling by array", "pubmed_id": "15662539", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6246", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2514", "description": "WAP-SVT/t transgenic animals", "sample_id": [ "GSM143903", "GSM143904", "GSM143906" ], "type": "disease state", "id": "GDS2514_1" }, { "dataset_id": "GDS2514", "description": "WAP-SVT/t breast tumors", "sample_id": [ "GSM143908", "GSM143909", "GSM143911" ], "type": "disease state", "id": "GDS2514_2" }, { "dataset_id": "GDS2514", "description": "normal NMRI animals", "sample_id": [ "GSM143330", "GSM143697", "GSM143891" ], "type": "disease state", "id": "GDS2514_3" }, { "dataset_id": "GDS2514", "description": "breast cancer cell lines", "sample_id": [ "GSM143913", "GSM143915", "GSM143916" ], "type": "disease state", "id": "GDS2514_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2514", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2514.tab", "compression": "gz" } ], [ [ "GDS2515.tab" ], { "title": "Transcriptional coactivator PGC-1beta hypomorphic mutation effect on the skeletal muscle", "description": "Analysis of quadriceps muscles of animals bearing a hypomorphic PGC-1beta mutation. PGC-1beta is a transcriptional coactivator that stimulates mitochondrial biogenesis and respiration of cells. Results provide insight into the function of PGC-1beta in the skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "17141629", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6210", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS2515", "description": "wild type", "sample_id": [ "GSM143409", "GSM143411", "GSM143412" ], "type": "genotype/variation", "id": "GDS2515_1" }, { "dataset_id": "GDS2515", "description": "PGC-1beta mutant", "sample_id": [ "GSM143413", "GSM143414", "GSM143415" ], "type": "genotype/variation", "id": "GDS2515_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2515", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2515.tab", "compression": "gz" } ], [ [ "GDS2516.tab" ], { "title": "Interferons effect on endothelial cells", "description": "Analysis of endothelial cells treated with interferon (IFN) alpha, beta, or gamma for 5 hours. The effect of IFNs on fibroblasts was also examined. Results provide insight into the molecular basis of the antiangiogenic activity exhibited by IFNs.", "type": "Expression profiling by array", "pubmed_id": [ "17202376", "19553003" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE3920", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS2516", "description": "control", "sample_id": [ "GSM89636", "GSM89639", "GSM89642", "GSM89643", "GSM89644", "GSM89654", "GSM89655", "GSM89656" ], "type": "agent", "id": "GDS2516_1" }, { "dataset_id": "GDS2516", "description": "interferon alpha", "sample_id": [ "GSM89637", "GSM89640", "GSM89645", "GSM89646", "GSM89647", "GSM89651", "GSM89652", "GSM89653" ], "type": "agent", "id": "GDS2516_2" }, { "dataset_id": "GDS2516", "description": "interferon beta", "sample_id": [ "GSM89638", "GSM89641" ], "type": "agent", "id": "GDS2516_3" }, { "dataset_id": "GDS2516", "description": "interferon gamma", "sample_id": [ "GSM89648", "GSM89649", "GSM89650", "GSM89657", "GSM89658" ], "type": "agent", "id": "GDS2516_4" }, { "dataset_id": "GDS2516", "description": "endothelial cells", "sample_id": [ "GSM89636", "GSM89637", "GSM89638", "GSM89639", "GSM89640", "GSM89641", "GSM89642", "GSM89643", "GSM89644", "GSM89645", "GSM89646", "GSM89647", "GSM89648", "GSM89649", "GSM89650" ], "type": "cell type", "id": "GDS2516_5" }, { "dataset_id": "GDS2516", "description": "fibroblasts", "sample_id": [ "GSM89651", "GSM89652", "GSM89653", "GSM89654", "GSM89655", "GSM89656", "GSM89657", "GSM89658" ], "type": "cell type", "id": "GDS2516_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2516", "version": 1.0, "instances": "23", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2516.tab", "compression": "gz" } ], [ [ "GDS2518.tab" ], { "title": "Psoriatic plaques", "description": "Analysis of uninvolved and lesional skin of 13 patients with plaque-type psoriasis. Psoriasis vulgaris is characterized by hyperproliferation and incomplete terminal differentiation of epidermal keratinocytes. Results provide insight into the molecular pathogenesis of psoriasis.", "type": "Expression profiling by array", "pubmed_id": "16858420", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE6710", "order": "none", "update_date": "Mar 12 2008", "subsets": [ { "dataset_id": "GDS2518", "description": "patient B", "sample_id": [ "GSM154768", "GSM154769" ], "type": "individual", "id": "GDS2518_1" }, { "dataset_id": "GDS2518", "description": "patient C", "sample_id": [ "GSM154770", "GSM154771" ], "type": "individual", "id": "GDS2518_2" }, { "dataset_id": "GDS2518", "description": "patient D", "sample_id": [ "GSM154772", "GSM154773" ], "type": "individual", "id": "GDS2518_3" }, { "dataset_id": "GDS2518", "description": "patient E", "sample_id": [ "GSM154774", "GSM154775" ], "type": "individual", "id": "GDS2518_4" }, { "dataset_id": "GDS2518", "description": "patient F", "sample_id": [ "GSM154776", "GSM154777" ], "type": "individual", "id": "GDS2518_5" }, { "dataset_id": "GDS2518", "description": "patient G", "sample_id": [ "GSM154778", "GSM154779" ], "type": "individual", "id": "GDS2518_6" }, { "dataset_id": "GDS2518", "description": "patient J", "sample_id": [ "GSM154780", "GSM154781" ], "type": "individual", "id": "GDS2518_7" }, { "dataset_id": "GDS2518", "description": "patient L", "sample_id": [ "GSM154782", "GSM154783" ], "type": "individual", "id": "GDS2518_8" }, { "dataset_id": "GDS2518", "description": "patient Z", "sample_id": [ "GSM154784", "GSM154785" ], "type": "individual", "id": "GDS2518_9" }, { "dataset_id": "GDS2518", "description": "patient N", "sample_id": [ "GSM154786", "GSM154787" ], "type": "individual", "id": "GDS2518_10" }, { "dataset_id": "GDS2518", "description": "patient P", "sample_id": [ "GSM154788", "GSM154789" ], "type": "individual", "id": "GDS2518_11" }, { "dataset_id": "GDS2518", "description": "patient R", "sample_id": [ "GSM154790", "GSM154791" ], "type": "individual", "id": "GDS2518_12" }, { "dataset_id": "GDS2518", "description": "patient W", "sample_id": [ "GSM154792", "GSM154793" ], "type": "individual", "id": "GDS2518_13" }, { "dataset_id": "GDS2518", "description": "uninvolved", "sample_id": [ "GSM154769", "GSM154771", "GSM154773", "GSM154775", "GSM154777", "GSM154779", "GSM154781", "GSM154783", "GSM154785", "GSM154787", "GSM154789", "GSM154791", "GSM154793" ], "type": "disease state", "id": "GDS2518_14" }, { "dataset_id": "GDS2518", "description": "lesional", "sample_id": [ "GSM154768", "GSM154770", "GSM154772", "GSM154774", "GSM154776", "GSM154778", "GSM154780", "GSM154782", "GSM154784", "GSM154786", "GSM154788", "GSM154790", "GSM154792" ], "type": "disease state", "id": "GDS2518_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2518", "version": 1.0, "instances": "26", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2518.tab", "compression": "gz" } ], [ [ "GDS2519.tab" ], { "title": "Early-stage Parkinson's disease: whole blood", "description": "Analysis of blood of 50 patients predominantly with early-stage Parkinson\u2019s disease (PD). Results provide insight into the molecular processes perturbed in the cellular blood of patients with early-stage PD.", "type": "Expression profiling by array", "pubmed_id": "17215369", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "105", "value_type": "count", "reference_series": "GSE6613", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2519", "description": "healthy control", "sample_id": [ "GSM153405", "GSM153406", "GSM153419", "GSM153423", "GSM153425", "GSM153427", "GSM153428", "GSM153429", "GSM153433", "GSM153444", "GSM153448", "GSM153451", "GSM153452", "GSM153477", "GSM153479", "GSM153484", "GSM153488", "GSM153496", "GSM153497", "GSM153500", "GSM153503", "GSM153508" ], "type": "disease state", "id": "GDS2519_1" }, { "dataset_id": "GDS2519", "description": "neurodegenerative disease control", "sample_id": [ "GSM153409", "GSM153426", "GSM153431", "GSM153438", "GSM153440", "GSM153447", "GSM153450", "GSM153456", "GSM153457", "GSM153458", "GSM153459", "GSM153460", "GSM153461", "GSM153463", "GSM153464", "GSM153466", "GSM153467", "GSM153468", "GSM153469", "GSM153470", "GSM153471", "GSM153472", "GSM153473", "GSM153474", "GSM153475", "GSM153476", "GSM153478", "GSM153480", "GSM153486", "GSM153487", "GSM153499", "GSM153504", "GSM153507" ], "type": "disease state", "id": "GDS2519_2" }, { "dataset_id": "GDS2519", "description": "Parkinson's disease", "sample_id": [ "GSM153404", "GSM153407", "GSM153408", "GSM153410", "GSM153411", "GSM153412", "GSM153413", "GSM153414", "GSM153415", "GSM153416", "GSM153417", "GSM153418", "GSM153420", "GSM153421", "GSM153422", "GSM153424", "GSM153430", "GSM153432", "GSM153434", "GSM153435", "GSM153436", "GSM153437", "GSM153439", "GSM153441", "GSM153442", "GSM153443", "GSM153445", "GSM153446", "GSM153449", "GSM153453", "GSM153454", "GSM153455", "GSM153462", "GSM153465", "GSM153481", "GSM153482", "GSM153483", "GSM153485", "GSM153489", "GSM153490", "GSM153491", "GSM153492", "GSM153493", "GSM153494", "GSM153495", "GSM153498", "GSM153501", "GSM153502", "GSM153505", "GSM153506" ], "type": "disease state", "id": "GDS2519_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2519", "version": 1.0, "instances": "105", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2519.tab", "compression": "gz" } ], [ [ "GDS252.tab" ], { "title": "Lung hypertension recovery (U74Av2)", "description": "Analysis of vascular remodeling following pulmonary hypertension. Lungs of hypoxic treated animals analyzed. Hypoxia induces vasoconstriction then hypertrophy/hyperplasia of pulmonary vascular smooth muscle and endothelial cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE482", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS252", "description": "0 h", "sample_id": [ "GSM49867" ], "type": "time", "id": "GDS252_1" }, { "dataset_id": "GDS252", "description": "10 h", "sample_id": [ "GSM49863", "GSM49864" ], "type": "time", "id": "GDS252_2" }, { "dataset_id": "GDS252", "description": "2 d", "sample_id": [ "GSM4171", "GSM4174" ], "type": "time", "id": "GDS252_3" }, { "dataset_id": "GDS252", "description": "4 d", "sample_id": [ "GSM49866", "GSM49868" ], "type": "time", "id": "GDS252_4" }, { "dataset_id": "GDS252", "description": "6 d", "sample_id": [ "GSM4177", "GSM4180" ], "type": "time", "id": "GDS252_5" }, { "dataset_id": "GDS252", "description": "normoxic", "sample_id": [ "GSM49867" ], "type": "protocol", "id": "GDS252_6" }, { "dataset_id": "GDS252", "description": "hypoxic", "sample_id": [ "GSM4171", "GSM4174", "GSM4177", "GSM4180", "GSM49863", "GSM49864", "GSM49866", "GSM49868" ], "type": "protocol", "id": "GDS252_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS252", "version": 1.0, "instances": "9", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS252.tab", "compression": "gz" } ], [ [ "GDS2520.tab" ], { "title": "Head and neck squamous cell carcinoma", "description": "Analysis of paired normal tissues and tumor samples from patients with head and neck squamous cell carcinoma (HNSCC). Results used to assess the effectiveness of using a combinatorial approach to analyze microarray data in identifying differentially expressed genes.", "type": "Expression profiling by array", "pubmed_id": "15170515", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE6631", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2520", "description": "patient 1", "sample_id": [ "GSM153814", "GSM153813" ], "type": "individual", "id": "GDS2520_1" }, { "dataset_id": "GDS2520", "description": "patient 2", "sample_id": [ "GSM153815", "GSM153816" ], "type": "individual", "id": "GDS2520_2" }, { "dataset_id": "GDS2520", "description": "patient 3", "sample_id": [ "GSM153817", "GSM153818" ], "type": "individual", "id": "GDS2520_3" }, { "dataset_id": "GDS2520", "description": "patient 4", "sample_id": [ "GSM153819", "GSM153820" ], "type": "individual", "id": "GDS2520_4" }, { "dataset_id": "GDS2520", "description": "patient 5", "sample_id": [ "GSM153821", "GSM153822" ], "type": "individual", "id": "GDS2520_5" }, { "dataset_id": "GDS2520", "description": "patient 6", "sample_id": [ "GSM153823", "GSM153824" ], "type": "individual", "id": "GDS2520_6" }, { "dataset_id": "GDS2520", "description": "patient 7", "sample_id": [ "GSM153825", "GSM153826" ], "type": "individual", "id": "GDS2520_7" }, { "dataset_id": "GDS2520", "description": "patient 8", "sample_id": [ "GSM153827", "GSM153828" ], "type": "individual", "id": "GDS2520_8" }, { "dataset_id": "GDS2520", "description": "patient 9", "sample_id": [ "GSM153829", "GSM153830" ], "type": "individual", "id": "GDS2520_9" }, { "dataset_id": "GDS2520", "description": "patient 10", "sample_id": [ "GSM153831", "GSM153832" ], "type": "individual", "id": "GDS2520_10" }, { "dataset_id": "GDS2520", "description": "patient 11", "sample_id": [ "GSM153833", "GSM153834" ], "type": "individual", "id": "GDS2520_11" }, { "dataset_id": "GDS2520", "description": "patient 12", "sample_id": [ "GSM153835", "GSM153836" ], "type": "individual", "id": "GDS2520_12" }, { "dataset_id": "GDS2520", "description": "patient 13", "sample_id": [ "GSM153837", "GSM153838" ], "type": "individual", "id": "GDS2520_13" }, { "dataset_id": "GDS2520", "description": "patient 14", "sample_id": [ "GSM153839", "GSM153840" ], "type": "individual", "id": "GDS2520_14" }, { "dataset_id": "GDS2520", "description": "patient 15", "sample_id": [ "GSM153841", "GSM153842" ], "type": "individual", "id": "GDS2520_15" }, { "dataset_id": "GDS2520", "description": "patient 16", "sample_id": [ "GSM153843", "GSM153844" ], "type": "individual", "id": "GDS2520_16" }, { "dataset_id": "GDS2520", "description": "patient 17", "sample_id": [ "GSM153845", "GSM153846" ], "type": "individual", "id": "GDS2520_17" }, { "dataset_id": "GDS2520", "description": "patient 18", "sample_id": [ "GSM153847", "GSM153848" ], "type": "individual", "id": "GDS2520_18" }, { "dataset_id": "GDS2520", "description": "patient 19", "sample_id": [ "GSM153849", "GSM153850" ], "type": "individual", "id": "GDS2520_19" }, { "dataset_id": "GDS2520", "description": "patient 20", "sample_id": [ "GSM153851", "GSM153852" ], "type": "individual", "id": "GDS2520_20" }, { "dataset_id": "GDS2520", "description": "patient 21", "sample_id": [ "GSM153853", "GSM153854" ], "type": "individual", "id": "GDS2520_21" }, { "dataset_id": "GDS2520", "description": "patient 22", "sample_id": [ "GSM153855", "GSM153856" ], "type": "individual", "id": "GDS2520_22" }, { "dataset_id": "GDS2520", "description": "normal", "sample_id": [ "GSM153815", "GSM153817", "GSM153819", "GSM153821", "GSM153823", "GSM153825", "GSM153827", "GSM153829", "GSM153831", "GSM153833", "GSM153835", "GSM153837", "GSM153839", "GSM153841", "GSM153843", "GSM153845", "GSM153847", "GSM153849", "GSM153851", "GSM153853", "GSM153855", "GSM153813" ], "type": "disease state", "id": "GDS2520_23" }, { "dataset_id": "GDS2520", "description": "head and neck squamous carcinoma", "sample_id": [ "GSM153814", "GSM153816", "GSM153818", "GSM153820", "GSM153822", "GSM153824", "GSM153826", "GSM153828", "GSM153830", "GSM153832", "GSM153834", "GSM153836", "GSM153838", "GSM153840", "GSM153842", "GSM153844", "GSM153846", "GSM153848", "GSM153850", "GSM153852", "GSM153854", "GSM153856" ], "type": "disease state", "id": "GDS2520_24" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2520", "version": 1.0, "instances": "44", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2520.tab", "compression": "gz" } ], [ [ "GDS2521.tab" ], { "title": "Megakaryocytes at successive stages of maturation", "description": "Analysis of primary megakaryocytes (MK) purified after 3 to 6 days in culture. MKs undergo sequential morphologic and functional transitions that culminate in platelet assembly in proplatelets. Results provide insight into molecular mechanisms underlying MK differentiation and platelet formation.", "type": "Expression profiling by array", "pubmed_id": "17047147", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE6593", "order": "ordered", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2521", "description": "progenitor", "sample_id": [ "GSM152271", "GSM152272" ], "type": "development stage", "id": "GDS2521_1" }, { "dataset_id": "GDS2521", "description": "3 days in culture", "sample_id": [ "GSM152273", "GSM152274" ], "type": "development stage", "id": "GDS2521_2" }, { "dataset_id": "GDS2521", "description": "4 days in culture", "sample_id": [ "GSM152275", "GSM152276" ], "type": "development stage", "id": "GDS2521_3" }, { "dataset_id": "GDS2521", "description": "6 days in culture", "sample_id": [ "GSM152277", "GSM152278", "GSM152279" ], "type": "development stage", "id": "GDS2521_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2521", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2521.tab", "compression": "gz" } ], [ [ "GDS2522.tab" ], { "title": "Pyocyanin treatment: dose response", "description": "Analysis of cells treated with 25 or 250 ug/ml of the blue metabolite pyocyanin for 6 hours. Pyocyanin, produced by Pseudomonas aeruginosa, kills cells by generating reactive oxygen species. Results provide insight into the molecular mechanisms underlying the stress response to pyocyanin.", "type": "Expression profiling by array", "pubmed_id": "17185230", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6185", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2522", "description": "control", "sample_id": [ "GSM142982", "GSM142984" ], "type": "dose", "id": "GDS2522_1" }, { "dataset_id": "GDS2522", "description": "25 ug/ml", "sample_id": [ "GSM142983", "GSM142985" ], "type": "dose", "id": "GDS2522_2" }, { "dataset_id": "GDS2522", "description": "250 ug/ml", "sample_id": [ "GSM142986", "GSM142987" ], "type": "dose", "id": "GDS2522_3" }, { "dataset_id": "GDS2522", "description": "untreated", "sample_id": [ "GSM142982", "GSM142984" ], "type": "agent", "id": "GDS2522_4" }, { "dataset_id": "GDS2522", "description": "pyocyanin", "sample_id": [ "GSM142983", "GSM142985", "GSM142986", "GSM142987" ], "type": "agent", "id": "GDS2522_5" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2522", "version": 1.0, "instances": "6", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2522.tab", "compression": "gz" } ], [ [ "GDS2523.tab" ], { "title": "Leaf Response to Aphid Feeding", "description": "Analysis of rosette leaves subjected to aphid infestation. To date, little is known about how plants perceive and defend themselves from phloem-feeding aphids. Results provide insight into the molecular basis of phloem-feeding insect-plant interactions and the development of control strategies.", "type": "Expression profiling by array", "pubmed_id": "17916270", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6823", "order": "none", "update_date": "Jul 31 2008", "subsets": [ { "dataset_id": "GDS2523", "description": "control", "sample_id": [ "GSM157299", "GSM157301", "GSM157303" ], "type": "stress", "id": "GDS2523_1" }, { "dataset_id": "GDS2523", "description": "aphid feeding", "sample_id": [ "GSM157300", "GSM157302", "GSM157304" ], "type": "stress", "id": "GDS2523_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2523", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2523.tab", "compression": "gz" } ], [ [ "GDS2524.tab" ], { "title": "Effect of gonadal steroids on sex differences in response to blood-stage malaria infection: time course", "description": "Analysis of white blood cells (WBCs) isolated from spleens of intact and gonadectomized (gdx) males and females up to 14 days after inoculation with Plasmodium chabaudi. Results provide insight into molecular mechanisms mediating the sexual dimorphism in resistance to blood-stage malaria infection.", "type": "Expression profiling by array", "pubmed_id": "16714546", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE4324", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2524", "description": "0 days", "sample_id": [ "GSM98652", "GSM98656", "GSM98660", "GSM98664", "GSM98668", "GSM98672", "GSM98676", "GSM98680", "GSM98684", "GSM98688", "GSM98692", "GSM98696" ], "type": "time", "id": "GDS2524_1" }, { "dataset_id": "GDS2524", "description": "3 days", "sample_id": [ "GSM98653", "GSM98657", "GSM98661", "GSM98665", "GSM98669", "GSM98673", "GSM98677", "GSM98681", "GSM98685", "GSM98689", "GSM98693", "GSM98697" ], "type": "time", "id": "GDS2524_2" }, { "dataset_id": "GDS2524", "description": "7 days", "sample_id": [ "GSM98654", "GSM98658", "GSM98662", "GSM98666", "GSM98670", "GSM98674", "GSM98678", "GSM98682", "GSM98686", "GSM98690", "GSM98694", "GSM98698" ], "type": "time", "id": "GDS2524_3" }, { "dataset_id": "GDS2524", "description": "14 days", "sample_id": [ "GSM98655", "GSM98659", "GSM98663", "GSM98667", "GSM98671", "GSM98675", "GSM98679", "GSM98683", "GSM98687", "GSM98691", "GSM98695", "GSM98699" ], "type": "time", "id": "GDS2524_4" }, { "dataset_id": "GDS2524", "description": "intact", "sample_id": [ "GSM98652", "GSM98653", "GSM98654", "GSM98655", "GSM98660", "GSM98661", "GSM98662", "GSM98663", "GSM98668", "GSM98669", "GSM98670", "GSM98671", "GSM98676", "GSM98677", "GSM98678", "GSM98679", "GSM98684", "GSM98685", "GSM98686", "GSM98687", "GSM98692", "GSM98693", "GSM98694", "GSM98695" ], "type": "protocol", "id": "GDS2524_5" }, { "dataset_id": "GDS2524", "description": "gonadectomized", "sample_id": [ "GSM98656", "GSM98657", "GSM98658", "GSM98659", "GSM98664", "GSM98665", "GSM98666", "GSM98667", "GSM98672", "GSM98673", "GSM98674", "GSM98675", "GSM98680", "GSM98681", "GSM98682", "GSM98683", "GSM98688", "GSM98689", "GSM98690", "GSM98691", "GSM98696", "GSM98697", "GSM98698", "GSM98699" ], "type": "protocol", "id": "GDS2524_6" }, { "dataset_id": "GDS2524", "description": "male", "sample_id": [ "GSM98660", "GSM98661", "GSM98662", "GSM98663", "GSM98664", "GSM98665", "GSM98666", "GSM98667", "GSM98676", "GSM98677", "GSM98678", "GSM98679", "GSM98680", "GSM98681", "GSM98682", "GSM98683", "GSM98692", "GSM98693", "GSM98694", "GSM98695", "GSM98696", "GSM98697", "GSM98698", "GSM98699" ], "type": "gender", "id": "GDS2524_7" }, { "dataset_id": "GDS2524", "description": "female", "sample_id": [ "GSM98652", "GSM98653", "GSM98654", "GSM98655", "GSM98656", "GSM98657", "GSM98658", "GSM98659", "GSM98668", "GSM98669", "GSM98670", "GSM98671", "GSM98672", "GSM98673", "GSM98674", "GSM98675", "GSM98684", "GSM98685", "GSM98686", "GSM98687", "GSM98688", "GSM98689", "GSM98690", "GSM98691" ], "type": "gender", "id": "GDS2524_8" }, { "dataset_id": "GDS2524", "description": "control", "sample_id": [ "GSM98656", "GSM98672", "GSM98688", "GSM98652", "GSM98668", "GSM98684", "GSM98664", "GSM98680", "GSM98696", "GSM98660", "GSM98676", "GSM98692" ], "type": "disease state", "id": "GDS2524_9" }, { "dataset_id": "GDS2524", "description": "infected", "sample_id": [ "GSM98659", "GSM98675", "GSM98691", "GSM98657", "GSM98673", "GSM98689", "GSM98658", "GSM98674", "GSM98690", "GSM98655", "GSM98671", "GSM98687", "GSM98653", "GSM98669", "GSM98685", "GSM98654", "GSM98670", "GSM98686", "GSM98667", "GSM98683", "GSM98699", "GSM98665", "GSM98681", "GSM98697", "GSM98666", "GSM98682", "GSM98698", "GSM98663", "GSM98679", "GSM98695", "GSM98661", "GSM98677", "GSM98693", "GSM98662", "GSM98678", "GSM98694" ], "type": "disease state", "id": "GDS2524_10" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2524", "version": 1.0, "instances": "48", "variables": 13881, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2524.tab", "compression": "gz" } ], [ [ "GDS2525.tab" ], { "title": "Foxp3 ablation effect on mature regulatory T cells", "description": "Analysis of mature regulatory T cells (Treg) ablated for the transcription factor Foxp3. Foxp3 is required for the development of Treg cells. Results provide insight into the role of Foxp3 in maintaining the transcriptional and functional program established during Treg cell development.", "type": "Expression profiling by array", "pubmed_id": "17220892", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6681", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2525", "description": "control", "sample_id": [ "GSM154369", "GSM154373" ], "type": "protocol", "id": "GDS2525_1" }, { "dataset_id": "GDS2525", "description": "Foxp3 ablation", "sample_id": [ "GSM154366", "GSM154371" ], "type": "protocol", "id": "GDS2525_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2525", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2525.tab", "compression": "gz" } ], [ [ "GDS2526.tab" ], { "title": "c-MYC depletion effect on carcinoma cell lines", "description": "Analysis of breast and cervix carcinoma cell lines depleted for c-MYC by siRNA knockdown. Abnormal activation of c-MYC contributes to breast and cervix carcinogenesis. Results provide insight into the molecular basis of the developmental and oncogenic roles of MYC proteins.", "type": "Expression profiling by array", "pubmed_id": "17159920", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE5823", "order": "none", "update_date": "Mar 13 2008", "subsets": [ { "dataset_id": "GDS2526", "description": "control", "sample_id": [ "GSM136079", "GSM136081", "GSM136083", "GSM136085", "GSM136087", "GSM136089", "GSM136091", "GSM136095", "GSM136097" ], "type": "protocol", "id": "GDS2526_1" }, { "dataset_id": "GDS2526", "description": "c-MYC knockdown", "sample_id": [ "GSM136080", "GSM136082", "GSM136084", "GSM136086", "GSM136088", "GSM136090", "GSM136092", "GSM136096", "GSM136098" ], "type": "protocol", "id": "GDS2526_2" }, { "dataset_id": "GDS2526", "description": "cervical cancer", "sample_id": [ "GSM136095", "GSM136096", "GSM136097", "GSM136098" ], "type": "other", "id": "GDS2526_3" }, { "dataset_id": "GDS2526", "description": "breast cancer", "sample_id": [ "GSM136079", "GSM136080", "GSM136081", "GSM136082", "GSM136083", "GSM136084", "GSM136085", "GSM136086", "GSM136087", "GSM136088", "GSM136089", "GSM136090", "GSM136091", "GSM136092" ], "type": "other", "id": "GDS2526_4" }, { "dataset_id": "GDS2526", "description": "BT-474", "sample_id": [ "GSM136079", "GSM136080", "GSM136081", "GSM136082" ], "type": "cell line", "id": "GDS2526_5" }, { "dataset_id": "GDS2526", "description": "MCF-7", "sample_id": [ "GSM136083", "GSM136084", "GSM136085", "GSM136086", "GSM136087", "GSM136088" ], "type": "cell line", "id": "GDS2526_6" }, { "dataset_id": "GDS2526", "description": "MDA-MB-231", "sample_id": [ "GSM136089", "GSM136090", "GSM136091", "GSM136092" ], "type": "cell line", "id": "GDS2526_7" }, { "dataset_id": "GDS2526", "description": "HeLa", "sample_id": [ "GSM136095", "GSM136096", "GSM136097", "GSM136098" ], "type": "cell line", "id": "GDS2526_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2526", "version": 1.0, "instances": "18", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2526.tab", "compression": "gz" } ], [ [ "GDS2528.tab" ], { "title": "Basal plate of the placenta from midgestation to term (HG-U133A)", "description": "Analysis of the basal plate of the placenta from midgestation to term. The basal plate is the region where maternal and fetal cells coexist. Its proper formation is required for pregnancy. Results provide insight into the molecular basis of the unique cell-cell interactions in the basal plate.", "type": "Expression profiling by array", "pubmed_id": "17170095", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE5999", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS2528", "description": "14 wk", "sample_id": [ "GSM154642", "GSM154643" ], "type": "age", "id": "GDS2528_1" }, { "dataset_id": "GDS2528", "description": "16 wk", "sample_id": [ "GSM154644", "GSM154645", "GSM154646", "GSM154647" ], "type": "age", "id": "GDS2528_2" }, { "dataset_id": "GDS2528", "description": "18 wk", "sample_id": [ "GSM154648", "GSM154649", "GSM154650", "GSM154651", "GSM154652", "GSM154653" ], "type": "age", "id": "GDS2528_3" }, { "dataset_id": "GDS2528", "description": "19 wk", "sample_id": [ "GSM154654", "GSM154655", "GSM154656" ], "type": "age", "id": "GDS2528_4" }, { "dataset_id": "GDS2528", "description": "21 wk", "sample_id": [ "GSM154657", "GSM154658", "GSM154659", "GSM154660", "GSM154661", "GSM154662" ], "type": "age", "id": "GDS2528_5" }, { "dataset_id": "GDS2528", "description": "22 wk", "sample_id": [ "GSM154663" ], "type": "age", "id": "GDS2528_6" }, { "dataset_id": "GDS2528", "description": "23 wk", "sample_id": [ "GSM154664", "GSM154665", "GSM154666" ], "type": "age", "id": "GDS2528_7" }, { "dataset_id": "GDS2528", "description": "24 wk", "sample_id": [ "GSM154667", "GSM154668" ], "type": "age", "id": "GDS2528_8" }, { "dataset_id": "GDS2528", "description": "37 wk", "sample_id": [ "GSM154669", "GSM154670" ], "type": "age", "id": "GDS2528_9" }, { "dataset_id": "GDS2528", "description": "38 wk", "sample_id": [ "GSM154671" ], "type": "age", "id": "GDS2528_10" }, { "dataset_id": "GDS2528", "description": "39 wk", "sample_id": [ "GSM154672", "GSM154673", "GSM154674", "GSM154675", "GSM154676" ], "type": "age", "id": "GDS2528_11" }, { "dataset_id": "GDS2528", "description": "40 wk", "sample_id": [ "GSM154677" ], "type": "age", "id": "GDS2528_12" }, { "dataset_id": "GDS2528", "description": "midgestation", "sample_id": [ "GSM154642", "GSM154643", "GSM154644", "GSM154645", "GSM154646", "GSM154647", "GSM154648", "GSM154649", "GSM154650", "GSM154651", "GSM154652", "GSM154653", "GSM154654", "GSM154655", "GSM154656", "GSM154657", "GSM154658", "GSM154659", "GSM154660", "GSM154661", "GSM154662", "GSM154663", "GSM154664", "GSM154665", "GSM154666", "GSM154667", "GSM154668" ], "type": "development stage", "id": "GDS2528_13" }, { "dataset_id": "GDS2528", "description": "term", "sample_id": [ "GSM154669", "GSM154670", "GSM154671", "GSM154672", "GSM154673", "GSM154674", "GSM154675", "GSM154676", "GSM154677" ], "type": "development stage", "id": "GDS2528_14" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2528", "version": 1.0, "instances": "36", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2528.tab", "compression": "gz" } ], [ [ "GDS2529.tab" ], { "title": "Basal plate of the placenta from midgestation to term (HG-U133B)", "description": "Analysis of the basal plate of the placenta from midgestation to term. The basal plate is the region where maternal and fetal cells coexist. Its proper formation is required for pregnancy. Results provide insight into the molecular basis of the unique cell-cell interactions in the basal plate.", "type": "Expression profiling by array", "pubmed_id": "17170095", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE5999", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS2529", "description": "14 wk", "sample_id": [ "GSM154678", "GSM154679" ], "type": "age", "id": "GDS2529_1" }, { "dataset_id": "GDS2529", "description": "16 wk", "sample_id": [ "GSM154680", "GSM154681", "GSM154682", "GSM154683" ], "type": "age", "id": "GDS2529_2" }, { "dataset_id": "GDS2529", "description": "18 wk", "sample_id": [ "GSM154684", "GSM154685", "GSM154686", "GSM154687", "GSM154688", "GSM154689" ], "type": "age", "id": "GDS2529_3" }, { "dataset_id": "GDS2529", "description": "19 wk", "sample_id": [ "GSM154690", "GSM154691", "GSM154692" ], "type": "age", "id": "GDS2529_4" }, { "dataset_id": "GDS2529", "description": "21 wk", "sample_id": [ "GSM154693", "GSM154694", "GSM154695", "GSM154696", "GSM154697", "GSM154698" ], "type": "age", "id": "GDS2529_5" }, { "dataset_id": "GDS2529", "description": "22 wk", "sample_id": [ "GSM154699" ], "type": "age", "id": "GDS2529_6" }, { "dataset_id": "GDS2529", "description": "23 wk", "sample_id": [ "GSM154700", "GSM154701", "GSM154702" ], "type": "age", "id": "GDS2529_7" }, { "dataset_id": "GDS2529", "description": "24 wk", "sample_id": [ "GSM154703", "GSM154704" ], "type": "age", "id": "GDS2529_8" }, { "dataset_id": "GDS2529", "description": "37 wk", "sample_id": [ "GSM154705", "GSM154706" ], "type": "age", "id": "GDS2529_9" }, { "dataset_id": "GDS2529", "description": "38 wk", "sample_id": [ "GSM154707" ], "type": "age", "id": "GDS2529_10" }, { "dataset_id": "GDS2529", "description": "39 wk", "sample_id": [ "GSM154708", "GSM154709", "GSM154710", "GSM154711", "GSM154712" ], "type": "age", "id": "GDS2529_11" }, { "dataset_id": "GDS2529", "description": "40 wk", "sample_id": [ "GSM154713" ], "type": "age", "id": "GDS2529_12" }, { "dataset_id": "GDS2529", "description": "midgestation", "sample_id": [ "GSM154678", "GSM154679", "GSM154680", "GSM154681", "GSM154682", "GSM154683", "GSM154684", "GSM154685", "GSM154686", "GSM154687", "GSM154688", "GSM154689", "GSM154690", "GSM154691", "GSM154692", "GSM154693", "GSM154694", "GSM154695", "GSM154696", "GSM154697", "GSM154698", "GSM154699", "GSM154700", "GSM154701", "GSM154702", "GSM154703", "GSM154704" ], "type": "development stage", "id": "GDS2529_13" }, { "dataset_id": "GDS2529", "description": "term", "sample_id": [ "GSM154705", "GSM154706", "GSM154707", "GSM154708", "GSM154709", "GSM154710", "GSM154711", "GSM154712", "GSM154713" ], "type": "development stage", "id": "GDS2529_14" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2529", "version": 1.0, "instances": "36", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2529.tab", "compression": "gz" } ], [ [ "GDS253.tab" ], { "title": "Methylprednisolone effect on liver: time course", "description": "Expression profiling of liver from animals treated with methylprednisolone. Liver examined at various time points up to 72 hours following methylprednisolone treatment. Results provide insight into prednisone pharmacodynamics.", "type": "Expression profiling by array", "pubmed_id": [ "12808002", "19787073" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE487", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS253", "description": "0 h", "sample_id": [ "GSM4226", "GSM4227", "GSM4228", "GSM4229" ], "type": "time", "id": "GDS253_1" }, { "dataset_id": "GDS253", "description": "0.25 h", "sample_id": [ "GSM4183", "GSM4184", "GSM4185" ], "type": "time", "id": "GDS253_2" }, { "dataset_id": "GDS253", "description": "0.5 h", "sample_id": [ "GSM4186", "GSM4187", "GSM4188" ], "type": "time", "id": "GDS253_3" }, { "dataset_id": "GDS253", "description": "0.75 h", "sample_id": [ "GSM4189", "GSM4190", "GSM4191" ], "type": "time", "id": "GDS253_4" }, { "dataset_id": "GDS253", "description": "1 h", "sample_id": [ "GSM4197", "GSM4198", "GSM4199" ], "type": "time", "id": "GDS253_5" }, { "dataset_id": "GDS253", "description": "2 h", "sample_id": [ "GSM4200", "GSM4201" ], "type": "time", "id": "GDS253_6" }, { "dataset_id": "GDS253", "description": "4 h", "sample_id": [ "GSM4207", "GSM4208", "GSM4209" ], "type": "time", "id": "GDS253_7" }, { "dataset_id": "GDS253", "description": "5 h", "sample_id": [ "GSM4213", "GSM4214" ], "type": "time", "id": "GDS253_8" }, { "dataset_id": "GDS253", "description": "5.5 h", "sample_id": [ "GSM4210", "GSM4211", "GSM4212" ], "type": "time", "id": "GDS253_9" }, { "dataset_id": "GDS253", "description": "6 h", "sample_id": [ "GSM4215", "GSM4216" ], "type": "time", "id": "GDS253_10" }, { "dataset_id": "GDS253", "description": "7 h", "sample_id": [ "GSM4220", "GSM4221", "GSM4222" ], "type": "time", "id": "GDS253_11" }, { "dataset_id": "GDS253", "description": "8 h", "sample_id": [ "GSM4223", "GSM4224", "GSM4225" ], "type": "time", "id": "GDS253_12" }, { "dataset_id": "GDS253", "description": "12 h", "sample_id": [ "GSM4192", "GSM4193" ], "type": "time", "id": "GDS253_13" }, { "dataset_id": "GDS253", "description": "18 h", "sample_id": [ "GSM4194", "GSM4195", "GSM4196" ], "type": "time", "id": "GDS253_14" }, { "dataset_id": "GDS253", "description": "30 h", "sample_id": [ "GSM4202", "GSM4203" ], "type": "time", "id": "GDS253_15" }, { "dataset_id": "GDS253", "description": "48 h", "sample_id": [ "GSM4204", "GSM4205", "GSM4206" ], "type": "time", "id": "GDS253_16" }, { "dataset_id": "GDS253", "description": "72 h", "sample_id": [ "GSM4218", "GSM4219" ], "type": "time", "id": "GDS253_17" }, { "dataset_id": "GDS253", "description": "control", "sample_id": [ "GSM4226", "GSM4227", "GSM4228", "GSM4229" ], "type": "agent", "id": "GDS253_18" }, { "dataset_id": "GDS253", "description": "methylprednisolone", "sample_id": [ "GSM4183", "GSM4184", "GSM4185", "GSM4186", "GSM4187", "GSM4188", "GSM4189", "GSM4190", "GSM4191", "GSM4197", "GSM4198", "GSM4199", "GSM4200", "GSM4201", "GSM4207", "GSM4208", "GSM4209", "GSM4213", "GSM4214", "GSM4210", "GSM4211", "GSM4212", "GSM4215", "GSM4216", "GSM4220", "GSM4221", "GSM4222", "GSM4223", "GSM4224", "GSM4225", "GSM4192", "GSM4193", "GSM4194", "GSM4195", "GSM4196", "GSM4202", "GSM4203", "GSM4204", "GSM4205", "GSM4206", "GSM4218", "GSM4219" ], "type": "agent", "id": "GDS253_19" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS253", "version": 1.0, "instances": "46", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS253.tab", "compression": "gz" } ], [ [ "GDS2530.tab" ], { "title": "Retinoblastomas with loss of heterozygosity at chromosome 16q", "description": "Analysis of 4 retinoblastomas with loss of heterozygosity (LOH) at chromosome 16q. In addition to RB1 gene mutations, retinoblastomas frequently show gains of 1q and 6p and losses of 16q. Results identify candidate tumor suppressors on 16q in retinoblastoma.", "type": "Expression profiling by array", "pubmed_id": "17210724", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5222", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2530", "description": "16q LOH", "sample_id": [ "GSM118316", "GSM118317", "GSM118318", "GSM118319" ], "type": "genotype/variation", "id": "GDS2530_1" }, { "dataset_id": "GDS2530", "description": "control", "sample_id": [ "GSM118320", "GSM118321", "GSM118322", "GSM118323", "GSM118324", "GSM118325", "GSM118326", "GSM118327" ], "type": "genotype/variation", "id": "GDS2530_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2530", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2530.tab", "compression": "gz" } ], [ [ "GDS2531.tab" ], { "title": "Antipsychotic agents clozapine and haloperidol effects on the brain (II)", "description": "Analysis of brains of animals treated for 12 weeks with the atypical antipsychotic clozapine or the typical antipsychotic haloperidol. Clozapine's use as an antipsychotic is limited by agranulocytosis. Results provide insight into the molecular basis of clozapine's therapeutic and toxic effects.", "type": "Expression profiling by array", "pubmed_id": "22767372", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE6467", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2531", "description": "clozapine", "sample_id": [ "GSM148657", "GSM148658", "GSM148659", "GSM148660", "GSM148661", "GSM148662", "GSM148663", "GSM148664", "GSM148665", "GSM148666" ], "type": "agent", "id": "GDS2531_1" }, { "dataset_id": "GDS2531", "description": "haloperidol", "sample_id": [ "GSM148667", "GSM148668", "GSM148669", "GSM148670", "GSM148671", "GSM148672", "GSM148673", "GSM148674", "GSM148675", "GSM148676" ], "type": "agent", "id": "GDS2531_2" }, { "dataset_id": "GDS2531", "description": "untreated", "sample_id": [ "GSM148677", "GSM148678", "GSM148679", "GSM148680", "GSM148681", "GSM148682", "GSM148683", "GSM148684", "GSM148685", "GSM148686" ], "type": "agent", "id": "GDS2531_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2531", "version": 1.0, "instances": "30", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2531.tab", "compression": "gz" } ], [ [ "GDS2532.tab" ], { "title": "Model of decidualization and menstruation", "description": "Analysis of uterine tissues of decidualized animals for up to 84 hours after the withdrawal of progesterone to induce a process similar to menstruation. Results provide insight into the molecular mechanisms underlying the remodeling and breakdown of the endometrium during the menstrual cycle.", "type": "Expression profiling by array", "pubmed_id": "17251523", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6359", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2532", "description": "36 h", "sample_id": [ "GSM146831" ], "type": "time", "id": "GDS2532_1" }, { "dataset_id": "GDS2532", "description": "48 h", "sample_id": [ "GSM146924" ], "type": "time", "id": "GDS2532_2" }, { "dataset_id": "GDS2532", "description": "60 h", "sample_id": [ "GSM146925" ], "type": "time", "id": "GDS2532_3" }, { "dataset_id": "GDS2532", "description": "84 h", "sample_id": [ "GSM146926" ], "type": "time", "id": "GDS2532_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2532", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2532.tab", "compression": "gz" } ], [ [ "GDS2533.tab" ], { "title": "Rap1 DNA-binding mutant", "description": "Analysis of temperature sensitive Rap1 mutant cells subjected to a temperature of 37 degrees C to dissociate the mutant protein from its DNA binding sites. Results provide insight into the contribution of this general regulatory factor to transcription genome-wide.", "type": "Expression profiling by array", "pubmed_id": "17158163", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6073", "order": "none", "update_date": "Mar 19 2008", "subsets": [ { "dataset_id": "GDS2533", "description": "wild-type", "sample_id": [ "GSM140805", "GSM140808", "GSM140809" ], "type": "genotype/variation", "id": "GDS2533_1" }, { "dataset_id": "GDS2533", "description": "Rap1 mutant", "sample_id": [ "GSM140810", "GSM140811", "GSM140812" ], "type": "genotype/variation", "id": "GDS2533_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2533", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2533.tab", "compression": "gz" } ], [ [ "GDS2534.tab" ], { "title": "p63 depletion effect", "description": "Analysis of ME180 cervical carcinoma cells depleted for p63 isoforms by expression of a small hairpin RNA targeting the p63 oligomerization domain. p63 is a p53 homolog essential for stratified epithelial development. Results provide insight into the function of p63 in transcriptional regulation.", "type": "Expression profiling by array", "pubmed_id": "17188034", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5993", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS2534", "description": "control", "sample_id": [ "GSM139217", "GSM139218", "GSM139219" ], "type": "protocol", "id": "GDS2534_1" }, { "dataset_id": "GDS2534", "description": "p63 depletion", "sample_id": [ "GSM139220", "GSM139221", "GSM139222" ], "type": "protocol", "id": "GDS2534_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2534", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2534.tab", "compression": "gz" } ], [ [ "GDS2535.tab" ], { "title": "Vanadium pentoxide effect on lung fibroblasts: time course", "description": "Analysis of lung fibroblasts for up to 24 hours following exposure to vanadium pentoxide (V2O5). Exposure to V2O5 is a cause of occupational bronchitis. Results provide insight into the molecular mechanisms that contribute to airway remodeling associated with V2O5-induced bronchitis.", "type": "Expression profiling by array", "pubmed_id": "17459161", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE5339", "order": "none", "update_date": "Jan 29 2007", "subsets": [ { "dataset_id": "GDS2535", "description": "control", "sample_id": [ "GSM120300", "GSM120301", "GSM120302", "GSM120303", "GSM120304", "GSM120305", "GSM120306", "GSM120307", "GSM120308", "GSM120309", "GSM120310", "GSM120311", "GSM120312", "GSM120313", "GSM120314" ], "type": "agent", "id": "GDS2535_1" }, { "dataset_id": "GDS2535", "description": "H202", "sample_id": [ "GSM120315", "GSM120316", "GSM120317", "GSM120318", "GSM120319", "GSM120320", "GSM120321", "GSM120322", "GSM120323", "GSM120324", "GSM120325", "GSM120326", "GSM120327", "GSM120328", "GSM120329" ], "type": "agent", "id": "GDS2535_2" }, { "dataset_id": "GDS2535", "description": "V205", "sample_id": [ "GSM120330", "GSM120331", "GSM120332", "GSM120333", "GSM120334", "GSM120335", "GSM120336", "GSM120337", "GSM120338", "GSM120339", "GSM120340", "GSM120341", "GSM120342", "GSM120343", "GSM120344" ], "type": "agent", "id": "GDS2535_3" }, { "dataset_id": "GDS2535", "description": "1 h", "sample_id": [ "GSM120303", "GSM120304", "GSM120305", "GSM120318", "GSM120319", "GSM120320", "GSM120333", "GSM120334", "GSM120335" ], "type": "time", "id": "GDS2535_4" }, { "dataset_id": "GDS2535", "description": "4 h", "sample_id": [ "GSM120309", "GSM120310", "GSM120311", "GSM120324", "GSM120325", "GSM120326", "GSM120339", "GSM120340", "GSM120341" ], "type": "time", "id": "GDS2535_5" }, { "dataset_id": "GDS2535", "description": "8 h", "sample_id": [ "GSM120312", "GSM120313", "GSM120314", "GSM120327", "GSM120328", "GSM120329", "GSM120342", "GSM120343", "GSM120344" ], "type": "time", "id": "GDS2535_6" }, { "dataset_id": "GDS2535", "description": "12 h", "sample_id": [ "GSM120300", "GSM120301", "GSM120302", "GSM120315", "GSM120316", "GSM120317", "GSM120330", "GSM120331", "GSM120332" ], "type": "time", "id": "GDS2535_7" }, { "dataset_id": "GDS2535", "description": "24 h", "sample_id": [ "GSM120306", "GSM120307", "GSM120308", "GSM120321", "GSM120322", "GSM120323", "GSM120336", "GSM120337", "GSM120338" ], "type": "time", "id": "GDS2535_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2535", "version": 1.0, "instances": "45", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2535.tab", "compression": "gz" } ], [ [ "GDS2536.tab" ], { "title": "Nickel effect on endothelial cells", "description": "Analysis of human umbilical vein endothelial cells treated with nickel chloride. Nickel compounds, important carcinogens and inducers of contact allergy reactions, are activators of endothelial cells. Results provide insight into the signaling pathways mediating the cellular responses to nickel.", "type": "Expression profiling by array", "pubmed_id": "17312168", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4852", "order": "none", "update_date": "Apr 25 2008", "subsets": [ { "dataset_id": "GDS2536", "description": "untreated", "sample_id": [ "GSM109131", "GSM109133", "GSM109135", "GSM109137" ], "type": "agent", "id": "GDS2536_1" }, { "dataset_id": "GDS2536", "description": "nickel chloride", "sample_id": [ "GSM109132", "GSM109134", "GSM109136", "GSM109138" ], "type": "agent", "id": "GDS2536_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2536", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2536.tab", "compression": "gz" } ], [ [ "GDS2537.tab" ], { "title": "Antipsychotic agents clozapine and haloperidol effects on the brain (I)", "description": "Analysis of brains of animals treated for 4 weeks with the atypical antipsychotic clozapine or the typical antipsychotic haloperidol. Clozapine's use as an antipsychotic is limited by agranulocytosis. Results provide insight into the molecular basis of clozapine's therapeutic and toxic effects.", "type": "Expression profiling by array", "pubmed_id": "22767372", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE6511", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2537", "description": "clozapine", "sample_id": [ "GSM149805", "GSM149806", "GSM149807" ], "type": "agent", "id": "GDS2537_1" }, { "dataset_id": "GDS2537", "description": "haloperidol", "sample_id": [ "GSM149808", "GSM149809", "GSM149810" ], "type": "agent", "id": "GDS2537_2" }, { "dataset_id": "GDS2537", "description": "control", "sample_id": [ "GSM149811", "GSM149812", "GSM149813" ], "type": "agent", "id": "GDS2537_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2537", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2537.tab", "compression": "gz" } ], [ [ "GDS254.tab" ], { "title": "Muscle, normal extraocular, profile", "description": "Molecular definition of extraocular muscles (EOM). EOM are anatomically and physiologically distinct from other skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "12006673", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE471", "order": "none", "update_date": "Jun 26 2003", "subsets": [ { "dataset_id": "GDS254", "description": "extraocular skeletal muscle", "sample_id": [ "GSM4242", "GSM4243", "GSM4244", "GSM4245" ], "type": "tissue", "id": "GDS254_1" }, { "dataset_id": "GDS254", "description": "tibialis anterior skeletal muscle", "sample_id": [ "GSM5553", "GSM5554", "GSM5555", "GSM5557", "GSM5559", "GSM5560", "GSM5561", "GSM5562", "GSM5563", "GSM5564", "GSM5565", "GSM5566" ], "type": "tissue", "id": "GDS254_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS254", "version": 1.0, "instances": "16", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS254.tab", "compression": "gz" } ], [ [ "GDS2540.tab" ], { "title": "Activity-dependent neuroprotective protein null mutation effect on embryos", "description": "Analysis of E9 mutant embryos lacking the gene for the activity-dependent neuroprotective protein (ADNP). ADNP deficiency results in neural tube closure defects and death at E8.5 to E9.5. Results provide insight into the role of ADNP in embryogenesis at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "17222401", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE4068", "order": "none", "update_date": "Jun 19 2008", "subsets": [ { "dataset_id": "GDS2540", "description": "wild type", "sample_id": [ "GSM92912", "GSM92922" ], "type": "genotype/variation", "id": "GDS2540_1" }, { "dataset_id": "GDS2540", "description": "heterozygous mutant", "sample_id": [ "GSM92929", "GSM92935", "GSM92939" ], "type": "genotype/variation", "id": "GDS2540_2" }, { "dataset_id": "GDS2540", "description": "homozygous mutant", "sample_id": [ "GSM92941", "GSM92945" ], "type": "genotype/variation", "id": "GDS2540_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2540", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2540.tab", "compression": "gz" } ], [ [ "GDS2542.tab" ], { "title": "Heart failure in obesity model", "description": "Analysis of left heart ventricles of 4 and 10-month old SHHF obese animals homozygous for leptin receptor (ObR) mutation. This mutant is obese at 4 months of age and prone to heart failure after 14 months. Results provide insight into molecular basis of the contribution of obesity to heart failure.", "type": "Expression profiling by array", "pubmed_id": "17222424", "platform": "GPL2580", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "57600", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2876", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2542", "description": "lean", "sample_id": [ "GSM62956", "GSM62957", "GSM62958", "GSM62959", "GSM62960", "GSM63001", "GSM63003", "GSM63004", "GSM63005", "GSM63006" ], "type": "disease state", "id": "GDS2542_1" }, { "dataset_id": "GDS2542", "description": "obese", "sample_id": [ "GSM62951", "GSM62952", "GSM62953", "GSM62954", "GSM62955", "GSM63008", "GSM63009", "GSM63011", "GSM63012", "GSM63014" ], "type": "disease state", "id": "GDS2542_2" }, { "dataset_id": "GDS2542", "description": "4 m", "sample_id": [ "GSM62951", "GSM62952", "GSM62953", "GSM62954", "GSM62955", "GSM62956", "GSM62957", "GSM62958", "GSM62959", "GSM62960" ], "type": "age", "id": "GDS2542_3" }, { "dataset_id": "GDS2542", "description": "10 m", "sample_id": [ "GSM63001", "GSM63003", "GSM63004", "GSM63005", "GSM63006", "GSM63008", "GSM63009", "GSM63011", "GSM63012", "GSM63014" ], "type": "age", "id": "GDS2542_4" } ], "taxid": "10116", "genes": 30526, "aggregation_function": "mean", "name": "GDS2542", "version": 1.0, "instances": "20", "variables": 30529, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2542.tab", "compression": "gz" } ], [ [ "GDS2545.tab" ], { "title": "Metastatic prostate cancer (HG-U95A)", "description": "Analysis of metastatic prostate tumors and primary prostate tumors. Normal tissue adjacent to the tumor and normal donor tissue also examined. Metastasis reflects the most adverse clinical outcome. Results provide insight into the molecular mechanisms underlying the metastatic process.", "type": "Expression profiling by array", "pubmed_id": [ "17430594", "15254046" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "171", "value_type": "count", "reference_series": "GSE6919", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS2545", "description": "normal prostate tissue", "sample_id": [ "GSM152804", "GSM152805", "GSM152806", "GSM152807", "GSM152808", "GSM152809", "GSM152810", "GSM152811", "GSM152812", "GSM152813", "GSM152814", "GSM152815", "GSM152816", "GSM152817", "GSM152818", "GSM152819", "GSM152820", "GSM152821" ], "type": "tissue", "id": "GDS2545_1" }, { "dataset_id": "GDS2545", "description": "normal prostate adjacent to tumor", "sample_id": [ "GSM153115", "GSM153116", "GSM153117", "GSM153118", "GSM153119", "GSM153120", "GSM153121", "GSM153122", "GSM153123", "GSM153124", "GSM153125", "GSM153126", "GSM153127", "GSM153128", "GSM153129", "GSM153130", "GSM153131", "GSM153132", "GSM153133", "GSM153134", "GSM153135", "GSM153136", "GSM153137", "GSM153138", "GSM153139", "GSM153140", "GSM153141", "GSM153142", "GSM153143", "GSM153144", "GSM153145", "GSM153146", "GSM153147", "GSM153148", "GSM153149", "GSM153150", "GSM153151", "GSM153152", "GSM153153", "GSM153154", "GSM153155", "GSM153156", "GSM153157", "GSM153158", "GSM153159", "GSM153160", "GSM153161", "GSM153162", "GSM153163", "GSM153164", "GSM153165", "GSM153166", "GSM153167", "GSM153168", "GSM153169", "GSM153170", "GSM153171", "GSM153172", "GSM153173", "GSM153174", "GSM153175", "GSM153176", "GSM153177" ], "type": "tissue", "id": "GDS2545_2" }, { "dataset_id": "GDS2545", "description": "primary prostate tumor", "sample_id": [ "GSM152931", "GSM152932", "GSM152933", "GSM152934", "GSM152935", "GSM152936", "GSM152937", "GSM152938", "GSM152939", "GSM152940", "GSM152941", "GSM152942", "GSM152943", "GSM152944", "GSM152945", "GSM152946", "GSM152947", "GSM152948", "GSM152949", "GSM152950", "GSM152951", "GSM152952", "GSM152953", "GSM152954", "GSM152955", "GSM152956", "GSM152957", "GSM152958", "GSM152959", "GSM152960", "GSM152961", "GSM152962", "GSM152963", "GSM152964", "GSM152965", "GSM152966", "GSM152967", "GSM152968", "GSM152969", "GSM152970", "GSM152971", "GSM152972", "GSM152973", "GSM152974", "GSM152975", "GSM152976", "GSM152977", "GSM152978", "GSM152979", "GSM152980", "GSM152981", "GSM152982", "GSM152983", "GSM152984", "GSM152985", "GSM152986", "GSM152987", "GSM152988", "GSM152989", "GSM152990", "GSM152991", "GSM187524", "GSM187525", "GSM187526", "GSM187527" ], "type": "tissue", "id": "GDS2545_3" }, { "dataset_id": "GDS2545", "description": "metastatic prostate tumor", "sample_id": [ "GSM152856", "GSM152857", "GSM152858", "GSM152859", "GSM152860", "GSM152861", "GSM152862", "GSM152863", "GSM152864", "GSM152865", "GSM152866", "GSM152867", "GSM152868", "GSM152869", "GSM152870", "GSM152871", "GSM152872", "GSM152873", "GSM152874", "GSM152875", "GSM152876", "GSM152877", "GSM152878", "GSM152879", "GSM152880" ], "type": "tissue", "id": "GDS2545_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2545", "version": 1.0, "instances": "171", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2545.tab", "compression": "gz" } ], [ [ "GDS2546.tab" ], { "title": "Metastatic prostate cancer (HG-U95B)", "description": "Analysis of metastatic prostate tumors and primary prostate tumors. Normal tissue adjacent to the tumor and normal donor tissue also examined. Metastasis reflects the most adverse clinical outcome. Results provide insight into the molecular mechanisms underlying the metastatic process.", "type": "Expression profiling by array", "pubmed_id": [ "17430594", "15254046" ], "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "167", "value_type": "count", "reference_series": "GSE6919", "order": "none", "update_date": "May 13 2008", "subsets": [ { "dataset_id": "GDS2546", "description": "normal prostate tissue", "sample_id": [ "GSM152822", "GSM152823", "GSM152824", "GSM152825", "GSM152826", "GSM152827", "GSM152828", "GSM152829", "GSM152830", "GSM152831", "GSM152832", "GSM152833", "GSM152834", "GSM152835", "GSM152836", "GSM152837", "GSM152838" ], "type": "tissue", "id": "GDS2546_1" }, { "dataset_id": "GDS2546", "description": "normal prostate adjacent to tumor", "sample_id": [ "GSM153178", "GSM153179", "GSM153180", "GSM153181", "GSM153183", "GSM153184", "GSM153185", "GSM153186", "GSM153187", "GSM153188", "GSM153189", "GSM153190", "GSM153191", "GSM153192", "GSM153193", "GSM153194", "GSM153195", "GSM153196", "GSM153197", "GSM153198", "GSM153199", "GSM153200", "GSM153201", "GSM153202", "GSM153203", "GSM153204", "GSM153205", "GSM153206", "GSM153207", "GSM153208", "GSM153209", "GSM153210", "GSM153211", "GSM153212", "GSM153213", "GSM153214", "GSM153215", "GSM153216", "GSM153217", "GSM153218", "GSM153219", "GSM153220", "GSM153221", "GSM153222", "GSM153223", "GSM153224", "GSM153225", "GSM153226", "GSM153227", "GSM153228", "GSM153229", "GSM153230", "GSM153231", "GSM153232", "GSM153233", "GSM153234", "GSM153235", "GSM153236", "GSM153237" ], "type": "tissue", "id": "GDS2546_2" }, { "dataset_id": "GDS2546", "description": "primary prostate tumor", "sample_id": [ "GSM152992", "GSM152993", "GSM152994", "GSM152995", "GSM152996", "GSM152997", "GSM152998", "GSM152999", "GSM153000", "GSM153001", "GSM153002", "GSM153003", "GSM153004", "GSM153005", "GSM153006", "GSM153007", "GSM153008", "GSM153009", "GSM153010", "GSM153011", "GSM153012", "GSM153013", "GSM153014", "GSM153015", "GSM153016", "GSM153017", "GSM153018", "GSM153019", "GSM153020", "GSM153021", "GSM153022", "GSM153023", "GSM153024", "GSM153025", "GSM153026", "GSM153027", "GSM153028", "GSM153029", "GSM153030", "GSM153031", "GSM153032", "GSM153033", "GSM153034", "GSM153035", "GSM153036", "GSM153037", "GSM153038", "GSM153039", "GSM153040", "GSM153041", "GSM153042", "GSM153043", "GSM153044", "GSM153045", "GSM153046", "GSM153047", "GSM153048", "GSM153049", "GSM153050", "GSM153051", "GSM153052", "GSM153053", "GSM187528", "GSM187529", "GSM187530", "GSM187531" ], "type": "tissue", "id": "GDS2546_3" }, { "dataset_id": "GDS2546", "description": "metastatic prostate tumor", "sample_id": [ "GSM152881", "GSM152882", "GSM152883", "GSM152884", "GSM152885", "GSM152886", "GSM152887", "GSM152888", "GSM152889", "GSM152890", "GSM152891", "GSM152892", "GSM152893", "GSM152894", "GSM152895", "GSM152896", "GSM152897", "GSM152898", "GSM152899", "GSM152900", "GSM152901", "GSM152902", "GSM152903", "GSM152904", "GSM152905" ], "type": "tissue", "id": "GDS2546_4" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS2546", "version": 1.0, "instances": "167", "variables": 10311, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2546.tab", "compression": "gz" } ], [ [ "GDS2547.tab" ], { "title": "Metastatic prostate cancer (HG-U95C)", "description": "Analysis of metastatic prostate tumors and primary prostate tumors. Normal tissue adjacent to the tumor and normal donor tissue also examined. Metastasis reflects the most adverse clinical outcome. Results provide insight into the molecular mechanisms underlying the metastatic process.", "type": "Expression profiling by array", "pubmed_id": [ "17430594", "15254046" ], "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "164", "value_type": "count", "reference_series": "GSE6919", "order": "none", "update_date": "May 13 2008", "subsets": [ { "dataset_id": "GDS2547", "description": "normal prostate tissue", "sample_id": [ "GSM152839", "GSM152840", "GSM152841", "GSM152842", "GSM152843", "GSM152844", "GSM152845", "GSM152846", "GSM152847", "GSM152848", "GSM152849", "GSM152850", "GSM152851", "GSM152852", "GSM152853", "GSM152854", "GSM152855" ], "type": "tissue", "id": "GDS2547_1" }, { "dataset_id": "GDS2547", "description": "normal prostate adjacent to tumor", "sample_id": [ "GSM153238", "GSM153239", "GSM153240", "GSM153241", "GSM153242", "GSM153243", "GSM153244", "GSM153245", "GSM153246", "GSM153247", "GSM153248", "GSM153249", "GSM153250", "GSM153251", "GSM153252", "GSM153253", "GSM153254", "GSM153255", "GSM153256", "GSM153257", "GSM153258", "GSM153259", "GSM153260", "GSM153261", "GSM153262", "GSM153263", "GSM153264", "GSM153265", "GSM153266", "GSM153267", "GSM153268", "GSM153269", "GSM153270", "GSM153271", "GSM153272", "GSM153273", "GSM153274", "GSM153275", "GSM153276", "GSM153277", "GSM153278", "GSM153279", "GSM153280", "GSM153281", "GSM153282", "GSM153283", "GSM153284", "GSM153285", "GSM153286", "GSM153287", "GSM153288", "GSM153289", "GSM153290", "GSM153291", "GSM153292", "GSM153293", "GSM153294", "GSM153295" ], "type": "tissue", "id": "GDS2547_2" }, { "dataset_id": "GDS2547", "description": "primary prostate tumor", "sample_id": [ "GSM153054", "GSM153055", "GSM153056", "GSM153057", "GSM153058", "GSM153059", "GSM153060", "GSM153061", "GSM153062", "GSM153063", "GSM153064", "GSM153065", "GSM153066", "GSM153067", "GSM153068", "GSM153069", "GSM153070", "GSM153071", "GSM153072", "GSM153073", "GSM153074", "GSM153075", "GSM153076", "GSM153077", "GSM153078", "GSM153079", "GSM153080", "GSM153081", "GSM153082", "GSM153083", "GSM153084", "GSM153085", "GSM153086", "GSM153087", "GSM153088", "GSM153089", "GSM153090", "GSM153091", "GSM153092", "GSM153093", "GSM153094", "GSM153095", "GSM153096", "GSM153097", "GSM153098", "GSM153099", "GSM153100", "GSM153101", "GSM153102", "GSM153103", "GSM153104", "GSM153106", "GSM153107", "GSM153108", "GSM153109", "GSM153110", "GSM153111", "GSM153112", "GSM153113", "GSM153114", "GSM187532", "GSM187533", "GSM187534", "GSM187535" ], "type": "tissue", "id": "GDS2547_3" }, { "dataset_id": "GDS2547", "description": "metastatic prostate tumor", "sample_id": [ "GSM152906", "GSM152907", "GSM152908", "GSM152909", "GSM152910", "GSM152911", "GSM152912", "GSM152913", "GSM152914", "GSM152915", "GSM152916", "GSM152917", "GSM152918", "GSM152919", "GSM152920", "GSM152921", "GSM152922", "GSM152923", "GSM152924", "GSM152925", "GSM152926", "GSM152927", "GSM152928", "GSM152929", "GSM152930" ], "type": "tissue", "id": "GDS2547_4" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS2547", "version": 1.0, "instances": "164", "variables": 10624, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2547.tab", "compression": "gz" } ], [ [ "GDS2548.tab" ], { "title": "Preeclampsia: uteroplacental tissues", "description": "Analysis of the deciduas, placentas, and fat tissues of preeclamptic women. The decidua and the placenta are two tissues of the uteroplacental unit. Results provide insight into the role of the uteroplacental renin-angiotensin system in the pathogenesis of preeclampsia.", "type": "Expression profiling by array", "pubmed_id": "17261642", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6573", "order": "none", "update_date": "Apr 08 2008", "subsets": [ { "dataset_id": "GDS2548", "description": "control", "sample_id": [ "GSM151955", "GSM151958", "GSM151960" ], "type": "disease state", "id": "GDS2548_1" }, { "dataset_id": "GDS2548", "description": "preeclampsia", "sample_id": [ "GSM151957", "GSM151959", "GSM151961" ], "type": "disease state", "id": "GDS2548_2" }, { "dataset_id": "GDS2548", "description": "fat", "sample_id": [ "GSM151960", "GSM151961" ], "type": "tissue", "id": "GDS2548_3" }, { "dataset_id": "GDS2548", "description": "decidua", "sample_id": [ "GSM151955", "GSM151957" ], "type": "tissue", "id": "GDS2548_4" }, { "dataset_id": "GDS2548", "description": "placenta", "sample_id": [ "GSM151958", "GSM151959" ], "type": "tissue", "id": "GDS2548_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2548", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2548.tab", "compression": "gz" } ], [ [ "GDS2549.tab" ], { "title": "Transcription factor DAF-19 deficient mutants", "description": "Analysis of mutants lacking DAF-19, a transcription factor that regulates genes involved in cilia function. Cilia defects are associated with a variety of human disorders, such as cystic kidney disease. Results provide insight into the mechanisms that regulate the formation and function of cilia.", "type": "Expression profiling by array", "pubmed_id": "17187676", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6563", "order": "none", "update_date": "Apr 08 2008", "subsets": [ { "dataset_id": "GDS2549", "description": "wild type", "sample_id": [ "GSM151747", "GSM151748" ], "type": "genotype/variation", "id": "GDS2549_1" }, { "dataset_id": "GDS2549", "description": "daf-19 mutant", "sample_id": [ "GSM151745", "GSM151746" ], "type": "genotype/variation", "id": "GDS2549_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS2549", "version": 1.0, "instances": "4", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2549.tab", "compression": "gz" } ], [ [ "GDS255.tab" ], { "title": "Cocaine effect on brain", "description": "Comparison of gene expression in brain of cocaine-treated and saline control animals. Amygdala, caudate putamen, nucleus acumbens, prefrontal cortex, and ventral tegmental area analyzed.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE340", "order": "none", "update_date": "Mar 27 2003", "subsets": [ { "dataset_id": "GDS255", "description": "cocaine", "sample_id": [ "GSM4696", "GSM4698", "GSM4699", "GSM4700", "GSM4701" ], "type": "agent", "id": "GDS255_1" }, { "dataset_id": "GDS255", "description": "saline control", "sample_id": [ "GSM4702", "GSM4703", "GSM4704", "GSM4705", "GSM4706" ], "type": "agent", "id": "GDS255_2" }, { "dataset_id": "GDS255", "description": "amygdala", "sample_id": [ "GSM4696", "GSM4702" ], "type": "tissue", "id": "GDS255_3" }, { "dataset_id": "GDS255", "description": "caudate putamen", "sample_id": [ "GSM4698", "GSM4703" ], "type": "tissue", "id": "GDS255_4" }, { "dataset_id": "GDS255", "description": "nucleus acumbens", "sample_id": [ "GSM4699", "GSM4704" ], "type": "tissue", "id": "GDS255_5" }, { "dataset_id": "GDS255", "description": "prefrontal cortex", "sample_id": [ "GSM4700", "GSM4705" ], "type": "tissue", "id": "GDS255_6" }, { "dataset_id": "GDS255", "description": "ventral tegmental area", "sample_id": [ "GSM4701", "GSM4706" ], "type": "tissue", "id": "GDS255_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS255", "version": 1.0, "instances": "10", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS255.tab", "compression": "gz" } ], [ [ "GDS2550.tab" ], { "title": "Recycling factor p110 mutation effect on embryonic development", "description": "Analysis of 3 and 5-day egy mutant embryos, which contain a mutation in recycling factor p110. This mutation leads to microcephaly and thymus hypoplasia. U4/U6 snRNPs are disrupted in egy mutants. Results provide insight into the mechanisms underlying these developmental defects.", "type": "Expression profiling by array", "pubmed_id": "17416673", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE5586", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2550", "description": "3 d", "sample_id": [ "GSM130391", "GSM130392", "GSM130393", "GSM130394" ], "type": "age", "id": "GDS2550_1" }, { "dataset_id": "GDS2550", "description": "5 d", "sample_id": [ "GSM130395", "GSM130396", "GSM130397", "GSM130398", "GSM130399", "GSM130400" ], "type": "age", "id": "GDS2550_2" }, { "dataset_id": "GDS2550", "description": "egy mutant", "sample_id": [ "GSM130391", "GSM130393", "GSM130395", "GSM130397", "GSM130399" ], "type": "genotype/variation", "id": "GDS2550_3" }, { "dataset_id": "GDS2550", "description": "wild type", "sample_id": [ "GSM130392", "GSM130394", "GSM130396", "GSM130398", "GSM130400" ], "type": "genotype/variation", "id": "GDS2550_4" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2550", "version": 1.0, "instances": "10", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2550.tab", "compression": "gz" } ], [ [ "GDS2552.tab" ], { "title": "Small intestine response to Aeromonas caviae infection", "description": "Analysis of neonatal small intestines infected with Aeromonas caviae. A. caviae is associated with human gastrointestinal disease. Strains typically lack virulence factors. Results provide insight into the molecular basis of A. caviae's enteropathogenicity.", "type": "Expression profiling by array", "pubmed_id": "20130691", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE6765", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2552", "description": "A. caviae", "sample_id": [ "GSM155916", "GSM155917", "GSM155918", "GSM155994", "GSM155995" ], "type": "infection", "id": "GDS2552_1" }, { "dataset_id": "GDS2552", "description": "control", "sample_id": [ "GSM155996", "GSM155997", "GSM155998", "GSM155999" ], "type": "infection", "id": "GDS2552_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2552", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2552.tab", "compression": "gz" } ], [ [ "GDS2553.tab" ], { "title": "RNA-binding protein LARK overexpression effect on heads", "description": "Analysis of heads of animals overexpressing the RNA-binding protein LARK. Results provide insight into the identity of transcripts regulated by LARK in the neurons of the central nervous system.", "type": "Expression profiling by array", "pubmed_id": "17971870", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6420", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2553", "description": "LARK overexpression", "sample_id": [ "GSM148016", "GSM148026", "GSM148028" ], "type": "protocol", "id": "GDS2553_1" }, { "dataset_id": "GDS2553", "description": "control", "sample_id": [ "GSM148031", "GSM148032", "GSM148035" ], "type": "protocol", "id": "GDS2553_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2553", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2553.tab", "compression": "gz" } ], [ [ "GDS2554.tab" ], { "title": "Diffuse large B cell lymphoma model", "description": "Analysis of lymphomas of transgenics engineered to constitutively express the dual bromodomain protein Brd2, which causes a malignancy similar to diffuse large B cell lymphoma (DLCL). Results provide insight into the similarity of DLCL lymphomas to activated B cells at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "17166848", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE6136", "order": "none", "update_date": "Apr 11 2008", "subsets": [ { "dataset_id": "GDS2554", "description": "normal resting B Cell", "sample_id": [ "GSM142398", "GSM142400", "GSM142401", "GSM142415", "GSM142421" ], "type": "disease state", "id": "GDS2554_1" }, { "dataset_id": "GDS2554", "description": "normal activated B Cell", "sample_id": [ "GSM142399", "GSM142422", "GSM142423" ], "type": "disease state", "id": "GDS2554_2" }, { "dataset_id": "GDS2554", "description": "marginal lymphoma", "sample_id": [ "GSM142402", "GSM142403", "GSM142404", "GSM142407", "GSM142408", "GSM142409" ], "type": "disease state", "id": "GDS2554_3" }, { "dataset_id": "GDS2554", "description": "transitional lymphoma", "sample_id": [ "GSM142410", "GSM142411", "GSM142412", "GSM142413", "GSM142414" ], "type": "disease state", "id": "GDS2554_4" }, { "dataset_id": "GDS2554", "description": "aggressive lymphoma", "sample_id": [ "GSM142405", "GSM142406", "GSM142416", "GSM142417", "GSM142418", "GSM142419", "GSM142420" ], "type": "disease state", "id": "GDS2554_5" }, { "dataset_id": "GDS2554", "description": "wild type", "sample_id": [ "GSM142398", "GSM142399", "GSM142421", "GSM142422", "GSM142423" ], "type": "genotype/variation", "id": "GDS2554_6" }, { "dataset_id": "GDS2554", "description": "BRD2 transgenic", "sample_id": [ "GSM142400", "GSM142401", "GSM142402", "GSM142403", "GSM142404", "GSM142405", "GSM142406", "GSM142407", "GSM142408", "GSM142409", "GSM142410", "GSM142411", "GSM142412", "GSM142413", "GSM142414", "GSM142415", "GSM142416", "GSM142417", "GSM142418", "GSM142419", "GSM142420" ], "type": "genotype/variation", "id": "GDS2554_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2554", "version": 1.0, "instances": "26", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2554.tab", "compression": "gz" } ], [ [ "GDS2555.tab" ], { "title": "Neurotoxin trimethyltin effect on neuronal cell line: dose response", "description": "Analysis neuronal PC12 cells treated with 1 or 5 uM trimethyltin (TMT). TMT induces neurodegeneration in the hippocampus and limbic system with a delayed onset. Results provide insight into the molecular and cellular mechanisms leading to TMT toxicity.", "type": "Expression profiling by array", "pubmed_id": "17348866", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5073", "order": "none", "update_date": "Feb 06 2007", "subsets": [ { "dataset_id": "GDS2555", "description": "untreated", "sample_id": [ "GSM114191", "GSM114198", "GSM114199" ], "type": "agent", "id": "GDS2555_1" }, { "dataset_id": "GDS2555", "description": "trimethyltin", "sample_id": [ "GSM114192", "GSM114193", "GSM114194", "GSM114195", "GSM114196", "GSM114197" ], "type": "agent", "id": "GDS2555_2" }, { "dataset_id": "GDS2555", "description": "control", "sample_id": [ "GSM114191", "GSM114198", "GSM114199" ], "type": "dose", "id": "GDS2555_3" }, { "dataset_id": "GDS2555", "description": "1 uM", "sample_id": [ "GSM114192", "GSM114194", "GSM114195" ], "type": "dose", "id": "GDS2555_4" }, { "dataset_id": "GDS2555", "description": "5 uM", "sample_id": [ "GSM114193", "GSM114196", "GSM114197" ], "type": "dose", "id": "GDS2555_5" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2555", "version": 1.0, "instances": "9", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2555.tab", "compression": "gz" } ], [ [ "GDS2556.tab" ], { "title": "Embryonic retinal pigment epithelium", "description": "Analysis of microdissected embryonic retinas with or without the retinal pigment epithelium (RPE). The RPE is a thin layer of cells that underlies the neural retina and supports the function and development of photoreceptors. Results provide insight into the development of the RPE.", "type": "Expression profiling by array", "pubmed_id": "17251491", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5048", "order": "none", "update_date": "Apr 11 2008", "subsets": [ { "dataset_id": "GDS2556", "description": "retina", "sample_id": [ "GSM113854", "GSM113855", "GSM113856" ], "type": "tissue", "id": "GDS2556_1" }, { "dataset_id": "GDS2556", "description": "retina with retinal pigment epithelium", "sample_id": [ "GSM113857", "GSM113858", "GSM113859" ], "type": "tissue", "id": "GDS2556_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2556", "version": 1.0, "instances": "6", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2556.tab", "compression": "gz" } ], [ [ "GDS2558.tab" ], { "title": "Octreotide effect on the oxyntic mucosa", "description": "Analysis of the oxyntic mucosa (OM) of animals treated with the long-acting release (LAR) formulation of octreotide (OCT), a somastostatin analog. OCT-LAR causes the regression of gastric ECL-cell carcinoids. Results provide insight into the molecular basis of the antiproliferative effect of OCT.", "type": "Expression profiling by array", "pubmed_id": [ "17210224", "10700043" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5910", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2558", "description": "control", "sample_id": [ "GSM137338" ], "type": "agent", "id": "GDS2558_1" }, { "dataset_id": "GDS2558", "description": "octreotide LAR", "sample_id": [ "GSM137339", "GSM137340", "GSM137341" ], "type": "agent", "id": "GDS2558_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2558", "version": 1.0, "instances": "4", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2558.tab", "compression": "gz" } ], [ [ "GDS2559.tab" ], { "title": "Histone deacetylase inhibition effect on seeds (I)", "description": "Analysis of seeds imbibed for 3 days in the presence of trichostatin A, a specific inhibitor of histone deacetylase. Results provide insight into the role of histone acetylation in the regulation of gene expression during seed germination.", "type": "Expression profiling by array", "pubmed_id": "16307366", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3783", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2559", "description": "trichostatin A", "sample_id": [ "GSM86644", "GSM86677" ], "type": "agent", "id": "GDS2559_1" }, { "dataset_id": "GDS2559", "description": "control", "sample_id": [ "GSM86739", "GSM86741" ], "type": "agent", "id": "GDS2559_2" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS2559", "version": 1.0, "instances": "4", "variables": 7547, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2559.tab", "compression": "gz" } ], [ [ "GDS256.tab" ], { "title": "Pharmacogenomic effect of corticosteroid in skeletal muscle", "description": "Temporal analysis of skeletal muscle response to corticosteroid methylprednisolone. Wistar rats injected with methylprednisolone and skeletal muscle analyzed at various time points up to 72 hours.", "type": "Expression profiling by array", "pubmed_id": "15642798", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "count", "reference_series": "GSE490", "order": "ordered", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS256", "description": "0 minute", "sample_id": [ "GSM5047", "GSM5048", "GSM5049", "GSM5071" ], "type": "time", "id": "GDS256_1" }, { "dataset_id": "GDS256", "description": "15 minute", "sample_id": [ "GSM5075", "GSM5076", "GSM5077" ], "type": "time", "id": "GDS256_2" }, { "dataset_id": "GDS256", "description": "30 minute", "sample_id": [ "GSM5188", "GSM5189", "GSM5190" ], "type": "time", "id": "GDS256_3" }, { "dataset_id": "GDS256", "description": "45 minute", "sample_id": [ "GSM5194", "GSM5195", "GSM5196" ], "type": "time", "id": "GDS256_4" }, { "dataset_id": "GDS256", "description": "1 hour", "sample_id": [ "GSM5180", "GSM5181", "GSM5182" ], "type": "time", "id": "GDS256_5" }, { "dataset_id": "GDS256", "description": "2 hour", "sample_id": [ "GSM5183", "GSM5184", "GSM5185" ], "type": "time", "id": "GDS256_6" }, { "dataset_id": "GDS256", "description": "4 hour", "sample_id": [ "GSM5200", "GSM5201", "GSM5202" ], "type": "time", "id": "GDS256_7" }, { "dataset_id": "GDS256", "description": "5 hour", "sample_id": [ "GSM5203", "GSM5204", "GSM5205" ], "type": "time", "id": "GDS256_8" }, { "dataset_id": "GDS256", "description": "5.5 hour", "sample_id": [ "GSM5191", "GSM5192", "GSM5193" ], "type": "time", "id": "GDS256_9" }, { "dataset_id": "GDS256", "description": "6 hour", "sample_id": [ "GSM5206", "GSM5207", "GSM5208" ], "type": "time", "id": "GDS256_10" }, { "dataset_id": "GDS256", "description": "7 hour", "sample_id": [ "GSM5212", "GSM5213", "GSM5214" ], "type": "time", "id": "GDS256_11" }, { "dataset_id": "GDS256", "description": "8 hour", "sample_id": [ "GSM5215", "GSM5216", "GSM5217" ], "type": "time", "id": "GDS256_12" }, { "dataset_id": "GDS256", "description": "12 hour", "sample_id": [ "GSM5072", "GSM5073", "GSM5074" ], "type": "time", "id": "GDS256_13" }, { "dataset_id": "GDS256", "description": "18 hour", "sample_id": [ "GSM5177", "GSM5178", "GSM5179" ], "type": "time", "id": "GDS256_14" }, { "dataset_id": "GDS256", "description": "30 hour", "sample_id": [ "GSM5186", "GSM5187" ], "type": "time", "id": "GDS256_15" }, { "dataset_id": "GDS256", "description": "48 hour", "sample_id": [ "GSM5197", "GSM5198", "GSM5199" ], "type": "time", "id": "GDS256_16" }, { "dataset_id": "GDS256", "description": "72 hour", "sample_id": [ "GSM5209", "GSM5210", "GSM5211" ], "type": "time", "id": "GDS256_17" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS256", "version": 1.0, "instances": "51", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS256.tab", "compression": "gz" } ], [ [ "GDS2561.tab" ], { "title": "Cdk7 complex subunit menage-a-trois 1 deficiency effect on hearts", "description": "Analysis of 2 and 4 week old hearts ablated for menage-a-trois 1 (MAT1), a subunit of the cdk7/cyclin H/MAT1 heterotrimer. Results provide insight into the role of the cdk7/cyclin H/MAT1 complex in cardiac metabolism.", "type": "Expression profiling by array", "pubmed_id": "17276355", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE6662", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2561", "description": "control", "sample_id": [ "GSM154142", "GSM154143", "GSM154144", "GSM154150", "GSM154151", "GSM154152" ], "type": "protocol", "id": "GDS2561_1" }, { "dataset_id": "GDS2561", "description": "MAT1 ablation", "sample_id": [ "GSM154145", "GSM154146", "GSM154147", "GSM154148", "GSM154149", "GSM154153", "GSM154154", "GSM154155", "GSM154156" ], "type": "protocol", "id": "GDS2561_2" }, { "dataset_id": "GDS2561", "description": "2 wk", "sample_id": [ "GSM154150", "GSM154151", "GSM154152", "GSM154153", "GSM154154", "GSM154155", "GSM154156" ], "type": "age", "id": "GDS2561_3" }, { "dataset_id": "GDS2561", "description": "4 wk", "sample_id": [ "GSM154142", "GSM154143", "GSM154144", "GSM154145", "GSM154146", "GSM154147", "GSM154148", "GSM154149" ], "type": "age", "id": "GDS2561_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2561", "version": 1.0, "instances": "15", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2561.tab", "compression": "gz" } ], [ [ "GDS2562.tab" ], { "title": "Prostate response to castration and subsequent hormone replacement", "description": "Analysis of prostate of animals following castration and subsequent hormone replacement with testosterone. Castration induces prostate involution, while hormone replacement induces regeneration. Results provide insight into the molecular mechanisms regulating prostatic involution and regeneration.", "type": "Expression profiling by array", "pubmed_id": "17288544", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE5901", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2562", "description": "sham", "sample_id": [ "GSM137124", "GSM137125", "GSM137126", "GSM137127", "GSM137128" ], "type": "protocol", "id": "GDS2562_1" }, { "dataset_id": "GDS2562", "description": "3 days castrated", "sample_id": [ "GSM137129", "GSM137130", "GSM137131", "GSM137132", "GSM137133" ], "type": "protocol", "id": "GDS2562_2" }, { "dataset_id": "GDS2562", "description": "14 days castrated", "sample_id": [ "GSM137134", "GSM137135", "GSM137136", "GSM137137", "GSM137138" ], "type": "protocol", "id": "GDS2562_3" }, { "dataset_id": "GDS2562", "description": "14 days castrated, 3 days on testoterone", "sample_id": [ "GSM137139", "GSM137140", "GSM137141", "GSM137142", "GSM137143" ], "type": "protocol", "id": "GDS2562_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2562", "version": 1.0, "instances": "20", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2562.tab", "compression": "gz" } ], [ [ "GDS2563.tab" ], { "title": "Cigarette smoking effect on T lymphocytes", "description": "Analysis of T lymphocytes of 3 male heavy smokers. Results provide insight into sensitivity of T lymphocytes to cigarette smoking.", "type": "Expression profiling by array", "pubmed_id": "17149619", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE4806", "order": "none", "update_date": "Jun 24 2008", "subsets": [ { "dataset_id": "GDS2563", "description": "non-smoker", "sample_id": [ "GSM108347", "GSM108349" ], "type": "specimen", "id": "GDS2563_1" }, { "dataset_id": "GDS2563", "description": "smoker", "sample_id": [ "GSM108348", "GSM108350", "GSM108352" ], "type": "specimen", "id": "GDS2563_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2563", "version": 1.0, "instances": "5", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2563.tab", "compression": "gz" } ], [ [ "GDS2564.tab" ], { "title": "Heat-inducible transcription factor HsfA2 null mutant response to heat shock", "description": "Analysis of HsfA2 null mutant following acclimative heat treatment at 37 degrees C for 1 hour, recovery at 24 degrees C for 2 days, and heat shock at 44 degrees C for 45 minutes. Results provide insight into role of HsfA2 in acquired thermotolerance induced by non-lethal heat treatment.", "type": "Expression profiling by array", "pubmed_id": "17085506", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4760", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2564", "description": "untreated", "sample_id": [ "GSM107436", "GSM107443", "GSM107444", "GSM107445" ], "type": "protocol", "id": "GDS2564_1" }, { "dataset_id": "GDS2564", "description": "37 C", "sample_id": [ "GSM107446", "GSM107577", "GSM107579", "GSM107580" ], "type": "protocol", "id": "GDS2564_2" }, { "dataset_id": "GDS2564", "description": "37 C, 24 C, 44 C", "sample_id": [ "GSM107586", "GSM107587", "GSM107589", "GSM107591" ], "type": "protocol", "id": "GDS2564_3" }, { "dataset_id": "GDS2564", "description": "wild type", "sample_id": [ "GSM107436", "GSM107443", "GSM107446", "GSM107577", "GSM107586", "GSM107587" ], "type": "genotype/variation", "id": "GDS2564_4" }, { "dataset_id": "GDS2564", "description": "HsfA2 null", "sample_id": [ "GSM107444", "GSM107445", "GSM107579", "GSM107580", "GSM107589", "GSM107591" ], "type": "genotype/variation", "id": "GDS2564_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2564", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2564.tab", "compression": "gz" } ], [ [ "GDS2565.tab" ], { "title": "Endothelial cell response to ultrafine particles", "description": "Analysis of pulmonary artery endothelial cells HPAEC exposed to ultrafine particles for 4 hours. Results provide insight into the molecular basis of the association of pollutant particle exposure to increased cardiovascular mortality and morbidity.", "type": "Expression profiling by array", "pubmed_id": "17450221", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4567", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2565", "description": "control", "sample_id": [ "GSM101996", "GSM101997", "GSM101998", "GSM101999" ], "type": "agent", "id": "GDS2565_1" }, { "dataset_id": "GDS2565", "description": "ultrafine particles", "sample_id": [ "GSM102000", "GSM102001", "GSM102002", "GSM102003" ], "type": "agent", "id": "GDS2565_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2565", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2565.tab", "compression": "gz" } ], [ [ "GDS2566.tab" ], { "title": "Bis(2-chloroethoxy)methane effect on hearts: time course", "description": "Analysis of hearts exposed to the heart toxin bis(2-chloroethoxy)methane (CEM) for 2 or 5 days. Toxicity occurs at day 2 of CEM dosing, and recovery at day 5 despite continued dosing. Results provide insight into the molecular basis of heart toxicity and recovery during the exposure to CEM.", "type": "Expression profiling by array", "pubmed_id": "16844662", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE4254", "order": "ordered", "update_date": "Feb 12 2007", "subsets": [ { "dataset_id": "GDS2566", "description": "2 d", "sample_id": [ "GSM96935", "GSM96936", "GSM96937", "GSM96938", "GSM96939", "GSM96940" ], "type": "time", "id": "GDS2566_1" }, { "dataset_id": "GDS2566", "description": "5 d", "sample_id": [ "GSM96941", "GSM96942", "GSM96943", "GSM96944", "GSM96945", "GSM96946" ], "type": "time", "id": "GDS2566_2" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2566", "version": 1.0, "instances": "12", "variables": 17252, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2566.tab", "compression": "gz" } ], [ [ "GDS2567.tab" ], { "title": "Banded hedgehog effect on the pronephric nephron development", "description": "Analysis of pronephric explants dissected from embryos previously injected with banded hedgehog mRNA. Hedgehog suppresses the development of the pronephric kidney tubule but not that of the pronephric glomus. Results provide insight into the molecular basis of this inhibitory effect.", "type": "Expression profiling by array", "pubmed_id": "16872594", "platform": "GPL1318", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15611", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3712", "order": "none", "update_date": "Jun 23 2008", "subsets": [ { "dataset_id": "GDS2567", "description": "control", "sample_id": [ "GSM85709", "GSM85710", "GSM85711" ], "type": "agent", "id": "GDS2567_1" }, { "dataset_id": "GDS2567", "description": "banded hedgehog", "sample_id": [ "GSM85712", "GSM85713", "GSM85714" ], "type": "agent", "id": "GDS2567_2" } ], "taxid": "8355", "genes": 13132, "aggregation_function": "mean", "name": "GDS2567", "version": 1.0, "instances": "6", "variables": 13134, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2567.tab", "compression": "gz" } ], [ [ "GDS2569.tab" ], { "title": "RNA polymerase II mutants (I)", "description": "Analysis of RNA polymerase II (RNAPII) RPB1 mutants that are sensitive to the nucleotide-depleting drug 6-azauracil (6AU). Results provide further insight into the mechanisms of RNAPII transcription.", "type": "Expression profiling by array", "pubmed_id": "16510790", "platform": "GPL2547", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11734", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2831", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2569", "description": "wild type", "sample_id": [ "GSM61941" ], "type": "genotype/variation", "id": "GDS2569_1" }, { "dataset_id": "GDS2569", "description": "D260N mutant", "sample_id": [ "GSM61943" ], "type": "genotype/variation", "id": "GDS2569_2" }, { "dataset_id": "GDS2569", "description": "D261N mutant", "sample_id": [ "GSM61952" ], "type": "genotype/variation", "id": "GDS2569_3" }, { "dataset_id": "GDS2569", "description": "R320C mutant", "sample_id": [ "GSM61954" ], "type": "genotype/variation", "id": "GDS2569_4" }, { "dataset_id": "GDS2569", "description": "N488D muant", "sample_id": [ "GSM61956" ], "type": "genotype/variation", "id": "GDS2569_5" }, { "dataset_id": "GDS2569", "description": "E1103G mutant", "sample_id": [ "GSM61958" ], "type": "genotype/variation", "id": "GDS2569_6" }, { "dataset_id": "GDS2569", "description": "E1230K mutant", "sample_id": [ "GSM61960" ], "type": "genotype/variation", "id": "GDS2569_7" } ], "taxid": "4932", "genes": 5862, "aggregation_function": "mean", "name": "GDS2569", "version": 1.0, "instances": "7", "variables": 5864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2569.tab", "compression": "gz" } ], [ [ "GDS2570.tab" ], { "title": "RNA polymerase II mutants (II)", "description": "Analysis of RNA polymerase II (RNAPII) RPB1 mutants that are sensitive to the nucleotide-depleting drug 6-azauracil (6AU). Results provide further insight into the mechanisms of RNAPII transcription.", "type": "Expression profiling by array", "pubmed_id": "16510790", "platform": "GPL2547", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11734", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE2831", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2570", "description": "wild type", "sample_id": [ "GSM61942" ], "type": "genotype/variation", "id": "GDS2570_1" }, { "dataset_id": "GDS2570", "description": "D260N mutant", "sample_id": [ "GSM61944" ], "type": "genotype/variation", "id": "GDS2570_2" }, { "dataset_id": "GDS2570", "description": "D261N mutant", "sample_id": [ "GSM61953" ], "type": "genotype/variation", "id": "GDS2570_3" }, { "dataset_id": "GDS2570", "description": "R320C mutant", "sample_id": [ "GSM61955" ], "type": "genotype/variation", "id": "GDS2570_4" }, { "dataset_id": "GDS2570", "description": "N488D mutant", "sample_id": [ "GSM61957" ], "type": "genotype/variation", "id": "GDS2570_5" }, { "dataset_id": "GDS2570", "description": "E1103G mutant", "sample_id": [ "GSM61959" ], "type": "genotype/variation", "id": "GDS2570_6" }, { "dataset_id": "GDS2570", "description": "E1230K mutant", "sample_id": [ "GSM61961" ], "type": "genotype/variation", "id": "GDS2570_7" } ], "taxid": "4932", "genes": 5862, "aggregation_function": "mean", "name": "GDS2570", "version": 1.0, "instances": "7", "variables": 5864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2570.tab", "compression": "gz" } ], [ [ "GDS2571.tab" ], { "title": "Bone morphogenic protein 6 effect on an endothelial cell line: time course", "description": "Analysis of endothelial cells treated for up to 24 hours with bone morphogenic protein 6 (BMP6). BMP proteins participate in the regulation of angiogenesis in physiological and pathological conditions. Results provide insight into the mechanisms that contribute to BMP-dependent angiogenic signaling.", "type": "Expression profiling by array", "pubmed_id": "17119124", "platform": "GPL922", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE4909", "order": "none", "update_date": "Feb 13 2007", "subsets": [ { "dataset_id": "GDS2571", "description": "mock", "sample_id": [ "GSM110201", "GSM110202", "GSM110203" ], "type": "agent", "id": "GDS2571_1" }, { "dataset_id": "GDS2571", "description": "BMP6", "sample_id": [ "GSM110204", "GSM110205", "GSM110206", "GSM110207", "GSM110208", "GSM110209", "GSM110210", "GSM110211", "GSM110212" ], "type": "agent", "id": "GDS2571_2" }, { "dataset_id": "GDS2571", "description": "control", "sample_id": [ "GSM110201", "GSM110202", "GSM110203" ], "type": "time", "id": "GDS2571_3" }, { "dataset_id": "GDS2571", "description": "4 h", "sample_id": [ "GSM110204", "GSM110205", "GSM110206" ], "type": "time", "id": "GDS2571_4" }, { "dataset_id": "GDS2571", "description": "12 h", "sample_id": [ "GSM110207", "GSM110208", "GSM110209" ], "type": "time", "id": "GDS2571_5" }, { "dataset_id": "GDS2571", "description": "24 h", "sample_id": [ "GSM110210", "GSM110211", "GSM110212" ], "type": "time", "id": "GDS2571_6" } ], "taxid": "10090", "genes": 17212, "aggregation_function": "mean", "name": "GDS2571", "version": 1.0, "instances": "12", "variables": 17215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2571.tab", "compression": "gz" } ], [ [ "GDS2572.tab" ], { "title": "Tocopherol deficient mutant seedlings", "description": "Analysis of 1 and 3 day old seedlings disrupted for tocopherol cyclase (vte1) or homogentisate phytyl transferase (vte2). Both mutants lack tocopherols, but vte1 mutants accumulate the tocopherol pathway intermediate DMPBQ. Results provide insight into seedling response to tocopherol deficiency.", "type": "Expression profiling by array", "pubmed_id": "17194769", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE4847", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2572", "description": "wild type", "sample_id": [ "GSM109107", "GSM109108", "GSM109109", "GSM109116", "GSM109117", "GSM109118" ], "type": "genotype/variation", "id": "GDS2572_1" }, { "dataset_id": "GDS2572", "description": "vte1 mutant", "sample_id": [ "GSM109110", "GSM109111", "GSM109112", "GSM109119", "GSM109120", "GSM109121" ], "type": "genotype/variation", "id": "GDS2572_2" }, { "dataset_id": "GDS2572", "description": "vte2 mutant", "sample_id": [ "GSM109113", "GSM109114", "GSM109115", "GSM109122", "GSM109123", "GSM109124" ], "type": "genotype/variation", "id": "GDS2572_3" }, { "dataset_id": "GDS2572", "description": "1 d", "sample_id": [ "GSM109107", "GSM109108", "GSM109109", "GSM109110", "GSM109111", "GSM109112", "GSM109113", "GSM109114", "GSM109115" ], "type": "age", "id": "GDS2572_4" }, { "dataset_id": "GDS2572", "description": "3 d", "sample_id": [ "GSM109116", "GSM109117", "GSM109118", "GSM109119", "GSM109120", "GSM109121", "GSM109122", "GSM109123", "GSM109124" ], "type": "age", "id": "GDS2572_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2572", "version": 1.0, "instances": "18", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2572.tab", "compression": "gz" } ], [ [ "GDS2573.tab" ], { "title": "Far-upstream element binding protein inactivation", "description": "Analysis of primary skin fibroblasts (Hs68) following siRNA knockdown of far-upstream element binding protein (FBP) 1, 2, or 3. Results provide insight into the function of each member of the FBP transactivator family.", "type": "Expression profiling by array", "pubmed_id": "16914741", "platform": "GPL3779", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "35024", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4914", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2573", "description": "FBP1 knockdown", "sample_id": [ "GSM110526", "GSM110529" ], "type": "protocol", "id": "GDS2573_1" }, { "dataset_id": "GDS2573", "description": "FBP2 knockdown", "sample_id": [ "GSM110528", "GSM110530" ], "type": "protocol", "id": "GDS2573_2" }, { "dataset_id": "GDS2573", "description": "FBP3 knockdown", "sample_id": [ "GSM110527", "GSM110531" ], "type": "protocol", "id": "GDS2573_3" } ], "taxid": "9606", "genes": 22048, "aggregation_function": "mean", "name": "GDS2573", "version": 1.0, "instances": "6", "variables": 22050, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2573.tab", "compression": "gz" } ], [ [ "GDS2574.tab" ], { "title": "Wnt4 mutation effect on female embryonic gonads", "description": "Analysis of gonads from Wnt4 homozygous mutant female embryos. In Wnt4 mutant female gonads, endothelial cells migrate from the mesonephros and form a male-like coelomic vessel. Results provide insight into the regulation of sex specific vascular development.", "type": "Expression profiling by array", "pubmed_id": "16844427", "platform": "GPL3108", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "17664", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE3650", "order": "none", "update_date": "Feb 13 2007", "subsets": [ { "dataset_id": "GDS2574", "description": "wild type", "sample_id": [ "GSM84973", "GSM84974" ], "type": "genotype/variation", "id": "GDS2574_1" }, { "dataset_id": "GDS2574", "description": "Wnt4 mutant", "sample_id": [ "GSM84975", "GSM84976" ], "type": "genotype/variation", "id": "GDS2574_2" }, { "dataset_id": "GDS2574", "description": "male", "sample_id": [ "GSM84973", "GSM84974" ], "type": "gender", "id": "GDS2574_3" }, { "dataset_id": "GDS2574", "description": "female", "sample_id": [ "GSM84975", "GSM84976" ], "type": "gender", "id": "GDS2574_4" } ], "taxid": "10090", "genes": 15407, "aggregation_function": "mean", "name": "GDS2574", "version": 1.0, "instances": "4", "variables": 15410, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2574.tab", "compression": "gz" } ], [ [ "GDS2575.tab" ], { "title": "Homeobox protein Hoxb1a deficiency effect on the embryonic hindbrain", "description": "Analysis of hindbrain rhombomere 4 tissues of embryos deficient for the homeobox protein Hoxb1a. Hoxb1a confers regional identity to rhombomere 4 in hindbrain development. Results provide insight into the mechanisms controlling the development of regional identity in the hindbrain.", "type": "Expression profiling by array", "pubmed_id": "17651720", "platform": "GPL3721", "platform_organism": "Danio rerio", "platform_technology_type": "spotted oligonucleotide", "feature_count": "16399", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5199", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2575", "description": "rhombomere 2", "sample_id": [ "GSM116364", "GSM116367", "GSM116368" ], "type": "tissue", "id": "GDS2575_1" }, { "dataset_id": "GDS2575", "description": "rhombomere 4", "sample_id": [ "GSM116361", "GSM116363", "GSM116366", "GSM116362", "GSM116365", "GSM116369" ], "type": "tissue", "id": "GDS2575_2" }, { "dataset_id": "GDS2575", "description": "control", "sample_id": [ "GSM116361", "GSM116363", "GSM116364", "GSM116366", "GSM116367", "GSM116368" ], "type": "strain", "id": "GDS2575_3" }, { "dataset_id": "GDS2575", "description": "Hoxb1a deficient", "sample_id": [ "GSM116362", "GSM116365", "GSM116369" ], "type": "strain", "id": "GDS2575_4" } ], "taxid": "7955", "genes": 15715, "aggregation_function": "mean", "name": "GDS2575", "version": 1.0, "instances": "9", "variables": 15718, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2575.tab", "compression": "gz" } ], [ [ "GDS2576.tab" ], { "title": "Microgravity effect on osteoblasts", "description": "Analysis of 2T3 osteoblasts following 3 days of simulated microgravity using the rotating wall vessel (RWV). Weightlessness or microgravity of spaceflight induces bone loss due in part to decreased bone formation. Results provide insight into the molecular mechanisms regulating bone formation.", "type": "Expression profiling by array", "pubmed_id": "17243119", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4658", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2576", "description": "control", "sample_id": [ "GSM105147", "GSM105148", "GSM105149" ], "type": "protocol", "id": "GDS2576_1" }, { "dataset_id": "GDS2576", "description": "microgravity", "sample_id": [ "GSM105150", "GSM105151", "GSM105152" ], "type": "protocol", "id": "GDS2576_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2576", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2576.tab", "compression": "gz" } ], [ [ "GDS2577.tab" ], { "title": "Regenerating liver and developing embryonic liver comparison", "description": "Comparison of regenerating liver to developing embryonic liver. Regenerating liver examined at time points up to 72 hours after partial hepatectomy. Developing liver examined up to 16.5 days post conception (dpc). Results provide insight into molecular mechanisms regulating renewal and repair.", "type": "Expression profiling by array", "pubmed_id": "17227769", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE6998", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2577", "description": "developing liver", "sample_id": [ "GSM161128", "GSM161129", "GSM161130", "GSM161131", "GSM161132", "GSM161133", "GSM161134", "GSM161135", "GSM161136", "GSM161137", "GSM161138", "GSM161139" ], "type": "specimen", "id": "GDS2577_1" }, { "dataset_id": "GDS2577", "description": "regenerating liver", "sample_id": [ "GSM161108", "GSM161109", "GSM161110", "GSM161111", "GSM161112", "GSM161113", "GSM161114", "GSM161115", "GSM161116", "GSM161117", "GSM161118", "GSM161119", "GSM161120", "GSM161121", "GSM161122", "GSM161123", "GSM161124", "GSM161125", "GSM161126", "GSM161127" ], "type": "specimen", "id": "GDS2577_2" }, { "dataset_id": "GDS2577", "description": "0 h", "sample_id": [ "GSM161108", "GSM161109" ], "type": "time", "id": "GDS2577_3" }, { "dataset_id": "GDS2577", "description": "1 h", "sample_id": [ "GSM161110", "GSM161111" ], "type": "time", "id": "GDS2577_4" }, { "dataset_id": "GDS2577", "description": "2 h", "sample_id": [ "GSM161112", "GSM161113" ], "type": "time", "id": "GDS2577_5" }, { "dataset_id": "GDS2577", "description": "6 h", "sample_id": [ "GSM161114", "GSM161115" ], "type": "time", "id": "GDS2577_6" }, { "dataset_id": "GDS2577", "description": "12 h", "sample_id": [ "GSM161116", "GSM161117" ], "type": "time", "id": "GDS2577_7" }, { "dataset_id": "GDS2577", "description": "18 h", "sample_id": [ "GSM161118", "GSM161119" ], "type": "time", "id": "GDS2577_8" }, { "dataset_id": "GDS2577", "description": "24 h", "sample_id": [ "GSM161120", "GSM161121" ], "type": "time", "id": "GDS2577_9" }, { "dataset_id": "GDS2577", "description": "30 h", "sample_id": [ "GSM161122", "GSM161123" ], "type": "time", "id": "GDS2577_10" }, { "dataset_id": "GDS2577", "description": "48 h", "sample_id": [ "GSM161124", "GSM161125" ], "type": "time", "id": "GDS2577_11" }, { "dataset_id": "GDS2577", "description": "72 h", "sample_id": [ "GSM161126", "GSM161127" ], "type": "time", "id": "GDS2577_12" }, { "dataset_id": "GDS2577", "description": "10.5 dpc", "sample_id": [ "GSM161128", "GSM161129" ], "type": "time", "id": "GDS2577_13" }, { "dataset_id": "GDS2577", "description": "11.5 dpc", "sample_id": [ "GSM161130", "GSM161131" ], "type": "time", "id": "GDS2577_14" }, { "dataset_id": "GDS2577", "description": "12.5 dpc", "sample_id": [ "GSM161132", "GSM161133" ], "type": "time", "id": "GDS2577_15" }, { "dataset_id": "GDS2577", "description": "13.5 dpc", "sample_id": [ "GSM161134", "GSM161135" ], "type": "time", "id": "GDS2577_16" }, { "dataset_id": "GDS2577", "description": "14.5 dpc", "sample_id": [ "GSM161136", "GSM161137" ], "type": "time", "id": "GDS2577_17" }, { "dataset_id": "GDS2577", "description": "16.5 dpc", "sample_id": [ "GSM161138", "GSM161139" ], "type": "time", "id": "GDS2577_18" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2577", "version": 1.0, "instances": "32", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2577.tab", "compression": "gz" } ], [ [ "GDS2578.tab" ], { "title": "Calcium chloride and glycerol wash effect: time course", "description": "Analysis of MG1655 cells after washing with 0.1 M calcium chloride and 15% glycerol and subsequent incubation on ice. Cells on ice examined at various time points up to 60 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4358", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2578", "description": "2 min", "sample_id": [ "GSM99087" ], "type": "time", "id": "GDS2578_1" }, { "dataset_id": "GDS2578", "description": "5 min", "sample_id": [ "GSM99088" ], "type": "time", "id": "GDS2578_2" }, { "dataset_id": "GDS2578", "description": "10 min", "sample_id": [ "GSM99089" ], "type": "time", "id": "GDS2578_3" }, { "dataset_id": "GDS2578", "description": "20 min", "sample_id": [ "GSM99090" ], "type": "time", "id": "GDS2578_4" }, { "dataset_id": "GDS2578", "description": "40 min", "sample_id": [ "GSM99091" ], "type": "time", "id": "GDS2578_5" }, { "dataset_id": "GDS2578", "description": "60 min", "sample_id": [ "GSM99092" ], "type": "time", "id": "GDS2578_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2578", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2578.tab", "compression": "gz" } ], [ [ "GDS2579.tab" ], { "title": "Ampicillin treatment: time course", "description": "Analysis of MG1655 cells at various time points up to 75 minutes following treatment with 100 ug/ml ampicillin. Ampicillin added to cells grown in M9 media supplemented with glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4357", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2579", "description": "0 min", "sample_id": [ "GSM99081" ], "type": "time", "id": "GDS2579_1" }, { "dataset_id": "GDS2579", "description": "15 min", "sample_id": [ "GSM99082" ], "type": "time", "id": "GDS2579_2" }, { "dataset_id": "GDS2579", "description": "30 min", "sample_id": [ "GSM99083" ], "type": "time", "id": "GDS2579_3" }, { "dataset_id": "GDS2579", "description": "45 min", "sample_id": [ "GSM99084" ], "type": "time", "id": "GDS2579_4" }, { "dataset_id": "GDS2579", "description": "60 min", "sample_id": [ "GSM99085" ], "type": "time", "id": "GDS2579_5" }, { "dataset_id": "GDS2579", "description": "75 min", "sample_id": [ "GSM99086" ], "type": "time", "id": "GDS2579_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2579", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2579.tab", "compression": "gz" } ], [ [ "GDS258.tab" ], { "title": "Juvenile dermatomyositis muscle profile (HuGeneFL)", "description": "Examination of skeletal muscle from juvenile dermatomyositis (JDM) patients, a common pediatric inflammatory myopathy. Muscle biopsies processed singly or in mixed groups of two. Patients genotyped for TNFalpha which is associated with prolonged disease.", "type": "Expression profiling by array", "pubmed_id": "11937576", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE493", "order": "none", "update_date": "Jul 01 2003", "subsets": [ { "dataset_id": "GDS258", "description": "NLGG-126", "sample_id": [ "GSM4358" ], "type": "specimen", "id": "GDS258_1" }, { "dataset_id": "GDS258", "description": "NSGG-(93-75)", "sample_id": [ "GSM4359" ], "type": "specimen", "id": "GDS258_2" }, { "dataset_id": "GDS258", "description": "NSGG-97", "sample_id": [ "GSM4360" ], "type": "specimen", "id": "GDS258_3" }, { "dataset_id": "GDS258", "description": "PLAA-111", "sample_id": [ "GSM4361" ], "type": "specimen", "id": "GDS258_4" }, { "dataset_id": "GDS258", "description": "PLGG-(136-129)", "sample_id": [ "GSM4362" ], "type": "specimen", "id": "GDS258_5" }, { "dataset_id": "GDS258", "description": "PSGA-(133-188)", "sample_id": [ "GSM4365", "GSM4366" ], "type": "specimen", "id": "GDS258_6" }, { "dataset_id": "GDS258", "description": "PSGG-112", "sample_id": [ "GSM4369", "GSM4370" ], "type": "specimen", "id": "GDS258_7" }, { "dataset_id": "GDS258", "description": "PSGG-121", "sample_id": [ "GSM4371" ], "type": "specimen", "id": "GDS258_8" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS258", "version": 1.0, "instances": "10", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS258.tab", "compression": "gz" } ], [ [ "GDS2580.tab" ], { "title": "Recovery from stationary phase: time course (I)", "description": "Analysis of MG1655 cells transferred from stationary phase LB culture into fresh LB media with 0.2% glucose to OD of 0.4. Recovering cells examined at various time points up to 90 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log2 ratio", "reference_series": "GSE4359", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2580", "description": "0 min", "sample_id": [ "GSM99093" ], "type": "time", "id": "GDS2580_1" }, { "dataset_id": "GDS2580", "description": "15 min", "sample_id": [ "GSM99094" ], "type": "time", "id": "GDS2580_2" }, { "dataset_id": "GDS2580", "description": "30 min", "sample_id": [ "GSM99095" ], "type": "time", "id": "GDS2580_3" }, { "dataset_id": "GDS2580", "description": "45 min", "sample_id": [ "GSM99096" ], "type": "time", "id": "GDS2580_4" }, { "dataset_id": "GDS2580", "description": "60 min", "sample_id": [ "GSM99097" ], "type": "time", "id": "GDS2580_5" }, { "dataset_id": "GDS2580", "description": "75 min", "sample_id": [ "GSM99098" ], "type": "time", "id": "GDS2580_6" }, { "dataset_id": "GDS2580", "description": "90 min", "sample_id": [ "GSM99099" ], "type": "time", "id": "GDS2580_7" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2580", "version": 1.0, "instances": "7", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2580.tab", "compression": "gz" } ], [ [ "GDS2581.tab" ], { "title": "Indole acrylate treatment: time course (I)", "description": "Analysis of MG1655 cells at various time points up to 60 minutes following treatment with 10 ug/ml indole acrylate. Indole acrylate added to cells growing in Bonner-Vogel media. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4360", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2581", "description": "5 min", "sample_id": [ "GSM99100" ], "type": "time", "id": "GDS2581_1" }, { "dataset_id": "GDS2581", "description": "15 min", "sample_id": [ "GSM99101" ], "type": "time", "id": "GDS2581_2" }, { "dataset_id": "GDS2581", "description": "30 min", "sample_id": [ "GSM99102" ], "type": "time", "id": "GDS2581_3" }, { "dataset_id": "GDS2581", "description": "60 min", "sample_id": [ "GSM99103" ], "type": "time", "id": "GDS2581_4" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2581", "version": 1.0, "instances": "4", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2581.tab", "compression": "gz" } ], [ [ "GDS2582.tab" ], { "title": "Indole acrylate treatment: time course (II)", "description": "Analysis of MG1655 cells at various time points up to 60 minutes following treatment with 15 ug/ml indole acrylate. Indole acrylate added to cells growing in Bonner-Vogel media. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4361", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2582", "description": "5 min", "sample_id": [ "GSM99104" ], "type": "time", "id": "GDS2582_1" }, { "dataset_id": "GDS2582", "description": "15 min", "sample_id": [ "GSM99105" ], "type": "time", "id": "GDS2582_2" }, { "dataset_id": "GDS2582", "description": "30 min", "sample_id": [ "GSM99106" ], "type": "time", "id": "GDS2582_3" }, { "dataset_id": "GDS2582", "description": "60 min", "sample_id": [ "GSM99107" ], "type": "time", "id": "GDS2582_4" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2582", "version": 1.0, "instances": "4", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2582.tab", "compression": "gz" } ], [ [ "GDS2583.tab" ], { "title": "Kanamycin treatment: time course", "description": "Analysis of MG1655 cells at various time points up to 75 minutes following treatment with 100 ug/ml kanamycin. Kanamycin added to cells grown in M9 media supplemented with glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4362", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2583", "description": "0 min", "sample_id": [ "GSM99108" ], "type": "time", "id": "GDS2583_1" }, { "dataset_id": "GDS2583", "description": "15 min", "sample_id": [ "GSM99109" ], "type": "time", "id": "GDS2583_2" }, { "dataset_id": "GDS2583", "description": "30 min", "sample_id": [ "GSM99110" ], "type": "time", "id": "GDS2583_3" }, { "dataset_id": "GDS2583", "description": "45 min", "sample_id": [ "GSM99111" ], "type": "time", "id": "GDS2583_4" }, { "dataset_id": "GDS2583", "description": "60 min", "sample_id": [ "GSM99112" ], "type": "time", "id": "GDS2583_5" }, { "dataset_id": "GDS2583", "description": "75 min", "sample_id": [ "GSM99113" ], "type": "time", "id": "GDS2583_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2583", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2583.tab", "compression": "gz" } ], [ [ "GDS2584.tab" ], { "title": "Recovery from stationary phase: time course (II)", "description": "Analysis of MG1655 cells transferred from stationary phase LB culture into fresh LB media with 0.2% glucose. Recovering cells examined at various time points up to 1440 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log2 ratio", "reference_series": "GSE4363", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2584", "description": "0 min", "sample_id": [ "GSM99114" ], "type": "time", "id": "GDS2584_1" }, { "dataset_id": "GDS2584", "description": "78 min", "sample_id": [ "GSM99115" ], "type": "time", "id": "GDS2584_2" }, { "dataset_id": "GDS2584", "description": "105 min", "sample_id": [ "GSM99116" ], "type": "time", "id": "GDS2584_3" }, { "dataset_id": "GDS2584", "description": "133 min", "sample_id": [ "GSM99117" ], "type": "time", "id": "GDS2584_4" }, { "dataset_id": "GDS2584", "description": "163 min", "sample_id": [ "GSM99118" ], "type": "time", "id": "GDS2584_5" }, { "dataset_id": "GDS2584", "description": "191 min", "sample_id": [ "GSM99119" ], "type": "time", "id": "GDS2584_6" }, { "dataset_id": "GDS2584", "description": "218 min", "sample_id": [ "GSM99120" ], "type": "time", "id": "GDS2584_7" }, { "dataset_id": "GDS2584", "description": "261 min", "sample_id": [ "GSM99121" ], "type": "time", "id": "GDS2584_8" }, { "dataset_id": "GDS2584", "description": "313 min", "sample_id": [ "GSM99122" ], "type": "time", "id": "GDS2584_9" }, { "dataset_id": "GDS2584", "description": "443 min", "sample_id": [ "GSM99123" ], "type": "time", "id": "GDS2584_10" }, { "dataset_id": "GDS2584", "description": "1440 min", "sample_id": [ "GSM99124" ], "type": "time", "id": "GDS2584_11" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2584", "version": 1.0, "instances": "11", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2584.tab", "compression": "gz" } ], [ [ "GDS2585.tab" ], { "title": "Recovery from stationary phase: time course (III)", "description": "Analysis of MG1655 cells transferred from stationary phase LB culture into fresh LB media with 0.2% glucose to OD of 1.0. Recovering cells examined at various time points up to 90 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log2 ratio", "reference_series": "GSE4364", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2585", "description": "0 min", "sample_id": [ "GSM99125" ], "type": "time", "id": "GDS2585_1" }, { "dataset_id": "GDS2585", "description": "15 min", "sample_id": [ "GSM99126" ], "type": "time", "id": "GDS2585_2" }, { "dataset_id": "GDS2585", "description": "30 min", "sample_id": [ "GSM99127" ], "type": "time", "id": "GDS2585_3" }, { "dataset_id": "GDS2585", "description": "45 min", "sample_id": [ "GSM99128" ], "type": "time", "id": "GDS2585_4" }, { "dataset_id": "GDS2585", "description": "60 min", "sample_id": [ "GSM99129" ], "type": "time", "id": "GDS2585_5" }, { "dataset_id": "GDS2585", "description": "75 min", "sample_id": [ "GSM99130" ], "type": "time", "id": "GDS2585_6" }, { "dataset_id": "GDS2585", "description": "90 min", "sample_id": [ "GSM99131" ], "type": "time", "id": "GDS2585_7" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2585", "version": 1.0, "instances": "7", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2585.tab", "compression": "gz" } ], [ [ "GDS2586.tab" ], { "title": "Recovery from stationary phase: time course (IV)", "description": "Analysis of MG1655 cells transferred from stationary phase culture into media with 10 mM sodium phosphate. Recovering cells examined at various time points up to 90 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log2 ratio", "reference_series": "GSE4370", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2586", "description": "0 min", "sample_id": [ "GSM99157" ], "type": "time", "id": "GDS2586_1" }, { "dataset_id": "GDS2586", "description": "15 min", "sample_id": [ "GSM99158" ], "type": "time", "id": "GDS2586_2" }, { "dataset_id": "GDS2586", "description": "30 min", "sample_id": [ "GSM99159" ], "type": "time", "id": "GDS2586_3" }, { "dataset_id": "GDS2586", "description": "45 min", "sample_id": [ "GSM99160" ], "type": "time", "id": "GDS2586_4" }, { "dataset_id": "GDS2586", "description": "60 min", "sample_id": [ "GSM99161" ], "type": "time", "id": "GDS2586_5" }, { "dataset_id": "GDS2586", "description": "75 min", "sample_id": [ "GSM99162" ], "type": "time", "id": "GDS2586_6" }, { "dataset_id": "GDS2586", "description": "90 min", "sample_id": [ "GSM99163" ], "type": "time", "id": "GDS2586_7" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2586", "version": 1.0, "instances": "7", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2586.tab", "compression": "gz" } ], [ [ "GDS2587.tab" ], { "title": "Recovery from stationary phase: time course (V)", "description": "Analysis of MG1655 cells at various time points up to 90 minutes following transfer from stationary phase culture into media with 10 mM sodium phosphate and 0.2% glucose to OD of 0.4. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log2 ratio", "reference_series": "GSE4371", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2587", "description": "0 min", "sample_id": [ "GSM99164" ], "type": "time", "id": "GDS2587_1" }, { "dataset_id": "GDS2587", "description": "15 min", "sample_id": [ "GSM99165" ], "type": "time", "id": "GDS2587_2" }, { "dataset_id": "GDS2587", "description": "30 min", "sample_id": [ "GSM99166" ], "type": "time", "id": "GDS2587_3" }, { "dataset_id": "GDS2587", "description": "45 min", "sample_id": [ "GSM99167" ], "type": "time", "id": "GDS2587_4" }, { "dataset_id": "GDS2587", "description": "60 min", "sample_id": [ "GSM99168" ], "type": "time", "id": "GDS2587_5" }, { "dataset_id": "GDS2587", "description": "75 min", "sample_id": [ "GSM99169" ], "type": "time", "id": "GDS2587_6" }, { "dataset_id": "GDS2587", "description": "90 min", "sample_id": [ "GSM99170" ], "type": "time", "id": "GDS2587_7" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2587", "version": 1.0, "instances": "7", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2587.tab", "compression": "gz" } ], [ [ "GDS2588.tab" ], { "title": "Anaerobic growth (I)", "description": "Analysis of MG1655 cells at various phases of growth up to stationary phase. Cells were grown anaerobically in M9 media with glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "mixed", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4373", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2588", "description": "OD 0.03", "sample_id": [ "GSM99175" ], "type": "age", "id": "GDS2588_1" }, { "dataset_id": "GDS2588", "description": "OD 0.2", "sample_id": [ "GSM99176" ], "type": "age", "id": "GDS2588_2" }, { "dataset_id": "GDS2588", "description": "OD 0.35", "sample_id": [ "GSM99177" ], "type": "age", "id": "GDS2588_3" }, { "dataset_id": "GDS2588", "description": "OD 0.6", "sample_id": [ "GSM99178" ], "type": "age", "id": "GDS2588_4" }, { "dataset_id": "GDS2588", "description": "OD 0.9", "sample_id": [ "GSM99179" ], "type": "age", "id": "GDS2588_5" }, { "dataset_id": "GDS2588", "description": "stationary phase", "sample_id": [ "GSM99180" ], "type": "age", "id": "GDS2588_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2588", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2588.tab", "compression": "gz" } ], [ [ "GDS2589.tab" ], { "title": "Anaerobic growth (II)", "description": "Analysis of MG1655 cells at various phases of growth up to stationary phase. Cells were grown anaerobically in M9 media containing glucose and fumarate. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "mixed", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4374", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2589", "description": "OD 0.05", "sample_id": [ "GSM99181" ], "type": "age", "id": "GDS2589_1" }, { "dataset_id": "GDS2589", "description": "OD 0.21", "sample_id": [ "GSM99182" ], "type": "age", "id": "GDS2589_2" }, { "dataset_id": "GDS2589", "description": "OD 0.43", "sample_id": [ "GSM99183" ], "type": "age", "id": "GDS2589_3" }, { "dataset_id": "GDS2589", "description": "OD 0.7", "sample_id": [ "GSM99184" ], "type": "age", "id": "GDS2589_4" }, { "dataset_id": "GDS2589", "description": "OD 1.2", "sample_id": [ "GSM99185" ], "type": "age", "id": "GDS2589_5" }, { "dataset_id": "GDS2589", "description": "stationary phase", "sample_id": [ "GSM99186" ], "type": "age", "id": "GDS2589_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2589", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2589.tab", "compression": "gz" } ], [ [ "GDS259.tab" ], { "title": "Spinal cord injury and regeneration time course: at T9 (RG-U34B)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord at thoracic vertebrae T9 at various time points up to 28 days post injury. Mild, moderate and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "77", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS259", "description": "control", "sample_id": [ "GSM4485", "GSM4486", "GSM31271", "GSM31262", "GSM4481", "GSM4482", "GSM4479", "GSM4480", "GSM31508", "GSM31259", "GSM31261", "GSM4483", "GSM4484", "GSM31255", "GSM31252" ], "type": "protocol", "id": "GDS259_1" }, { "dataset_id": "GDS259", "description": "mild injury", "sample_id": [ "GSM31228", "GSM31227", "GSM31804", "GSM4471", "GSM4472", "GSM4473", "GSM4474", "GSM4466", "GSM4468", "GSM4469", "GSM4470", "GSM4475", "GSM4476", "GSM4478", "GSM31200" ], "type": "protocol", "id": "GDS259_2" }, { "dataset_id": "GDS259", "description": "moderate injury", "sample_id": [ "GSM31195", "GSM31565", "GSM31570", "GSM31571", "GSM31514", "GSM31517", "GSM31516", "GSM31523", "GSM31193", "GSM31531", "GSM31530", "GSM31535", "GSM31555", "GSM31552", "GSM31553", "GSM31560", "GSM31576", "GSM31573", "GSM31579", "GSM31583", "GSM31588", "GSM31581", "GSM31591", "GSM31592", "GSM31529", "GSM31543", "GSM31544", "GSM31540", "GSM31549" ], "type": "protocol", "id": "GDS259_3" }, { "dataset_id": "GDS259", "description": "severe injury", "sample_id": [ "GSM7579", "GSM7582", "GSM7585", "GSM7588", "GSM7567", "GSM7570", "GSM7573", "GSM7576", "GSM7591", "GSM7594", "GSM7597", "GSM7600", "GSM31596", "GSM31615", "GSM31612", "GSM31608", "GSM31605", "GSM31607" ], "type": "protocol", "id": "GDS259_4" }, { "dataset_id": "GDS259", "description": "0 h", "sample_id": [ "GSM4485", "GSM4486" ], "type": "time", "id": "GDS259_5" }, { "dataset_id": "GDS259", "description": "0.5 h", "sample_id": [ "GSM31271", "GSM31262", "GSM31228", "GSM31227", "GSM31804" ], "type": "time", "id": "GDS259_6" }, { "dataset_id": "GDS259", "description": "4 h", "sample_id": [ "GSM4481", "GSM4482", "GSM4471", "GSM4472", "GSM4473", "GSM4474", "GSM31195", "GSM31565", "GSM31570", "GSM31571", "GSM7579", "GSM7582", "GSM7585", "GSM7588" ], "type": "time", "id": "GDS259_7" }, { "dataset_id": "GDS259", "description": "0.5 d", "sample_id": [ "GSM31514", "GSM31517", "GSM31516", "GSM31523" ], "type": "time", "id": "GDS259_8" }, { "dataset_id": "GDS259", "description": "1 d", "sample_id": [ "GSM4479", "GSM4480", "GSM4466", "GSM4468", "GSM4469", "GSM4470", "GSM31193", "GSM31531", "GSM31530", "GSM31535", "GSM7567", "GSM7570", "GSM7573", "GSM7576" ], "type": "time", "id": "GDS259_9" }, { "dataset_id": "GDS259", "description": "2 d", "sample_id": [ "GSM31259", "GSM31261", "GSM31555", "GSM31552", "GSM31553", "GSM31560" ], "type": "time", "id": "GDS259_10" }, { "dataset_id": "GDS259", "description": "3 d", "sample_id": [ "GSM31508", "GSM31576", "GSM31573", "GSM31579", "GSM31583" ], "type": "time", "id": "GDS259_11" }, { "dataset_id": "GDS259", "description": "7 d", "sample_id": [ "GSM4483", "GSM4484", "GSM4475", "GSM4476", "GSM4478", "GSM31588", "GSM31581", "GSM31591", "GSM31592", "GSM7591", "GSM7594", "GSM7597", "GSM7600" ], "type": "time", "id": "GDS259_12" }, { "dataset_id": "GDS259", "description": "14 d", "sample_id": [ "GSM31255", "GSM31252", "GSM31200", "GSM31596", "GSM31615", "GSM31612" ], "type": "time", "id": "GDS259_13" }, { "dataset_id": "GDS259", "description": "21 d", "sample_id": [ "GSM31529" ], "type": "time", "id": "GDS259_14" }, { "dataset_id": "GDS259", "description": "28 d", "sample_id": [ "GSM31543", "GSM31544", "GSM31540", "GSM31549", "GSM31608", "GSM31605", "GSM31607" ], "type": "time", "id": "GDS259_15" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS259", "version": 1.0, "instances": "77", "variables": 7621, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS259.tab", "compression": "gz" } ], [ [ "GDS2590.tab" ], { "title": "Anaerobic growth (III)", "description": "Analysis of MG1655 cells grown up to an OD of 1.27. Cells were grown anaerobically in M9 media containing glucose. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4375", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2590", "description": "OD 0.08", "sample_id": [ "GSM99187" ], "type": "age", "id": "GDS2590_1" }, { "dataset_id": "GDS2590", "description": "OD 0.15", "sample_id": [ "GSM99188" ], "type": "age", "id": "GDS2590_2" }, { "dataset_id": "GDS2590", "description": "OD 0.34", "sample_id": [ "GSM99189" ], "type": "age", "id": "GDS2590_3" }, { "dataset_id": "GDS2590", "description": "OD 0.73", "sample_id": [ "GSM99190" ], "type": "age", "id": "GDS2590_4" }, { "dataset_id": "GDS2590", "description": "OD 1.02", "sample_id": [ "GSM99191" ], "type": "age", "id": "GDS2590_5" }, { "dataset_id": "GDS2590", "description": "OD 1.27", "sample_id": [ "GSM99192" ], "type": "age", "id": "GDS2590_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2590", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2590.tab", "compression": "gz" } ], [ [ "GDS2591.tab" ], { "title": "Anaerobic growth (IV)", "description": "Analysis of MG1655 cells grown up to an OD of 1.29. Cells were grown anaerobically in M9 media containing glucose and fumarate. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4376", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2591", "description": "OD 0.15", "sample_id": [ "GSM99193" ], "type": "age", "id": "GDS2591_1" }, { "dataset_id": "GDS2591", "description": "OD 0.30", "sample_id": [ "GSM99194" ], "type": "age", "id": "GDS2591_2" }, { "dataset_id": "GDS2591", "description": "OD 0.63", "sample_id": [ "GSM99195" ], "type": "age", "id": "GDS2591_3" }, { "dataset_id": "GDS2591", "description": "OD 0.85", "sample_id": [ "GSM99196" ], "type": "age", "id": "GDS2591_4" }, { "dataset_id": "GDS2591", "description": "OD 1.07", "sample_id": [ "GSM99197" ], "type": "age", "id": "GDS2591_5" }, { "dataset_id": "GDS2591", "description": "OD 1.29", "sample_id": [ "GSM99198" ], "type": "age", "id": "GDS2591_6" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2591", "version": 1.0, "instances": "6", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2591.tab", "compression": "gz" } ], [ [ "GDS2592.tab" ], { "title": "NOX overexpressing cells at various growth rates", "description": "Analysis of NOX overexpressing MG1655 cells at various growth rates during balanced growth in chemostat cultures. Cells with NOX recycle the excess NADH generated during rapid growth. OD600 of 0.13 to 0.4 examined. Part of a study tracking responses to chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4365", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2592", "description": "OD600 0.13", "sample_id": [ "GSM99132" ], "type": "growth protocol", "id": "GDS2592_1" }, { "dataset_id": "GDS2592", "description": "OD600 0.21", "sample_id": [ "GSM99133" ], "type": "growth protocol", "id": "GDS2592_2" }, { "dataset_id": "GDS2592", "description": "OD600 0.28", "sample_id": [ "GSM99134" ], "type": "growth protocol", "id": "GDS2592_3" }, { "dataset_id": "GDS2592", "description": "OD600 0.34", "sample_id": [ "GSM99135" ], "type": "growth protocol", "id": "GDS2592_4" }, { "dataset_id": "GDS2592", "description": "OD600 0.4", "sample_id": [ "GSM99136" ], "type": "growth protocol", "id": "GDS2592_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2592", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2592.tab", "compression": "gz" } ], [ [ "GDS2593.tab" ], { "title": "Wild type cells at various growth rates", "description": "Analysis of cells at various growth rates during balanced growth in chemostat. Results compared to those from cells overexpressing NOX. NOX allows cells to recycle the excess NADH during rapid growth. OD600 of 0.19 to 0.6 examined. Part of a study tracking responses to various perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4366", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2593", "description": "OD600 0.19", "sample_id": [ "GSM99137" ], "type": "growth protocol", "id": "GDS2593_1" }, { "dataset_id": "GDS2593", "description": "OD600 0.3", "sample_id": [ "GSM99138" ], "type": "growth protocol", "id": "GDS2593_2" }, { "dataset_id": "GDS2593", "description": "OD600 0.41", "sample_id": [ "GSM99139" ], "type": "growth protocol", "id": "GDS2593_3" }, { "dataset_id": "GDS2593", "description": "OD600 0.49", "sample_id": [ "GSM99140" ], "type": "growth protocol", "id": "GDS2593_4" }, { "dataset_id": "GDS2593", "description": "OD600 0.6", "sample_id": [ "GSM99141" ], "type": "growth protocol", "id": "GDS2593_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2593", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2593.tab", "compression": "gz" } ], [ [ "GDS2594.tab" ], { "title": "Norfloxacin treatment: time course", "description": "Analysis of C600 cells at various time points up to 30 minutes following treatment with 50 ug/ml norfloxacin. Norfloxacin added to cells grown in LB. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4367", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2594", "description": "2 min", "sample_id": [ "GSM99142" ], "type": "time", "id": "GDS2594_1" }, { "dataset_id": "GDS2594", "description": "5 min", "sample_id": [ "GSM99143" ], "type": "time", "id": "GDS2594_2" }, { "dataset_id": "GDS2594", "description": "10 min", "sample_id": [ "GSM99144" ], "type": "time", "id": "GDS2594_3" }, { "dataset_id": "GDS2594", "description": "20 min", "sample_id": [ "GSM99145" ], "type": "time", "id": "GDS2594_4" }, { "dataset_id": "GDS2594", "description": "30 min", "sample_id": [ "GSM99146" ], "type": "time", "id": "GDS2594_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2594", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2594.tab", "compression": "gz" } ], [ [ "GDS2595.tab" ], { "title": "gyrA parC double mutant response to norfloxacin treatment: time course (I)", "description": "Analysis of C600 gyrA parC double mutants at various time points up to 30 minutes following treatment with 15 ug/ml norfloxacin. gyrA parC double mutants are resistant to norfloxacin. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4368", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2595", "description": "2 min", "sample_id": [ "GSM99147" ], "type": "time", "id": "GDS2595_1" }, { "dataset_id": "GDS2595", "description": "5 min", "sample_id": [ "GSM99148" ], "type": "time", "id": "GDS2595_2" }, { "dataset_id": "GDS2595", "description": "10 min", "sample_id": [ "GSM99149" ], "type": "time", "id": "GDS2595_3" }, { "dataset_id": "GDS2595", "description": "20 min", "sample_id": [ "GSM99150" ], "type": "time", "id": "GDS2595_4" }, { "dataset_id": "GDS2595", "description": "30 min", "sample_id": [ "GSM99151" ], "type": "time", "id": "GDS2595_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2595", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2595.tab", "compression": "gz" } ], [ [ "GDS2596.tab" ], { "title": "gyrA parC double mutant response to norfloxacin treatment: time course (II)", "description": "Analysis of C600 gyrA parC double mutants at various time points up to 30 minutes following treatment with 50 ug/ml norfloxacin. gyrA parC double mutants are resistant to norfloxacin. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4369", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2596", "description": "2 min", "sample_id": [ "GSM99152" ], "type": "time", "id": "GDS2596_1" }, { "dataset_id": "GDS2596", "description": "5 min", "sample_id": [ "GSM99153" ], "type": "time", "id": "GDS2596_2" }, { "dataset_id": "GDS2596", "description": "10 min", "sample_id": [ "GSM99154" ], "type": "time", "id": "GDS2596_3" }, { "dataset_id": "GDS2596", "description": "20 min", "sample_id": [ "GSM99155" ], "type": "time", "id": "GDS2596_4" }, { "dataset_id": "GDS2596", "description": "30 min", "sample_id": [ "GSM99156" ], "type": "time", "id": "GDS2596_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2596", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2596.tab", "compression": "gz" } ], [ [ "GDS2597.tab" ], { "title": "Sodium azide treatment: time course", "description": "Analysis of W3110 cells in Bonner-Vogel medium supplemented with 50 ug/ml tryptophan at various time points up to 60 minutes following treatment with 0.01 M sodium azide. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4372", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2597", "description": "5 min", "sample_id": [ "GSM99171" ], "type": "time", "id": "GDS2597_1" }, { "dataset_id": "GDS2597", "description": "15 min", "sample_id": [ "GSM99172" ], "type": "time", "id": "GDS2597_2" }, { "dataset_id": "GDS2597", "description": "30 min", "sample_id": [ "GSM99173" ], "type": "time", "id": "GDS2597_3" }, { "dataset_id": "GDS2597", "description": "60 min", "sample_id": [ "GSM99174" ], "type": "time", "id": "GDS2597_4" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2597", "version": 1.0, "instances": "4", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2597.tab", "compression": "gz" } ], [ [ "GDS2598.tab" ], { "title": "Gamma radiation treatment: time course", "description": "Analysis of MG1655 cells in Davis medium at various time points up to 60 minutes following treatment with gamma radiation. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log2 ratio", "reference_series": "GSE4377", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2598", "description": "5 min", "sample_id": [ "GSM99199" ], "type": "time", "id": "GDS2598_1" }, { "dataset_id": "GDS2598", "description": "10 min", "sample_id": [ "GSM99200" ], "type": "time", "id": "GDS2598_2" }, { "dataset_id": "GDS2598", "description": "20 min", "sample_id": [ "GSM99201" ], "type": "time", "id": "GDS2598_3" }, { "dataset_id": "GDS2598", "description": "40 min", "sample_id": [ "GSM99202" ], "type": "time", "id": "GDS2598_4" }, { "dataset_id": "GDS2598", "description": "60 min", "sample_id": [ "GSM99203" ], "type": "time", "id": "GDS2598_5" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2598", "version": 1.0, "instances": "5", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2598.tab", "compression": "gz" } ], [ [ "GDS2599.tab" ], { "title": "Novobiocin treatment: dose response", "description": "Analysis of LE234 acrD- cells treated with novobiocin at various concentrations up to 200 ug/ml for 5 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4378", "order": "ordered", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2599", "description": "5 ug/ml", "sample_id": [ "GSM99204" ], "type": "dose", "id": "GDS2599_1" }, { "dataset_id": "GDS2599", "description": "20 ug/ml", "sample_id": [ "GSM99205" ], "type": "dose", "id": "GDS2599_2" }, { "dataset_id": "GDS2599", "description": "50 ug/ml", "sample_id": [ "GSM99206" ], "type": "dose", "id": "GDS2599_3" }, { "dataset_id": "GDS2599", "description": "200 ug/ml", "sample_id": [ "GSM99207" ], "type": "dose", "id": "GDS2599_4" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2599", "version": 1.0, "instances": "4", "variables": 4364, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2599.tab", "compression": "gz" } ], [ [ "GDS26.tab" ], { "title": "Ume6 regulon (Ye6100subA)", "description": "Examination of wild type and ume6-deleted diploids during vegetative growth in glucose and acetate in order to expand the profile of ume6-regulated genes.", "type": "Expression profiling by array", "pubmed_id": "12370439", "platform": "GPL163", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1651", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE52", "order": "none", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS26", "description": "YPA", "sample_id": [ "GSM1680", "GSM1763", "GSM1761", "GSM1765" ], "type": "growth protocol", "id": "GDS26_1" }, { "dataset_id": "GDS26", "description": "YPD", "sample_id": [ "GSM1760", "GSM1764", "GSM1762", "GSM1766" ], "type": "growth protocol", "id": "GDS26_2" }, { "dataset_id": "GDS26", "description": "SK1 ume6 diploid", "sample_id": [ "GSM1680", "GSM1760" ], "type": "strain", "id": "GDS26_3" }, { "dataset_id": "GDS26", "description": "SK1 wildtype", "sample_id": [ "GSM1761", "GSM1762" ], "type": "strain", "id": "GDS26_4" }, { "dataset_id": "GDS26", "description": "W303 ume6 diploid", "sample_id": [ "GSM1763", "GSM1764" ], "type": "strain", "id": "GDS26_5" }, { "dataset_id": "GDS26", "description": "W303 wildtype", "sample_id": [ "GSM1765", "GSM1766" ], "type": "strain", "id": "GDS26_6" } ], "taxid": "4932", "genes": 1538, "aggregation_function": "mean", "name": "GDS26", "version": 1.0, "instances": "8", "variables": 1541, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS26.tab", "compression": "gz" } ], [ [ "GDS2600.tab" ], { "title": "Stationary phase: time course", "description": "Analysis of stationary phase MG1655 cells at OD600 of 2.4, 2.8, and 3.1. Cells at OD 3.1 in LB media examined at various time points up to 60 minutes. This is part of a study tracking transcriptional responses to over 30 chemical and physiological perturbations.", "type": "Expression profiling by array", "pubmed_id": "16626502", "platform": "GPL3503", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4405", "sample_organism": "Escherichia coli", "sample_type": "mixed", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4380", "order": "none", "update_date": "Mar 28 2007", "subsets": [ { "dataset_id": "GDS2600", "description": "OD600 2.4", "sample_id": [ "GSM99211" ], "type": "protocol", "id": "GDS2600_1" }, { "dataset_id": "GDS2600", "description": "OD600 2.8", "sample_id": [ "GSM99212" ], "type": "protocol", "id": "GDS2600_2" }, { "dataset_id": "GDS2600", "description": "OD600 3.1", "sample_id": [ "GSM99213", "GSM99214", "GSM99215", "GSM99216" ], "type": "protocol", "id": "GDS2600_3" }, { "dataset_id": "GDS2600", "description": "0 min", "sample_id": [ "GSM99211", "GSM99212", "GSM99213" ], "type": "time", "id": "GDS2600_4" }, { "dataset_id": "GDS2600", "description": "20 min", "sample_id": [ "GSM99214" ], "type": "time", "id": "GDS2600_5" }, { "dataset_id": "GDS2600", "description": "40 min", "sample_id": [ "GSM99215" ], "type": "time", "id": "GDS2600_6" }, { "dataset_id": "GDS2600", "description": "60 min", "sample_id": [ "GSM99216" ], "type": "time", "id": "GDS2600_7" } ], "taxid": "562", "genes": 4362, "aggregation_function": "mean", "name": "GDS2600", "version": 1.0, "instances": "6", "variables": 4365, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2600.tab", "compression": "gz" } ], [ [ "GDS2601.tab" ], { "title": "Alzheimer blood mononuclear cells", "description": "Analysis of blood mononuclear cells of sporadic Alzheimer disease (AD) and age- gender-matched normal controls. Results reveal insights into systemic nature of gene dys-regulation in sporadic AD and suggest novel pathways of beta-amyloid deposition.", "type": "Expression profiling by array", "pubmed_id": [ "16979800", "19366883" ], "platform": "GPL1211", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9600", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE4226", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2601", "description": "Alzheimer disease", "sample_id": [ "GSM96462", "GSM96463", "GSM96464", "GSM96466", "GSM96467", "GSM96468", "GSM96469", "GSM96477", "GSM96478", "GSM96479", "GSM96480", "GSM96481", "GSM96482", "GSM96483" ], "type": "disease state", "id": "GDS2601_1" }, { "dataset_id": "GDS2601", "description": "normal", "sample_id": [ "GSM96454", "GSM96455", "GSM96456", "GSM96457", "GSM96458", "GSM96459", "GSM96461", "GSM96470", "GSM96471", "GSM96472", "GSM96473", "GSM96474", "GSM96475", "GSM96476" ], "type": "disease state", "id": "GDS2601_2" }, { "dataset_id": "GDS2601", "description": "male", "sample_id": [ "GSM96470", "GSM96471", "GSM96472", "GSM96473", "GSM96474", "GSM96475", "GSM96476", "GSM96477", "GSM96478", "GSM96479", "GSM96480", "GSM96481", "GSM96482", "GSM96483" ], "type": "gender", "id": "GDS2601_3" }, { "dataset_id": "GDS2601", "description": "female", "sample_id": [ "GSM96454", "GSM96455", "GSM96456", "GSM96457", "GSM96458", "GSM96459", "GSM96461", "GSM96462", "GSM96463", "GSM96464", "GSM96466", "GSM96467", "GSM96468", "GSM96469" ], "type": "gender", "id": "GDS2601_4" } ], "taxid": "9606", "genes": 6860, "aggregation_function": "mean", "name": "GDS2601", "version": 1.0, "instances": "28", "variables": 6863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2601.tab", "compression": "gz" } ], [ [ "GDS2602.tab" ], { "title": "COX-1 or COX-2 knockout effect in brain", "description": "Analysis of cortex and hippocampus in cyclooxygenase (COX)-1 and COX-2 knockouts. COX-1 and COX-2 produce prostanoids from arachidonic acid. Results indicate COX-1 and COX-2 differentially modulate brain gene expression, and give insight into therapeutic and toxicologic effects of COX inhibition.", "type": "Expression profiling by array", "pubmed_id": "17266762", "platform": "GPL4006", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16896", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "Z-score", "reference_series": "GSE5342", "order": "none", "update_date": "Apr 03 2007", "subsets": [ { "dataset_id": "GDS2602", "description": "cerebral cortex", "sample_id": [ "GSM121421", "GSM121422", "GSM121423", "GSM121424", "GSM121425", "GSM121426", "GSM121427", "GSM121428", "GSM121429", "GSM121430", "GSM121431", "GSM121432", "GSM121433", "GSM121434", "GSM121435" ], "type": "tissue", "id": "GDS2602_1" }, { "dataset_id": "GDS2602", "description": "hippocampus", "sample_id": [ "GSM121436", "GSM121437", "GSM121438", "GSM121439", "GSM121440", "GSM121441", "GSM121442", "GSM121443", "GSM121444", "GSM121445", "GSM121446", "GSM121447", "GSM121448", "GSM121449", "GSM121450" ], "type": "tissue", "id": "GDS2602_2" }, { "dataset_id": "GDS2602", "description": "cox-1 wild type", "sample_id": [ "GSM121421", "GSM121422", "GSM121423", "GSM121436", "GSM121437", "GSM121438" ], "type": "strain", "id": "GDS2602_3" }, { "dataset_id": "GDS2602", "description": "cox-1 knockout", "sample_id": [ "GSM121424", "GSM121425", "GSM121426", "GSM121439", "GSM121440", "GSM121441" ], "type": "strain", "id": "GDS2602_4" }, { "dataset_id": "GDS2602", "description": "cox-2 wild type", "sample_id": [ "GSM121427", "GSM121428", "GSM121429", "GSM121442", "GSM121443", "GSM121444" ], "type": "strain", "id": "GDS2602_5" }, { "dataset_id": "GDS2602", "description": "cox-2 knockout", "sample_id": [ "GSM121430", "GSM121431", "GSM121432", "GSM121445", "GSM121446", "GSM121447" ], "type": "strain", "id": "GDS2602_6" }, { "dataset_id": "GDS2602", "description": "cox-2 heterozygous", "sample_id": [ "GSM121433", "GSM121434", "GSM121435", "GSM121448", "GSM121449", "GSM121450" ], "type": "strain", "id": "GDS2602_7" } ], "taxid": "10090", "genes": 14141, "aggregation_function": "mean", "name": "GDS2602", "version": 1.0, "instances": "30", "variables": 14144, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2602.tab", "compression": "gz" } ], [ [ "GDS2603.tab" ], { "title": "Arsenite and p53 effect on G2 synchronized fibroblasts", "description": "Analysis of p53-expressing or p53-deficient fibroblasts exposed to arsenite (As) after release from G2 phase synchrony. p53 is activated in response to mitotic disruption by arsenic. Results provide insight into the role of p53 in the As-induced disruption of G2/M phase progression.", "type": "Expression profiling by array", "pubmed_id": "16966095", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE7101", "order": "none", "update_date": "Apr 13 2007", "subsets": [ { "dataset_id": "GDS2603", "description": "p53-deficient", "sample_id": [ "GSM169493", "GSM169494", "GSM169900", "GSM170247", "GSM170599", "GSM170714", "GSM170812", "GSM170828" ], "type": "protocol", "id": "GDS2603_1" }, { "dataset_id": "GDS2603", "description": "p53-expressing", "sample_id": [ "GSM169468", "GSM169469", "GSM169470", "GSM169478", "GSM170255", "GSM170256", "GSM170257", "GSM170598" ], "type": "protocol", "id": "GDS2603_2" }, { "dataset_id": "GDS2603", "description": "control", "sample_id": [ "GSM169468", "GSM169469", "GSM169470", "GSM169478", "GSM169493", "GSM169494", "GSM169900", "GSM170247" ], "type": "agent", "id": "GDS2603_3" }, { "dataset_id": "GDS2603", "description": "arsenite", "sample_id": [ "GSM170255", "GSM170256", "GSM170257", "GSM170598", "GSM170599", "GSM170714", "GSM170812", "GSM170828" ], "type": "agent", "id": "GDS2603_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2603", "version": 1.0, "instances": "16", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2603.tab", "compression": "gz" } ], [ [ "GDS2604.tab" ], { "title": "Asbestos effect on epithelial and mesothelial lung cell lines: time course", "description": "Analysis of epithelial and mesothelial lung cell lines at various time points up to 7 days after exposure to asbestos. Asbestos exposure causes lung diseases such as asbestosis, malignant mesothelioma, and lung cancer. Results provide insight into the pathogenesis of asbestos-associated diseases.", "type": "Expression profiling by array", "pubmed_id": "17331233", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE6013", "order": "none", "update_date": "Apr 13 2007", "subsets": [ { "dataset_id": "GDS2604", "description": "0 h", "sample_id": [ "GSM139646", "GSM139660" ], "type": "time", "id": "GDS2604_1" }, { "dataset_id": "GDS2604", "description": "1 h", "sample_id": [ "GSM139640", "GSM139647", "GSM139654", "GSM139661", "GSM139669", "GSM139760" ], "type": "time", "id": "GDS2604_2" }, { "dataset_id": "GDS2604", "description": "6 h", "sample_id": [ "GSM139641", "GSM139648", "GSM139655", "GSM139663" ], "type": "time", "id": "GDS2604_3" }, { "dataset_id": "GDS2604", "description": "24 h", "sample_id": [ "GSM139643", "GSM139653", "GSM139656", "GSM139657", "GSM139664" ], "type": "time", "id": "GDS2604_4" }, { "dataset_id": "GDS2604", "description": "48 h", "sample_id": [ "GSM139644", "GSM139645", "GSM139652", "GSM139659", "GSM139666", "GSM139667", "GSM139668", "GSM139761" ], "type": "time", "id": "GDS2604_5" }, { "dataset_id": "GDS2604", "description": "7 days", "sample_id": [ "GSM139642", "GSM139649" ], "type": "time", "id": "GDS2604_6" }, { "dataset_id": "GDS2604", "description": "A549", "sample_id": [ "GSM139640", "GSM139641", "GSM139642", "GSM139643", "GSM139644", "GSM139645", "GSM139646", "GSM139647", "GSM139648", "GSM139649", "GSM139652", "GSM139653" ], "type": "cell line", "id": "GDS2604_7" }, { "dataset_id": "GDS2604", "description": "Beas2B", "sample_id": [ "GSM139654", "GSM139655", "GSM139656", "GSM139657", "GSM139659", "GSM139660", "GSM139661", "GSM139663", "GSM139664", "GSM139666" ], "type": "cell line", "id": "GDS2604_8" }, { "dataset_id": "GDS2604", "description": "Met5A", "sample_id": [ "GSM139667", "GSM139668", "GSM139669", "GSM139760", "GSM139761" ], "type": "cell line", "id": "GDS2604_9" }, { "dataset_id": "GDS2604", "description": "asbestos", "sample_id": [ "GSM139640", "GSM139641", "GSM139642", "GSM139643", "GSM139644", "GSM139645", "GSM139654", "GSM139655", "GSM139656", "GSM139657", "GSM139659", "GSM139667", "GSM139668", "GSM139760" ], "type": "agent", "id": "GDS2604_10" }, { "dataset_id": "GDS2604", "description": "control", "sample_id": [ "GSM139646", "GSM139647", "GSM139648", "GSM139649", "GSM139652", "GSM139653", "GSM139660", "GSM139661", "GSM139663", "GSM139664", "GSM139666", "GSM139669", "GSM139761" ], "type": "agent", "id": "GDS2604_11" }, { "dataset_id": "GDS2604", "description": "epithelial", "sample_id": [ "GSM139640", "GSM139641", "GSM139642", "GSM139643", "GSM139644", "GSM139645", "GSM139646", "GSM139647", "GSM139648", "GSM139649", "GSM139652", "GSM139653", "GSM139654", "GSM139655", "GSM139656", "GSM139657", "GSM139659", "GSM139660", "GSM139661", "GSM139663", "GSM139664", "GSM139666" ], "type": "cell type", "id": "GDS2604_12" }, { "dataset_id": "GDS2604", "description": "mesothelial", "sample_id": [ "GSM139667", "GSM139668", "GSM139669", "GSM139760", "GSM139761" ], "type": "cell type", "id": "GDS2604_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2604", "version": 1.0, "instances": "27", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2604.tab", "compression": "gz" } ], [ [ "GDS2605.tab" ], { "title": "Niacin-bound chromium effect on the subcutaneous fat tissue of a model for type 2 diabetes with obesity", "description": "Analysis of subcutaneous fat tissues of type 2 Lepr(db/db) animals supplemented with niacin-bound chromium (NBC) for 10 weeks. The Lepr(db/db) animal is a model for type 2 diabetes with obesity. Results provide insight into the basis of the beneficial effect of NBC on diabetes and obesity.", "type": "Expression profiling by array", "pubmed_id": "16940432", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4420", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2605", "description": "water", "sample_id": [ "GSM99687", "GSM99688", "GSM99689", "GSM99690" ], "type": "agent", "id": "GDS2605_1" }, { "dataset_id": "GDS2605", "description": "niacin-bound chromium", "sample_id": [ "GSM99691", "GSM99692", "GSM99693", "GSM99694" ], "type": "agent", "id": "GDS2605_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2605", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2605.tab", "compression": "gz" } ], [ [ "GDS2606.tab" ], { "title": "Bronchial epithelial cell line response to various airway pathogens", "description": "Analysis of bronchial epithelial BEAS-2B cells exposed to UV-inactivated Staphylococcus aureus, Pseudomonas aeruginosa, or respiratory syncytial virus. Results provide insight into the common and specific molecular responses of bronchial epithelial cells to various airway pathogens.", "type": "Expression profiling by array", "pubmed_id": "17312161", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE6802", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2606", "description": "control", "sample_id": [ "GSM157034", "GSM157035", "GSM157036" ], "type": "agent", "id": "GDS2606_1" }, { "dataset_id": "GDS2606", "description": "Pseudomonas aeruginosa", "sample_id": [ "GSM157037", "GSM157038", "GSM157039" ], "type": "agent", "id": "GDS2606_2" }, { "dataset_id": "GDS2606", "description": "respiratory syncytial virus", "sample_id": [ "GSM157040", "GSM157041", "GSM157042" ], "type": "agent", "id": "GDS2606_3" }, { "dataset_id": "GDS2606", "description": "Staphylococcus aureus", "sample_id": [ "GSM157043", "GSM157044" ], "type": "agent", "id": "GDS2606_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2606", "version": 1.0, "instances": "11", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2606.tab", "compression": "gz" } ], [ [ "GDS2607.tab" ], { "title": "Polyunsaturated fatty acids effect on cardiomyocytes", "description": "Analysis of primary cardiomyocyte cultures treated with eicosapentaenoic acid (EPA) or docosahexaenoic acid (DHA). EPA and DHA are n-3 polyunsaturated fatty acids (PUFAs). Results provide insight into the molecular basis of the cardioprotective effect of n-3 PUFAs.", "type": "Expression profiling by array", "pubmed_id": "17303130", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE4327", "order": "none", "update_date": "Apr 18 2007", "subsets": [ { "dataset_id": "GDS2607", "description": "eicosapentaenoic acid", "sample_id": [ "GSM98747", "GSM98757" ], "type": "agent", "id": "GDS2607_1" }, { "dataset_id": "GDS2607", "description": "docosahexaenoic acid", "sample_id": [ "GSM98755", "GSM98756" ], "type": "agent", "id": "GDS2607_2" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2607", "version": 1.0, "instances": "4", "variables": 17252, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2607.tab", "compression": "gz" } ], [ [ "GDS2608.tab" ], { "title": "Antipsychotic agent olanzapine effect on the brain frontal cortex", "description": "Analysis of brain frontal cortices of albino Sprague-Dawley males treated with olanzapine for 21 days. Olanzapine is a second generation antipsychotic agent. Results provide insight into the molecular basis of the clinical response to olanzapine.", "type": "Expression profiling by array", "pubmed_id": "16407901", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2547", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2608", "description": "control", "sample_id": [ "GSM48559", "GSM48577", "GSM48578", "GSM48579" ], "type": "agent", "id": "GDS2608_1" }, { "dataset_id": "GDS2608", "description": "olanzapine", "sample_id": [ "GSM48580", "GSM48581", "GSM48582", "GSM48583" ], "type": "agent", "id": "GDS2608_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2608", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2608.tab", "compression": "gz" } ], [ [ "GDS2609.tab" ], { "title": "Early onset colorectal cancer: normal-appearing colonic mucosa", "description": "Analysis of normal-appearing colonic mucosa of early onset colorectal cancer (CRC) patients without a prior family history of CRC. Results provide insight into the molecular pathogenesis of early onset CRC.", "type": "Expression profiling by array", "pubmed_id": "17317818", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE4107", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2609", "description": "healthy control", "sample_id": [ "GSM93938", "GSM93939", "GSM93941", "GSM93943", "GSM93944", "GSM93946", "GSM93948", "GSM93950", "GSM93952", "GSM93954" ], "type": "disease state", "id": "GDS2609_1" }, { "dataset_id": "GDS2609", "description": "early onset colorectal cancer", "sample_id": [ "GSM93789", "GSM93920", "GSM93921", "GSM93922", "GSM93923", "GSM93924", "GSM93925", "GSM93926", "GSM93927", "GSM93928", "GSM93929", "GSM93932" ], "type": "disease state", "id": "GDS2609_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2609", "version": 1.0, "instances": "22", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2609.tab", "compression": "gz" } ], [ [ "GDS261.tab" ], { "title": "Asthma exacerbatory factors", "description": "Comparison of epithelial cells derived from asthmatic and normal bronchial airways, and examination of factors that enhance inflammatory and immunologic responses which exacerbate asthma. Effects of ozone and rhinovirus examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE470", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS261", "description": "asthma", "sample_id": [ "GSM3909", "GSM3910", "GSM3911", "GSM3912", "GSM3913", "GSM3914" ], "type": "disease state", "id": "GDS261_1" }, { "dataset_id": "GDS261", "description": "normal", "sample_id": [ "GSM3915", "GSM3916", "GSM3917", "GSM3918", "GSM3919", "GSM3920" ], "type": "disease state", "id": "GDS261_2" }, { "dataset_id": "GDS261", "description": "0 h", "sample_id": [ "GSM3918", "GSM3909", "GSM3911", "GSM3913", "GSM3915", "GSM3916" ], "type": "time", "id": "GDS261_3" }, { "dataset_id": "GDS261", "description": "18 h", "sample_id": [ "GSM3910", "GSM3912", "GSM3914", "GSM3917", "GSM3919", "GSM3920" ], "type": "time", "id": "GDS261_4" }, { "dataset_id": "GDS261", "description": "ozone", "sample_id": [ "GSM3911", "GSM3912", "GSM3918", "GSM3919" ], "type": "agent", "id": "GDS261_5" }, { "dataset_id": "GDS261", "description": "rhinovirus", "sample_id": [ "GSM3913", "GSM3914", "GSM3920" ], "type": "agent", "id": "GDS261_6" }, { "dataset_id": "GDS261", "description": "sham rhinovirus", "sample_id": [ "GSM3915" ], "type": "agent", "id": "GDS261_7" }, { "dataset_id": "GDS261", "description": "air", "sample_id": [ "GSM3909", "GSM3910", "GSM3916", "GSM3917" ], "type": "agent", "id": "GDS261_8" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS261", "version": 1.0, "instances": "12", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS261.tab", "compression": "gz" } ], [ [ "GDS2610.tab" ], { "title": "Glycerol kinase deficiency effect on brown adipose tissue", "description": "Analysis of brown adipose tissues from glycerol kinase (GK) knockout mutants. GK is at the interface of fat and carbohydrate metabolism and has been implicated in insulin resistance and type 2 diabetes mellitus. Results provide insight into the role of GK in insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "17406644", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE4656", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2610", "description": "wild-type", "sample_id": [ "GSM104738", "GSM105140", "GSM105141" ], "type": "genotype/variation", "id": "GDS2610_1" }, { "dataset_id": "GDS2610", "description": "glycerol kinase knockout", "sample_id": [ "GSM104736", "GSM104740", "GSM105142", "GSM105144" ], "type": "genotype/variation", "id": "GDS2610_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2610", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2610.tab", "compression": "gz" } ], [ [ "GDS2611.tab" ], { "title": "Interleukin-20 subfamily cytokines effect on epidermal keratinocytes", "description": "Analysis of cultured epidermal keratinocytes treated with various cytokines of the interleukin-20 (IL-20) subfamily. IL-20 cytokines are up-regulated in psoriatic skin. Results provide insight into the role of IL-20 cytokines in the pathogenesis of psoriasis.", "type": "Expression profiling by array", "pubmed_id": "17277128", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE7216", "order": "none", "update_date": "Apr 18 2007", "subsets": [ { "dataset_id": "GDS2611", "description": "untreated", "sample_id": [ "GSM173532", "GSM173533", "GSM173534" ], "type": "agent", "id": "GDS2611_1" }, { "dataset_id": "GDS2611", "description": "keratinocyte growth factor", "sample_id": [ "GSM173550", "GSM173551", "GSM173552" ], "type": "agent", "id": "GDS2611_2" }, { "dataset_id": "GDS2611", "description": "IL-1b", "sample_id": [ "GSM173555", "GSM173556" ], "type": "agent", "id": "GDS2611_3" }, { "dataset_id": "GDS2611", "description": "IFN-gamma", "sample_id": [ "GSM173553", "GSM173554" ], "type": "agent", "id": "GDS2611_4" }, { "dataset_id": "GDS2611", "description": "IL-19", "sample_id": [ "GSM173535", "GSM173536", "GSM173537" ], "type": "agent", "id": "GDS2611_5" }, { "dataset_id": "GDS2611", "description": "IL-20", "sample_id": [ "GSM173538", "GSM173539", "GSM173540" ], "type": "agent", "id": "GDS2611_6" }, { "dataset_id": "GDS2611", "description": "IL-22", "sample_id": [ "GSM173541", "GSM173542", "GSM173543" ], "type": "agent", "id": "GDS2611_7" }, { "dataset_id": "GDS2611", "description": "IL-24", "sample_id": [ "GSM173544", "GSM173545", "GSM173546" ], "type": "agent", "id": "GDS2611_8" }, { "dataset_id": "GDS2611", "description": "IL-26", "sample_id": [ "GSM173547", "GSM173548", "GSM173549" ], "type": "agent", "id": "GDS2611_9" }, { "dataset_id": "GDS2611", "description": "control", "sample_id": [ "GSM173532", "GSM173533", "GSM173534", "GSM173550", "GSM173551", "GSM173552", "GSM173553", "GSM173554", "GSM173555", "GSM173556" ], "type": "other", "id": "GDS2611_10" }, { "dataset_id": "GDS2611", "description": "IL-20 subfamily", "sample_id": [ "GSM173535", "GSM173536", "GSM173537", "GSM173538", "GSM173539", "GSM173540", "GSM173541", "GSM173542", "GSM173543", "GSM173544", "GSM173545", "GSM173546", "GSM173547", "GSM173548", "GSM173549" ], "type": "other", "id": "GDS2611_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2611", "version": 1.0, "instances": "25", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2611.tab", "compression": "gz" } ], [ [ "GDS2612.tab" ], { "title": "Caloric restriction effect on aged skeletal muscle", "description": "Analysis of aged skeletal muscles of C57BL/6NHsd animals fed a calorie-restricted diet. Caloric restriction extends the life of this strain by 40%. Results provide insight into the molecular basis of mammalian aging.", "type": "Expression profiling by array", "pubmed_id": "17381838", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE6323", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2612", "description": "young", "sample_id": [ "GSM146340", "GSM146341", "GSM146342", "GSM146343", "GSM146344" ], "type": "age", "id": "GDS2612_1" }, { "dataset_id": "GDS2612", "description": "old", "sample_id": [ "GSM146345", "GSM146346", "GSM146347", "GSM146348", "GSM146349", "GSM146350", "GSM146351", "GSM146352", "GSM146353", "GSM146354" ], "type": "age", "id": "GDS2612_2" }, { "dataset_id": "GDS2612", "description": "normal diet", "sample_id": [ "GSM146340", "GSM146341", "GSM146342", "GSM146343", "GSM146344", "GSM146345", "GSM146346", "GSM146347", "GSM146348", "GSM146349" ], "type": "protocol", "id": "GDS2612_3" }, { "dataset_id": "GDS2612", "description": "calorie-restricted diet", "sample_id": [ "GSM146350", "GSM146351", "GSM146352", "GSM146353", "GSM146354" ], "type": "protocol", "id": "GDS2612_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2612", "version": 1.0, "instances": "15", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2612.tab", "compression": "gz" } ], [ [ "GDS2613.tab" ], { "title": "Rett syndrome: brain frontal cortex", "description": "Analysis of brain frontal cortices of individuals with Rett syndrome (RTT). RTT is an X-linked neurodevelopmental disorder linked to heterozygous de novo mutations in MECP2, a gene encoding methyl-CpG-binding protein 2. Results provide insight into molecular pathogenesis of RTT.", "type": "Expression profiling by array", "pubmed_id": "17309881", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6955", "order": "none", "update_date": "Apr 10 2007", "subsets": [ { "dataset_id": "GDS2613", "description": "normal", "sample_id": [ "GSM160306", "GSM160308", "GSM160310" ], "type": "disease state", "id": "GDS2613_1" }, { "dataset_id": "GDS2613", "description": "Rett syndrome", "sample_id": [ "GSM160307", "GSM160309", "GSM160311" ], "type": "disease state", "id": "GDS2613_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2613", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2613.tab", "compression": "gz" } ], [ [ "GDS2614.tab" ], { "title": "miRNA-1-2 knockout effect on the heart", "description": "Analysis of hearts from miRNA-1-2 knockout mutants at postnatal day 10. miRNA-1-2 is a microRNA specific for cardiac and skeletal muscle. Results provide insight into the role of miRNA-1-2 in cardiac development.", "type": "Expression profiling by array", "pubmed_id": "17397913", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE7333", "order": "none", "update_date": "Apr 18 2007", "subsets": [ { "dataset_id": "GDS2614", "description": "wild type", "sample_id": [ "GSM176756", "GSM176758", "GSM176759" ], "type": "genotype/variation", "id": "GDS2614_1" }, { "dataset_id": "GDS2614", "description": "miRNA-1-2 knockout", "sample_id": [ "GSM176757", "GSM176760", "GSM176761" ], "type": "genotype/variation", "id": "GDS2614_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2614", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2614.tab", "compression": "gz" } ], [ [ "GDS2615.tab" ], { "title": "Mucociliary differentiation of airway epithelial cells", "description": "Analysis of primary airway epithelial cells cultured at an air-liquid interface for up to 28 days to induce their differentiation into polarized, pseudostratified epithelia of ciliated and mucus-secreting cells. Results provide insight into the mechanisms underlying mucociliary differentiation.", "type": "Expression profiling by array", "pubmed_id": "17413031", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE5264", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2615", "description": "donor 1", "sample_id": [ "GSM119354", "GSM119355", "GSM119356", "GSM119357", "GSM119358", "GSM119359", "GSM119360", "GSM119361" ], "type": "individual", "id": "GDS2615_1" }, { "dataset_id": "GDS2615", "description": "donor 2", "sample_id": [ "GSM119362", "GSM119363", "GSM119364", "GSM119365", "GSM119366", "GSM119367", "GSM119368", "GSM119369", "GSM119370", "GSM119371", "GSM119372" ], "type": "individual", "id": "GDS2615_2" }, { "dataset_id": "GDS2615", "description": "donor 3", "sample_id": [ "GSM119373", "GSM119374", "GSM119375", "GSM119376", "GSM119377", "GSM119378", "GSM119379", "GSM119380", "GSM119381", "GSM119382", "GSM119383" ], "type": "individual", "id": "GDS2615_3" }, { "dataset_id": "GDS2615", "description": "0 d", "sample_id": [ "GSM119354", "GSM119362", "GSM119373" ], "type": "time", "id": "GDS2615_4" }, { "dataset_id": "GDS2615", "description": "1 d", "sample_id": [ "GSM119355", "GSM119363", "GSM119374" ], "type": "time", "id": "GDS2615_5" }, { "dataset_id": "GDS2615", "description": "2 d", "sample_id": [ "GSM119364", "GSM119375" ], "type": "time", "id": "GDS2615_6" }, { "dataset_id": "GDS2615", "description": "4 d", "sample_id": [ "GSM119356", "GSM119365", "GSM119376" ], "type": "time", "id": "GDS2615_7" }, { "dataset_id": "GDS2615", "description": "8 d", "sample_id": [ "GSM119357", "GSM119366", "GSM119377" ], "type": "time", "id": "GDS2615_8" }, { "dataset_id": "GDS2615", "description": "10 d", "sample_id": [ "GSM119358", "GSM119367", "GSM119378" ], "type": "time", "id": "GDS2615_9" }, { "dataset_id": "GDS2615", "description": "12 d", "sample_id": [ "GSM119368", "GSM119379" ], "type": "time", "id": "GDS2615_10" }, { "dataset_id": "GDS2615", "description": "14 d", "sample_id": [ "GSM119359", "GSM119369", "GSM119380" ], "type": "time", "id": "GDS2615_11" }, { "dataset_id": "GDS2615", "description": "17 d", "sample_id": [ "GSM119370", "GSM119381" ], "type": "time", "id": "GDS2615_12" }, { "dataset_id": "GDS2615", "description": "21 d", "sample_id": [ "GSM119360", "GSM119371", "GSM119382" ], "type": "time", "id": "GDS2615_13" }, { "dataset_id": "GDS2615", "description": "28 d", "sample_id": [ "GSM119361", "GSM119372", "GSM119383" ], "type": "time", "id": "GDS2615_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2615", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2615.tab", "compression": "gz" } ], [ [ "GDS2616.tab" ], { "title": "Mammary epithelial cell response to genistein and soy proteins", "description": "Analysis of mammary epithelial cells of females fed a diet containing the soy isoflavone genistein or soy protein isolate. Soy consumption is associated with reduced breast cancer risk in women. Results provide insight into the molecular basis of the beneficial effect of soy-rich diets.", "type": "Expression profiling by array", "pubmed_id": "17341692", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6879", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2616", "description": "control diet", "sample_id": [ "GSM158579", "GSM158580", "GSM158581" ], "type": "protocol", "id": "GDS2616_1" }, { "dataset_id": "GDS2616", "description": "soy protein isolate diet", "sample_id": [ "GSM158582", "GSM158583", "GSM158584", "GSM158585" ], "type": "protocol", "id": "GDS2616_2" }, { "dataset_id": "GDS2616", "description": "genistein diet", "sample_id": [ "GSM158586", "GSM158587", "GSM158588" ], "type": "protocol", "id": "GDS2616_3" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2616", "version": 1.0, "instances": "10", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2616.tab", "compression": "gz" } ], [ [ "GDS2617.tab" ], { "title": "Tumorigenic breast cancer cells (HG-U133A)", "description": "Analysis of breast cancer cells that have high tumorigenic capacity. These cells express CD44 and low or undetectable levels of CD24. Results used to define a gene expression signature associated with metastasis.", "type": "Expression profiling by array", "pubmed_id": "17229949", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6883", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2617", "description": "normal", "sample_id": [ "GSM158644", "GSM158645", "GSM158646" ], "type": "disease state", "id": "GDS2617_1" }, { "dataset_id": "GDS2617", "description": "non-tumorigenic cancer cell", "sample_id": [ "GSM158636", "GSM158638", "GSM158640" ], "type": "disease state", "id": "GDS2617_2" }, { "dataset_id": "GDS2617", "description": "tumorigenic cancer cell", "sample_id": [ "GSM158635", "GSM158637", "GSM158639", "GSM158641", "GSM158642", "GSM158643" ], "type": "disease state", "id": "GDS2617_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2617", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2617.tab", "compression": "gz" } ], [ [ "GDS2618.tab" ], { "title": "Tumorigenic breast cancer cells (HG-U133B)", "description": "Analysis of breast cancer cells that have high tumorigenic capacity. These cells express CD44 and low or undetectable levels of CD24. Results used to define a gene expression signature associated with metastasis.", "type": "Expression profiling by array", "pubmed_id": "17229949", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6883", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2618", "description": "normal", "sample_id": [ "GSM158656", "GSM158657", "GSM158658" ], "type": "disease state", "id": "GDS2618_1" }, { "dataset_id": "GDS2618", "description": "non-tumorigenic cancer cell", "sample_id": [ "GSM158648", "GSM158650", "GSM158652" ], "type": "disease state", "id": "GDS2618_2" }, { "dataset_id": "GDS2618", "description": "tumorigenic cancer cell", "sample_id": [ "GSM158647", "GSM158649", "GSM158651", "GSM158653", "GSM158654", "GSM158655" ], "type": "disease state", "id": "GDS2618_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2618", "version": 1.0, "instances": "12", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2618.tab", "compression": "gz" } ], [ [ "GDS2619.tab" ], { "title": "Chromosome 4-specific protein Painting of fourth D119 mutant", "description": "Analysis of first instar larvae containing a chromosome 4 specific protein POF D119 mutation. POF is an autosome-specific protein that regulates gene expression in chromosome 4 in its entirety. Results provide insight into the molecular mechanisms that regulate chromosome 4 specific gene expression.", "type": "Expression profiling by array", "pubmed_id": "17318176", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE6839", "order": "none", "update_date": "Apr 20 2007", "subsets": [ { "dataset_id": "GDS2619", "description": "wild type", "sample_id": [ "GSM157732", "GSM157734", "GSM157735" ], "type": "genotype/variation", "id": "GDS2619_1" }, { "dataset_id": "GDS2619", "description": "POF mutant", "sample_id": [ "GSM157736", "GSM157737", "GSM157738" ], "type": "genotype/variation", "id": "GDS2619_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2619", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2619.tab", "compression": "gz" } ], [ [ "GDS262.tab" ], { "title": "Duchenne muscular dystrophy (HG-U95A)", "description": "Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.", "type": "Expression profiling by array", "pubmed_id": "11121445", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE465", "order": "none", "update_date": "Mar 16 2010", "subsets": [ { "dataset_id": "GDS262", "description": "normal", "sample_id": [ "GSM48533", "GSM48534", "GSM48535", "GSM48536" ], "type": "disease state", "id": "GDS262_1" }, { "dataset_id": "GDS262", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM4382", "GSM4384", "GSM4401" ], "type": "disease state", "id": "GDS262_2" }, { "dataset_id": "GDS262", "description": "4 to 13 year mix", "sample_id": [ "GSM48534", "GSM48536" ], "type": "age", "id": "GDS262_3" }, { "dataset_id": "GDS262", "description": "5 to 12 year mix", "sample_id": [ "GSM48533", "GSM48535" ], "type": "age", "id": "GDS262_4" }, { "dataset_id": "GDS262", "description": "5 to 6 year mix", "sample_id": [ "GSM4401" ], "type": "age", "id": "GDS262_5" }, { "dataset_id": "GDS262", "description": "10 to 12 year mix", "sample_id": [ "GSM4382", "GSM4384" ], "type": "age", "id": "GDS262_6" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS262", "version": 1.0, "instances": "7", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS262.tab", "compression": "gz" } ], [ [ "GDS2622.tab" ], { "title": "Epidermal growth factor effect on mammary epithelial cell line: time course", "description": "Analysis of mammary epithelial MCF10A cells following treatment with epidermal growth factor for various time points up to 480 minutes. Results provide insight into the dynamics of growth factor signaling.", "type": "Expression profiling by array", "pubmed_id": "17322878", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE6784", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2622", "description": "untreated", "sample_id": [ "GSM156771" ], "type": "agent", "id": "GDS2622_1" }, { "dataset_id": "GDS2622", "description": "epidermal growth factor", "sample_id": [ "GSM156772", "GSM156773", "GSM156774", "GSM156775", "GSM156776", "GSM156777", "GSM156778", "GSM156779", "GSM156780", "GSM156781", "GSM156782", "GSM156783" ], "type": "agent", "id": "GDS2622_2" }, { "dataset_id": "GDS2622", "description": "20 min", "sample_id": [ "GSM156772", "GSM156778" ], "type": "time", "id": "GDS2622_3" }, { "dataset_id": "GDS2622", "description": "40 min", "sample_id": [ "GSM156773", "GSM156779" ], "type": "time", "id": "GDS2622_4" }, { "dataset_id": "GDS2622", "description": "60 min", "sample_id": [ "GSM156774", "GSM156780" ], "type": "time", "id": "GDS2622_5" }, { "dataset_id": "GDS2622", "description": "120 min", "sample_id": [ "GSM156775", "GSM156781" ], "type": "time", "id": "GDS2622_6" }, { "dataset_id": "GDS2622", "description": "240 min", "sample_id": [ "GSM156776", "GSM156782" ], "type": "time", "id": "GDS2622_7" }, { "dataset_id": "GDS2622", "description": "480 min", "sample_id": [ "GSM156777", "GSM156783" ], "type": "time", "id": "GDS2622_8" }, { "dataset_id": "GDS2622", "description": "0 min", "sample_id": [ "GSM156771" ], "type": "time", "id": "GDS2622_9" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2622", "version": 1.0, "instances": "13", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2622.tab", "compression": "gz" } ], [ [ "GDS2623.tab" ], { "title": "Epidermal growth factor effect on cervical carcinoma cell line: time course", "description": "Analysis of cervical carcinoma HeLa cells following treatment with epidermal growth factor for various time points up to 480 minutes. Results provide insight into the dynamics of growth factor signaling.", "type": "Expression profiling by array", "pubmed_id": "17322878", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE6783", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2623", "description": "untreated", "sample_id": [ "GSM156764" ], "type": "agent", "id": "GDS2623_1" }, { "dataset_id": "GDS2623", "description": "epidermal growth factor", "sample_id": [ "GSM156765", "GSM156766", "GSM156767", "GSM156768", "GSM156769", "GSM156770" ], "type": "agent", "id": "GDS2623_2" }, { "dataset_id": "GDS2623", "description": "0 min", "sample_id": [ "GSM156764" ], "type": "time", "id": "GDS2623_3" }, { "dataset_id": "GDS2623", "description": "20 min", "sample_id": [ "GSM156765" ], "type": "time", "id": "GDS2623_4" }, { "dataset_id": "GDS2623", "description": "40 min", "sample_id": [ "GSM156766" ], "type": "time", "id": "GDS2623_5" }, { "dataset_id": "GDS2623", "description": "60 min", "sample_id": [ "GSM156767" ], "type": "time", "id": "GDS2623_6" }, { "dataset_id": "GDS2623", "description": "120 min", "sample_id": [ "GSM156768" ], "type": "time", "id": "GDS2623_7" }, { "dataset_id": "GDS2623", "description": "240 min", "sample_id": [ "GSM156769" ], "type": "time", "id": "GDS2623_8" }, { "dataset_id": "GDS2623", "description": "480 min", "sample_id": [ "GSM156770" ], "type": "time", "id": "GDS2623_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2623", "version": 1.0, "instances": "7", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2623.tab", "compression": "gz" } ], [ [ "GDS2624.tab" ], { "title": "Histone deacetylase-2 deficiency effect on the embryonic heart", "description": "Analysis of heart ventricles from histone deacetylase-2 (Hdac2) deficient embryos at embryonic day E17.5. The role of the HDAC family in cardiac myocyte homeostasis is complex. Results provide insight into the role of class I HDAC gene Hdac2 in cardiac development.", "type": "Expression profiling by array", "pubmed_id": "17322895", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6770", "order": "none", "update_date": "Apr 19 2007", "subsets": [ { "dataset_id": "GDS2624", "description": "wild type", "sample_id": [ "GSM156165", "GSM156167" ], "type": "genotype/variation", "id": "GDS2624_1" }, { "dataset_id": "GDS2624", "description": "HDAC2 null mutant", "sample_id": [ "GSM156166", "GSM156168" ], "type": "genotype/variation", "id": "GDS2624_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2624", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2624.tab", "compression": "gz" } ], [ [ "GDS2625.tab" ], { "title": "mRNA decapping activator edc3 null mutant", "description": "Analysis of edc3 null mutant cells. EDC3 encodes an mRNA decapping activator. Results provide insight into the role of Edc3p in mRNA decay.", "type": "Expression profiling by array", "pubmed_id": "17317628", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6647", "order": "none", "update_date": "Apr 11 2007", "subsets": [ { "dataset_id": "GDS2625", "description": "wild type", "sample_id": [ "GSM153907", "GSM153909", "GSM153911", "GSM153913", "GSM153915" ], "type": "genotype/variation", "id": "GDS2625_1" }, { "dataset_id": "GDS2625", "description": "edc3 null mutant", "sample_id": [ "GSM153908", "GSM153910", "GSM153912", "GSM153914", "GSM153916" ], "type": "genotype/variation", "id": "GDS2625_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2625", "version": 1.0, "instances": "10", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2625.tab", "compression": "gz" } ], [ [ "GDS2626.tab" ], { "title": "Epidermal growth factor and heregulin effect on breast cancer cell line: dose response and time course", "description": "Analysis of MCF-7 breast cancer cells treated with various doses of epidermal growth factor (EGF) or heregulin (HRG) for up to 90 minutes. EGF and HRG induce distinct kinase kinetics and phenotypes of MCF-7 cells. Results provide insight into the linkage between signaling dynamics and cell fate.", "type": "Expression profiling by array", "pubmed_id": "17142811", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "57", "value_type": "count", "reference_series": "GSE6462", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2626", "description": "control for EGF", "sample_id": [ "GSM148516" ], "type": "agent", "id": "GDS2626_1" }, { "dataset_id": "GDS2626", "description": "control for HRG", "sample_id": [ "GSM148517" ], "type": "agent", "id": "GDS2626_2" }, { "dataset_id": "GDS2626", "description": "EGF", "sample_id": [ "GSM148518", "GSM148519", "GSM148520", "GSM148521", "GSM148522", "GSM148523", "GSM148524", "GSM148525", "GSM148526", "GSM148527", "GSM148528", "GSM148529", "GSM148530", "GSM148531", "GSM148532", "GSM148533", "GSM148534", "GSM148535", "GSM148536", "GSM148537", "GSM148538", "GSM148539", "GSM148540", "GSM148541", "GSM148542", "GSM148543", "GSM148544" ], "type": "agent", "id": "GDS2626_3" }, { "dataset_id": "GDS2626", "description": "HRG", "sample_id": [ "GSM148545", "GSM148546", "GSM148547", "GSM148548", "GSM148549", "GSM148550", "GSM148551", "GSM148552", "GSM148553", "GSM148554", "GSM148555", "GSM148556", "GSM148557", "GSM148558", "GSM148559", "GSM148560", "GSM148561", "GSM148562", "GSM148563", "GSM148564", "GSM148565", "GSM148566", "GSM148567", "GSM148568", "GSM148569", "GSM148570", "GSM148571", "GSM148572" ], "type": "agent", "id": "GDS2626_4" }, { "dataset_id": "GDS2626", "description": "0 nM", "sample_id": [ "GSM148516", "GSM148517" ], "type": "dose", "id": "GDS2626_5" }, { "dataset_id": "GDS2626", "description": "0.1 nM", "sample_id": [ "GSM148518", "GSM148519", "GSM148520", "GSM148521", "GSM148522", "GSM148523", "GSM148524", "GSM148545", "GSM148546", "GSM148547", "GSM148548", "GSM148549", "GSM148550", "GSM148551" ], "type": "dose", "id": "GDS2626_6" }, { "dataset_id": "GDS2626", "description": "0.5 nM", "sample_id": [ "GSM148525", "GSM148526", "GSM148527", "GSM148528", "GSM148529", "GSM148530", "GSM148531", "GSM148552", "GSM148553", "GSM148554", "GSM148555", "GSM148556", "GSM148557", "GSM148558" ], "type": "dose", "id": "GDS2626_7" }, { "dataset_id": "GDS2626", "description": "1.0 nM", "sample_id": [ "GSM148532", "GSM148533", "GSM148534", "GSM148535", "GSM148536", "GSM148537", "GSM148538", "GSM148559", "GSM148560", "GSM148561", "GSM148562", "GSM148563", "GSM148564", "GSM148565" ], "type": "dose", "id": "GDS2626_8" }, { "dataset_id": "GDS2626", "description": "10 nM", "sample_id": [ "GSM148539", "GSM148540", "GSM148541", "GSM148542", "GSM148543", "GSM148544", "GSM148566", "GSM148567", "GSM148568", "GSM148569", "GSM148570", "GSM148571", "GSM148572" ], "type": "dose", "id": "GDS2626_9" }, { "dataset_id": "GDS2626", "description": "0 min", "sample_id": [ "GSM148516", "GSM148517" ], "type": "time", "id": "GDS2626_10" }, { "dataset_id": "GDS2626", "description": "5 min", "sample_id": [ "GSM148518", "GSM148525", "GSM148532", "GSM148539", "GSM148545", "GSM148552", "GSM148559", "GSM148566" ], "type": "time", "id": "GDS2626_11" }, { "dataset_id": "GDS2626", "description": "10 min", "sample_id": [ "GSM148519", "GSM148526", "GSM148533", "GSM148540", "GSM148546", "GSM148553", "GSM148560", "GSM148567" ], "type": "time", "id": "GDS2626_12" }, { "dataset_id": "GDS2626", "description": "15 min", "sample_id": [ "GSM148520", "GSM148527", "GSM148534", "GSM148541", "GSM148547", "GSM148554", "GSM148561", "GSM148568" ], "type": "time", "id": "GDS2626_13" }, { "dataset_id": "GDS2626", "description": "30 min", "sample_id": [ "GSM148521", "GSM148528", "GSM148535", "GSM148542", "GSM148548", "GSM148555", "GSM148562", "GSM148569" ], "type": "time", "id": "GDS2626_14" }, { "dataset_id": "GDS2626", "description": "45 min", "sample_id": [ "GSM148522", "GSM148529", "GSM148536", "GSM148543", "GSM148549", "GSM148556", "GSM148563", "GSM148570" ], "type": "time", "id": "GDS2626_15" }, { "dataset_id": "GDS2626", "description": "60 min", "sample_id": [ "GSM148523", "GSM148530", "GSM148537", "GSM148550", "GSM148557", "GSM148564", "GSM148571" ], "type": "time", "id": "GDS2626_16" }, { "dataset_id": "GDS2626", "description": "90 min", "sample_id": [ "GSM148524", "GSM148531", "GSM148538", "GSM148544", "GSM148551", "GSM148558", "GSM148565", "GSM148572" ], "type": "time", "id": "GDS2626_17" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2626", "version": 1.0, "instances": "57", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2626.tab", "compression": "gz" } ], [ [ "GDS2627.tab" ], { "title": "Chromosome 4-specific protein Painting of fourth D2 mutant", "description": "Analysis of first instar larvae containing a chromosome 4 specific protein POF null mutation. POF is an autosome-specific protein that regulates gene expression in chromosome 4 in its entirety. Results provide insight into the molecular mechanisms that regulate chromosome 4 specific gene expression.", "type": "Expression profiling by array", "pubmed_id": "17318176", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE5984", "order": "none", "update_date": "Apr 20 2007", "subsets": [ { "dataset_id": "GDS2627", "description": "wild type", "sample_id": [ "GSM139089", "GSM139092", "GSM139094" ], "type": "genotype/variation", "id": "GDS2627_1" }, { "dataset_id": "GDS2627", "description": "POF null mutant", "sample_id": [ "GSM139078", "GSM139080", "GSM139082", "GSM139086" ], "type": "genotype/variation", "id": "GDS2627_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2627", "version": 1.0, "instances": "7", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2627.tab", "compression": "gz" } ], [ [ "GDS2628.tab" ], { "title": "Vitamin D effect on bronchial smooth muscle cells", "description": "Analysis of bronchial muscle cells treated with 1alpha,25-dihydroxy-vitamin D3, the ligand for the vitamin D receptor (VDR). Genetic variants in VDR are associated with asthma. Results provide insight into the molecular basis of this association.", "type": "Expression profiling by array", "pubmed_id": "17213369", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5145", "order": "none", "update_date": "Apr 13 2007", "subsets": [ { "dataset_id": "GDS2628", "description": "control", "sample_id": [ "GSM116104", "GSM116105", "GSM116106" ], "type": "agent", "id": "GDS2628_1" }, { "dataset_id": "GDS2628", "description": "vitamin D", "sample_id": [ "GSM116101", "GSM116102", "GSM116103" ], "type": "agent", "id": "GDS2628_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2628", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2628.tab", "compression": "gz" } ], [ [ "GDS2629.tab" ], { "title": "Epithelial transcription factor Get-1 deficiency effect on embryonic skin", "description": "Analysis of skins of embryos lacking Grainyhead-like epithelial transactivator (Get-1). Results provide insight into the role of Get-1 in epidermal differentiation.", "type": "Expression profiling by array", "pubmed_id": "16949565", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7381", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2629", "description": "wild type", "sample_id": [ "GSM177486", "GSM177491", "GSM177492" ], "type": "genotype/variation", "id": "GDS2629_1" }, { "dataset_id": "GDS2629", "description": "Get-1 null mutant", "sample_id": [ "GSM177490", "GSM177547", "GSM177548" ], "type": "genotype/variation", "id": "GDS2629_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2629", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2629.tab", "compression": "gz" } ], [ [ "GDS2630.tab" ], { "title": "Proapoptotic BH3-only protein Nix deficiency effect on the spleen", "description": "Analysis of spleens of mutants lacking Nix, a proapoptotic BH3-only factor that is transcriptionally induced during erythropoiesis. Erythropoiesis requires a critical balance between proapoptotic and antipaoptotic pathways. Results provide insight into the role of Nix in erythropoiesis.", "type": "Expression profiling by array", "pubmed_id": "17420462", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7020", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2630", "description": "wild type", "sample_id": [ "GSM162086", "GSM162087", "GSM162088", "GSM162089" ], "type": "genotype/variation", "id": "GDS2630_1" }, { "dataset_id": "GDS2630", "description": "Nix null mutant", "sample_id": [ "GSM162082", "GSM162083", "GSM162084", "GSM162085" ], "type": "genotype/variation", "id": "GDS2630_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2630", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2630.tab", "compression": "gz" } ], [ [ "GDS2631.tab" ], { "title": "Anoxia effect on rice coleoptiles", "description": "Analysis of coleoptiles of rice grown under anaerobic conditions. Rice seeds are capable of germinating in the absence of oxygen. Under anoxia, rice coleoptiles reach lengths greater than that of aerobically grown rice. Results provide insight into the control of anaerobic carbohydrate metabolism.", "type": "Expression profiling by array", "pubmed_id": "17369434", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6908", "order": "none", "update_date": "Apr 16 2007", "subsets": [ { "dataset_id": "GDS2631", "description": "control", "sample_id": [ "GSM159172", "GSM159173" ], "type": "stress", "id": "GDS2631_1" }, { "dataset_id": "GDS2631", "description": "anoxia", "sample_id": [ "GSM159271", "GSM159272" ], "type": "stress", "id": "GDS2631_2" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS2631", "version": 1.0, "instances": "4", "variables": 50379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2631.tab", "compression": "gz" } ], [ [ "GDS2632.tab" ], { "title": "Cytokinin effect on rice roots and leaves: time course", "description": "Analysis of rice roots and leaves 30 and 120 minutes after treatment with the cytokinin trans-zeatin (tZ). Cytokinins (CKs) are a class of plant hormones that regulate the growth and development of plants. Results provide insight into the molecular mechanisms regulated by CK in rice.", "type": "Expression profiling by array", "pubmed_id": "17293362", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE6719", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2632", "description": "control", "sample_id": [ "GSM154829", "GSM154831", "GSM154832", "GSM154939", "GSM154940", "GSM154941", "GSM154945", "GSM154946", "GSM154947", "GSM154951", "GSM154952", "GSM154953" ], "type": "agent", "id": "GDS2632_1" }, { "dataset_id": "GDS2632", "description": "trans-zeatin", "sample_id": [ "GSM154833", "GSM154937", "GSM154938", "GSM154942", "GSM154943", "GSM154944", "GSM154948", "GSM154949", "GSM154950", "GSM154954", "GSM154955", "GSM154956" ], "type": "agent", "id": "GDS2632_2" }, { "dataset_id": "GDS2632", "description": "root", "sample_id": [ "GSM154829", "GSM154831", "GSM154832", "GSM154833", "GSM154937", "GSM154938", "GSM154939", "GSM154940", "GSM154941", "GSM154942", "GSM154943", "GSM154944" ], "type": "tissue", "id": "GDS2632_3" }, { "dataset_id": "GDS2632", "description": "leaf", "sample_id": [ "GSM154945", "GSM154946", "GSM154947", "GSM154948", "GSM154949", "GSM154950", "GSM154951", "GSM154952", "GSM154953", "GSM154954", "GSM154955", "GSM154956" ], "type": "tissue", "id": "GDS2632_4" }, { "dataset_id": "GDS2632", "description": "30 min", "sample_id": [ "GSM154829", "GSM154831", "GSM154832", "GSM154833", "GSM154937", "GSM154938", "GSM154945", "GSM154946", "GSM154947", "GSM154948", "GSM154949", "GSM154950" ], "type": "time", "id": "GDS2632_5" }, { "dataset_id": "GDS2632", "description": "120 min", "sample_id": [ "GSM154939", "GSM154940", "GSM154941", "GSM154942", "GSM154943", "GSM154944", "GSM154951", "GSM154952", "GSM154953", "GSM154954", "GSM154955", "GSM154956" ], "type": "time", "id": "GDS2632_6" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS2632", "version": 1.0, "instances": "24", "variables": 50381, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2632.tab", "compression": "gz" } ], [ [ "GDS2633.tab" ], { "title": "Cytokinin-inducible type-A response regulator OsRR6 overexpression effect on rice leaves", "description": "Analysis of transgenic rice leaves overexpressing OsRR6, a cytokinin (CK)-inducible type-A response regulator. Results provide insight into the role of OsRR6 in CK signaling and further the understanding of the function of CK in rice.", "type": "Expression profiling by array", "pubmed_id": "17293362", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6720", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2633", "description": "control", "sample_id": [ "GSM154957", "GSM154958" ], "type": "protocol", "id": "GDS2633_1" }, { "dataset_id": "GDS2633", "description": "OsRR6 overexpression", "sample_id": [ "GSM154959", "GSM154960" ], "type": "protocol", "id": "GDS2633_2" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS2633", "version": 1.0, "instances": "4", "variables": 50379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2633.tab", "compression": "gz" } ], [ [ "GDS2635.tab" ], { "title": "Invasive ductal and lobular breast carcinomas", "description": "Analysis of invasive ductal carcinoma (IDC) cells, invasive lobular carcinoma (ILC) cells, and their normal counterparts. Cells obtained from postmenopausal breast cancer patients. Results provide insight into the molecular differences between IDC and ILC.", "type": "Expression profiling by array", "pubmed_id": "17389037", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE5764", "order": "none", "update_date": "Apr 16 2007", "subsets": [ { "dataset_id": "GDS2635", "description": "lobular control", "sample_id": [ "GSM134586", "GSM134589", "GSM134688", "GSM134691", "GSM134694", "GSM134697", "GSM134700", "GSM134703", "GSM134706", "GSM134709" ], "type": "disease state", "id": "GDS2635_1" }, { "dataset_id": "GDS2635", "description": "ductal control", "sample_id": [ "GSM134584", "GSM134588", "GSM134687", "GSM134690", "GSM134693", "GSM134696", "GSM134699", "GSM134702", "GSM134705", "GSM134708" ], "type": "disease state", "id": "GDS2635_2" }, { "dataset_id": "GDS2635", "description": "invasive lobular carcinoma", "sample_id": [ "GSM134587", "GSM134591", "GSM134689", "GSM134692", "GSM134695" ], "type": "disease state", "id": "GDS2635_3" }, { "dataset_id": "GDS2635", "description": "invasive ductal carcinoma", "sample_id": [ "GSM134698", "GSM134701", "GSM134704", "GSM134707", "GSM134710" ], "type": "disease state", "id": "GDS2635_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2635", "version": 1.0, "instances": "30", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2635.tab", "compression": "gz" } ], [ [ "GDS2636.tab" ], { "title": "Retinoschisis model", "description": "Analysis of retinas from postnatal day 7 mutants lacking retinoschisin (RS1h), an animal model for retinoschisis (RS). RS is a recessive retinal dystrophy accompanied by macular disease often resulting in early-onset vision loss. Results provide insight into the pathogenesis of RS.", "type": "Expression profiling by array", "pubmed_id": [ "17251492", "20709948" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5581", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2636", "description": "wild type", "sample_id": [ "GSM130322", "GSM130323", "GSM130324" ], "type": "genotype/variation", "id": "GDS2636_1" }, { "dataset_id": "GDS2636", "description": "Rs1h null mutant", "sample_id": [ "GSM130325", "GSM130326", "GSM130327" ], "type": "genotype/variation", "id": "GDS2636_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2636", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2636.tab", "compression": "gz" } ], [ [ "GDS2637.tab" ], { "title": "Keratinocyte cell line response to a (56)Fe ion beam", "description": "Analysis of keratinocytes exposed to a (56)Fe ion beam. The (56)Fe ion beam is used as a surrogate for high-energy, heavy ion space radiation. Results provide insight into the risk at the cellular level to irradiation during space travel.", "type": "Expression profiling by array", "pubmed_id": "17392591", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6299", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2637", "description": "control", "sample_id": [ "GSM144733", "GSM144734", "GSM144735" ], "type": "agent", "id": "GDS2637_1" }, { "dataset_id": "GDS2637", "description": "radiation", "sample_id": [ "GSM144736", "GSM144737", "GSM144738" ], "type": "agent", "id": "GDS2637_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2637", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2637.tab", "compression": "gz" } ], [ [ "GDS2638.tab" ], { "title": "Uterus response to 17beta-estradiol: time course", "description": "Analysis of uteri from overiectomized animals at various lengths of time up to 24 hours following treatment with 17beta-estradiol (E2). Results provide insight into the molecular basis of the uterotrophic effect induced by a physiological dose of E2.", "type": "Expression profiling by array", "pubmed_id": "17361005", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6219", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2638", "description": "control", "sample_id": [ "GSM143369" ], "type": "agent", "id": "GDS2638_1" }, { "dataset_id": "GDS2638", "description": "estradiol", "sample_id": [ "GSM143485", "GSM143486", "GSM143487", "GSM143488", "GSM143489" ], "type": "agent", "id": "GDS2638_2" }, { "dataset_id": "GDS2638", "description": "0 h", "sample_id": [ "GSM143369" ], "type": "time", "id": "GDS2638_3" }, { "dataset_id": "GDS2638", "description": "1 h", "sample_id": [ "GSM143486" ], "type": "time", "id": "GDS2638_4" }, { "dataset_id": "GDS2638", "description": "3 h", "sample_id": [ "GSM143487" ], "type": "time", "id": "GDS2638_5" }, { "dataset_id": "GDS2638", "description": "6 h", "sample_id": [ "GSM143485" ], "type": "time", "id": "GDS2638_6" }, { "dataset_id": "GDS2638", "description": "12 h", "sample_id": [ "GSM143488" ], "type": "time", "id": "GDS2638_7" }, { "dataset_id": "GDS2638", "description": "24 h", "sample_id": [ "GSM143489" ], "type": "time", "id": "GDS2638_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2638", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2638.tab", "compression": "gz" } ], [ [ "GDS2639.tab" ], { "title": "Aging and cognitive impairment: hippocampus", "description": "Analysis of hippocampi from aged learning-impaired animals on the last day of training in the Morris water maze (MWZ) or 21 days post-training. The MWZ task is a dorsal hippocampal-dependent task. Results provide insight into the molecular basis of aging-related cognitive impairment.", "type": "Expression profiling by array", "pubmed_id": "17376971", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "78", "value_type": "count", "reference_series": "GSE5666", "order": "none", "update_date": "Apr 27 2007", "subsets": [ { "dataset_id": "GDS2639", "description": "young", "sample_id": [ "GSM132486", "GSM132489", "GSM132490", "GSM132491", "GSM132492", "GSM132493", "GSM132501", "GSM132502", "GSM132503", "GSM132504", "GSM132505", "GSM132506", "GSM132507", "GSM132509", "GSM132510", "GSM132511", "GSM132525", "GSM132526", "GSM132527", "GSM132528", "GSM132529", "GSM132530", "GSM132543", "GSM132544", "GSM132545", "GSM132546", "GSM132547", "GSM132548", "GSM132549" ], "type": "age", "id": "GDS2639_1" }, { "dataset_id": "GDS2639", "description": "old", "sample_id": [ "GSM132484", "GSM132485", "GSM132487", "GSM132488", "GSM132494", "GSM132495", "GSM132496", "GSM132497", "GSM132498", "GSM132499", "GSM132500", "GSM132508", "GSM132512", "GSM132513", "GSM132514", "GSM132515", "GSM132516", "GSM132517", "GSM132518", "GSM132519", "GSM132520", "GSM132521", "GSM132522", "GSM132523", "GSM132524", "GSM132531", "GSM132532", "GSM132533", "GSM132534", "GSM132535", "GSM132536", "GSM132537", "GSM132538", "GSM132539", "GSM132540", "GSM132541", "GSM132542", "GSM132550", "GSM132551", "GSM132552", "GSM132553", "GSM132554", "GSM132555", "GSM132556", "GSM132557", "GSM132558", "GSM132559", "GSM132560", "GSM132561" ], "type": "age", "id": "GDS2639_2" }, { "dataset_id": "GDS2639", "description": "not applicable", "sample_id": [ "GSM132500", "GSM132501", "GSM132509", "GSM132510", "GSM132511", "GSM132518", "GSM132519", "GSM132523", "GSM132524", "GSM132525", "GSM132526", "GSM132527", "GSM132528", "GSM132529", "GSM132530", "GSM132557", "GSM132558", "GSM132559", "GSM132560", "GSM132561" ], "type": "disease state", "id": "GDS2639_3" }, { "dataset_id": "GDS2639", "description": "unimpaired", "sample_id": [ "GSM132486", "GSM132489", "GSM132490", "GSM132491", "GSM132492", "GSM132493", "GSM132502", "GSM132503", "GSM132504", "GSM132505", "GSM132506", "GSM132507", "GSM132543", "GSM132544", "GSM132545", "GSM132546", "GSM132547", "GSM132548", "GSM132549", "GSM132484", "GSM132485", "GSM132488", "GSM132494", "GSM132495", "GSM132496", "GSM132497", "GSM132498", "GSM132499", "GSM132512", "GSM132513", "GSM132520", "GSM132521", "GSM132522", "GSM132533", "GSM132536", "GSM132537", "GSM132539", "GSM132540", "GSM132541" ], "type": "disease state", "id": "GDS2639_4" }, { "dataset_id": "GDS2639", "description": "impaired", "sample_id": [ "GSM132487", "GSM132508", "GSM132514", "GSM132515", "GSM132516", "GSM132517", "GSM132531", "GSM132532", "GSM132534", "GSM132535", "GSM132538", "GSM132542", "GSM132550", "GSM132551", "GSM132552", "GSM132553", "GSM132554", "GSM132555", "GSM132556" ], "type": "disease state", "id": "GDS2639_5" }, { "dataset_id": "GDS2639", "description": "untrained", "sample_id": [ "GSM132500", "GSM132501", "GSM132509", "GSM132510", "GSM132511", "GSM132518", "GSM132519", "GSM132523", "GSM132524", "GSM132525", "GSM132526", "GSM132527", "GSM132528", "GSM132529", "GSM132530", "GSM132557", "GSM132558", "GSM132559", "GSM132560", "GSM132561" ], "type": "protocol", "id": "GDS2639_6" }, { "dataset_id": "GDS2639", "description": "5 days training", "sample_id": [ "GSM132486", "GSM132487", "GSM132488", "GSM132495", "GSM132496", "GSM132497", "GSM132498", "GSM132499", "GSM132505", "GSM132506", "GSM132507", "GSM132508", "GSM132515", "GSM132521", "GSM132537", "GSM132538", "GSM132539", "GSM132540", "GSM132542", "GSM132544", "GSM132545", "GSM132546", "GSM132547", "GSM132548", "GSM132549", "GSM132550", "GSM132551", "GSM132552", "GSM132554", "GSM132556" ], "type": "protocol", "id": "GDS2639_7" }, { "dataset_id": "GDS2639", "description": "21 days post-training", "sample_id": [ "GSM132484", "GSM132485", "GSM132489", "GSM132490", "GSM132491", "GSM132492", "GSM132493", "GSM132494", "GSM132502", "GSM132503", "GSM132504", "GSM132512", "GSM132513", "GSM132514", "GSM132516", "GSM132517", "GSM132520", "GSM132522", "GSM132531", "GSM132532", "GSM132533", "GSM132534", "GSM132535", "GSM132536", "GSM132541", "GSM132543", "GSM132553", "GSM132555" ], "type": "protocol", "id": "GDS2639_8" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2639", "version": 1.0, "instances": "78", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2639.tab", "compression": "gz" } ], [ [ "GDS264.tab" ], { "title": "Duchenne muscular dystrophy (HG-U95D)", "description": "Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.", "type": "Expression profiling by array", "pubmed_id": "11121445", "platform": "GPL94", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12644", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE465", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS264", "description": "normal", "sample_id": [ "GSM1342", "GSM4234", "GSM4239" ], "type": "disease state", "id": "GDS264_1" }, { "dataset_id": "GDS264", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM4398", "GSM4403" ], "type": "disease state", "id": "GDS264_2" }, { "dataset_id": "GDS264", "description": "4 to 13 years", "sample_id": [ "GSM1342", "GSM4234", "GSM4239" ], "type": "age", "id": "GDS264_3" }, { "dataset_id": "GDS264", "description": "5 to 6 years", "sample_id": [ "GSM4398", "GSM4403" ], "type": "age", "id": "GDS264_4" } ], "taxid": "9606", "genes": 11408, "aggregation_function": "mean", "name": "GDS264", "version": 1.0, "instances": "5", "variables": 11411, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS264.tab", "compression": "gz" } ], [ [ "GDS2640.tab" ], { "title": "Multiple myeloma model", "description": "Analysis of multiple myeloma (MM) tumors and splenic B cells from transgenics overexpressing XBP-1s. XBP-1s is a spliced isoform of XBP-1, a factor that governs unfolded protein/ER stress response and plasma-cell development. Results provide insight into the role of XBP-1 in MM pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17418411", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE6980", "order": "none", "update_date": "Apr 27 2007", "subsets": [ { "dataset_id": "GDS2640", "description": "wild type", "sample_id": [ "GSM160730", "GSM160731", "GSM160739", "GSM160860", "GSM160861" ], "type": "strain", "id": "GDS2640_1" }, { "dataset_id": "GDS2640", "description": "XBP1s transgenic", "sample_id": [ "GSM160864", "GSM160865", "GSM160866", "GSM160867", "GSM160868", "GSM160869", "GSM160880", "GSM160881", "GSM160882", "GSM160883", "GSM160884" ], "type": "strain", "id": "GDS2640_2" }, { "dataset_id": "GDS2640", "description": "B cell", "sample_id": [ "GSM160730", "GSM160731", "GSM160739", "GSM160860", "GSM160861", "GSM160864", "GSM160865", "GSM160866", "GSM160867", "GSM160868" ], "type": "specimen", "id": "GDS2640_3" }, { "dataset_id": "GDS2640", "description": "tumor", "sample_id": [ "GSM160869", "GSM160880", "GSM160881", "GSM160882", "GSM160883", "GSM160884" ], "type": "specimen", "id": "GDS2640_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2640", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2640.tab", "compression": "gz" } ], [ [ "GDS2641.tab" ], { "title": "IRAK-4 kinase deficient fibroblast response to IL-1: time course", "description": "Analysis of embryonic fibroblasts from IRAK-4 kinase deficient mutants following stimulation with IL-1beta for 1 or 4 hours. Results provide insight into the role of IRAK-4 in the inflammatory responses mediated by the IL-1 receptor and Toll-like receptor 7.", "type": "Expression profiling by array", "pubmed_id": "17337443", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6789", "order": "none", "update_date": "Apr 17 2007", "subsets": [ { "dataset_id": "GDS2641", "description": "wild type", "sample_id": [ "GSM155304", "GSM156795", "GSM156796", "GSM156797", "GSM156798", "GSM156799" ], "type": "genotype/variation", "id": "GDS2641_1" }, { "dataset_id": "GDS2641", "description": "IRAK-4 mutant", "sample_id": [ "GSM156800", "GSM156801", "GSM156802", "GSM156803", "GSM156804", "GSM156805" ], "type": "genotype/variation", "id": "GDS2641_2" }, { "dataset_id": "GDS2641", "description": "untreated", "sample_id": [ "GSM155304", "GSM156795", "GSM156800", "GSM156801" ], "type": "agent", "id": "GDS2641_3" }, { "dataset_id": "GDS2641", "description": "IL-1beta", "sample_id": [ "GSM156796", "GSM156797", "GSM156798", "GSM156799", "GSM156802", "GSM156803", "GSM156804", "GSM156805" ], "type": "agent", "id": "GDS2641_4" }, { "dataset_id": "GDS2641", "description": "1 h", "sample_id": [ "GSM156796", "GSM156797", "GSM156802", "GSM156803" ], "type": "time", "id": "GDS2641_5" }, { "dataset_id": "GDS2641", "description": "4 h", "sample_id": [ "GSM155304", "GSM156795", "GSM156798", "GSM156799", "GSM156800", "GSM156801", "GSM156804", "GSM156805" ], "type": "time", "id": "GDS2641_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2641", "version": 1.0, "instances": "12", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2641.tab", "compression": "gz" } ], [ [ "GDS2642.tab" ], { "title": "Crohn's disease and ulcerative colitis", "description": "Analysis of colonoscopic biopsies from patients with Crohn\u2019s disease (CD) or ulcerative colitis (UC). CD and UC are inflammatory bowel diseases with variable, overlapping clinical features and complex pathophysiologies. Results provide insight into the pathogenesis of CD and UC.", "type": "Expression profiling by array", "pubmed_id": "17262812", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE6731", "order": "none", "update_date": "Apr 27 2007", "subsets": [ { "dataset_id": "GDS2642", "description": "normal", "sample_id": [ "GSM155564", "GSM155565", "GSM155566", "GSM155567" ], "type": "disease state", "id": "GDS2642_1" }, { "dataset_id": "GDS2642", "description": "Crohn's disease", "sample_id": [ "GSM155568", "GSM155569", "GSM155570", "GSM155571", "GSM155572", "GSM155573", "GSM155574", "GSM155575", "GSM155576", "GSM155577", "GSM155578", "GSM155579", "GSM155580", "GSM155581", "GSM155582", "GSM155583", "GSM155584", "GSM155585", "GSM155586" ], "type": "disease state", "id": "GDS2642_2" }, { "dataset_id": "GDS2642", "description": "ulcerative colitis", "sample_id": [ "GSM155587", "GSM155588", "GSM155589", "GSM155590", "GSM155591", "GSM155592", "GSM155593", "GSM155594", "GSM155595" ], "type": "disease state", "id": "GDS2642_3" }, { "dataset_id": "GDS2642", "description": "infectious colitis", "sample_id": [ "GSM155596", "GSM155597" ], "type": "disease state", "id": "GDS2642_4" }, { "dataset_id": "GDS2642", "description": "indeterminate colitis", "sample_id": [ "GSM155598", "GSM155599" ], "type": "disease state", "id": "GDS2642_5" }, { "dataset_id": "GDS2642", "description": "control", "sample_id": [ "GSM155564", "GSM155565", "GSM155566", "GSM155567" ], "type": "specimen", "id": "GDS2642_6" }, { "dataset_id": "GDS2642", "description": "unaffected", "sample_id": [ "GSM155575", "GSM155576", "GSM155577", "GSM155578", "GSM155579", "GSM155580", "GSM155581", "GSM155582", "GSM155583", "GSM155584", "GSM155585", "GSM155586", "GSM155592", "GSM155593", "GSM155594", "GSM155595", "GSM155599" ], "type": "specimen", "id": "GDS2642_7" }, { "dataset_id": "GDS2642", "description": "affected", "sample_id": [ "GSM155568", "GSM155569", "GSM155570", "GSM155571", "GSM155572", "GSM155573", "GSM155574", "GSM155587", "GSM155588", "GSM155589", "GSM155590", "GSM155591", "GSM155596", "GSM155597", "GSM155598" ], "type": "specimen", "id": "GDS2642_8" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2642", "version": 1.0, "instances": "36", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2642.tab", "compression": "gz" } ], [ [ "GDS2643.tab" ], { "title": "Waldenstrom's macroglobulinemia: B lymphocytes and plasma cells", "description": "Analysis of B lymphocytes (BL) and plasma cells (PC) from patients with Waldenstrom's macroglobulinemia (WM), a B-lymphoproliferative disorder (BLPD). Results provide insight into differences between PC and BL from WM and their cell counterpart in chronic lymphocytic leukemia and multiple myeloma.", "type": "Expression profiling by array", "pubmed_id": "17252022", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE6691", "order": "none", "update_date": "Apr 30 2007", "subsets": [ { "dataset_id": "GDS2643", "description": "normal", "sample_id": [ "GSM154423", "GSM154424", "GSM154425", "GSM154426", "GSM154427", "GSM154428", "GSM154429", "GSM154430", "GSM154434", "GSM154436", "GSM154437", "GSM154438", "GSM154439" ], "type": "disease state", "id": "GDS2643_1" }, { "dataset_id": "GDS2643", "description": "Waldenstrom's macroglobulinemia", "sample_id": [ "GSM154403", "GSM154404", "GSM154405", "GSM154406", "GSM154407", "GSM154408", "GSM154409", "GSM154410", "GSM154411", "GSM154412", "GSM154413", "GSM154414", "GSM154415", "GSM154416", "GSM154417", "GSM154418", "GSM154419", "GSM154420", "GSM154421", "GSM154422" ], "type": "disease state", "id": "GDS2643_2" }, { "dataset_id": "GDS2643", "description": "chronic lymphocytic leukemia", "sample_id": [ "GSM154203", "GSM154204", "GSM154205", "GSM154206", "GSM154207", "GSM154208", "GSM154209", "GSM154210", "GSM154211", "GSM154213", "GSM154214" ], "type": "disease state", "id": "GDS2643_3" }, { "dataset_id": "GDS2643", "description": "multiple myeloma", "sample_id": [ "GSM154217", "GSM154219", "GSM154220", "GSM154221", "GSM154223", "GSM154224", "GSM154225", "GSM154227", "GSM154228", "GSM154229", "GSM154231", "GSM154232" ], "type": "disease state", "id": "GDS2643_4" }, { "dataset_id": "GDS2643", "description": "B lymphocyte", "sample_id": [ "GSM154423", "GSM154424", "GSM154425", "GSM154426", "GSM154427", "GSM154428", "GSM154429", "GSM154430", "GSM154403", "GSM154404", "GSM154405", "GSM154406", "GSM154407", "GSM154408", "GSM154409", "GSM154410", "GSM154411", "GSM154412", "GSM154203", "GSM154204", "GSM154205", "GSM154206", "GSM154207", "GSM154208", "GSM154209", "GSM154210", "GSM154211", "GSM154213", "GSM154214" ], "type": "cell type", "id": "GDS2643_5" }, { "dataset_id": "GDS2643", "description": "plasma cell", "sample_id": [ "GSM154434", "GSM154436", "GSM154437", "GSM154438", "GSM154439", "GSM154413", "GSM154414", "GSM154415", "GSM154416", "GSM154417", "GSM154418", "GSM154419", "GSM154420", "GSM154421", "GSM154422", "GSM154217", "GSM154219", "GSM154220", "GSM154221", "GSM154223", "GSM154224", "GSM154225", "GSM154227", "GSM154228", "GSM154229", "GSM154231", "GSM154232" ], "type": "cell type", "id": "GDS2643_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2643", "version": 1.0, "instances": "56", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2643.tab", "compression": "gz" } ], [ [ "GDS2645.tab" ], { "title": "Irradiation effect on peripheral blood mononuclear cells: dose response", "description": "Analysis of peripheral blood mononuclear cells from C57Bl6 females exposed to a low, intermediate, or lethal dose of total body irradiation. Results used to define gene expression signatures for exposure to different doses of radiation.", "type": "Expression profiling by array", "pubmed_id": "17407386", "platform": "GPL4783", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "31781", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log2 ratio", "reference_series": "GSE6873", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS2645", "description": "untreated", "sample_id": [ "GSM158484", "GSM158485", "GSM158486", "GSM158487", "GSM158488", "GSM158489", "GSM158490" ], "type": "agent", "id": "GDS2645_1" }, { "dataset_id": "GDS2645", "description": "low radiation", "sample_id": [ "GSM158491", "GSM158492", "GSM158493", "GSM158494", "GSM158495", "GSM158496", "GSM158497" ], "type": "agent", "id": "GDS2645_2" }, { "dataset_id": "GDS2645", "description": "intermediate radiation", "sample_id": [ "GSM158498", "GSM158499", "GSM158500", "GSM158501", "GSM158502", "GSM158503", "GSM158504" ], "type": "agent", "id": "GDS2645_3" }, { "dataset_id": "GDS2645", "description": "lethal radiation", "sample_id": [ "GSM158505", "GSM158506", "GSM158507", "GSM158508", "GSM158509", "GSM158510", "GSM158511" ], "type": "agent", "id": "GDS2645_4" } ], "taxid": "10090", "genes": 26926, "aggregation_function": "mean", "name": "GDS2645", "version": 1.0, "instances": "28", "variables": 26928, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2645.tab", "compression": "gz" } ], [ [ "GDS2647.tab" ], { "title": "Asthma model: lungs", "description": "Comparison of whole lungs of wild-type and recombinase activating gene (RAG) deficient animals sensitized and then challenged with the allergen ovalbumin. RAG deficient animals do not develop allergic asthma. Results provide insight into the molecular basis of the allergic asthmatic response.", "type": "Expression profiling by array", "pubmed_id": "17437023", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE6858", "order": "none", "update_date": "Apr 30 2007", "subsets": [ { "dataset_id": "GDS2647", "description": "control", "sample_id": [ "GSM158132", "GSM158133", "GSM158136", "GSM158137", "GSM158140", "GSM158141", "GSM158144", "GSM158145" ], "type": "agent", "id": "GDS2647_1" }, { "dataset_id": "GDS2647", "description": "allergen", "sample_id": [ "GSM158134", "GSM158135", "GSM158138", "GSM158139", "GSM158142", "GSM158143", "GSM158146", "GSM158147" ], "type": "agent", "id": "GDS2647_2" }, { "dataset_id": "GDS2647", "description": "wild type", "sample_id": [ "GSM158136", "GSM158137", "GSM158138", "GSM158139", "GSM158144", "GSM158145", "GSM158146", "GSM158147" ], "type": "genotype/variation", "id": "GDS2647_3" }, { "dataset_id": "GDS2647", "description": "RAG null mutant", "sample_id": [ "GSM158132", "GSM158133", "GSM158134", "GSM158135", "GSM158140", "GSM158141", "GSM158142", "GSM158143" ], "type": "genotype/variation", "id": "GDS2647_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2647", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2647.tab", "compression": "gz" } ], [ [ "GDS2648.tab" ], { "title": "Palmitate effect on myoblast cell line", "description": "Analysis of myoblasts treated with the saturated fatty acid palmitate. Muscle expression of PPAR coactivator 1 (PGC-1) is reduced in models of obesity. Palmitate decreases the expression of PGC-1. Results provide insight into the molecular basis of the link between overnutrition, obesity, and PGC-1.", "type": "Expression profiling by array", "pubmed_id": "17416903", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6766", "order": "none", "update_date": "Apr 30 2007", "subsets": [ { "dataset_id": "GDS2648", "description": "control", "sample_id": [ "GSM152022", "GSM152023", "GSM152024" ], "type": "agent", "id": "GDS2648_1" }, { "dataset_id": "GDS2648", "description": "palmitate", "sample_id": [ "GSM152025", "GSM152026", "GSM152027" ], "type": "agent", "id": "GDS2648_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2648", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2648.tab", "compression": "gz" } ], [ [ "GDS2649.tab" ], { "title": "HIV infection effect on CD4+ and CD8+ T cells", "description": "Analysis of CD4+ and CD8+ T cells from HIV patients at different clinical stages and rates of disease progression. Changes in T-cell function are a hallmark of HIV infection. Results provide insight into the pathogenic mechanisms in HIV infections that lead to these changes in T-cell function.", "type": "Expression profiling by array", "pubmed_id": "17251300", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE6740", "order": "none", "update_date": "May 01 2007", "subsets": [ { "dataset_id": "GDS2649", "description": "CD4+ T", "sample_id": [ "GSM154936", "GSM155180", "GSM155182", "GSM155184", "GSM155186", "GSM155189", "GSM155192", "GSM155200", "GSM155202", "GSM155204", "GSM155218", "GSM155220", "GSM155222", "GSM155224", "GSM155226", "GSM155228", "GSM155230", "GSM155233", "GSM155235", "GSM155237" ], "type": "cell type", "id": "GDS2649_1" }, { "dataset_id": "GDS2649", "description": "CD8+ T", "sample_id": [ "GSM155179", "GSM155181", "GSM155183", "GSM155185", "GSM155187", "GSM155190", "GSM155195", "GSM155201", "GSM155203", "GSM155206", "GSM155219", "GSM155221", "GSM155223", "GSM155225", "GSM155227", "GSM155229", "GSM155232", "GSM155234", "GSM155236", "GSM155238" ], "type": "cell type", "id": "GDS2649_2" }, { "dataset_id": "GDS2649", "description": "early HIV infection", "sample_id": [ "GSM154936", "GSM155179", "GSM155180", "GSM155181", "GSM155182", "GSM155183", "GSM155184", "GSM155185", "GSM155186", "GSM155187" ], "type": "disease state", "id": "GDS2649_3" }, { "dataset_id": "GDS2649", "description": "chronic HIV infection", "sample_id": [ "GSM155189", "GSM155190", "GSM155192", "GSM155195", "GSM155200", "GSM155201", "GSM155202", "GSM155203", "GSM155204", "GSM155206" ], "type": "disease state", "id": "GDS2649_4" }, { "dataset_id": "GDS2649", "description": "non-progressive HIV infection", "sample_id": [ "GSM155218", "GSM155219", "GSM155220", "GSM155221", "GSM155222", "GSM155223", "GSM155224", "GSM155225", "GSM155226", "GSM155227" ], "type": "disease state", "id": "GDS2649_5" }, { "dataset_id": "GDS2649", "description": "uninfected", "sample_id": [ "GSM155228", "GSM155229", "GSM155230", "GSM155232", "GSM155233", "GSM155234", "GSM155235", "GSM155236", "GSM155237", "GSM155238" ], "type": "disease state", "id": "GDS2649_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2649", "version": 1.0, "instances": "40", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2649.tab", "compression": "gz" } ], [ [ "GDS265.tab" ], { "title": "Duchenne muscular dystrophy (HG-U95E)", "description": "Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.", "type": "Expression profiling by array", "pubmed_id": "11121445", "platform": "GPL95", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12639", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE465", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS265", "description": "normal", "sample_id": [ "GSM1348", "GSM4235", "GSM4240" ], "type": "disease state", "id": "GDS265_1" }, { "dataset_id": "GDS265", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM4399", "GSM4404" ], "type": "disease state", "id": "GDS265_2" }, { "dataset_id": "GDS265", "description": "4 to 13 years", "sample_id": [ "GSM1348", "GSM4235", "GSM4240" ], "type": "age", "id": "GDS265_3" }, { "dataset_id": "GDS265", "description": "5 to 6 years", "sample_id": [ "GSM4399", "GSM4404" ], "type": "age", "id": "GDS265_4" } ], "taxid": "9606", "genes": 10350, "aggregation_function": "mean", "name": "GDS265", "version": 1.0, "instances": "5", "variables": 10353, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS265.tab", "compression": "gz" } ], [ [ "GDS2650.tab" ], { "title": "Signal transduction adaptor MyD88 deficient lung response to Chlamydia pneumoniae infection", "description": "Analysis of lungs from MyD88 null mutants following Chlamydia pneumoniae infection. Toll-like receptors and key adaptor protein MyD88 play a critical role in inducing immunity against this microorganism. Results provide insight into the molecular mechanisms underlying this MyD88-mediated induction.", "type": "Expression profiling by array", "pubmed_id": "17374847", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6688", "order": "none", "update_date": "May 02 2007", "subsets": [ { "dataset_id": "GDS2650", "description": "mock", "sample_id": [ "GSM154443", "GSM154444", "GSM154446", "GSM154451", "GSM154452", "GSM154453" ], "type": "infection", "id": "GDS2650_1" }, { "dataset_id": "GDS2650", "description": "C. pneumoniae", "sample_id": [ "GSM154440", "GSM154441", "GSM154442", "GSM154447", "GSM154448", "GSM154449" ], "type": "infection", "id": "GDS2650_2" }, { "dataset_id": "GDS2650", "description": "wild type", "sample_id": [ "GSM154447", "GSM154448", "GSM154449", "GSM154451", "GSM154452", "GSM154453" ], "type": "genotype/variation", "id": "GDS2650_3" }, { "dataset_id": "GDS2650", "description": "myd88 null", "sample_id": [ "GSM154440", "GSM154441", "GSM154442", "GSM154443", "GSM154444", "GSM154446" ], "type": "genotype/variation", "id": "GDS2650_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2650", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2650.tab", "compression": "gz" } ], [ [ "GDS2651.tab" ], { "title": "Macrophage cell line response to Chlamydia pneumoniae infection", "description": "Analysis of ANA-1 macrophage cells infected with Chlamydia pneumoniae, an intracellular bacterium that causes pneumonia. Results provide insight into the contribution of the macrophage cell type in host defense against C. pneumoniae.", "type": "Expression profiling by array", "pubmed_id": "17374847", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6690", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2651", "description": "uninfected", "sample_id": [ "GSM154460", "GSM154461" ], "type": "infection", "id": "GDS2651_1" }, { "dataset_id": "GDS2651", "description": "infected", "sample_id": [ "GSM154463", "GSM154464" ], "type": "infection", "id": "GDS2651_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2651", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2651.tab", "compression": "gz" } ], [ [ "GDS2653.tab" ], { "title": "Sequestosome 1 and dipeptidylpeptidase III overexpression effect on neuroblastoma cell line", "description": "Analysis of IMR-32 neuroblastoma cells overexpressing sequestosome 1 (SQSTM1) or dipeptidylpeptidase III (DPP3). SQSTM1 and DPP3 activate the antioxidant response element (ARE). Results provide insight into mechanisms regulating the activation of the ARE.", "type": "Expression profiling by array", "pubmed_id": "17360324", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6451", "order": "none", "update_date": "Apr 23 2007", "subsets": [ { "dataset_id": "GDS2653", "description": "control", "sample_id": [ "GSM148453", "GSM148454" ], "type": "protocol", "id": "GDS2653_1" }, { "dataset_id": "GDS2653", "description": "DPP3 overexpression", "sample_id": [ "GSM148455", "GSM148456" ], "type": "protocol", "id": "GDS2653_2" }, { "dataset_id": "GDS2653", "description": "SQSTM1 overexpression", "sample_id": [ "GSM148457", "GSM148458" ], "type": "protocol", "id": "GDS2653_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2653", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2653.tab", "compression": "gz" } ], [ [ "GDS2654.tab" ], { "title": "Neurological aging models: retinas and hippocampi", "description": "Analysis of retinas and hippocampi of SAMP8 and SAMP10 animals at 3 and 16 months of age. SAMP8 and SAMP10 are inbred animal models of accelerated neurological senescence. Results provide insight into the molecular mechanisms underlying neurological aging.", "type": "Expression profiling by array", "pubmed_id": "15960800", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE6238", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2654", "description": "normal", "sample_id": [ "GSM143742", "GSM143743", "GSM143744", "GSM143745", "GSM143756", "GSM143757", "GSM143758", "GSM143759", "GSM143760" ], "type": "disease state", "id": "GDS2654_1" }, { "dataset_id": "GDS2654", "description": "accelerated aging", "sample_id": [ "GSM143734", "GSM143735", "GSM143736", "GSM143737", "GSM143738", "GSM143739", "GSM143740", "GSM143741", "GSM143746", "GSM143747", "GSM143748", "GSM143749", "GSM143750", "GSM143751", "GSM143752", "GSM143753", "GSM143754", "GSM143755" ], "type": "disease state", "id": "GDS2654_2" }, { "dataset_id": "GDS2654", "description": "SAMP1", "sample_id": [ "GSM143742", "GSM143743", "GSM143744", "GSM143745", "GSM143756", "GSM143757", "GSM143758", "GSM143759", "GSM143760" ], "type": "strain", "id": "GDS2654_3" }, { "dataset_id": "GDS2654", "description": "SAMP8", "sample_id": [ "GSM143738", "GSM143739", "GSM143740", "GSM143741", "GSM143751", "GSM143752", "GSM143753", "GSM143754", "GSM143755" ], "type": "strain", "id": "GDS2654_4" }, { "dataset_id": "GDS2654", "description": "SAMP10", "sample_id": [ "GSM143734", "GSM143735", "GSM143736", "GSM143737", "GSM143746", "GSM143747", "GSM143748", "GSM143749", "GSM143750" ], "type": "strain", "id": "GDS2654_5" }, { "dataset_id": "GDS2654", "description": "hippocampus", "sample_id": [ "GSM143746", "GSM143747", "GSM143748", "GSM143749", "GSM143750", "GSM143751", "GSM143752", "GSM143753", "GSM143754", "GSM143755", "GSM143756", "GSM143757", "GSM143758", "GSM143759", "GSM143760" ], "type": "tissue", "id": "GDS2654_6" }, { "dataset_id": "GDS2654", "description": "retina", "sample_id": [ "GSM143734", "GSM143735", "GSM143736", "GSM143737", "GSM143738", "GSM143739", "GSM143740", "GSM143741", "GSM143742", "GSM143743", "GSM143744", "GSM143745" ], "type": "tissue", "id": "GDS2654_7" }, { "dataset_id": "GDS2654", "description": "3 mo", "sample_id": [ "GSM143736", "GSM143737", "GSM143740", "GSM143741", "GSM143744", "GSM143745", "GSM143749", "GSM143750", "GSM143754", "GSM143755", "GSM143759", "GSM143760" ], "type": "age", "id": "GDS2654_8" }, { "dataset_id": "GDS2654", "description": "16 mo", "sample_id": [ "GSM143734", "GSM143735", "GSM143738", "GSM143739", "GSM143742", "GSM143743", "GSM143746", "GSM143747", "GSM143748", "GSM143751", "GSM143752", "GSM143753", "GSM143756", "GSM143757", "GSM143758" ], "type": "age", "id": "GDS2654_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2654", "version": 1.0, "instances": "27", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2654.tab", "compression": "gz" } ], [ [ "GDS2655.tab" ], { "title": "Fetal and adult reticulocytes (HG-U133A)", "description": "Analysis of circulating blood reticulocytes from umbilical cords and normal adults. Reticulocytes are immature red blood cells containing residual RNA. Results provide insight into the molecular basis of terminal erythroid differentiation.", "type": "Expression profiling by array", "pubmed_id": "17405831", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE6236", "order": "ordered", "update_date": "Apr 25 2007", "subsets": [ { "dataset_id": "GDS2655", "description": "fetal", "sample_id": [ "GSM143586", "GSM143587", "GSM143588", "GSM143589", "GSM143590", "GSM143591", "GSM143592", "GSM143593", "GSM143594", "GSM143595", "GSM143596", "GSM143597", "GSM143598", "GSM143599" ], "type": "development stage", "id": "GDS2655_1" }, { "dataset_id": "GDS2655", "description": "adult", "sample_id": [ "GSM143572", "GSM143573", "GSM143574", "GSM143575", "GSM143576", "GSM143577", "GSM143578", "GSM143579", "GSM143580", "GSM143581", "GSM143582", "GSM143583", "GSM143584", "GSM143585" ], "type": "development stage", "id": "GDS2655_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2655", "version": 1.0, "instances": "28", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2655.tab", "compression": "gz" } ], [ [ "GDS2656.tab" ], { "title": "Fetal and adult reticulocytes (HG-U133B)", "description": "Analysis of circulating blood reticulocytes from umbilical cords and normal adults. Reticulocytes are immature red blood cells containing residual RNA. Results provide insight into the molecular basis of terminal erythroid differentiation.", "type": "Expression profiling by array", "pubmed_id": "17405831", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE6236", "order": "ordered", "update_date": "Apr 25 2007", "subsets": [ { "dataset_id": "GDS2656", "description": "fetal", "sample_id": [ "GSM143677", "GSM143678", "GSM143679", "GSM143680", "GSM143681", "GSM143682", "GSM143713", "GSM143714", "GSM143715", "GSM143716", "GSM143718", "GSM143719", "GSM143720", "GSM143721" ], "type": "development stage", "id": "GDS2656_1" }, { "dataset_id": "GDS2656", "description": "adult", "sample_id": [ "GSM143671", "GSM143672", "GSM143673", "GSM143674", "GSM143675", "GSM143676", "GSM143703", "GSM143706", "GSM143707", "GSM143708", "GSM143709", "GSM143710", "GSM143711", "GSM143712" ], "type": "development stage", "id": "GDS2656_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2656", "version": 1.0, "instances": "28", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2656.tab", "compression": "gz" } ], [ [ "GDS2657.tab" ], { "title": "miR-124 overexpression: time course", "description": "Analysis of HepG2 cells overexpressing miR-124 for up to 120 hours. Results combined with a computational method for predicting miRNA targets to identify targets of miR-124.", "type": "Expression profiling by array", "pubmed_id": "16549876", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE6207", "order": "none", "update_date": "May 03 2007", "subsets": [ { "dataset_id": "GDS2657", "description": "control", "sample_id": [ "GSM143386", "GSM143388", "GSM143390", "GSM143392", "GSM143394", "GSM143396", "GSM143398" ], "type": "protocol", "id": "GDS2657_1" }, { "dataset_id": "GDS2657", "description": "miR-124 overexpression", "sample_id": [ "GSM143385", "GSM143387", "GSM143389", "GSM143391", "GSM143393", "GSM143395", "GSM143397" ], "type": "protocol", "id": "GDS2657_2" }, { "dataset_id": "GDS2657", "description": "4 h", "sample_id": [ "GSM143385", "GSM143386" ], "type": "time", "id": "GDS2657_3" }, { "dataset_id": "GDS2657", "description": "8 h", "sample_id": [ "GSM143387", "GSM143388" ], "type": "time", "id": "GDS2657_4" }, { "dataset_id": "GDS2657", "description": "16 h", "sample_id": [ "GSM143389", "GSM143390" ], "type": "time", "id": "GDS2657_5" }, { "dataset_id": "GDS2657", "description": "24 h", "sample_id": [ "GSM143391", "GSM143392" ], "type": "time", "id": "GDS2657_6" }, { "dataset_id": "GDS2657", "description": "32 h", "sample_id": [ "GSM143393", "GSM143394" ], "type": "time", "id": "GDS2657_7" }, { "dataset_id": "GDS2657", "description": "72 h", "sample_id": [ "GSM143395", "GSM143396" ], "type": "time", "id": "GDS2657_8" }, { "dataset_id": "GDS2657", "description": "120 h", "sample_id": [ "GSM143397", "GSM143398" ], "type": "time", "id": "GDS2657_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2657", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2657.tab", "compression": "gz" } ], [ [ "GDS2658.tab" ], { "title": "Histone deacetylase Sirt1 overexpression effect on the heart", "description": "Analysis of transgenic hearts overexpressing Sirt1, a class III histone deacetylase. Sirt1 protects against apoptosis and mediates the survival of cardiac myocytes and neurons under stress in vitro. Results provide insight into the in vivo function of Sirt1 in the heart.", "type": "Expression profiling by array", "pubmed_id": "17446436", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE7407", "order": "none", "update_date": "May 03 2007", "subsets": [ { "dataset_id": "GDS2658", "description": "control", "sample_id": [ "GSM178747", "GSM178748" ], "type": "protocol", "id": "GDS2658_1" }, { "dataset_id": "GDS2658", "description": "Sirt1 overexpression", "sample_id": [ "GSM178749", "GSM178751" ], "type": "protocol", "id": "GDS2658_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2658", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2658.tab", "compression": "gz" } ], [ [ "GDS2659.tab" ], { "title": "Adipogenesis in vitro (Mu11K-A)", "description": "Analysis of differentiating 3T3-L1 preadipocytes at various time points up to 28 days after induction of adipogenesis using a standard differentiation cocktail of methylisobutylxanthine, dexamethasone, and insulin (MDI). Results provide insight into the molecular mechanisms regulating adipogenesis.", "type": "Expression profiling by array", "pubmed_id": "17276354", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6795", "order": "none", "update_date": "Apr 25 2007", "subsets": [ { "dataset_id": "GDS2659", "description": "preconfluent", "sample_id": [ "GSM156862" ], "type": "other", "id": "GDS2659_1" }, { "dataset_id": "GDS2659", "description": "confluent", "sample_id": [ "GSM156863" ], "type": "other", "id": "GDS2659_2" }, { "dataset_id": "GDS2659", "description": "adipogenesis", "sample_id": [ "GSM156864", "GSM156865", "GSM156866", "GSM156867", "GSM156868", "GSM156869", "GSM156870", "GSM156871" ], "type": "other", "id": "GDS2659_3" }, { "dataset_id": "GDS2659", "description": "control", "sample_id": [ "GSM156862", "GSM156863" ], "type": "time", "id": "GDS2659_4" }, { "dataset_id": "GDS2659", "description": "6 h", "sample_id": [ "GSM156864" ], "type": "time", "id": "GDS2659_5" }, { "dataset_id": "GDS2659", "description": "12 h", "sample_id": [ "GSM156865" ], "type": "time", "id": "GDS2659_6" }, { "dataset_id": "GDS2659", "description": "24 h", "sample_id": [ "GSM156866" ], "type": "time", "id": "GDS2659_7" }, { "dataset_id": "GDS2659", "description": "2 d", "sample_id": [ "GSM156867" ], "type": "time", "id": "GDS2659_8" }, { "dataset_id": "GDS2659", "description": "3 d", "sample_id": [ "GSM156868" ], "type": "time", "id": "GDS2659_9" }, { "dataset_id": "GDS2659", "description": "4 d", "sample_id": [ "GSM156869" ], "type": "time", "id": "GDS2659_10" }, { "dataset_id": "GDS2659", "description": "7 d", "sample_id": [ "GSM156870" ], "type": "time", "id": "GDS2659_11" }, { "dataset_id": "GDS2659", "description": "28 d", "sample_id": [ "GSM156871" ], "type": "time", "id": "GDS2659_12" }, { "dataset_id": "GDS2659", "description": "control", "sample_id": [ "GSM156862", "GSM156863" ], "type": "agent", "id": "GDS2659_13" }, { "dataset_id": "GDS2659", "description": "MDI differentiation cocktail", "sample_id": [ "GSM156864", "GSM156865", "GSM156866", "GSM156867", "GSM156868", "GSM156869", "GSM156870", "GSM156871" ], "type": "agent", "id": "GDS2659_14" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS2659", "version": 1.0, "instances": "10", "variables": 5676, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2659.tab", "compression": "gz" } ], [ [ "GDS266.tab" ], { "title": "Asthma and atopy (HG-U133A)", "description": "Investigation of CD4+ lymphocytes from patients with and without atopy, in combination with asthma.", "type": "Expression profiling by array", "pubmed_id": "19216740", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE473", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS266", "description": "mild asthma", "sample_id": [ "GSM3921", "GSM3923", "GSM3925", "GSM3927", "GSM3929", "GSM3931", "GSM3933", "GSM3935", "GSM3937", "GSM3939", "GSM3941", "GSM3943", "GSM3945", "GSM3947", "GSM3949" ], "type": "other", "id": "GDS266_1" }, { "dataset_id": "GDS266", "description": "severe asthma", "sample_id": [ "GSM3951", "GSM3953", "GSM3955", "GSM3957", "GSM3959" ], "type": "other", "id": "GDS266_2" }, { "dataset_id": "GDS266", "description": "no asthma", "sample_id": [ "GSM3961", "GSM3963", "GSM3965", "GSM3967", "GSM3969", "GSM3971", "GSM3973", "GSM3975", "GSM3977" ], "type": "other", "id": "GDS266_3" }, { "dataset_id": "GDS266", "description": "atopy", "sample_id": [ "GSM3921", "GSM3923", "GSM3925", "GSM3927", "GSM3929", "GSM3931", "GSM3933", "GSM3935", "GSM3937", "GSM3939", "GSM3941", "GSM3943", "GSM3945", "GSM3951", "GSM3953", "GSM3955", "GSM3957", "GSM3959", "GSM3961", "GSM3963", "GSM3965", "GSM3967", "GSM3969" ], "type": "disease state", "id": "GDS266_4" }, { "dataset_id": "GDS266", "description": "no atopy", "sample_id": [ "GSM3947", "GSM3949", "GSM3971", "GSM3973", "GSM3975", "GSM3977" ], "type": "disease state", "id": "GDS266_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS266", "version": 1.0, "instances": "29", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS266.tab", "compression": "gz" } ], [ [ "GDS2660.tab" ], { "title": "Adipogenesis in vitro (Mu11K-B)", "description": "Analysis of differentiating 3T3-L1 preadipocytes at various time points up to 28 days after induction of adipogenesis using a standard differentiation cocktail of methylisobutylxanthine, dexamethasone, and insulin (MDI). Results provide insight into the molecular mechanisms regulating adipogenesis.", "type": "Expression profiling by array", "pubmed_id": "17276354", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6795", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2660", "description": "preconfluent", "sample_id": [ "GSM156872" ], "type": "other", "id": "GDS2660_1" }, { "dataset_id": "GDS2660", "description": "confluent", "sample_id": [ "GSM156873" ], "type": "other", "id": "GDS2660_2" }, { "dataset_id": "GDS2660", "description": "adipogenesis", "sample_id": [ "GSM156874", "GSM156875", "GSM156876", "GSM156877", "GSM156878", "GSM156879", "GSM156880", "GSM156881" ], "type": "other", "id": "GDS2660_3" }, { "dataset_id": "GDS2660", "description": "control", "sample_id": [ "GSM156872", "GSM156873" ], "type": "time", "id": "GDS2660_4" }, { "dataset_id": "GDS2660", "description": "6 h", "sample_id": [ "GSM156874" ], "type": "time", "id": "GDS2660_5" }, { "dataset_id": "GDS2660", "description": "12 h", "sample_id": [ "GSM156875" ], "type": "time", "id": "GDS2660_6" }, { "dataset_id": "GDS2660", "description": "24 h", "sample_id": [ "GSM156876" ], "type": "time", "id": "GDS2660_7" }, { "dataset_id": "GDS2660", "description": "2 d", "sample_id": [ "GSM156877" ], "type": "time", "id": "GDS2660_8" }, { "dataset_id": "GDS2660", "description": "3 d", "sample_id": [ "GSM156878" ], "type": "time", "id": "GDS2660_9" }, { "dataset_id": "GDS2660", "description": "4 d", "sample_id": [ "GSM156879" ], "type": "time", "id": "GDS2660_10" }, { "dataset_id": "GDS2660", "description": "7 d", "sample_id": [ "GSM156880" ], "type": "time", "id": "GDS2660_11" }, { "dataset_id": "GDS2660", "description": "28 d", "sample_id": [ "GSM156881" ], "type": "time", "id": "GDS2660_12" }, { "dataset_id": "GDS2660", "description": "control", "sample_id": [ "GSM156872", "GSM156873" ], "type": "agent", "id": "GDS2660_13" }, { "dataset_id": "GDS2660", "description": "MDI differentiation cocktail", "sample_id": [ "GSM156874", "GSM156875", "GSM156876", "GSM156877", "GSM156878", "GSM156879", "GSM156880", "GSM156881" ], "type": "agent", "id": "GDS2660_14" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS2660", "version": 1.0, "instances": "10", "variables": 6164, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2660.tab", "compression": "gz" } ], [ [ "GDS2661.tab" ], { "title": "Various adult tissues (Mu11K-A)", "description": "Analysis of various adult tissues, including in white adipose tissue (WAT). The differential expression of genes in WAT was compared to gene expression in differentiating 3T3-L1 preadipocytes (GDS2659).", "type": "Expression profiling by array", "pubmed_id": "17276354", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE6795", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2661", "description": "pancreas", "sample_id": [ "GSM156852" ], "type": "tissue", "id": "GDS2661_1" }, { "dataset_id": "GDS2661", "description": "muscle", "sample_id": [ "GSM156853" ], "type": "tissue", "id": "GDS2661_2" }, { "dataset_id": "GDS2661", "description": "liver", "sample_id": [ "GSM156854" ], "type": "tissue", "id": "GDS2661_3" }, { "dataset_id": "GDS2661", "description": "hypothalamus", "sample_id": [ "GSM156855" ], "type": "tissue", "id": "GDS2661_4" }, { "dataset_id": "GDS2661", "description": "white adipose tissue", "sample_id": [ "GSM156856" ], "type": "tissue", "id": "GDS2661_5" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS2661", "version": 1.0, "instances": "5", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2661.tab", "compression": "gz" } ], [ [ "GDS2662.tab" ], { "title": "Various adult tissues (Mu11K-B)", "description": "Analysis of various adult tissues, including in white adipose tissue (WAT). The differential expression of genes in WAT was compared to gene expression in differentiating 3T3-L1 preadipocytes (GDS2660).", "type": "Expression profiling by array", "pubmed_id": "17276354", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE6795", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2662", "description": "pancreas", "sample_id": [ "GSM156857" ], "type": "tissue", "id": "GDS2662_1" }, { "dataset_id": "GDS2662", "description": "muscle", "sample_id": [ "GSM156858" ], "type": "tissue", "id": "GDS2662_2" }, { "dataset_id": "GDS2662", "description": "liver", "sample_id": [ "GSM156859" ], "type": "tissue", "id": "GDS2662_3" }, { "dataset_id": "GDS2662", "description": "hypothalamus", "sample_id": [ "GSM156860" ], "type": "tissue", "id": "GDS2662_4" }, { "dataset_id": "GDS2662", "description": "white adipose tissue", "sample_id": [ "GSM156861" ], "type": "tissue", "id": "GDS2662_5" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS2662", "version": 1.0, "instances": "5", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2662.tab", "compression": "gz" } ], [ [ "GDS2663.tab" ], { "title": "Mre11 deficient sporulating cells", "description": "Analysis of Mre11 deficient cells at meiotic prophase during sporulation. Mre11 is important in homologous recombination, repair of DNA double strand breaks, activation of damage-induced checkpoint, and telomere maintenance. Results provide insight into the role of Mre11 in spore development.", "type": "Expression profiling by array", "pubmed_id": "17396017", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE6620", "order": "none", "update_date": "Apr 24 2007", "subsets": [ { "dataset_id": "GDS2663", "description": "wild type", "sample_id": [ "GSM153627", "GSM153628" ], "type": "genotype/variation", "id": "GDS2663_1" }, { "dataset_id": "GDS2663", "description": "rad50 null", "sample_id": [ "GSM153631", "GSM153632" ], "type": "genotype/variation", "id": "GDS2663_2" }, { "dataset_id": "GDS2663", "description": "spo11 mutant", "sample_id": [ "GSM153633", "GSM153634" ], "type": "genotype/variation", "id": "GDS2663_3" }, { "dataset_id": "GDS2663", "description": "mre11 null", "sample_id": [ "GSM153629", "GSM153630" ], "type": "genotype/variation", "id": "GDS2663_4" }, { "dataset_id": "GDS2663", "description": "premeiosis", "sample_id": [ "GSM153627", "GSM153629", "GSM153631", "GSM153633" ], "type": "development stage", "id": "GDS2663_5" }, { "dataset_id": "GDS2663", "description": "meiotic prophase", "sample_id": [ "GSM153628", "GSM153630", "GSM153632", "GSM153634" ], "type": "development stage", "id": "GDS2663_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2663", "version": 1.0, "instances": "8", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2663.tab", "compression": "gz" } ], [ [ "GDS2664.tab" ], { "title": "Peripheral nerve injury effect on dorsal root ganglion: time course", "description": "Analysis of lumbar dorsal root ganglia at various time points up to 50 days following peripheral nerve injury inflicted by either partial sciatic nerve ligation or chronic constriction. Results provide insight into the molecular mechanisms underlying neuropathic pain.", "type": "Expression profiling by array", "pubmed_id": "17250968", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2636", "order": "none", "update_date": "Apr 24 2007", "subsets": [ { "dataset_id": "GDS2664", "description": "control", "sample_id": [ "GSM50750", "GSM50751", "GSM50752", "GSM50753", "GSM50754", "GSM50755", "GSM50756" ], "type": "protocol", "id": "GDS2664_1" }, { "dataset_id": "GDS2664", "description": "partial sciatic nerve ligation", "sample_id": [ "GSM50743", "GSM50744", "GSM50745", "GSM50746", "GSM50747", "GSM50749", "GSM50748" ], "type": "protocol", "id": "GDS2664_2" }, { "dataset_id": "GDS2664", "description": "chronic constriction", "sample_id": [ "GSM50737", "GSM50738", "GSM50739", "GSM50740", "GSM50741", "GSM50742" ], "type": "protocol", "id": "GDS2664_3" }, { "dataset_id": "GDS2664", "description": "14 d", "sample_id": [ "GSM50737", "GSM50738", "GSM50739", "GSM50743", "GSM50744", "GSM50750", "GSM50751" ], "type": "time", "id": "GDS2664_4" }, { "dataset_id": "GDS2664", "description": "21 d", "sample_id": [ "GSM50740", "GSM50741", "GSM50742", "GSM50745", "GSM50746", "GSM50747", "GSM50752", "GSM50753", "GSM50754" ], "type": "time", "id": "GDS2664_5" }, { "dataset_id": "GDS2664", "description": "50 d", "sample_id": [ "GSM50749", "GSM50748", "GSM50755", "GSM50756" ], "type": "time", "id": "GDS2664_6" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2664", "version": 1.0, "instances": "20", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2664.tab", "compression": "gz" } ], [ [ "GDS2665.tab" ], { "title": "p53 mutant embryo response to radiation", "description": "Analysis of p53 mutant embryos exposed to gamma radiation. Within 90 minutes of radiation exposure, apoptosis is observed in embryonic and post-embryonic tissues of wild type but not p53 mutants. Results provide insight into the molecular basis of this p53-dependent apoptogenic response.", "type": "Expression profiling by array", "pubmed_id": "17310982", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE2780", "order": "none", "update_date": "Apr 25 2007", "subsets": [ { "dataset_id": "GDS2665", "description": "wild type strain w1118", "sample_id": [ "GSM60479", "GSM60480", "GSM60482", "GSM60483" ], "type": "strain", "id": "GDS2665_1" }, { "dataset_id": "GDS2665", "description": "wild type strain yw", "sample_id": [ "GSM60478", "GSM60481" ], "type": "strain", "id": "GDS2665_2" }, { "dataset_id": "GDS2665", "description": "p53 mutant", "sample_id": [ "GSM60484", "GSM60485", "GSM60486", "GSM60487" ], "type": "strain", "id": "GDS2665_3" }, { "dataset_id": "GDS2665", "description": "radiation", "sample_id": [ "GSM60481", "GSM60482", "GSM60483", "GSM60486", "GSM60487" ], "type": "agent", "id": "GDS2665_4" }, { "dataset_id": "GDS2665", "description": "untreated", "sample_id": [ "GSM60478", "GSM60479", "GSM60480", "GSM60484", "GSM60485" ], "type": "agent", "id": "GDS2665_5" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2665", "version": 1.0, "instances": "10", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2665.tab", "compression": "gz" } ], [ [ "GDS2666.tab" ], { "title": "Embryonic R1 stem cell differentiation in vitro (MG-430A)", "description": "Analysis of R1 embryonic stem cells differentiating into embryoid bodies in vitro. Cells examined at various time points up to 14 days after inducing differentiation. Results provide insight into the molecular mechanisms that drive embryonic stem cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "17394647", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE2972", "order": "ordered", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2666", "description": "0 h", "sample_id": [ "GSM64922", "GSM64924", "GSM64926" ], "type": "time", "id": "GDS2666_1" }, { "dataset_id": "GDS2666", "description": "6 h", "sample_id": [ "GSM64928", "GSM64930", "GSM64932" ], "type": "time", "id": "GDS2666_2" }, { "dataset_id": "GDS2666", "description": "12 h", "sample_id": [ "GSM64934", "GSM64936", "GSM64938" ], "type": "time", "id": "GDS2666_3" }, { "dataset_id": "GDS2666", "description": "18 h", "sample_id": [ "GSM64940", "GSM64942", "GSM64944" ], "type": "time", "id": "GDS2666_4" }, { "dataset_id": "GDS2666", "description": "24 h", "sample_id": [ "GSM64946", "GSM64948", "GSM64950" ], "type": "time", "id": "GDS2666_5" }, { "dataset_id": "GDS2666", "description": "36 h", "sample_id": [ "GSM64952", "GSM64954", "GSM64956" ], "type": "time", "id": "GDS2666_6" }, { "dataset_id": "GDS2666", "description": "48 h", "sample_id": [ "GSM64958", "GSM64960", "GSM64962" ], "type": "time", "id": "GDS2666_7" }, { "dataset_id": "GDS2666", "description": "4 d", "sample_id": [ "GSM64964", "GSM64966", "GSM64968" ], "type": "time", "id": "GDS2666_8" }, { "dataset_id": "GDS2666", "description": "7 d", "sample_id": [ "GSM64970", "GSM64972", "GSM64974" ], "type": "time", "id": "GDS2666_9" }, { "dataset_id": "GDS2666", "description": "9 d", "sample_id": [ "GSM64976", "GSM64978", "GSM64980" ], "type": "time", "id": "GDS2666_10" }, { "dataset_id": "GDS2666", "description": "14 d", "sample_id": [ "GSM64982", "GSM64984", "GSM64986" ], "type": "time", "id": "GDS2666_11" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2666", "version": 1.0, "instances": "33", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2666.tab", "compression": "gz" } ], [ [ "GDS2667.tab" ], { "title": "Embryonic R1 stem cell differentiation in vitro (MG-430B)", "description": "Analysis of R1 embryonic stem cells differentiating into embryoid bodies in vitro. Cells examined at various time points up to 14 days after inducing differentiation. 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Cells examined at various time points up to 14 days after inducing differentiation. 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Cells examined at various time points up to 14 days after inducing differentiation. Results provide insight into the molecular mechanisms that drive embryonic stem cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "17394647", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE3231", "order": "ordered", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2671", "description": "0 h", "sample_id": [ "GSM72802", "GSM72804", "GSM72806" ], "type": "time", "id": "GDS2671_1" }, { "dataset_id": "GDS2671", "description": "6 h", "sample_id": [ "GSM72808", "GSM72810", "GSM72812" ], "type": "time", "id": "GDS2671_2" }, { "dataset_id": "GDS2671", "description": "12 h", "sample_id": [ "GSM72814", "GSM72816", "GSM72818" ], "type": "time", "id": "GDS2671_3" }, { "dataset_id": "GDS2671", "description": "18 h", "sample_id": [ "GSM72820", "GSM72822", "GSM72824" ], "type": "time", "id": "GDS2671_4" }, { "dataset_id": "GDS2671", "description": "24 h", "sample_id": [ "GSM72826", "GSM72828", "GSM72830" ], "type": "time", "id": "GDS2671_5" }, { "dataset_id": "GDS2671", "description": "36 h", "sample_id": [ "GSM72832", "GSM72834", "GSM72836" ], "type": "time", "id": "GDS2671_6" }, { "dataset_id": "GDS2671", "description": "48 h", "sample_id": [ "GSM72838", "GSM72840", "GSM72842" ], "type": "time", "id": "GDS2671_7" }, { "dataset_id": "GDS2671", "description": "4 d", "sample_id": [ "GSM72856", "GSM72858", "GSM72860" ], "type": "time", "id": "GDS2671_8" }, { "dataset_id": "GDS2671", "description": "7 d", "sample_id": [ "GSM72844", "GSM72846", "GSM72848" ], "type": "time", "id": "GDS2671_9" }, { "dataset_id": "GDS2671", "description": "9 d", "sample_id": [ "GSM72862", "GSM72864", "GSM72866" ], "type": "time", "id": "GDS2671_10" }, { "dataset_id": "GDS2671", "description": "14 d", "sample_id": [ "GSM72850", "GSM72852", "GSM72854" ], "type": "time", "id": "GDS2671_11" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2671", "version": 1.0, "instances": "33", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2671.tab", "compression": "gz" } ], [ [ "GDS2672.tab" ], { "title": "Embryonic V6.5 stem cell differentiation in vitro (MG-430B)", "description": "Analysis of V6.5 embryonic stem cells differentiating into embryoid bodies in vitro. Cells examined at various time points up to 14 days after inducing differentiation. Results provide insight into the molecular mechanisms that drive embryonic stem cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "17394647", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE3231", "order": "ordered", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2672", "description": "0 h", "sample_id": [ "GSM72803", "GSM72805", "GSM72807" ], "type": "time", "id": "GDS2672_1" }, { "dataset_id": "GDS2672", "description": "6 h", "sample_id": [ "GSM72809", "GSM72811", "GSM72813" ], "type": "time", "id": "GDS2672_2" }, { "dataset_id": "GDS2672", "description": "12 h", "sample_id": [ "GSM72815", "GSM72817", "GSM72819" ], "type": "time", "id": "GDS2672_3" }, { "dataset_id": "GDS2672", "description": "18 h", "sample_id": [ "GSM72821", "GSM72823", "GSM72825" ], "type": "time", "id": "GDS2672_4" }, { "dataset_id": "GDS2672", "description": "24 h", "sample_id": [ "GSM72827", "GSM72829", "GSM72831" ], "type": "time", "id": "GDS2672_5" }, { "dataset_id": "GDS2672", "description": "36 h", "sample_id": [ "GSM72833", "GSM72835", "GSM72837" ], "type": "time", "id": "GDS2672_6" }, { "dataset_id": "GDS2672", "description": "48 h", "sample_id": [ "GSM72839", "GSM72841", "GSM72843" ], "type": "time", "id": "GDS2672_7" }, { "dataset_id": "GDS2672", "description": "4 d", "sample_id": [ "GSM72857", "GSM72859", "GSM72861" ], "type": "time", "id": "GDS2672_8" }, { "dataset_id": "GDS2672", "description": "7 d", "sample_id": [ "GSM72845", "GSM72847", "GSM72849" ], "type": "time", "id": "GDS2672_9" }, { "dataset_id": "GDS2672", "description": "9 d", "sample_id": [ "GSM72863", "GSM72865", "GSM72867" ], "type": "time", "id": "GDS2672_10" }, { "dataset_id": "GDS2672", "description": "14 d", "sample_id": [ "GSM72851", "GSM72853", "GSM72855" ], "type": "time", "id": "GDS2672_11" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2672", "version": 1.0, "instances": "33", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2672.tab", "compression": "gz" } ], [ [ "GDS2673.tab" ], { "title": "Pupariation", "description": "Analysis of animals before and after pupariation. A pulse of steroid hormone 20-hydroxyecdysone (20E) at late 3rd instar triggers puparium formation; a second 20E pulse after pupariation marks the prepupal-to-pupal transition. Results provide insight into the molecular mechanisms of 20E signaling.", "type": "Expression profiling by array", "pubmed_id": "16356271", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE3057", "order": "none", "update_date": "May 14 2007", "subsets": [ { "dataset_id": "GDS2673", "description": "third instar larvae", "sample_id": [ "GSM67088", "GSM67089", "GSM67090", "GSM67091", "GSM67092", "GSM67093" ], "type": "development stage", "id": "GDS2673_1" }, { "dataset_id": "GDS2673", "description": "prepupae", "sample_id": [ "GSM67094", "GSM67095", "GSM67096", "GSM67097", "GSM67098", "GSM67099", "GSM67100", "GSM67101", "GSM67102", "GSM67103", "GSM67105", "GSM67106", "GSM67107", "GSM67108", "GSM67109", "GSM67111", "GSM67113", "GSM67114" ], "type": "development stage", "id": "GDS2673_2" }, { "dataset_id": "GDS2673", "description": "pupae", "sample_id": [ "GSM67115", "GSM67116", "GSM67117" ], "type": "development stage", "id": "GDS2673_3" }, { "dataset_id": "GDS2673", "description": "- 18 h", "sample_id": [ "GSM67088", "GSM67089", "GSM67090" ], "type": "time", "id": "GDS2673_4" }, { "dataset_id": "GDS2673", "description": "- 4 h", "sample_id": [ "GSM67091", "GSM67092", "GSM67093" ], "type": "time", "id": "GDS2673_5" }, { "dataset_id": "GDS2673", "description": "0 h", "sample_id": [ "GSM67094", "GSM67095", "GSM67096" ], "type": "time", "id": "GDS2673_6" }, { "dataset_id": "GDS2673", "description": "2 h", "sample_id": [ "GSM67097", "GSM67098", "GSM67099" ], "type": "time", "id": "GDS2673_7" }, { "dataset_id": "GDS2673", "description": "4 h", "sample_id": [ "GSM67100", "GSM67101", "GSM67102" ], "type": "time", "id": "GDS2673_8" }, { "dataset_id": "GDS2673", "description": "6 h", "sample_id": [ "GSM67103", "GSM67105", "GSM67106" ], "type": "time", "id": "GDS2673_9" }, { "dataset_id": "GDS2673", "description": "8 h", "sample_id": [ "GSM67107", "GSM67108", "GSM67109" ], "type": "time", "id": "GDS2673_10" }, { "dataset_id": "GDS2673", "description": "10 h", "sample_id": [ "GSM67111", "GSM67113", "GSM67114" ], "type": "time", "id": "GDS2673_11" }, { "dataset_id": "GDS2673", "description": "12 h", "sample_id": [ "GSM67115", "GSM67116", "GSM67117" ], "type": "time", "id": "GDS2673_12" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2673", "version": 1.0, "instances": "27", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2673.tab", "compression": "gz" } ], [ [ "GDS2674.tab" ], { "title": "20-hydroxyecdysone effect on cultured larval organs", "description": "Analysis of cultured larval organs treated with 20-hydroxyecdysone (20E) alone or in combination with cycloheximide to distinguish primary responses to 20E signal. Organs dissected from third instar larvae. Results provide insight into the molecular events triggered by 20E during insect development.", "type": "Expression profiling by array", "pubmed_id": "16356271", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3060", "order": "none", "update_date": "May 22 2007", "subsets": [ { "dataset_id": "GDS2674", "description": "untreated", "sample_id": [ "GSM67156", "GSM67157", "GSM67158" ], "type": "agent", "id": "GDS2674_1" }, { "dataset_id": "GDS2674", "description": "cycloheximide", "sample_id": [ "GSM67170", "GSM67171", "GSM67172" ], "type": "agent", "id": "GDS2674_2" }, { "dataset_id": "GDS2674", "description": "20E", "sample_id": [ "GSM67159", "GSM67161", "GSM67162" ], "type": "agent", "id": "GDS2674_3" }, { "dataset_id": "GDS2674", "description": "20E and cycloheximide", "sample_id": [ "GSM67165", "GSM67167", "GSM67168" ], "type": "agent", "id": "GDS2674_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2674", "version": 1.0, "instances": "12", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2674.tab", "compression": "gz" } ], [ [ "GDS2675.tab" ], { "title": "Ecdysone receptor knockdown effect on larval metamorphosis", "description": "Analysis of ecdysone receptor (EcR) depleted animals 4 hours before to 4 hours after the start of pupariation. EcR is part of receptor complex for 20-hydroxyecdysone (20E), a hormone that triggers developmental transitions in insects. Results provide insight into the mechanisms regulated by 20E.", "type": "Expression profiling by array", "pubmed_id": "16356271", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3069", "order": "none", "update_date": "Apr 25 2007", "subsets": [ { "dataset_id": "GDS2675", "description": "control", "sample_id": [ "GSM67390", "GSM67391", "GSM67392", "GSM67393", "GSM67394", "GSM67395", "GSM67396", "GSM67397", "GSM67398" ], "type": "protocol", "id": "GDS2675_1" }, { "dataset_id": "GDS2675", "description": "EcR knockdown", "sample_id": [ "GSM67399", "GSM67400", "GSM67401", "GSM67402", "GSM67403", "GSM67404", "GSM67405", "GSM67406", "GSM67407" ], "type": "protocol", "id": "GDS2675_2" }, { "dataset_id": "GDS2675", "description": "third instar larva", "sample_id": [ "GSM67390", "GSM67391", "GSM67392", "GSM67399", "GSM67400", "GSM67401" ], "type": "development stage", "id": "GDS2675_3" }, { "dataset_id": "GDS2675", "description": "prepupa", "sample_id": [ "GSM67393", "GSM67394", "GSM67395", "GSM67396", "GSM67397", "GSM67398", "GSM67402", "GSM67403", "GSM67404", "GSM67405", "GSM67406", "GSM67407" ], "type": "development stage", "id": "GDS2675_4" }, { "dataset_id": "GDS2675", "description": "- 4 h", "sample_id": [ "GSM67390", "GSM67391", "GSM67392", "GSM67399", "GSM67400", "GSM67401" ], "type": "time", "id": "GDS2675_5" }, { "dataset_id": "GDS2675", "description": "0 h", "sample_id": [ "GSM67393", "GSM67394", "GSM67395", "GSM67402", "GSM67403", "GSM67404" ], "type": "time", "id": "GDS2675_6" }, { "dataset_id": "GDS2675", "description": "4 h", "sample_id": [ "GSM67396", "GSM67397", "GSM67398", "GSM67405", "GSM67406", "GSM67407" ], "type": "time", "id": "GDS2675_7" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2675", "version": 1.0, "instances": "18", "variables": 12131, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2675.tab", "compression": "gz" } ], [ [ "GDS2676.tab" ], { "title": "CD38-positive and CD38-negative chronic lymphocytic leukemia cells", "description": "Analysis of paired CD38(+) and CD38(-) chronic lymphocytic leukemia (CLL) cells from six patients. CD38 expression is an important prognostic marker in CLL with high levels of CD38 antigen associated with shorter overall survival. Results provide insight into the molecular basis of this association.", "type": "Expression profiling by array", "pubmed_id": "17287849", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6321", "order": "none", "update_date": "Apr 26 2007", "subsets": [ { "dataset_id": "GDS2676", "description": "patient 1", "sample_id": [ "GSM146300", "GSM146307" ], "type": "individual", "id": "GDS2676_1" }, { "dataset_id": "GDS2676", "description": "patient 2", "sample_id": [ "GSM146308", "GSM146309" ], "type": "individual", "id": "GDS2676_2" }, { "dataset_id": "GDS2676", "description": "patient 3", "sample_id": [ "GSM146310", "GSM146311" ], "type": "individual", "id": "GDS2676_3" }, { "dataset_id": "GDS2676", "description": "patient 4", "sample_id": [ "GSM146312", "GSM146313" ], "type": "individual", "id": "GDS2676_4" }, { "dataset_id": "GDS2676", "description": "patient 5", "sample_id": [ "GSM146314", "GSM146315" ], "type": "individual", "id": "GDS2676_5" }, { "dataset_id": "GDS2676", "description": "patient 6", "sample_id": [ "GSM146334", "GSM146335" ], "type": "individual", "id": "GDS2676_6" }, { "dataset_id": "GDS2676", "description": "CD38 negative", "sample_id": [ "GSM146300", "GSM146308", "GSM146310", "GSM146312", "GSM146314", "GSM146334" ], "type": "cell type", "id": "GDS2676_7" }, { "dataset_id": "GDS2676", "description": "CD38 positive", "sample_id": [ "GSM146307", "GSM146309", "GSM146311", "GSM146313", "GSM146315", "GSM146335" ], "type": "cell type", "id": "GDS2676_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2676", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2676.tab", "compression": "gz" } ], [ [ "GDS268.tab" ], { "title": "Obesity and fatty acid oxidation", "description": "Identification of proteins involved in fatty acid oxidation in skeletal muscle. Fat oxidation may be reduced in morbidly obese individuals. Provides understanding of how obesity contributes to cardiovascular disease via insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "16849634", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE474", "order": "none", "update_date": "Jun 27 2003", "subsets": [ { "dataset_id": "GDS268", "description": "non-obese", "sample_id": [ "GSM3987", "GSM3988", "GSM3989", "GSM3990", "GSM3991", "GSM3992", "GSM3993", "GSM3994" ], "type": "disease state", "id": "GDS268_1" }, { "dataset_id": "GDS268", "description": "obese", "sample_id": [ "GSM3995", "GSM3996", "GSM3997", "GSM3998", "GSM3999", "GSM4000", "GSM4001", "GSM4002" ], "type": "disease state", "id": "GDS268_2" }, { "dataset_id": "GDS268", "description": "morbidly obese", "sample_id": [ "GSM3979", "GSM3980", "GSM3981", "GSM3982", "GSM3983", "GSM3984", "GSM3985", "GSM3986" ], "type": "disease state", "id": "GDS268_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS268", "version": 1.0, "instances": "24", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS268.tab", "compression": "gz" } ], [ [ "GDS2680.tab" ], { "title": "Formaldehyde effect on nasal epithelium: dose response and time course", "description": "Analysis of nasal epithelia exposed to various doses of the carcinogenic pollutant formaldehyde for up to 19 days. Results used as a case study to validate a method that integrates benchmark dose calculations with gene ontology analysis to examine genomic dose-response data.", "type": "Expression profiling by array", "pubmed_id": "17449896", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "98", "value_type": "transformed count", "reference_series": "GSE7002", "order": "none", "update_date": "Apr 30 2007", "subsets": [ { "dataset_id": "GDS2680", "description": "untreated", "sample_id": [ "GSM159777", "GSM159778", "GSM159790", "GSM159791", "GSM159779", "GSM159780", "GSM159781", "GSM159782", "GSM159783", "GSM159785", "GSM159786", "GSM159787", "GSM159788", "GSM159789", "GSM159792", "GSM159793", "GSM159794", "GSM159795", "GSM159796", "GSM159797", "GSM159798", "GSM159799", "GSM159800", "GSM159801", "GSM159802", "GSM159803", "GSM159804", "GSM159805", "GSM159812" ], "type": "agent", "id": "GDS2680_1" }, { "dataset_id": "GDS2680", "description": "formaldehyde", "sample_id": [ "GSM159724", "GSM159725", "GSM159726", "GSM159727", "GSM159728", "GSM159806", "GSM159807", "GSM159808", "GSM159809", "GSM159810", "GSM159811", "GSM159813", "GSM159814", "GSM159815", "GSM159816", "GSM159817", "GSM159818", "GSM159819", "GSM159820", "GSM159821", "GSM159748", "GSM159749", "GSM159750", "GSM159756", "GSM159757", "GSM159758", "GSM159759", "GSM159760", "GSM159761", "GSM159762", "GSM159763", "GSM159764", "GSM159765", "GSM159766", "GSM159767", "GSM159768", "GSM159769", "GSM159773", "GSM159774", "GSM159775", "GSM159776", "GSM159729", "GSM159730", "GSM159731", "GSM159732", "GSM159733", "GSM159734", "GSM159735", "GSM159736", "GSM159737", "GSM159738", "GSM159739", "GSM159740", "GSM159741", "GSM159742", "GSM159743", "GSM159744", "GSM159745", "GSM159746", "GSM159747", "GSM159755", "GSM159770", "GSM159771", "GSM159772", "GSM159784", "GSM159751", "GSM159752", "GSM159753", "GSM159754" ], "type": "agent", "id": "GDS2680_2" }, { "dataset_id": "GDS2680", "description": "0 ppm", "sample_id": [ "GSM159779", "GSM159780", "GSM159781", "GSM159782", "GSM159783", "GSM159785", "GSM159786", "GSM159787", "GSM159788", "GSM159789", "GSM159792", "GSM159793", "GSM159794", "GSM159795", "GSM159796", "GSM159797", "GSM159798", "GSM159799", "GSM159800", "GSM159801", "GSM159802", "GSM159803", "GSM159804", "GSM159805", "GSM159812" ], "type": "dose", "id": "GDS2680_3" }, { "dataset_id": "GDS2680", "description": "0.7 ppm", "sample_id": [ "GSM159724", "GSM159725", "GSM159726", "GSM159727", "GSM159728", "GSM159806", "GSM159807", "GSM159808", "GSM159809", "GSM159810", "GSM159811", "GSM159813", "GSM159814", "GSM159815", "GSM159816", "GSM159817", "GSM159818", "GSM159819", "GSM159820", "GSM159821" ], "type": "dose", "id": "GDS2680_4" }, { "dataset_id": "GDS2680", "description": "2 ppm", "sample_id": [ "GSM159748", "GSM159749", "GSM159750", "GSM159756", "GSM159757", "GSM159758", "GSM159759", "GSM159760", "GSM159761", "GSM159762", "GSM159763", "GSM159764", "GSM159765", "GSM159766", "GSM159767", "GSM159768", "GSM159769", "GSM159773", "GSM159774", "GSM159775", "GSM159776" ], "type": "dose", "id": "GDS2680_5" }, { "dataset_id": "GDS2680", "description": "6 ppm", "sample_id": [ "GSM159729", "GSM159730", "GSM159731", "GSM159732", "GSM159733", "GSM159734", "GSM159735", "GSM159736", "GSM159737", "GSM159738", "GSM159739", "GSM159740", "GSM159741", "GSM159742", "GSM159743", "GSM159744", "GSM159745", "GSM159746", "GSM159747", "GSM159755" ], "type": "dose", "id": "GDS2680_6" }, { "dataset_id": "GDS2680", "description": "15 ppm", "sample_id": [ "GSM159770", "GSM159771", "GSM159772", "GSM159784" ], "type": "dose", "id": "GDS2680_7" }, { "dataset_id": "GDS2680", "description": "0 mM", "sample_id": [ "GSM159777", "GSM159778", "GSM159790", "GSM159791" ], "type": "dose", "id": "GDS2680_8" }, { "dataset_id": "GDS2680", "description": "400 mM", "sample_id": [ "GSM159751", "GSM159752", "GSM159753", "GSM159754" ], "type": "dose", "id": "GDS2680_9" }, { "dataset_id": "GDS2680", "description": "6 h", "sample_id": [ "GSM159727", "GSM159728", "GSM159729", "GSM159738", "GSM159739", "GSM159740", "GSM159751", "GSM159752", "GSM159753", "GSM159754", "GSM159757", "GSM159758", "GSM159759", "GSM159760", "GSM159770", "GSM159771", "GSM159772", "GSM159777", "GSM159778", "GSM159784", "GSM159785", "GSM159786", "GSM159787", "GSM159788", "GSM159789", "GSM159790", "GSM159791", "GSM159796", "GSM159797", "GSM159798", "GSM159806", "GSM159807" ], "type": "time", "id": "GDS2680_10" }, { "dataset_id": "GDS2680", "description": "24 h", "sample_id": [ "GSM159744", "GSM159745", "GSM159746", "GSM159747", "GSM159762", "GSM159763", "GSM159764", "GSM159765", "GSM159802", "GSM159803", "GSM159804", "GSM159805", "GSM159817", "GSM159818", "GSM159819", "GSM159820" ], "type": "time", "id": "GDS2680_11" }, { "dataset_id": "GDS2680", "description": "5 d", "sample_id": [ "GSM159724", "GSM159725", "GSM159726", "GSM159734", "GSM159735", "GSM159736", "GSM159737", "GSM159756", "GSM159766", "GSM159767", "GSM159768", "GSM159769", "GSM159792", "GSM159793", "GSM159794", "GSM159795", "GSM159821" ], "type": "time", "id": "GDS2680_12" }, { "dataset_id": "GDS2680", "description": "8 d", "sample_id": [ "GSM159730", "GSM159731", "GSM159732", "GSM159733", "GSM159748", "GSM159749", "GSM159750", "GSM159761", "GSM159779", "GSM159780", "GSM159781", "GSM159782", "GSM159783", "GSM159808", "GSM159809", "GSM159810", "GSM159811" ], "type": "time", "id": "GDS2680_13" }, { "dataset_id": "GDS2680", "description": "19 d", "sample_id": [ "GSM159741", "GSM159742", "GSM159743", "GSM159755", "GSM159773", "GSM159774", "GSM159775", "GSM159776", "GSM159799", "GSM159800", "GSM159801", "GSM159812", "GSM159813", "GSM159814", "GSM159815", "GSM159816" ], "type": "time", "id": "GDS2680_14" }, { "dataset_id": "GDS2680", "description": "inhalation", "sample_id": [ "GSM159724", "GSM159725", "GSM159726", "GSM159727", "GSM159728", "GSM159806", "GSM159807", "GSM159808", "GSM159809", "GSM159810", "GSM159811", "GSM159813", "GSM159814", "GSM159815", "GSM159816", "GSM159817", "GSM159818", "GSM159819", "GSM159820", "GSM159821", "GSM159779", "GSM159780", "GSM159781", "GSM159782", "GSM159783", "GSM159785", "GSM159786", "GSM159787", "GSM159788", "GSM159789", "GSM159792", "GSM159793", "GSM159794", "GSM159795", "GSM159796", "GSM159797", "GSM159798", "GSM159799", "GSM159800", "GSM159801", "GSM159802", "GSM159803", "GSM159804", "GSM159805", "GSM159812", "GSM159770", "GSM159771", "GSM159772", "GSM159784", "GSM159748", "GSM159749", "GSM159750", "GSM159756", "GSM159757", "GSM159758", "GSM159759", "GSM159760", "GSM159761", "GSM159762", "GSM159763", "GSM159764", "GSM159765", "GSM159766", "GSM159767", "GSM159768", "GSM159769", "GSM159773", "GSM159774", "GSM159775", "GSM159776", "GSM159729", "GSM159730", "GSM159731", "GSM159732", "GSM159733", "GSM159734", "GSM159735", "GSM159736", "GSM159737", "GSM159738", "GSM159739", "GSM159740", "GSM159741", "GSM159742", "GSM159743", "GSM159744", "GSM159745", "GSM159746", "GSM159747", "GSM159755" ], "type": "protocol", "id": "GDS2680_15" }, { "dataset_id": "GDS2680", "description": "instillation", "sample_id": [ "GSM159777", "GSM159778", "GSM159790", "GSM159791", "GSM159751", "GSM159752", "GSM159753", "GSM159754" ], "type": "protocol", "id": "GDS2680_16" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2680", "version": 1.0, "instances": "98", "variables": 24217, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2680.tab", "compression": "gz" } ], [ [ "GDS2681.tab" ], { "title": "Caloric restriction effect on aged cochlea", "description": "Analysis of cochleas of 15 month old C57BL/6 (B6) animals on a calorie restricted diet. The B6 strain is a model of age-related hearing loss or presbycusis. Caloric restriction (CR) prevents late-onset presbycusis in B6. Results provide insight into the molecular basis of this effect of CR.", "type": "Expression profiling by array", "pubmed_id": "16890326", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE4786", "order": "none", "update_date": "May 01 2007", "subsets": [ { "dataset_id": "GDS2681", "description": "4 mo", "sample_id": [ "GSM108106", "GSM108107", "GSM108108" ], "type": "age", "id": "GDS2681_1" }, { "dataset_id": "GDS2681", "description": "15 mo", "sample_id": [ "GSM108100", "GSM108101", "GSM108102", "GSM108103", "GSM108104", "GSM108105" ], "type": "age", "id": "GDS2681_2" }, { "dataset_id": "GDS2681", "description": "normal diet", "sample_id": [ "GSM108103", "GSM108104", "GSM108105", "GSM108106", "GSM108107", "GSM108108" ], "type": "protocol", "id": "GDS2681_3" }, { "dataset_id": "GDS2681", "description": "calorie restricted diet", "sample_id": [ "GSM108100", "GSM108101", "GSM108102" ], "type": "protocol", "id": "GDS2681_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2681", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2681.tab", "compression": "gz" } ], [ [ "GDS2682.tab" ], { "title": "Conjunctiva and cornea comparison", "description": "Analysis of conjunctival (Cnj) and corneal (Co) epithelia, the main cellular components of the ocular surface. Cnj and Co epithelia are embryologically related but phenotypically and functionally disparate. Results provide insight into the molecular basis of these differences.", "type": "Expression profiling by array", "pubmed_id": "17460260", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5543", "order": "none", "update_date": "May 01 2007", "subsets": [ { "dataset_id": "GDS2682", "description": "conjunctiva", "sample_id": [ "GSM126877", "GSM126894", "GSM126896" ], "type": "tissue", "id": "GDS2682_1" }, { "dataset_id": "GDS2682", "description": "cornea", "sample_id": [ "GSM126897", "GSM126899", "GSM126900" ], "type": "tissue", "id": "GDS2682_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2682", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2682.tab", "compression": "gz" } ], [ [ "GDS2686.tab" ], { "title": "MyD88 deficient macrophage response to zymosan", "description": "Analysis of MyD88-deficient macrophages treated with fungal cell wall component zymosan. Zymosan-induced Toll-like receptor (TLR) signaling is transduced via adaptor protein MyD88. Results provide insight into the role of non-TLR innate immune signaling in response to zymosan and pathogenic fungi.", "type": "Expression profiling by array", "pubmed_id": "17312158", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE6376", "order": "none", "update_date": "May 16 2007", "subsets": [ { "dataset_id": "GDS2686", "description": "control", "sample_id": [ "GSM147166", "GSM147167" ], "type": "agent", "id": "GDS2686_1" }, { "dataset_id": "GDS2686", "description": "zymosan", "sample_id": [ "GSM147168", "GSM147169" ], "type": "agent", "id": "GDS2686_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2686", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2686.tab", "compression": "gz" } ], [ [ "GDS2687.tab" ], { "title": "Kruppel-like factor 15 deficient liver and skeletal muscle response to fasting", "description": "Analysis of livers and quadriceps muscles of Kruppel-like factor 15 (KLF15) null mutants after an overnight fast. KLF15 nulls develop hypoglycemia after fasting. Gluconeogenesis (GLC) is essential for preventing hypoglycemia during fasting. Results provide insight into the role of KLF15 in GLC.", "type": "Expression profiling by array", "pubmed_id": "17403374", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE7137", "order": "none", "update_date": "May 01 2007", "subsets": [ { "dataset_id": "GDS2687", "description": "wild type", "sample_id": [ "GSM171937", "GSM171938", "GSM171939", "GSM171940", "GSM171945", "GSM171946", "GSM171947", "GSM171948" ], "type": "genotype/variation", "id": "GDS2687_1" }, { "dataset_id": "GDS2687", "description": "KLF15 null", "sample_id": [ "GSM171941", "GSM171942", "GSM171943", "GSM171944", "GSM171949", "GSM171950", "GSM171951", "GSM171952" ], "type": "genotype/variation", "id": "GDS2687_2" }, { "dataset_id": "GDS2687", "description": "liver", "sample_id": [ "GSM171937", "GSM171938", "GSM171939", "GSM171940", "GSM171941", "GSM171942", "GSM171943", "GSM171944" ], "type": "tissue", "id": "GDS2687_3" }, { "dataset_id": "GDS2687", "description": "skeletal muscle", "sample_id": [ "GSM171945", "GSM171946", "GSM171947", "GSM171948", "GSM171949", "GSM171950", "GSM171951", "GSM171952" ], "type": "tissue", "id": "GDS2687_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2687", "version": 1.0, "instances": "16", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2687.tab", "compression": "gz" } ], [ [ "GDS2688.tab" ], { "title": "Skeletal muscle response to chronic corticosteroid exposure: time course", "description": "Analysis of skeletal muscles of adrenalectomized animals given methylprednisolone (MPL) at a constant rate of infusion for up to 7 days. Results compared to a time series experiment using a single dose of MPL. Results provide insight into the identity of genes regulated by MPL in both regimens.", "type": "Expression profiling by array", "pubmed_id": "17473217", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE5101", "order": "ordered", "update_date": "May 02 2007", "subsets": [ { "dataset_id": "GDS2688", "description": "0 h", "sample_id": [ "GSM112209", "GSM112210", "GSM114869", "GSM115079" ], "type": "time", "id": "GDS2688_1" }, { "dataset_id": "GDS2688", "description": "6 h", "sample_id": [ "GSM114896", "GSM114897", "GSM114898", "GSM114899" ], "type": "time", "id": "GDS2688_2" }, { "dataset_id": "GDS2688", "description": "10 h", "sample_id": [ "GSM114870", "GSM114871", "GSM114872", "GSM114873" ], "type": "time", "id": "GDS2688_3" }, { "dataset_id": "GDS2688", "description": "13 h", "sample_id": [ "GSM114874", "GSM114875", "GSM114876", "GSM114877" ], "type": "time", "id": "GDS2688_4" }, { "dataset_id": "GDS2688", "description": "18 h", "sample_id": [ "GSM114882", "GSM114883", "GSM114884", "GSM114885" ], "type": "time", "id": "GDS2688_5" }, { "dataset_id": "GDS2688", "description": "24 h", "sample_id": [ "GSM114886", "GSM115077", "GSM114893", "GSM115078" ], "type": "time", "id": "GDS2688_6" }, { "dataset_id": "GDS2688", "description": "36 h", "sample_id": [ "GSM114887", "GSM114888", "GSM114889", "GSM114890" ], "type": "time", "id": "GDS2688_7" }, { "dataset_id": "GDS2688", "description": "48 h", "sample_id": [ "GSM114891", "GSM114892", "GSM114894", "GSM114895" ], "type": "time", "id": "GDS2688_8" }, { "dataset_id": "GDS2688", "description": "72 h", "sample_id": [ "GSM114900", "GSM114901", "GSM114902", "GSM114903" ], "type": "time", "id": "GDS2688_9" }, { "dataset_id": "GDS2688", "description": "96 h", "sample_id": [ "GSM114904", "GSM114905", "GSM114906", "GSM115076" ], "type": "time", "id": "GDS2688_10" }, { "dataset_id": "GDS2688", "description": "168 h", "sample_id": [ "GSM114878", "GSM114879", "GSM114880", "GSM114881" ], "type": "time", "id": "GDS2688_11" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2688", "version": 1.0, "instances": "44", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2688.tab", "compression": "gz" } ], [ [ "GDS2691.tab" ], { "title": "Serine/threonine kinase Tao-1 dominant negative mutation effect on pole cells", "description": "Analysis of pole cells overexpressing a dominant negative Tao-1 mutation. Tao-1 is a member of a conserved family of ste20-related serine/threonine kinases that regulate fundamental cellular processes including apoptosis. Results identify genes regulated by Tao-1 in pole cells undergoing apoptosis.", "type": "Expression profiling by array", "pubmed_id": "17449640", "platform": "GPL4336", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log10 ratio", "reference_series": "GSE7318", "order": "none", "update_date": "May 31 2007", "subsets": [ { "dataset_id": "GDS2691", "description": "wild type", "sample_id": [ "GSM176606", "GSM176611" ], "type": "strain", "id": "GDS2691_1" }, { "dataset_id": "GDS2691", "description": "dominant negative", "sample_id": [ "GSM175764", "GSM175765" ], "type": "strain", "id": "GDS2691_2" } ], "taxid": "7227", "genes": 13970, "aggregation_function": "mean", "name": "GDS2691", "version": 1.0, "instances": "4", "variables": 13972, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2691.tab", "compression": "gz" } ], [ [ "GDS2693.tab" ], { "title": "p38alpha deficiency effect on the fetal liver", "description": "Analysis of embryonic day 13.5 and 15.5 fetal livers lacking p38alpha. p38alpha is a mitogen-activated kinase that controls inflammatory responses and cell proliferation. Results provide insight into the mechanisms underlying the enhanced proliferation of p38alpha-deficient hematopoietic cells.", "type": "Expression profiling by array", "pubmed_id": "17468757", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE7342", "order": "none", "update_date": "Jun 01 2007", "subsets": [ { "dataset_id": "GDS2693", "description": "wild type", "sample_id": [ "GSM177034", "GSM177035", "GSM177036", "GSM177040", "GSM177041", "GSM177042" ], "type": "genotype/variation", "id": "GDS2693_1" }, { "dataset_id": "GDS2693", "description": "p38alpha null", "sample_id": [ "GSM177031", "GSM177032", "GSM177033", "GSM177037", "GSM177038", "GSM177039" ], "type": "genotype/variation", "id": "GDS2693_2" }, { "dataset_id": "GDS2693", "description": "E13.5", "sample_id": [ "GSM177031", "GSM177032", "GSM177033", "GSM177034", "GSM177035", "GSM177036" ], "type": "development stage", "id": "GDS2693_3" }, { "dataset_id": "GDS2693", "description": "E15.5", "sample_id": [ "GSM177037", "GSM177040", "GSM177041", "GSM177042", "GSM177038", "GSM177039" ], "type": "development stage", "id": "GDS2693_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2693", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2693.tab", "compression": "gz" } ], [ [ "GDS2694.tab" ], { "title": "Silent Information Regulator 2-related gene OsSRT1 knockdown effect on rice leaves", "description": "Analysis of rice leaves following RNAi knockdown of OsSRT1, a Silent Information Regulator 2 (SIR2)-related gene. Members of the SIR2 family are NAD(+)-dependent histone deacetylases. OsSRT1is one of the two SIR2-related genes found in rice. Results provide insight into the function of OsSRT1.", "type": "Expression profiling by array", "pubmed_id": "17468215", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7197", "order": "none", "update_date": "May 07 2007", "subsets": [ { "dataset_id": "GDS2694", "description": "wild type", "sample_id": [ "GSM173080", "GSM173086", "GSM173089" ], "type": "protocol", "id": "GDS2694_1" }, { "dataset_id": "GDS2694", "description": "OsSRT1 knockdown", "sample_id": [ "GSM173091", "GSM173093", "GSM173094" ], "type": "protocol", "id": "GDS2694_2" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS2694", "version": 1.0, "instances": "6", "variables": 50379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2694.tab", "compression": "gz" } ], [ [ "GDS2695.tab" ], { "title": "Teratozoospermia (HumanRef-8 BeadChip)", "description": "Analysis of sperm cells from males with consistent and severe teratozoospermia, a condition in which less than 4 percent of sperm cells are morphologically normal. Results provide insight into the molecular basis of a range of teratozoospermic presentations.", "type": "Expression profiling by array", "pubmed_id": "17327269", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE6968", "order": "none", "update_date": "May 22 2007", "subsets": [ { "dataset_id": "GDS2695", "description": "normal", "sample_id": [ "GSM160641", "GSM160642", "GSM160643", "GSM160644" ], "type": "disease state", "id": "GDS2695_1" }, { "dataset_id": "GDS2695", "description": "teratozoospermia", "sample_id": [ "GSM160635", "GSM160636", "GSM160637", "GSM160638", "GSM160639", "GSM160640" ], "type": "disease state", "id": "GDS2695_2" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS2695", "version": 1.0, "instances": "10", "variables": 22008, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2695.tab", "compression": "gz" } ], [ [ "GDS2696.tab" ], { "title": "Teratozoospermia (Human-6 BeadChip)", "description": "Analysis of sperm cells from males with consistent and severe teratozoospermia, a condition in which less than 4 percent of sperm cells are morphologically normal. Results provide insight into the molecular basis of a range of teratozoospermic presentations.", "type": "Expression profiling by array", "pubmed_id": "17327269", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE6967", "order": "none", "update_date": "May 22 2007", "subsets": [ { "dataset_id": "GDS2696", "description": "normal", "sample_id": [ "GSM160625", "GSM160629", "GSM160630", "GSM160631", "GSM160632" ], "type": "disease state", "id": "GDS2696_1" }, { "dataset_id": "GDS2696", "description": "teratozoospermia", "sample_id": [ "GSM160620", "GSM160621", "GSM160622", "GSM160623", "GSM160624", "GSM160626", "GSM160627", "GSM160628" ], "type": "disease state", "id": "GDS2696_2" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS2696", "version": 1.0, "instances": "13", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2696.tab", "compression": "gz" } ], [ [ "GDS2697.tab" ], { "title": "Teratozoospermia (HG-U133 2.0 )", "description": "Analysis of sperm cells from males with consistent and severe teratozoospermia, a condition in which less than 4 percent of sperm cells are morphologically normal. Results provide insight into the molecular basis of a range of teratozoospermic presentations.", "type": "Expression profiling by array", "pubmed_id": "17327269", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE6872", "order": "none", "update_date": "May 07 2007", "subsets": [ { "dataset_id": "GDS2697", "description": "normal", "sample_id": [ "GSM158463", "GSM158464", "GSM158465", "GSM158466", "GSM158467", "GSM158468", "GSM158469", "GSM158470", "GSM158471", "GSM158472", "GSM158473", "GSM158474", "GSM158475" ], "type": "disease state", "id": "GDS2697_1" }, { "dataset_id": "GDS2697", "description": "teratozoospermia", "sample_id": [ "GSM158476", "GSM158477", "GSM158478", "GSM158479", "GSM158480", "GSM158481", "GSM158482", "GSM158483" ], "type": "disease state", "id": "GDS2697_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2697", "version": 1.0, "instances": "21", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2697.tab", "compression": "gz" } ], [ [ "GDS2698.tab" ], { "title": "Synovial sarcoma model", "description": "Analysis of synovial sarcoma-like tumors from transgenics expressing the chimeric human SYT-SSX2 fusion protein. The presence of SYT-SSX transcript is diagnostic for synovial sarcoma. Results provide insight into the role of the SYT-SSX2 fusion protein in the pathogenesis of synovial sarcoma.", "type": "Expression profiling by array", "pubmed_id": "17418413", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE6461", "order": "none", "update_date": "Jun 04 2007", "subsets": [ { "dataset_id": "GDS2698", "description": "control", "sample_id": [ "GSM148507", "GSM148508", "GSM148509", "GSM148510" ], "type": "disease state", "id": "GDS2698_1" }, { "dataset_id": "GDS2698", "description": "tumor", "sample_id": [ "GSM148511", "GSM148512", "GSM148513", "GSM148514", "GSM148515" ], "type": "disease state", "id": "GDS2698_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2698", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2698.tab", "compression": "gz" } ], [ [ "GDS2699.tab" ], { "title": "Mesenchymal and epithelial compartments of the developing intestine", "description": "Analysis of the mesenchymal and epithelial fractions of the embryonic small intestine. Crosstalk between the epithelium and the underlying mesenchyme is required for intestinal development. Results provide insight into the role of the mesenchyme in the determination of the epithelial phenotype.", "type": "Expression profiling by array", "pubmed_id": "17299133", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE6383", "order": "none", "update_date": "Jun 04 2007", "subsets": [ { "dataset_id": "GDS2699", "description": "epithelium", "sample_id": [ "GSM147125", "GSM147127", "GSM147128" ], "type": "tissue", "id": "GDS2699_1" }, { "dataset_id": "GDS2699", "description": "mesenchyme", "sample_id": [ "GSM147129", "GSM147130", "GSM147132" ], "type": "tissue", "id": "GDS2699_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2699", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2699.tab", "compression": "gz" } ], [ [ "GDS270.tab" ], { "title": "Duchenne muscular dystrophy (HG-U95B)", "description": "Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.", "type": "Expression profiling by array", "pubmed_id": "11121445", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE465", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS270", "description": "normal", "sample_id": [ "GSM1339", "GSM4232", "GSM4237" ], "type": "disease state", "id": "GDS270_1" }, { "dataset_id": "GDS270", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM4396" ], "type": "disease state", "id": "GDS270_2" }, { "dataset_id": "GDS270", "description": "4 to 13 years", "sample_id": [ "GSM1339", "GSM4232", "GSM4237" ], "type": "age", "id": "GDS270_3" }, { "dataset_id": "GDS270", "description": "5 to 6 years", "sample_id": [ "GSM4396" ], "type": "age", "id": "GDS270_4" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS270", "version": 1.0, "instances": "4", "variables": 10312, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS270.tab", "compression": "gz" } ], [ [ "GDS2700.tab" ], { "title": "Intestinal polyposis model", "description": "Analysis of intestinal polyps generated by the deletion of the phosphatase PTEN gene from the intestine. Intestinal polyposis results from an abnormal increase in the number of crypts, which contain stem cells. Results provide insight into the relationship between stem cells and polyp formation.", "type": "Expression profiling by array", "pubmed_id": "17237784", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE6078", "order": "none", "update_date": "May 08 2007", "subsets": [ { "dataset_id": "GDS2700", "description": "normal", "sample_id": [ "GSM140792", "GSM140816" ], "type": "disease state", "id": "GDS2700_1" }, { "dataset_id": "GDS2700", "description": "polyp", "sample_id": [ "GSM140813", "GSM140817", "GSM140818" ], "type": "disease state", "id": "GDS2700_2" }, { "dataset_id": "GDS2700", "description": "control", "sample_id": [ "GSM140792", "GSM140816" ], "type": "genotype/variation", "id": "GDS2700_3" }, { "dataset_id": "GDS2700", "description": "PTEN mutant", "sample_id": [ "GSM140813", "GSM140817", "GSM140818" ], "type": "genotype/variation", "id": "GDS2700_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2700", "version": 1.0, "instances": "5", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2700.tab", "compression": "gz" } ], [ [ "GDS2701.tab" ], { "title": "Contraction- and freeze-injured skeletal muscles: time course", "description": "Analysis of skeletal muscles at various time points up to 7 days following injury caused by eccentric contraction (CI) or by freezing (FI). Results provide insight into the molecular events accompanying the degeneration and repair phases of contraction- and trauma-induced muscle injuries.", "type": "Expression profiling by array", "pubmed_id": "17478534", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE5413", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2701", "description": "control", "sample_id": [ "GSM123996", "GSM123997", "GSM123998" ], "type": "time", "id": "GDS2701_1" }, { "dataset_id": "GDS2701", "description": "6 h", "sample_id": [ "GSM123990", "GSM123991", "GSM123992", "GSM124005", "GSM124006", "GSM124007" ], "type": "time", "id": "GDS2701_2" }, { "dataset_id": "GDS2701", "description": "1 d", "sample_id": [ "GSM123873", "GSM123986", "GSM123999", "GSM124000", "GSM124001" ], "type": "time", "id": "GDS2701_3" }, { "dataset_id": "GDS2701", "description": "3 d", "sample_id": [ "GSM123987", "GSM123988", "GSM123989", "GSM124002", "GSM124003", "GSM124004" ], "type": "time", "id": "GDS2701_4" }, { "dataset_id": "GDS2701", "description": "7 d", "sample_id": [ "GSM123993", "GSM123994", "GSM123995", "GSM124008", "GSM124009" ], "type": "time", "id": "GDS2701_5" }, { "dataset_id": "GDS2701", "description": "uninjured", "sample_id": [ "GSM123996", "GSM123997", "GSM123998" ], "type": "protocol", "id": "GDS2701_6" }, { "dataset_id": "GDS2701", "description": "contraction-induced injury", "sample_id": [ "GSM123873", "GSM123986", "GSM123987", "GSM123988", "GSM123989", "GSM123990", "GSM123991", "GSM123992", "GSM123993", "GSM123994", "GSM123995" ], "type": "protocol", "id": "GDS2701_7" }, { "dataset_id": "GDS2701", "description": "freeze-induced injury", "sample_id": [ "GSM123999", "GSM124000", "GSM124001", "GSM124002", "GSM124003", "GSM124004", "GSM124005", "GSM124006", "GSM124007", "GSM124008", "GSM124009" ], "type": "protocol", "id": "GDS2701_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2701", "version": 1.0, "instances": "25", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2701.tab", "compression": "gz" } ], [ [ "GDS2702.tab" ], { "title": "Topoisomerase IIbeta deficiency effect on the developing embryonic brain", "description": "Anlaysis of brains from topoisomerase IIbeta (TopIIbeta) deficient embryos at various ages up to embryonic day 18.5. TopIIbeta null animals exhibit a perinatal death phenotype. Results provide insight into the role of TopIIbeta at the late stages of neuronal differentiation.", "type": "Expression profiling by array", "pubmed_id": "16923961", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5458", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2702", "description": "wild type", "sample_id": [ "GSM124777", "GSM124779", "GSM124781" ], "type": "genotype/variation", "id": "GDS2702_1" }, { "dataset_id": "GDS2702", "description": "topIIbeta null", "sample_id": [ "GSM124772", "GSM124778", "GSM124780" ], "type": "genotype/variation", "id": "GDS2702_2" }, { "dataset_id": "GDS2702", "description": "E14.5", "sample_id": [ "GSM124772", "GSM124777" ], "type": "age", "id": "GDS2702_3" }, { "dataset_id": "GDS2702", "description": "E16.5", "sample_id": [ "GSM124778", "GSM124779" ], "type": "age", "id": "GDS2702_4" }, { "dataset_id": "GDS2702", "description": "E18.5", "sample_id": [ "GSM124780", "GSM124781" ], "type": "age", "id": "GDS2702_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2702", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2702.tab", "compression": "gz" } ], [ [ "GDS2703.tab" ], { "title": "Transcription factor Klf9 deficiency effect on the intestine", "description": "Analysis of jejuna of Kr\u00fcppel-like factor 9 (Klf9) null mutants. Klf9, a zinc-finger transcription factor, is involved in the control of cell proliferation, cell differentiation and cell fate. Results provide insight into role of Klf9 in intestine crypt-villus cell renewal and lineage determination", "type": "Expression profiling by array", "pubmed_id": "17379758", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6443", "order": "none", "update_date": "Aug 21 2007", "subsets": [ { "dataset_id": "GDS2703", "description": "wild type", "sample_id": [ "GSM148140", "GSM148141", "GSM148142", "GSM148143", "GSM148144" ], "type": "genotype/variation", "id": "GDS2703_1" }, { "dataset_id": "GDS2703", "description": "Klf9 null", "sample_id": [ "GSM148135", "GSM148136", "GSM148137", "GSM148138", "GSM148139" ], "type": "genotype/variation", "id": "GDS2703_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2703", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2703.tab", "compression": "gz" } ], [ [ "GDS2704.tab" ], { "title": "Transcription factor CHF1/Hey2 null smooth muscle cell response to platelet-derived growth factor: time course", "description": "Analysis of CHF1/Hey2 null aortic smooth muscle cells treated for up to 480 minutes with platelet-derived growth factor (PDGF). CHF1/Hey2 is a cardiovascular transcription factor. Results provide insight into the mechanisms regulated by CHF1/Hey2 in the response of smooth muscles to growth factors.", "type": "Expression profiling by array", "pubmed_id": "17327490", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE6526", "order": "none", "update_date": "Aug 21 2007", "subsets": [ { "dataset_id": "GDS2704", "description": "wild type", "sample_id": [ "GSM150251", "GSM150253", "GSM150256", "GSM150258", "GSM150252", "GSM150254", "GSM150255", "GSM150257" ], "type": "genotype/variation", "id": "GDS2704_1" }, { "dataset_id": "GDS2704", "description": "CHF1/Hey2 null", "sample_id": [ "GSM150243", "GSM150245", "GSM150248", "GSM150250", "GSM150244", "GSM150246", "GSM150247", "GSM150249" ], "type": "genotype/variation", "id": "GDS2704_2" }, { "dataset_id": "GDS2704", "description": "untreated", "sample_id": [ "GSM150243", "GSM150251" ], "type": "agent", "id": "GDS2704_3" }, { "dataset_id": "GDS2704", "description": "PDGF", "sample_id": [ "GSM150245", "GSM150248", "GSM150250", "GSM150244", "GSM150246", "GSM150247", "GSM150249", "GSM150253", "GSM150256", "GSM150258", "GSM150252", "GSM150254", "GSM150255", "GSM150257" ], "type": "agent", "id": "GDS2704_4" }, { "dataset_id": "GDS2704", "description": "0 min", "sample_id": [ "GSM150243", "GSM150251" ], "type": "time", "id": "GDS2704_5" }, { "dataset_id": "GDS2704", "description": "15 min", "sample_id": [ "GSM150245", "GSM150253" ], "type": "time", "id": "GDS2704_6" }, { "dataset_id": "GDS2704", "description": "30 min", "sample_id": [ "GSM150248", "GSM150256" ], "type": "time", "id": "GDS2704_7" }, { "dataset_id": "GDS2704", "description": "60 min", "sample_id": [ "GSM150250", "GSM150258" ], "type": "time", "id": "GDS2704_8" }, { "dataset_id": "GDS2704", "description": "120 min", "sample_id": [ "GSM150244", "GSM150252" ], "type": "time", "id": "GDS2704_9" }, { "dataset_id": "GDS2704", "description": "180 min", "sample_id": [ "GSM150246", "GSM150254" ], "type": "time", "id": "GDS2704_10" }, { "dataset_id": "GDS2704", "description": "240 min", "sample_id": [ "GSM150247", "GSM150255" ], "type": "time", "id": "GDS2704_11" }, { "dataset_id": "GDS2704", "description": "480 min", "sample_id": [ "GSM150249", "GSM150257" ], "type": "time", "id": "GDS2704_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2704", "version": 1.0, "instances": "16", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2704.tab", "compression": "gz" } ], [ [ "GDS2705.tab" ], { "title": "PPARgamma agonist and platinum-based drug effect on adenocarcinoma cell line", "description": "Analysis of NSCLC adenocarcinoma cells treated with rosiglitazone, carboplatin, or both. Rosiglitazone is an agonist of the nuclear receptor PPARgamma. Results provide insight into the molecular basis of the synergy observed between rosiglitazone and platinum-based drugs in cancer models.", "type": "Expression profiling by array", "pubmed_id": "17482130", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7035", "order": "none", "update_date": "May 08 2007", "subsets": [ { "dataset_id": "GDS2705", "description": "control", "sample_id": [ "GSM162889", "GSM162890" ], "type": "agent", "id": "GDS2705_1" }, { "dataset_id": "GDS2705", "description": "rosiglitazone", "sample_id": [ "GSM162891", "GSM162892" ], "type": "agent", "id": "GDS2705_2" }, { "dataset_id": "GDS2705", "description": "carboplatin", "sample_id": [ "GSM162893", "GSM162894" ], "type": "agent", "id": "GDS2705_3" }, { "dataset_id": "GDS2705", "description": "rosiglitazone plus carboplatin", "sample_id": [ "GSM162895", "GSM162896" ], "type": "agent", "id": "GDS2705_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2705", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2705.tab", "compression": "gz" } ], [ [ "GDS2706.tab" ], { "title": "Philadelphia chromosome positive acute lymphoblastic leukemia cell lines response to imatinib mesylate", "description": "Analysis of Philadelphia chromosome (Ph) positive acute lymphoblastic leukemia cell lines BV173 and SUP-B15 treated with the anticancer drug imatinib mesylate (STI571). Ph encodes the oncogenic BCR-ABL1 kinase. Results provide insight into molecular basis of the transforming activity of BCR-ABL1.", "type": "Expression profiling by array", "pubmed_id": "17485517", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7182", "order": "none", "update_date": "Aug 21 2007", "subsets": [ { "dataset_id": "GDS2706", "description": "BV-173", "sample_id": [ "GSM172883", "GSM172884" ], "type": "cell line", "id": "GDS2706_1" }, { "dataset_id": "GDS2706", "description": "SUP-B15", "sample_id": [ "GSM172885", "GSM172886" ], "type": "cell line", "id": "GDS2706_2" }, { "dataset_id": "GDS2706", "description": "control", "sample_id": [ "GSM172883", "GSM172885" ], "type": "agent", "id": "GDS2706_3" }, { "dataset_id": "GDS2706", "description": "imatinib mesylate", "sample_id": [ "GSM172884", "GSM172886" ], "type": "agent", "id": "GDS2706_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2706", "version": 1.0, "instances": "4", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2706.tab", "compression": "gz" } ], [ [ "GDS2707.tab" ], { "title": "Neuralized embryoid bodies response to Hedgehog agonist", "description": "Analysis of neuralized embryoid bodies (EBs) treated with a Hedgehog (Hh) agonist. EBs neuralized with retinoic acid. Hh signaling is mediated by Ci/Gli zinc finger domain-containing transcription regulators. Results used to identify gene targets of Gli.", "type": "Expression profiling by array", "pubmed_id": "17442700", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE4936", "order": "none", "update_date": "May 09 2007", "subsets": [ { "dataset_id": "GDS2707", "description": "control", "sample_id": [ "GSM111166", "GSM111168", "GSM111170", "GSM111171" ], "type": "agent", "id": "GDS2707_1" }, { "dataset_id": "GDS2707", "description": "Hh agonist", "sample_id": [ "GSM111252", "GSM111253", "GSM111254", "GSM111255" ], "type": "agent", "id": "GDS2707_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2707", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2707.tab", "compression": "gz" } ], [ [ "GDS2708.tab" ], { "title": "Quercetin effect on cultured cardiomyocytes: time course", "description": "Analysis of cultured cardiomyocytes treated for up to 24 hours with the flavonoid quercetin. Consumption of food rich in quercetin is correlated with a decreased incidence of heart disease. Results provide insight into the molecular mechanisms underlying the cardioprotective effects of quercetin.", "type": "Expression profiling by array", "pubmed_id": "18178720", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE7222", "order": "ordered", "update_date": "Aug 22 2007", "subsets": [ { "dataset_id": "GDS2708", "description": "6 h", "sample_id": [ "GSM173578", "GSM173579" ], "type": "time", "id": "GDS2708_1" }, { "dataset_id": "GDS2708", "description": "12 h", "sample_id": [ "GSM173583", "GSM173587" ], "type": "time", "id": "GDS2708_2" }, { "dataset_id": "GDS2708", "description": "24 h", "sample_id": [ "GSM173658", "GSM173659" ], "type": "time", "id": "GDS2708_3" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2708", "version": 1.0, "instances": "6", "variables": 17252, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2708.tab", "compression": "gz" } ], [ [ "GDS2709.tab" ], { "title": "Ventilator-associated lung induced injury resistant and sensitive strains", "description": "Analysis of lungs from 2 strains exposed to high tidal volume mechanical ventilation. Examined strains consist of one that is resistant to ventilator-associated lung injury (VALI) and another that is sensitive. Results provide insight into the genetic basis of susceptibility to VALI.", "type": "Expression profiling by array", "pubmed_id": "17468131", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7041", "order": "none", "update_date": "Jul 13 2007", "subsets": [ { "dataset_id": "GDS2709", "description": "VALI resistant", "sample_id": [ "GSM162914", "GSM162915", "GSM162916", "GSM162920", "GSM162921", "GSM162922" ], "type": "strain", "id": "GDS2709_1" }, { "dataset_id": "GDS2709", "description": "VALI sensitive", "sample_id": [ "GSM162917", "GSM162918", "GSM162919", "GSM162923", "GSM162924", "GSM162925" ], "type": "strain", "id": "GDS2709_2" }, { "dataset_id": "GDS2709", "description": "control", "sample_id": [ "GSM162914", "GSM162915", "GSM162916", "GSM162917", "GSM162918", "GSM162919" ], "type": "protocol", "id": "GDS2709_3" }, { "dataset_id": "GDS2709", "description": "high tidal volume ventilation", "sample_id": [ "GSM162920", "GSM162921", "GSM162922", "GSM162923", "GSM162924", "GSM162925" ], "type": "protocol", "id": "GDS2709_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2709", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2709.tab", "compression": "gz" } ], [ [ "GDS2710.tab" ], { "title": "Salt-sensitive hypertension model: kidney", "description": "Analysis of kidneys from Dahl salt-sensitive males fed a high salt diet. The Dahl salt sensitive animal is used as a model of hypertension. Results combined with quantitative trait loci analyses to identify candidate genes that influence blood pressure levels.", "type": "Expression profiling by array", "pubmed_id": "17460389", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4800", "order": "none", "update_date": "May 10 2007", "subsets": [ { "dataset_id": "GDS2710", "description": "control", "sample_id": [ "GSM108325", "GSM108326", "GSM108327" ], "type": "strain", "id": "GDS2710_1" }, { "dataset_id": "GDS2710", "description": "Dahl", "sample_id": [ "GSM108328", "GSM108329", "GSM108330" ], "type": "strain", "id": "GDS2710_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2710", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2710.tab", "compression": "gz" } ], [ [ "GDS2712.tab" ], { "title": "Yeast response to dessication and subsequent rehydration (I)", "description": "Analysis of Saccharomyces cerevisiae BY4743 cells subjected to controlled air-drying and subsequent rehydration for up to 360 minutes. Results provide insight into the molecular response of yeast to water deficit.", "type": "Expression profiling by array", "pubmed_id": "16332871", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1311", "order": "none", "update_date": "May 10 2007", "subsets": [ { "dataset_id": "GDS2712", "description": "control", "sample_id": [ "GSM21640", "GSM21641", "GSM21642" ], "type": "protocol", "id": "GDS2712_1" }, { "dataset_id": "GDS2712", "description": "dessication", "sample_id": [ "GSM21643", "GSM21644", "GSM21645", "GSM21646", "GSM21647", "GSM21648" ], "type": "protocol", "id": "GDS2712_2" }, { "dataset_id": "GDS2712", "description": "rehydration", "sample_id": [ "GSM21649", "GSM21650", "GSM21651", "GSM21652", "GSM21653", "GSM21654", "GSM21655", "GSM21656", "GSM21657", "GSM21658", "GSM21659", "GSM21660" ], "type": "protocol", "id": "GDS2712_3" }, { "dataset_id": "GDS2712", "description": "control", "sample_id": [ "GSM21640", "GSM21641", "GSM21642" ], "type": "other", "id": "GDS2712_4" }, { "dataset_id": "GDS2712", "description": "50 pct dry", "sample_id": [ "GSM21643", "GSM21644", "GSM21645" ], "type": "other", "id": "GDS2712_5" }, { "dataset_id": "GDS2712", "description": "dry", "sample_id": [ "GSM21646", "GSM21647", "GSM21648" ], "type": "other", "id": "GDS2712_6" }, { "dataset_id": "GDS2712", "description": "15 min rehydration", "sample_id": [ "GSM21649", "GSM21650", "GSM21651" ], "type": "other", "id": "GDS2712_7" }, { "dataset_id": "GDS2712", "description": "45 min rehydration", "sample_id": [ "GSM21652", "GSM21653", "GSM21654" ], "type": "other", "id": "GDS2712_8" }, { "dataset_id": "GDS2712", "description": "90 min rehydration", "sample_id": [ "GSM21655", "GSM21656", "GSM21657" ], "type": "other", "id": "GDS2712_9" }, { "dataset_id": "GDS2712", "description": "360 min rehydration", "sample_id": [ "GSM21658", "GSM21659", "GSM21660" ], "type": "other", "id": "GDS2712_10" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2712", "version": 1.0, "instances": "21", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2712.tab", "compression": "gz" } ], [ [ "GDS2713.tab" ], { "title": "Yeast response to dessication and subsequent rehydration (II)", "description": "Analysis of Saccharomyces cerevisiae BY4743 cells subjected to controlled air-drying and subsequent rehydration for up to 360 minutes. Results provide insight into the molecular response of yeast to water deficit.", "type": "Expression profiling by array", "pubmed_id": "16332871", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1312", "order": "none", "update_date": "May 10 2007", "subsets": [ { "dataset_id": "GDS2713", "description": "control", "sample_id": [ "GSM21661", "GSM21662", "GSM21663" ], "type": "protocol", "id": "GDS2713_1" }, { "dataset_id": "GDS2713", "description": "dessication", "sample_id": [ "GSM21664", "GSM21665", "GSM21666", "GSM21667", "GSM21668", "GSM21669" ], "type": "protocol", "id": "GDS2713_2" }, { "dataset_id": "GDS2713", "description": "rehydration", "sample_id": [ "GSM21670", "GSM21671", "GSM21672", "GSM21673", "GSM21674", "GSM21675", "GSM21676", "GSM21677", "GSM21678", "GSM21679", "GSM21680", "GSM21681" ], "type": "protocol", "id": "GDS2713_3" }, { "dataset_id": "GDS2713", "description": "control", "sample_id": [ "GSM21661", "GSM21662", "GSM21663" ], "type": "other", "id": "GDS2713_4" }, { "dataset_id": "GDS2713", "description": "50 pct dry", "sample_id": [ "GSM21664", "GSM21665", "GSM21666" ], "type": "other", "id": "GDS2713_5" }, { "dataset_id": "GDS2713", "description": "dry", "sample_id": [ "GSM21667", "GSM21668", "GSM21669" ], "type": "other", "id": "GDS2713_6" }, { "dataset_id": "GDS2713", "description": "15 min rehydration", "sample_id": [ "GSM21670", "GSM21671", "GSM21672" ], "type": "other", "id": "GDS2713_7" }, { "dataset_id": "GDS2713", "description": "45 min rehydration", "sample_id": [ "GSM21673", "GSM21674", "GSM21675" ], "type": "other", "id": "GDS2713_8" }, { "dataset_id": "GDS2713", "description": "90 min rehydration", "sample_id": [ "GSM21676", "GSM21677", "GSM21678" ], "type": "other", "id": "GDS2713_9" }, { "dataset_id": "GDS2713", "description": "360 min rehydration", "sample_id": [ "GSM21679", "GSM21680", "GSM21681" ], "type": "other", "id": "GDS2713_10" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2713", "version": 1.0, "instances": "21", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2713.tab", "compression": "gz" } ], [ [ "GDS2715.tab" ], { "title": "Yeast response to dessication and subsequent rehydration (III)", "description": "Analysis of Saccharomyces cerevisiae BY4743 cells subjected to controlled air-drying and subsequent rehydration for up to 360 minutes. Results provide insight into the molecular response of yeast to water deficit.", "type": "Expression profiling by array", "pubmed_id": "16332871", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1313", "order": "none", "update_date": "May 10 2007", "subsets": [ { "dataset_id": "GDS2715", "description": "control", "sample_id": [ "GSM21682", "GSM21683", "GSM21684" ], "type": "protocol", "id": "GDS2715_1" }, { "dataset_id": "GDS2715", "description": "dessication", "sample_id": [ "GSM21685", "GSM21686", "GSM21687", "GSM21688", "GSM21689", "GSM21690" ], "type": "protocol", "id": "GDS2715_2" }, { "dataset_id": "GDS2715", "description": "rehydration", "sample_id": [ "GSM21691", "GSM21692", "GSM21693", "GSM21694", "GSM21695", "GSM21696", "GSM21697", "GSM21698", "GSM21699", "GSM21700", "GSM21701", "GSM21702" ], "type": "protocol", "id": "GDS2715_3" }, { "dataset_id": "GDS2715", "description": "control", "sample_id": [ "GSM21682", "GSM21683", "GSM21684" ], "type": "other", "id": "GDS2715_4" }, { "dataset_id": "GDS2715", "description": "50 pct dry", "sample_id": [ "GSM21685", "GSM21686", "GSM21687" ], "type": "other", "id": "GDS2715_5" }, { "dataset_id": "GDS2715", "description": "dry", "sample_id": [ "GSM21688", "GSM21689", "GSM21690" ], "type": "other", "id": "GDS2715_6" }, { "dataset_id": "GDS2715", "description": "15 min rehydration", "sample_id": [ "GSM21691", "GSM21692", "GSM21693" ], "type": "other", "id": "GDS2715_7" }, { "dataset_id": "GDS2715", "description": "45 min rehydration", "sample_id": [ "GSM21694", "GSM21695", "GSM21696" ], "type": "other", "id": "GDS2715_8" }, { "dataset_id": "GDS2715", "description": "90 min rehydration", "sample_id": [ "GSM21697", "GSM21698", "GSM21699" ], "type": "other", "id": "GDS2715_9" }, { "dataset_id": "GDS2715", "description": "360 min rehydration", "sample_id": [ "GSM21700", "GSM21701", "GSM21702" ], "type": "other", "id": "GDS2715_10" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2715", "version": 1.0, "instances": "21", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2715.tab", "compression": "gz" } ], [ [ "GDS2716.tab" ], { "title": "Commercially prepared dry active yeast and dessicated laboratory yeast", "description": "Comparison of commercially prepared dry active yeast and desiccated preparations of the Saccharomyces cerevisiae laboratory strain BY4743. The yeast specimens were dried by different regimens. Results provide insight into the molecular response of yeast to water removal.", "type": "Expression profiling by array", "pubmed_id": "16332871", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1314", "order": "none", "update_date": "Aug 03 2007", "subsets": [ { "dataset_id": "GDS2716", "description": "laboratory", "sample_id": [ "GSM21682", "GSM21683", "GSM21684", "GSM21688", "GSM21689", "GSM21690" ], "type": "specimen", "id": "GDS2716_1" }, { "dataset_id": "GDS2716", "description": "commercial", "sample_id": [ "GSM21703", "GSM21704", "GSM21705" ], "type": "specimen", "id": "GDS2716_2" }, { "dataset_id": "GDS2716", "description": "control", "sample_id": [ "GSM21682", "GSM21683", "GSM21684" ], "type": "stress", "id": "GDS2716_3" }, { "dataset_id": "GDS2716", "description": "dessicated", "sample_id": [ "GSM21688", "GSM21689", "GSM21690", "GSM21703", "GSM21704", "GSM21705" ], "type": "stress", "id": "GDS2716_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2716", "version": 1.0, "instances": "9", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2716.tab", "compression": "gz" } ], [ [ "GDS2717.tab" ], { "title": "Polycomb group protein Ezh2 deficiency effect on lymph node T cells", "description": "Analysis of lymph node T cells lacking the polycomb group protein Ezh2. In B cells, Ezh2 is localized to the nucleus and is essential in histone H3 lysine 27 methylation. T lymphocytes also contain cytosolic Ezh2. Results provide insight into the function of Ezh2 in the T cell cytosol.", "type": "Expression profiling by array", "pubmed_id": "15882624", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1566", "order": "none", "update_date": "Aug 03 2007", "subsets": [ { "dataset_id": "GDS2717", "description": "control", "sample_id": [ "GSM26964", "GSM26965", "GSM26966" ], "type": "genotype/variation", "id": "GDS2717_1" }, { "dataset_id": "GDS2717", "description": "Ezh2 deficient", "sample_id": [ "GSM26967", "GSM26968", "GSM26969" ], "type": "genotype/variation", "id": "GDS2717_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2717", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2717.tab", "compression": "gz" } ], [ [ "GDS2718.tab" ], { "title": "Transcription factor Zfx deficiency effect on embryonic and hematopoietic stem cells", "description": "Analysis of embryonic and hematopoietic stem cells (SCs) lacking the transcription factor Zfx. Zfx is a zinc finger protein of the Zfy family, whose members are highly conserved in vertebrates. Results provide insight into the role of Zfx in embryonic and adult SC self-renewal.", "type": "Expression profiling by array", "pubmed_id": "17448993", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7069", "order": "none", "update_date": "May 15 2007", "subsets": [ { "dataset_id": "GDS2718", "description": "embryonic stem cell", "sample_id": [ "GSM169455", "GSM169456", "GSM169459", "GSM169460" ], "type": "cell type", "id": "GDS2718_1" }, { "dataset_id": "GDS2718", "description": "hematopoietic stem cell", "sample_id": [ "GSM169463", "GSM169464", "GSM169465", "GSM169466" ], "type": "cell type", "id": "GDS2718_2" }, { "dataset_id": "GDS2718", "description": "control", "sample_id": [ "GSM169455", "GSM169456", "GSM169465", "GSM169466" ], "type": "genotype/variation", "id": "GDS2718_3" }, { "dataset_id": "GDS2718", "description": "Zfx null", "sample_id": [ "GSM169459", "GSM169460", "GSM169463", "GSM169464" ], "type": "genotype/variation", "id": "GDS2718_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2718", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2718.tab", "compression": "gz" } ], [ [ "GDS2719.tab" ], { "title": "Embryonic gonad development", "description": "Analysis of male and female gonads at 11.5 to 18.5 days postcoitum (dpc). Results provide insight into the molecular mechanisms underlying the functional and structural changes in the developing male and female embryonic gonads.", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE6916", "order": "none", "update_date": "May 15 2007", "subsets": [ { "dataset_id": "GDS2719", "description": "male", "sample_id": [ "GSM158596", "GSM158599", "GSM158602", "GSM158604", "GSM158606", "GSM158607", "GSM158608", "GSM158609", "GSM158610", "GSM158611" ], "type": "gender", "id": "GDS2719_1" }, { "dataset_id": "GDS2719", "description": "female", "sample_id": [ "GSM158616", "GSM158618", "GSM158620", "GSM158621", "GSM158622", "GSM158624", "GSM158625", "GSM158626", "GSM158628", "GSM158630" ], "type": "gender", "id": "GDS2719_2" }, { "dataset_id": "GDS2719", "description": "11.5 dpc", "sample_id": [ "GSM158596", "GSM158599", "GSM158616", "GSM158618" ], "type": "time", "id": "GDS2719_3" }, { "dataset_id": "GDS2719", "description": "12.5 dpc", "sample_id": [ "GSM158602", "GSM158604", "GSM158620", "GSM158621" ], "type": "time", "id": "GDS2719_4" }, { "dataset_id": "GDS2719", "description": "14.5 dpc", "sample_id": [ "GSM158606", "GSM158607", "GSM158622", "GSM158624" ], "type": "time", "id": "GDS2719_5" }, { "dataset_id": "GDS2719", "description": "16.5 dpc", "sample_id": [ "GSM158608", "GSM158609", "GSM158625", "GSM158626" ], "type": "time", "id": "GDS2719_6" }, { "dataset_id": "GDS2719", "description": "18.5 dpc", "sample_id": [ "GSM158610", "GSM158611", "GSM158628", "GSM158630" ], "type": "time", "id": "GDS2719_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2719", "version": 1.0, "instances": "20", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2719.tab", "compression": "gz" } ], [ [ "GDS272.tab" ], { "title": "Hypoxia and glucose metabolism", "description": "Analysis of the relationship between intermittent hypoxia (similar to what occurs with sleep apnea) and improvements in glucose tolerance.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE480", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS272", "description": "no glucose", "sample_id": [ "GSM4100", "GSM4101", "GSM29575", "GSM47955" ], "type": "agent", "id": "GDS272_1" }, { "dataset_id": "GDS272", "description": "glucose", "sample_id": [ "GSM4105", "GSM4106", "GSM4107", "GSM4108" ], "type": "agent", "id": "GDS272_2" }, { "dataset_id": "GDS272", "description": "normal", "sample_id": [ "GSM4100", "GSM4101", "GSM4107", "GSM4108" ], "type": "protocol", "id": "GDS272_3" }, { "dataset_id": "GDS272", "description": "hypoxia", "sample_id": [ "GSM4105", "GSM4106", "GSM29575", "GSM47955" ], "type": "protocol", "id": "GDS272_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS272", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS272.tab", "compression": "gz" } ], [ [ "GDS2720.tab" ], { "title": "Forkhead O deficiency effect on hematopoietic stem cells", "description": "Analysis of lineage-negative Sca-1+, c-Kit+ (LSK) cells lacking the Forkhead O transcription factors FoxO1, FoxO3, and FoxO4. The LSK cell population is enriched for hematopoietic stem cells (HSCs). Results provide insight into the role of FoxO family members in hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "17254970", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6623", "order": "none", "update_date": "May 15 2007", "subsets": [ { "dataset_id": "GDS2720", "description": "wild type", "sample_id": [ "GSM153707", "GSM153709", "GSM153710", "GSM153717", "GSM153718", "GSM153719" ], "type": "genotype/variation", "id": "GDS2720_1" }, { "dataset_id": "GDS2720", "description": "FoxO deficient", "sample_id": [ "GSM153712", "GSM153714", "GSM153716", "GSM153720", "GSM153721", "GSM153722" ], "type": "genotype/variation", "id": "GDS2720_2" }, { "dataset_id": "GDS2720", "description": "myeloid progenitor", "sample_id": [ "GSM153717", "GSM153718", "GSM153719", "GSM153720", "GSM153721", "GSM153722" ], "type": "cell type", "id": "GDS2720_3" }, { "dataset_id": "GDS2720", "description": "LSK", "sample_id": [ "GSM153707", "GSM153709", "GSM153710", "GSM153712", "GSM153714", "GSM153716" ], "type": "cell type", "id": "GDS2720_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2720", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2720.tab", "compression": "gz" } ], [ [ "GDS2721.tab" ], { "title": "Pubertal mammary gland development", "description": "Analysis of mammary glands of animals from pre-puberty to post-puberty. Results provide insight into the mechanisms underlying mammary gland development during puberty.", "type": "Expression profiling by array", "pubmed_id": "17486082", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE6453", "order": "none", "update_date": "May 16 2007", "subsets": [ { "dataset_id": "GDS2721", "description": "3 wk", "sample_id": [ "GSM148464", "GSM148465", "GSM148466" ], "type": "age", "id": "GDS2721_1" }, { "dataset_id": "GDS2721", "description": "4 wk", "sample_id": [ "GSM148467", "GSM148468", "GSM148469" ], "type": "age", "id": "GDS2721_2" }, { "dataset_id": "GDS2721", "description": "5 wk", "sample_id": [ "GSM148470", "GSM148471" ], "type": "age", "id": "GDS2721_3" }, { "dataset_id": "GDS2721", "description": "6 wk", "sample_id": [ "GSM148472", "GSM148473", "GSM148474" ], "type": "age", "id": "GDS2721_4" }, { "dataset_id": "GDS2721", "description": "7 wk", "sample_id": [ "GSM148475", "GSM148476", "GSM148477" ], "type": "age", "id": "GDS2721_5" }, { "dataset_id": "GDS2721", "description": "pre-puberty", "sample_id": [ "GSM148464", "GSM148465", "GSM148466" ], "type": "development stage", "id": "GDS2721_6" }, { "dataset_id": "GDS2721", "description": "puberty", "sample_id": [ "GSM148467", "GSM148468", "GSM148469", "GSM148470", "GSM148471", "GSM148472", "GSM148473", "GSM148474" ], "type": "development stage", "id": "GDS2721_7" }, { "dataset_id": "GDS2721", "description": "post-puberty", "sample_id": [ "GSM148475", "GSM148476", "GSM148477" ], "type": "development stage", "id": "GDS2721_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2721", "version": 1.0, "instances": "14", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2721.tab", "compression": "gz" } ], [ [ "GDS2723.tab" ], { "title": "Primary immunodeficiency syndrome: B cells", "description": "Analysis of immortalized B cells from 2 children with a primary immunodeficiency syndrome that is characterized by neutropenia, partial albinism, short stature, and B-cell and cytotoxic T-cell deficiencies. Results provide insight into the genetic basis of this syndrome.", "type": "Expression profiling by array", "pubmed_id": "17195838", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6322", "order": "none", "update_date": "May 16 2007", "subsets": [ { "dataset_id": "GDS2723", "description": "mother", "sample_id": [ "GSM146339" ], "type": "individual", "id": "GDS2723_1" }, { "dataset_id": "GDS2723", "description": "father", "sample_id": [ "GSM146337" ], "type": "individual", "id": "GDS2723_2" }, { "dataset_id": "GDS2723", "description": "child 12", "sample_id": [ "GSM146336" ], "type": "individual", "id": "GDS2723_3" }, { "dataset_id": "GDS2723", "description": "child 13", "sample_id": [ "GSM146338" ], "type": "individual", "id": "GDS2723_4" }, { "dataset_id": "GDS2723", "description": "healthy", "sample_id": [ "GSM146337", "GSM146339" ], "type": "disease state", "id": "GDS2723_5" }, { "dataset_id": "GDS2723", "description": "primary immunodeficiency syndrome", "sample_id": [ "GSM146336", "GSM146338" ], "type": "disease state", "id": "GDS2723_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2723", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2723.tab", "compression": "gz" } ], [ [ "GDS2724.tab" ], { "title": "Transcriptional regulators Bmi-1 and Mel-18 depletion effect on medulloblastoma cell line", "description": "Analysis of DAOY medulloblastoma cells following RNAi knockdown of Bmi-1, Mel-18, or both. Bmi-1 and Mel-18 belong to the Polycomb group (PcG) of transcriptional regulators. Results provide insight into the role of Bmi-1 and Mel-18 in the pathogenesis of medulloblastoma.", "type": "Expression profiling by array", "pubmed_id": "17452456", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE7578", "order": "none", "update_date": "Aug 22 2007", "subsets": [ { "dataset_id": "GDS2724", "description": "control", "sample_id": [ "GSM182018", "GSM182019", "GSM182020" ], "type": "protocol", "id": "GDS2724_1" }, { "dataset_id": "GDS2724", "description": "Alk knockdown", "sample_id": [ "GSM182015", "GSM182016", "GSM182017" ], "type": "protocol", "id": "GDS2724_2" }, { "dataset_id": "GDS2724", "description": "Bmi-1 knockdown", "sample_id": [ "GSM182006", "GSM182007", "GSM182008" ], "type": "protocol", "id": "GDS2724_3" }, { "dataset_id": "GDS2724", "description": "Mel-18 knockdown", "sample_id": [ "GSM182009", "GSM182010", "GSM182011" ], "type": "protocol", "id": "GDS2724_4" }, { "dataset_id": "GDS2724", "description": "Bmi-1 Mel-18 knockdown", "sample_id": [ "GSM182012", "GSM182013", "GSM182014" ], "type": "protocol", "id": "GDS2724_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2724", "version": 1.0, "instances": "15", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2724.tab", "compression": "gz" } ], [ [ "GDS2725.tab" ], { "title": "Conditionally immortalized astrocyte cell line response to T-antigen inactivation", "description": "Analysis of conditionally immortalized astrocyte RCG-12 cells induced to undergo growth arrest and differentiation by heat inactivation of a temperature-sensitive large T-antigen. Results provide insight into the molecular mechanisms underlying cell growth arrest and differentiation.", "type": "Expression profiling by array", "pubmed_id": "17440958", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7501", "order": "none", "update_date": "Aug 22 2007", "subsets": [ { "dataset_id": "GDS2725", "description": "contol", "sample_id": [ "GSM181825", "GSM181826" ], "type": "protocol", "id": "GDS2725_1" }, { "dataset_id": "GDS2725", "description": "T-antigen inactivation", "sample_id": [ "GSM181827", "GSM181828" ], "type": "protocol", "id": "GDS2725_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2725", "version": 1.0, "instances": "4", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2725.tab", "compression": "gz" } ], [ [ "GDS2727.tab" ], { "title": "Estrogen-related receptor alpha deficiency effect on the heart", "description": "Analysis of hearts from mutants lacking estrogen-related receptor alpha (ERRalpha), a nuclear receptor. ERRalpha is a regulator of mitochondrial biogenesis. Results provide insight into the role of ERRalpha in the heart.", "type": "Expression profiling by array", "pubmed_id": "17488637", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7196", "order": "none", "update_date": "Aug 22 2007", "subsets": [ { "dataset_id": "GDS2727", "description": "wild type", "sample_id": [ "GSM173005", "GSM173006", "GSM173007" ], "type": "genotype/variation", "id": "GDS2727_1" }, { "dataset_id": "GDS2727", "description": "ERRalpha null mutant", "sample_id": [ "GSM173008", "GSM173009", "GSM173010" ], "type": "genotype/variation", "id": "GDS2727_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2727", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2727.tab", "compression": "gz" } ], [ [ "GDS2728.tab" ], { "title": "CD133+ and CD133- glioblastoma-derived cancer stem cell lines", "description": "Comparison of CD133+ and CD133- glioblastoma-derived cancer stem cells (CSC). Both CSC subpopulations were derived from primary glioblastomas. Results provide insight into the role of CD133+ and CD133- CSCs in the pathogenesis of glioblastoma.", "type": "Expression profiling by array", "pubmed_id": "17483311", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7181", "order": "none", "update_date": "May 22 2007", "subsets": [ { "dataset_id": "GDS2728", "description": "CD133 minus", "sample_id": [ "GSM170898", "GSM172066", "GSM172067" ], "type": "cell line", "id": "GDS2728_1" }, { "dataset_id": "GDS2728", "description": "CD133 plus", "sample_id": [ "GSM172063", "GSM172064", "GSM172065" ], "type": "cell line", "id": "GDS2728_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2728", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2728.tab", "compression": "gz" } ], [ [ "GDS2729.tab" ], { "title": "Cyclophosphamide-resistant chronic myelogenous leukemia cell line", "description": "Analysis of chronic myelogenous leukemia (CML) cells resistant to cyclophosphamide (CP), an alkylating anticancer drug. Results provide insight into the molecular basis of CP resistance in CML.", "type": "Expression profiling by array", "pubmed_id": "17403535", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7114", "order": "none", "update_date": "Sep 06 2007", "subsets": [ { "dataset_id": "GDS2729", "description": "sensitive", "sample_id": [ "GSM170886", "GSM170887", "GSM170888", "GSM170889", "GSM170890" ], "type": "cell line", "id": "GDS2729_1" }, { "dataset_id": "GDS2729", "description": "resistant", "sample_id": [ "GSM170891", "GSM170892", "GSM170893", "GSM170894", "GSM170895" ], "type": "cell line", "id": "GDS2729_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2729", "version": 1.0, "instances": "10", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2729.tab", "compression": "gz" } ], [ [ "GDS2730.tab" ], { "title": "mRNA cap-binding protein ABH1 mutant response to abscisic acid", "description": "Analysis of abh1 mutants treated with abscisic acid (ABA). ABH1 encodes a nuclear mRNA cap-binding protein homolog. The abh1 mutant is hypersensitive to ABA, a plant hormone that regulates development and abiotic stress responses. Results provide insight into the role of ABH1 in ABA signaling.", "type": "Expression profiling by array", "pubmed_id": "18630751", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7112", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2730", "description": "wild type", "sample_id": [ "GSM170896", "GSM170897", "GSM170923", "GSM170931" ], "type": "genotype/variation", "id": "GDS2730_1" }, { "dataset_id": "GDS2730", "description": "abh1 mutant", "sample_id": [ "GSM170899", "GSM170911", "GSM170930", "GSM170940" ], "type": "genotype/variation", "id": "GDS2730_2" }, { "dataset_id": "GDS2730", "description": "untreated", "sample_id": [ "GSM170896", "GSM170899", "GSM170923", "GSM170930" ], "type": "agent", "id": "GDS2730_3" }, { "dataset_id": "GDS2730", "description": "abscisic acid", "sample_id": [ "GSM170897", "GSM170911", "GSM170931", "GSM170940" ], "type": "agent", "id": "GDS2730_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2730", "version": 1.0, "instances": "8", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2730.tab", "compression": "gz" } ], [ [ "GDS2731.tab" ], { "title": "Retinoblastoma binding protein RBP2 deficiency effect on embryonic fibroblasts", "description": "Analysis of embryonic fibroblasts lacking the retinoblastoma binding protein RBP2. RBP2 contains a histone demethylase signature motif, as well as other domains frequently found in transcriptional regulators. Results provide mechanistic insights into transcriptional regulation by RBP2.", "type": "Expression profiling by array", "pubmed_id": "17320163", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6945", "order": "none", "update_date": "Sep 06 2007", "subsets": [ { "dataset_id": "GDS2731", "description": "wild type", "sample_id": [ "GSM160088", "GSM160104" ], "type": "genotype/variation", "id": "GDS2731_1" }, { "dataset_id": "GDS2731", "description": "RBP2 null mutant", "sample_id": [ "GSM160105", "GSM160106" ], "type": "genotype/variation", "id": "GDS2731_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2731", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2731.tab", "compression": "gz" } ], [ [ "GDS2732.tab" ], { "title": "2-(3,4,5-trimethoxyphenylamino)-pyrrolo[2,3-d]pyrimidine effect on epidermal keratinocytes: time course", "description": "Analysis of epidermal keratinocytes at various time points up to 48 hours following treatment with 2-(3,4,5-trimethoxyphenylamino)-pyrrolo[2,3-d]pyrimidine (PP). PP induces the terminal differentiation of epidermal keratinocytes. Results provide insight into the mechanism of action of PP.", "type": "Expression profiling by array", "pubmed_id": "17348628", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE6932", "order": "none", "update_date": "May 23 2007", "subsets": [ { "dataset_id": "GDS2732", "description": "control", "sample_id": [ "GSM159933", "GSM159934", "GSM159935", "GSM159936", "GSM159939", "GSM159940", "GSM159943", "GSM159944", "GSM159947", "GSM159948" ], "type": "agent", "id": "GDS2732_1" }, { "dataset_id": "GDS2732", "description": "PP", "sample_id": [ "GSM159937", "GSM159938", "GSM159941", "GSM159942", "GSM159945", "GSM159946", "GSM159949", "GSM159950" ], "type": "agent", "id": "GDS2732_2" }, { "dataset_id": "GDS2732", "description": "0 h", "sample_id": [ "GSM159933", "GSM159934" ], "type": "time", "id": "GDS2732_3" }, { "dataset_id": "GDS2732", "description": "12 h", "sample_id": [ "GSM159935", "GSM159936", "GSM159937", "GSM159938" ], "type": "time", "id": "GDS2732_4" }, { "dataset_id": "GDS2732", "description": "24 h", "sample_id": [ "GSM159939", "GSM159940", "GSM159941", "GSM159942" ], "type": "time", "id": "GDS2732_5" }, { "dataset_id": "GDS2732", "description": "36 h", "sample_id": [ "GSM159943", "GSM159944", "GSM159945", "GSM159946" ], "type": "time", "id": "GDS2732_6" }, { "dataset_id": "GDS2732", "description": "48 h", "sample_id": [ "GSM159947", "GSM159948", "GSM159949", "GSM159950" ], "type": "time", "id": "GDS2732_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2732", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2732.tab", "compression": "gz" } ], [ [ "GDS2733.tab" ], { "title": "Cytosine arabinoside effect on Ewing's sarcoma cell line: time course and dose response", "description": "Analysis of Ewing\u2019s sarcoma A673 cells for up to 5 days after treatment with cytosine arabinoside (ARA-C) at EC50 or twice the EC50. ARA-C identified as a modulator of the Ewing\u2019s sarcoma EWS/FLI fusion protein. Results provide insight into the specificity of the response of A673 cells to ARA-C.", "type": "Expression profiling by array", "pubmed_id": "17425403", "platform": "GPL4685", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22944", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "68", "value_type": "count", "reference_series": "GSE6930", "order": "none", "update_date": "Sep 06 2007", "subsets": [ { "dataset_id": "GDS2733", "description": "DMSO", "sample_id": [ "GSM159850", "GSM159851", "GSM159852", "GSM159853", "GSM159854", "GSM159855", "GSM159856", "GSM159857", "GSM159858", "GSM159859", "GSM159860", "GSM159861", "GSM159862", "GSM159863", "GSM159864", "GSM159865", "GSM159866" ], "type": "agent", "id": "GDS2733_1" }, { "dataset_id": "GDS2733", "description": "doxorubicin", "sample_id": [ "GSM159885", "GSM159886", "GSM159887", "GSM159888", "GSM159889", "GSM159890", "GSM159891", "GSM159892", "GSM159893", "GSM159894", "GSM159895", "GSM159896", "GSM159897", "GSM159898", "GSM159899", "GSM159900", "GSM159901" ], "type": "agent", "id": "GDS2733_2" }, { "dataset_id": "GDS2733", "description": "puromycin", "sample_id": [ "GSM159902", "GSM159903", "GSM159904", "GSM159905", "GSM159906", "GSM159907", "GSM159908", "GSM159909", "GSM159910", "GSM159911", "GSM159912", "GSM159913", "GSM159914", "GSM159915", "GSM159916", "GSM159917" ], "type": "agent", "id": "GDS2733_3" }, { "dataset_id": "GDS2733", "description": "cytosine arabinoside", "sample_id": [ "GSM159867", "GSM159868", "GSM159869", "GSM159870", "GSM159871", "GSM159872", "GSM159873", "GSM159874", "GSM159875", "GSM159876", "GSM159877", "GSM159878", "GSM159879", "GSM159880", "GSM159881", "GSM159882", "GSM159883", "GSM159884" ], "type": "agent", "id": "GDS2733_4" }, { "dataset_id": "GDS2733", "description": "EC50", "sample_id": [ "GSM159867", "GSM159868", "GSM159869", "GSM159870", "GSM159871", "GSM159872", "GSM159873", "GSM159874", "GSM159875", "GSM159885", "GSM159886", "GSM159887", "GSM159888", "GSM159889", "GSM159890", "GSM159891", "GSM159892", "GSM159893", "GSM159902", "GSM159903", "GSM159904", "GSM159905", "GSM159906", "GSM159907", "GSM159908", "GSM159909", "GSM159910" ], "type": "dose", "id": "GDS2733_5" }, { "dataset_id": "GDS2733", "description": "2x EC50", "sample_id": [ "GSM159876", "GSM159877", "GSM159878", "GSM159879", "GSM159880", "GSM159881", "GSM159882", "GSM159883", "GSM159884", "GSM159894", "GSM159895", "GSM159896", "GSM159897", "GSM159898", "GSM159899", "GSM159900", "GSM159901", "GSM159911", "GSM159912", "GSM159913", "GSM159914", "GSM159915", "GSM159916", "GSM159917" ], "type": "dose", "id": "GDS2733_6" }, { "dataset_id": "GDS2733", "description": "control", "sample_id": [ "GSM159850", "GSM159851", "GSM159852", "GSM159853", "GSM159854", "GSM159855", "GSM159856", "GSM159857", "GSM159858", "GSM159859", "GSM159860", "GSM159861", "GSM159862", "GSM159863", "GSM159864", "GSM159865", "GSM159866" ], "type": "dose", "id": "GDS2733_7" }, { "dataset_id": "GDS2733", "description": "1 d", "sample_id": [ "GSM159850", "GSM159851", "GSM159852", "GSM159853", "GSM159854", "GSM159855", "GSM159867", "GSM159868", "GSM159869", "GSM159876", "GSM159877", "GSM159878", "GSM159885", "GSM159886", "GSM159887", "GSM159894", "GSM159895", "GSM159896", "GSM159902", "GSM159903", "GSM159904", "GSM159911", "GSM159912", "GSM159913" ], "type": "time", "id": "GDS2733_8" }, { "dataset_id": "GDS2733", "description": "3 d", "sample_id": [ "GSM159856", "GSM159857", "GSM159858", "GSM159859", "GSM159860", "GSM159870", "GSM159871", "GSM159872", "GSM159879", "GSM159880", "GSM159881", "GSM159888", "GSM159889", "GSM159890", "GSM159897", "GSM159898", "GSM159899", "GSM159905", "GSM159906", "GSM159907", "GSM159914", "GSM159915", "GSM159916" ], "type": "time", "id": "GDS2733_9" }, { "dataset_id": "GDS2733", "description": "5 d", "sample_id": [ "GSM159861", "GSM159862", "GSM159863", "GSM159864", "GSM159865", "GSM159866", "GSM159873", "GSM159874", "GSM159875", "GSM159882", "GSM159883", "GSM159884", "GSM159891", "GSM159892", "GSM159893", "GSM159900", "GSM159901", "GSM159908", "GSM159909", "GSM159910", "GSM159917" ], "type": "time", "id": "GDS2733_10" } ], "taxid": "9606", "genes": 14378, "aggregation_function": "mean", "name": "GDS2733", "version": 1.0, "instances": "68", "variables": 14382, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2733.tab", "compression": "gz" } ], [ [ "GDS2734.tab" ], { "title": "DNA-associated protein Stonewall deficiency effect on ovaries", "description": "Comparison of ovaries from bag of marbles (bam) mutants and stonewall (stwl) bam double mutants. Stwl is a DNA-associated protein required for germline stem cell (GSC) maintenance; Bam is a key differentiation factor. Results provide insight into the role of Stwl in maintaining germ cell identity.", "type": "Expression profiling by array", "pubmed_id": "17344229", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6928", "order": "none", "update_date": "Sep 07 2007", "subsets": [ { "dataset_id": "GDS2734", "description": "bam mutant", "sample_id": [ "GSM159285", "GSM159286", "GSM159287" ], "type": "genotype/variation", "id": "GDS2734_1" }, { "dataset_id": "GDS2734", "description": "stwl bam double mutant", "sample_id": [ "GSM159288", "GSM159289", "GSM159290" ], "type": "genotype/variation", "id": "GDS2734_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2734", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2734.tab", "compression": "gz" } ], [ [ "GDS2735.tab" ], { "title": "Metastatic melanoma: peripheral blood lymphocytes", "description": "Analysis of sorted peripheral blood lymphocytes (CD8 T cells, CD4 T cells, B cells, NK cells) from patients with melanoma. These subpopulations are involved in antitumor responses and negatively impacted by cancer. Results provide insight into molecular mechanisms of immune dysfunction in cancer.", "type": "Expression profiling by array", "pubmed_id": "17488182", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "46", "value_type": "log2 ratio", "reference_series": "GSE6887", "order": "none", "update_date": "Sep 10 2007", "subsets": [ { "dataset_id": "GDS2735", "description": "healthy", "sample_id": [ "GSM158372", "GSM158512", "GSM158513", "GSM158514", "GSM158515", "GSM158516", "GSM158532", "GSM158533", "GSM158534", "GSM158535", "GSM158536", "GSM158543", "GSM158544", "GSM158545", "GSM158546", "GSM158547", "GSM158548", "GSM158612", "GSM158613", "GSM158615", "GSM158617", "GSM158619", "GSM158623" ], "type": "disease state", "id": "GDS2735_1" }, { "dataset_id": "GDS2735", "description": "melanoma", "sample_id": [ "GSM158524", "GSM158526", "GSM158529", "GSM158530", "GSM158531", "GSM158537", "GSM158538", "GSM158539", "GSM158540", "GSM158541", "GSM158542", "GSM158597", "GSM158598", "GSM158600", "GSM158601", "GSM158603", "GSM158605", "GSM158627", "GSM158629", "GSM158631", "GSM158632", "GSM158633", "GSM158634" ], "type": "disease state", "id": "GDS2735_2" }, { "dataset_id": "GDS2735", "description": "B cell", "sample_id": [ "GSM158372", "GSM158512", "GSM158513", "GSM158514", "GSM158515", "GSM158516", "GSM158524", "GSM158526", "GSM158529", "GSM158530", "GSM158531" ], "type": "cell type", "id": "GDS2735_3" }, { "dataset_id": "GDS2735", "description": "CD4 T cell", "sample_id": [ "GSM158532", "GSM158533", "GSM158534", "GSM158535", "GSM158536", "GSM158537", "GSM158538", "GSM158539", "GSM158540", "GSM158541", "GSM158542" ], "type": "cell type", "id": "GDS2735_4" }, { "dataset_id": "GDS2735", "description": "CD8 T cell", "sample_id": [ "GSM158543", "GSM158544", "GSM158545", "GSM158546", "GSM158547", "GSM158548", "GSM158597", "GSM158598", "GSM158600", "GSM158601", "GSM158603", "GSM158605" ], "type": "cell type", "id": "GDS2735_5" }, { "dataset_id": "GDS2735", "description": "Natural killer (NK) cell", "sample_id": [ "GSM158612", "GSM158613", "GSM158615", "GSM158617", "GSM158619", "GSM158623", "GSM158627", "GSM158629", "GSM158631", "GSM158632", "GSM158633", "GSM158634" ], "type": "cell type", "id": "GDS2735_6" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS2735", "version": 1.0, "instances": "46", "variables": 18358, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2735.tab", "compression": "gz" } ], [ [ "GDS2736.tab" ], { "title": "Malignant fibrous histiocytoma and various soft tissue sarcomas", "description": "Analysis of malignant fibrous histiocytoma (MFH) tumors and various soft tissue sarcomas (STSs). MFH is characterized by non-recurrent complex chromosomal aberrations, and overlapping histological and immunohistochemical phenotypes. Results provide insight into the similarities between MFH and STSs.", "type": "Expression profiling by array", "pubmed_id": "17464315", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "105", "value_type": "count", "reference_series": "GSE6481", "order": "none", "update_date": "May 29 2007", "subsets": [ { "dataset_id": "GDS2736", "description": "synovial sarcoma", "sample_id": [ "GSM149099", "GSM149100", "GSM149101", "GSM149102", "GSM149103", "GSM149104", "GSM149105", "GSM149106", "GSM149107", "GSM149108", "GSM149109", "GSM149110", "GSM149111", "GSM149112", "GSM149113", "GSM149114" ], "type": "disease state", "id": "GDS2736_1" }, { "dataset_id": "GDS2736", "description": "myxoid liposarcoma", "sample_id": [ "GSM149115", "GSM149116", "GSM149117", "GSM149118", "GSM149119", "GSM149120", "GSM149121", "GSM149122", "GSM149123", "GSM149124", "GSM149125", "GSM149126", "GSM149127", "GSM149128", "GSM149129", "GSM149130", "GSM149131", "GSM149132", "GSM149133" ], "type": "disease state", "id": "GDS2736_2" }, { "dataset_id": "GDS2736", "description": "lipoma", "sample_id": [ "GSM149134", "GSM149135", "GSM149136" ], "type": "disease state", "id": "GDS2736_3" }, { "dataset_id": "GDS2736", "description": "well-differentiated liposarcoma", "sample_id": [ "GSM149137", "GSM149138", "GSM149139" ], "type": "disease state", "id": "GDS2736_4" }, { "dataset_id": "GDS2736", "description": "dedifferentiated liposarcoma", "sample_id": [ "GSM149140", "GSM149141", "GSM149142", "GSM149143", "GSM149144", "GSM149145", "GSM149146", "GSM149147", "GSM149148", "GSM149149", "GSM149150", "GSM149151", "GSM149152", "GSM149153", "GSM149154" ], "type": "disease state", "id": "GDS2736_5" }, { "dataset_id": "GDS2736", "description": "myxofibrosarcoma", "sample_id": [ "GSM149155", "GSM149156", "GSM149157", "GSM149158", "GSM149159", "GSM149160", "GSM149161", "GSM149162", "GSM149163", "GSM149164", "GSM149165", "GSM149166", "GSM149167", "GSM149168", "GSM149169" ], "type": "disease state", "id": "GDS2736_6" }, { "dataset_id": "GDS2736", "description": "leiomyosarcoma", "sample_id": [ "GSM149170", "GSM149171", "GSM149172", "GSM149173", "GSM149174", "GSM149175" ], "type": "disease state", "id": "GDS2736_7" }, { "dataset_id": "GDS2736", "description": "malignant peripheral nerve sheath tumor", "sample_id": [ "GSM149176", "GSM149177", "GSM149178" ], "type": "disease state", "id": "GDS2736_8" }, { "dataset_id": "GDS2736", "description": "fibrosarcoma", "sample_id": [ "GSM149179", "GSM149180", "GSM149181", "GSM149182" ], "type": "disease state", "id": "GDS2736_9" }, { "dataset_id": "GDS2736", "description": "malignant fibrous histiocytoma", "sample_id": [ "GSM149183", "GSM149184", "GSM149185", "GSM149186", "GSM149187", "GSM149188", "GSM149189", "GSM149190", "GSM149191", "GSM149192", "GSM149193", "GSM149194", "GSM149195", "GSM149196", "GSM149197", "GSM149198", "GSM149199", "GSM149200", "GSM149201", "GSM149202", "GSM149203" ], "type": "disease state", "id": "GDS2736_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2736", "version": 1.0, "instances": "105", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2736.tab", "compression": "gz" } ], [ [ "GDS2737.tab" ], { "title": "Endometriosis", "description": "Analysis of endometrial specimens from women with endometriosis. Endometrial gene expression examined at various phases of the menstrual cycle. Results provide insight into the molecular pathogenesis of endometriosis.", "type": "Expression profiling by array", "pubmed_id": "17510236", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE6364", "order": "none", "update_date": "May 29 2007", "subsets": [ { "dataset_id": "GDS2737", "description": "normal", "sample_id": [ "GSM150196", "GSM150197", "GSM150198", "GSM150199", "GSM150201", "GSM150208", "GSM150209", "GSM150210", "GSM150220", "GSM150221", "GSM150222", "GSM150223", "GSM150224", "GSM150225", "GSM150226", "GSM150227" ], "type": "disease state", "id": "GDS2737_1" }, { "dataset_id": "GDS2737", "description": "endometriosis", "sample_id": [ "GSM150190", "GSM150191", "GSM150192", "GSM150193", "GSM150194", "GSM150195", "GSM150202", "GSM150203", "GSM150204", "GSM150205", "GSM150206", "GSM150207", "GSM150211", "GSM150212", "GSM150213", "GSM150214", "GSM150215", "GSM150216", "GSM150217", "GSM150218", "GSM150219" ], "type": "disease state", "id": "GDS2737_2" }, { "dataset_id": "GDS2737", "description": "proliferative", "sample_id": [ "GSM150190", "GSM150191", "GSM150192", "GSM150193", "GSM150194", "GSM150195", "GSM150196", "GSM150197", "GSM150198", "GSM150199", "GSM150201" ], "type": "other", "id": "GDS2737_3" }, { "dataset_id": "GDS2737", "description": "early secretory", "sample_id": [ "GSM150202", "GSM150203", "GSM150204", "GSM150205", "GSM150206", "GSM150207", "GSM150208", "GSM150209", "GSM150210" ], "type": "other", "id": "GDS2737_4" }, { "dataset_id": "GDS2737", "description": "mid secretory", "sample_id": [ "GSM150211", "GSM150212", "GSM150213", "GSM150214", "GSM150215", "GSM150216", "GSM150217", "GSM150218", "GSM150219", "GSM150220", "GSM150221", "GSM150222", "GSM150223", "GSM150224", "GSM150225", "GSM150226", "GSM150227" ], "type": "other", "id": "GDS2737_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2737", "version": 1.0, "instances": "37", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2737.tab", "compression": "gz" } ], [ [ "GDS2738.tab" ], { "title": "Ketogenic diet effect on the liver", "description": "Analysis of livers from animals fed a ketogenic diet (KD). KDs, diets that are high in fat and low in carbohydrates, are used as an approach to weight loss. Results provide insight into the KD-induced molecular mechanisms underlying the metabolic state congruous with weight loss.", "type": "Expression profiling by array", "pubmed_id": "17299079", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7699", "order": "none", "update_date": "Aug 10 2007", "subsets": [ { "dataset_id": "GDS2738", "description": "control diet", "sample_id": [ "GSM187259", "GSM187260", "GSM187261" ], "type": "protocol", "id": "GDS2738_1" }, { "dataset_id": "GDS2738", "description": "ketogenic diet", "sample_id": [ "GSM187262", "GSM187263", "GSM187264" ], "type": "protocol", "id": "GDS2738_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2738", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2738.tab", "compression": "gz" } ], [ [ "GDS2739.tab" ], { "title": "Hyperplastic enlarged lobular units: epithelial cells", "description": "Analysis of epithelial cells isolated from hyperplastic enlarged lobular units (HELUs). HELUs arise from the enlargement of normal terminal duct lobular units by hyperplastic columnar epithelial cells and are the earliest histologically identifiable precursor of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "17591970", "platform": "GPL1352", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "61359", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE7377", "order": "none", "update_date": "Sep 28 2007", "subsets": [ { "dataset_id": "GDS2739", "description": "normal terminal duct lobular unit", "sample_id": [ "GSM177454", "GSM177455", "GSM177456", "GSM177457", "GSM177458", "GSM177459", "GSM177460", "GSM177461" ], "type": "disease state", "id": "GDS2739_1" }, { "dataset_id": "GDS2739", "description": "hyperplastic enlarged lobular unit", "sample_id": [ "GSM177446", "GSM177447", "GSM177448", "GSM177449", "GSM177450", "GSM177451", "GSM177452", "GSM177453" ], "type": "disease state", "id": "GDS2739_2" } ], "taxid": "9606", "genes": 32392, "aggregation_function": "mean", "name": "GDS2739", "version": 1.0, "instances": "16", "variables": 32394, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2739.tab", "compression": "gz" } ], [ [ "GDS274.tab" ], { "title": "Hepatocellular carcinoma metastasis", "description": "Generation of a molecular signature for metastatic hepatocellular carcinoma (HCC) and identification of genes relevant to metastasis and patient survival. Osteopontin identified as molecular marker for defining metastatic potential.", "type": "Expression profiling by array", "pubmed_id": "12640447", "platform": "GPL257", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "87", "value_type": "log ratio", "reference_series": "GSE364", "order": "none", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS274", "description": "primary lesion", "sample_id": [ "GSM5316", "GSM5319", "GSM5321", "GSM5323", "GSM5325", "GSM5327", "GSM5329", "GSM5331", "GSM5333", "GSM5335", "GSM5337", "GSM5339", "GSM5341", "GSM5343", "GSM5345", "GSM5347", "GSM5349", "GSM5351", "GSM5353", "GSM5355", "GSM5357", "GSM5359", "GSM5361", "GSM5363", "GSM5365", "GSM5367", "GSM5369", "GSM5371", "GSM5373", "GSM5398", "GSM5399", "GSM5400", "GSM5401", "GSM5402", "GSM5396", "GSM5397" ], "type": "tissue", "id": "GDS274_1" }, { "dataset_id": "GDS274", "description": "matched metastatic lesion", "sample_id": [ "GSM5317", "GSM5318", "GSM5320", "GSM5322", "GSM5324", "GSM5326", "GSM5328", "GSM5330", "GSM5332", "GSM5334", "GSM5336", "GSM5338", "GSM5340", "GSM5342", "GSM5344", "GSM5346", "GSM5348", "GSM5350", "GSM5352", "GSM5354", "GSM5356", "GSM5358", "GSM5360", "GSM5362", "GSM5364", "GSM5366", "GSM5368", "GSM5370", "GSM5372" ], "type": "tissue", "id": "GDS274_2" }, { "dataset_id": "GDS274", "description": "primary lesion, no metastasis", "sample_id": [ "GSM5374", "GSM5375", "GSM5376", "GSM5377", "GSM5378", "GSM5379", "GSM5380", "GSM5381", "GSM5382", "GSM5383", "GSM5384", "GSM5385", "GSM5386", "GSM5387", "GSM5388", "GSM5389", "GSM5390", "GSM5391", "GSM5392", "GSM5393", "GSM5394", "GSM5395" ], "type": "tissue", "id": "GDS274_3" }, { "dataset_id": "GDS274", "description": "S11", "sample_id": [ "GSM5317", "GSM5316" ], "type": "individual", "id": "GDS274_4" }, { "dataset_id": "GDS274", "description": "S12", "sample_id": [ "GSM5318", "GSM5319" ], "type": "individual", "id": "GDS274_5" }, { "dataset_id": "GDS274", "description": "S14", "sample_id": [ "GSM5320", "GSM5321" ], "type": "individual", "id": "GDS274_6" }, { "dataset_id": "GDS274", "description": "S15", "sample_id": [ "GSM5322", "GSM5323" ], "type": "individual", "id": "GDS274_7" }, { "dataset_id": "GDS274", "description": "S17", "sample_id": [ "GSM5324", "GSM5325" ], "type": "individual", "id": "GDS274_8" }, { "dataset_id": "GDS274", "description": "S18", "sample_id": [ "GSM5326", "GSM5327" ], "type": "individual", "id": "GDS274_9" }, { "dataset_id": "GDS274", "description": "S19", "sample_id": [ "GSM5328", "GSM5329" ], "type": "individual", "id": "GDS274_10" }, { "dataset_id": "GDS274", "description": "S20", "sample_id": [ "GSM5330", "GSM5331", "GSM5332", "GSM5333" ], "type": "individual", "id": "GDS274_11" }, { "dataset_id": "GDS274", "description": "S21", "sample_id": [ "GSM5334", "GSM5335", "GSM5336", "GSM5337" ], "type": "individual", "id": "GDS274_12" }, { "dataset_id": "GDS274", "description": "S23", "sample_id": [ "GSM5338", "GSM5339", "GSM5340", "GSM5341" ], "type": "individual", "id": "GDS274_13" }, { "dataset_id": "GDS274", "description": "S24", "sample_id": [ "GSM5342", "GSM5343" ], "type": "individual", "id": "GDS274_14" }, { "dataset_id": "GDS274", "description": "S25", "sample_id": [ "GSM5344", "GSM5345", "GSM5346", "GSM5347" ], "type": "individual", "id": "GDS274_15" }, { "dataset_id": "GDS274", "description": "S26", "sample_id": [ "GSM5348", "GSM5349", "GSM5350", "GSM5351" ], "type": "individual", "id": "GDS274_16" }, { "dataset_id": "GDS274", "description": "S27", "sample_id": [ "GSM5352", "GSM5353", "GSM5354", "GSM5355" ], "type": "individual", "id": "GDS274_17" }, { "dataset_id": "GDS274", "description": "S28", "sample_id": [ "GSM5356", "GSM5357", "GSM5358", "GSM5359" ], "type": "individual", "id": "GDS274_18" }, { "dataset_id": "GDS274", "description": "S29", "sample_id": [ "GSM5360", "GSM5361", "GSM5362", "GSM5363" ], "type": "individual", "id": "GDS274_19" }, { "dataset_id": "GDS274", "description": "S30", "sample_id": [ "GSM5364", "GSM5365", "GSM5366", "GSM5367" ], "type": "individual", "id": "GDS274_20" }, { "dataset_id": "GDS274", "description": "S32", "sample_id": [ "GSM5368", "GSM5369" ], "type": "individual", "id": "GDS274_21" }, { "dataset_id": "GDS274", "description": "S33", "sample_id": [ "GSM5370", "GSM5371" ], "type": "individual", "id": "GDS274_22" }, { "dataset_id": "GDS274", "description": "S34", "sample_id": [ "GSM5372", "GSM5373" ], "type": "individual", "id": "GDS274_23" }, { "dataset_id": "GDS274", "description": "S41", "sample_id": [ "GSM5374", "GSM5375" ], "type": "individual", "id": "GDS274_24" }, { "dataset_id": "GDS274", "description": "S42", "sample_id": [ "GSM5376", "GSM5377" ], "type": "individual", "id": "GDS274_25" }, { "dataset_id": "GDS274", "description": "S44", "sample_id": [ "GSM5378", "GSM5379" ], "type": "individual", "id": "GDS274_26" }, { "dataset_id": "GDS274", "description": "S45", "sample_id": [ "GSM5380", "GSM5381" ], "type": "individual", "id": "GDS274_27" }, { "dataset_id": "GDS274", "description": "S46", "sample_id": [ "GSM5382", "GSM5383" ], "type": "individual", "id": "GDS274_28" }, { "dataset_id": "GDS274", "description": "S47", "sample_id": [ "GSM5384", "GSM5385" ], "type": "individual", "id": "GDS274_29" }, { "dataset_id": "GDS274", "description": "S49", "sample_id": [ "GSM5386", "GSM5387" ], "type": "individual", "id": "GDS274_30" }, { "dataset_id": "GDS274", "description": "S51", "sample_id": [ "GSM5392" ], "type": "individual", "id": "GDS274_31" }, { "dataset_id": "GDS274", "description": "S52", "sample_id": [ "GSM5388", "GSM5389" ], "type": "individual", "id": "GDS274_32" }, { "dataset_id": "GDS274", "description": "S53", "sample_id": [ "GSM5390", "GSM5391" ], "type": "individual", "id": "GDS274_33" }, { "dataset_id": "GDS274", "description": "S55", "sample_id": [ "GSM5393" ], "type": "individual", "id": "GDS274_34" }, { "dataset_id": "GDS274", "description": "S56", "sample_id": [ "GSM5394" ], "type": "individual", "id": "GDS274_35" }, { "dataset_id": "GDS274", "description": "S57", "sample_id": [ "GSM5395" ], "type": "individual", "id": "GDS274_36" }, { "dataset_id": "GDS274", "description": "S61", "sample_id": [ "GSM5396" ], "type": "individual", "id": "GDS274_37" }, { "dataset_id": "GDS274", "description": "S62", "sample_id": [ "GSM5397" ], "type": "individual", "id": "GDS274_38" }, { "dataset_id": "GDS274", "description": "S63", "sample_id": [ "GSM5398" ], "type": "individual", "id": "GDS274_39" }, { "dataset_id": "GDS274", "description": "S64", "sample_id": [ "GSM5400" ], "type": "individual", "id": "GDS274_40" }, { "dataset_id": "GDS274", "description": "S65", "sample_id": [ "GSM5399" ], "type": "individual", "id": "GDS274_41" }, { "dataset_id": "GDS274", "description": "S66", "sample_id": [ "GSM5401" ], "type": "individual", "id": "GDS274_42" }, { "dataset_id": "GDS274", "description": "S67", "sample_id": [ "GSM5402" ], "type": "individual", "id": "GDS274_43" }, { "dataset_id": "GDS274", "description": "HCC with intrahepatic spread metastasis", "sample_id": [ "GSM5316", "GSM5317", "GSM5322", "GSM5323", "GSM5324", "GSM5325", "GSM5326", "GSM5327", "GSM5330", "GSM5331", "GSM5332", "GSM5333", "GSM5342", "GSM5343", "GSM5352", "GSM5353", "GSM5354", "GSM5355", "GSM5360", "GSM5361", "GSM5362", "GSM5363", "GSM5364", "GSM5365", "GSM5366", "GSM5367", "GSM5368", "GSM5369", "GSM5396", "GSM5397", "GSM5400", "GSM5401", "GSM5402" ], "type": "disease state", "id": "GDS274_44" }, { "dataset_id": "GDS274", "description": "HCC with portal vein tumor thrombus metastasis", "sample_id": [ "GSM5318", "GSM5319", "GSM5320", "GSM5321", "GSM5328", "GSM5329", "GSM5334", "GSM5335", "GSM5336", "GSM5337", "GSM5338", "GSM5339", "GSM5340", "GSM5341", "GSM5344", "GSM5345", "GSM5346", "GSM5347", "GSM5348", "GSM5349", "GSM5350", "GSM5351", "GSM5356", "GSM5357", "GSM5358", "GSM5359", "GSM5370", "GSM5371", "GSM5372", "GSM5373", "GSM5398", "GSM5399" ], "type": "disease state", "id": "GDS274_45" }, { "dataset_id": "GDS274", "description": "HCC with no metastasis", "sample_id": [ "GSM5374", "GSM5375", "GSM5376", "GSM5377", "GSM5378", "GSM5379", "GSM5380", "GSM5381", "GSM5382", "GSM5383", "GSM5384", "GSM5385", "GSM5386", "GSM5387", "GSM5388", "GSM5389", "GSM5390", "GSM5391", "GSM5392", "GSM5393", "GSM5394", "GSM5395" ], "type": "disease state", "id": "GDS274_46" } ], "taxid": "9606", "genes": 8612, "aggregation_function": "mean", "name": "GDS274", "version": 1.0, "instances": "87", "variables": 8616, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS274.tab", "compression": "gz" } ], [ [ "GDS2740.tab" ], { "title": "Lengthening and shortening contractions effect on the muscle: time course", "description": "Analysis of skeletal muscles at various time points up to 24 hours after acute bouts of either lengthening (LCs) or shortening contractions (SCs). Resistance training using LCs results in greater increases in muscle size than SCs. Results provide insight into the molecular basis of this difference.", "type": "Expression profiling by array", "pubmed_id": "17519359", "platform": "GPL246", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4653", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE7286", "order": "none", "update_date": "May 30 2007", "subsets": [ { "dataset_id": "GDS2740", "description": "lengthening", "sample_id": [ "GSM175541", "GSM175577", "GSM175579", "GSM175581", "GSM175582", "GSM175583", "GSM175580", "GSM175584", "GSM175586", "GSM175587", "GSM175592", "GSM175598" ], "type": "protocol", "id": "GDS2740_1" }, { "dataset_id": "GDS2740", "description": "shortening", "sample_id": [ "GSM175578", "GSM175576", "GSM175585", "GSM175588", "GSM175589", "GSM175590", "GSM175591", "GSM175593", "GSM175594", "GSM175595", "GSM175596", "GSM175597" ], "type": "protocol", "id": "GDS2740_2" }, { "dataset_id": "GDS2740", "description": "baseline", "sample_id": [ "GSM175578", "GSM175581", "GSM175580", "GSM175585", "GSM175588", "GSM175592" ], "type": "time", "id": "GDS2740_3" }, { "dataset_id": "GDS2740", "description": "3 h", "sample_id": [ "GSM175583", "GSM175586", "GSM175589", "GSM175593", "GSM175595", "GSM175598" ], "type": "time", "id": "GDS2740_4" }, { "dataset_id": "GDS2740", "description": "6 h", "sample_id": [ "GSM175579", "GSM175584", "GSM175587", "GSM175590", "GSM175591", "GSM175594" ], "type": "time", "id": "GDS2740_5" }, { "dataset_id": "GDS2740", "description": "24 h", "sample_id": [ "GSM175541", "GSM175577", "GSM175576", "GSM175582", "GSM175596", "GSM175597" ], "type": "time", "id": "GDS2740_6" }, { "dataset_id": "GDS2740", "description": "subject 1", "sample_id": [ "GSM175577", "GSM175578", "GSM175579", "GSM175576", "GSM175583", "GSM175590", "GSM175592", "GSM175593" ], "type": "individual", "id": "GDS2740_7" }, { "dataset_id": "GDS2740", "description": "subject 2", "sample_id": [ "GSM175541", "GSM175580", "GSM175585", "GSM175586", "GSM175587", "GSM175594", "GSM175595", "GSM175596" ], "type": "individual", "id": "GDS2740_8" }, { "dataset_id": "GDS2740", "description": "subject 3", "sample_id": [ "GSM175581", "GSM175582", "GSM175584", "GSM175588", "GSM175589", "GSM175591", "GSM175597", "GSM175598" ], "type": "individual", "id": "GDS2740_9" } ], "taxid": "9606", "genes": 3075, "aggregation_function": "mean", "name": "GDS2740", "version": 1.0, "instances": "24", "variables": 3079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2740.tab", "compression": "gz" } ], [ [ "GDS2741.tab" ], { "title": "TCR-alpha/beta CD8-alpha/alpha intestinal intraepithelial lymphocytes", "description": "Analysis of TCR-alpha/beta CD8-alpha/alpha intestinal intraepithelial lymphocytes (IELs). Results provide insight into the function of TCR-alpha/beta CD8-alpha/alpha IELs in the mucosal immune system.", "type": "Expression profiling by array", "pubmed_id": "17371979", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5355", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2741", "description": "TCR-gamma-delta CD8-alpha-alpha", "sample_id": [ "GSM121620", "GSM121623" ], "type": "cell type", "id": "GDS2741_1" }, { "dataset_id": "GDS2741", "description": "TCR-alpha-beta CD8-alpha-beta", "sample_id": [ "GSM121619", "GSM121622" ], "type": "cell type", "id": "GDS2741_2" }, { "dataset_id": "GDS2741", "description": "TCR-alpha-beta CD8-alpha-alpha", "sample_id": [ "GSM121612", "GSM121621" ], "type": "cell type", "id": "GDS2741_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2741", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2741.tab", "compression": "gz" } ], [ [ "GDS2742.tab" ], { "title": "Type 1 diabetes mellitus model: mast cells", "description": "Analysis of mast cells isolated from the pancreatic lymph nodes of 60 day old prediabetic BioBiobreeding (BB) DR lyp/lyp animals. The BB DR lyp/lyp strain is a model for type 1 diabetes mellitus (T1DM). Results provide insight into the role of mast cells in the pathogenesis of T1DM.", "type": "Expression profiling by array", "pubmed_id": "17082646", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4990", "order": "none", "update_date": "May 30 2007", "subsets": [ { "dataset_id": "GDS2742", "description": "control", "sample_id": [ "GSM112488", "GSM112489" ], "type": "strain", "id": "GDS2742_1" }, { "dataset_id": "GDS2742", "description": "diabetic prone", "sample_id": [ "GSM112464", "GSM112487" ], "type": "strain", "id": "GDS2742_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2742", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2742.tab", "compression": "gz" } ], [ [ "GDS2743.tab" ], { "title": "Brown and white adipocyte differentiation", "description": "Comparison of brown and white preadipocytes at the undifferentiated and differentiating stages. Unlike white adipocytes, brown adipocytes have an abundance of mitochondria and are thus able to contribute to energy expenditure. Results provide insight into the molecular basis of this difference.", "type": "Expression profiling by array", "pubmed_id": "17360536", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE7032", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2743", "description": "brown preadipocyte", "sample_id": [ "GSM162532", "GSM162533", "GSM162534", "GSM162535", "GSM162536", "GSM162537", "GSM162538", "GSM162539", "GSM162540", "GSM162541" ], "type": "cell type", "id": "GDS2743_1" }, { "dataset_id": "GDS2743", "description": "white preadipocyte", "sample_id": [ "GSM162542", "GSM162543", "GSM162544", "GSM162545", "GSM162546", "GSM162547", "GSM162548", "GSM162549", "GSM162550", "GSM162551", "GSM162552", "GSM162553", "GSM162554", "GSM162555" ], "type": "cell type", "id": "GDS2743_2" }, { "dataset_id": "GDS2743", "description": "undifferentiated", "sample_id": [ "GSM162532", "GSM162533", "GSM162534", "GSM162535", "GSM162536", "GSM162542", "GSM162543", "GSM162544", "GSM162545", "GSM162546", "GSM162547", "GSM162548", "GSM162549" ], "type": "development stage", "id": "GDS2743_3" }, { "dataset_id": "GDS2743", "description": "differentiating", "sample_id": [ "GSM162537", "GSM162538", "GSM162539", "GSM162540", "GSM162541", "GSM162550", "GSM162551", "GSM162552", "GSM162553", "GSM162554", "GSM162555" ], "type": "development stage", "id": "GDS2743_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2743", "version": 1.0, "instances": "24", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2743.tab", "compression": "gz" } ], [ [ "GDS2744.tab" ], { "title": "Dioxin effect on breast cancer cell line (HG-U133A)", "description": "Analysis of MCF-7 breast cancer cells treated with 100 nM dioxin. Although dioxin is causative for many types of cancers, low exposure to dioxin is associated with a decreased incidence of breast carcinoma. Results provide insight into the molecular basis of this protective effect.", "type": "Expression profiling by array", "pubmed_id": "17517823", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7765", "order": "none", "update_date": "Aug 03 2007", "subsets": [ { "dataset_id": "GDS2744", "description": "control", "sample_id": [ "GSM188013", "GSM188016", "GSM188020" ], "type": "agent", "id": "GDS2744_1" }, { "dataset_id": "GDS2744", "description": "dioxin", "sample_id": [ "GSM188014", "GSM188018", "GSM188022" ], "type": "agent", "id": "GDS2744_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2744", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2744.tab", "compression": "gz" } ], [ [ "GDS2745.tab" ], { "title": "Dioxin effect on breast cancer cell line (HG-U133B)", "description": "Analysis of MCF-7 breast cancer cells treated with 100 nM dioxin. Although dioxin is causative for many types of cancers, low exposure to dioxin is associated with a decreased incidence of breast carcinoma. Results provide insight into the molecular basis of this protective effect.", "type": "Expression profiling by array", "pubmed_id": "17517823", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7765", "order": "none", "update_date": "May 31 2007", "subsets": [ { "dataset_id": "GDS2745", "description": "control", "sample_id": [ "GSM188012", "GSM188017", "GSM188021" ], "type": "agent", "id": "GDS2745_1" }, { "dataset_id": "GDS2745", "description": "dioxin", "sample_id": [ "GSM188015", "GSM188019", "GSM188023" ], "type": "agent", "id": "GDS2745_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2745", "version": 1.0, "instances": "6", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2745.tab", "compression": "gz" } ], [ [ "GDS2746.tab" ], { "title": "Lmna H222P homozygous and heterozygous mutant models of Emery-Dreifuss muscular dystrophy: hearts", "description": "Analysis of hearts of A-type lamin Lmna H222P homo-/heterozygous mutants. LMNA mutations lead to autosomal dominant and recessive Emery-Dreifuss muscular dystrophy which is characterized by dilated cardiomyopathy. Results provide insight into the role of LMNA in the development of cardiomyopathy.", "type": "Expression profiling by array", "pubmed_id": "17446932", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE8000", "order": "none", "update_date": "Jun 01 2007", "subsets": [ { "dataset_id": "GDS2746", "description": "control", "sample_id": [ "GSM147451", "GSM147452", "GSM147459", "GSM147460", "GSM147461", "GSM147462", "GSM147463", "GSM147465" ], "type": "genotype/variation", "id": "GDS2746_1" }, { "dataset_id": "GDS2746", "description": "homozygous mutant", "sample_id": [ "GSM147514", "GSM147515", "GSM147516", "GSM147517", "GSM147518", "GSM147519" ], "type": "genotype/variation", "id": "GDS2746_2" }, { "dataset_id": "GDS2746", "description": "heterozygous mutant", "sample_id": [ "GSM147506", "GSM147507", "GSM147509", "GSM147510", "GSM147511", "GSM147512", "GSM147513" ], "type": "genotype/variation", "id": "GDS2746_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2746", "version": 1.0, "instances": "21", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2746.tab", "compression": "gz" } ], [ [ "GDS2747.tab" ], { "title": "Wilms' tumor protein Wt1 deficiency effect on the urogenital ridge", "description": "Analysis of urogenital ridges from E11.5 embryos lacking the Wilms\u2019 tumor protein Wt1. Wt1 is a transcription factor known to play an important role in urogenital development. Results provide insight into the molecular mechanisms underlying Wt1 function in gonad and mesonephros development.", "type": "Expression profiling by array", "pubmed_id": "17420277", "platform": "GPL1524", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20289", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6700", "order": "none", "update_date": "Aug 03 2007", "subsets": [ { "dataset_id": "GDS2747", "description": "wild type", "sample_id": [ "GSM154563", "GSM154564", "GSM154565" ], "type": "genotype/variation", "id": "GDS2747_1" }, { "dataset_id": "GDS2747", "description": "Wt1 null mutant", "sample_id": [ "GSM154566", "GSM154567", "GSM154568" ], "type": "genotype/variation", "id": "GDS2747_2" } ], "taxid": "10090", "genes": 18436, "aggregation_function": "mean", "name": "GDS2747", "version": 1.0, "instances": "6", "variables": 18438, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2747.tab", "compression": "gz" } ], [ [ "GDS2748.tab" ], { "title": "Homeodomain protein Lim1 deficiency effect on embryonic renal vesicles", "description": "Analysis of Lim1-null renal vesicles microdissected from embryonic day 12.5 kidneys. In Lim1 null embryos, the formation of comma shaped bodies from renal vesicles is interrupted. Results provide insight into the molecular basis of this developmental arrest.", "type": "Expression profiling by array", "pubmed_id": "17610272", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE7257", "order": "none", "update_date": "Jun 05 2007", "subsets": [ { "dataset_id": "GDS2748", "description": "wild type", "sample_id": [ "GSM174757", "GSM174758", "GSM174759", "GSM174760", "GSM174761" ], "type": "genotype/variation", "id": "GDS2748_1" }, { "dataset_id": "GDS2748", "description": "Lim1 mutant", "sample_id": [ "GSM174762", "GSM174763", "GSM174764", "GSM174891" ], "type": "genotype/variation", "id": "GDS2748_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2748", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2748.tab", "compression": "gz" } ], [ [ "GDS2749.tab" ], { "title": "Immature dendritic cell response to Aspergillus fumigatus infection in vitro", "description": "Analysis of dendritic cells (DCs) infected with Aspergillus fumigatus (AF) in vitro. DCs obtained from two healthy donors. AF is a ubiquitous mold and a common cause of invasive aspergillosis (IA) in immunocompromised patients. Results provide insight into DC involvement in antifungal defense.", "type": "Expression profiling by array", "pubmed_id": "18426895", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE6965", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2749", "description": "donor 1", "sample_id": [ "GSM160530", "GSM160532" ], "type": "individual", "id": "GDS2749_1" }, { "dataset_id": "GDS2749", "description": "donor 2", "sample_id": [ "GSM160534", "GSM160536" ], "type": "individual", "id": "GDS2749_2" }, { "dataset_id": "GDS2749", "description": "uninfected", "sample_id": [ "GSM160530", "GSM160534" ], "type": "infection", "id": "GDS2749_3" }, { "dataset_id": "GDS2749", "description": "A. fumigatus", "sample_id": [ "GSM160532", "GSM160536" ], "type": "infection", "id": "GDS2749_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2749", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2749.tab", "compression": "gz" } ], [ [ "GDS2750.tab" ], { "title": "Immature dendritic cell response to hypoxia in vitro", "description": "Analysis of immature dendritic cells (DCs) differentiated from monocytes under hypoxia for 4 days. DCs are antigen presenting cells whose development is influenced by the microenvironment. Hypoxia is an important constituent of the microenvironment of inflamed tissues.", "type": "Expression profiling by array", "pubmed_id": "18314479", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6863", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2750", "description": "normoxia", "sample_id": [ "GSM158184", "GSM158186", "GSM158187" ], "type": "stress", "id": "GDS2750_1" }, { "dataset_id": "GDS2750", "description": "hypoxia", "sample_id": [ "GSM158148", "GSM158182", "GSM158183" ], "type": "stress", "id": "GDS2750_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2750", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2750.tab", "compression": "gz" } ], [ [ "GDS2751.tab" ], { "title": "Pocket protein ortholog lin-35 null mutant at various stages of development", "description": "Analysis of lin-35 null mutants at the embryonic stage, and L1 and L4 larval stages. LIN-35 is an ortholog of the mammalian pocket protein family members, pRb, p107, and p130. Results provide insight into the role of pocket proteins in development.", "type": "Expression profiling by array", "pubmed_id": "17368442", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE6547", "order": "none", "update_date": "Nov 02 2007", "subsets": [ { "dataset_id": "GDS2751", "description": "wild type", "sample_id": [ "GSM146422", "GSM146423", "GSM147330", "GSM147334", "GSM147335", "GSM147336", "GSM147340", "GSM147341", "GSM147342" ], "type": "genotype/variation", "id": "GDS2751_1" }, { "dataset_id": "GDS2751", "description": "lin-35 mutant", "sample_id": [ "GSM147331", "GSM147332", "GSM147333", "GSM147337", "GSM147338", "GSM147339", "GSM147344", "GSM147345", "GSM147346" ], "type": "genotype/variation", "id": "GDS2751_2" }, { "dataset_id": "GDS2751", "description": "embryonic stage", "sample_id": [ "GSM147340", "GSM147341", "GSM147342", "GSM147344", "GSM147345", "GSM147346" ], "type": "development stage", "id": "GDS2751_3" }, { "dataset_id": "GDS2751", "description": "L1 stage", "sample_id": [ "GSM146422", "GSM146423", "GSM147330", "GSM147331", "GSM147332", "GSM147333" ], "type": "development stage", "id": "GDS2751_4" }, { "dataset_id": "GDS2751", "description": "L4 stage", "sample_id": [ "GSM147334", "GSM147335", "GSM147336", "GSM147337", "GSM147338", "GSM147339" ], "type": "development stage", "id": "GDS2751_5" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS2751", "version": 1.0, "instances": "18", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2751.tab", "compression": "gz" } ], [ [ "GDS2752.tab" ], { "title": "Interferon regulatory factor-1 effect on transformed cells", "description": "Analysis of myc/ras transformed cells expressing interferon regulatory factor-1 (IRF-1). IRF-1 mediates proliferation inhibition and reversion of the transformed phenotype of oncogenic cells. Results provide insight into the molecular alterations initiated by the action of IRF-1.", "type": "Expression profiling by array", "pubmed_id": "17409403", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6505", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2752", "description": "non-transformed", "sample_id": [ "GSM149569", "GSM149572" ], "type": "cell type", "id": "GDS2752_1" }, { "dataset_id": "GDS2752", "description": "transformed", "sample_id": [ "GSM149570", "GSM149571", "GSM149573", "GSM149574" ], "type": "cell type", "id": "GDS2752_2" }, { "dataset_id": "GDS2752", "description": "no activation", "sample_id": [ "GSM149569", "GSM149570", "GSM149572", "GSM149573" ], "type": "protocol", "id": "GDS2752_3" }, { "dataset_id": "GDS2752", "description": "IRF-1 activation", "sample_id": [ "GSM149571", "GSM149574" ], "type": "protocol", "id": "GDS2752_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2752", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2752.tab", "compression": "gz" } ], [ [ "GDS2753.tab" ], { "title": "Enterohemorrhagic Escherichia coli biofilm response to 7-hydroxyindole and isatin", "description": "Analysis of enterohemorrhagic Escherichia coli biofilm treated with 7-hydroxyindole or oxidized indole (isatin). Many bacterial oxygenases readily convert indole, an interspecies biofilm signal, into oxidized compounds. Results provide insight into the role of oxidized indoles in biofilm formation.", "type": "Expression profiling by array", "pubmed_id": "17483266", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6195", "order": "none", "update_date": "Nov 05 2007", "subsets": [ { "dataset_id": "GDS2753", "description": "suspension cells", "sample_id": [ "GSM143158" ], "type": "cell type", "id": "GDS2753_1" }, { "dataset_id": "GDS2753", "description": "biofilm cells", "sample_id": [ "GSM143159", "GSM143160", "GSM143161" ], "type": "cell type", "id": "GDS2753_2" }, { "dataset_id": "GDS2753", "description": "untreated", "sample_id": [ "GSM143158", "GSM143159" ], "type": "agent", "id": "GDS2753_3" }, { "dataset_id": "GDS2753", "description": "7-hydroxyindole", "sample_id": [ "GSM143160" ], "type": "agent", "id": "GDS2753_4" }, { "dataset_id": "GDS2753", "description": "isatin (indole-2,3-dione)", "sample_id": [ "GSM143161" ], "type": "agent", "id": "GDS2753_5" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS2753", "version": 1.0, "instances": "4", "variables": 8806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2753.tab", "compression": "gz" } ], [ [ "GDS2754.tab" ], { "title": "Exhaustive exercise effect on peripheral blood mononuclear cells and T lymphocytes", "description": "Analysis of peripheral blood mononuclear cells and T lymphocytes from individuals before and after a bout of acute exhaustive exercise. White blood cell (WBC) subpopulations shift during physical activities. Results provide insight into the response of sorted WBC subpopulations to acute exercise.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6053", "order": "none", "update_date": "Nov 05 2007", "subsets": [ { "dataset_id": "GDS2754", "description": "proband 1", "sample_id": [ "GSM128412", "GSM128413", "GSM128414", "GSM128415" ], "type": "individual", "id": "GDS2754_1" }, { "dataset_id": "GDS2754", "description": "proband 2", "sample_id": [ "GSM128416", "GSM128417", "GSM128418", "GSM128419" ], "type": "individual", "id": "GDS2754_2" }, { "dataset_id": "GDS2754", "description": "proband 3", "sample_id": [ "GSM128420", "GSM128421", "GSM128422", "GSM128423" ], "type": "individual", "id": "GDS2754_3" }, { "dataset_id": "GDS2754", "description": "before exercise", "sample_id": [ "GSM128412", "GSM128413", "GSM128416", "GSM128417", "GSM128420", "GSM128421" ], "type": "protocol", "id": "GDS2754_4" }, { "dataset_id": "GDS2754", "description": "after exercise", "sample_id": [ "GSM128414", "GSM128415", "GSM128418", "GSM128419", "GSM128422", "GSM128423" ], "type": "protocol", "id": "GDS2754_5" }, { "dataset_id": "GDS2754", "description": "PBMC", "sample_id": [ "GSM128413", "GSM128415", "GSM128417", "GSM128419", "GSM128420", "GSM128422" ], "type": "cell type", "id": "GDS2754_6" }, { "dataset_id": "GDS2754", "description": "T cell", "sample_id": [ "GSM128412", "GSM128414", "GSM128416", "GSM128418", "GSM128421", "GSM128423" ], "type": "cell type", "id": "GDS2754_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2754", "version": 1.0, "instances": "12", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2754.tab", "compression": "gz" } ], [ [ "GDS2755.tab" ], { "title": "miR-34 overexpression", "description": "Analysis of HCT116 cells overexpressing miR-34, a microRNA. miR-34 is commonly deleted in human cancers. Results provide insight into the function of miR-34.", "type": "Expression profiling by array", "pubmed_id": "17540599", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7754", "order": "none", "update_date": "Jun 12 2007", "subsets": [ { "dataset_id": "GDS2755", "description": "control", "sample_id": [ "GSM187633", "GSM187634" ], "type": "protocol", "id": "GDS2755_1" }, { "dataset_id": "GDS2755", "description": "miR-34 overexpression", "sample_id": [ "GSM187631", "GSM187632" ], "type": "protocol", "id": "GDS2755_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2755", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2755.tab", "compression": "gz" } ], [ [ "GDS2756.tab" ], { "title": "Measles: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells (PBMCs) from measles patients. PBMCs collected upon hospital admission, at discharge, and one month after discharge. Results provide insight into the immunological changes that occur during measles infections.", "type": "Expression profiling by array", "pubmed_id": "17538120", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE5808", "order": "none", "update_date": "Jun 12 2007", "subsets": [ { "dataset_id": "GDS2756", "description": "uninfected", "sample_id": [ "GSM135280", "GSM135572", "GSM135573" ], "type": "infection", "id": "GDS2756_1" }, { "dataset_id": "GDS2756", "description": "measles", "sample_id": [ "GSM135575", "GSM135576", "GSM135577", "GSM135579", "GSM135580", "GSM135581", "GSM135582", "GSM135583", "GSM135585", "GSM135586", "GSM135587", "GSM135588", "GSM135589", "GSM135590", "GSM135591" ], "type": "infection", "id": "GDS2756_2" }, { "dataset_id": "GDS2756", "description": "control", "sample_id": [ "GSM135280", "GSM135572", "GSM135573" ], "type": "protocol", "id": "GDS2756_3" }, { "dataset_id": "GDS2756", "description": "admission", "sample_id": [ "GSM135575", "GSM135579", "GSM135582", "GSM135586", "GSM135589" ], "type": "protocol", "id": "GDS2756_4" }, { "dataset_id": "GDS2756", "description": "discharge", "sample_id": [ "GSM135576", "GSM135580", "GSM135583", "GSM135587", "GSM135590" ], "type": "protocol", "id": "GDS2756_5" }, { "dataset_id": "GDS2756", "description": "1 month after discharge", "sample_id": [ "GSM135577", "GSM135581", "GSM135585", "GSM135588", "GSM135591" ], "type": "protocol", "id": "GDS2756_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2756", "version": 1.0, "instances": "18", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2756.tab", "compression": "gz" } ], [ [ "GDS2757.tab" ], { "title": "Retinoblastoma protein deficiency effect on fetal livers", "description": "Analysis of embryonic day 12.5 livers from retinoblastoma protein (Rb)-null mutants. Rb-null embryos exhibit defective fetal liver erythropoiesis. Results provide insight into the molecular basis of the erythroblastic island defect in the Rb-null fetal liver.", "type": "Expression profiling by array", "pubmed_id": "17557897", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6787", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2757", "description": "wild type", "sample_id": [ "GSM156787", "GSM156788", "GSM156789" ], "type": "genotype/variation", "id": "GDS2757_1" }, { "dataset_id": "GDS2757", "description": "Rb null", "sample_id": [ "GSM156784", "GSM156785", "GSM156786" ], "type": "genotype/variation", "id": "GDS2757_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2757", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2757.tab", "compression": "gz" } ], [ [ "GDS2758.tab" ], { "title": "Hypoxia and 2-oxoglutrate-dependent dioxygenase inhibition (HG-U133A)", "description": "Analysis of MCF-7 breast cancer cells exposed to hypoxia or treated with the non-specific 2-oxoglutarate (2-OG) dependent dioxygenase inhibitor dimethyloxalylglycine. Results provide insight into the role of 2-OG dioxygenases in the regulation of gene expression during hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16565084", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE3188", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2758", "description": "normoxia", "sample_id": [ "GSM71498", "GSM71499", "GSM71500" ], "type": "protocol", "id": "GDS2758_1" }, { "dataset_id": "GDS2758", "description": "hypoxia", "sample_id": [ "GSM71501", "GSM71502", "GSM71503" ], "type": "protocol", "id": "GDS2758_2" }, { "dataset_id": "GDS2758", "description": "dimethyloxalylglycine", "sample_id": [ "GSM71504", "GSM71505", "GSM71506" ], "type": "protocol", "id": "GDS2758_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2758", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2758.tab", "compression": "gz" } ], [ [ "GDS2759.tab" ], { "title": "Hypoxia and 2-oxoglutrate-dependent dioxygenase inhibition (Human-6 BeadChip)", "description": "Analysis of MCF-7 breast cancer cells exposed to hypoxia or treated with the non-specific 2-oxoglutarate (2-OG) dependent dioxygenase inhibitor dimethyloxalylglycine. Results provide insight into the role of 2-OG dioxygenases in the regulation of gene expression during hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16565084", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE3188", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2759", "description": "normoxia", "sample_id": [ "GSM71605", "GSM71607" ], "type": "protocol", "id": "GDS2759_1" }, { "dataset_id": "GDS2759", "description": "hypoxia", "sample_id": [ "GSM71609", "GSM71611" ], "type": "protocol", "id": "GDS2759_2" }, { "dataset_id": "GDS2759", "description": "dimethyloxalylglycine", "sample_id": [ "GSM71615", "GSM71616" ], "type": "protocol", "id": "GDS2759_3" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS2759", "version": 1.0, "instances": "6", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2759.tab", "compression": "gz" } ], [ [ "GDS276.tab" ], { "title": "Muscle profiles", "description": "Examination of control adult rat extraocular muscle, cardiac muscle, leg gastroc-soleus muscle and smooth muscle from stomach wall.", "type": "Expression profiling by array", "pubmed_id": "12832294", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE142", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS276", "description": "extraocular muscle", "sample_id": [ "GSM3386", "GSM3387", "GSM3448", "GSM3449" ], "type": "tissue", "id": "GDS276_1" }, { "dataset_id": "GDS276", "description": "cardiac ventricle muscle", "sample_id": [ "GSM3450", "GSM3451", "GSM3452", "GSM3453" ], "type": "tissue", "id": "GDS276_2" }, { "dataset_id": "GDS276", "description": "leg gastrocnemius/soleus muscle", "sample_id": [ "GSM3669", "GSM3670", "GSM3671" ], "type": "tissue", "id": "GDS276_3" }, { "dataset_id": "GDS276", "description": "stomach wall smooth muscle", "sample_id": [ "GSM3672", "GSM3673", "GSM3674" ], "type": "tissue", "id": "GDS276_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS276", "version": 1.0, "instances": "14", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS276.tab", "compression": "gz" } ], [ [ "GDS2760.tab" ], { "title": "Hypoxia-inducible factor depletion (HG-U133 2.0)", "description": "Analysis of hypoxic MCF-7 breast cancer cells depleted for hypoxia-inducible factor (HIF)-1alpha, HIF-2alpha, or both HIF alpha subunits. Results provide insight into the extent of the role of HIF-1alpha and HIF-2alpha in the regulation of gene expression during hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16565084", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3188", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2760", "description": "control", "sample_id": [ "GSM71507", "GSM71509", "GSM71511" ], "type": "protocol", "id": "GDS2760_1" }, { "dataset_id": "GDS2760", "description": "HIF-1alpha depletion", "sample_id": [ "GSM71540", "GSM71541", "GSM71542" ], "type": "protocol", "id": "GDS2760_2" }, { "dataset_id": "GDS2760", "description": "HIF-2alpha depletion", "sample_id": [ "GSM71543", "GSM71544", "GSM71545" ], "type": "protocol", "id": "GDS2760_3" }, { "dataset_id": "GDS2760", "description": "HIF-1alpha HIF-2alpha depletion", "sample_id": [ "GSM71546", "GSM71547", "GSM71548" ], "type": "protocol", "id": "GDS2760_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2760", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2760.tab", "compression": "gz" } ], [ [ "GDS2761.tab" ], { "title": "Hypoxia-inducible factor depletion (Human-6 BeadChip)", "description": "Analysis of hypoxic MCF-7 breast cancer cells depleted for hypoxia-inducible factor (HIF)-1alpha, HIF-2alpha, or both HIF alpha subunits. Results provide insight into the extent of the role of HIF-1alpha and HIF-2alpha in the regulation of gene expression during hypoxia.", "type": "Expression profiling by array", "pubmed_id": "16565084", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE3188", "order": "none", "update_date": "Aug 03 2007", "subsets": [ { "dataset_id": "GDS2761", "description": "control", "sample_id": [ "GSM71659", "GSM71660", "GSM71661" ], "type": "protocol", "id": "GDS2761_1" }, { "dataset_id": "GDS2761", "description": "HIF-1alpha depletion", "sample_id": [ "GSM71662", "GSM71663", "GSM71664" ], "type": "protocol", "id": "GDS2761_2" }, { "dataset_id": "GDS2761", "description": "HIF-2alpha depletion", "sample_id": [ "GSM71665", "GSM71666", "GSM71667" ], "type": "protocol", "id": "GDS2761_3" }, { "dataset_id": "GDS2761", "description": "HIF-1alpha HIF-2alpha depletion", "sample_id": [ "GSM71668", "GSM71669", "GSM71670" ], "type": "protocol", "id": "GDS2761_4" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS2761", "version": 1.0, "instances": "12", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2761.tab", "compression": "gz" } ], [ [ "GDS2762.tab" ], { "title": "Interferon receptor deficient lymph node B cell response to influenza infection", "description": "Analysis of lymph node B cells from interferon receptor (IFNR) null mutants infected with the influenza virus. Wild type B cells treated with IFN-beta also examined. Results provide insight into the role of IFNR signaling in the immune response mediated by B cells during influenza infections.", "type": "Expression profiling by array", "pubmed_id": "17237394", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE3203", "order": "none", "update_date": "Jun 13 2007", "subsets": [ { "dataset_id": "GDS2762", "description": "wild type", "sample_id": [ "GSM71992", "GSM71993", "GSM71994", "GSM71995", "GSM71996", "GSM71997", "GSM71998", "GSM71999", "GSM72004", "GSM72005", "GSM72006", "GSM72007" ], "type": "genotype/variation", "id": "GDS2762_1" }, { "dataset_id": "GDS2762", "description": "IFNR null", "sample_id": [ "GSM72000", "GSM72001", "GSM72002", "GSM72003" ], "type": "genotype/variation", "id": "GDS2762_2" }, { "dataset_id": "GDS2762", "description": "uninfected", "sample_id": [ "GSM71992", "GSM71993", "GSM71994", "GSM71995", "GSM72004", "GSM72005", "GSM72006", "GSM72007" ], "type": "infection", "id": "GDS2762_3" }, { "dataset_id": "GDS2762", "description": "influenza", "sample_id": [ "GSM71996", "GSM71997", "GSM71998", "GSM71999", "GSM72000", "GSM72001", "GSM72002", "GSM72003" ], "type": "infection", "id": "GDS2762_4" }, { "dataset_id": "GDS2762", "description": "not applicable", "sample_id": [ "GSM71992", "GSM71993", "GSM71994", "GSM71995", "GSM71996", "GSM71997", "GSM71998", "GSM71999", "GSM72000", "GSM72001", "GSM72002", "GSM72003" ], "type": "agent", "id": "GDS2762_5" }, { "dataset_id": "GDS2762", "description": "IFN-beta", "sample_id": [ "GSM72004", "GSM72005", "GSM72006", "GSM72007" ], "type": "agent", "id": "GDS2762_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2762", "version": 1.0, "instances": "16", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2762.tab", "compression": "gz" } ], [ [ "GDS2763.tab" ], { "title": "Polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy: dendritic cells", "description": "Analysis of in vitro differentiated dendritic cells (DCs) from patients with PLOSL, an early onset dementia with bone cysts caused by mutations in DAP12 and TREM2 genes which encode important signaling molecules in DCs. Results provide further insight into mechanisms underlying PLOSL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17530208", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3624", "order": "none", "update_date": "Nov 09 2007", "subsets": [ { "dataset_id": "GDS2763", "description": "control", "sample_id": [ "GSM83892", "GSM83893", "GSM83894" ], "type": "disease state", "id": "GDS2763_1" }, { "dataset_id": "GDS2763", "description": "PLOSL", "sample_id": [ "GSM83889", "GSM83890", "GSM83891", "GSM83895", "GSM83896" ], "type": "disease state", "id": "GDS2763_2" }, { "dataset_id": "GDS2763", "description": "control", "sample_id": [ "GSM83892", "GSM83893", "GSM83894" ], "type": "genotype/variation", "id": "GDS2763_3" }, { "dataset_id": "GDS2763", "description": "DAP12 mutant", "sample_id": [ "GSM83889", "GSM83890", "GSM83891" ], "type": "genotype/variation", "id": "GDS2763_4" }, { "dataset_id": "GDS2763", "description": "TREM2 mutant", "sample_id": [ "GSM83895", "GSM83896" ], "type": "genotype/variation", "id": "GDS2763_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2763", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2763.tab", "compression": "gz" } ], [ [ "GDS2765.tab" ], { "title": "Creatine effect on the brain", "description": "Analysis of brains of C57Bl/6J animals fed a creatine supplemented diet for 6 months. Creatine has a neuroprotective effect in animal models of neurodegenerative diseases. Results provide insight into the molecular basis of this neuroprotective effect.", "type": "Expression profiling by array", "pubmed_id": "17416441", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE5140", "order": "none", "update_date": "Jun 18 2007", "subsets": [ { "dataset_id": "GDS2765", "description": "control", "sample_id": [ "GSM115532", "GSM115533", "GSM115534", "GSM115535", "GSM115536", "GSM115537", "GSM115538" ], "type": "agent", "id": "GDS2765_1" }, { "dataset_id": "GDS2765", "description": "creatine", "sample_id": [ "GSM115526", "GSM115527", "GSM115528", "GSM115529", "GSM115530", "GSM115531" ], "type": "agent", "id": "GDS2765_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2765", "version": 1.0, "instances": "13", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2765.tab", "compression": "gz" } ], [ [ "GDS2766.tab" ], { "title": "Dominant negative cJun effect on apolipoprotein E deficient livers", "description": "Analysis of apolipoprotein E deficient livers from animals expressing a dominant negative cJun (dn-c-Jun). Lipoproteins transport cholesterol and other fats through the bloodstream. Results provide insight into the pathways involved in regulating plasma cholesterol that are affected by dn-c-Jun.", "type": "Expression profiling by array", "pubmed_id": "17456467", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6850", "order": "none", "update_date": "Jun 18 2007", "subsets": [ { "dataset_id": "GDS2766", "description": "control", "sample_id": [ "GSM157850", "GSM157857", "GSM157858", "GSM157859", "GSM157860" ], "type": "agent", "id": "GDS2766_1" }, { "dataset_id": "GDS2766", "description": "dominant negative cJun", "sample_id": [ "GSM157861", "GSM157862", "GSM157863", "GSM157864", "GSM157865" ], "type": "agent", "id": "GDS2766_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2766", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2766.tab", "compression": "gz" } ], [ [ "GDS2767.tab" ], { "title": "Blood response to various beverages: time course", "description": "Analysis of blood samples from 6 individuals at various time points up to 12 hours following the intake of water, ethanol, grape juice, or red wine. Results may contribute to elucidating the mechanisms underlying the cardioprotective effects of red wine.", "type": "Expression profiling by array", "pubmed_id": "17010189", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "108", "value_type": "transformed count", "reference_series": "GSE3846", "order": "none", "update_date": "Aug 10 2007", "subsets": [ { "dataset_id": "GDS2767", "description": "0 h", "sample_id": [ "GSM87853", "GSM87858", "GSM87863", "GSM87868", "GSM87873", "GSM87882", "GSM87887", "GSM87891", "GSM87896", "GSM87901", "GSM87906", "GSM87910", "GSM87917", "GSM87920", "GSM87924", "GSM87929", "GSM87934", "GSM87938", "GSM87943", "GSM87948", "GSM87953" ], "type": "time", "id": "GDS2767_1" }, { "dataset_id": "GDS2767", "description": "1 h", "sample_id": [ "GSM87854", "GSM87859", "GSM87864", "GSM87869", "GSM87874", "GSM87878", "GSM87883", "GSM87888", "GSM87892", "GSM87897", "GSM87902", "GSM87907", "GSM87911", "GSM87921", "GSM87925", "GSM87930", "GSM87935", "GSM87939", "GSM87944", "GSM87949", "GSM87954", "GSM87957" ], "type": "time", "id": "GDS2767_2" }, { "dataset_id": "GDS2767", "description": "2 h", "sample_id": [ "GSM87855", "GSM87860", "GSM87865", "GSM87870", "GSM87875", "GSM87879", "GSM87884", "GSM87889", "GSM87893", "GSM87898", "GSM87903", "GSM87912", "GSM87915", "GSM87918", "GSM87922", "GSM87926", "GSM87931", "GSM87936", "GSM87940", "GSM87945", "GSM87950", "GSM87958" ], "type": "time", "id": "GDS2767_3" }, { "dataset_id": "GDS2767", "description": "4 h", "sample_id": [ "GSM87856", "GSM87861", "GSM87866", "GSM87871", "GSM87876", "GSM87880", "GSM87885", "GSM87894", "GSM87899", "GSM87904", "GSM87908", "GSM87913", "GSM87923", "GSM87927", "GSM87932", "GSM87937", "GSM87941", "GSM87946", "GSM87951", "GSM87955", "GSM87959" ], "type": "time", "id": "GDS2767_4" }, { "dataset_id": "GDS2767", "description": "12 h", "sample_id": [ "GSM87857", "GSM87862", "GSM87867", "GSM87872", "GSM87877", "GSM87881", "GSM87886", "GSM87890", "GSM87895", "GSM87900", "GSM87905", "GSM87909", "GSM87914", "GSM87916", "GSM87919", "GSM87928", "GSM87933", "GSM87942", "GSM87947", "GSM87952", "GSM87956", "GSM87960" ], "type": "time", "id": "GDS2767_5" }, { "dataset_id": "GDS2767", "description": "alcohol", "sample_id": [ "GSM87863", "GSM87864", "GSM87865", "GSM87866", "GSM87867", "GSM87887", "GSM87888", "GSM87889", "GSM87890", "GSM87896", "GSM87897", "GSM87898", "GSM87899", "GSM87900", "GSM87915", "GSM87916", "GSM87934", "GSM87935", "GSM87936", "GSM87937", "GSM87943", "GSM87944", "GSM87945", "GSM87946", "GSM87947" ], "type": "agent", "id": "GDS2767_6" }, { "dataset_id": "GDS2767", "description": "grape juice", "sample_id": [ "GSM87853", "GSM87854", "GSM87855", "GSM87856", "GSM87857", "GSM87878", "GSM87879", "GSM87880", "GSM87881", "GSM87906", "GSM87907", "GSM87908", "GSM87909", "GSM87920", "GSM87921", "GSM87922", "GSM87923", "GSM87924", "GSM87925", "GSM87926", "GSM87927", "GSM87928", "GSM87957", "GSM87958", "GSM87959", "GSM87960" ], "type": "agent", "id": "GDS2767_7" }, { "dataset_id": "GDS2767", "description": "red wine", "sample_id": [ "GSM87858", "GSM87859", "GSM87949", "GSM87950", "GSM87951", "GSM87952", "GSM87860", "GSM87861", "GSM87862", "GSM87882", "GSM87883", "GSM87884", "GSM87885", "GSM87886", "GSM87891", "GSM87892", "GSM87893", "GSM87894", "GSM87895", "GSM87917", "GSM87918", "GSM87919", "GSM87929", "GSM87930", "GSM87931", "GSM87932", "GSM87933", "GSM87948" ], "type": "agent", "id": "GDS2767_8" }, { "dataset_id": "GDS2767", "description": "water", "sample_id": [ "GSM87868", "GSM87869", "GSM87941", "GSM87942", "GSM87953", "GSM87954", "GSM87955", "GSM87956", "GSM87870", "GSM87871", "GSM87872", "GSM87873", "GSM87874", "GSM87875", "GSM87876", "GSM87877", "GSM87901", "GSM87902", "GSM87903", "GSM87904", "GSM87905", "GSM87910", "GSM87911", "GSM87912", "GSM87913", "GSM87914", "GSM87938", "GSM87939", "GSM87940" ], "type": "agent", "id": "GDS2767_9" }, { "dataset_id": "GDS2767", "description": "CJ", "sample_id": [ "GSM87853", "GSM87854", "GSM87855", "GSM87856", "GSM87857", "GSM87858", "GSM87859", "GSM87860", "GSM87861", "GSM87862", "GSM87863", "GSM87864", "GSM87865", "GSM87866", "GSM87867", "GSM87868", "GSM87869", "GSM87870", "GSM87871", "GSM87872" ], "type": "individual", "id": "GDS2767_10" }, { "dataset_id": "GDS2767", "description": "CM", "sample_id": [ "GSM87873", "GSM87874", "GSM87875", "GSM87876", "GSM87877", "GSM87878", "GSM87879", "GSM87880", "GSM87881", "GSM87882", "GSM87883", "GSM87884", "GSM87885", "GSM87886", "GSM87887", "GSM87888", "GSM87889", "GSM87890" ], "type": "individual", "id": "GDS2767_11" }, { "dataset_id": "GDS2767", "description": "IF", "sample_id": [ "GSM87891", "GSM87892", "GSM87893", "GSM87894", "GSM87895", "GSM87896", "GSM87897", "GSM87898", "GSM87899", "GSM87900", "GSM87901", "GSM87902", "GSM87903", "GSM87904", "GSM87905", "GSM87906", "GSM87907", "GSM87908", "GSM87909" ], "type": "individual", "id": "GDS2767_12" }, { "dataset_id": "GDS2767", "description": "JL", "sample_id": [ "GSM87910", "GSM87911", "GSM87912", "GSM87913", "GSM87914", "GSM87915", "GSM87916", "GSM87917", "GSM87918", "GSM87919", "GSM87920", "GSM87921", "GSM87922", "GSM87923" ], "type": "individual", "id": "GDS2767_13" }, { "dataset_id": "GDS2767", "description": "JR", "sample_id": [ "GSM87924", "GSM87925", "GSM87926", "GSM87927", "GSM87928", "GSM87929", "GSM87930", "GSM87931", "GSM87932", "GSM87933", "GSM87934", "GSM87935", "GSM87936", "GSM87937", "GSM87938", "GSM87939", "GSM87940", "GSM87941", "GSM87942" ], "type": "individual", "id": "GDS2767_14" }, { "dataset_id": "GDS2767", "description": "MB", "sample_id": [ "GSM87943", "GSM87944", "GSM87945", "GSM87946", "GSM87947", "GSM87948", "GSM87949", "GSM87950", "GSM87951", "GSM87952", "GSM87953", "GSM87954", "GSM87955", "GSM87956", "GSM87957", "GSM87958", "GSM87959", "GSM87960" ], "type": "individual", "id": "GDS2767_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2767", "version": 1.0, "instances": "108", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2767.tab", "compression": "gz" } ], [ [ "GDS2768.tab" ], { "title": "Escherichia coli biofilm development", "description": "Analysis of Escherichia coli K-12 biofilms up to 24 hours of culturing. Biofilm bacteria predominate in nutrient-sufficient ecosystems. Results provide insight into the molecular mechanisms underlying biofilm development.", "type": "Expression profiling by array", "pubmed_id": "17222132", "platform": "GPL199", "platform_organism": "Escherichia coli K-12", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7312", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE3905", "order": "none", "update_date": "Jun 18 2007", "subsets": [ { "dataset_id": "GDS2768", "description": "suspension", "sample_id": [ "GSM88916", "GSM88917", "GSM88918", "GSM88919" ], "type": "cell type", "id": "GDS2768_1" }, { "dataset_id": "GDS2768", "description": "biofilm", "sample_id": [ "GSM88912", "GSM88913", "GSM88914", "GSM88915" ], "type": "cell type", "id": "GDS2768_2" }, { "dataset_id": "GDS2768", "description": "4 h", "sample_id": [ "GSM88912", "GSM88916" ], "type": "time", "id": "GDS2768_3" }, { "dataset_id": "GDS2768", "description": "7 h", "sample_id": [ "GSM88913", "GSM88917" ], "type": "time", "id": "GDS2768_4" }, { "dataset_id": "GDS2768", "description": "15 h", "sample_id": [ "GSM88914", "GSM88918" ], "type": "time", "id": "GDS2768_5" }, { "dataset_id": "GDS2768", "description": "24 h", "sample_id": [ "GSM88915", "GSM88919" ], "type": "time", "id": "GDS2768_6" } ], "taxid": "562", "genes": 7103, "aggregation_function": "mean", "name": "GDS2768", "version": 1.0, "instances": "8", "variables": 7106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2768.tab", "compression": "gz" } ], [ [ "GDS2769.tab" ], { "title": "Non-coding roX1 and roX2 RNA deficiency effect on larvae", "description": "Analysis of third instar larvae lacking noncoding RNAs roX1 and roX2. The roX RNAs are components of the male-specific lethal (MSL) ribonucleoprotein complex, required for equalization of X:A expression levels in males. Results provide insight into the role of roX RNAs in X-chromosome expression.", "type": "Expression profiling by array", "pubmed_id": "17028315", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3990", "order": "none", "update_date": "Nov 09 2007", "subsets": [ { "dataset_id": "GDS2769", "description": "wild type", "sample_id": [ "GSM91133", "GSM91135", "GSM91138" ], "type": "genotype/variation", "id": "GDS2769_1" }, { "dataset_id": "GDS2769", "description": "roX1 roX2 mutant", "sample_id": [ "GSM91119", "GSM91121", "GSM91131" ], "type": "genotype/variation", "id": "GDS2769_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2769", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2769.tab", "compression": "gz" } ], [ [ "GDS2770.tab" ], { "title": "Estrogen effect on breast cancer cell line coexpressing estrogen receptors alpha and beta", "description": "Analysis of estrogen receptor (ER) alpha positive MCF-7 breast cancer cells following introduction of ERbeta and treatment with estrogen. The majority of breast cancers express both ERalpha and ERbeta. Results provide insight into the comodulatory effects of these two ERs.", "type": "Expression profiling by array", "pubmed_id": "16809442", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4006", "order": "none", "update_date": "Nov 09 2007", "subsets": [ { "dataset_id": "GDS2770", "description": "control", "sample_id": [ "GSM91260", "GSM91261", "GSM91264", "GSM91265", "GSM91268", "GSM91269" ], "type": "agent", "id": "GDS2770_1" }, { "dataset_id": "GDS2770", "description": "17beta-estradiol", "sample_id": [ "GSM91262", "GSM91263", "GSM91266", "GSM91267", "GSM91270", "GSM91271" ], "type": "agent", "id": "GDS2770_2" }, { "dataset_id": "GDS2770", "description": "empty adenovirus", "sample_id": [ "GSM91260", "GSM91261", "GSM91262", "GSM91263" ], "type": "infection", "id": "GDS2770_3" }, { "dataset_id": "GDS2770", "description": "AdERb low moi", "sample_id": [ "GSM91264", "GSM91265", "GSM91266", "GSM91267" ], "type": "infection", "id": "GDS2770_4" }, { "dataset_id": "GDS2770", "description": "AdERb high moi", "sample_id": [ "GSM91268", "GSM91269", "GSM91270", "GSM91271" ], "type": "infection", "id": "GDS2770_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2770", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2770.tab", "compression": "gz" } ], [ [ "GDS2771.tab" ], { "title": "Large airway epithelial cells from cigarette smokers with suspect lung cancer", "description": "Analysis of large airway epithelial cells from cigarette smokers without cancer, with cancer, and with suspect lung cancer. Results provide insight into the feasibility of using gene expression to detect early stage lung cancer in smokers.", "type": "Expression profiling by array", "pubmed_id": [ "17334370", "20375364" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "192", "value_type": "transformed count", "reference_series": "GSE4115", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2771", "description": "no cancer", "sample_id": [ "GSM93997", "GSM94077", "GSM94078", "GSM94079", "GSM94080", "GSM94081", "GSM94082", "GSM94083", "GSM94084", "GSM94085", "GSM94086", "GSM94087", "GSM94088", "GSM94089", "GSM94090", "GSM94091", "GSM94092", "GSM94093", "GSM94094", "GSM94095", "GSM94096", "GSM94097", "GSM94098", "GSM94099", "GSM94100", "GSM94101", "GSM94102", "GSM94103", "GSM94104", "GSM94105", "GSM94106", "GSM94107", "GSM94108", "GSM94109", "GSM94110", "GSM94111", "GSM94112", "GSM94113", "GSM94114", "GSM94115", "GSM94116", "GSM94117", "GSM94118", "GSM94119", "GSM94120", "GSM94121", "GSM94122", "GSM94123", "GSM94124", "GSM94125", "GSM94126", "GSM94127", "GSM94128", "GSM94129", "GSM94130", "GSM94131", "GSM94132", "GSM94133", "GSM94134", "GSM94135", "GSM94136", "GSM94137", "GSM94138", "GSM94139", "GSM94140", "GSM94141", "GSM94142", "GSM94143", "GSM94144", "GSM94145", "GSM94146", "GSM94147", "GSM94148", "GSM98785", "GSM98786", "GSM98787", "GSM98788", "GSM98789", "GSM98790", "GSM98791", "GSM98792", "GSM98793", "GSM98794", "GSM98795", "GSM98796", "GSM98797", "GSM98798", "GSM98799", "GSM98800", "GSM98801" ], "type": "disease state", "id": "GDS2771_1" }, { "dataset_id": "GDS2771", "description": "cancer", "sample_id": [ "GSM94019", "GSM94020", "GSM94021", "GSM94022", "GSM94023", "GSM94024", "GSM94025", "GSM94026", "GSM94027", "GSM94028", "GSM94029", "GSM94030", "GSM94031", "GSM94032", "GSM94033", "GSM94034", "GSM94035", "GSM94036", "GSM94037", "GSM94038", "GSM94039", "GSM94040", "GSM94041", "GSM94042", "GSM94043", "GSM94044", "GSM94045", "GSM94046", "GSM94047", "GSM94048", "GSM94049", "GSM94050", "GSM94051", "GSM94052", "GSM94053", "GSM94054", "GSM94055", "GSM94056", "GSM94057", "GSM94058", "GSM94059", "GSM94060", "GSM94061", "GSM94062", "GSM94063", "GSM94064", "GSM94065", "GSM94066", "GSM94067", "GSM94068", "GSM94069", "GSM94070", "GSM94071", "GSM94072", "GSM94073", "GSM94074", "GSM94075", "GSM94155", "GSM94156", "GSM94157", "GSM94160", "GSM94161", "GSM94162", "GSM94163", "GSM94164", "GSM94165", "GSM94166", "GSM94167", "GSM94168", "GSM94169", "GSM94170", "GSM94171", "GSM94172", "GSM94173", "GSM94174", "GSM94175", "GSM94176", "GSM94177", "GSM94178", "GSM98767", "GSM98768", "GSM98769", "GSM98770", "GSM98771", "GSM98772", "GSM98773", "GSM98774", "GSM98775", "GSM98776", "GSM98777", "GSM98778", "GSM98779", "GSM98780", "GSM98781", "GSM98782", "GSM98783", "GSM98784" ], "type": "disease state", "id": "GDS2771_2" }, { "dataset_id": "GDS2771", "description": "suspect cancer", "sample_id": [ "GSM98871", "GSM98872", "GSM98873", "GSM98874", "GSM98875" ], "type": "disease state", "id": "GDS2771_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2771", "version": 1.0, "instances": "192", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2771.tab", "compression": "gz" } ], [ [ "GDS2772.tab" ], { "title": "Sevoflurane and propofol effect on the heart during off-pump coronary artery bypass graft surgery", "description": "Analysis of atrial biopsies from patients receiving the anesthetic gas sevoflurane or the intravenous anesthetic propofol during off-pump coronary artery bypass graft surgery. Anesthetic gases protect against myocardial ischemia. Results provide insight into the basis of this protective effect.", "type": "Expression profiling by array", "pubmed_id": "17325502", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE4386", "order": "none", "update_date": "Nov 09 2007", "subsets": [ { "dataset_id": "GDS2772", "description": "baseline sevoflurane", "sample_id": [ "GSM99229", "GSM99252", "GSM99255", "GSM99258", "GSM99268", "GSM99280", "GSM99289", "GSM99293", "GSM99298", "GSM99305" ], "type": "agent", "id": "GDS2772_1" }, { "dataset_id": "GDS2772", "description": "baseline propofol", "sample_id": [ "GSM99239", "GSM99244", "GSM99247", "GSM99261", "GSM99274", "GSM99285", "GSM99291", "GSM99295", "GSM99301", "GSM99303" ], "type": "agent", "id": "GDS2772_2" }, { "dataset_id": "GDS2772", "description": "sevoflurane", "sample_id": [ "GSM99235", "GSM99253", "GSM99257", "GSM99259", "GSM99271", "GSM99282", "GSM99290", "GSM99294", "GSM99299", "GSM99306" ], "type": "agent", "id": "GDS2772_3" }, { "dataset_id": "GDS2772", "description": "propofol", "sample_id": [ "GSM99241", "GSM99246", "GSM99249", "GSM99265", "GSM99277", "GSM99287", "GSM99292", "GSM99296", "GSM99302", "GSM99304" ], "type": "agent", "id": "GDS2772_4" }, { "dataset_id": "GDS2772", "description": "H1", "sample_id": [ "GSM99229", "GSM99235" ], "type": "individual", "id": "GDS2772_5" }, { "dataset_id": "GDS2772", "description": "H2", "sample_id": [ "GSM99239", "GSM99241" ], "type": "individual", "id": "GDS2772_6" }, { "dataset_id": "GDS2772", "description": "H3", "sample_id": [ "GSM99244", "GSM99246" ], "type": "individual", "id": "GDS2772_7" }, { "dataset_id": "GDS2772", "description": "H4", "sample_id": [ "GSM99247", "GSM99249" ], "type": "individual", "id": "GDS2772_8" }, { "dataset_id": "GDS2772", "description": "H5", "sample_id": [ "GSM99252", "GSM99253" ], "type": "individual", "id": "GDS2772_9" }, { "dataset_id": "GDS2772", "description": "H6", "sample_id": [ "GSM99255", "GSM99257" ], "type": "individual", "id": "GDS2772_10" }, { "dataset_id": "GDS2772", "description": "H7", "sample_id": [ "GSM99258", "GSM99259" ], "type": "individual", "id": "GDS2772_11" }, { "dataset_id": "GDS2772", "description": "H8", "sample_id": [ "GSM99261", "GSM99265" ], "type": "individual", "id": "GDS2772_12" }, { "dataset_id": "GDS2772", "description": "H9", "sample_id": [ "GSM99268", "GSM99271" ], "type": "individual", "id": "GDS2772_13" }, { "dataset_id": "GDS2772", "description": "H10", "sample_id": [ "GSM99274", "GSM99277" ], "type": "individual", "id": "GDS2772_14" }, { "dataset_id": "GDS2772", "description": "H11", "sample_id": [ "GSM99280", "GSM99282" ], "type": "individual", "id": "GDS2772_15" }, { "dataset_id": "GDS2772", "description": "H12", "sample_id": [ "GSM99285", "GSM99287" ], "type": "individual", "id": "GDS2772_16" }, { "dataset_id": "GDS2772", "description": "H13", "sample_id": [ "GSM99289", "GSM99290" ], "type": "individual", "id": "GDS2772_17" }, { "dataset_id": "GDS2772", "description": "H14", "sample_id": [ "GSM99291", "GSM99292" ], "type": "individual", "id": "GDS2772_18" }, { "dataset_id": "GDS2772", "description": "H15", "sample_id": [ "GSM99293", "GSM99294" ], "type": "individual", "id": "GDS2772_19" }, { "dataset_id": "GDS2772", "description": "H16", "sample_id": [ "GSM99295", "GSM99296" ], "type": "individual", "id": "GDS2772_20" }, { "dataset_id": "GDS2772", "description": "H17", "sample_id": [ "GSM99298", "GSM99299" ], "type": "individual", "id": "GDS2772_21" }, { "dataset_id": "GDS2772", "description": "H18", "sample_id": [ "GSM99301", "GSM99302" ], "type": "individual", "id": "GDS2772_22" }, { "dataset_id": "GDS2772", "description": "H19", "sample_id": [ "GSM99303", "GSM99304" ], "type": "individual", "id": "GDS2772_23" }, { "dataset_id": "GDS2772", "description": "H20", "sample_id": [ "GSM99305", "GSM99306" ], "type": "individual", "id": "GDS2772_24" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2772", "version": 1.0, "instances": "40", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2772.tab", "compression": "gz" } ], [ [ "GDS2773.tab" ], { "title": "Endothelial cell response to chronic activation by tumor necrosis factor", "description": "Analysis of endothelial cells acutely activated by treatment with soluble tumor necrosis factor (TNF) or chronically activated by expression of an uncleavable form of the transmembrane TNF precursor. Results provide insight into the mechanisms mediating the effect of chronic endothelial activation.", "type": "Expression profiling by array", "pubmed_id": "17566077", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4518", "order": "none", "update_date": "Nov 09 2007", "subsets": [ { "dataset_id": "GDS2773", "description": "control", "sample_id": [ "GSM101397", "GSM101398", "GSM101399", "GSM101400" ], "type": "agent", "id": "GDS2773_1" }, { "dataset_id": "GDS2773", "description": "soluble TNF", "sample_id": [ "GSM101405", "GSM101406", "GSM101407", "GSM101408" ], "type": "agent", "id": "GDS2773_2" }, { "dataset_id": "GDS2773", "description": "transmembrane TNF", "sample_id": [ "GSM101401", "GSM101402", "GSM101403", "GSM101404" ], "type": "agent", "id": "GDS2773_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2773", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2773.tab", "compression": "gz" } ], [ [ "GDS2774.tab" ], { "title": "Transcription factor Nurr1 overexpression induced by depolarization effect on midbrain neurons in vitro", "description": "Analysis of cultured midbrain neurons enriched for dopaminergic neurons following Nurr1 overexpression induced by depolarization. Nurr1 is a transcription factor essential for the generation of midbrain dopaminergic neurons. Results provide insight into the molecular pathways regulated by Nurr1.", "type": "Expression profiling by array", "pubmed_id": "17506860", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE4551", "order": "none", "update_date": "Nov 13 2007", "subsets": [ { "dataset_id": "GDS2774", "description": "0.5 h control", "sample_id": [ "GSM101747", "GSM101748", "GSM101749" ], "type": "protocol", "id": "GDS2774_1" }, { "dataset_id": "GDS2774", "description": "2 h control", "sample_id": [ "GSM101750", "GSM101751", "GSM101752" ], "type": "protocol", "id": "GDS2774_2" }, { "dataset_id": "GDS2774", "description": "0.5 h post-depolarization", "sample_id": [ "GSM101753", "GSM101754", "GSM101755" ], "type": "protocol", "id": "GDS2774_3" }, { "dataset_id": "GDS2774", "description": "2 h post-depolariztion", "sample_id": [ "GSM101756", "GSM101757", "GSM101759" ], "type": "protocol", "id": "GDS2774_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2774", "version": 1.0, "instances": "12", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2774.tab", "compression": "gz" } ], [ [ "GDS2775.tab" ], { "title": "Nuclear factor I-A deficiency effect on brain development", "description": "Analysis of embryonic (E18) and postnatal (P16) brains of mutants lacking the transcription/replication protein nuclear factor I-A (NFI-A). NFI-A null mutants exhibit neurological defects. Results provide insight into mechanisms regulated by NFI-A during brain development.", "type": "Expression profiling by array", "pubmed_id": "17475010", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE4623", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2775", "description": "wild type", "sample_id": [ "GSM103422", "GSM103423", "GSM103424", "GSM103428", "GSM103429", "GSM103430" ], "type": "genotype/variation", "id": "GDS2775_1" }, { "dataset_id": "GDS2775", "description": "NFI-A null", "sample_id": [ "GSM103419", "GSM103420", "GSM103421", "GSM103425", "GSM103426", "GSM103427" ], "type": "genotype/variation", "id": "GDS2775_2" }, { "dataset_id": "GDS2775", "description": "E18", "sample_id": [ "GSM103419", "GSM103420", "GSM103421", "GSM103422", "GSM103423", "GSM103424" ], "type": "age", "id": "GDS2775_3" }, { "dataset_id": "GDS2775", "description": "P16", "sample_id": [ "GSM103425", "GSM103426", "GSM103427", "GSM103428", "GSM103429", "GSM103430" ], "type": "age", "id": "GDS2775_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2775", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2775.tab", "compression": "gz" } ], [ [ "GDS2777.tab" ], { "title": "Bexarotene effect on gemcitabine resistant non-small lung cancer cell line", "description": "Analysis of gemcitabine (Gem)-resistant non-small lung cancer Calu3 cells treated with bexarotene (Bex). Acquired drug resistance is a major obstacle in cancer therapy. Results provide insight into molecular mechanisms underlying the ability of bexarotene to overcome Gem-resistance in Calu3 cells.", "type": "Expression profiling by array", "pubmed_id": "17483357", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE6914", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2777", "description": "parental", "sample_id": [ "GSM159355", "GSM159356", "GSM159357", "GSM159358" ], "type": "cell line", "id": "GDS2777_1" }, { "dataset_id": "GDS2777", "description": "gemcitabine resistant derivative", "sample_id": [ "GSM159359", "GSM159360", "GSM159361", "GSM159362", "GSM159363", "GSM159364", "GSM159365", "GSM159366", "GSM159367", "GSM159368", "GSM159369", "GSM159370", "GSM159371", "GSM159372", "GSM159373", "GSM159374" ], "type": "cell line", "id": "GDS2777_2" }, { "dataset_id": "GDS2777", "description": "untreated", "sample_id": [ "GSM159355", "GSM159356", "GSM159357", "GSM159358" ], "type": "agent", "id": "GDS2777_3" }, { "dataset_id": "GDS2777", "description": "vehicle", "sample_id": [ "GSM159359", "GSM159360", "GSM159361", "GSM159362" ], "type": "agent", "id": "GDS2777_4" }, { "dataset_id": "GDS2777", "description": "bexarotene", "sample_id": [ "GSM159363", "GSM159364", "GSM159365", "GSM159366" ], "type": "agent", "id": "GDS2777_5" }, { "dataset_id": "GDS2777", "description": "gemcitabine", "sample_id": [ "GSM159367", "GSM159368", "GSM159369", "GSM159370" ], "type": "agent", "id": "GDS2777_6" }, { "dataset_id": "GDS2777", "description": "bexarotene and gemcitabine", "sample_id": [ "GSM159371", "GSM159372", "GSM159373", "GSM159374" ], "type": "agent", "id": "GDS2777_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2777", "version": 1.0, "instances": "20", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2777.tab", "compression": "gz" } ], [ [ "GDS2778.tab" ], { "title": "1,2,4-benzenetriol effect on peripheral blood mononuclear cells in vitro", "description": "Analysis of cultured peripheral blood mononuclear cells treated with the benzene metabolite 1,2,4-benzenetriol. Benzene is an air pollutant and carcinogen. Results provide insight into the molecular basis of benzene cytotoxicity.", "type": "Expression profiling by array", "pubmed_id": "17572062", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE7664", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2778", "description": "control", "sample_id": [ "GSM185545", "GSM185546", "GSM185547", "GSM185548", "GSM185549", "GSM185550", "GSM185551", "GSM185552" ], "type": "agent", "id": "GDS2778_1" }, { "dataset_id": "GDS2778", "description": "1,2,4-benzenetriol", "sample_id": [ "GSM185537", "GSM185538", "GSM185539", "GSM185540", "GSM185541", "GSM185542", "GSM185543", "GSM185544" ], "type": "agent", "id": "GDS2778_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2778", "version": 1.0, "instances": "16", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2778.tab", "compression": "gz" } ], [ [ "GDS2779.tab" ], { "title": "Lymphoblastoid cell lines from monozygotic twin pairs discordant for bipolar disorder", "description": "Analysis of lymphoblastoid cell lines derived from 3 monozygotic twin pairs discordant for bipolar disorder. Results provide insight into the molecular pathogenesis of bipolar disorder.", "type": "Expression profiling by array", "pubmed_id": "17440432", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7036", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2779", "description": "twin pair 1", "sample_id": [ "GSM162897", "GSM162898" ], "type": "other", "id": "GDS2779_1" }, { "dataset_id": "GDS2779", "description": "twin pair 2", "sample_id": [ "GSM162899", "GSM162900" ], "type": "other", "id": "GDS2779_2" }, { "dataset_id": "GDS2779", "description": "twin pair 3", "sample_id": [ "GSM162901", "GSM162903" ], "type": "other", "id": "GDS2779_3" }, { "dataset_id": "GDS2779", "description": "control", "sample_id": [ "GSM162898", "GSM162900", "GSM162903" ], "type": "disease state", "id": "GDS2779_4" }, { "dataset_id": "GDS2779", "description": "bipolar disorder", "sample_id": [ "GSM162897", "GSM162899", "GSM162901" ], "type": "disease state", "id": "GDS2779_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2779", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2779.tab", "compression": "gz" } ], [ [ "GDS278.tab" ], { "title": "Muscle response to acute resistance exercise", "description": "Trancriptionally and translationally-regulated gene expression underlying skeletal muscle hypertrophy induced by acute maximally activated eccentric contractions. Total RNA or polysomal RNA examined at one and six hours post contraction.", "type": "Expression profiling by array", "pubmed_id": "12433947", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE467", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS278", "description": "acute resistance exercise", "sample_id": [ "GSM5218", "GSM5219", "GSM5220", "GSM5221", "GSM5222", "GSM5223", "GSM5224", "GSM5225", "GSM5226", "GSM5227", "GSM5228", "GSM5229", "GSM5230", "GSM5231", "GSM5232", "GSM5233", "GSM5234", "GSM5235", "GSM5236", "GSM5237", "GSM5238", "GSM5239", "GSM5240", "GSM5241" ], "type": "protocol", "id": "GDS278_1" }, { "dataset_id": "GDS278", "description": "no exercise", "sample_id": [ "GSM5242", "GSM5243", "GSM5244", "GSM5245", "GSM5246", "GSM5247", "GSM5248", "GSM5249", "GSM5250", "GSM5251", "GSM5252", "GSM5253" ], "type": "protocol", "id": "GDS278_2" }, { "dataset_id": "GDS278", "description": "0 hour", "sample_id": [ "GSM5246", "GSM5247", "GSM5248", "GSM5249", "GSM5250", "GSM5251", "GSM5252", "GSM5253" ], "type": "time", "id": "GDS278_3" }, { "dataset_id": "GDS278", "description": "1 hour", "sample_id": [ "GSM5218", "GSM5219", "GSM5220", "GSM5221", "GSM5222", "GSM5223", "GSM5224", "GSM5225", "GSM5242", "GSM5243", "GSM5244", "GSM5245" ], "type": "time", "id": "GDS278_4" }, { "dataset_id": "GDS278", "description": "6 hour", "sample_id": [ "GSM5226", "GSM5227", "GSM5228", "GSM5229", "GSM5230", "GSM5231", "GSM5232", "GSM5233", "GSM5234", "GSM5235", "GSM5236", "GSM5237", "GSM5238", "GSM5239", "GSM5240", "GSM5241" ], "type": "time", "id": "GDS278_5" }, { "dataset_id": "GDS278", "description": "total RNA", "sample_id": [ "GSM5218", "GSM5219", "GSM5220", "GSM5221", "GSM5226", "GSM5227", "GSM5228", "GSM5229", "GSM5230", "GSM5231", "GSM5232", "GSM5233" ], "type": "specimen", "id": "GDS278_6" }, { "dataset_id": "GDS278", "description": "polysomal RNA", "sample_id": [ "GSM5222", "GSM5223", "GSM5224", "GSM5225", "GSM5234", "GSM5235", "GSM5236", "GSM5237", "GSM5238", "GSM5239", "GSM5240", "GSM5241", "GSM5242", "GSM5243", "GSM5244", "GSM5245", "GSM5246", "GSM5247", "GSM5248", "GSM5249", "GSM5250", "GSM5251", "GSM5252", "GSM5253" ], "type": "specimen", "id": "GDS278_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS278", "version": 1.0, "instances": "36", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS278.tab", "compression": "gz" } ], [ [ "GDS2780.tab" ], { "title": "Heavy metals effect on liver cell line", "description": "Analysis of liver carcinoma HepG2 cells exposed to various heavy metals. Results provide insight into the molecular basis of heavy metal cytotoxicity.", "type": "Expression profiling by array", "pubmed_id": "17547211", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE6907", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2780", "description": "control", "sample_id": [ "GSM159303", "GSM159305", "GSM159306" ], "type": "other", "id": "GDS2780_1" }, { "dataset_id": "GDS2780", "description": "model chemicals", "sample_id": [ "GSM159336", "GSM159337", "GSM159338", "GSM159339", "GSM159340", "GSM159341", "GSM159342", "GSM159343", "GSM159344" ], "type": "other", "id": "GDS2780_2" }, { "dataset_id": "GDS2780", "description": "heavy metals", "sample_id": [ "GSM159312", "GSM159314", "GSM159315", "GSM159316", "GSM159318", "GSM159319", "GSM159322", "GSM159324", "GSM159325", "GSM159327", "GSM159328", "GSM159329", "GSM159330", "GSM159331", "GSM159332", "GSM159333", "GSM159334", "GSM159335" ], "type": "other", "id": "GDS2780_3" }, { "dataset_id": "GDS2780", "description": "untreated", "sample_id": [ "GSM159303", "GSM159305", "GSM159306" ], "type": "agent", "id": "GDS2780_4" }, { "dataset_id": "GDS2780", "description": "2,3-dimethoxy-1,4-naphthoquinone", "sample_id": [ "GSM159336", "GSM159337", "GSM159338" ], "type": "agent", "id": "GDS2780_5" }, { "dataset_id": "GDS2780", "description": "phenol", "sample_id": [ "GSM159342", "GSM159343", "GSM159344" ], "type": "agent", "id": "GDS2780_6" }, { "dataset_id": "GDS2780", "description": "N-nitrosodimethylamine", "sample_id": [ "GSM159339", "GSM159340", "GSM159341" ], "type": "agent", "id": "GDS2780_7" }, { "dataset_id": "GDS2780", "description": "arsenic", "sample_id": [ "GSM159312", "GSM159314", "GSM159315" ], "type": "agent", "id": "GDS2780_8" }, { "dataset_id": "GDS2780", "description": "cadmium", "sample_id": [ "GSM159316", "GSM159318", "GSM159319" ], "type": "agent", "id": "GDS2780_9" }, { "dataset_id": "GDS2780", "description": "nickel", "sample_id": [ "GSM159322", "GSM159324", "GSM159325" ], "type": "agent", "id": "GDS2780_10" }, { "dataset_id": "GDS2780", "description": "antimony", "sample_id": [ "GSM159327", "GSM159328", "GSM159329" ], "type": "agent", "id": "GDS2780_11" }, { "dataset_id": "GDS2780", "description": "mercury", "sample_id": [ "GSM159330", "GSM159331", "GSM159332" ], "type": "agent", "id": "GDS2780_12" }, { "dataset_id": "GDS2780", "description": "chromium", "sample_id": [ "GSM159333", "GSM159334", "GSM159335" ], "type": "agent", "id": "GDS2780_13" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS2780", "version": 1.0, "instances": "30", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2780.tab", "compression": "gz" } ], [ [ "GDS2781.tab" ], { "title": "Nonsense mediated decay factor UPF1 depletion", "description": "Analysis of HeLa cells depleted for the nonsense-mediated decay (NMD)-keys factor UPF1. NMD represents a key mechanism to control the expression of wild-type and aberrant mRNAs. Results provide insight into the extent of gene regulation mediated by UPF1 activity.", "type": "Expression profiling by array", "pubmed_id": "17586820", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7009", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2781", "description": "control", "sample_id": [ "GSM161670", "GSM161671", "GSM161674" ], "type": "protocol", "id": "GDS2781_1" }, { "dataset_id": "GDS2781", "description": "UPF1 depletion", "sample_id": [ "GSM161678", "GSM161679", "GSM161686" ], "type": "protocol", "id": "GDS2781_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2781", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2781.tab", "compression": "gz" } ], [ [ "GDS2782.tab" ], { "title": "Androgen response element specific DNA-binding polyamide effect on dihydrotestoterone-stimulated prostate cell line", "description": "Analysis of DHT-stimulated LNCaP prostate cells treated with an androgen response (AR) element (ARE) specific DNA binding polyamide. Polyamide designed to target the sequence 5'-WGWWCW-3' and disrupt AR-mediated gene expression. Effects of the synthetic antiandrogen bicalutamide also examined.", "type": "Expression profiling by array", "pubmed_id": "17566103", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE7708", "order": "none", "update_date": "Apr 15 2008", "subsets": [ { "dataset_id": "GDS2782", "description": "untreated", "sample_id": [ "GSM187369", "GSM187370" ], "type": "agent", "id": "GDS2782_1" }, { "dataset_id": "GDS2782", "description": "dihydrotestoterone", "sample_id": [ "GSM187371", "GSM187372", "GSM187373" ], "type": "agent", "id": "GDS2782_2" }, { "dataset_id": "GDS2782", "description": "bicalutamide and dihydrotestoterone", "sample_id": [ "GSM187374", "GSM187375", "GSM187376" ], "type": "agent", "id": "GDS2782_3" }, { "dataset_id": "GDS2782", "description": "control polyamide an dihydrotestoterone", "sample_id": [ "GSM187377", "GSM187378", "GSM187379" ], "type": "agent", "id": "GDS2782_4" }, { "dataset_id": "GDS2782", "description": "WGWWCW polyamide and dihydrotestoterone", "sample_id": [ "GSM187380", "GSM187381", "GSM187382" ], "type": "agent", "id": "GDS2782_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2782", "version": 1.0, "instances": "14", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2782.tab", "compression": "gz" } ], [ [ "GDS2783.tab" ], { "title": "Progesterone effect on cultured neonatal ovaries", "description": "Analysis of cultured neonatal ovaries treated with progesterone for 2 days. In the early postnatal period, groups of oocytes break down to form primordial follicles. This process is called follicle assembly. Results provide insight into the role of progesterone in follicle assembly.", "type": "Expression profiling by array", "pubmed_id": "17127748", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8238", "order": "none", "update_date": "Jun 25 2007", "subsets": [ { "dataset_id": "GDS2783", "description": "control", "sample_id": [ "GSM203966", "GSM203967" ], "type": "agent", "id": "GDS2783_1" }, { "dataset_id": "GDS2783", "description": "progesterone", "sample_id": [ "GSM203968", "GSM203969" ], "type": "agent", "id": "GDS2783_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2783", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2783.tab", "compression": "gz" } ], [ [ "GDS2784.tab" ], { "title": "Survey of various adult tissues", "description": "Analysis of eight distinct adult tissues in a model organism. Two larval tissues and whole organism also examined. Results provide insight into the degree of tissue specific gene expression at the adult stage.", "type": "Expression profiling by array", "pubmed_id": "17534367", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE7763", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2784", "description": "larva", "sample_id": [ "GSM188092", "GSM188093", "GSM188094", "GSM188095", "GSM188100", "GSM188101", "GSM188102", "GSM188103" ], "type": "development stage", "id": "GDS2784_1" }, { "dataset_id": "GDS2784", "description": "adult", "sample_id": [ "GSM188072", "GSM188073", "GSM188074", "GSM188075", "GSM188076", "GSM188077", "GSM188078", "GSM188079", "GSM188080", "GSM188081", "GSM188082", "GSM188083", "GSM188084", "GSM188085", "GSM188086", "GSM188087", "GSM188088", "GSM188089", "GSM188090", "GSM188091", "GSM188096", "GSM188097", "GSM188098", "GSM188099", "GSM188104", "GSM188105", "GSM188106", "GSM188107", "GSM188108", "GSM188109", "GSM188110", "GSM188111", "GSM188112", "GSM188113", "GSM188114", "GSM188115" ], "type": "development stage", "id": "GDS2784_2" }, { "dataset_id": "GDS2784", "description": "hind gut", "sample_id": [ "GSM188072", "GSM188073", "GSM188074", "GSM188075" ], "type": "tissue", "id": "GDS2784_3" }, { "dataset_id": "GDS2784", "description": "mid gut", "sample_id": [ "GSM188076", "GSM188077", "GSM188078", "GSM188079" ], "type": "tissue", "id": "GDS2784_4" }, { "dataset_id": "GDS2784", "description": "accessory gland", "sample_id": [ "GSM188080", "GSM188081", "GSM188082", "GSM188083" ], "type": "tissue", "id": "GDS2784_5" }, { "dataset_id": "GDS2784", "description": "brain", "sample_id": [ "GSM188084", "GSM188085", "GSM188086", "GSM188087" ], "type": "tissue", "id": "GDS2784_6" }, { "dataset_id": "GDS2784", "description": "crops", "sample_id": [ "GSM188088", "GSM188089", "GSM188090", "GSM188091" ], "type": "tissue", "id": "GDS2784_7" }, { "dataset_id": "GDS2784", "description": "fat body", "sample_id": [ "GSM188092", "GSM188093", "GSM188094", "GSM188095" ], "type": "tissue", "id": "GDS2784_8" }, { "dataset_id": "GDS2784", "description": "head", "sample_id": [ "GSM188096", "GSM188097", "GSM188098", "GSM188099" ], "type": "tissue", "id": "GDS2784_9" }, { "dataset_id": "GDS2784", "description": "tubule", "sample_id": [ "GSM188100", "GSM188101", "GSM188102", "GSM188103" ], "type": "tissue", "id": "GDS2784_10" }, { "dataset_id": "GDS2784", "description": "ovary", "sample_id": [ "GSM188104", "GSM188105", "GSM188106", "GSM188107" ], "type": "tissue", "id": "GDS2784_11" }, { "dataset_id": "GDS2784", "description": "testes", "sample_id": [ "GSM188108", "GSM188109", "GSM188110", "GSM188111" ], "type": "tissue", "id": "GDS2784_12" }, { "dataset_id": "GDS2784", "description": "whole animal", "sample_id": [ "GSM188112", "GSM188113", "GSM188114", "GSM188115" ], "type": "tissue", "id": "GDS2784_13" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2784", "version": 1.0, "instances": "44", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2784.tab", "compression": "gz" } ], [ [ "GDS2785.tab" ], { "title": "Ovarian cancer tumors after neo-adjuvant chemotherapy", "description": "Analysis of malignant ovarian cancer tumors from patients receiving neo-adjuvant chemotherapy. Ovarian adenomas and untreated ovarian carcinomas also examined. Results used to define gene expression signatures associated with clinical responses to chemotherapy.", "type": "Expression profiling by array", "pubmed_id": "17505532", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "transformed count", "reference_series": "GSE7463", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2785", "description": "untreated", "sample_id": [ "GSM180626", "GSM180627", "GSM180628", "GSM180629", "GSM180630", "GSM180631", "GSM180632", "GSM180633", "GSM180634", "GSM180635", "GSM180636", "GSM180637", "GSM180638", "GSM180639", "GSM180640", "GSM180641", "GSM180642", "GSM180643", "GSM180644" ], "type": "protocol", "id": "GDS2785_1" }, { "dataset_id": "GDS2785", "description": "chemotherapy", "sample_id": [ "GSM180645", "GSM180646", "GSM180647", "GSM180648", "GSM180649", "GSM180650", "GSM180651", "GSM180652", "GSM180653", "GSM180654", "GSM180655", "GSM180656", "GSM180657", "GSM180658", "GSM180659", "GSM180660", "GSM180661", "GSM180662", "GSM180663", "GSM180664", "GSM180665", "GSM180666", "GSM180667", "GSM180668" ], "type": "protocol", "id": "GDS2785_2" }, { "dataset_id": "GDS2785", "description": "adenoma", "sample_id": [ "GSM180626", "GSM180627", "GSM180628", "GSM180629", "GSM180630", "GSM180631", "GSM180632", "GSM180633", "GSM180634", "GSM180635" ], "type": "disease state", "id": "GDS2785_3" }, { "dataset_id": "GDS2785", "description": "carcinoma", "sample_id": [ "GSM180636", "GSM180637", "GSM180638", "GSM180639", "GSM180640", "GSM180641", "GSM180642", "GSM180643", "GSM180644", "GSM180645", "GSM180646", "GSM180647", "GSM180648", "GSM180649", "GSM180650", "GSM180651", "GSM180652", "GSM180653", "GSM180654", "GSM180655", "GSM180656", "GSM180657", "GSM180658", "GSM180659", "GSM180660", "GSM180661", "GSM180662", "GSM180663", "GSM180664", "GSM180665", "GSM180666", "GSM180667", "GSM180668" ], "type": "disease state", "id": "GDS2785_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2785", "version": 1.0, "instances": "43", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2785.tab", "compression": "gz" } ], [ [ "GDS2786.tab" ], { "title": "Embryonic motor neurons", "description": "Analysis of embryonic motor neurons marked with an unc-4::GFP reporter transgene. UNC-4 is a homoedomain transcription factor expressed in 13 embryonic motor neurons. Results contribute to a comprehensive picture of gene expression in a subset of motor neurons.", "type": "Expression profiling by array", "pubmed_id": "15780142", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE8159", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2786", "description": "reference", "sample_id": [ "GSM201989", "GSM201990", "GSM201991", "GSM201992" ], "type": "cell type", "id": "GDS2786_1" }, { "dataset_id": "GDS2786", "description": "motor neuron", "sample_id": [ "GSM201993", "GSM201994", "GSM201995" ], "type": "cell type", "id": "GDS2786_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS2786", "version": 1.0, "instances": "7", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2786.tab", "compression": "gz" } ], [ [ "GDS2787.tab" ], { "title": "LIM-only protein 4 induction effect on breast cancer cell line (HG-U133A)", "description": "Analysis of breast cancer MCF-7 cells following the induction of expression of nuclear LIM-only protein 4 (LMO4). LMO4 is upregulated in breast cancer. Results provide insight into the role of LMO4 in promoting tumor formation.", "type": "Expression profiling by array", "pubmed_id": "17452977", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7382", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2787", "description": "baseline", "sample_id": [ "GSM177577", "GSM177578", "GSM177579" ], "type": "protocol", "id": "GDS2787_1" }, { "dataset_id": "GDS2787", "description": "LMO4 induction", "sample_id": [ "GSM177580", "GSM177581", "GSM177582" ], "type": "protocol", "id": "GDS2787_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2787", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2787.tab", "compression": "gz" } ], [ [ "GDS2788.tab" ], { "title": "LIM-only protein 4 induction effect on breast cancer cell line (HG-U133B)", "description": "Analysis of breast cancer MCF-7 cells following the induction of expression of nuclear LIM-only protein 4 (LMO4). LMO4 is upregulated in breast cancer. Results provide insight into the role of LMO4 in promoting tumor formation.", "type": "Expression profiling by array", "pubmed_id": "17452977", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7382", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2788", "description": "baseline", "sample_id": [ "GSM177583", "GSM177584", "GSM177585" ], "type": "protocol", "id": "GDS2788_1" }, { "dataset_id": "GDS2788", "description": "LMO4 induction", "sample_id": [ "GSM177586", "GSM177587", "GSM177588" ], "type": "protocol", "id": "GDS2788_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2788", "version": 1.0, "instances": "6", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2788.tab", "compression": "gz" } ], [ [ "GDS2789.tab" ], { "title": "LIM homeobox protein cofactor dominant negative form effect on breast cancer cell line", "description": "Analysis of breast cancer MCF-7 cells after the induction of expression of a dominant negative form of the cofactor of LIM domains (CLIM), a co-regulator of the nuclear LIM only protein 4 (LMO4). LMO4 is upregulated in breast cancer. Results provide insight into the role of LMO4 in tumor formation.", "type": "Expression profiling by array", "pubmed_id": "17452977", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7382", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2789", "description": "baseline", "sample_id": [ "GSM177589", "GSM177590", "GSM177591" ], "type": "protocol", "id": "GDS2789_1" }, { "dataset_id": "GDS2789", "description": "dominant negative CLIM induction", "sample_id": [ "GSM177592", "GSM177593", "GSM177594" ], "type": "protocol", "id": "GDS2789_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2789", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2789.tab", "compression": "gz" } ], [ [ "GDS279.tab" ], { "title": "Diet induced changes in liver", "description": "Examination of gene expression profiles from liver of C57BL/6 wild type mice and LDL receptor deficient mice fed on either a low fat diet or a high fat, western-style diet for 12 weeks.", "type": "Expression profiling by array", "pubmed_id": "15238619", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE363", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS279", "description": "high fat diet", "sample_id": [ "GSM5403", "GSM5404", "GSM5405", "GSM5409", "GSM5410", "GSM5411" ], "type": "protocol", "id": "GDS279_1" }, { "dataset_id": "GDS279", "description": "low fat diet", "sample_id": [ "GSM5406", "GSM5407", "GSM5408", "GSM5412", "GSM5413", "GSM5414" ], "type": "protocol", "id": "GDS279_2" }, { "dataset_id": "GDS279", "description": "C57BL/6 wild type", "sample_id": [ "GSM5403", "GSM5404", "GSM5405", "GSM5406", "GSM5407", "GSM5408" ], "type": "strain", "id": "GDS279_3" }, { "dataset_id": "GDS279", "description": "LDL receptor deficient mutant", "sample_id": [ "GSM5409", "GSM5410", "GSM5411", "GSM5412", "GSM5413", "GSM5414" ], "type": "strain", "id": "GDS279_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS279", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS279.tab", "compression": "gz" } ], [ [ "GDS2790.tab" ], { "title": "Skeletal muscle response to insulin infusion (HuGeneFL)", "description": "Analysis of skeletal muscles from non-diabetics after a 3 hour infusion of insulin. Glucose uptake by skeletal muscles in response to insulin is impaired in type 2 diabetes. Results provide insight into the molecular mechanisms regulating glucose homeostasis in response to insulin.", "type": "Expression profiling by array", "pubmed_id": "17472435", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7146", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2790", "description": "baseline", "sample_id": [ "GSM172150", "GSM172156", "GSM172159", "GSM172161", "GSM172163", "GSM172166" ], "type": "agent", "id": "GDS2790_1" }, { "dataset_id": "GDS2790", "description": "insulin", "sample_id": [ "GSM172154", "GSM172158", "GSM172160", "GSM172162", "GSM172165", "GSM172167" ], "type": "agent", "id": "GDS2790_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS2790", "version": 1.0, "instances": "12", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2790.tab", "compression": "gz" } ], [ [ "GDS2791.tab" ], { "title": "Skeletal muscle response to insulin infusion (HG-U133A)", "description": "Analysis of skeletal muscles from non-diabetics after a 2 hour infusion of insulin. Glucose uptake by skeletal muscles in response to insulin is impaired in type 2 diabetes. Results provide insight into the molecular mechanisms regulating glucose homeostasis in response to insulin.", "type": "Expression profiling by array", "pubmed_id": "17472435", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7146", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2791", "description": "baseline", "sample_id": [ "GSM172123", "GSM172129", "GSM172131", "GSM172133", "GSM172136", "GSM172140" ], "type": "agent", "id": "GDS2791_1" }, { "dataset_id": "GDS2791", "description": "insulin", "sample_id": [ "GSM172125", "GSM172130", "GSM172132", "GSM172134", "GSM172138", "GSM172142" ], "type": "agent", "id": "GDS2791_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2791", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2791.tab", "compression": "gz" } ], [ [ "GDS2794.tab" ], { "title": "T-cell acute lymphoblastic leukemia cell line response to Notch receptor inhibition", "description": "Analysis of T-cell acute lymphoblast leukemia (T-ALL) MOLT4 cells following gamma-secretase inhibitor (GSI) DAPT treatment. Gamma-secretase activity is required for Notch 1 receptor signaling. Results provide insight into the role of Notch signaling in T-ALL development.", "type": "Expression profiling by array", "pubmed_id": "17560996", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6495", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2794", "description": "control", "sample_id": [ "GSM149395", "GSM149396", "GSM149397" ], "type": "protocol", "id": "GDS2794_1" }, { "dataset_id": "GDS2794", "description": "notch inhibition", "sample_id": [ "GSM149398", "GSM149399", "GSM149400" ], "type": "protocol", "id": "GDS2794_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2794", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2794.tab", "compression": "gz" } ], [ [ "GDS2795.tab" ], { "title": "Alzheimer's disease: neurofibrillary tangles", "description": "Analysis of entorhinal cortex neurons containing neurofibrillary tangles (NFT) from 10 mid-stage Alzheimer's disease (AD) patients. Comparison with histopathologically normal neurons from the same patients and brain region. Results provide insight into the formation of NFTs in AD.", "type": "Expression profiling by array", "pubmed_id": "16242812", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE4757", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2795", "description": "normal", "sample_id": [ "GSM107522", "GSM107524", "GSM107526", "GSM107528", "GSM107530", "GSM107532", "GSM107534", "GSM107536", "GSM107538", "GSM107540" ], "type": "disease state", "id": "GDS2795_1" }, { "dataset_id": "GDS2795", "description": "neurofibrillary tangle", "sample_id": [ "GSM107523", "GSM107525", "GSM107527", "GSM107529", "GSM107531", "GSM107533", "GSM107535", "GSM107537", "GSM107539", "GSM107541" ], "type": "disease state", "id": "GDS2795_2" }, { "dataset_id": "GDS2795", "description": "patient 1", "sample_id": [ "GSM107522", "GSM107523" ], "type": "individual", "id": "GDS2795_3" }, { "dataset_id": "GDS2795", "description": "patient 2", "sample_id": [ "GSM107524", "GSM107525" ], "type": "individual", "id": "GDS2795_4" }, { "dataset_id": "GDS2795", "description": "patient 3", "sample_id": [ "GSM107526", "GSM107527" ], "type": "individual", "id": "GDS2795_5" }, { "dataset_id": "GDS2795", "description": "patient 4", "sample_id": [ "GSM107528", "GSM107529" ], "type": "individual", "id": "GDS2795_6" }, { "dataset_id": "GDS2795", "description": "patient 5", "sample_id": [ "GSM107530", "GSM107531" ], "type": "individual", "id": "GDS2795_7" }, { "dataset_id": "GDS2795", "description": "patient 6", "sample_id": [ "GSM107532", "GSM107533" ], "type": "individual", "id": "GDS2795_8" }, { "dataset_id": "GDS2795", "description": "patient 7", "sample_id": [ "GSM107534", "GSM107535" ], "type": "individual", "id": "GDS2795_9" }, { "dataset_id": "GDS2795", "description": "patient 8", "sample_id": [ "GSM107536", "GSM107537" ], "type": "individual", "id": "GDS2795_10" }, { "dataset_id": "GDS2795", "description": "patient 9", "sample_id": [ "GSM107538", "GSM107539" ], "type": "individual", "id": "GDS2795_11" }, { "dataset_id": "GDS2795", "description": "patient 10", "sample_id": [ "GSM107540", "GSM107541" ], "type": "individual", "id": "GDS2795_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2795", "version": 1.0, "instances": "20", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2795.tab", "compression": "gz" } ], [ [ "GDS280.tab" ], { "title": "Cytokine treatment effect on liver", "description": "Liver mRNA profiles following intraperitoneal cytokine injection. Strains interferon gamma -/-, albumin-cre(-) Socs3(w/fl) and albumin-cre(+) Socs3(-/fl) injected with either PBS, interferon gamma, or interleukin 6, and liver examined at 4 hours.", "type": "Expression profiling by array", "pubmed_id": "12754505", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE369", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS280", "description": "interferon gamma -/-", "sample_id": [ "GSM5951", "GSM5952", "GSM5953", "GSM5954" ], "type": "strain", "id": "GDS280_1" }, { "dataset_id": "GDS280", "description": "albumin-cre(+) Socs3 (-/fl)", "sample_id": [ "GSM5950", "GSM5955", "GSM5956", "GSM5957" ], "type": "strain", "id": "GDS280_2" }, { "dataset_id": "GDS280", "description": "albumin-cre(-) Socs3 (w/fl)", "sample_id": [ "GSM5958", "GSM5959", "GSM5960", "GSM5961" ], "type": "strain", "id": "GDS280_3" }, { "dataset_id": "GDS280", "description": "interferon gamma", "sample_id": [ "GSM5951", "GSM5952" ], "type": "agent", "id": "GDS280_4" }, { "dataset_id": "GDS280", "description": "interleukin 6", "sample_id": [ "GSM5955", "GSM5956", "GSM5958", "GSM5959" ], "type": "agent", "id": "GDS280_5" }, { "dataset_id": "GDS280", "description": "PBS", "sample_id": [ "GSM5950", "GSM5953", "GSM5954", "GSM5957", "GSM5960", "GSM5961" ], "type": "agent", "id": "GDS280_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS280", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS280.tab", "compression": "gz" } ], [ [ "GDS2802.tab" ], { "title": "Dexamethasone effect on fetal chondrocytes in vitro: time course", "description": "Analysis of primary cultured fetal chondrocytes treated with pharmacological doses of dexamethasone (DEX) for 6 and 24 hours. DEX is a synthetic glucorticoid (GC) receptor agonist. Results provide insight into the effects of pharmacological GC on chondrocytes.", "type": "Expression profiling by array", "pubmed_id": "17603917", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7683", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2802", "description": "dexamethasone", "sample_id": [ "GSM185887", "GSM185890", "GSM185891", "GSM185924", "GSM185964", "GSM185976" ], "type": "agent", "id": "GDS2802_1" }, { "dataset_id": "GDS2802", "description": "control", "sample_id": [ "GSM185888", "GSM185889", "GSM185892", "GSM185893", "GSM185923", "GSM185977" ], "type": "agent", "id": "GDS2802_2" }, { "dataset_id": "GDS2802", "description": "6 h", "sample_id": [ "GSM185889", "GSM185923", "GSM185924", "GSM185964", "GSM185976", "GSM185977" ], "type": "time", "id": "GDS2802_3" }, { "dataset_id": "GDS2802", "description": "24 h", "sample_id": [ "GSM185887", "GSM185888", "GSM185890", "GSM185891", "GSM185892", "GSM185893" ], "type": "time", "id": "GDS2802_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2802", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2802.tab", "compression": "gz" } ], [ [ "GDS2803.tab" ], { "title": "Fluoxetine effect on the hippocampus", "description": "Analysis of hippocampi from DBA/2J males chronically treated with the antidepressant (AD) fluoxetine (Flx). ADs promote the proliferation and survival of neurons in the adult hippocampus. Results provide insight into the molecular basis of the neuronal and behavioral responses to Flx treatment.", "type": "Expression profiling by array", "pubmed_id": "17609676", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6476", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2803", "description": "control", "sample_id": [ "GSM148900", "GSM148901" ], "type": "agent", "id": "GDS2803_1" }, { "dataset_id": "GDS2803", "description": "fluoxetine", "sample_id": [ "GSM148902", "GSM148903" ], "type": "agent", "id": "GDS2803_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2803", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2803.tab", "compression": "gz" } ], [ [ "GDS2804.tab" ], { "title": "Quiescent stb3 null mutant response to glucose", "description": "Analysis of the response of quiescent stb3 null cells to glucose. STB3 encodes a protein that binds to the Ribosomal RNA Processing Element, a DNA sequence motif that regulates genes needed for growth. Results provide insight into Stb3\u2019s role during the transition from quiescence to rapid growth.", "type": "Expression profiling by array", "pubmed_id": "17616518", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE8379", "order": "none", "update_date": "Apr 16 2008", "subsets": [ { "dataset_id": "GDS2804", "description": "wild type", "sample_id": [ "GSM207569", "GSM207570", "GSM207571", "GSM207572" ], "type": "genotype/variation", "id": "GDS2804_1" }, { "dataset_id": "GDS2804", "description": "stb3 null", "sample_id": [ "GSM207573", "GSM207574", "GSM207575", "GSM207576" ], "type": "genotype/variation", "id": "GDS2804_2" }, { "dataset_id": "GDS2804", "description": "control", "sample_id": [ "GSM207569", "GSM207570", "GSM207573", "GSM207574" ], "type": "growth protocol", "id": "GDS2804_3" }, { "dataset_id": "GDS2804", "description": "glucose", "sample_id": [ "GSM207571", "GSM207572", "GSM207575", "GSM207576" ], "type": "growth protocol", "id": "GDS2804_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2804", "version": 1.0, "instances": "8", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2804.tab", "compression": "gz" } ], [ [ "GDS2805.tab" ], { "title": "Serum response factor deficient B cells", "description": "Analysis of IgM+ IgD+ B cells lacking the Serum response factor (SRF) gene. SRF is a MADS-box transcription factor that is essential in embryonic development and in neuron and muscle cell function. Results provide insight into the role of SRF in lymphocyte development.", "type": "Expression profiling by array", "pubmed_id": "17591768", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7412", "order": "none", "update_date": "Apr 17 2008", "subsets": [ { "dataset_id": "GDS2805", "description": "wild type", "sample_id": [ "GSM179064", "GSM179066" ], "type": "genotype/variation", "id": "GDS2805_1" }, { "dataset_id": "GDS2805", "description": "srf deficient", "sample_id": [ "GSM179065", "GSM179067" ], "type": "genotype/variation", "id": "GDS2805_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2805", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2805.tab", "compression": "gz" } ], [ [ "GDS2808.tab" ], { "title": "Sepsis: neutrophils", "description": "Analysis of neutrophils from critically ill patients with sepsis. Results used to define a gene expression signature for sepsis and provides insight into the host response to sepsis.", "type": "Expression profiling by array", "pubmed_id": "17575094", "platform": "GPL4274", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "18664", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "94", "value_type": "log ratio", "reference_series": "GSE5772", "order": "none", "update_date": "Jul 11 2007", "subsets": [ { "dataset_id": "GDS2808", "description": "control", "sample_id": [ "GSM134895", "GSM134896", "GSM134897", "GSM134898", "GSM134900", "GSM134903", "GSM134905", "GSM134907", "GSM134940", "GSM135015", "GSM135016", "GSM135017", "GSM135018", "GSM135657", "GSM135659", "GSM135674", "GSM135678", "GSM135683", "GSM135685", "GSM135686", "GSM135691", "GSM135699", "GSM135701" ], "type": "disease state", "id": "GDS2808_1" }, { "dataset_id": "GDS2808", "description": "sepsis", "sample_id": [ "GSM135019", "GSM135020", "GSM135021", "GSM135022", "GSM135023", "GSM135024", "GSM135025", "GSM135026", "GSM135029", "GSM135031", "GSM135033", "GSM135042", "GSM135045", "GSM135051", "GSM135057", "GSM135060", "GSM135068", "GSM135071", "GSM135072", "GSM135078", "GSM135159", "GSM135163", "GSM135166", "GSM135168", "GSM135220", "GSM135223", "GSM135224", "GSM135228", "GSM135262", "GSM135263", "GSM135279", "GSM135655", "GSM135656", "GSM135658", "GSM135660", "GSM135661", "GSM135662", "GSM135663", "GSM135664", "GSM135665", "GSM135666", "GSM135667", "GSM135668", "GSM135669", "GSM135670", "GSM135671", "GSM135672", "GSM135673", "GSM135675", "GSM135676", "GSM135677", "GSM135679", "GSM135680", "GSM135681", "GSM135682", "GSM135684", "GSM135687", "GSM135688", "GSM135689", "GSM135690", "GSM135692", "GSM135693", "GSM135694", "GSM135695", "GSM135696", "GSM135697", "GSM135698", "GSM135700", "GSM135702", "GSM135703", "GSM135704" ], "type": "disease state", "id": "GDS2808_2" }, { "dataset_id": "GDS2808", "description": "training set", "sample_id": [ "GSM134895", "GSM134896", "GSM134897", "GSM134898", "GSM134900", "GSM134903", "GSM134905", "GSM134907", "GSM134940", "GSM135015", "GSM135016", "GSM135017", "GSM135018", "GSM135019", "GSM135020", "GSM135021", "GSM135022", "GSM135023", "GSM135024", "GSM135025", "GSM135026", "GSM135029", "GSM135031", "GSM135033", "GSM135042", "GSM135045", "GSM135051", "GSM135057", "GSM135060", "GSM135068", "GSM135071", "GSM135072", "GSM135078", "GSM135159", "GSM135163", "GSM135166", "GSM135168", "GSM135220", "GSM135223", "GSM135224", "GSM135228", "GSM135262", "GSM135263", "GSM135279" ], "type": "protocol", "id": "GDS2808_3" }, { "dataset_id": "GDS2808", "description": "validation set", "sample_id": [ "GSM135655", "GSM135656", "GSM135657", "GSM135658", "GSM135659", "GSM135660", "GSM135661", "GSM135662", "GSM135663", "GSM135664", "GSM135665", "GSM135666", "GSM135667", "GSM135668", "GSM135669", "GSM135670", "GSM135671", "GSM135672", "GSM135673", "GSM135674", "GSM135675", "GSM135676", "GSM135677", "GSM135678", "GSM135679", "GSM135680", "GSM135681", "GSM135682", "GSM135683", "GSM135684", "GSM135685", "GSM135686", "GSM135687", "GSM135688", "GSM135689", "GSM135690", "GSM135691", "GSM135692", "GSM135693", "GSM135694", "GSM135695", "GSM135696", "GSM135697", "GSM135698", "GSM135699", "GSM135700", "GSM135701", "GSM135702", "GSM135703", "GSM135704" ], "type": "protocol", "id": "GDS2808_4" } ], "taxid": "9606", "genes": 17118, "aggregation_function": "mean", "name": "GDS2808", "version": 1.0, "instances": "94", "variables": 17121, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2808.tab", "compression": "gz" } ], [ [ "GDS2809.tab" ], { "title": "Knee osteoarthritis model: chondrocytes", "description": "Analysis of articular condrocytes from osteoarthritic knees of Sprague-Dawley males. Osteoarthritis (OA) induced by surgery. Results provide insight into the pathogenesis of OA.", "type": "Expression profiling by array", "pubmed_id": "17530714", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE8077", "order": "none", "update_date": "Apr 17 2008", "subsets": [ { "dataset_id": "GDS2809", "description": "sham", "sample_id": [ "GSM200584", "GSM200593", "GSM200594", "GSM200595", "GSM200596" ], "type": "protocol", "id": "GDS2809_1" }, { "dataset_id": "GDS2809", "description": "normal contralateral", "sample_id": [ "GSM199974", "GSM200589", "GSM200590", "GSM200591", "GSM200592" ], "type": "protocol", "id": "GDS2809_2" }, { "dataset_id": "GDS2809", "description": "osteoarthritic ipsilateral", "sample_id": [ "GSM199973", "GSM200585", "GSM200586", "GSM200587", "GSM200588" ], "type": "protocol", "id": "GDS2809_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2809", "version": 1.0, "instances": "15", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2809.tab", "compression": "gz" } ], [ [ "GDS281.tab" ], { "title": "Heat shock, kin82 mutant", "description": "Temporal analysis of wild type and kin82 mutant strains after heat shock from 25\u00b0C to 37\u00b0C. Samples collected at several time points up to 1 hour.", "type": "Expression profiling by array", "pubmed_id": "12740579", "platform": "GPL287", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5993", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE406", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS281", "description": "wild type", "sample_id": [ "GSM6004", "GSM6006", "GSM6007", "GSM6008", "GSM6009" ], "type": "strain", "id": "GDS281_1" }, { "dataset_id": "GDS281", "description": "kin82 mutant", "sample_id": [ "GSM6005", "GSM6010", "GSM6011", "GSM6012", "GSM6013" ], "type": "strain", "id": "GDS281_2" }, { "dataset_id": "GDS281", "description": "0 minute", "sample_id": [ "GSM6004", "GSM6010" ], "type": "time", "id": "GDS281_3" }, { "dataset_id": "GDS281", "description": "5 minute", "sample_id": [ "GSM6006", "GSM6011" ], "type": "time", "id": "GDS281_4" }, { "dataset_id": "GDS281", "description": "15 minute", "sample_id": [ "GSM6007", "GSM6012" ], "type": "time", "id": "GDS281_5" }, { "dataset_id": "GDS281", "description": "30 minute", "sample_id": [ "GSM6008", "GSM6013" ], "type": "time", "id": "GDS281_6" }, { "dataset_id": "GDS281", "description": "60 minute", "sample_id": [ "GSM6005", "GSM6009" ], "type": "time", "id": "GDS281_7" } ], "taxid": "4932", "genes": 5967, "aggregation_function": "mean", "name": "GDS281", "version": 1.0, "instances": "10", "variables": 5970, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS281.tab", "compression": "gz" } ], [ [ "GDS2810.tab" ], { "title": "Organized and growth-arrested mammary acini: time course", "description": "Temporal analysis of two nonmalignant mammary epithelial cells (HMEC) grown in a laminin-rich extracellular matrix. Both HMECs transit from a disorganized to an organized state to form polarized acini. Results identify gene signatures with potential value for breast cancer prognosis prediction.", "type": "Expression profiling by array", "pubmed_id": "16849555", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE8096", "order": "none", "update_date": "Jul 12 2007", "subsets": [ { "dataset_id": "GDS2810", "description": "HMT3522 S1 mammary epithelial cells", "sample_id": [ "GSM200612", "GSM200739", "GSM200740", "GSM200741", "GSM200742", "GSM200743" ], "type": "cell line", "id": "GDS2810_1" }, { "dataset_id": "GDS2810", "description": "184 mammary epithelial cells", "sample_id": [ "GSM200748", "GSM200749", "GSM200754", "GSM200755", "GSM200756", "GSM200757" ], "type": "cell line", "id": "GDS2810_2" }, { "dataset_id": "GDS2810", "description": "immortal", "sample_id": [ "GSM200612", "GSM200739", "GSM200740", "GSM200741", "GSM200742", "GSM200743" ], "type": "other", "id": "GDS2810_3" }, { "dataset_id": "GDS2810", "description": "finite life span", "sample_id": [ "GSM200748", "GSM200749", "GSM200754", "GSM200755", "GSM200756", "GSM200757" ], "type": "other", "id": "GDS2810_4" }, { "dataset_id": "GDS2810", "description": "3 d", "sample_id": [ "GSM200612", "GSM200739", "GSM200748", "GSM200749" ], "type": "time", "id": "GDS2810_5" }, { "dataset_id": "GDS2810", "description": "5 d", "sample_id": [ "GSM200740", "GSM200741", "GSM200754", "GSM200755" ], "type": "time", "id": "GDS2810_6" }, { "dataset_id": "GDS2810", "description": "7 d", "sample_id": [ "GSM200742", "GSM200743", "GSM200756", "GSM200757" ], "type": "time", "id": "GDS2810_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2810", "version": 1.0, "instances": "12", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2810.tab", "compression": "gz" } ], [ [ "GDS2811.tab" ], { "title": "Estrogen-related receptor gamma deficiency effect on the fetal heart", "description": "Analysis of hearts from fetuses lacking ERRgamma, a gene expressed at high levels in fetal and postnatal heart. Results provide insight into the role of ERRgamma in the heart\u2019s metabolic switch from a dependence on carbohydrates during fetal life to a dependence on postnatal oxidative metabolism.", "type": "Expression profiling by array", "pubmed_id": "17618853", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8199", "order": "none", "update_date": "Apr 17 2008", "subsets": [ { "dataset_id": "GDS2811", "description": "wild type", "sample_id": [ "GSM202772", "GSM202773", "GSM202774" ], "type": "genotype/variation", "id": "GDS2811_1" }, { "dataset_id": "GDS2811", "description": "heterozygous null", "sample_id": [ "GSM202775", "GSM202776", "GSM202777" ], "type": "genotype/variation", "id": "GDS2811_2" }, { "dataset_id": "GDS2811", "description": "homozygous null", "sample_id": [ "GSM202778", "GSM202779", "GSM202780" ], "type": "genotype/variation", "id": "GDS2811_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2811", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2811.tab", "compression": "gz" } ], [ [ "GDS2813.tab" ], { "title": "Brown and white adipose tissues", "description": "Comparison of brown and white adipose tissues. Brown fat cells are specialized to dissipate energy and can counteract obesity. Results provide insight into the molecular mechanisms controlling brown fat cell determination.", "type": "Expression profiling by array", "pubmed_id": "17618855", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8044", "order": "none", "update_date": "Jul 08 2016", "subsets": [ { "dataset_id": "GDS2813", "description": "brown adipose", "sample_id": [ "GSM198456", "GSM198457", "GSM198458" ], "type": "tissue", "id": "GDS2813_1" }, { "dataset_id": "GDS2813", "description": "white adipose", "sample_id": [ "GSM198496", "GSM198523", "GSM198545" ], "type": "tissue", "id": "GDS2813_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2813", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2813.tab", "compression": "gz" } ], [ [ "GDS2815.tab" ], { "title": "Morphine effect on the striatum", "description": "Analysis of striata from several inbred strains strains, with different opioid-related phenotypes, subjected to single and repeated morphine administrations. Results provide insight into the relationship between gene expression and behavioral response to the drug.", "type": "Expression profiling by array", "pubmed_id": "17598886", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE7762", "order": "none", "update_date": "Apr 21 2008", "subsets": [ { "dataset_id": "GDS2815", "description": "saline", "sample_id": [ "GSM187965", "GSM187966", "GSM187967", "GSM187974", "GSM187975", "GSM187976", "GSM187983", "GSM187984", "GSM187985", "GSM187992", "GSM187993", "GSM187994" ], "type": "agent", "id": "GDS2815_1" }, { "dataset_id": "GDS2815", "description": "morphine", "sample_id": [ "GSM187968", "GSM187969", "GSM187970", "GSM187971", "GSM187972", "GSM187973", "GSM187977", "GSM187978", "GSM187979", "GSM187980", "GSM187981", "GSM187982", "GSM187986", "GSM187987", "GSM187988", "GSM187989", "GSM187990", "GSM187991", "GSM187995", "GSM187996", "GSM187997", "GSM187998", "GSM187999", "GSM188000" ], "type": "agent", "id": "GDS2815_2" }, { "dataset_id": "GDS2815", "description": "control", "sample_id": [ "GSM187965", "GSM187966", "GSM187967", "GSM187974", "GSM187975", "GSM187976", "GSM187983", "GSM187984", "GSM187985", "GSM187992", "GSM187993", "GSM187994" ], "type": "protocol", "id": "GDS2815_3" }, { "dataset_id": "GDS2815", "description": "acute", "sample_id": [ "GSM187968", "GSM187969", "GSM187970", "GSM187977", "GSM187978", "GSM187979", "GSM187986", "GSM187987", "GSM187988", "GSM187995", "GSM187996", "GSM187997" ], "type": "protocol", "id": "GDS2815_4" }, { "dataset_id": "GDS2815", "description": "chronic", "sample_id": [ "GSM187971", "GSM187972", "GSM187973", "GSM187980", "GSM187981", "GSM187982", "GSM187989", "GSM187990", "GSM187991", "GSM187998", "GSM187999", "GSM188000" ], "type": "protocol", "id": "GDS2815_5" }, { "dataset_id": "GDS2815", "description": "129P3/J", "sample_id": [ "GSM187965", "GSM187966", "GSM187967", "GSM187968", "GSM187969", "GSM187970", "GSM187971", "GSM187972", "GSM187973" ], "type": "strain", "id": "GDS2815_6" }, { "dataset_id": "GDS2815", "description": "C57BL/6J", "sample_id": [ "GSM187974", "GSM187975", "GSM187976", "GSM187977", "GSM187978", "GSM187979", "GSM187980", "GSM187981", "GSM187982" ], "type": "strain", "id": "GDS2815_7" }, { "dataset_id": "GDS2815", "description": "DBA/2J", "sample_id": [ "GSM187983", "GSM187984", "GSM187985", "GSM187986", "GSM187987", "GSM187988", "GSM187989", "GSM187990", "GSM187991" ], "type": "strain", "id": "GDS2815_8" }, { "dataset_id": "GDS2815", "description": "SWR/J", "sample_id": [ "GSM187992", "GSM187993", "GSM187994", "GSM187995", "GSM187996", "GSM187997", "GSM187998", "GSM187999", "GSM188000" ], "type": "strain", "id": "GDS2815_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2815", "version": 1.0, "instances": "36", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2815.tab", "compression": "gz" } ], [ [ "GDS2816.tab" ], { "title": "Ras-GRF1 deficiency effect on the hippocampus", "description": "Analysis of laser capture microdissected hippocampi of mutants lacking Ras-GRF1. Ras-GRF-1 is a guanine nucleotide exchange factor predominantly expressed in the central nervous system of mammals. Results provide insight into role of Ras-GRF1 in neural processes.", "type": "Expression profiling by array", "pubmed_id": "17321057", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8425", "order": "none", "update_date": "Apr 21 2008", "subsets": [ { "dataset_id": "GDS2816", "description": "wild type", "sample_id": [ "GSM208599", "GSM208716", "GSM209491" ], "type": "genotype/variation", "id": "GDS2816_1" }, { "dataset_id": "GDS2816", "description": "Ras-GRF1 null", "sample_id": [ "GSM209506", "GSM209507", "GSM209508" ], "type": "genotype/variation", "id": "GDS2816_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2816", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2816.tab", "compression": "gz" } ], [ [ "GDS2817.tab" ], { "title": "Nephronophthisis model", "description": "Analysis of kidneys of animals lacking Glis2. The GLIS2 gene, which encodes a Kruppel-like zinc finger transcription factor, is found in a region of chromosome 16 p linked to nephronophthisis (NPHP). Results provide insight into the role of Glis2 in the pathophysiology of NPHP.", "type": "Expression profiling by array", "pubmed_id": "17618285", "platform": "GPL2897", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "45920", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6113", "order": "none", "update_date": "Apr 25 2008", "subsets": [ { "dataset_id": "GDS2817", "description": "wild type", "sample_id": [ "GSM142097", "GSM142098", "GSM142099" ], "type": "genotype/variation", "id": "GDS2817_1" }, { "dataset_id": "GDS2817", "description": "GLIS2 mutant", "sample_id": [ "GSM142100", "GSM142101", "GSM142102" ], "type": "genotype/variation", "id": "GDS2817_2" } ], "taxid": "10090", "genes": 30397, "aggregation_function": "mean", "name": "GDS2817", "version": 1.0, "instances": "6", "variables": 30399, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2817.tab", "compression": "gz" } ], [ [ "GDS2818.tab" ], { "title": "Adipocytes and preadipocytes from subcutaneous and visceral fat depots", "description": "Analysis of adipocytes and stromovascular fraction containing preadipocytes taken from subcutaneous fat and intraabdominal fat. Individuals with peripheral subcutaneous obesity are at little risk of complications of obesity, while those with visceral obesity are prone to these complications.", "type": "Expression profiling by array", "pubmed_id": "16617105", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE8505", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2818", "description": "subcutaneous adipose", "sample_id": [ "GSM210980", "GSM210981", "GSM210982", "GSM210986", "GSM210987", "GSM210988" ], "type": "tissue", "id": "GDS2818_1" }, { "dataset_id": "GDS2818", "description": "intraabdominal adipose", "sample_id": [ "GSM210983", "GSM210984", "GSM210985", "GSM210989", "GSM210990", "GSM210991" ], "type": "tissue", "id": "GDS2818_2" }, { "dataset_id": "GDS2818", "description": "adipocyte", "sample_id": [ "GSM210980", "GSM210981", "GSM210982", "GSM210983", "GSM210984", "GSM210985" ], "type": "other", "id": "GDS2818_3" }, { "dataset_id": "GDS2818", "description": "stromovascular fraction", "sample_id": [ "GSM210986", "GSM210987", "GSM210988", "GSM210989", "GSM210990", "GSM210991" ], "type": "other", "id": "GDS2818_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2818", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2818.tab", "compression": "gz" } ], [ [ "GDS2819.tab" ], { "title": "Leukemic white blood cells and various RNA preparation protocols", "description": "Analysis of RNA samples prepared from leukemic white blood cells using 3 different protocols. Samples obtained from 27 pediatric patients with various subtypes of acute leukemia. Results provide insight into the impact of RNA preparation methods on the variation in gene expression data.", "type": "Expression profiling by array", "pubmed_id": "17587440", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "99", "value_type": "count", "reference_series": "GSE7757", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS2819", "description": "method A: lysis followed by lysate homogenization", "sample_id": [ "GSM187698", "GSM187701", "GSM187704", "GSM187707", "GSM187710", "GSM187713", "GSM187716", "GSM187719", "GSM187722", "GSM187725", "GSM187728", "GSM187731", "GSM187734", "GSM187737", "GSM187740", "GSM187743", "GSM187746", "GSM187749", "GSM187752", "GSM187755", "GSM187758", "GSM187761", "GSM187764", "GSM187767", "GSM187770", "GSM187771", "GSM187772", "GSM187780", "GSM187781", "GSM187782", "GSM187788", "GSM187789", "GSM187790" ], "type": "protocol", "id": "GDS2819_1" }, { "dataset_id": "GDS2819", "description": "method B: organic solvent", "sample_id": [ "GSM187699", "GSM187702", "GSM187705", "GSM187708", "GSM187711", "GSM187714", "GSM187717", "GSM187720", "GSM187723", "GSM187726", "GSM187729", "GSM187732", "GSM187735", "GSM187738", "GSM187741", "GSM187744", "GSM187747", "GSM187750", "GSM187753", "GSM187756", "GSM187759", "GSM187762", "GSM187765", "GSM187768", "GSM187773", "GSM187774", "GSM187775", "GSM187776", "GSM187783", "GSM187784", "GSM187791", "GSM187792", "GSM187793" ], "type": "protocol", "id": "GDS2819_2" }, { "dataset_id": "GDS2819", "description": "method C: organic solvent followed by purification", "sample_id": [ "GSM187700", "GSM187703", "GSM187706", "GSM187709", "GSM187712", "GSM187715", "GSM187718", "GSM187721", "GSM187724", "GSM187727", "GSM187730", "GSM187733", "GSM187736", "GSM187739", "GSM187742", "GSM187745", "GSM187748", "GSM187751", "GSM187754", "GSM187757", "GSM187760", "GSM187763", "GSM187766", "GSM187769", "GSM187777", "GSM187778", "GSM187779", "GSM187785", "GSM187786", "GSM187787", "GSM187794", "GSM187795", "GSM187796" ], "type": "protocol", "id": "GDS2819_3" }, { "dataset_id": "GDS2819", "description": "patient 1", "sample_id": [ "GSM187698", "GSM187699", "GSM187700" ], "type": "individual", "id": "GDS2819_4" }, { "dataset_id": "GDS2819", "description": "patient 2", "sample_id": [ "GSM187701", "GSM187702", "GSM187703" ], "type": "individual", "id": "GDS2819_5" }, { "dataset_id": "GDS2819", "description": "patient 3", "sample_id": [ "GSM187704", "GSM187705", "GSM187706" ], "type": "individual", "id": "GDS2819_6" }, { "dataset_id": "GDS2819", "description": "patient 4", "sample_id": [ "GSM187707", "GSM187708", "GSM187709" ], "type": "individual", "id": "GDS2819_7" }, { "dataset_id": "GDS2819", "description": "patient 5", "sample_id": [ "GSM187710", "GSM187711", "GSM187712" ], "type": "individual", "id": "GDS2819_8" }, { "dataset_id": "GDS2819", "description": "patient 6", "sample_id": [ "GSM187713", "GSM187714", "GSM187715" ], "type": "individual", "id": "GDS2819_9" }, { "dataset_id": "GDS2819", "description": "patient 7", "sample_id": [ "GSM187716", "GSM187717", "GSM187718" ], "type": "individual", "id": "GDS2819_10" }, { "dataset_id": "GDS2819", "description": "patient 8", "sample_id": [ "GSM187719", "GSM187720", "GSM187721" ], "type": "individual", "id": "GDS2819_11" }, { "dataset_id": "GDS2819", "description": "patient 9", "sample_id": [ "GSM187722", "GSM187723", "GSM187724" ], "type": "individual", "id": "GDS2819_12" }, { "dataset_id": "GDS2819", "description": "patient 10", "sample_id": [ "GSM187725", "GSM187726", "GSM187727" ], "type": "individual", "id": "GDS2819_13" }, { "dataset_id": "GDS2819", "description": "patient 11", "sample_id": [ "GSM187728", "GSM187729", "GSM187730" ], "type": "individual", "id": "GDS2819_14" }, { "dataset_id": "GDS2819", "description": "patient 12", "sample_id": [ "GSM187731", "GSM187732", "GSM187733" ], "type": "individual", "id": "GDS2819_15" }, { "dataset_id": "GDS2819", "description": "patient 13", "sample_id": [ "GSM187734", "GSM187735", "GSM187736" ], "type": "individual", "id": "GDS2819_16" }, { "dataset_id": "GDS2819", "description": "patient 14", "sample_id": [ "GSM187737", "GSM187738", "GSM187739" ], "type": "individual", "id": "GDS2819_17" }, { "dataset_id": "GDS2819", "description": "patient 15", "sample_id": [ "GSM187740", "GSM187741", "GSM187742" ], "type": "individual", "id": "GDS2819_18" }, { "dataset_id": "GDS2819", "description": "patient 16", "sample_id": [ "GSM187743", "GSM187744", "GSM187745" ], "type": "individual", "id": "GDS2819_19" }, { "dataset_id": "GDS2819", "description": "patient 17", "sample_id": [ "GSM187746", "GSM187747", "GSM187748" ], "type": "individual", "id": "GDS2819_20" }, { "dataset_id": "GDS2819", "description": "patient 18", "sample_id": [ "GSM187749", "GSM187750", "GSM187751" ], "type": "individual", "id": "GDS2819_21" }, { "dataset_id": "GDS2819", "description": "patient 19", "sample_id": [ "GSM187752", "GSM187753", "GSM187754" ], "type": "individual", "id": "GDS2819_22" }, { "dataset_id": "GDS2819", "description": "patient 20", "sample_id": [ "GSM187755", "GSM187756", "GSM187757" ], "type": "individual", "id": "GDS2819_23" }, { "dataset_id": "GDS2819", "description": "patient 21", "sample_id": [ "GSM187758", "GSM187759", "GSM187760" ], "type": "individual", "id": "GDS2819_24" }, { "dataset_id": "GDS2819", "description": "patient 22", "sample_id": [ "GSM187761", "GSM187762", "GSM187763" ], "type": "individual", "id": "GDS2819_25" }, { "dataset_id": "GDS2819", "description": "patient 23", "sample_id": [ "GSM187764", "GSM187765", "GSM187766" ], "type": "individual", "id": "GDS2819_26" }, { "dataset_id": "GDS2819", "description": "patient 24", "sample_id": [ "GSM187767", "GSM187768", "GSM187769" ], "type": "individual", "id": "GDS2819_27" }, { "dataset_id": "GDS2819", "description": "patient 25", "sample_id": [ "GSM187770", "GSM187771", "GSM187772", "GSM187773", "GSM187774", "GSM187775", "GSM187777", "GSM187778", "GSM187779" ], "type": "individual", "id": "GDS2819_28" }, { "dataset_id": "GDS2819", "description": "patient 26", "sample_id": [ "GSM187776", "GSM187780", "GSM187781", "GSM187782", "GSM187783", "GSM187784", "GSM187785", "GSM187786", "GSM187787" ], "type": "individual", "id": "GDS2819_29" }, { "dataset_id": "GDS2819", "description": "patient 27", "sample_id": [ "GSM187788", "GSM187789", "GSM187790", "GSM187791", "GSM187792", "GSM187793", "GSM187794", "GSM187795", "GSM187796" ], "type": "individual", "id": "GDS2819_30" }, { "dataset_id": "GDS2819", "description": "ALL with hyperdiploid karyotype", "sample_id": [ "GSM187713", "GSM187714", "GSM187715", "GSM187731", "GSM187732", "GSM187733", "GSM187752", "GSM187753", "GSM187754" ], "type": "disease state", "id": "GDS2819_31" }, { "dataset_id": "GDS2819", "description": "ALL with t 1, 19", "sample_id": [ "GSM187710", "GSM187711", "GSM187712" ], "type": "disease state", "id": "GDS2819_32" }, { "dataset_id": "GDS2819", "description": "ALL with t 12, 21", "sample_id": [ "GSM187707", "GSM187708", "GSM187709", "GSM187728", "GSM187729", "GSM187730", "GSM187740", "GSM187741", "GSM187742" ], "type": "disease state", "id": "GDS2819_33" }, { "dataset_id": "GDS2819", "description": "AML with normal karyotype and other abnormalities", "sample_id": [ "GSM187719", "GSM187720", "GSM187721", "GSM187770", "GSM187771", "GSM187772", "GSM187773", "GSM187774", "GSM187775", "GSM187777", "GSM187778", "GSM187779" ], "type": "disease state", "id": "GDS2819_34" }, { "dataset_id": "GDS2819", "description": "AML with t 11q23, MLL", "sample_id": [ "GSM187743", "GSM187744", "GSM187745", "GSM187776", "GSM187780", "GSM187781", "GSM187782", "GSM187783", "GSM187784", "GSM187785", "GSM187786", "GSM187787" ], "type": "disease state", "id": "GDS2819_35" }, { "dataset_id": "GDS2819", "description": "c-ALL, Pre-B-ALL without t 9,22", "sample_id": [ "GSM187734", "GSM187735", "GSM187736", "GSM187737", "GSM187738", "GSM187739", "GSM187755", "GSM187756", "GSM187757", "GSM187761", "GSM187762", "GSM187763", "GSM187764", "GSM187765", "GSM187766", "GSM187767", "GSM187768", "GSM187769", "GSM187788", "GSM187789", "GSM187790", "GSM187791", "GSM187792", "GSM187793", "GSM187794", "GSM187795", "GSM187796" ], "type": "disease state", "id": "GDS2819_36" }, { "dataset_id": "GDS2819", "description": "c-ALL, Pre-B-ALL with t 9,22", "sample_id": [ "GSM187701", "GSM187702", "GSM187703", "GSM187716", "GSM187717", "GSM187718", "GSM187722", "GSM187723", "GSM187724" ], "type": "disease state", "id": "GDS2819_37" }, { "dataset_id": "GDS2819", "description": "Pro-B-ALL with t 11q23, MLL", "sample_id": [ "GSM187698", "GSM187699", "GSM187700" ], "type": "disease state", "id": "GDS2819_38" }, { "dataset_id": "GDS2819", "description": "T-ALL", "sample_id": [ "GSM187704", "GSM187705", "GSM187706", "GSM187725", "GSM187726", "GSM187727", "GSM187746", "GSM187747", "GSM187748", "GSM187749", "GSM187750", "GSM187751", "GSM187758", "GSM187759", "GSM187760" ], "type": "disease state", "id": "GDS2819_39" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2819", "version": 1.0, "instances": "99", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2819.tab", "compression": "gz" } ], [ [ "GDS282.tab" ], { "title": "Hypo-osmotic shock, ppt1 mutant", "description": "Temporal analysis of wild type and ppt1 mutant strains after hypo-osmotic shock. Cultures grown with 1M sorbitol for ~20 hours, then cells resuspended in YPD after which samples collected at several time points up to 1 hour.", "type": "Expression profiling by array", "pubmed_id": "12740579", "platform": "GPL288", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE407", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS282", "description": "wild type", "sample_id": [ "GSM6014", "GSM6016", "GSM6017", "GSM6018", "GSM6019" ], "type": "strain", "id": "GDS282_1" }, { "dataset_id": "GDS282", "description": "ppt1 mutant", "sample_id": [ "GSM6015", "GSM6020", "GSM6021", "GSM6022", "GSM6023" ], "type": "strain", "id": "GDS282_2" }, { "dataset_id": "GDS282", "description": "0 minute", "sample_id": [ "GSM6014", "GSM6020" ], "type": "time", "id": "GDS282_3" }, { "dataset_id": "GDS282", "description": "7 minute", "sample_id": [ "GSM6016", "GSM6021" ], "type": "time", "id": "GDS282_4" }, { "dataset_id": "GDS282", "description": "15 minute", "sample_id": [ "GSM6017", "GSM6022" ], "type": "time", "id": "GDS282_5" }, { "dataset_id": "GDS282", "description": "30 minute", "sample_id": [ "GSM6018", "GSM6023" ], "type": "time", "id": "GDS282_6" }, { "dataset_id": "GDS282", "description": "60 minute", "sample_id": [ "GSM6015", "GSM6019" ], "type": "time", "id": "GDS282_7" } ], "taxid": "4932", "genes": 5807, "aggregation_function": "mean", "name": "GDS282", "version": 1.0, "instances": "10", "variables": 5810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS282.tab", "compression": "gz" } ], [ [ "GDS2820.tab" ], { "title": "Cannabinoid receptor double knockout mutant response to contact allergen", "description": "Analysis of skins of mutants lacking 2 cannabinoid receptors after treatment with the contact allergen 2,4-dinitrofluorobenzene (DNFB). DNFB elicits a cutaneous T-cell mediated allergic response. Results provide insight into the role of the endocannabinoid system in allergic contact dermatitis.", "type": "Expression profiling by array", "pubmed_id": "17556587", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7694", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS2820", "description": "wild type", "sample_id": [ "GSM186666", "GSM186667", "GSM186668", "GSM186709", "GSM186710", "GSM186711" ], "type": "genotype/variation", "id": "GDS2820_1" }, { "dataset_id": "GDS2820", "description": "double null mutant", "sample_id": [ "GSM186743", "GSM187134", "GSM187135", "GSM187136", "GSM187137", "GSM187138" ], "type": "genotype/variation", "id": "GDS2820_2" }, { "dataset_id": "GDS2820", "description": "control", "sample_id": [ "GSM186666", "GSM186667", "GSM186668", "GSM186743", "GSM187134", "GSM187135" ], "type": "agent", "id": "GDS2820_3" }, { "dataset_id": "GDS2820", "description": "DNFB", "sample_id": [ "GSM186709", "GSM186710", "GSM186711", "GSM187136", "GSM187137", "GSM187138" ], "type": "agent", "id": "GDS2820_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2820", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2820.tab", "compression": "gz" } ], [ [ "GDS2821.tab" ], { "title": "Parkinson's disease: substantia nigra", "description": "Analysis of substantia nigrae from postmortem brains of patients with Parkinson\u2019s disease (PD). Neurons in the substantia nigra, which produces dopamine, degenerate in PD. Results provide insight into the molecular pathogenesis of PD.", "type": "Expression profiling by array", "pubmed_id": "17571925", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE7621", "order": "none", "update_date": "Apr 25 2008", "subsets": [ { "dataset_id": "GDS2821", "description": "control", "sample_id": [ "GSM184354", "GSM184355", "GSM184356", "GSM184357", "GSM184358", "GSM184359", "GSM184360", "GSM184361", "GSM184362" ], "type": "disease state", "id": "GDS2821_1" }, { "dataset_id": "GDS2821", "description": "Parkinson's disease", "sample_id": [ "GSM184363", "GSM184364", "GSM184365", "GSM184366", "GSM184367", "GSM184368", "GSM184369", "GSM184370", "GSM184371", "GSM184372", "GSM184373", "GSM184374", "GSM184375", "GSM184376", "GSM184377", "GSM184378" ], "type": "disease state", "id": "GDS2821_2" }, { "dataset_id": "GDS2821", "description": "male", "sample_id": [ "GSM184355", "GSM184360", "GSM184361", "GSM184362", "GSM184363", "GSM184364", "GSM184365", "GSM184366", "GSM184367", "GSM184369", "GSM184370", "GSM184372", "GSM184373", "GSM184375", "GSM184376", "GSM184377", "GSM184378" ], "type": "gender", "id": "GDS2821_3" }, { "dataset_id": "GDS2821", "description": "female", "sample_id": [ "GSM184354", "GSM184356", "GSM184357", "GSM184358", "GSM184359", "GSM184368", "GSM184371", "GSM184374" ], "type": "gender", "id": "GDS2821_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2821", "version": 1.0, "instances": "25", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2821.tab", "compression": "gz" } ], [ [ "GDS2822.tab" ], { "title": "Placental malaria", "description": "Analysis of inflamed placentas from patients with chronic placental malaria (PM). Chronic inflammation during PM is frequent in first time mothers and is associated with poor maternal and fetal outcomes. Results provide insight into the pathogenesis of chronic PM.", "type": "Expression profiling by array", "pubmed_id": "17579077", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE7586", "order": "none", "update_date": "Apr 29 2008", "subsets": [ { "dataset_id": "GDS2822", "description": "control", "sample_id": [ "GSM183605", "GSM183606", "GSM183607", "GSM183608", "GSM183609", "GSM183620", "GSM183621", "GSM183622", "GSM183623", "GSM183624" ], "type": "disease state", "id": "GDS2822_1" }, { "dataset_id": "GDS2822", "description": "acute malaria", "sample_id": [ "GSM183611", "GSM183613", "GSM183618" ], "type": "disease state", "id": "GDS2822_2" }, { "dataset_id": "GDS2822", "description": "chronic malaria", "sample_id": [ "GSM183610", "GSM183612", "GSM183614", "GSM183615", "GSM183616", "GSM183617", "GSM183619" ], "type": "disease state", "id": "GDS2822_3" }, { "dataset_id": "GDS2822", "description": "uninflamed", "sample_id": [ "GSM183605", "GSM183606", "GSM183607", "GSM183608", "GSM183609", "GSM183611", "GSM183613", "GSM183618", "GSM183620", "GSM183621", "GSM183622", "GSM183624" ], "type": "other", "id": "GDS2822_4" }, { "dataset_id": "GDS2822", "description": "inflamed", "sample_id": [ "GSM183610", "GSM183612", "GSM183614", "GSM183615", "GSM183616", "GSM183617", "GSM183619", "GSM183623" ], "type": "other", "id": "GDS2822_5" }, { "dataset_id": "GDS2822", "description": "no infection", "sample_id": [ "GSM183605", "GSM183606", "GSM183607", "GSM183608", "GSM183609" ], "type": "infection", "id": "GDS2822_6" }, { "dataset_id": "GDS2822", "description": "past infection", "sample_id": [ "GSM183620", "GSM183621", "GSM183622", "GSM183623", "GSM183624" ], "type": "infection", "id": "GDS2822_7" }, { "dataset_id": "GDS2822", "description": "infection", "sample_id": [ "GSM183610", "GSM183611", "GSM183612", "GSM183613", "GSM183614", "GSM183615", "GSM183616", "GSM183617", "GSM183618", "GSM183619" ], "type": "infection", "id": "GDS2822_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2822", "version": 1.0, "instances": "20", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2822.tab", "compression": "gz" } ], [ [ "GDS2823.tab" ], { "title": "SOD1-G93A mutant model of amyotrophic lateral sclerosis: embryonic motor neurons", "description": "Analysis of spinal cord motor neurons from embryonic day 14 transgenics expressing the human superoxide dismutase 1 (SOD1) G93A mutant protein. The SOD1-G93A transgenic is a model for amyotrophic lateral sclerosis (ALS). Results provide insight into the pathogenesis of ALS.", "type": "Expression profiling by array", "pubmed_id": "17463094", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE7493", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2823", "description": "transgenic mutant", "sample_id": [ "GSM181537", "GSM181538", "GSM181539", "GSM181540" ], "type": "genotype/variation", "id": "GDS2823_1" }, { "dataset_id": "GDS2823", "description": "wild type", "sample_id": [ "GSM181541", "GSM181542", "GSM181543", "GSM181544", "GSM181545" ], "type": "genotype/variation", "id": "GDS2823_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2823", "version": 1.0, "instances": "9", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2823.tab", "compression": "gz" } ], [ [ "GDS2824.tab" ], { "title": "Autism, fragile X syndrome, and 15q11-q13 duplication: lymphoblastoid cells", "description": "Analysis of lymphoblastoid cells from males with autism due to a fragile X mutation or a 15q11-q13 duplication. Results provide insight into the pathogenesis of autism spectrum disorders.", "type": "Expression profiling by array", "pubmed_id": "17519220", "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "30", "value_type": "log ratio", "reference_series": "GSE7329", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2824", "description": "autism", "sample_id": [ "GSM176505", "GSM176506", "GSM176507", "GSM176508", "GSM176509", "GSM176510", "GSM176535", "GSM176570", "GSM176575", "GSM176579", "GSM176583", "GSM176586", "GSM176589", "GSM176592", "GSM176594" ], "type": "disease state", "id": "GDS2824_1" }, { "dataset_id": "GDS2824", "description": "normal", "sample_id": [ "GSM176601", "GSM176602", "GSM176604", "GSM176605", "GSM176607", "GSM176608", "GSM176609", "GSM176610", "GSM176612", "GSM176613", "GSM176614", "GSM176615", "GSM176617", "GSM176618", "GSM176619" ], "type": "disease state", "id": "GDS2824_2" }, { "dataset_id": "GDS2824", "description": "15q11-q13 duplication", "sample_id": [ "GSM176505", "GSM176506", "GSM176507", "GSM176508", "GSM176509", "GSM176510", "GSM176535" ], "type": "genotype/variation", "id": "GDS2824_3" }, { "dataset_id": "GDS2824", "description": "fragile X mutation", "sample_id": [ "GSM176570", "GSM176575", "GSM176579", "GSM176583", "GSM176586", "GSM176589", "GSM176592", "GSM176594" ], "type": "genotype/variation", "id": "GDS2824_4" }, { "dataset_id": "GDS2824", "description": "control", "sample_id": [ "GSM176601", "GSM176602", "GSM176604", "GSM176605", "GSM176607", "GSM176608", "GSM176609", "GSM176610", "GSM176612", "GSM176613", "GSM176614", "GSM176615", "GSM176617", "GSM176618", "GSM176619" ], "type": "genotype/variation", "id": "GDS2824_5" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS2824", "version": 1.0, "instances": "30", "variables": 30020, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2824.tab", "compression": "gz" } ], [ [ "GDS2825.tab" ], { "title": "Benzalkonium chloride adapted E. coli K12", "description": "Analysis of E. coli K12 strains adapted to grow in benzalkonium chloride (BC). BC is a commonly used disinfectant and preservative. Results provide insight into the molecular basis of this resistance.", "type": "Expression profiling by array", "pubmed_id": "17379704", "platform": "GPL189", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4314", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE6712", "order": "none", "update_date": "Apr 29 2008", "subsets": [ { "dataset_id": "GDS2825", "description": "control", "sample_id": [ "GSM153894", "GSM154801", "GSM154802", "GSM154803", "GSM154804" ], "type": "strain", "id": "GDS2825_1" }, { "dataset_id": "GDS2825", "description": "adapted strain 1", "sample_id": [ "GSM154805", "GSM154808", "GSM154814", "GSM154819", "GSM154823" ], "type": "strain", "id": "GDS2825_2" }, { "dataset_id": "GDS2825", "description": "adapted strain 2", "sample_id": [ "GSM154806", "GSM154809", "GSM154812", "GSM154816", "GSM154820", "GSM154824" ], "type": "strain", "id": "GDS2825_3" }, { "dataset_id": "GDS2825", "description": "adapted strain 3", "sample_id": [ "GSM154807", "GSM154810", "GSM154813", "GSM154818", "GSM154821", "GSM154825" ], "type": "strain", "id": "GDS2825_4" }, { "dataset_id": "GDS2825", "description": "untreated", "sample_id": [ "GSM153894", "GSM154801", "GSM154802", "GSM154803", "GSM154804", "GSM154805", "GSM154806", "GSM154807", "GSM154808", "GSM154809", "GSM154810", "GSM154812", "GSM154813" ], "type": "growth protocol", "id": "GDS2825_5" }, { "dataset_id": "GDS2825", "description": "benzalkonium chloride", "sample_id": [ "GSM154814", "GSM154816", "GSM154818", "GSM154819", "GSM154820", "GSM154821", "GSM154823", "GSM154824", "GSM154825" ], "type": "growth protocol", "id": "GDS2825_6" } ], "taxid": "562", "genes": 4271, "aggregation_function": "mean", "name": "GDS2825", "version": 1.0, "instances": "22", "variables": 4274, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2825.tab", "compression": "gz" } ], [ [ "GDS2826.tab" ], { "title": "Sickle cell anemia model: brain response to naloxone", "description": "Analysis of brains of NY1DD transgenic animals treated with naloxone. The NY1DD strain is a model for sickle cell anemia. Naloxone is an opioid antagonist that possesses potent analgesic activity in NY1DD animals. Results provide insight into the mechanism of action of naloxone in this model.", "type": "Expression profiling by array", "pubmed_id": "17389363", "platform": "GPL4464", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "11532", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE6578", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2826", "description": "wild type", "sample_id": [ "GSM149076", "GSM149078", "GSM149084" ], "type": "strain", "id": "GDS2826_1" }, { "dataset_id": "GDS2826", "description": "NY1DD", "sample_id": [ "GSM141569", "GSM142384", "GSM142385" ], "type": "strain", "id": "GDS2826_2" } ], "taxid": "10090", "genes": 9443, "aggregation_function": "mean", "name": "GDS2826", "version": 1.0, "instances": "6", "variables": 9445, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2826.tab", "compression": "gz" } ], [ [ "GDS2827.tab" ], { "title": "ERalpha-negative ERbeta-positive breast carcinoma response to tamoxifen", "description": "Analysis of estrogen receptor (ER) alpha negative ERbeta-positive breast cancer tumors from patients treated with tamoxifen for 2 years. Unlike ERalpha-negative ERbeta-negative breast cancers, ERalpha-negative ERbeta-positive cancers respond favorably to tamoxifen treatment.", "type": "Expression profiling by array", "pubmed_id": "17404078", "platform": "GPL3883", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "27648", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "88", "value_type": "log2 ratio", "reference_series": "GSE6577", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2827", "description": "ERalpha negative, ERbeta negative", "sample_id": [ "GSM152032", "GSM152033", "GSM152063", "GSM152074", "GSM152080", "GSM152081", "GSM152083", "GSM152091", "GSM152108", "GSM152114" ], "type": "specimen", "id": "GDS2827_1" }, { "dataset_id": "GDS2827", "description": "ERalpha negative, ERbeta positive", "sample_id": [ "GSM152035", "GSM152039", "GSM152041", "GSM152044", "GSM152045", "GSM152051", "GSM152054", "GSM152057", "GSM152058", "GSM152067", "GSM152068", "GSM152075", "GSM152076", "GSM152079", "GSM152084", "GSM152089", "GSM152095", "GSM152096", "GSM152097", "GSM152099", "GSM152106", "GSM152107", "GSM152109", "GSM152111", "GSM152112", "GSM152113", "GSM152115" ], "type": "specimen", "id": "GDS2827_2" }, { "dataset_id": "GDS2827", "description": "ERalpha negative, ERbeta strong positve", "sample_id": [ "GSM152030", "GSM152038", "GSM152042", "GSM152062", "GSM152077", "GSM152088", "GSM152100", "GSM152102", "GSM152104" ], "type": "specimen", "id": "GDS2827_3" }, { "dataset_id": "GDS2827", "description": "ERalpha positive, ERbeta negative", "sample_id": [ "GSM152028", "GSM152029", "GSM152049", "GSM152053", "GSM152059", "GSM152085", "GSM152101", "GSM152105" ], "type": "specimen", "id": "GDS2827_4" }, { "dataset_id": "GDS2827", "description": "ERalpha positive, ERbeta positive", "sample_id": [ "GSM152034", "GSM152036", "GSM152040", "GSM152043", "GSM152046", "GSM152047", "GSM152048", "GSM152050", "GSM152052", "GSM152056", "GSM152060", "GSM152065", "GSM152066", "GSM152069", "GSM152070", "GSM152071", "GSM152072", "GSM152073", "GSM152078", "GSM152082", "GSM152086", "GSM152090", "GSM152092", "GSM152093", "GSM152094", "GSM152098", "GSM152110" ], "type": "specimen", "id": "GDS2827_5" }, { "dataset_id": "GDS2827", "description": "ERalpha positive, ERbeta strong positive", "sample_id": [ "GSM152031", "GSM152037", "GSM152055", "GSM152061", "GSM152064", "GSM152087", "GSM152103" ], "type": "specimen", "id": "GDS2827_6" } ], "taxid": "9606", "genes": 17580, "aggregation_function": "mean", "name": "GDS2827", "version": 1.0, "instances": "88", "variables": 17582, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2827.tab", "compression": "gz" } ], [ [ "GDS283.tab" ], { "title": "Stationary phase, ypl230w mutant", "description": "Temporal analysis of wild type and ypl230w mutant strains in stationary phase. Cultures were grown to OD600 of 0.27 (ypl230w) and 0.4 (wild-type), then samples collected at various time points up to 24 hours.", "type": "Expression profiling by array", "pubmed_id": "12740579", "platform": "GPL289", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6111", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE408", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS283", "description": "wild type", "sample_id": [ "GSM6024", "GSM6028", "GSM6029", "GSM6030", "GSM6031", "GSM6032" ], "type": "strain", "id": "GDS283_1" }, { "dataset_id": "GDS283", "description": "ypl230w mutant", "sample_id": [ "GSM6025", "GSM6026", "GSM6027", "GSM6033", "GSM6034", "GSM6035" ], "type": "strain", "id": "GDS283_2" }, { "dataset_id": "GDS283", "description": "0 hour", "sample_id": [ "GSM6024", "GSM6033" ], "type": "time", "id": "GDS283_3" }, { "dataset_id": "GDS283", "description": "2 hour", "sample_id": [ "GSM6034" ], "type": "time", "id": "GDS283_4" }, { "dataset_id": "GDS283", "description": "3 hour", "sample_id": [ "GSM6028" ], "type": "time", "id": "GDS283_5" }, { "dataset_id": "GDS283", "description": "5 hour", "sample_id": [ "GSM6029", "GSM6035" ], "type": "time", "id": "GDS283_6" }, { "dataset_id": "GDS283", "description": "7 hour", "sample_id": [ "GSM6025", "GSM6030" ], "type": "time", "id": "GDS283_7" }, { "dataset_id": "GDS283", "description": "9 hour", "sample_id": [ "GSM6026", "GSM6031" ], "type": "time", "id": "GDS283_8" }, { "dataset_id": "GDS283", "description": "24 hour", "sample_id": [ "GSM6027", "GSM6032" ], "type": "time", "id": "GDS283_9" } ], "taxid": "4932", "genes": 6085, "aggregation_function": "mean", "name": "GDS283", "version": 1.0, "instances": "12", "variables": 6088, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS283.tab", "compression": "gz" } ], [ [ "GDS2830.tab" ], { "title": "Strains resistant to environmental stresses", "description": "Analysis of several lines each selected for resistance to a different environmental stress factor. Results provide insight into the molecular and genetic mechanisms that promote adaptation to environmental stresses.", "type": "Expression profiling by array", "pubmed_id": "17584255", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE6558", "order": "none", "update_date": "Apr 29 2008", "subsets": [ { "dataset_id": "GDS2830", "description": "control", "sample_id": [ "GSM151707", "GSM151708", "GSM151709" ], "type": "strain", "id": "GDS2830_1" }, { "dataset_id": "GDS2830", "description": "heat", "sample_id": [ "GSM151710", "GSM151711", "GSM151712" ], "type": "strain", "id": "GDS2830_2" }, { "dataset_id": "GDS2830", "description": "constant 30 degrees", "sample_id": [ "GSM151713", "GSM151714", "GSM151715" ], "type": "strain", "id": "GDS2830_3" }, { "dataset_id": "GDS2830", "description": "cold", "sample_id": [ "GSM151716", "GSM151717", "GSM151718" ], "type": "strain", "id": "GDS2830_4" }, { "dataset_id": "GDS2830", "description": "longevity", "sample_id": [ "GSM151719", "GSM151720", "GSM151721" ], "type": "strain", "id": "GDS2830_5" }, { "dataset_id": "GDS2830", "description": "heat knock down", "sample_id": [ "GSM151722", "GSM151723", "GSM151724" ], "type": "strain", "id": "GDS2830_6" }, { "dataset_id": "GDS2830", "description": "starvation", "sample_id": [ "GSM151725", "GSM151726", "GSM151727" ], "type": "strain", "id": "GDS2830_7" }, { "dataset_id": "GDS2830", "description": "desiccation", "sample_id": [ "GSM151728", "GSM151729", "GSM151730" ], "type": "strain", "id": "GDS2830_8" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS2830", "version": 1.0, "instances": "24", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2830.tab", "compression": "gz" } ], [ [ "GDS2831.tab" ], { "title": "Primary graft dysfunction after lung transplantation", "description": "Analysis of donor lung biopsies from recipients that developed primary graft dysfunction after lung transplantation. Results provide insight into the pathogenesis of primary lung graft dysfunction.", "type": "Expression profiling by array", "pubmed_id": "17845573", "platform": "GPL5356", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "17635", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE8021", "order": "none", "update_date": "Apr 30 2008", "subsets": [ { "dataset_id": "GDS2831", "description": "control", "sample_id": [ "GSM198618", "GSM198622", "GSM198623", "GSM198626", "GSM198627", "GSM198628", "GSM198629", "GSM198630", "GSM198631", "GSM198632", "GSM198633", "GSM198634", "GSM198635", "GSM198636", "GSM198639", "GSM198641", "GSM198642", "GSM198643", "GSM198644", "GSM198645", "GSM198649", "GSM198651", "GSM198653", "GSM198654", "GSM198655", "GSM198656", "GSM198657", "GSM198658", "GSM198659", "GSM198660", "GSM198662", "GSM198663", "GSM198664", "GSM198665" ], "type": "disease state", "id": "GDS2831_1" }, { "dataset_id": "GDS2831", "description": "primary graft dysfunction", "sample_id": [ "GSM198616", "GSM198617", "GSM198619", "GSM198620", "GSM198621", "GSM198624", "GSM198625", "GSM198637", "GSM198638", "GSM198640", "GSM198646", "GSM198647", "GSM198648", "GSM198650", "GSM198652", "GSM198661" ], "type": "disease state", "id": "GDS2831_2" } ], "taxid": "9606", "genes": 13734, "aggregation_function": "mean", "name": "GDS2831", "version": 1.0, "instances": "50", "variables": 13736, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2831.tab", "compression": "gz" } ], [ [ "GDS2832.tab" ], { "title": "Sphingosine-1-phosphate effect on embryonic stem cells", "description": "Analysis of embryonic stem cells (ESCs) after treatment with sphingosine-1-phosphate (S1P) which plays a role in regulation of fate in many cell types. ESCs grown on mouse embryo fibroblast feeder cells and under feeder-free conditions. Results provide insight into the role of S1P in ESC renewal.", "type": "Expression profiling by array", "pubmed_id": "18393631", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7896", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2832", "description": "standard condition", "sample_id": [ "GSM194307", "GSM194308", "GSM194309", "GSM194310", "GSM194311", "GSM194312" ], "type": "growth protocol", "id": "GDS2832_1" }, { "dataset_id": "GDS2832", "description": "feeder-free Matrigel", "sample_id": [ "GSM194313", "GSM194314" ], "type": "growth protocol", "id": "GDS2832_2" }, { "dataset_id": "GDS2832", "description": "control", "sample_id": [ "GSM194307", "GSM194308", "GSM194309", "GSM194313", "GSM194314" ], "type": "agent", "id": "GDS2832_3" }, { "dataset_id": "GDS2832", "description": "sphingosine-1-phosphate", "sample_id": [ "GSM194310", "GSM194311", "GSM194312" ], "type": "agent", "id": "GDS2832_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2832", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2832.tab", "compression": "gz" } ], [ [ "GDS2833.tab" ], { "title": "Polyomavirus JCV resistant glial cell line (HG-U133A)", "description": "Analysis of SVGR2 glial cells resistant to the human polyomavirus JCV, the causative agent of progressive multifocal leukoencephalopathy. SVGR2 cells are derived from susceptible glial cells (SVG-A). Results provide insight into the molecular mechanisms underlying susceptibility to JCV infection.", "type": "Expression profiling by array", "pubmed_id": "17555786", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7819", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS2833", "description": "non-resistant SVG-A", "sample_id": [ "GSM189708", "GSM189709", "GSM189710" ], "type": "cell type", "id": "GDS2833_1" }, { "dataset_id": "GDS2833", "description": "resistant SVGR2", "sample_id": [ "GSM189711", "GSM189712", "GSM189713" ], "type": "cell type", "id": "GDS2833_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2833", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2833.tab", "compression": "gz" } ], [ [ "GDS2834.tab" ], { "title": "Polyomavirus JCV resistant glial cell line (HG-U133B)", "description": "Analysis of SVGR2 glial cells resistant to the human polyomavirus JCV, the causative agent of progressive multifocal leukoencephalopathy. SVGR2 cells are derived from susceptible glial cells (SVG-A). Results provide insight into the molecular mechanisms underlying susceptibility to JCV infection.", "type": "Expression profiling by array", "pubmed_id": "17555786", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7819", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS2834", "description": "non-resistant SVG-A", "sample_id": [ "GSM189714", "GSM189715", "GSM189716" ], "type": "cell type", "id": "GDS2834_1" }, { "dataset_id": "GDS2834", "description": "resistant SVGR2", "sample_id": [ "GSM189717", "GSM189718", "GSM189719" ], "type": "cell type", "id": "GDS2834_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2834", "version": 1.0, "instances": "6", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2834.tab", "compression": "gz" } ], [ [ "GDS2835.tab" ], { "title": "Ovarian endometriosis", "description": "Comparison of endometriosis lesions to normal endometrial tissues obtained from the same patient at the same time. Results provide insight into the pathogenesis of endometriosis.", "type": "Expression profiling by array", "pubmed_id": "17640886", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE7305", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS2835", "description": "normal", "sample_id": [ "GSM175776", "GSM175777", "GSM175778", "GSM175779", "GSM175780", "GSM175781", "GSM175782", "GSM175783", "GSM175784", "GSM175785" ], "type": "disease state", "id": "GDS2835_1" }, { "dataset_id": "GDS2835", "description": "ovarian endometriosis", "sample_id": [ "GSM175766", "GSM175767", "GSM175768", "GSM175769", "GSM175770", "GSM175771", "GSM175772", "GSM175773", "GSM175774", "GSM175775" ], "type": "disease state", "id": "GDS2835_2" }, { "dataset_id": "GDS2835", "description": "01-M", "sample_id": [ "GSM175766", "GSM175776" ], "type": "individual", "id": "GDS2835_3" }, { "dataset_id": "GDS2835", "description": "02-M", "sample_id": [ "GSM175767", "GSM175777" ], "type": "individual", "id": "GDS2835_4" }, { "dataset_id": "GDS2835", "description": "04-M", "sample_id": [ "GSM175768", "GSM175778" ], "type": "individual", "id": "GDS2835_5" }, { "dataset_id": "GDS2835", "description": "05-M", "sample_id": [ "GSM175769", "GSM175779" ], "type": "individual", "id": "GDS2835_6" }, { "dataset_id": "GDS2835", "description": "06-M", "sample_id": [ "GSM175770", "GSM175780" ], "type": "individual", "id": "GDS2835_7" }, { "dataset_id": "GDS2835", "description": "02-G", "sample_id": [ "GSM175771", "GSM175781" ], "type": "individual", "id": "GDS2835_8" }, { "dataset_id": "GDS2835", "description": "03-G", "sample_id": [ "GSM175772", "GSM175782" ], "type": "individual", "id": "GDS2835_9" }, { "dataset_id": "GDS2835", "description": "05-G", "sample_id": [ "GSM175773", "GSM175783" ], "type": "individual", "id": "GDS2835_10" }, { "dataset_id": "GDS2835", "description": "06-G", "sample_id": [ "GSM175774", "GSM175784" ], "type": "individual", "id": "GDS2835_11" }, { "dataset_id": "GDS2835", "description": "08-G", "sample_id": [ "GSM175775", "GSM175785" ], "type": "individual", "id": "GDS2835_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2835", "version": 1.0, "instances": "20", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2835.tab", "compression": "gz" } ], [ [ "GDS2838.tab" ], { "title": "Abdominal aortic aneurysm", "description": "Analysis of aneurysmal abdominal aortas (AAAs). Abdominal aortic aneurysms are a common disorder and mortality from ruptured AAAs is high. Results provide insight into the pathogenesis of abdominal aortic aneurysm.", "type": "Expression profiling by array", "pubmed_id": [ "17634102", "21493888" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE7084", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2838", "description": "male", "sample_id": [ "GSM170565", "GSM170566" ], "type": "gender", "id": "GDS2838_1" }, { "dataset_id": "GDS2838", "description": "female", "sample_id": [ "GSM170567", "GSM170568" ], "type": "gender", "id": "GDS2838_2" }, { "dataset_id": "GDS2838", "description": "abdominal aortic aneurysm", "sample_id": [ "GSM170565", "GSM170567" ], "type": "disease state", "id": "GDS2838_3" }, { "dataset_id": "GDS2838", "description": "control", "sample_id": [ "GSM170566", "GSM170568" ], "type": "disease state", "id": "GDS2838_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2838", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2838.tab", "compression": "gz" } ], [ [ "GDS2839.tab" ], { "title": "Phenylethyl isothiocyanate and N-nitrosomethylbenzylamine cotreatment effect on the esophagus", "description": "Analysis of esophagi of animals treated with the carcinogen N-nitrosomethylbenzylamine (NMBA), the chemopreventive agent phenylethyl isothiocyanate (PEITC), or both compounds. Results provide insight into effect of PEITC on the development of NMBA-induced esophageal tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "17616710", "platform": "GPL2877", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE6917", "order": "none", "update_date": "Jul 27 2007", "subsets": [ { "dataset_id": "GDS2839", "description": "control", "sample_id": [ "GSM159376", "GSM159377", "GSM159378" ], "type": "agent", "id": "GDS2839_1" }, { "dataset_id": "GDS2839", "description": "NMBA", "sample_id": [ "GSM159381", "GSM159383", "GSM159384" ], "type": "agent", "id": "GDS2839_2" }, { "dataset_id": "GDS2839", "description": "PEITC", "sample_id": [ "GSM159385", "GSM159386", "GSM159387" ], "type": "agent", "id": "GDS2839_3" }, { "dataset_id": "GDS2839", "description": "NMBA and PEITC", "sample_id": [ "GSM159388", "GSM159389", "GSM159390" ], "type": "agent", "id": "GDS2839_4" } ], "taxid": "10116", "genes": 32403, "aggregation_function": "mean", "name": "GDS2839", "version": 1.0, "instances": "12", "variables": 32405, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2839.tab", "compression": "gz" } ], [ [ "GDS2840.tab" ], { "title": "DNA electroporation effect on skeletal muscles: time course", "description": "Analysis of tibialis cranialis muscles at various time points up to 3 weeks following transfection with green fluorescent protein (GFP) using DNA electroporation. Results provide insight into the feasibility of introducing the DNA electrotransfer to muscle for clinical use.", "type": "Expression profiling by array", "pubmed_id": "17598924", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE6686", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2840", "description": "control", "sample_id": [ "GSM154212", "GSM154215", "GSM154216" ], "type": "protocol", "id": "GDS2840_1" }, { "dataset_id": "GDS2840", "description": "electroporation only", "sample_id": [ "GSM154236", "GSM154237", "GSM154238" ], "type": "protocol", "id": "GDS2840_2" }, { "dataset_id": "GDS2840", "description": "DNA injection only", "sample_id": [ "GSM154218", "GSM154222", "GSM154226" ], "type": "protocol", "id": "GDS2840_3" }, { "dataset_id": "GDS2840", "description": "DNA electroporation", "sample_id": [ "GSM154230", "GSM154233", "GSM154234", "GSM154235" ], "type": "protocol", "id": "GDS2840_4" }, { "dataset_id": "GDS2840", "description": "control", "sample_id": [ "GSM154212", "GSM154215", "GSM154216" ], "type": "time", "id": "GDS2840_5" }, { "dataset_id": "GDS2840", "description": "4 h", "sample_id": [ "GSM154222", "GSM154233", "GSM154234", "GSM154237" ], "type": "time", "id": "GDS2840_6" }, { "dataset_id": "GDS2840", "description": "48 h", "sample_id": [ "GSM154226", "GSM154235", "GSM154238" ], "type": "time", "id": "GDS2840_7" }, { "dataset_id": "GDS2840", "description": "3 wk", "sample_id": [ "GSM154218", "GSM154230", "GSM154236" ], "type": "time", "id": "GDS2840_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2840", "version": 1.0, "instances": "13", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2840.tab", "compression": "gz" } ], [ [ "GDS2841.tab" ], { "title": "Alcohol-preferring inbred strain: brain", "description": "Analysis of various CNS regions of inbred alcohol-preferring and non-alcohol preferring animals that have not been exposed to alcohol. Results provide insight into the molecular basis of the difference in alcohol preference between the two strains.", "type": "Expression profiling by array", "pubmed_id": "17517326", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "59", "value_type": "count", "reference_series": "GSE4494", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS2841", "description": "frontal cortex", "sample_id": [ "GSM100999", "GSM101000", "GSM101001", "GSM101002", "GSM101003", "GSM101004", "GSM101005", "GSM101006", "GSM101007", "GSM101008", "GSM101009" ], "type": "tissue", "id": "GDS2841_1" }, { "dataset_id": "GDS2841", "description": "caudate-putamen", "sample_id": [ "GSM101010", "GSM101011", "GSM101012", "GSM101013", "GSM101014", "GSM101015", "GSM101016", "GSM101017", "GSM101018", "GSM101019", "GSM101020", "GSM101021" ], "type": "tissue", "id": "GDS2841_2" }, { "dataset_id": "GDS2841", "description": "hippocampus", "sample_id": [ "GSM101022", "GSM101023", "GSM101024", "GSM101025", "GSM101026", "GSM101027", "GSM101028", "GSM101029", "GSM101030", "GSM101031", "GSM101032", "GSM101033" ], "type": "tissue", "id": "GDS2841_3" }, { "dataset_id": "GDS2841", "description": "amygdala", "sample_id": [ "GSM101034", "GSM101035", "GSM101036", "GSM101037", "GSM101038", "GSM101039", "GSM101040", "GSM101041", "GSM101042", "GSM101043", "GSM101044", "GSM101045" ], "type": "tissue", "id": "GDS2841_4" }, { "dataset_id": "GDS2841", "description": "accumbens", "sample_id": [ "GSM101046", "GSM101047", "GSM101048", "GSM101049", "GSM101050", "GSM101051", "GSM101052", "GSM101053", "GSM101054", "GSM101055", "GSM101056", "GSM101057" ], "type": "tissue", "id": "GDS2841_5" }, { "dataset_id": "GDS2841", "description": "alcohol preferring", "sample_id": [ "GSM100999", "GSM101000", "GSM101001", "GSM101002", "GSM101003", "GSM101010", "GSM101011", "GSM101012", "GSM101013", "GSM101014", "GSM101015", "GSM101022", "GSM101023", "GSM101024", "GSM101025", "GSM101026", "GSM101027", "GSM101034", "GSM101035", "GSM101036", "GSM101037", "GSM101038", "GSM101039", "GSM101046", "GSM101047", "GSM101048", "GSM101049", "GSM101050", "GSM101051" ], "type": "strain", "id": "GDS2841_6" }, { "dataset_id": "GDS2841", "description": "non-alcohol preferring", "sample_id": [ "GSM101004", "GSM101005", "GSM101006", "GSM101007", "GSM101008", "GSM101009", "GSM101016", "GSM101017", "GSM101018", "GSM101019", "GSM101020", "GSM101021", "GSM101028", "GSM101029", "GSM101030", "GSM101031", "GSM101032", "GSM101033", "GSM101040", "GSM101041", "GSM101042", "GSM101043", "GSM101044", "GSM101045", "GSM101052", "GSM101053", "GSM101054", "GSM101055", "GSM101056", "GSM101057" ], "type": "strain", "id": "GDS2841_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2841", "version": 1.0, "instances": "59", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2841.tab", "compression": "gz" } ], [ [ "GDS2842.tab" ], { "title": "Testicular seminoma progression", "description": "Analysis of testicular seminoma tumors at various stages of progression (pT1, pT2, pT3). Results provide insight into the pathogenesis of testicular seminoma.", "type": "Expression profiling by array", "pubmed_id": "16158187", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE8607", "order": "none", "update_date": "May 01 2008", "subsets": [ { "dataset_id": "GDS2842", "description": "normal", "sample_id": [ "GSM213467", "GSM213468", "GSM213469" ], "type": "disease state", "id": "GDS2842_1" }, { "dataset_id": "GDS2842", "description": "pT1", "sample_id": [ "GSM213470", "GSM213471", "GSM213472", "GSM213473", "GSM213474", "GSM213475", "GSM213476", "GSM213477", "GSM213478", "GSM213479", "GSM213480", "GSM213481", "GSM213482", "GSM213483", "GSM213484", "GSM213485", "GSM213486", "GSM213487", "GSM213488", "GSM213489", "GSM213490", "GSM213491" ], "type": "disease state", "id": "GDS2842_2" }, { "dataset_id": "GDS2842", "description": "pT2", "sample_id": [ "GSM213492", "GSM213493", "GSM213494", "GSM213495", "GSM213496", "GSM213497", "GSM213498", "GSM213499", "GSM213501", "GSM213502", "GSM213503", "GSM213504", "GSM213505", "GSM213506" ], "type": "disease state", "id": "GDS2842_3" }, { "dataset_id": "GDS2842", "description": "pT3", "sample_id": [ "GSM213507", "GSM213508", "GSM213509", "GSM213510" ], "type": "disease state", "id": "GDS2842_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2842", "version": 1.0, "instances": "43", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2842.tab", "compression": "gz" } ], [ [ "GDS2843.tab" ], { "title": "Mammary gland development", "description": "Analysis of mammary glands during pregnancy, lactation, and involution. Results provide insight into the molecular mechanisms regulating mammary gland development.", "type": "Expression profiling by array", "pubmed_id": "17338830", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE8191", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2843", "description": "preganancy", "sample_id": [ "GSM202666", "GSM202667", "GSM202668", "GSM202669", "GSM202670", "GSM202671", "GSM202672", "GSM202673", "GSM202674", "GSM202675", "GSM202676", "GSM202677", "GSM202678", "GSM202679", "GSM202680", "GSM202681", "GSM202682", "GSM202683", "GSM202684", "GSM202685", "GSM202686", "GSM202687", "GSM202688", "GSM202689" ], "type": "development stage", "id": "GDS2843_1" }, { "dataset_id": "GDS2843", "description": "lactation", "sample_id": [ "GSM202690", "GSM202691", "GSM202692", "GSM202693", "GSM202694", "GSM202695", "GSM202696", "GSM202697", "GSM202698", "GSM202699", "GSM202700", "GSM202701" ], "type": "development stage", "id": "GDS2843_2" }, { "dataset_id": "GDS2843", "description": "involution", "sample_id": [ "GSM202702", "GSM202703", "GSM202704", "GSM202705" ], "type": "development stage", "id": "GDS2843_3" }, { "dataset_id": "GDS2843", "description": "1 d", "sample_id": [ "GSM202666", "GSM202667", "GSM202668", "GSM202669", "GSM202690", "GSM202691", "GSM202692", "GSM202693" ], "type": "time", "id": "GDS2843_4" }, { "dataset_id": "GDS2843", "description": "3 d", "sample_id": [ "GSM202670", "GSM202671", "GSM202672", "GSM202673" ], "type": "time", "id": "GDS2843_5" }, { "dataset_id": "GDS2843", "description": "7 d", "sample_id": [ "GSM202674", "GSM202675", "GSM202676", "GSM202677" ], "type": "time", "id": "GDS2843_6" }, { "dataset_id": "GDS2843", "description": "12 d", "sample_id": [ "GSM202678", "GSM202679", "GSM202680", "GSM202681" ], "type": "time", "id": "GDS2843_7" }, { "dataset_id": "GDS2843", "description": "17 d", "sample_id": [ "GSM202682", "GSM202683", "GSM202684", "GSM202685" ], "type": "time", "id": "GDS2843_8" }, { "dataset_id": "GDS2843", "description": "19 d", "sample_id": [ "GSM202686", "GSM202687", "GSM202688", "GSM202689" ], "type": "time", "id": "GDS2843_9" }, { "dataset_id": "GDS2843", "description": "2 d", "sample_id": [ "GSM202694", "GSM202695", "GSM202696", "GSM202697", "GSM202702", "GSM202703", "GSM202704", "GSM202705" ], "type": "time", "id": "GDS2843_10" }, { "dataset_id": "GDS2843", "description": "9 d", "sample_id": [ "GSM202698", "GSM202699", "GSM202700", "GSM202701" ], "type": "time", "id": "GDS2843_11" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2843", "version": 1.0, "instances": "40", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2843.tab", "compression": "gz" } ], [ [ "GDS2846.tab" ], { "title": "MicroRNA miR-124 expression effect on neuronal cell line", "description": "Analysis of neuroblastoma CAD cells expressing neuron-specific microRNA miR-124. MicroRNAs have been implicated in the development of the nervous system (NS). Results provide insight into the function of miR-124 in neuronal cells.", "type": "Expression profiling by array", "pubmed_id": "17679093", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE8498", "order": "none", "update_date": "May 05 2008", "subsets": [ { "dataset_id": "GDS2846", "description": "control", "sample_id": [ "GSM210755", "GSM210756", "GSM210757" ], "type": "protocol", "id": "GDS2846_1" }, { "dataset_id": "GDS2846", "description": "miR-124 expression", "sample_id": [ "GSM210758", "GSM210759", "GSM210760" ], "type": "protocol", "id": "GDS2846_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2846", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2846.tab", "compression": "gz" } ], [ [ "GDS2847.tab" ], { "title": "Anisomycin effect on leukemia cell line: time course", "description": "Analysis of myeloid leukemia U937 cells treated with anisomycin for various time points up to 6 hours. Anisomycin is a potent inducer of apoptosis. Results provide insight into the mechanism of action of anisomycin in inducing apoptosis.", "type": "Expression profiling by array", "pubmed_id": "18241849", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE8229", "order": "ordered", "update_date": "May 05 2008", "subsets": [ { "dataset_id": "GDS2847", "description": "0 h", "sample_id": [ "GSM203595" ], "type": "time", "id": "GDS2847_1" }, { "dataset_id": "GDS2847", "description": "1 h", "sample_id": [ "GSM203596" ], "type": "time", "id": "GDS2847_2" }, { "dataset_id": "GDS2847", "description": "2 h", "sample_id": [ "GSM203597" ], "type": "time", "id": "GDS2847_3" }, { "dataset_id": "GDS2847", "description": "3 h", "sample_id": [ "GSM203598" ], "type": "time", "id": "GDS2847_4" }, { "dataset_id": "GDS2847", "description": "6 h", "sample_id": [ "GSM203599" ], "type": "time", "id": "GDS2847_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2847", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2847.tab", "compression": "gz" } ], [ [ "GDS2848.tab" ], { "title": "Notch1 deficiency effect on hair follicles", "description": "Analysis of Notch1-deficient hair follicles from the skin of transgenic animals. Results provide insight into the molecular mechanisms underlying the lowered mitotic index and increased apoptosis observed in Notch1-deficient hair follicles.", "type": "Expression profiling by array", "pubmed_id": "17611229", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6867", "order": "none", "update_date": "May 05 2008", "subsets": [ { "dataset_id": "GDS2848", "description": "transgenic", "sample_id": [ "GSM158357", "GSM158359", "GSM158360", "GSM158361" ], "type": "strain", "id": "GDS2848_1" }, { "dataset_id": "GDS2848", "description": "wild type", "sample_id": [ "GSM158362", "GSM158363" ], "type": "strain", "id": "GDS2848_2" }, { "dataset_id": "GDS2848", "description": "no functional Notch1", "sample_id": [ "GSM158357", "GSM158360" ], "type": "other", "id": "GDS2848_3" }, { "dataset_id": "GDS2848", "description": "functional Notch", "sample_id": [ "GSM158359", "GSM158361", "GSM158362", "GSM158363" ], "type": "other", "id": "GDS2848_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2848", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2848.tab", "compression": "gz" } ], [ [ "GDS285.tab" ], { "title": "Ethynyl estradiol estrogen effect in uterus", "description": "Temporal examination of ethynyl estradiol (EE) in uterus of immature, ovariectomized C57BL/6. 0.1 mg/kg EE or vehicle administered and uteri harvested at 0, 2, 8, 12, or 24 hours, or three daily doses administered and uteri harvested at 72 hours.", "type": "Expression profiling by array", "pubmed_id": "12915738", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE280", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS285", "description": "no agent", "sample_id": [ "GSM3890" ], "type": "agent", "id": "GDS285_1" }, { "dataset_id": "GDS285", "description": "sesame oil vehicle", "sample_id": [ "GSM3870", "GSM3871", "GSM3872", "GSM3873", "GSM3874", "GSM3875", "GSM3876", "GSM3877", "GSM3878", "GSM3879" ], "type": "agent", "id": "GDS285_2" }, { "dataset_id": "GDS285", "description": "ethynyl estradiol", "sample_id": [ "GSM3880", "GSM3881", "GSM3882", "GSM3883", "GSM3884", "GSM3885", "GSM3886", "GSM3887", "GSM3888", "GSM3889" ], "type": "agent", "id": "GDS285_3" }, { "dataset_id": "GDS285", "description": "0 hour", "sample_id": [ "GSM3890" ], "type": "time", "id": "GDS285_4" }, { "dataset_id": "GDS285", "description": "2 hour", "sample_id": [ "GSM3870", "GSM3871", "GSM3880", "GSM3881" ], "type": "time", "id": "GDS285_5" }, { "dataset_id": "GDS285", "description": "8 hour", "sample_id": [ "GSM3872", "GSM3873", "GSM3882", "GSM3883" ], "type": "time", "id": "GDS285_6" }, { "dataset_id": "GDS285", "description": "12 hour", "sample_id": [ "GSM3874", "GSM3875", "GSM3884", "GSM3885" ], "type": "time", "id": "GDS285_7" }, { "dataset_id": "GDS285", "description": "24 hour", "sample_id": [ "GSM3876", "GSM3877", "GSM3886", "GSM3887" ], "type": "time", "id": "GDS285_8" }, { "dataset_id": "GDS285", "description": "72 hour", "sample_id": [ "GSM3878", "GSM3879", "GSM3888", "GSM3889" ], "type": "time", "id": "GDS285_9" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS285", "version": 1.0, "instances": "21", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS285.tab", "compression": "gz" } ], [ [ "GDS2850.tab" ], { "title": "Brain trauma model: time course (MG-U74A)", "description": "Analysis of brain at various time points up to 72 hours following lateral controlled cortical impact injury. Delayed cell death following trauma results in brain damage. Results provide insight into the mechanisms underlying brain damage after traumatic injury.", "type": "Expression profiling by array", "pubmed_id": "14588109", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE2392", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2850", "description": "sham", "sample_id": [ "GSM44468", "GSM44469", "GSM44474", "GSM44476", "GSM44479", "GSM44499", "GSM44501", "GSM44505", "GSM44506", "GSM44514" ], "type": "protocol", "id": "GDS2850_1" }, { "dataset_id": "GDS2850", "description": "lateral controlled cortical impact injury", "sample_id": [ "GSM44463", "GSM44464", "GSM44465", "GSM44470", "GSM44472", "GSM44475", "GSM44487", "GSM44502", "GSM44503", "GSM44504", "GSM44510", "GSM44512" ], "type": "protocol", "id": "GDS2850_2" }, { "dataset_id": "GDS2850", "description": "0 h", "sample_id": [ "GSM44469", "GSM44476" ], "type": "time", "id": "GDS2850_3" }, { "dataset_id": "GDS2850", "description": "4 h", "sample_id": [ "GSM44465", "GSM44499", "GSM44502", "GSM44505", "GSM44510" ], "type": "time", "id": "GDS2850_4" }, { "dataset_id": "GDS2850", "description": "8 h", "sample_id": [ "GSM44487", "GSM44506", "GSM44512", "GSM44514", "GSM44475" ], "type": "time", "id": "GDS2850_5" }, { "dataset_id": "GDS2850", "description": "24 h", "sample_id": [ "GSM44463", "GSM44464", "GSM44468", "GSM44503", "GSM44479" ], "type": "time", "id": "GDS2850_6" }, { "dataset_id": "GDS2850", "description": "72 h", "sample_id": [ "GSM44470", "GSM44472", "GSM44474", "GSM44501", "GSM44504" ], "type": "time", "id": "GDS2850_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2850", "version": 1.0, "instances": "22", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2850.tab", "compression": "gz" } ], [ [ "GDS2851.tab" ], { "title": "Brain trauma model: time course (RG-U34A)", "description": "Analysis of brain at various time points up to 21 days following lateral fluid percussion-induced brain injury. Delayed cell death following trauma results in brain damage. Results provide insight into the mechanisms underlying brain damage after traumatic injury.", "type": "Expression profiling by array", "pubmed_id": "14588109", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE2392", "order": "none", "update_date": "Aug 20 2007", "subsets": [ { "dataset_id": "GDS2851", "description": "sham", "sample_id": [ "GSM44467", "GSM44478", "GSM44483", "GSM44485", "GSM44486", "GSM44488", "GSM44489", "GSM44490", "GSM44494", "GSM44495", "GSM44496", "GSM44507", "GSM44508", "GSM44509", "GSM44511", "GSM44513", "GSM44528", "GSM44529", "GSM44530" ], "type": "protocol", "id": "GDS2851_1" }, { "dataset_id": "GDS2851", "description": "lateral fluid percussion-induced injury", "sample_id": [ "GSM44466", "GSM44471", "GSM44473", "GSM44477", "GSM44480", "GSM44481", "GSM44482", "GSM44484", "GSM44491", "GSM44492", "GSM44493", "GSM44497", "GSM44498", "GSM44500", "GSM44520", "GSM44531", "GSM44532", "GSM44533", "GSM44549", "GSM44667" ], "type": "protocol", "id": "GDS2851_2" }, { "dataset_id": "GDS2851", "description": "0 h", "sample_id": [ "GSM44478", "GSM44496", "GSM44513" ], "type": "time", "id": "GDS2851_3" }, { "dataset_id": "GDS2851", "description": "0.5 h", "sample_id": [ "GSM44473", "GSM44480", "GSM44488", "GSM44489", "GSM44492", "GSM44494", "GSM44500", "GSM44509", "GSM44533" ], "type": "time", "id": "GDS2851_4" }, { "dataset_id": "GDS2851", "description": "4 h", "sample_id": [ "GSM44466", "GSM44498", "GSM44667", "GSM44486", "GSM44511", "GSM44528", "GSM44529" ], "type": "time", "id": "GDS2851_5" }, { "dataset_id": "GDS2851", "description": "8 h", "sample_id": [ "GSM44467", "GSM44491", "GSM44530", "GSM44531", "GSM44532" ], "type": "time", "id": "GDS2851_6" }, { "dataset_id": "GDS2851", "description": "24 h", "sample_id": [ "GSM44477", "GSM44482", "GSM44490", "GSM44493", "GSM44508" ], "type": "time", "id": "GDS2851_7" }, { "dataset_id": "GDS2851", "description": "72 h", "sample_id": [ "GSM44483", "GSM44484", "GSM44485", "GSM44520", "GSM44549" ], "type": "time", "id": "GDS2851_8" }, { "dataset_id": "GDS2851", "description": "504 h", "sample_id": [ "GSM44471", "GSM44481", "GSM44497", "GSM44495", "GSM44507" ], "type": "time", "id": "GDS2851_9" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS2851", "version": 1.0, "instances": "39", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2851.tab", "compression": "gz" } ], [ [ "GDS2852.tab" ], { "title": "Interleukin 13 effect on bronchial cell line: time course", "description": "Analysis of bronchial A549 cells at various time points up to 24 hours following treatment with the cytokine interleukin 13 (IL-13). IL-13 contributes to the pathogenesis of asthma.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE3183", "order": "none", "update_date": "Aug 21 2007", "subsets": [ { "dataset_id": "GDS2852", "description": "control", "sample_id": [ "GSM47462", "GSM47465", "GSM47468", "GSM47469", "GSM47470", "GSM47472" ], "type": "agent", "id": "GDS2852_1" }, { "dataset_id": "GDS2852", "description": "IL-13", "sample_id": [ "GSM47459", "GSM47460", "GSM47461", "GSM47463", "GSM47464", "GSM47466", "GSM47467", "GSM47471", "GSM47473" ], "type": "agent", "id": "GDS2852_2" }, { "dataset_id": "GDS2852", "description": "0 h", "sample_id": [ "GSM47462", "GSM47468", "GSM47472" ], "type": "time", "id": "GDS2852_3" }, { "dataset_id": "GDS2852", "description": "4 h", "sample_id": [ "GSM47461", "GSM47464", "GSM47473" ], "type": "time", "id": "GDS2852_4" }, { "dataset_id": "GDS2852", "description": "12 h", "sample_id": [ "GSM47459", "GSM47460", "GSM47466" ], "type": "time", "id": "GDS2852_5" }, { "dataset_id": "GDS2852", "description": "24 h", "sample_id": [ "GSM47463", "GSM47465", "GSM47467", "GSM47469", "GSM47470", "GSM47471" ], "type": "time", "id": "GDS2852_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2852", "version": 1.0, "instances": "15", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2852.tab", "compression": "gz" } ], [ [ "GDS2853.tab" ], { "title": "Low and high grade astrocytomas", "description": "Comparison of low and high grade astrocytoma brain tumors. Results provide insight into the molecular differences between the two types of tumors.", "type": "Expression profiling by array", "pubmed_id": "12702575", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE3185", "order": "none", "update_date": "Jun 20 2013", "subsets": [ { "dataset_id": "GDS2853", "description": "cell line", "sample_id": [ "GSM48598", "GSM48617" ], "type": "other", "id": "GDS2853_1" }, { "dataset_id": "GDS2853", "description": "tumor", "sample_id": [ "GSM48599", "GSM48600", "GSM48601", "GSM48602", "GSM48603", "GSM48604", "GSM48605", "GSM48606", "GSM48607", "GSM48608", "GSM48609", "GSM48614", "GSM48615", "GSM48616" ], "type": "other", "id": "GDS2853_2" }, { "dataset_id": "GDS2853", "description": "control", "sample_id": [ "GSM48598", "GSM48617" ], "type": "disease state", "id": "GDS2853_3" }, { "dataset_id": "GDS2853", "description": "low grade astrocytoma", "sample_id": [ "GSM48600", "GSM48601", "GSM48602", "GSM48604", "GSM48607", "GSM48608", "GSM48614", "GSM48616" ], "type": "disease state", "id": "GDS2853_4" }, { "dataset_id": "GDS2853", "description": "high grade astrocytoma", "sample_id": [ "GSM48599", "GSM48603", "GSM48605", "GSM48606", "GSM48609", "GSM48615" ], "type": "disease state", "id": "GDS2853_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2853", "version": 1.0, "instances": "16", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2853.tab", "compression": "gz" } ], [ [ "GDS2854.tab" ], { "title": "Myogenic transcription factor MyoD mutant expression effect on embryonic fibroblast: time course", "description": "Analysis of embryonic fibroblasts at various time points up to 24 hours following transcriptional induction of a mutant form of the myogenic transcription factor MyoD. MyoD altered at lysine residues 99, 102, and 104, rendering it not acetylatable.", "type": "Expression profiling by array", "pubmed_id": "17965412", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE6487", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2854", "description": "control", "sample_id": [ "GSM148446", "GSM148441", "GSM148447", "GSM148424", "GSM148444", "GSM148442", "GSM148433", "GSM148438", "GSM148432" ], "type": "protocol", "id": "GDS2854_1" }, { "dataset_id": "GDS2854", "description": "wild type MyoD expression", "sample_id": [ "GSM148448", "GSM148435", "GSM148443", "GSM148436", "GSM148449", "GSM148425", "GSM148426", "GSM148422", "GSM148427", "GSM148428", "GSM148450", "GSM148437" ], "type": "protocol", "id": "GDS2854_2" }, { "dataset_id": "GDS2854", "description": "mutant MyoD expression", "sample_id": [ "GSM148421", "GSM148439", "GSM148423", "GSM148429", "GSM148434", "GSM148445", "GSM148430", "GSM148431", "GSM148440" ], "type": "protocol", "id": "GDS2854_3" }, { "dataset_id": "GDS2854", "description": "0 h", "sample_id": [ "GSM148448", "GSM148435", "GSM148443" ], "type": "time", "id": "GDS2854_4" }, { "dataset_id": "GDS2854", "description": "6 h", "sample_id": [ "GSM148430", "GSM148431", "GSM148440", "GSM148433", "GSM148438", "GSM148432", "GSM148428", "GSM148450", "GSM148437" ], "type": "time", "id": "GDS2854_5" }, { "dataset_id": "GDS2854", "description": "12 h", "sample_id": [ "GSM148421", "GSM148439", "GSM148423", "GSM148446", "GSM148441", "GSM148447", "GSM148436", "GSM148449", "GSM148425" ], "type": "time", "id": "GDS2854_6" }, { "dataset_id": "GDS2854", "description": "24 h", "sample_id": [ "GSM148429", "GSM148434", "GSM148445", "GSM148424", "GSM148444", "GSM148442", "GSM148426", "GSM148422", "GSM148427" ], "type": "time", "id": "GDS2854_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2854", "version": 1.0, "instances": "30", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2854.tab", "compression": "gz" } ], [ [ "GDS2855.tab" ], { "title": "Various muscle diseases (HG-U133B)", "description": "Analysis of muscle biopsy specimens from patients with various muscle diseases. Results provide insight into the diagnosis and pathogenesis of muscle diseases.", "type": "Expression profiling by array", "pubmed_id": [ "16478798", "25313409" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "119", "value_type": "count", "reference_series": "GSE3307", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS2855", "description": "normal", "sample_id": [ "GSM120719", "GSM120720", "GSM120765", "GSM120767", "GSM120784", "GSM121400", "GSM121401", "GSM121402", "GSM121403", "GSM121404", "GSM121405", "GSM121406", "GSM121408", "GSM121409", "GSM121410", "GSM121412", "GSM121413", "GSM121414", "GSM121415", "GSM121416" ], "type": "disease state", "id": "GDS2855_1" }, { "dataset_id": "GDS2855", "description": "acute quadriplegic myopathy", "sample_id": [ "GSM120591", "GSM120594", "GSM120718" ], "type": "disease state", "id": "GDS2855_2" }, { "dataset_id": "GDS2855", "description": "juvenile dermatomyositis", "sample_id": [ "GSM121205", "GSM121206", "GSM121207", "GSM121208", "GSM121209", "GSM121210", "GSM121211", "GSM121212", "GSM121213", "GSM121214", "GSM121215", "GSM121216", "GSM121217", "GSM121218", "GSM121234", "GSM121243", "GSM121245", "GSM121246", "GSM121247", "GSM121248" ], "type": "disease state", "id": "GDS2855_3" }, { "dataset_id": "GDS2855", "description": "amyotophic lateral sclerosis", "sample_id": [ "GSM120744", "GSM120745", "GSM120746", "GSM120747", "GSM120748", "GSM120749", "GSM120750", "GSM120751", "GSM120752" ], "type": "disease state", "id": "GDS2855_4" }, { "dataset_id": "GDS2855", "description": "spastic paraplegia", "sample_id": [ "GSM121336", "GSM121339", "GSM121349", "GSM121355" ], "type": "disease state", "id": "GDS2855_5" }, { "dataset_id": "GDS2855", "description": "Emery-Dreifuss muscular dystrophy", "sample_id": [ "GSM121330", "GSM121335", "GSM121337", "GSM121338", "GSM121341", "GSM121342", "GSM121343", "GSM121344", "GSM121346", "GSM121347", "GSM121348", "GSM121350", "GSM121352", "GSM121354", "GSM120757", "GSM120779", "GSM120780", "GSM120766", "GSM120770", "GSM121102", "GSM121203", "GSM121204" ], "type": "disease state", "id": "GDS2855_6" }, { "dataset_id": "GDS2855", "description": "Becker muscular dystrophy", "sample_id": [ "GSM120753", "GSM120761", "GSM120768", "GSM120781", "GSM120788" ], "type": "disease state", "id": "GDS2855_7" }, { "dataset_id": "GDS2855", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM120760", "GSM120763", "GSM120764", "GSM120777", "GSM120786", "GSM121329", "GSM121331", "GSM121333", "GSM121345", "GSM121356" ], "type": "disease state", "id": "GDS2855_8" }, { "dataset_id": "GDS2855", "description": "Calpain 3 mutation", "sample_id": [ "GSM120754", "GSM120759", "GSM120762", "GSM120775", "GSM120776", "GSM120782", "GSM120789", "GSM120790", "GSM120791" ], "type": "disease state", "id": "GDS2855_9" }, { "dataset_id": "GDS2855", "description": "dysferlin mutation", "sample_id": [ "GSM120755", "GSM120756", "GSM120769", "GSM120778", "GSM120792", "GSM121332", "GSM121334", "GSM121340", "GSM121351", "GSM121353" ], "type": "disease state", "id": "GDS2855_10" }, { "dataset_id": "GDS2855", "description": "FKRP mutation", "sample_id": [ "GSM120758", "GSM120771", "GSM120772", "GSM120773", "GSM120774", "GSM120783", "GSM120787" ], "type": "disease state", "id": "GDS2855_11" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2855", "version": 1.0, "instances": "119", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2855.tab", "compression": "gz" } ], [ [ "GDS2856.tab" ], { "title": "Peripheral blood-derived monocytes response to lipopolysaccharide: time course", "description": "Analysis of peripheral blood-derived monocytes at various time points up to 24 hours following treatment with lipopolysaccharide. Results compared with those obtained from Massively Parallel Signature Sequencing.", "type": "Expression profiling by array", "pubmed_id": [ "15668391", "17913878" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE5504", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2856", "description": "basal", "sample_id": [ "GSM126988", "GSM126993" ], "type": "time", "id": "GDS2856_1" }, { "dataset_id": "GDS2856", "description": "2 h", "sample_id": [ "GSM126994", "GSM126995" ], "type": "time", "id": "GDS2856_2" }, { "dataset_id": "GDS2856", "description": "4 h", "sample_id": [ "GSM126996", "GSM126997" ], "type": "time", "id": "GDS2856_3" }, { "dataset_id": "GDS2856", "description": "8 h", "sample_id": [ "GSM126998", "GSM126999" ], "type": "time", "id": "GDS2856_4" }, { "dataset_id": "GDS2856", "description": "24 h", "sample_id": [ "GSM127010", "GSM127011" ], "type": "time", "id": "GDS2856_5" }, { "dataset_id": "GDS2856", "description": "control", "sample_id": [ "GSM126988", "GSM126993" ], "type": "agent", "id": "GDS2856_6" }, { "dataset_id": "GDS2856", "description": "lipopolysaccharide", "sample_id": [ "GSM126994", "GSM126995", "GSM126996", "GSM126997", "GSM126998", "GSM126999", "GSM127010", "GSM127011" ], "type": "agent", "id": "GDS2856_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2856", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2856.tab", "compression": "gz" } ], [ [ "GDS2857.tab" ], { "title": "Taf7l deficiency effect on the testis", "description": "Analysis of testes of animals lacking Taf7l. TAF7L is an X-linked germ cell-specific paralog of TAF7, which is a generally expressed component of TFIID. Results provide insight into the role of Taf7l in spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "17242199", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5510", "order": "none", "update_date": "Jul 29 2008", "subsets": [ { "dataset_id": "GDS2857", "description": "wild type", "sample_id": [ "GSM127093", "GSM127094" ], "type": "genotype/variation", "id": "GDS2857_1" }, { "dataset_id": "GDS2857", "description": "Taf7l mutant", "sample_id": [ "GSM127095", "GSM127096" ], "type": "genotype/variation", "id": "GDS2857_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2857", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2857.tab", "compression": "gz" } ], [ [ "GDS2858.tab" ], { "title": "Myeloid-related protein 8 and 14 effect on microvascular endothelial cells", "description": "Analysis of microvascular endothelial cells (ECs) treated with the myeloid-related protein 8 (MRP8) and 14 (MRP14), proteins that form heterodimers secreted by phagocytes at inflammatory sites. Results provide insight into the role of MRP8 and MRP14 in EC cell death during inflammation.", "type": "Expression profiling by array", "pubmed_id": "17095618", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5474", "order": "none", "update_date": "Aug 13 2007", "subsets": [ { "dataset_id": "GDS2858", "description": "control", "sample_id": [ "GSM125359", "GSM125360", "GSM125361", "GSM125362" ], "type": "agent", "id": "GDS2858_1" }, { "dataset_id": "GDS2858", "description": "MRP8 MRP14", "sample_id": [ "GSM125363", "GSM125364", "GSM125365", "GSM125366" ], "type": "agent", "id": "GDS2858_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2858", "version": 1.0, "instances": "8", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2858.tab", "compression": "gz" } ], [ [ "GDS2859.tab" ], { "title": "Splenocyte response to infection by virB mutant Brucella strains", "description": "Analysis of splenocytes from animals infected with virB mutant Brucella arbortus strains. The virB operon encodes a Type IV secretion system (T4SS) essential for the intracellular survival and persistent infection by Brucella species. Results provide insight into the role of T4SS in infections.", "type": "Expression profiling by array", "pubmed_id": "17441987", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE6810", "order": "none", "update_date": "Jun 13 2008", "subsets": [ { "dataset_id": "GDS2859", "description": "uninfected", "sample_id": [ "GSM155205", "GSM155248" ], "type": "infection", "id": "GDS2859_1" }, { "dataset_id": "GDS2859", "description": "B. arbortus", "sample_id": [ "GSM155249", "GSM155251", "GSM155252", "GSM155253", "GSM155254", "GSM155255" ], "type": "infection", "id": "GDS2859_2" }, { "dataset_id": "GDS2859", "description": "B. melitensis", "sample_id": [ "GSM155256", "GSM155257" ], "type": "infection", "id": "GDS2859_3" }, { "dataset_id": "GDS2859", "description": "wild type", "sample_id": [ "GSM155249", "GSM155251", "GSM155256", "GSM155257" ], "type": "genotype/variation", "id": "GDS2859_4" }, { "dataset_id": "GDS2859", "description": "virB disruption", "sample_id": [ "GSM155252", "GSM155253" ], "type": "genotype/variation", "id": "GDS2859_5" }, { "dataset_id": "GDS2859", "description": "virB deletion", "sample_id": [ "GSM155254", "GSM155255" ], "type": "genotype/variation", "id": "GDS2859_6" }, { "dataset_id": "GDS2859", "description": "control", "sample_id": [ "GSM155205", "GSM155248" ], "type": "genotype/variation", "id": "GDS2859_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2859", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2859.tab", "compression": "gz" } ], [ [ "GDS2860.tab" ], { "title": "Aldosterone-producing adeonoma", "description": "Analysis of aldosterone-producing adenoma (APA) samples from patients with primary hyperaldosteronism (PA). The source of aldosterone in many patients with PA is unilateral APA. Results provide insight into the mechanisms causing elevated aldosterone production in APA.", "type": "Expression profiling by array", "pubmed_id": "17911395", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE8514", "order": "none", "update_date": "Aug 14 2007", "subsets": [ { "dataset_id": "GDS2860", "description": "control", "sample_id": [ "GSM211446", "GSM211447", "GSM211448", "GSM211449", "GSM211450" ], "type": "disease state", "id": "GDS2860_1" }, { "dataset_id": "GDS2860", "description": "aldosterone-producing adenoma", "sample_id": [ "GSM211451", "GSM211452", "GSM211453", "GSM211454", "GSM211455", "GSM211456", "GSM211457", "GSM211458", "GSM211459", "GSM211460" ], "type": "disease state", "id": "GDS2860_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2860", "version": 1.0, "instances": "15", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2860.tab", "compression": "gz" } ], [ [ "GDS2861.tab" ], { "title": "X-Box binding protein overexpression effect on breast cancer cell line", "description": "Analysis of MCF7 breast cancer (BC) cells overexpressing spliced X-box binding protein-1 (XBP1), a transcription factor that participates in the unfolded protein response (UPR). Results provide insight into the role of XBP1 and the UPR in estrogen and antiestrogen responsiveness in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "17660348", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE8562", "order": "none", "update_date": "Jun 13 2008", "subsets": [ { "dataset_id": "GDS2861", "description": "control", "sample_id": [ "GSM212605", "GSM212606", "GSM212607" ], "type": "protocol", "id": "GDS2861_1" }, { "dataset_id": "GDS2861", "description": "XBP1 overexpression", "sample_id": [ "GSM212608", "GSM212609", "GSM212610" ], "type": "protocol", "id": "GDS2861_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2861", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2861.tab", "compression": "gz" } ], [ [ "GDS2862.tab" ], { "title": "Hypothalamus during normal female sexual development", "description": "Analysis of hypothalami from juvenile, early pubertal, and late pubertal female animals. Results provide insight into the role of the hypothalamus in controlling the onset of puberty.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8310", "order": "ordered", "update_date": "Aug 14 2007", "subsets": [ { "dataset_id": "GDS2862", "description": "juvenile", "sample_id": [ "GSM206008", "GSM206009", "GSM206010" ], "type": "development stage", "id": "GDS2862_1" }, { "dataset_id": "GDS2862", "description": "early puberty", "sample_id": [ "GSM206011", "GSM206012", "GSM206013" ], "type": "development stage", "id": "GDS2862_2" }, { "dataset_id": "GDS2862", "description": "later puberty", "sample_id": [ "GSM206014", "GSM206015", "GSM206016" ], "type": "development stage", "id": "GDS2862_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2862", "version": 1.0, "instances": "9", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2862.tab", "compression": "gz" } ], [ [ "GDS2863.tab" ], { "title": "Tienilic acid effect on the liver: time course", "description": "Analysis of livers from animals 6 and 24 hours following treatment with tienilic acid. Results provide insight into the molecular basis of tienilic acid associated hepatotoxicity.", "type": "Expression profiling by array", "pubmed_id": "18958736", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE8252", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2863", "description": "control", "sample_id": [ "GSM205147", "GSM205150" ], "type": "agent", "id": "GDS2863_1" }, { "dataset_id": "GDS2863", "description": "tienilic acid", "sample_id": [ "GSM205148", "GSM205149", "GSM205151", "GSM205152" ], "type": "agent", "id": "GDS2863_2" }, { "dataset_id": "GDS2863", "description": "6 h", "sample_id": [ "GSM205147", "GSM205148", "GSM205149" ], "type": "time", "id": "GDS2863_3" }, { "dataset_id": "GDS2863", "description": "24 h", "sample_id": [ "GSM205150", "GSM205151", "GSM205152" ], "type": "time", "id": "GDS2863_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2863", "version": 1.0, "instances": "6", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2863.tab", "compression": "gz" } ], [ [ "GDS2864.tab" ], { "title": "RhoGDIbeta depletion effect on breast cancer cell line", "description": "Analysis of MDA-MB-231 breast cancer cells following RhoGDIbeta knockdown. RhoGDIbeta is a Rho guanine nucleotide dissociation inhibitor (RhoGDI) expressed in tumor cells. RhoGDIs negatively regulate the activity of Rho GTPases.", "type": "Expression profiling by array", "pubmed_id": "18006811", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8087", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2864", "description": "control", "sample_id": [ "GSM200678", "GSM200681", "GSM200683" ], "type": "protocol", "id": "GDS2864_1" }, { "dataset_id": "GDS2864", "description": "RhoGDIbeta depletion", "sample_id": [ "GSM200680", "GSM200682", "GSM200684" ], "type": "protocol", "id": "GDS2864_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2864", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2864.tab", "compression": "gz" } ], [ [ "GDS2865.tab" ], { "title": "Metastatic prostate tumor model", "description": "Comparison of poorly and highly metastatic prostate subcutaneous tumors derived from xenotransplanted human PC-3 prostate cancer cells. Results provide insight into the molecular mechanisms contributing to prostate cancer metastasis.", "type": "Expression profiling by array", "pubmed_id": "17640904", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7930", "order": "none", "update_date": "Jul 29 2008", "subsets": [ { "dataset_id": "GDS2865", "description": "poorly metastatic", "sample_id": [ "GSM155023", "GSM155024", "GSM155025" ], "type": "disease state", "id": "GDS2865_1" }, { "dataset_id": "GDS2865", "description": "highly metastatic", "sample_id": [ "GSM155026", "GSM155027", "GSM155028" ], "type": "disease state", "id": "GDS2865_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2865", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2865.tab", "compression": "gz" } ], [ [ "GDS2866.tab" ], { "title": "Monocyte-derived macrophages of chronic obstructive pulmonary disease patients response to fine and ultrafine particles", "description": "Analysis of monocyte-derived macrophages from chronic obstructive pulmonary disease (COPD) patients after in vitro treatment with a mix of fine titanium dioxide (TiO2) and ultrafine Printex 90 particles, or lipopolysaccharide (LPS). TiO2 and Printex 90 are used in the manufacture of many products.", "type": "Expression profiling by array", "pubmed_id": "18084737", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE8608", "order": "none", "update_date": "Jul 29 2008", "subsets": [ { "dataset_id": "GDS2866", "description": "healthy", "sample_id": [ "GSM213500", "GSM213511", "GSM213512" ], "type": "disease state", "id": "GDS2866_1" }, { "dataset_id": "GDS2866", "description": "COPD", "sample_id": [ "GSM213464", "GSM213465", "GSM213466" ], "type": "disease state", "id": "GDS2866_2" }, { "dataset_id": "GDS2866", "description": "untreated", "sample_id": [ "GSM213464", "GSM213500" ], "type": "agent", "id": "GDS2866_3" }, { "dataset_id": "GDS2866", "description": "LPS", "sample_id": [ "GSM213511", "GSM213465" ], "type": "agent", "id": "GDS2866_4" }, { "dataset_id": "GDS2866", "description": "particles", "sample_id": [ "GSM213466", "GSM213512" ], "type": "agent", "id": "GDS2866_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2866", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2866.tab", "compression": "gz" } ], [ [ "GDS2867.tab" ], { "title": "TAp63alpha-Q540L mutant protein expression", "description": "Analysis of H1299 cells expressing the TAp63alpha-Q540L mutant protein. TAp63alpha-Q540L is a form of p63 that contains a missense mutation in the SAM domain. Mutations in the SAM domain of p63 are associated with Hay-Wells syndrome.", "type": "Expression profiling by array", "pubmed_id": "16319531", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE8646", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2867", "description": "wild type", "sample_id": [ "GSM214186", "GSM214187", "GSM214200", "GSM214245", "GSM214246", "GSM214248" ], "type": "genotype/variation", "id": "GDS2867_1" }, { "dataset_id": "GDS2867", "description": "TAp63alpha-Q540L mutant", "sample_id": [ "GSM214181", "GSM214184", "GSM214202", "GSM214243", "GSM214244" ], "type": "genotype/variation", "id": "GDS2867_2" }, { "dataset_id": "GDS2867", "description": "control", "sample_id": [ "GSM214245", "GSM214246", "GSM214248", "GSM214202", "GSM214243", "GSM214244" ], "type": "protocol", "id": "GDS2867_3" }, { "dataset_id": "GDS2867", "description": "TAp63 alpha expression", "sample_id": [ "GSM214186", "GSM214187", "GSM214200", "GSM214181", "GSM214184" ], "type": "protocol", "id": "GDS2867_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2867", "version": 1.0, "instances": "11", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2867.tab", "compression": "gz" } ], [ [ "GDS2868.tab" ], { "title": "Inadequate dietary protein intake effect on the skeletal muscle", "description": "Analysis of vastus lateralis skeletal muscle biopsies from older males and females (aged 55-80 years) before and during a diet inadequate in proteins. Results provide insight into the molecular changes in skeletal muscles brought about by inadequate dietary protein intake.", "type": "Expression profiling by array", "pubmed_id": "17490972", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE8441", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2868", "description": "adequate protein", "sample_id": [ "GSM209811", "GSM209813", "GSM209815", "GSM209817", "GSM209819", "GSM209821", "GSM209823", "GSM209825", "GSM209827", "GSM209829", "GSM209831" ], "type": "protocol", "id": "GDS2868_1" }, { "dataset_id": "GDS2868", "description": "inadequate protein", "sample_id": [ "GSM209812", "GSM209814", "GSM209816", "GSM209818", "GSM209820", "GSM209822", "GSM209824", "GSM209826", "GSM209828", "GSM209830", "GSM209832" ], "type": "protocol", "id": "GDS2868_2" }, { "dataset_id": "GDS2868", "description": "male", "sample_id": [ "GSM209811", "GSM209812", "GSM209813", "GSM209814", "GSM209815", "GSM209816", "GSM209817", "GSM209818", "GSM209819", "GSM209820" ], "type": "gender", "id": "GDS2868_3" }, { "dataset_id": "GDS2868", "description": "female", "sample_id": [ "GSM209821", "GSM209822", "GSM209823", "GSM209824", "GSM209825", "GSM209826", "GSM209827", "GSM209828", "GSM209829", "GSM209830", "GSM209831", "GSM209832" ], "type": "gender", "id": "GDS2868_4" }, { "dataset_id": "GDS2868", "description": "1", "sample_id": [ "GSM209811", "GSM209812" ], "type": "individual", "id": "GDS2868_5" }, { "dataset_id": "GDS2868", "description": "2", "sample_id": [ "GSM209813", "GSM209814" ], "type": "individual", "id": "GDS2868_6" }, { "dataset_id": "GDS2868", "description": "3", "sample_id": [ "GSM209815", "GSM209816" ], "type": "individual", "id": "GDS2868_7" }, { "dataset_id": "GDS2868", "description": "4", "sample_id": [ "GSM209817", "GSM209818" ], "type": "individual", "id": "GDS2868_8" }, { "dataset_id": "GDS2868", "description": "5", "sample_id": [ "GSM209819", "GSM209820" ], "type": "individual", "id": "GDS2868_9" }, { "dataset_id": "GDS2868", "description": "1", "sample_id": [ "GSM209821", "GSM209822" ], "type": "individual", "id": "GDS2868_10" }, { "dataset_id": "GDS2868", "description": "2", "sample_id": [ "GSM209823", "GSM209824" ], "type": "individual", "id": "GDS2868_11" }, { "dataset_id": "GDS2868", "description": "3", "sample_id": [ "GSM209825", "GSM209826" ], "type": "individual", "id": "GDS2868_12" }, { "dataset_id": "GDS2868", "description": "4", "sample_id": [ "GSM209827", "GSM209828" ], "type": "individual", "id": "GDS2868_13" }, { "dataset_id": "GDS2868", "description": "5", "sample_id": [ "GSM209829", "GSM209830" ], "type": "individual", "id": "GDS2868_14" }, { "dataset_id": "GDS2868", "description": "6", "sample_id": [ "GSM209831", "GSM209832" ], "type": "individual", "id": "GDS2868_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2868", "version": 1.0, "instances": "22", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2868.tab", "compression": "gz" } ], [ [ "GDS287.tab" ], { "title": "Muscle function and aging - male (HG-U133A)", "description": "Comparison of gene expression in vastus lateralis skeletal muscle biopsies in healthy young (21-27 year old) and older (67-75 year old) men", "type": "Expression profiling by array", "pubmed_id": "12783983", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE362", "order": "ordered", "update_date": "Nov 02 2004", "subsets": [ { "dataset_id": "GDS287", "description": "21-27 years", "sample_id": [ "GSM5254", "GSM5255", "GSM5256", "GSM5257", "GSM5259", "GSM5260", "GSM5261" ], "type": "age", "id": "GDS287_1" }, { "dataset_id": "GDS287", "description": "67-75 years", "sample_id": [ "GSM5262", "GSM5263", "GSM5264", "GSM5265", "GSM5266", "GSM5268", "GSM5270", "GSM5271" ], "type": "age", "id": "GDS287_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS287", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS287.tab", "compression": "gz" } ], [ [ "GDS2872.tab" ], { "title": "Folate deficiency and arsenic effect on the skin", "description": "Analysis of skin from transgenic K6/ODC animals maintained on a folate deficient diet and exposed to 1 or 10 ppm sodium arsenate. K6/ODC mice develop skin tumors when exposed to sodium arsenite. Results provide insight into the combined effect of folate deficiency and arsenic on the skin.", "type": "Expression profiling by array", "pubmed_id": "17928125", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8733", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2872", "description": "control diet", "sample_id": [ "GSM216653", "GSM216654", "GSM216655", "GSM216656", "GSM216662", "GSM216663", "GSM216664", "GSM216665", "GSM216670", "GSM216671", "GSM216672", "GSM216673" ], "type": "protocol", "id": "GDS2872_1" }, { "dataset_id": "GDS2872", "description": "folate deficient diet", "sample_id": [ "GSM216658", "GSM216659", "GSM216660", "GSM216661", "GSM216666", "GSM216667", "GSM216668", "GSM216669", "GSM216674", "GSM216675", "GSM216676", "GSM216677" ], "type": "protocol", "id": "GDS2872_2" }, { "dataset_id": "GDS2872", "description": "untreated", "sample_id": [ "GSM216653", "GSM216654", "GSM216655", "GSM216656", "GSM216658", "GSM216659", "GSM216660", "GSM216661" ], "type": "agent", "id": "GDS2872_3" }, { "dataset_id": "GDS2872", "description": "sodium arsenate", "sample_id": [ "GSM216662", "GSM216663", "GSM216664", "GSM216665", "GSM216666", "GSM216667", "GSM216668", "GSM216669", "GSM216670", "GSM216671", "GSM216672", "GSM216673", "GSM216674", "GSM216675", "GSM216676", "GSM216677" ], "type": "agent", "id": "GDS2872_4" }, { "dataset_id": "GDS2872", "description": "0 ppm", "sample_id": [ "GSM216653", "GSM216654", "GSM216655", "GSM216656", "GSM216658", "GSM216659", "GSM216660", "GSM216661" ], "type": "dose", "id": "GDS2872_5" }, { "dataset_id": "GDS2872", "description": "1 ppm", "sample_id": [ "GSM216662", "GSM216663", "GSM216664", "GSM216665", "GSM216666", "GSM216667", "GSM216668", "GSM216669" ], "type": "dose", "id": "GDS2872_6" }, { "dataset_id": "GDS2872", "description": "10 ppm", "sample_id": [ "GSM216670", "GSM216671", "GSM216672", "GSM216673", "GSM216674", "GSM216675", "GSM216676", "GSM216677" ], "type": "dose", "id": "GDS2872_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2872", "version": 1.0, "instances": "24", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2872.tab", "compression": "gz" } ], [ [ "GDS2873.tab" ], { "title": "Wip1 mutant embryonic fibroblast response to gamma radiation", "description": "Analysis of Wip1 mutant embryonic fibroblasts following 4 hour after 5 Gy of gamma irradiation. Wip1 is a p53-induced phosphatase overexpressed in several human tumor types.", "type": "Expression profiling by array", "pubmed_id": "17936559", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8704", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2873", "description": "wip1-/-", "sample_id": [ "GSM215650", "GSM215652" ], "type": "genotype/variation", "id": "GDS2873_1" }, { "dataset_id": "GDS2873", "description": "Wip1+/+", "sample_id": [ "GSM215651", "GSM215654" ], "type": "genotype/variation", "id": "GDS2873_2" }, { "dataset_id": "GDS2873", "description": "control", "sample_id": [ "GSM215650", "GSM215651" ], "type": "stress", "id": "GDS2873_3" }, { "dataset_id": "GDS2873", "description": "gamma radiation", "sample_id": [ "GSM215652", "GSM215654" ], "type": "stress", "id": "GDS2873_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2873", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2873.tab", "compression": "gz" } ], [ [ "GDS2874.tab" ], { "title": "D-3-phosphoglycerate dehydrogenase deficiency effect on the embryonic head", "description": "Analysis of embryonic head tissue lacking D-3-phosphoglycerate dehydrogenase (Phgdh). Mutations in human PHGDH gene cause serine deficiency disorders like congenital microcephaly and psychomotor retardation. Results provide insight into the pathogenesis of SDD.", "type": "Expression profiling by array", "pubmed_id": "18228065", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE8555", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2874", "description": "wild type", "sample_id": [ "GSM212558", "GSM212560", "GSM212562", "GSM212564" ], "type": "genotype/variation", "id": "GDS2874_1" }, { "dataset_id": "GDS2874", "description": "PHGDH null", "sample_id": [ "GSM212559", "GSM212561", "GSM212563", "GSM212565" ], "type": "genotype/variation", "id": "GDS2874_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2874", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2874.tab", "compression": "gz" } ], [ [ "GDS2875.tab" ], { "title": "Nrf2-deficient type II lung epithelial cell response to antioxidant supplementation", "description": "Analysis of Nrf2 deficient lung epithelial cells treated with the antioxidant glutathione (GSH). GSH rescues cells from prooxidant-induced lung injury associated with Nrf2 deficiency. Results provide insight into the molecular mechanisms by which Nrf2 regulates cellular protection and proliferation.", "type": "Expression profiling by array", "pubmed_id": "17895394", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7810", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS2875", "description": "Nrf2+/+", "sample_id": [ "GSM189472", "GSM189473" ], "type": "genotype/variation", "id": "GDS2875_1" }, { "dataset_id": "GDS2875", "description": "Nrf2-/-", "sample_id": [ "GSM189476", "GSM189477", "GSM189478", "GSM189479" ], "type": "genotype/variation", "id": "GDS2875_2" }, { "dataset_id": "GDS2875", "description": "control", "sample_id": [ "GSM189472", "GSM189473", "GSM189476", "GSM189477" ], "type": "agent", "id": "GDS2875_3" }, { "dataset_id": "GDS2875", "description": "glutathione (GSH)", "sample_id": [ "GSM189478", "GSM189479" ], "type": "agent", "id": "GDS2875_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2875", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2875.tab", "compression": "gz" } ], [ [ "GDS2876.tab" ], { "title": "Vaccine adjuvant monophosphoryl lipid A effect on the spleen", "description": "Analysis of spleens of animals treated with the vaccine adjuvant monophosphoryl lipid A (MPLA). MPLA is a low-toxicity derivative of lipopolysaccharide with useful immunostimulatory properties. Results provide insight into the mechanism of action of MPLA.", "type": "Expression profiling by array", "pubmed_id": "17569868", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE7768", "order": "none", "update_date": "Aug 16 2007", "subsets": [ { "dataset_id": "GDS2876", "description": "control", "sample_id": [ "GSM188270", "GSM188271", "GSM188272" ], "type": "agent", "id": "GDS2876_1" }, { "dataset_id": "GDS2876", "description": "lipopolysaccharide", "sample_id": [ "GSM188273", "GSM188274", "GSM188275" ], "type": "agent", "id": "GDS2876_2" }, { "dataset_id": "GDS2876", "description": "monophosphoryl lipid A", "sample_id": [ "GSM188276", "GSM188277", "GSM188278" ], "type": "agent", "id": "GDS2876_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2876", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2876.tab", "compression": "gz" } ], [ [ "GDS2877.tab" ], { "title": "Chlamydia psittaci infection and host genetic background", "description": "Analysis of peritoneal lavage from inbred C57BL/6J and DBA/2J animals 3 days after intraperitoneal injection with Chlamydia psittaci. C57BL/6J are more resistant to C. psittaci infection than DBA/2J. Results provide insight into the genetic basis of this difference.", "type": "Expression profiling by array", "pubmed_id": "17641048", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE7767", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2877", "description": "DBA2J", "sample_id": [ "GSM188243", "GSM188244", "GSM188245" ], "type": "strain", "id": "GDS2877_1" }, { "dataset_id": "GDS2877", "description": "C57BL6J", "sample_id": [ "GSM188240", "GSM188241", "GSM188242" ], "type": "strain", "id": "GDS2877_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2877", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2877.tab", "compression": "gz" } ], [ [ "GDS2878.tab" ], { "title": "Inert particles effect on the lungs of pregnant females", "description": "Analysis of lungs from pregnant and non-pregnant BALB/c females following insufflation with inert titanium dioxide particles. Results provide insight into the mechanisms underlying the differences in response between pregnant and non-pregnant females to inhaled inert particles.", "type": "Expression profiling by array", "pubmed_id": "17656681", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE7475", "order": "none", "update_date": "Aug 16 2007", "subsets": [ { "dataset_id": "GDS2878", "description": "non-pregnant", "sample_id": [ "GSM180976", "GSM180978", "GSM180979", "GSM180980", "GSM180981", "GSM180985", "GSM180989" ], "type": "development stage", "id": "GDS2878_1" }, { "dataset_id": "GDS2878", "description": "pregnant", "sample_id": [ "GSM180975", "GSM180977", "GSM180982", "GSM180983", "GSM180984", "GSM180986", "GSM180987", "GSM180988", "GSM180990" ], "type": "development stage", "id": "GDS2878_2" }, { "dataset_id": "GDS2878", "description": "control", "sample_id": [ "GSM180975", "GSM180976", "GSM180977", "GSM180984", "GSM180985", "GSM180986", "GSM180989", "GSM180990" ], "type": "agent", "id": "GDS2878_3" }, { "dataset_id": "GDS2878", "description": "titanium dioxide", "sample_id": [ "GSM180978", "GSM180979", "GSM180980", "GSM180981", "GSM180982", "GSM180983", "GSM180987", "GSM180988" ], "type": "agent", "id": "GDS2878_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2878", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2878.tab", "compression": "gz" } ], [ [ "GDS2879.tab" ], { "title": "Enterohemorrhagic Escherichia coli response to epinephrine, norepinephrine, and indole", "description": "Analysis of enterohemmorhagic Escherichia coli (EHEC) O157:H7 treated with epinephrine (EP), norepinephrine (NE), and indole. During infection in the gastrointestinal tract, EHEC is exposed to a wide range of signaling molecules such as EP and NE, and bacterial signaling molecules such as indole.", "type": "Expression profiling by array", "pubmed_id": "17591798", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5552", "order": "none", "update_date": "Aug 20 2007", "subsets": [ { "dataset_id": "GDS2879", "description": "control", "sample_id": [ "GSM129073" ], "type": "agent", "id": "GDS2879_1" }, { "dataset_id": "GDS2879", "description": "epinephrine", "sample_id": [ "GSM129074" ], "type": "agent", "id": "GDS2879_2" }, { "dataset_id": "GDS2879", "description": "norepinephrine", "sample_id": [ "GSM129075" ], "type": "agent", "id": "GDS2879_3" }, { "dataset_id": "GDS2879", "description": "indole", "sample_id": [ "GSM129076" ], "type": "agent", "id": "GDS2879_4" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS2879", "version": 1.0, "instances": "4", "variables": 8805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2879.tab", "compression": "gz" } ], [ [ "GDS288.tab" ], { "title": "Muscle function and aging - male (HG-U133B)", "description": "Comparison of gene expression in vastus lateralis skeletal muscle biopsies in healthy young (21-27 year old) and older (67-75 year old) men.", "type": "Expression profiling by array", "pubmed_id": "12783983", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE362", "order": "ordered", "update_date": "Nov 02 2004", "subsets": [ { "dataset_id": "GDS288", "description": "21-27 years", "sample_id": [ "GSM5300", "GSM5301", "GSM5302", "GSM5303", "GSM5305", "GSM5306", "GSM5307" ], "type": "age", "id": "GDS288_1" }, { "dataset_id": "GDS288", "description": "67-75 years", "sample_id": [ "GSM5308", "GSM5309", "GSM5310", "GSM5311", "GSM5312", "GSM5313", "GSM5314", "GSM5315" ], "type": "age", "id": "GDS288_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS288", "version": 1.0, "instances": "15", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS288.tab", "compression": "gz" } ], [ [ "GDS2880.tab" ], { "title": "Clear cell renal cell carcinoma (HG-U133A)", "description": "Analysis of patient matched normal and stage 1 or stage 2 clear cell renal cell carcinoma (cRCC) tumors. Results provide insight into the molecular pathogenesis of cRCC.", "type": "Expression profiling by array", "pubmed_id": [ "17699851", "20502531" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE6344", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2880", "description": "normal", "sample_id": [ "GSM146778", "GSM146780", "GSM146782", "GSM146784", "GSM146786", "GSM146789", "GSM146790", "GSM146792", "GSM146794", "GSM146796" ], "type": "disease state", "id": "GDS2880_1" }, { "dataset_id": "GDS2880", "description": "stage I cRCC", "sample_id": [ "GSM146779", "GSM146781", "GSM146783", "GSM146785", "GSM146787" ], "type": "disease state", "id": "GDS2880_2" }, { "dataset_id": "GDS2880", "description": "stage II cRCC", "sample_id": [ "GSM146788", "GSM146791", "GSM146793", "GSM146795", "GSM146797" ], "type": "disease state", "id": "GDS2880_3" }, { "dataset_id": "GDS2880", "description": "patient 2", "sample_id": [ "GSM146778", "GSM146779" ], "type": "individual", "id": "GDS2880_4" }, { "dataset_id": "GDS2880", "description": "patient 3", "sample_id": [ "GSM146780", "GSM146781" ], "type": "individual", "id": "GDS2880_5" }, { "dataset_id": "GDS2880", "description": "patient 4", "sample_id": [ "GSM146782", "GSM146783" ], "type": "individual", "id": "GDS2880_6" }, { "dataset_id": "GDS2880", "description": "patient 5", "sample_id": [ "GSM146784", "GSM146785" ], "type": "individual", "id": "GDS2880_7" }, { "dataset_id": "GDS2880", "description": "patient 6", "sample_id": [ "GSM146786", "GSM146787" ], "type": "individual", "id": "GDS2880_8" }, { "dataset_id": "GDS2880", "description": "patient 8", "sample_id": [ "GSM146788", "GSM146789" ], "type": "individual", "id": "GDS2880_9" }, { "dataset_id": "GDS2880", "description": "patient 9", "sample_id": [ "GSM146790", "GSM146791" ], "type": "individual", "id": "GDS2880_10" }, { "dataset_id": "GDS2880", "description": "patient 10", "sample_id": [ "GSM146792", "GSM146793" ], "type": "individual", "id": "GDS2880_11" }, { "dataset_id": "GDS2880", "description": "patient 11", "sample_id": [ "GSM146794", "GSM146795" ], "type": "individual", "id": "GDS2880_12" }, { "dataset_id": "GDS2880", "description": "patient 12", "sample_id": [ "GSM146796", "GSM146797" ], "type": "individual", "id": "GDS2880_13" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2880", "version": 1.0, "instances": "20", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2880.tab", "compression": "gz" } ], [ [ "GDS2881.tab" ], { "title": "Clear cell renal cell carcinoma (HB-U133B)", "description": "Analysis of patient matched normal and stage 1 or stage 2 clear cell renal cell carcinoma (cRCC) tumors. Results provide insight into the molecular pathogenesis of cRCC.", "type": "Expression profiling by array", "pubmed_id": [ "17699851", "20502531" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE6344", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2881", "description": "normal", "sample_id": [ "GSM146798", "GSM146800", "GSM146802", "GSM146804", "GSM146806", "GSM146809", "GSM146810", "GSM146812", "GSM146814", "GSM146816" ], "type": "disease state", "id": "GDS2881_1" }, { "dataset_id": "GDS2881", "description": "stage I cRCC", "sample_id": [ "GSM146799", "GSM146801", "GSM146803", "GSM146805", "GSM146807" ], "type": "disease state", "id": "GDS2881_2" }, { "dataset_id": "GDS2881", "description": "stage II cRCC", "sample_id": [ "GSM146808", "GSM146811", "GSM146813", "GSM146815", "GSM146817" ], "type": "disease state", "id": "GDS2881_3" }, { "dataset_id": "GDS2881", "description": "patient 2", "sample_id": [ "GSM146798", "GSM146799" ], "type": "individual", "id": "GDS2881_4" }, { "dataset_id": "GDS2881", "description": "patient 3", "sample_id": [ "GSM146800", "GSM146801" ], "type": "individual", "id": "GDS2881_5" }, { "dataset_id": "GDS2881", "description": "patient 4", "sample_id": [ "GSM146802", "GSM146803" ], "type": "individual", "id": "GDS2881_6" }, { "dataset_id": "GDS2881", "description": "patient 5", "sample_id": [ "GSM146804", "GSM146805" ], "type": "individual", "id": "GDS2881_7" }, { "dataset_id": "GDS2881", "description": "patient 6", "sample_id": [ "GSM146806", "GSM146807" ], "type": "individual", "id": "GDS2881_8" }, { "dataset_id": "GDS2881", "description": "patient 8", "sample_id": [ "GSM146808", "GSM146809" ], "type": "individual", "id": "GDS2881_9" }, { "dataset_id": "GDS2881", "description": "patient 9", "sample_id": [ "GSM146810", "GSM146811" ], "type": "individual", "id": "GDS2881_10" }, { "dataset_id": "GDS2881", "description": "patient 10", "sample_id": [ "GSM146812", "GSM146813" ], "type": "individual", "id": "GDS2881_11" }, { "dataset_id": "GDS2881", "description": "patient 11", "sample_id": [ "GSM146814", "GSM146815" ], "type": "individual", "id": "GDS2881_12" }, { "dataset_id": "GDS2881", "description": "patient 12", "sample_id": [ "GSM146816", "GSM146817" ], "type": "individual", "id": "GDS2881_13" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS2881", "version": 1.0, "instances": "20", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2881.tab", "compression": "gz" } ], [ [ "GDS2882.tab" ], { "title": "Cerebral cortex and hypothalamus response to sleep and sleep deprivation: time course", "description": "Analysis of cerebral cortices (CCs) and hypothalami (HYs) of animals after various durations of sleep and sleep deprivation. The CC is a neuronal target for processes that control sleep; the HY is an important site of sleep regulatory processes. Results provide insight into the function of sleep.", "type": "Expression profiling by array", "pubmed_id": "17698924", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "90", "value_type": "count", "reference_series": "GSE6514", "order": "none", "update_date": "Aug 20 2007", "subsets": [ { "dataset_id": "GDS2882", "description": "cerebral cortex", "sample_id": [ "GSM149511", "GSM149512", "GSM149513", "GSM149514", "GSM149515", "GSM149516", "GSM149517", "GSM149518", "GSM149519", "GSM149520", "GSM149521", "GSM149522", "GSM149523", "GSM149524", "GSM149525", "GSM149540", "GSM149541", "GSM149542", "GSM149543", "GSM149544", "GSM149545", "GSM149546", "GSM149547", "GSM149548", "GSM149549", "GSM149550", "GSM149551", "GSM149552", "GSM149553", "GSM149554", "GSM149555", "GSM149556", "GSM149557", "GSM149558", "GSM149559", "GSM149560", "GSM149561", "GSM149562", "GSM149563", "GSM149564", "GSM149565", "GSM149566", "GSM149567", "GSM149568", "GSM149575" ], "type": "tissue", "id": "GDS2882_1" }, { "dataset_id": "GDS2882", "description": "hypothalamus", "sample_id": [ "GSM149576", "GSM149577", "GSM149578", "GSM149599", "GSM149600", "GSM149601", "GSM149602", "GSM149603", "GSM149604", "GSM149605", "GSM149606", "GSM149607", "GSM149608", "GSM149609", "GSM149610", "GSM149611", "GSM149612", "GSM149613", "GSM149614", "GSM149615", "GSM149616", "GSM149617", "GSM149618", "GSM149619", "GSM149620", "GSM149621", "GSM149622", "GSM149623", "GSM149624", "GSM149625", "GSM149626", "GSM149627", "GSM149628", "GSM149629", "GSM149630", "GSM149631", "GSM149632", "GSM149633", "GSM149634", "GSM149635", "GSM149636", "GSM149637", "GSM149648", "GSM149649", "GSM149650" ], "type": "tissue", "id": "GDS2882_2" }, { "dataset_id": "GDS2882", "description": "control", "sample_id": [ "GSM149511", "GSM149512", "GSM149513", "GSM149514", "GSM149515", "GSM149576", "GSM149577", "GSM149578", "GSM149599", "GSM149600" ], "type": "protocol", "id": "GDS2882_3" }, { "dataset_id": "GDS2882", "description": "sleep", "sample_id": [ "GSM149516", "GSM149517", "GSM149518", "GSM149519", "GSM149520", "GSM149540", "GSM149541", "GSM149542", "GSM149543", "GSM149544", "GSM149550", "GSM149551", "GSM149552", "GSM149553", "GSM149554", "GSM149560", "GSM149561", "GSM149562", "GSM149563", "GSM149564", "GSM149601", "GSM149602", "GSM149603", "GSM149604", "GSM149605", "GSM149611", "GSM149612", "GSM149613", "GSM149614", "GSM149615", "GSM149621", "GSM149622", "GSM149623", "GSM149624", "GSM149625", "GSM149631", "GSM149632", "GSM149633", "GSM149634", "GSM149635" ], "type": "protocol", "id": "GDS2882_4" }, { "dataset_id": "GDS2882", "description": "sleep deprivation", "sample_id": [ "GSM149521", "GSM149522", "GSM149523", "GSM149524", "GSM149525", "GSM149545", "GSM149546", "GSM149547", "GSM149548", "GSM149549", "GSM149555", "GSM149556", "GSM149557", "GSM149558", "GSM149559", "GSM149565", "GSM149566", "GSM149567", "GSM149568", "GSM149575", "GSM149606", "GSM149607", "GSM149608", "GSM149609", "GSM149610", "GSM149616", "GSM149617", "GSM149618", "GSM149619", "GSM149620", "GSM149626", "GSM149627", "GSM149628", "GSM149629", "GSM149630", "GSM149636", "GSM149637", "GSM149648", "GSM149649", "GSM149650" ], "type": "protocol", "id": "GDS2882_5" }, { "dataset_id": "GDS2882", "description": "0 h", "sample_id": [ "GSM149511", "GSM149512", "GSM149513", "GSM149514", "GSM149515", "GSM149576", "GSM149577", "GSM149578", "GSM149599", "GSM149600" ], "type": "time", "id": "GDS2882_6" }, { "dataset_id": "GDS2882", "description": "3 h", "sample_id": [ "GSM149516", "GSM149517", "GSM149518", "GSM149519", "GSM149520", "GSM149521", "GSM149522", "GSM149523", "GSM149524", "GSM149525", "GSM149601", "GSM149602", "GSM149603", "GSM149604", "GSM149605", "GSM149606", "GSM149607", "GSM149608", "GSM149609", "GSM149610" ], "type": "time", "id": "GDS2882_7" }, { "dataset_id": "GDS2882", "description": "6 h", "sample_id": [ "GSM149540", "GSM149541", "GSM149542", "GSM149543", "GSM149544", "GSM149545", "GSM149546", "GSM149547", "GSM149548", "GSM149549", "GSM149611", "GSM149612", "GSM149613", "GSM149614", "GSM149615", "GSM149616", "GSM149617", "GSM149618", "GSM149619", "GSM149620" ], "type": "time", "id": "GDS2882_8" }, { "dataset_id": "GDS2882", "description": "9 h", "sample_id": [ "GSM149550", "GSM149551", "GSM149552", "GSM149553", "GSM149554", "GSM149555", "GSM149556", "GSM149557", "GSM149558", "GSM149559", "GSM149621", "GSM149622", "GSM149623", "GSM149624", "GSM149625", "GSM149626", "GSM149627", "GSM149628", "GSM149629", "GSM149630" ], "type": "time", "id": "GDS2882_9" }, { "dataset_id": "GDS2882", "description": "12 h", "sample_id": [ "GSM149560", "GSM149561", "GSM149562", "GSM149563", "GSM149564", "GSM149565", "GSM149566", "GSM149567", "GSM149568", "GSM149575", "GSM149631", "GSM149632", "GSM149633", "GSM149634", "GSM149635", "GSM149636", "GSM149637", "GSM149648", "GSM149649", "GSM149650" ], "type": "time", "id": "GDS2882_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2882", "version": 1.0, "instances": "90", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2882.tab", "compression": "gz" } ], [ [ "GDS2883.tab" ], { "title": "LEDGF/p75 transcription factor deficiency effect on T-cell line", "description": "Analysis of Jurkat T-cells depleted for the LEDGF/p75 transcription factor. LEDGF/p75 is involved in targeting HIV DNA integration. Results provide insight into the mechanisms controlling HIV integration.", "type": "Expression profiling by array", "pubmed_id": "17545577", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7508", "order": "none", "update_date": "Aug 20 2007", "subsets": [ { "dataset_id": "GDS2883", "description": "control", "sample_id": [ "GSM181864", "GSM181865", "GSM181866" ], "type": "cell line", "id": "GDS2883_1" }, { "dataset_id": "GDS2883", "description": "LEDGF depletion", "sample_id": [ "GSM181975", "GSM181977", "GSM181979" ], "type": "cell line", "id": "GDS2883_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2883", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2883.tab", "compression": "gz" } ], [ [ "GDS2884.tab" ], { "title": "X-linked Emery-Dreifuss muscular dystrophy model and cardiomyopathy", "description": "Analysis of hearts of mutants lacking EMD, a gene encoding an A-type lamin. Mutations in EMD cause X-linked Emery-Dreifuss muscular dystrophy (EDMD). Results provide insight into the molecular mechanisms involved in the development of cardiomyopathy in X-linked EDMD.", "type": "Expression profiling by array", "pubmed_id": "17567779", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE6399", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2884", "description": "wild type", "sample_id": [ "GSM147451", "GSM147452", "GSM147459", "GSM147460", "GSM147461", "GSM147462", "GSM147463", "GSM147465" ], "type": "genotype/variation", "id": "GDS2884_1" }, { "dataset_id": "GDS2884", "description": "EMD null", "sample_id": [ "GSM147466", "GSM147467", "GSM147468", "GSM147469", "GSM147481", "GSM147493" ], "type": "genotype/variation", "id": "GDS2884_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2884", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2884.tab", "compression": "gz" } ], [ [ "GDS2885.tab" ], { "title": "Fibroblast-like synoviocytes response to p38 MAPK inhibition and TGFalpha in vitro", "description": "Analysis of fibroblast-like synoviocytes (FLS) treated with TGFalpha alone or in combination with SB203580, an inhibitor of p38. FLS, targets of proinflammatory cytokines, are involved in rheumatoid arthritis (RA). Results provide insight into the role of the p38 pathway in RA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17652167", "platform": "GPL2877", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE7826", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2885", "description": "control 1", "sample_id": [ "GSM189807", "GSM189809", "GSM189811", "GSM189813" ], "type": "agent", "id": "GDS2885_1" }, { "dataset_id": "GDS2885", "description": "TNFalpha", "sample_id": [ "GSM189806", "GSM189808", "GSM189810", "GSM189812" ], "type": "agent", "id": "GDS2885_2" }, { "dataset_id": "GDS2885", "description": "control 2", "sample_id": [ "GSM189815", "GSM189817", "GSM189819" ], "type": "agent", "id": "GDS2885_3" }, { "dataset_id": "GDS2885", "description": "SB203580 and TNFalpha", "sample_id": [ "GSM189814", "GSM189816", "GSM189818" ], "type": "agent", "id": "GDS2885_4" }, { "dataset_id": "GDS2885", "description": "TNFalpha stimulation", "sample_id": [ "GSM189807", "GSM189809", "GSM189811", "GSM189806", "GSM189808", "GSM189810", "GSM189812", "GSM189813" ], "type": "protocol", "id": "GDS2885_5" }, { "dataset_id": "GDS2885", "description": "SB203580 preincubation", "sample_id": [ "GSM189815", "GSM189817", "GSM189819", "GSM189814", "GSM189816", "GSM189818" ], "type": "protocol", "id": "GDS2885_6" } ], "taxid": "10116", "genes": 32403, "aggregation_function": "mean", "name": "GDS2885", "version": 1.0, "instances": "14", "variables": 32406, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2885.tab", "compression": "gz" } ], [ [ "GDS2886.tab" ], { "title": "PPARalpha activation effect on the small intestine", "description": "Analysis of small intestine of wild type and peroxisome proliferator-activated receptor alpha (PPARalpha) null animals after treatment with WY14643, an agonist of PPARalpha. PPARalpha is a fatty acid-activated transcription factor. Results provide insight into role of PPARalpha in small intestine.", "type": "Expression profiling by array", "pubmed_id": "17426115", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5475", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2886", "description": "wild type", "sample_id": [ "GSM124308", "GSM124309", "GSM124310", "GSM124311", "GSM124312", "GSM124313" ], "type": "genotype/variation", "id": "GDS2886_1" }, { "dataset_id": "GDS2886", "description": "PPARalpha null", "sample_id": [ "GSM124314", "GSM124315", "GSM124316", "GSM124317", "GSM124318", "GSM124320" ], "type": "genotype/variation", "id": "GDS2886_2" }, { "dataset_id": "GDS2886", "description": "untreated", "sample_id": [ "GSM124308", "GSM124309", "GSM124310", "GSM124314", "GSM124315", "GSM124316" ], "type": "agent", "id": "GDS2886_3" }, { "dataset_id": "GDS2886", "description": "PPARalpha agonist", "sample_id": [ "GSM124311", "GSM124312", "GSM124313", "GSM124317", "GSM124318", "GSM124320" ], "type": "agent", "id": "GDS2886_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2886", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2886.tab", "compression": "gz" } ], [ [ "GDS2887.tab" ], { "title": "Moderate stage Huntington's disease lymphocytes", "description": "Analysis of lymphocytes from patients with moderate stage Huntington's disease (HD). Results provide insight into the feasibility of using gene expression to identify biomarkers for moderate stage HD.", "type": "Expression profiling by array", "pubmed_id": "17724341", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE8762", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2887", "description": "control", "sample_id": [ "GSM217773", "GSM217766", "GSM217771", "GSM217770", "GSM217767", "GSM217775", "GSM217772", "GSM217768", "GSM217774", "GSM217769" ], "type": "disease state", "id": "GDS2887_1" }, { "dataset_id": "GDS2887", "description": "moderate HD", "sample_id": [ "GSM217777", "GSM217783", "GSM217786", "GSM217780", "GSM217781", "GSM217778", "GSM217785", "GSM217776", "GSM217784", "GSM217779", "GSM217782", "GSM217787" ], "type": "disease state", "id": "GDS2887_2" }, { "dataset_id": "GDS2887", "description": "male", "sample_id": [ "GSM217773", "GSM217771", "GSM217786", "GSM217775", "GSM217772", "GSM217785", "GSM217784", "GSM217774", "GSM217787" ], "type": "gender", "id": "GDS2887_3" }, { "dataset_id": "GDS2887", "description": "female", "sample_id": [ "GSM217777", "GSM217766", "GSM217783", "GSM217770", "GSM217767", "GSM217768", "GSM217780", "GSM217781", "GSM217778", "GSM217776", "GSM217779", "GSM217782", "GSM217769" ], "type": "gender", "id": "GDS2887_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2887", "version": 1.0, "instances": "22", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2887.tab", "compression": "gz" } ], [ [ "GDS2889.tab" ], { "title": "Air pollutant and oxidized lipid effect on microvascular endothelial cells: dose response", "description": "Analysis of microvascular endothelial cells treated at various concentrations of the model air pollutant diesel exhaust particles (DEP), an oxidized phospholipid (ox-PAPC), or both. Results provide insight into the synergistic effect of DEP and ox-PAPC in promoting vascular inflammation.", "type": "Expression profiling by array", "pubmed_id": "17655762", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE6584", "order": "none", "update_date": "Aug 21 2007", "subsets": [ { "dataset_id": "GDS2889", "description": "untreated", "sample_id": [ "GSM152146", "GSM152147", "GSM152148" ], "type": "agent", "id": "GDS2889_1" }, { "dataset_id": "GDS2889", "description": "air pollutant", "sample_id": [ "GSM152158", "GSM152159", "GSM152160", "GSM152161", "GSM152162", "GSM152163" ], "type": "agent", "id": "GDS2889_2" }, { "dataset_id": "GDS2889", "description": "oxidized lipid", "sample_id": [ "GSM152164", "GSM152165", "GSM152166", "GSM152167", "GSM152168", "GSM152169", "GSM152170", "GSM152171", "GSM152172" ], "type": "agent", "id": "GDS2889_3" }, { "dataset_id": "GDS2889", "description": "air pollutant and oxidized lipid", "sample_id": [ "GSM152149", "GSM152150", "GSM152151", "GSM152152", "GSM152153", "GSM152154", "GSM152155", "GSM152156", "GSM152157" ], "type": "agent", "id": "GDS2889_4" }, { "dataset_id": "GDS2889", "description": "control", "sample_id": [ "GSM152146", "GSM152147", "GSM152148" ], "type": "dose", "id": "GDS2889_5" }, { "dataset_id": "GDS2889", "description": "5 mcg/ml DEP", "sample_id": [ "GSM152161", "GSM152162", "GSM152163" ], "type": "dose", "id": "GDS2889_6" }, { "dataset_id": "GDS2889", "description": "25 mcg/ml DEP", "sample_id": [ "GSM152158", "GSM152159", "GSM152160" ], "type": "dose", "id": "GDS2889_7" }, { "dataset_id": "GDS2889", "description": "10 mcg/ml ox-PAPC", "sample_id": [ "GSM152164", "GSM152165", "GSM152166" ], "type": "dose", "id": "GDS2889_8" }, { "dataset_id": "GDS2889", "description": "20 mcg/ml ox-PAPC", "sample_id": [ "GSM152167", "GSM152168", "GSM152169" ], "type": "dose", "id": "GDS2889_9" }, { "dataset_id": "GDS2889", "description": "40 mcg/ml ox-PAPC", "sample_id": [ "GSM152170", "GSM152171", "GSM152172" ], "type": "dose", "id": "GDS2889_10" }, { "dataset_id": "GDS2889", "description": "5 mcg/ml DEP, 10 mcg/ml ox-PAPC", "sample_id": [ "GSM152149", "GSM152152", "GSM152153" ], "type": "dose", "id": "GDS2889_11" }, { "dataset_id": "GDS2889", "description": "5 mcg/ml DEP, 20 mcg/ml ox-PAPC", "sample_id": [ "GSM152150", "GSM152151", "GSM152154" ], "type": "dose", "id": "GDS2889_12" }, { "dataset_id": "GDS2889", "description": "5 mcg/ml DEP, 40 mcg/ml ox-PAPC", "sample_id": [ "GSM152155", "GSM152156", "GSM152157" ], "type": "dose", "id": "GDS2889_13" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS2889", "version": 1.0, "instances": "27", "variables": 22009, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2889.tab", "compression": "gz" } ], [ [ "GDS289.tab" ], { "title": "Chronic obstructive pulmonary disease", "description": "Study of the signaling mechanisms responsible for diaphragm muscle transformation from fast-to-slow fiber type in chronic obstructive pulmonary disease (COPD) patients.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE475", "order": "none", "update_date": "Nov 15 2005", "subsets": [ { "dataset_id": "GDS289", "description": "control", "sample_id": [ "GSM4004", "GSM4005", "GSM4006", "GSM48597" ], "type": "disease state", "id": "GDS289_1" }, { "dataset_id": "GDS289", "description": "chronic obstructive pulmonary disease", "sample_id": [ "GSM4003", "GSM29324", "GSM29345" ], "type": "disease state", "id": "GDS289_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS289", "version": 1.0, "instances": "7", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS289.tab", "compression": "gz" } ], [ [ "GDS2892.tab" ], { "title": "Optineurin depletion", "description": "Analysis of HeLa cells depleted for optineurin using RNAi knockdown. Mutations in the gene for optineurin are associated with open-angle glaucoma. Results provide insight into the function of optineurin and its role in the pathogenesis of open-angle glaucoma.", "type": "Expression profiling by array", "pubmed_id": "17663987", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE6819", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2892", "description": "control", "sample_id": [ "GSM157215", "GSM157216", "GSM157217" ], "type": "protocol", "id": "GDS2892_1" }, { "dataset_id": "GDS2892", "description": "optineurin depletion", "sample_id": [ "GSM157218", "GSM157219", "GSM157220" ], "type": "protocol", "id": "GDS2892_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2892", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2892.tab", "compression": "gz" } ], [ [ "GDS2895.tab" ], { "title": "Stem development", "description": "Analysis of sections from 5 and 10 cm long ecotype Ler bolting stems. Different stages of vascular and interfascicular fiber differentiation can be identified along the axis of bolting stems. Results provide insight into the molecular mechanisms controlling this pattern of development.", "type": "Expression profiling by array", "pubmed_id": "15918878", "platform": "GPL1713", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted oligonucleotide", "feature_count": "28800", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE2000", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2895", "description": "5 cm stem", "sample_id": [ "GSM35570", "GSM35571", "GSM35721", "GSM35725" ], "type": "development stage", "id": "GDS2895_1" }, { "dataset_id": "GDS2895", "description": "10 cm stem", "sample_id": [ "GSM35565", "GSM35567", "GSM35568", "GSM35569", "GSM35727", "GSM35728", "GSM35729", "GSM35978", "GSM36004", "GSM36011", "GSM36012", "GSM36013", "GSM36014", "GSM36015", "GSM35726", "GSM36016" ], "type": "development stage", "id": "GDS2895_2" }, { "dataset_id": "GDS2895", "description": "0 - 3 cm section", "sample_id": [ "GSM35565", "GSM35567", "GSM35568", "GSM35569" ], "type": "other", "id": "GDS2895_3" }, { "dataset_id": "GDS2895", "description": "2 - 4 cm section", "sample_id": [ "GSM35570", "GSM35571", "GSM35721", "GSM35725" ], "type": "other", "id": "GDS2895_4" }, { "dataset_id": "GDS2895", "description": "3 - 5 cm section", "sample_id": [ "GSM35726", "GSM35727", "GSM35728", "GSM35729" ], "type": "other", "id": "GDS2895_5" }, { "dataset_id": "GDS2895", "description": "5 - 7 cm section", "sample_id": [ "GSM35978", "GSM36004", "GSM36011", "GSM36012" ], "type": "other", "id": "GDS2895_6" }, { "dataset_id": "GDS2895", "description": "7 - 9 cm section", "sample_id": [ "GSM36013", "GSM36014", "GSM36015", "GSM36016" ], "type": "other", "id": "GDS2895_7" } ], "taxid": "3702", "genes": 25160, "aggregation_function": "mean", "name": "GDS2895", "version": 1.0, "instances": "20", "variables": 25163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2895.tab", "compression": "gz" } ], [ [ "GDS2901.tab" ], { "title": "Tsc2 tumor suppressor gene mutant kidney response to genotoxic and non-genotoxic carcinogens: time course", "description": "Analysis of kidneys of Eker males treated for up to 14 days with the genotoxic carcinogen aristolochic acid (AA) or the non-genotoxic carcinogen ochratoxin A (OTA). The Eker rat, heterozygous mutant for the tuberous sclerosis 2 (Tsc2) tumor suppressor gene, is a model to study renal carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "17483316", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "84", "value_type": "count", "reference_series": "GSE5923", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2901", "description": "Eker", "sample_id": [ "GSM137556", "GSM137557", "GSM137558", "GSM137559", "GSM137560", "GSM137561", "GSM137562", "GSM137563", "GSM137564", "GSM137565", "GSM137566", "GSM137567", "GSM137568", "GSM137569", "GSM137570", "GSM137571", "GSM137572", "GSM137573", "GSM137574", "GSM137575", "GSM137576", "GSM137577", "GSM137578", "GSM137579", "GSM137580", "GSM137581", "GSM137582", "GSM137583", "GSM137584", "GSM137585", "GSM137586", "GSM137587", "GSM137588", "GSM137589", "GSM137590", "GSM137591", "GSM137592", "GSM137593", "GSM137594", "GSM137595", "GSM137596", "GSM137597", "GSM137598", "GSM137599", "GSM137600", "GSM137601", "GSM137602", "GSM137603" ], "type": "genotype/variation", "id": "GDS2901_1" }, { "dataset_id": "GDS2901", "description": "WT", "sample_id": [ "GSM137604", "GSM137605", "GSM137606", "GSM137607", "GSM137608", "GSM137609", "GSM137610", "GSM137611", "GSM137612", "GSM137613", "GSM137614", "GSM137615", "GSM137616", "GSM137617", "GSM137618", "GSM137619", "GSM137620", "GSM137621", "GSM137622", "GSM137623", "GSM137624", "GSM137625", "GSM137626", "GSM137627", "GSM137628", "GSM137629", "GSM137630", "GSM137631", "GSM137632", "GSM137633", "GSM137634", "GSM137635", "GSM137636", "GSM137637", "GSM137638", "GSM137639" ], "type": "genotype/variation", "id": "GDS2901_2" }, { "dataset_id": "GDS2901", "description": "AA", "sample_id": [ "GSM137604", "GSM137605", "GSM137606", "GSM137607", "GSM137608", "GSM137609", "GSM137610", "GSM137611", "GSM137612", "GSM137613", "GSM137614", "GSM137615", "GSM137556", "GSM137557", "GSM137558", "GSM137559", "GSM137560", "GSM137561", "GSM137562", "GSM137563", "GSM137564", "GSM137565", "GSM137566", "GSM137567" ], "type": "agent", "id": "GDS2901_3" }, { "dataset_id": "GDS2901", "description": "control for AA", "sample_id": [ "GSM137568", "GSM137569", "GSM137570", "GSM137571", "GSM137572", "GSM137573", "GSM137574", "GSM137575", "GSM137576", "GSM137577", "GSM137578", "GSM137579" ], "type": "agent", "id": "GDS2901_4" }, { "dataset_id": "GDS2901", "description": "OTA", "sample_id": [ "GSM137616", "GSM137617", "GSM137618", "GSM137619", "GSM137620", "GSM137621", "GSM137622", "GSM137623", "GSM137624", "GSM137625", "GSM137626", "GSM137627", "GSM137580", "GSM137581", "GSM137582", "GSM137583", "GSM137584", "GSM137585", "GSM137586", "GSM137587", "GSM137588", "GSM137589", "GSM137590", "GSM137591" ], "type": "agent", "id": "GDS2901_5" }, { "dataset_id": "GDS2901", "description": "control for OTA", "sample_id": [ "GSM137592", "GSM137593", "GSM137594", "GSM137595", "GSM137596", "GSM137597", "GSM137598", "GSM137599", "GSM137600", "GSM137601", "GSM137602", "GSM137603" ], "type": "agent", "id": "GDS2901_6" }, { "dataset_id": "GDS2901", "description": "control", "sample_id": [ "GSM137628", "GSM137629", "GSM137630", "GSM137631", "GSM137632", "GSM137633", "GSM137634", "GSM137635", "GSM137636", "GSM137637", "GSM137638", "GSM137639" ], "type": "agent", "id": "GDS2901_7" }, { "dataset_id": "GDS2901", "description": "1 d", "sample_id": [ "GSM137556", "GSM137557", "GSM137558", "GSM137568", "GSM137569", "GSM137570", "GSM137580", "GSM137581", "GSM137582", "GSM137592", "GSM137593", "GSM137594", "GSM137604", "GSM137605", "GSM137606", "GSM137616", "GSM137617", "GSM137618", "GSM137628", "GSM137629", "GSM137630" ], "type": "time", "id": "GDS2901_8" }, { "dataset_id": "GDS2901", "description": "3 d", "sample_id": [ "GSM137559", "GSM137560", "GSM137561", "GSM137571", "GSM137572", "GSM137573", "GSM137583", "GSM137584", "GSM137585", "GSM137595", "GSM137596", "GSM137597", "GSM137607", "GSM137608", "GSM137609", "GSM137619", "GSM137620", "GSM137621", "GSM137631", "GSM137632", "GSM137633" ], "type": "time", "id": "GDS2901_9" }, { "dataset_id": "GDS2901", "description": "7 d", "sample_id": [ "GSM137562", "GSM137563", "GSM137564", "GSM137574", "GSM137575", "GSM137576", "GSM137586", "GSM137587", "GSM137588", "GSM137598", "GSM137599", "GSM137600", "GSM137610", "GSM137611", "GSM137612", "GSM137622", "GSM137623", "GSM137624", "GSM137634", "GSM137635", "GSM137636" ], "type": "time", "id": "GDS2901_10" }, { "dataset_id": "GDS2901", "description": "14 d", "sample_id": [ "GSM137565", "GSM137566", "GSM137567", "GSM137577", "GSM137578", "GSM137579", "GSM137589", "GSM137590", "GSM137591", "GSM137601", "GSM137602", "GSM137603", "GSM137613", "GSM137614", "GSM137615", "GSM137625", "GSM137626", "GSM137627", "GSM137637", "GSM137638", "GSM137639" ], "type": "time", "id": "GDS2901_11" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS2901", "version": 1.0, "instances": "84", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2901.tab", "compression": "gz" } ], [ [ "GDS2902.tab" ], { "title": "Hypoxia and lymphathic endothelial cells", "description": "Analysis of lymphatic endothelial cells (LECs) subjected to hypoxia or treated with conditioned media from lung carcinoma cells grown under hypoxic conditions. LECs contribute to tumor metastasis.", "type": "Expression profiling by array", "pubmed_id": "17442415", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE5579", "order": "none", "update_date": "Jun 24 2008", "subsets": [ { "dataset_id": "GDS2902", "description": "normoxia", "sample_id": [ "GSM130277" ], "type": "protocol", "id": "GDS2902_1" }, { "dataset_id": "GDS2902", "description": "hypoxia", "sample_id": [ "GSM130278" ], "type": "protocol", "id": "GDS2902_2" }, { "dataset_id": "GDS2902", "description": "normoxic conditioned medium", "sample_id": [ "GSM130280" ], "type": "protocol", "id": "GDS2902_3" }, { "dataset_id": "GDS2902", "description": "hypoxic conditioned medium", "sample_id": [ "GSM130281" ], "type": "protocol", "id": "GDS2902_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2902", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2902.tab", "compression": "gz" } ], [ [ "GDS2903.tab" ], { "title": "Immune-resistant cancer cell line", "description": "Analysis of a highly immune-resistant cancer cell line. The resistant cell line is produced by subjecting a susceptible cell line to multiple rounds of in vivo immune selection. Results provide insight into the molecular mechanisms underlying tumor immune evasion.", "type": "Expression profiling by array", "pubmed_id": "17308126", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE2774", "order": "none", "update_date": "Aug 23 2007", "subsets": [ { "dataset_id": "GDS2903", "description": "immune-susceptible", "sample_id": [ "GSM60397", "GSM60398", "GSM60400", "GSM60401" ], "type": "cell line", "id": "GDS2903_1" }, { "dataset_id": "GDS2903", "description": "immune-resistant", "sample_id": [ "GSM60417", "GSM60418", "GSM60420", "GSM60421" ], "type": "cell line", "id": "GDS2903_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2903", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2903.tab", "compression": "gz" } ], [ [ "GDS2904.tab" ], { "title": "Hematopoietic stem cell response to uridine triphosphate: time course", "description": "Analysis of CD34+ hematopoietic stem cells treated for up to 24 hours with uridine triphosphate.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3005", "order": "none", "update_date": "Aug 23 2007", "subsets": [ { "dataset_id": "GDS2904", "description": "control", "sample_id": [ "GSM65673", "GSM65718", "GSM65723" ], "type": "agent", "id": "GDS2904_1" }, { "dataset_id": "GDS2904", "description": "UTP", "sample_id": [ "GSM65726", "GSM65728", "GSM65732" ], "type": "agent", "id": "GDS2904_2" }, { "dataset_id": "GDS2904", "description": "1 h", "sample_id": [ "GSM65673", "GSM65726" ], "type": "time", "id": "GDS2904_3" }, { "dataset_id": "GDS2904", "description": "6 h", "sample_id": [ "GSM65718", "GSM65728" ], "type": "time", "id": "GDS2904_4" }, { "dataset_id": "GDS2904", "description": "24 h", "sample_id": [ "GSM65723", "GSM65732" ], "type": "time", "id": "GDS2904_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2904", "version": 1.0, "instances": "6", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2904.tab", "compression": "gz" } ], [ [ "GDS2905.tab" ], { "title": "Embryonic stem cells and embryoid bodies (MG-430A)", "description": "Comparison of J1 embyronic stem cells and J1 embryoid bodies. Results provide insight into the molecular mechanisms responsible for maintaining the embryonic stem cell phenotype.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3223", "order": "ordered", "update_date": "Aug 23 2007", "subsets": [ { "dataset_id": "GDS2905", "description": "embryonic stem cell", "sample_id": [ "GSM72622", "GSM72624", "GSM72626" ], "type": "development stage", "id": "GDS2905_1" }, { "dataset_id": "GDS2905", "description": "embryoid body", "sample_id": [ "GSM72616", "GSM72618", "GSM72621" ], "type": "development stage", "id": "GDS2905_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2905", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2905.tab", "compression": "gz" } ], [ [ "GDS2906.tab" ], { "title": "Embryonic stem cells and embryoid bodies (MG-430B)", "description": "Comparison of J1 embyronic stem cells and J1 embryoid bodies. Results provide insight into the molecular mechanisms responsible for maintaining the embryonic stem cell phenotype.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE3223", "order": "ordered", "update_date": "Aug 23 2007", "subsets": [ { "dataset_id": "GDS2906", "description": "embryonic stem cell", "sample_id": [ "GSM72623", "GSM72625", "GSM72627" ], "type": "development stage", "id": "GDS2906_1" }, { "dataset_id": "GDS2906", "description": "embryoid body", "sample_id": [ "GSM72617", "GSM72619", "GSM72620" ], "type": "development stage", "id": "GDS2906_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS2906", "version": 1.0, "instances": "6", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2906.tab", "compression": "gz" } ], [ [ "GDS2908.tab" ], { "title": "T-cell prolymphocytic leukemia with inv(14)(q11q32)", "description": "Analysis of T-cell prolymphocytic leukemia (T-PLL) cells with the cytogenetic abnormality inv(14)(q11q32). T-PLL is a rare aggressive lymphoma derived from mature T cells. Results provide insight into the pathogenesis of T-PLL.", "type": "Expression profiling by array", "pubmed_id": "17713554", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE5788", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2908", "description": "T-PLL", "sample_id": [ "GSM135264", "GSM135265", "GSM135266", "GSM135267", "GSM135268", "GSM135269" ], "type": "disease state", "id": "GDS2908_1" }, { "dataset_id": "GDS2908", "description": "normal", "sample_id": [ "GSM135270", "GSM135272", "GSM135273", "GSM135274", "GSM135275", "GSM135276", "GSM135277", "GSM135271" ], "type": "disease state", "id": "GDS2908_2" }, { "dataset_id": "GDS2908", "description": "inversion", "sample_id": [ "GSM135264", "GSM135265", "GSM135266", "GSM135267", "GSM135268" ], "type": "genotype/variation", "id": "GDS2908_3" }, { "dataset_id": "GDS2908", "description": "no inversion", "sample_id": [ "GSM135270", "GSM135272", "GSM135273", "GSM135274", "GSM135275", "GSM135276", "GSM135277", "GSM135271", "GSM135269" ], "type": "genotype/variation", "id": "GDS2908_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2908", "version": 1.0, "instances": "14", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2908.tab", "compression": "gz" } ], [ [ "GDS2909.tab" ], { "title": "High fat diet effect on the small intestine of an obesity-prone strain", "description": "Analysis of small intestines of A/J and C57BL/6J animals on a low or high fat diet. The A/J strain is resistant to obesity, C57BL/6J is prone. Results provide insight into the factors contributing to the susceptibility to obesity.", "type": "Expression profiling by array", "pubmed_id": "16822957", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE3433", "order": "none", "update_date": "Aug 27 2007", "subsets": [ { "dataset_id": "GDS2909", "description": "A/J", "sample_id": [ "GSM77380", "GSM77381" ], "type": "strain", "id": "GDS2909_1" }, { "dataset_id": "GDS2909", "description": "C57BL/6J", "sample_id": [ "GSM77382", "GSM77383" ], "type": "strain", "id": "GDS2909_2" }, { "dataset_id": "GDS2909", "description": "low fat diet", "sample_id": [ "GSM77380", "GSM77382" ], "type": "protocol", "id": "GDS2909_3" }, { "dataset_id": "GDS2909", "description": "high fat diet", "sample_id": [ "GSM77381", "GSM77383" ], "type": "protocol", "id": "GDS2909_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2909", "version": 1.0, "instances": "4", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2909.tab", "compression": "gz" } ], [ [ "GDS291.tab" ], { "title": "Ligand screen in B cells: 2-methyl-thio-ATP", "description": "Temporal analysis of effects induced by 100 uM 2-methyl-thio-ATP in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE370", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS291", "description": "30 minute", "sample_id": [ "GSM5420", "GSM5422", "GSM5423" ], "type": "time", "id": "GDS291_1" }, { "dataset_id": "GDS291", "description": "60 minute", "sample_id": [ "GSM5424", "GSM5425" ], "type": "time", "id": "GDS291_2" }, { "dataset_id": "GDS291", "description": "120 minute", "sample_id": [ "GSM5426", "GSM5427", "GSM5428" ], "type": "time", "id": "GDS291_3" }, { "dataset_id": "GDS291", "description": "240 minute", "sample_id": [ "GSM5437", "GSM5438", "GSM5439" ], "type": "time", "id": "GDS291_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS291", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS291.tab", "compression": "gz" } ], [ [ "GDS2911.tab" ], { "title": "Huntington's disease models", "description": "Comparison of striatal cells harboring a mutant huntingtin protein with 111 glutamines to wild type striatal cells treated with 3-nitropropionic acid (3-NP). The size of the polyglutamine tract in huntingtin is correlated with mitochondrial function. 3-NP is a respiratory chain inhibitor.", "type": "Expression profiling by array", "pubmed_id": "17708681", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE3583", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2911", "description": "wild type", "sample_id": [ "GSM82444", "GSM82445", "GSM82446", "GSM82441", "GSM82442", "GSM82443" ], "type": "genotype/variation", "id": "GDS2911_1" }, { "dataset_id": "GDS2911", "description": "huntingtin mutant", "sample_id": [ "GSM82447", "GSM82448", "GSM82449" ], "type": "genotype/variation", "id": "GDS2911_2" }, { "dataset_id": "GDS2911", "description": "3-nitropropionic acid", "sample_id": [ "GSM82441", "GSM82442", "GSM82443" ], "type": "agent", "id": "GDS2911_3" }, { "dataset_id": "GDS2911", "description": "untreated", "sample_id": [ "GSM82447", "GSM82448", "GSM82449", "GSM82444", "GSM82445", "GSM82446" ], "type": "agent", "id": "GDS2911_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2911", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2911.tab", "compression": "gz" } ], [ [ "GDS2912.tab" ], { "title": "Huntington's disease transgenic model: time course", "description": "Analysis of brains of R6/1 transgenic animals at 18 to 27 weeks of age. The R6/1 transgenic animal expresses exon 1 of the mutant human huntingtin gene that contains 115 CAG trinucleotide repeats. Results provide insight into the early pathogenesis of HD.", "type": "Expression profiling by array", "pubmed_id": "17696994", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE3621", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2912", "description": "wild type", "sample_id": [ "GSM83862", "GSM83863", "GSM83866", "GSM83870", "GSM83871", "GSM83872", "GSM83873", "GSM83874", "GSM83876" ], "type": "strain", "id": "GDS2912_1" }, { "dataset_id": "GDS2912", "description": "R6/1 transgenic", "sample_id": [ "GSM83864", "GSM83865", "GSM83867", "GSM83868", "GSM83869", "GSM83875", "GSM83877", "GSM83878", "GSM83879" ], "type": "strain", "id": "GDS2912_2" }, { "dataset_id": "GDS2912", "description": "18 wk", "sample_id": [ "GSM83863", "GSM83869", "GSM83872", "GSM83873", "GSM83878", "GSM83879" ], "type": "age", "id": "GDS2912_3" }, { "dataset_id": "GDS2912", "description": "22 wk", "sample_id": [ "GSM83867", "GSM83868", "GSM83870", "GSM83874", "GSM83876" ], "type": "age", "id": "GDS2912_4" }, { "dataset_id": "GDS2912", "description": "27 wk", "sample_id": [ "GSM83862", "GSM83864", "GSM83865", "GSM83866", "GSM83871", "GSM83875", "GSM83877" ], "type": "age", "id": "GDS2912_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2912", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2912.tab", "compression": "gz" } ], [ [ "GDS2913.tab" ], { "title": "Diethylstilbestrol effect on pituitary glands of males of various inbred strains", "description": "Analyis of anterior pituitary glands of ACI, Copenhagen, and Brown Norway males following treatment with the synthetic estrogen diethylstilbestrol (DES).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE4028", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2913", "description": "ACI", "sample_id": [ "GSM92200", "GSM92201", "GSM92202", "GSM92203", "GSM92204", "GSM92205", "GSM92206" ], "type": "strain", "id": "GDS2913_1" }, { "dataset_id": "GDS2913", "description": "Copenhagen", "sample_id": [ "GSM92207", "GSM92208", "GSM92209", "GSM92210", "GSM92211", "GSM92212", "GSM92213" ], "type": "strain", "id": "GDS2913_2" }, { "dataset_id": "GDS2913", "description": "Brown Norway", "sample_id": [ "GSM92214", "GSM92215", "GSM92216", "GSM92217", "GSM92218", "GSM92219", "GSM92220" ], "type": "strain", "id": "GDS2913_3" }, { "dataset_id": "GDS2913", "description": "control", "sample_id": [ "GSM92200", "GSM92201", "GSM92202", "GSM92207", "GSM92208", "GSM92209", "GSM92214", "GSM92215", "GSM92216" ], "type": "agent", "id": "GDS2913_4" }, { "dataset_id": "GDS2913", "description": "DES", "sample_id": [ "GSM92203", "GSM92204", "GSM92205", "GSM92206", "GSM92210", "GSM92211", "GSM92212", "GSM92213", "GSM92217", "GSM92218", "GSM92219", "GSM92220" ], "type": "agent", "id": "GDS2913_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2913", "version": 1.0, "instances": "21", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2913.tab", "compression": "gz" } ], [ [ "GDS2914.tab" ], { "title": "Caffeine effect: time course and dose response", "description": "Analysis of cells treated with a low dose of caffeine at 2 mM or a high one at 20 mM for 5 , 15, or 90 minutes. Caffeine is a natural purine analogue that elicits pleiotropic effects leading to cell death. Results provide insight into the mechanism of action of caffeine.", "type": "Expression profiling by array", "pubmed_id": "16925551", "platform": "GPL3250", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted oligonucleotide", "feature_count": "15488", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log ratio", "reference_series": "GSE4049", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2914", "description": "low", "sample_id": [ "GSM91426", "GSM91428", "GSM91430", "GSM91432", "GSM91434", "GSM91436", "GSM91438", "GSM91440", "GSM91443", "GSM91876", "GSM91878", "GSM91881", "GSM91883", "GSM91884", "GSM91887", "GSM91889", "GSM91890", "GSM91893" ], "type": "dose", "id": "GDS2914_1" }, { "dataset_id": "GDS2914", "description": "high", "sample_id": [ "GSM91427", "GSM91429", "GSM91431", "GSM91433", "GSM91435", "GSM91437", "GSM91439", "GSM91442", "GSM91444", "GSM91877", "GSM91880", "GSM91882", "GSM91885", "GSM91886", "GSM91888", "GSM91891", "GSM91892", "GSM91894" ], "type": "dose", "id": "GDS2914_2" }, { "dataset_id": "GDS2914", "description": "5 min", "sample_id": [ "GSM91427", "GSM91428", "GSM91433", "GSM91434", "GSM91439", "GSM91440", "GSM91880", "GSM91881", "GSM91886", "GSM91887", "GSM91892", "GSM91893" ], "type": "time", "id": "GDS2914_3" }, { "dataset_id": "GDS2914", "description": "15 min", "sample_id": [ "GSM91429", "GSM91430", "GSM91435", "GSM91436", "GSM91442", "GSM91443", "GSM91877", "GSM91878", "GSM91882", "GSM91883", "GSM91890", "GSM91891" ], "type": "time", "id": "GDS2914_4" }, { "dataset_id": "GDS2914", "description": "90 min", "sample_id": [ "GSM91426", "GSM91431", "GSM91432", "GSM91437", "GSM91438", "GSM91444", "GSM91876", "GSM91884", "GSM91885", "GSM91888", "GSM91889", "GSM91894" ], "type": "time", "id": "GDS2914_5" }, { "dataset_id": "GDS2914", "description": "caffeine", "sample_id": [ "GSM91437", "GSM91438", "GSM91439", "GSM91440", "GSM91442", "GSM91443", "GSM91888", "GSM91889", "GSM91890", "GSM91891", "GSM91892", "GSM91893" ], "type": "agent", "id": "GDS2914_6" }, { "dataset_id": "GDS2914", "description": "calcofluor white", "sample_id": [ "GSM91426", "GSM91427", "GSM91428", "GSM91429", "GSM91430", "GSM91444", "GSM91876", "GSM91877", "GSM91878", "GSM91880", "GSM91881", "GSM91894" ], "type": "agent", "id": "GDS2914_7" }, { "dataset_id": "GDS2914", "description": "congo red", "sample_id": [ "GSM91431", "GSM91432", "GSM91433", "GSM91434", "GSM91435", "GSM91436", "GSM91882", "GSM91883", "GSM91884", "GSM91885", "GSM91886", "GSM91887" ], "type": "agent", "id": "GDS2914_8" } ], "taxid": "4932", "genes": 6370, "aggregation_function": "mean", "name": "GDS2914", "version": 1.0, "instances": "36", "variables": 6374, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2914.tab", "compression": "gz" } ], [ [ "GDS2915.tab" ], { "title": "Aging liver", "description": "Analysis of livers of Fisher F344/N males at 32, 58, and 84 weeks of age. Results provide insight into age-associated changes in the capacity of the liver to metabolize xenobiotic compounds.", "type": "Expression profiling by array", "pubmed_id": "17366318", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "38", "value_type": "log ratio", "reference_series": "GSE4270", "order": "ordered", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2915", "description": "32 wk", "sample_id": [ "GSM97277", "GSM97278", "GSM97279", "GSM97280", "GSM97281", "GSM97282", "GSM97283", "GSM97284", "GSM97285", "GSM97286", "GSM97287", "GSM97288", "GSM97289", "GSM97290", "GSM97291" ], "type": "age", "id": "GDS2915_1" }, { "dataset_id": "GDS2915", "description": "58 wk", "sample_id": [ "GSM97292", "GSM97293", "GSM97294", "GSM97295", "GSM97296", "GSM97297", "GSM97298", "GSM97299", "GSM97300", "GSM97301" ], "type": "age", "id": "GDS2915_2" }, { "dataset_id": "GDS2915", "description": "84 wk", "sample_id": [ "GSM97302", "GSM97303", "GSM97304", "GSM97305", "GSM97306", "GSM97307", "GSM97308", "GSM97309", "GSM97310", "GSM97311", "GSM97312", "GSM97313", "GSM97314" ], "type": "age", "id": "GDS2915_3" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS2915", "version": 1.0, "instances": "38", "variables": 17252, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2915.tab", "compression": "gz" } ], [ [ "GDS2916.tab" ], { "title": "Liver reponse to an atherogenic diet and atorvastatin treatment", "description": "Analysis of livers of C57B/L females fed an atherogenic diet for 10 weeks, with the last 3 weeks of the diet combined with atorvastatin treatment. Atorvastatin is a statin used for lowering cholesterol.", "type": "Expression profiling by array", "pubmed_id": "18590051", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE4285", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2916", "description": "control", "sample_id": [ "GSM97740", "GSM97743" ], "type": "protocol", "id": "GDS2916_1" }, { "dataset_id": "GDS2916", "description": "atherogenic diet", "sample_id": [ "GSM97741", "GSM97744", "GSM97742" ], "type": "protocol", "id": "GDS2916_2" }, { "dataset_id": "GDS2916", "description": "untreated", "sample_id": [ "GSM97740", "GSM97743", "GSM97741", "GSM97744" ], "type": "agent", "id": "GDS2916_3" }, { "dataset_id": "GDS2916", "description": "atorvastatin", "sample_id": [ "GSM97742" ], "type": "agent", "id": "GDS2916_4" }, { "dataset_id": "GDS2916", "description": "1 wk", "sample_id": [ "GSM97743", "GSM97744" ], "type": "time", "id": "GDS2916_5" }, { "dataset_id": "GDS2916", "description": "10 wk", "sample_id": [ "GSM97740", "GSM97741", "GSM97742" ], "type": "time", "id": "GDS2916_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2916", "version": 1.0, "instances": "5", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2916.tab", "compression": "gz" } ], [ [ "GDS2917.tab" ], { "title": "Various brain regions of several inbred strains", "description": "Analysis of 5 different brain regions from 6 inbred strains. Results provide insight into strain-specific and brain region-specific patterns of gene expression.", "type": "Expression profiling by array", "pubmed_id": "17324278", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "61", "value_type": "count", "reference_series": "GSE4734", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2917", "description": "bed nucleus of the stria terminalis", "sample_id": [ "GSM106992", "GSM106993", "GSM106994", "GSM106995", "GSM106996", "GSM106997", "GSM106998", "GSM106999", "GSM107000", "GSM107001", "GSM107002", "GSM107003", "GSM107004" ], "type": "tissue", "id": "GDS2917_1" }, { "dataset_id": "GDS2917", "description": "hippocampus", "sample_id": [ "GSM107005", "GSM107006", "GSM107007", "GSM107008", "GSM107009", "GSM107010", "GSM107011", "GSM107012", "GSM107013", "GSM107014", "GSM107015", "GSM107016" ], "type": "tissue", "id": "GDS2917_2" }, { "dataset_id": "GDS2917", "description": "hypothalamus", "sample_id": [ "GSM107017", "GSM107018", "GSM107019", "GSM107020", "GSM107021", "GSM107022", "GSM107023", "GSM107024", "GSM107025", "GSM107026", "GSM107027", "GSM107028" ], "type": "tissue", "id": "GDS2917_3" }, { "dataset_id": "GDS2917", "description": "periaqueductal gray", "sample_id": [ "GSM107029", "GSM107030", "GSM107031", "GSM107032", "GSM107033", "GSM107034", "GSM107035", "GSM107036", "GSM107037", "GSM107038", "GSM107039", "GSM107040" ], "type": "tissue", "id": "GDS2917_4" }, { "dataset_id": "GDS2917", "description": "pituitary gland", "sample_id": [ "GSM107041", "GSM107042", "GSM107043", "GSM107044", "GSM107045", "GSM107046", "GSM107047", "GSM107048", "GSM107049", "GSM107050", "GSM107051", "GSM107052" ], "type": "tissue", "id": "GDS2917_5" }, { "dataset_id": "GDS2917", "description": "129S6/SvEvTac", "sample_id": [ "GSM106992", "GSM106993", "GSM107005", "GSM107006", "GSM107017", "GSM107018", "GSM107029", "GSM107030", "GSM107041", "GSM107042" ], "type": "strain", "id": "GDS2917_6" }, { "dataset_id": "GDS2917", "description": "A/J", "sample_id": [ "GSM106994", "GSM106995", "GSM107007", "GSM107008", "GSM107019", "GSM107020", "GSM107031", "GSM107032", "GSM107043", "GSM107044" ], "type": "strain", "id": "GDS2917_7" }, { "dataset_id": "GDS2917", "description": "C57BL/6J", "sample_id": [ "GSM106996", "GSM106997", "GSM107009", "GSM107010", "GSM107021", "GSM107022", "GSM107033", "GSM107034", "GSM107045", "GSM107046" ], "type": "strain", "id": "GDS2917_8" }, { "dataset_id": "GDS2917", "description": "C3H/HeJ", "sample_id": [ "GSM106998", "GSM106999", "GSM107000", "GSM107011", "GSM107012", "GSM107023", "GSM107024", "GSM107035", "GSM107036", "GSM107047", "GSM107048" ], "type": "strain", "id": "GDS2917_9" }, { "dataset_id": "GDS2917", "description": "DBA/2J", "sample_id": [ "GSM107001", "GSM107002", "GSM107013", "GSM107014", "GSM107025", "GSM107026", "GSM107037", "GSM107038", "GSM107049", "GSM107050" ], "type": "strain", "id": "GDS2917_10" }, { "dataset_id": "GDS2917", "description": "FVB/NJ", "sample_id": [ "GSM107003", "GSM107004", "GSM107015", "GSM107016", "GSM107027", "GSM107028", "GSM107039", "GSM107040", "GSM107051", "GSM107052" ], "type": "strain", "id": "GDS2917_11" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2917", "version": 1.0, "instances": "61", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2917.tab", "compression": "gz" } ], [ [ "GDS2918.tab" ], { "title": "Colorectal cancer markers in plasma", "description": "Analysis of blood plasma from patients with colorectal cancer. Results used to identify gene markers for colorectal cancer.", "type": "Expression profiling by array", "pubmed_id": "17717129", "platform": "GPL3014", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15552", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log ratio", "reference_series": "GSE4988", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS2918", "description": "colorectal cancer", "sample_id": [ "GSM112207", "GSM112208", "GSM112299", "GSM112300", "GSM112301", "GSM112302", "GSM112303", "GSM112304", "GSM112305", "GSM112306", "GSM112307", "GSM112308" ], "type": "disease state", "id": "GDS2918_1" }, { "dataset_id": "GDS2918", "description": "control", "sample_id": [ "GSM112309", "GSM112310", "GSM112311", "GSM112312", "GSM112313", "GSM112314", "GSM112315", "GSM112316" ], "type": "disease state", "id": "GDS2918_2" } ], "taxid": "9606", "genes": 12983, "aggregation_function": "mean", "name": "GDS2918", "version": 1.0, "instances": "20", "variables": 12985, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2918.tab", "compression": "gz" } ], [ [ "GDS2919.tab" ], { "title": "Tremorogenic chemical harmane effect on astrocytes", "description": "Analysis of astrocytes treated with the tremorogenic chemical harmane. Increased blood harmane concentration is associated with an increased risk of essential tremor. Astrocyte dysfunction is associated with neurodegenerative diseases.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5080", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2919", "description": "control", "sample_id": [ "GSM113365", "GSM113366", "GSM113367" ], "type": "agent", "id": "GDS2919_1" }, { "dataset_id": "GDS2919", "description": "harmane", "sample_id": [ "GSM113374", "GSM113375", "GSM113376" ], "type": "agent", "id": "GDS2919_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2919", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2919.tab", "compression": "gz" } ], [ [ "GDS292.tab" ], { "title": "Ligand screen in B cells: antigen IgM", "description": "Temporal analysis of effects induced by 0.3 uM antigen IgM in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE371", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS292", "description": "30 minute", "sample_id": [ "GSM5440", "GSM5441", "GSM5442" ], "type": "time", "id": "GDS292_1" }, { "dataset_id": "GDS292", "description": "60 minute", "sample_id": [ "GSM5443", "GSM5444", "GSM5445" ], "type": "time", "id": "GDS292_2" }, { "dataset_id": "GDS292", "description": "120 minute", "sample_id": [ "GSM5446", "GSM5447", "GSM5448" ], "type": "time", "id": "GDS292_3" }, { "dataset_id": "GDS292", "description": "240 minute", "sample_id": [ "GSM5449", "GSM5450", "GSM5451" ], "type": "time", "id": "GDS292_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS292", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS292.tab", "compression": "gz" } ], [ [ "GDS2920.tab" ], { "title": "Testosterone effect on skeletal muscles of HIV-infected males experiencing weight loss", "description": "Analysis of skeletal muscles of HIV-infected males experiencing weight loss after treatment with testosterone. HIV-associated wasting and weight loss are clinically significant concerns. Results provide insight into androgen action and the potential of anabolic therapies for wasting and sarcopenia.", "type": "Expression profiling by array", "pubmed_id": "17440010", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE5106", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2920", "description": "placebo", "sample_id": [ "GSM113921", "GSM115323", "GSM115325", "GSM115326", "GSM115327", "GSM115328", "GSM115329", "GSM115330", "GSM115331" ], "type": "agent", "id": "GDS2920_1" }, { "dataset_id": "GDS2920", "description": "testosterone", "sample_id": [ "GSM115332", "GSM115333", "GSM115334", "GSM115335", "GSM115336", "GSM115337", "GSM115338", "GSM115339", "GSM115340", "GSM115341" ], "type": "agent", "id": "GDS2920_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2920", "version": 1.0, "instances": "19", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2920.tab", "compression": "gz" } ], [ [ "GDS2921.tab" ], { "title": "Wilms' tumor suppressor (WT1) targets: time course", "description": "Analysis of U2OS osteosarcoma cells at various time points up to 12 hours following induction of a tetracycline-repressible Wilms' tumor 1 (WT1) gene encoding the -KTS isoform. WT1 encodes a zinc finger transcription factor that is involved in organ development.", "type": "Expression profiling by array", "pubmed_id": "17430890", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5117", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2921", "description": "0 h", "sample_id": [ "GSM115525" ], "type": "time", "id": "GDS2921_1" }, { "dataset_id": "GDS2921", "description": "4 h", "sample_id": [ "GSM115523" ], "type": "time", "id": "GDS2921_2" }, { "dataset_id": "GDS2921", "description": "8 h", "sample_id": [ "GSM115524" ], "type": "time", "id": "GDS2921_3" }, { "dataset_id": "GDS2921", "description": "12 h", "sample_id": [ "GSM115522" ], "type": "time", "id": "GDS2921_4" }, { "dataset_id": "GDS2921", "description": "uninduced", "sample_id": [ "GSM115525" ], "type": "protocol", "id": "GDS2921_5" }, { "dataset_id": "GDS2921", "description": "induced", "sample_id": [ "GSM115522", "GSM115523", "GSM115524" ], "type": "protocol", "id": "GDS2921_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2921", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2921.tab", "compression": "gz" } ], [ [ "GDS2922.tab" ], { "title": "Ascending aortic aneurysms", "description": "Analysis of aneurysmal tissue from ascending aortas of patients with normal tricuspid aortic valves or abnormal bicuspid aortic valves (BAVs). BAV is a congenital anomaly associated with an increased risk for ascending aortic aneurysm (AscAAs). Results provide insight into the pathogenesis of AscAA.", "type": "Expression profiling by array", "pubmed_id": "17502243", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE5180", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2922", "description": "bicuspid aortic valve", "sample_id": [ "GSM116780", "GSM116781", "GSM116782", "GSM116783", "GSM116784", "GSM116785", "GSM116786", "GSM116787", "GSM116788", "GSM116789", "GSM116790", "GSM116791", "GSM116792" ], "type": "specimen", "id": "GDS2922_1" }, { "dataset_id": "GDS2922", "description": "tricuspid aortic valve", "sample_id": [ "GSM116793", "GSM116794", "GSM116795", "GSM116796", "GSM116797", "GSM116798", "GSM116799", "GSM116800", "GSM116801", "GSM116802", "GSM116803", "GSM116804" ], "type": "specimen", "id": "GDS2922_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2922", "version": 1.0, "instances": "25", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2922.tab", "compression": "gz" } ], [ [ "GDS2923.tab" ], { "title": "Testis response to histone deacetylase inhibitor trichostatin A: time course", "description": "Analysis of testes at various time points up to 10 hours following subcutaneous injection of the histone deacetylase inhibitor trichostatin A (TSA). TSA treatment is followed by infertility due to the apoptosis of pachytene spermatocytes.", "type": "Expression profiling by array", "pubmed_id": "18046049", "platform": "GPL4053", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10752", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE5448", "order": "none", "update_date": "Aug 29 2007", "subsets": [ { "dataset_id": "GDS2923", "description": "untreated", "sample_id": [ "GSM124573", "GSM124852" ], "type": "agent", "id": "GDS2923_1" }, { "dataset_id": "GDS2923", "description": "trichostatin A", "sample_id": [ "GSM124855", "GSM124856", "GSM124857", "GSM124858", "GSM124859", "GSM124860", "GSM124861", "GSM124862" ], "type": "agent", "id": "GDS2923_2" }, { "dataset_id": "GDS2923", "description": "control", "sample_id": [ "GSM124573", "GSM124852" ], "type": "time", "id": "GDS2923_3" }, { "dataset_id": "GDS2923", "description": "2.5 h", "sample_id": [ "GSM124855", "GSM124856" ], "type": "time", "id": "GDS2923_4" }, { "dataset_id": "GDS2923", "description": "5 h", "sample_id": [ "GSM124857", "GSM124858" ], "type": "time", "id": "GDS2923_5" }, { "dataset_id": "GDS2923", "description": "7.5 h", "sample_id": [ "GSM124859", "GSM124860" ], "type": "time", "id": "GDS2923_6" }, { "dataset_id": "GDS2923", "description": "10 h", "sample_id": [ "GSM124861", "GSM124862" ], "type": "time", "id": "GDS2923_7" } ], "taxid": "10090", "genes": 9941, "aggregation_function": "mean", "name": "GDS2923", "version": 1.0, "instances": "10", "variables": 9944, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2923.tab", "compression": "gz" } ], [ [ "GDS2924.tab" ], { "title": "Diethylstilbestrol effect on the prepubertal uterus: dose response", "description": "Analysis of uteri of prepubertal animals treated with diethylstilbestrol (DES) at doses of 1, 10, or 1000 ug/kg/day. DES treatment of neonates results in the development of uterine adenocarcinomas. Results provide insight into the mechanisms underlying the initiation of DES-induced carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "17394237", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE5825", "order": "ordered", "update_date": "Aug 29 2007", "subsets": [ { "dataset_id": "GDS2924", "description": "1 ug/kg/d", "sample_id": [ "GSM135595", "GSM135596" ], "type": "dose", "id": "GDS2924_1" }, { "dataset_id": "GDS2924", "description": "10 ug/kg/d", "sample_id": [ "GSM135597", "GSM135598" ], "type": "dose", "id": "GDS2924_2" }, { "dataset_id": "GDS2924", "description": "1000 ug/kg/d", "sample_id": [ "GSM135599", "GSM135600" ], "type": "dose", "id": "GDS2924_3" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS2924", "version": 1.0, "instances": "6", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2924.tab", "compression": "gz" } ], [ [ "GDS2925.tab" ], { "title": "Various weak organic acids effect on anaerobic yeast chemostat cultures", "description": "Analysis of anaerobic chemostat cultures of Saccharomyces cerevisae exposed to one of several weak organic acids. Weak organic acids are used as preservatives in food and beverages. Yeasts are able to proliferate at the maximum legal dosage of such preservatives.", "type": "Expression profiling by array", "pubmed_id": "17484738", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE5926", "order": "none", "update_date": "Aug 29 2007", "subsets": [ { "dataset_id": "GDS2925", "description": "control", "sample_id": [ "GSM137497", "GSM137498", "GSM137675" ], "type": "stress", "id": "GDS2925_1" }, { "dataset_id": "GDS2925", "description": "acetate", "sample_id": [ "GSM137676", "GSM137677", "GSM137678" ], "type": "stress", "id": "GDS2925_2" }, { "dataset_id": "GDS2925", "description": "benzoate", "sample_id": [ "GSM137679", "GSM137680", "GSM137681" ], "type": "stress", "id": "GDS2925_3" }, { "dataset_id": "GDS2925", "description": "propionate", "sample_id": [ "GSM137682", "GSM137683", "GSM137684" ], "type": "stress", "id": "GDS2925_4" }, { "dataset_id": "GDS2925", "description": "sorbate", "sample_id": [ "GSM137685", "GSM137686", "GSM137687" ], "type": "stress", "id": "GDS2925_5" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2925", "version": 1.0, "instances": "15", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2925.tab", "compression": "gz" } ], [ [ "GDS2926.tab" ], { "title": "Megakaryocytic differentiation: time course", "description": "Temporal analysis of phorbol ester-treated CHRF-288-11 megakaryoblastic cells induced to undergo megakaryocytic (Mk) differentiation and primary Mk (PriMk) cells derived from cytokine-treated CD34+ peripheral blood cells. Results provide insight into molecular mechanisms underlying megakaryopoiesis.", "type": "Expression profiling by array", "pubmed_id": "17309828", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "77", "value_type": "log e ratio", "reference_series": "GSE8914", "order": "none", "update_date": "Aug 30 2007", "subsets": [ { "dataset_id": "GDS2926", "description": "CHRF-288-11", "sample_id": [ "GSM87964", "GSM87965", "GSM87966", "GSM87985", "GSM87986", "GSM87961", "GSM87967", "GSM87968", "GSM87987", "GSM87969", "GSM87988", "GSM87989", "GSM87970", "GSM87971", "GSM87990", "GSM87991", "GSM87972", "GSM87992", "GSM87973", "GSM87993", "GSM87974", "GSM87994", "GSM87962", "GSM87963", "GSM87975", "GSM87983", "GSM87995", "GSM87976", "GSM87977", "GSM87996", "GSM87997", "GSM87978", "GSM87979", "GSM87998", "GSM87999", "GSM87980", "GSM87984", "GSM88000", "GSM87981", "GSM87982", "GSM88001" ], "type": "cell line", "id": "GDS2926_1" }, { "dataset_id": "GDS2926", "description": "peripheral blood CD34plus", "sample_id": [ "GSM88002", "GSM88003", "GSM88023", "GSM88026", "GSM88028", "GSM88035", "GSM88014", "GSM88022", "GSM88034", "GSM88004", "GSM88015", "GSM88005", "GSM88006", "GSM88016", "GSM88007", "GSM88017", "GSM88029", "GSM88008", "GSM88009", "GSM88018", "GSM88024", "GSM88030", "GSM88036", "GSM88010", "GSM88011", "GSM88019", "GSM88027", "GSM88031", "GSM88012", "GSM88020", "GSM88032", "GSM88037", "GSM88013", "GSM88021", "GSM88025", "GSM88033" ], "type": "cell line", "id": "GDS2926_2" }, { "dataset_id": "GDS2926", "description": "cytokines (TPO, IL-3, Flt3-L)", "sample_id": [ "GSM88014", "GSM88022", "GSM88034", "GSM88004", "GSM88015", "GSM88005", "GSM88006", "GSM88016", "GSM88007", "GSM88017", "GSM88029", "GSM88008", "GSM88009", "GSM88018", "GSM88024", "GSM88030", "GSM88036", "GSM88010", "GSM88011", "GSM88019", "GSM88027", "GSM88031", "GSM88012", "GSM88020", "GSM88032", "GSM88037", "GSM88013", "GSM88021", "GSM88025", "GSM88033" ], "type": "agent", "id": "GDS2926_3" }, { "dataset_id": "GDS2926", "description": "DMSO", "sample_id": [ "GSM87961", "GSM87962", "GSM87963", "GSM87983", "GSM87984" ], "type": "agent", "id": "GDS2926_4" }, { "dataset_id": "GDS2926", "description": "phorbol ester (PMA)", "sample_id": [ "GSM87967", "GSM87968", "GSM87987", "GSM87969", "GSM87988", "GSM87989", "GSM87970", "GSM87971", "GSM87990", "GSM87991", "GSM87972", "GSM87992", "GSM87973", "GSM87993", "GSM87974", "GSM87994", "GSM87975", "GSM87995", "GSM87976", "GSM87977", "GSM87996", "GSM87997", "GSM87978", "GSM87979", "GSM87998", "GSM87999", "GSM87980", "GSM88000", "GSM87981", "GSM87982", "GSM88001" ], "type": "agent", "id": "GDS2926_5" }, { "dataset_id": "GDS2926", "description": "untreated", "sample_id": [ "GSM87964", "GSM87965", "GSM87966", "GSM87985", "GSM87986", "GSM88002", "GSM88003", "GSM88023", "GSM88026", "GSM88028", "GSM88035" ], "type": "agent", "id": "GDS2926_6" }, { "dataset_id": "GDS2926", "description": "control", "sample_id": [ "GSM87964", "GSM87965", "GSM87966", "GSM87985", "GSM87986", "GSM88002", "GSM88003", "GSM88023", "GSM88026", "GSM88028", "GSM88035" ], "type": "time", "id": "GDS2926_7" }, { "dataset_id": "GDS2926", "description": "1 hr", "sample_id": [ "GSM87970", "GSM87971", "GSM87990", "GSM87991" ], "type": "time", "id": "GDS2926_8" }, { "dataset_id": "GDS2926", "description": "3 hr", "sample_id": [ "GSM87974", "GSM87994" ], "type": "time", "id": "GDS2926_9" }, { "dataset_id": "GDS2926", "description": "6 hr", "sample_id": [ "GSM87978", "GSM87979", "GSM87998", "GSM87999" ], "type": "time", "id": "GDS2926_10" }, { "dataset_id": "GDS2926", "description": "12 hr", "sample_id": [ "GSM87968", "GSM87987" ], "type": "time", "id": "GDS2926_11" }, { "dataset_id": "GDS2926", "description": "1 day", "sample_id": [ "GSM88004", "GSM88015", "GSM87969", "GSM87988", "GSM87989" ], "type": "time", "id": "GDS2926_12" }, { "dataset_id": "GDS2926", "description": "2 days", "sample_id": [ "GSM88005", "GSM88006", "GSM88016", "GSM87972", "GSM87992" ], "type": "time", "id": "GDS2926_13" }, { "dataset_id": "GDS2926", "description": "3 days", "sample_id": [ "GSM88007", "GSM88017", "GSM88029", "GSM87973", "GSM87993" ], "type": "time", "id": "GDS2926_14" }, { "dataset_id": "GDS2926", "description": "4 days", "sample_id": [ "GSM88008", "GSM88009", "GSM88018", "GSM88024", "GSM88030", "GSM88036", "GSM87962", "GSM87963", "GSM87983", "GSM87975", "GSM87995" ], "type": "time", "id": "GDS2926_15" }, { "dataset_id": "GDS2926", "description": "5 days", "sample_id": [ "GSM88010", "GSM88011", "GSM88019", "GSM88027", "GSM88031", "GSM87976", "GSM87977", "GSM87996", "GSM87997" ], "type": "time", "id": "GDS2926_16" }, { "dataset_id": "GDS2926", "description": "7 days", "sample_id": [ "GSM88012", "GSM88020", "GSM88032", "GSM88037", "GSM87984", "GSM87980", "GSM88000" ], "type": "time", "id": "GDS2926_17" }, { "dataset_id": "GDS2926", "description": "9 days", "sample_id": [ "GSM88013", "GSM88021", "GSM88025", "GSM88033", "GSM87981", "GSM87982", "GSM88001" ], "type": "time", "id": "GDS2926_18" }, { "dataset_id": "GDS2926", "description": "12 days", "sample_id": [ "GSM88014", "GSM88022", "GSM88034", "GSM87961", "GSM87967" ], "type": "time", "id": "GDS2926_19" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS2926", "version": 1.0, "instances": "77", "variables": 18359, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2926.tab", "compression": "gz" } ], [ [ "GDS2927.tab" ], { "title": "2,3,7,8-tetrachlorodibenzo-p-dioxin effect on the ovary: dose response (I)", "description": "Analysis of ovaries following exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) at concentrations of up to 100 parts per billion (ppb). TCDD is a reproductive toxicant and endocrine disruptor in vertebrates. Results provide insight into molecular mechanisms underlying TCDD toxicity.", "type": "Expression profiling by array", "pubmed_id": "17884332", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4859", "order": "ordered", "update_date": "Sep 04 2007", "subsets": [ { "dataset_id": "GDS2927", "description": "0 ppb", "sample_id": [ "GSM109253" ], "type": "dose", "id": "GDS2927_1" }, { "dataset_id": "GDS2927", "description": "10 ppb", "sample_id": [ "GSM109255" ], "type": "dose", "id": "GDS2927_2" }, { "dataset_id": "GDS2927", "description": "40 ppb", "sample_id": [ "GSM109257" ], "type": "dose", "id": "GDS2927_3" }, { "dataset_id": "GDS2927", "description": "100 ppb", "sample_id": [ "GSM109259" ], "type": "dose", "id": "GDS2927_4" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2927", "version": 1.0, "instances": "4", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2927.tab", "compression": "gz" } ], [ [ "GDS2928.tab" ], { "title": "2,3,7,8-tetrachlorodibenzo-p-dioxin effect on the ovary: dose response (II)", "description": "Analysis of ovaries following exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) at concentrations of up to 100 parts per billion (ppb). TCDD is a reproductive toxicant and endocrine disruptor in vertebrates. Results provide insight into molecular mechanisms underlying TCDD toxicity.", "type": "Expression profiling by array", "pubmed_id": "17884332", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE4859", "order": "ordered", "update_date": "Sep 04 2007", "subsets": [ { "dataset_id": "GDS2928", "description": "0 ppb", "sample_id": [ "GSM109254" ], "type": "dose", "id": "GDS2928_1" }, { "dataset_id": "GDS2928", "description": "10 ppb", "sample_id": [ "GSM109256" ], "type": "dose", "id": "GDS2928_2" }, { "dataset_id": "GDS2928", "description": "40 ppb", "sample_id": [ "GSM109258" ], "type": "dose", "id": "GDS2928_3" }, { "dataset_id": "GDS2928", "description": "100 ppb", "sample_id": [ "GSM109260" ], "type": "dose", "id": "GDS2928_4" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2928", "version": 1.0, "instances": "4", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2928.tab", "compression": "gz" } ], [ [ "GDS2929.tab" ], { "title": "Aging lungs and genetic background", "description": "Analysis of lungs of C57BL/6J and DBA/2J animals at up to 26 months of age. Aging lungs of C57BL/6J and DBA/2J strains differ in physiology and morphometry. Results provide insight into the influence of genetic background on the variability of age-dependent changes in lung structure and function.", "type": "Expression profiling by array", "pubmed_id": "17726092", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE6591", "order": "none", "update_date": "Jun 25 2008", "subsets": [ { "dataset_id": "GDS2929", "description": "C57BL/6J", "sample_id": [ "GSM152256", "GSM152257", "GSM152258", "GSM152259", "GSM152260", "GSM152261", "GSM152262", "GSM152263", "GSM152264" ], "type": "strain", "id": "GDS2929_1" }, { "dataset_id": "GDS2929", "description": "DBA/2J", "sample_id": [ "GSM152265", "GSM152266", "GSM152267", "GSM152268", "GSM152269", "GSM152270" ], "type": "strain", "id": "GDS2929_2" }, { "dataset_id": "GDS2929", "description": "2 mo", "sample_id": [ "GSM152256", "GSM152257", "GSM152258", "GSM152265", "GSM152266", "GSM152267" ], "type": "age", "id": "GDS2929_3" }, { "dataset_id": "GDS2929", "description": "18 mo", "sample_id": [ "GSM152259", "GSM152260", "GSM152261", "GSM152268", "GSM152269", "GSM152270" ], "type": "age", "id": "GDS2929_4" }, { "dataset_id": "GDS2929", "description": "26 mo", "sample_id": [ "GSM152262", "GSM152263", "GSM152264" ], "type": "age", "id": "GDS2929_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2929", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2929.tab", "compression": "gz" } ], [ [ "GDS293.tab" ], { "title": "Ligand screen in B cells: B-cell activating factor", "description": "Temporal analysis of effects induced by 3.68 nM B-cell activating factor BAFF in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE372", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS293", "description": "30 minute", "sample_id": [ "GSM5452", "GSM5453", "GSM5454" ], "type": "time", "id": "GDS293_1" }, { "dataset_id": "GDS293", "description": "60 minute", "sample_id": [ "GSM5455", "GSM5456" ], "type": "time", "id": "GDS293_2" }, { "dataset_id": "GDS293", "description": "120 minute", "sample_id": [ "GSM5457", "GSM5458", "GSM5459" ], "type": "time", "id": "GDS293_3" }, { "dataset_id": "GDS293", "description": "240 minute", "sample_id": [ "GSM5460", "GSM5461", "GSM5462" ], "type": "time", "id": "GDS293_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS293", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS293.tab", "compression": "gz" } ], [ [ "GDS2930.tab" ], { "title": "Cis-urocanic acid effect on keratinocytes", "description": "Analysis of keratinocytes treated with cis-urocanic acid (UCA). UCA is an epidermal chromophore that undergoes trans to cis photoisomerization following ultraviolet radiation exposure. Results provide insight into the effect of cis-UCA on the cell-mediated immune response in the skin.", "type": "Expression profiling by array", "pubmed_id": "18566387", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE8760", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2930", "description": "skin type I", "sample_id": [ "GSM217619", "GSM217620", "GSM217623", "GSM217624" ], "type": "individual", "id": "GDS2930_1" }, { "dataset_id": "GDS2930", "description": "skin type III", "sample_id": [ "GSM217626", "GSM217627", "GSM217629", "GSM217630" ], "type": "individual", "id": "GDS2930_2" }, { "dataset_id": "GDS2930", "description": "control", "sample_id": [ "GSM217619", "GSM217627" ], "type": "agent", "id": "GDS2930_3" }, { "dataset_id": "GDS2930", "description": "cis-UCA", "sample_id": [ "GSM217620", "GSM217629" ], "type": "agent", "id": "GDS2930_4" }, { "dataset_id": "GDS2930", "description": "trans-UCA", "sample_id": [ "GSM217623", "GSM217630" ], "type": "agent", "id": "GDS2930_5" }, { "dataset_id": "GDS2930", "description": "UV radiation", "sample_id": [ "GSM217624", "GSM217626" ], "type": "agent", "id": "GDS2930_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2930", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2930.tab", "compression": "gz" } ], [ [ "GDS2931.tab" ], { "title": "Rheumatoid arthritis and osteoarthritis: synovial fibroblasts", "description": "Comparison of synovial fibroblasts from patients with rheumatoid arthritis (RA) to those with osteoarthritis (OA). RA is characterized by chronic inflammation and destruction of multiple joints. OA is a degenerative disease resulting from the breakdown of cartilage.", "type": "Expression profiling by array", "pubmed_id": [ "17594488", "21474483" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7669", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2931", "description": "rheumatoid arthritis", "sample_id": [ "GSM183695", "GSM185526", "GSM185527", "GSM185528", "GSM185529", "GSM185530" ], "type": "other", "id": "GDS2931_1" }, { "dataset_id": "GDS2931", "description": "osteoarthitis", "sample_id": [ "GSM185531", "GSM185532", "GSM185533", "GSM185534", "GSM185535", "GSM185536" ], "type": "other", "id": "GDS2931_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2931", "version": 1.0, "instances": "12", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2931.tab", "compression": "gz" } ], [ [ "GDS2932.tab" ], { "title": "TGF-beta effect on normal and tumor cell lines: time course", "description": "Analysis of normal lung epithelial HPL1D cells and lung adenocarcinoma A549 cells treated with TGF-beta for up to 12 hours. TGF-beta inhibits growth and promotes apoptosis in normal epithelial cells but acts as a pro-tumor cytokine by promoting tumour angiogenesis, immune-escape, and metastasis.", "type": "Expression profiling by array", "pubmed_id": "17425807", "platform": "GPL3515", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE7436", "order": "none", "update_date": "Sep 16 2009", "subsets": [ { "dataset_id": "GDS2932", "description": "HPL1D", "sample_id": [ "GSM179572", "GSM179584", "GSM179585", "GSM180055", "GSM180058", "GSM180060" ], "type": "cell line", "id": "GDS2932_1" }, { "dataset_id": "GDS2932", "description": "A549", "sample_id": [ "GSM180038", "GSM180039", "GSM180040", "GSM180041", "GSM180042", "GSM180043" ], "type": "cell line", "id": "GDS2932_2" }, { "dataset_id": "GDS2932", "description": "1 h", "sample_id": [ "GSM179572", "GSM179584", "GSM180038", "GSM180039" ], "type": "time", "id": "GDS2932_3" }, { "dataset_id": "GDS2932", "description": "4 h", "sample_id": [ "GSM179585", "GSM180040", "GSM180041", "GSM180055" ], "type": "time", "id": "GDS2932_4" }, { "dataset_id": "GDS2932", "description": "12 h", "sample_id": [ "GSM180042", "GSM180043", "GSM180058", "GSM180060" ], "type": "time", "id": "GDS2932_5" } ], "taxid": "9606", "genes": 15795, "aggregation_function": "mean", "name": "GDS2932", "version": 1.0, "instances": "12", "variables": 15798, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2932.tab", "compression": "gz" } ], [ [ "GDS2933.tab" ], { "title": "Gingival epithelial cell line response to commensal and opportunistic oral microbial species", "description": "Analysis of gingival epithelial HIGK cells co-cultured with the the oral commensal Streptococcus gordonii or the opportunistic commensal Fusobacterium nucleatum. Results provide insight into the mechanisms underlying the adaptation of hosts to commensals.", "type": "Expression profiling by array", "pubmed_id": "17307939", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6927", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2933", "description": "Streptococcus gordonii", "sample_id": [ "GSM159477", "GSM159479", "GSM159480", "GSM159478" ], "type": "infection", "id": "GDS2933_1" }, { "dataset_id": "GDS2933", "description": "Fusobacterium nucleatum", "sample_id": [ "GSM159481", "GSM159482", "GSM159483", "GSM159484" ], "type": "infection", "id": "GDS2933_2" }, { "dataset_id": "GDS2933", "description": "control", "sample_id": [ "GSM159485", "GSM159486", "GSM159487", "GSM159488" ], "type": "infection", "id": "GDS2933_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2933", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2933.tab", "compression": "gz" } ], [ [ "GDS2934.tab" ], { "title": "PPARalpha deficient small intestine response to fasting", "description": "Analysis of PPARalpha deficient small intestines after a 24 hour fast. PPARalpha is a fatty acid-activated transcription factor. Results provide insight into transport function and phase I/II metabolism in the small intestine during fasting and the role of PPARalpha in the response to fasting.", "type": "Expression profiling by array", "pubmed_id": "17683626", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6864", "order": "none", "update_date": "May 06 2008", "subsets": [ { "dataset_id": "GDS2934", "description": "wild type", "sample_id": [ "GSM124308", "GSM124309", "GSM124310", "GSM154798", "GSM154799", "GSM154800" ], "type": "genotype/variation", "id": "GDS2934_1" }, { "dataset_id": "GDS2934", "description": "PPARalpha null", "sample_id": [ "GSM124314", "GSM124315", "GSM124316", "GSM154795", "GSM154796", "GSM154797" ], "type": "genotype/variation", "id": "GDS2934_2" }, { "dataset_id": "GDS2934", "description": "control", "sample_id": [ "GSM124308", "GSM124309", "GSM124310", "GSM124314", "GSM124315", "GSM124316" ], "type": "protocol", "id": "GDS2934_3" }, { "dataset_id": "GDS2934", "description": "fast", "sample_id": [ "GSM154795", "GSM154796", "GSM154797", "GSM154798", "GSM154799", "GSM154800" ], "type": "protocol", "id": "GDS2934_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2934", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2934.tab", "compression": "gz" } ], [ [ "GDS2935.tab" ], { "title": "Allergic contact dermatitis: time course", "description": "Analysis of skin biopsies from nickel-allergic patients whose skins were exposed to nickel, a sensitizing hapten, for up to 96 hours to elicit allergic contact dermatitis (ACD). Results provide insight into molecular mechanisms underlying the pathogenesis of ACD.", "type": "Expression profiling by array", "pubmed_id": "17597826", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE6281", "order": "none", "update_date": "May 06 2008", "subsets": [ { "dataset_id": "GDS2935", "description": "control", "sample_id": [ "GSM144362", "GSM144371", "GSM144376", "GSM144434", "GSM144437", "GSM144441", "GSM144444" ], "type": "time", "id": "GDS2935_1" }, { "dataset_id": "GDS2935", "description": "7 h", "sample_id": [ "GSM144309", "GSM144366", "GSM144368", "GSM144372", "GSM144375", "GSM144435", "GSM144438", "GSM144442", "GSM144445", "GSM144447" ], "type": "time", "id": "GDS2935_2" }, { "dataset_id": "GDS2935", "description": "48 h", "sample_id": [ "GSM144311", "GSM144369", "GSM144373", "GSM144419", "GSM144432", "GSM144439", "GSM144448" ], "type": "time", "id": "GDS2935_3" }, { "dataset_id": "GDS2935", "description": "96 h", "sample_id": [ "GSM144347", "GSM144367", "GSM144370", "GSM144374", "GSM144433", "GSM144436", "GSM144440", "GSM144443", "GSM144446", "GSM144449" ], "type": "time", "id": "GDS2935_4" }, { "dataset_id": "GDS2935", "description": "nickel allergy", "sample_id": [ "GSM144432", "GSM144433", "GSM144434", "GSM144435", "GSM144436", "GSM144437", "GSM144438", "GSM144439", "GSM144440", "GSM144441", "GSM144442", "GSM144443", "GSM144444", "GSM144445", "GSM144446", "GSM144447", "GSM144448", "GSM144449" ], "type": "disease state", "id": "GDS2935_5" }, { "dataset_id": "GDS2935", "description": "non-allergic control", "sample_id": [ "GSM144309", "GSM144311", "GSM144347", "GSM144362", "GSM144366", "GSM144367", "GSM144368", "GSM144369", "GSM144370", "GSM144371", "GSM144372", "GSM144373", "GSM144374", "GSM144375", "GSM144376", "GSM144419" ], "type": "disease state", "id": "GDS2935_6" }, { "dataset_id": "GDS2935", "description": "unexposed", "sample_id": [ "GSM144362", "GSM144371", "GSM144376", "GSM144434", "GSM144437", "GSM144441", "GSM144444" ], "type": "agent", "id": "GDS2935_7" }, { "dataset_id": "GDS2935", "description": "nickel", "sample_id": [ "GSM144309", "GSM144366", "GSM144368", "GSM144372", "GSM144375", "GSM144435", "GSM144438", "GSM144442", "GSM144445", "GSM144447", "GSM144311", "GSM144369", "GSM144373", "GSM144419", "GSM144432", "GSM144439", "GSM144448", "GSM144347", "GSM144367", "GSM144370", "GSM144374", "GSM144433", "GSM144436", "GSM144440", "GSM144443", "GSM144446", "GSM144449" ], "type": "agent", "id": "GDS2935_8" }, { "dataset_id": "GDS2935", "description": "control1", "sample_id": [ "GSM144309", "GSM144311", "GSM144347" ], "type": "individual", "id": "GDS2935_9" }, { "dataset_id": "GDS2935", "description": "control2", "sample_id": [ "GSM144362", "GSM144366", "GSM144367" ], "type": "individual", "id": "GDS2935_10" }, { "dataset_id": "GDS2935", "description": "control3", "sample_id": [ "GSM144368", "GSM144369", "GSM144370" ], "type": "individual", "id": "GDS2935_11" }, { "dataset_id": "GDS2935", "description": "control4", "sample_id": [ "GSM144371", "GSM144372", "GSM144373", "GSM144374" ], "type": "individual", "id": "GDS2935_12" }, { "dataset_id": "GDS2935", "description": "control5", "sample_id": [ "GSM144375", "GSM144376", "GSM144419" ], "type": "individual", "id": "GDS2935_13" }, { "dataset_id": "GDS2935", "description": "patient1", "sample_id": [ "GSM144432", "GSM144433" ], "type": "individual", "id": "GDS2935_14" }, { "dataset_id": "GDS2935", "description": "patient2", "sample_id": [ "GSM144434", "GSM144435" ], "type": "individual", "id": "GDS2935_15" }, { "dataset_id": "GDS2935", "description": "patient3", "sample_id": [ "GSM144436" ], "type": "individual", "id": "GDS2935_16" }, { "dataset_id": "GDS2935", "description": "patient4", "sample_id": [ "GSM144437", "GSM144438", "GSM144439", "GSM144440" ], "type": "individual", "id": "GDS2935_17" }, { "dataset_id": "GDS2935", "description": "patient5", "sample_id": [ "GSM144441", "GSM144442", "GSM144443" ], "type": "individual", "id": "GDS2935_18" }, { "dataset_id": "GDS2935", "description": "patient6", "sample_id": [ "GSM144444", "GSM144445", "GSM144446" ], "type": "individual", "id": "GDS2935_19" }, { "dataset_id": "GDS2935", "description": "patient7", "sample_id": [ "GSM144447", "GSM144448", "GSM144449" ], "type": "individual", "id": "GDS2935_20" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2935", "version": 1.0, "instances": "34", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2935.tab", "compression": "gz" } ], [ [ "GDS2936.tab" ], { "title": "Neural retina leucine zipper deficiency effect on retinas: time course", "description": "Analysis of retinas of mutants lacking the rod photoreceptor-specific neural retina leucine zipper protein (Nrl), at up to 2 months of age. In the absence of Nrl, rods are missing and cones increase in number. Results provide insight into the differences between the two photoreceptor subtypes.", "type": "Expression profiling by array", "pubmed_id": "15163632", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8972", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2936", "description": "2 d", "sample_id": [ "GSM227448", "GSM227449", "GSM227450", "GSM227451", "GSM227452", "GSM227453", "GSM227454", "GSM227455" ], "type": "age", "id": "GDS2936_1" }, { "dataset_id": "GDS2936", "description": "10 d", "sample_id": [ "GSM227456", "GSM227457", "GSM227458", "GSM227459", "GSM227460", "GSM227461", "GSM227462", "GSM227463" ], "type": "age", "id": "GDS2936_2" }, { "dataset_id": "GDS2936", "description": "2 mo", "sample_id": [ "GSM227464", "GSM227465", "GSM227466", "GSM227467", "GSM227468", "GSM227469", "GSM227470", "GSM227471" ], "type": "age", "id": "GDS2936_3" }, { "dataset_id": "GDS2936", "description": "Nrl null", "sample_id": [ "GSM227448", "GSM227449", "GSM227450", "GSM227451", "GSM227456", "GSM227457", "GSM227458", "GSM227459", "GSM227464", "GSM227465", "GSM227466", "GSM227467" ], "type": "genotype/variation", "id": "GDS2936_4" }, { "dataset_id": "GDS2936", "description": "wild type", "sample_id": [ "GSM227452", "GSM227453", "GSM227454", "GSM227455", "GSM227460", "GSM227461", "GSM227462", "GSM227463", "GSM227468", "GSM227469", "GSM227470", "GSM227471" ], "type": "genotype/variation", "id": "GDS2936_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2936", "version": 1.0, "instances": "24", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2936.tab", "compression": "gz" } ], [ [ "GDS2937.tab" ], { "title": "Olfactory marker protein deficiency effect on the olfactory epithelium", "description": "Analysis of heterozygous and homozygous olfactory marker protein (OMP) null olfactory epithelial cells. OMP is expressed only in mature olfactory sensory neurons (OSNs). Results provide insight into the function of OMP.", "type": "Expression profiling by array", "pubmed_id": "17444493", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4927", "order": "none", "update_date": "Sep 10 2007", "subsets": [ { "dataset_id": "GDS2937", "description": "heterozygous null", "sample_id": [ "GSM111140", "GSM111141", "GSM111142" ], "type": "genotype/variation", "id": "GDS2937_1" }, { "dataset_id": "GDS2937", "description": "homozygous null", "sample_id": [ "GSM111137", "GSM111138", "GSM111139" ], "type": "genotype/variation", "id": "GDS2937_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2937", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2937.tab", "compression": "gz" } ], [ [ "GDS2938.tab" ], { "title": "IFN-gamma and IL-1beta effect on thyroid epithelial cells (HG-U133A)", "description": "Analysis of thyroid epithelial cells (TECs) treated with IFN-gamma, IL-1beta, or both. Fas-mediated apoptosis plays a role in the pathogenesis of autoimmune thyroid diseases. TECs are resistant to Fas-mediated apoptosis, but the resistance is overcome by pretreatment with IFN-gamma and IL-1beta.", "type": "Expression profiling by array", "pubmed_id": "17640998", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE5054", "order": "none", "update_date": "May 07 2008", "subsets": [ { "dataset_id": "GDS2938", "description": "subject 1", "sample_id": [ "GSM113926", "GSM113927", "GSM113928", "GSM113929" ], "type": "individual", "id": "GDS2938_1" }, { "dataset_id": "GDS2938", "description": "subject 2", "sample_id": [ "GSM113930", "GSM113931", "GSM113932", "GSM113933" ], "type": "individual", "id": "GDS2938_2" }, { "dataset_id": "GDS2938", "description": "subject 3", "sample_id": [ "GSM113934", "GSM113935", "GSM113936", "GSM113937" ], "type": "individual", "id": "GDS2938_3" }, { "dataset_id": "GDS2938", "description": "control", "sample_id": [ "GSM113926", "GSM113930", "GSM113934" ], "type": "agent", "id": "GDS2938_4" }, { "dataset_id": "GDS2938", "description": "IFN-gamma", "sample_id": [ "GSM113927", "GSM113931", "GSM113935" ], "type": "agent", "id": "GDS2938_5" }, { "dataset_id": "GDS2938", "description": "IL1-beta", "sample_id": [ "GSM113928", "GSM113932", "GSM113936" ], "type": "agent", "id": "GDS2938_6" }, { "dataset_id": "GDS2938", "description": "IFN-gamma and IL1-beta", "sample_id": [ "GSM113929", "GSM113933", "GSM113937" ], "type": "agent", "id": "GDS2938_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2938", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2938.tab", "compression": "gz" } ], [ [ "GDS2939.tab" ], { "title": "IFN-gamma and IL-1beta effect on thyroid epithelial cells (HG-U133A 2.0)", "description": "Analysis of thyroid epithelial cells (TECs) treated with IFN-gamma, IL-1beta, or both. Fas-mediated apoptosis plays a role in the pathogenesis of autoimmune thyroid diseases. TECs are resistant to Fas-mediated apoptosis, but the resistance is overcome by pretreatment with IFN-gamma and IL-1beta.", "type": "Expression profiling by array", "pubmed_id": "17640998", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE5054", "order": "none", "update_date": "May 07 2008", "subsets": [ { "dataset_id": "GDS2939", "description": "subject 4", "sample_id": [ "GSM113938", "GSM113939", "GSM113940", "GSM113941" ], "type": "individual", "id": "GDS2939_1" }, { "dataset_id": "GDS2939", "description": "subject 5", "sample_id": [ "GSM113942", "GSM113943", "GSM113944", "GSM113945" ], "type": "individual", "id": "GDS2939_2" }, { "dataset_id": "GDS2939", "description": "control", "sample_id": [ "GSM113938", "GSM113942" ], "type": "agent", "id": "GDS2939_3" }, { "dataset_id": "GDS2939", "description": "IFN-gamma", "sample_id": [ "GSM113939", "GSM113943" ], "type": "agent", "id": "GDS2939_4" }, { "dataset_id": "GDS2939", "description": "IL1-beta", "sample_id": [ "GSM113940", "GSM113944" ], "type": "agent", "id": "GDS2939_5" }, { "dataset_id": "GDS2939", "description": "IFN-gamma and IL1-beta", "sample_id": [ "GSM113941", "GSM113945" ], "type": "agent", "id": "GDS2939_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS2939", "version": 1.0, "instances": "8", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2939.tab", "compression": "gz" } ], [ [ "GDS294.tab" ], { "title": "Ligand screen in B cells: B-lymphocyte chemoattractant", "description": "Temporal analysis of effects induced by 0.2 uM B-lymphocyte chemoattractant in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE373", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS294", "description": "30 minute", "sample_id": [ "GSM5463", "GSM5464", "GSM5465" ], "type": "time", "id": "GDS294_1" }, { "dataset_id": "GDS294", "description": "60 minute", "sample_id": [ "GSM5466", "GSM5467", "GSM5468" ], "type": "time", "id": "GDS294_2" }, { "dataset_id": "GDS294", "description": "120 minute", "sample_id": [ "GSM5469", "GSM5470" ], "type": "time", "id": "GDS294_3" }, { "dataset_id": "GDS294", "description": "240 minute", "sample_id": [ "GSM5471", "GSM5472", "GSM5473" ], "type": "time", "id": "GDS294_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS294", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS294.tab", "compression": "gz" } ], [ [ "GDS2940.tab" ], { "title": "Dendritic cell response to TGF-beta1: time course", "description": "Analysis of dendritic cells (DCs) at various time points up to 36 hours following treatment with TGF-beta1. DCs derived from CD34+ hematopoietic progenitor cells induced to differentiate in vitro. Results provide insight into the role of TGF-beta1 in DC development.", "type": "Expression profiling by array", "pubmed_id": "17434467", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5178", "order": "none", "update_date": "May 07 2008", "subsets": [ { "dataset_id": "GDS2940", "description": "hematopoietic progenitor cell", "sample_id": [ "GSM116315", "GSM116316", "GSM116317", "GSM116318" ], "type": "cell type", "id": "GDS2940_1" }, { "dataset_id": "GDS2940", "description": "dendritic cell", "sample_id": [ "GSM116323", "GSM116324", "GSM116325", "GSM116326" ], "type": "cell type", "id": "GDS2940_2" }, { "dataset_id": "GDS2940", "description": "untreated", "sample_id": [ "GSM116315", "GSM116323" ], "type": "agent", "id": "GDS2940_3" }, { "dataset_id": "GDS2940", "description": "TGF-beta1", "sample_id": [ "GSM116316", "GSM116317", "GSM116318", "GSM116324", "GSM116325", "GSM116326" ], "type": "agent", "id": "GDS2940_4" }, { "dataset_id": "GDS2940", "description": "control", "sample_id": [ "GSM116315", "GSM116323" ], "type": "time", "id": "GDS2940_5" }, { "dataset_id": "GDS2940", "description": "2 h", "sample_id": [ "GSM116316" ], "type": "time", "id": "GDS2940_6" }, { "dataset_id": "GDS2940", "description": "4 h", "sample_id": [ "GSM116317", "GSM116324" ], "type": "time", "id": "GDS2940_7" }, { "dataset_id": "GDS2940", "description": "16 h", "sample_id": [ "GSM116318", "GSM116325" ], "type": "time", "id": "GDS2940_8" }, { "dataset_id": "GDS2940", "description": "36 h", "sample_id": [ "GSM116326" ], "type": "time", "id": "GDS2940_9" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS2940", "version": 1.0, "instances": "8", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2940.tab", "compression": "gz" } ], [ [ "GDS2941.tab" ], { "title": "Down syndrome: brain", "description": "Analysis of postmortem brains of individuals with Down syndrome. Results provide insight into the pathogenesis of Down syndrome.", "type": "Expression profiling by array", "pubmed_id": "17950572", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE5390", "order": "none", "update_date": "Sep 10 2007", "subsets": [ { "dataset_id": "GDS2941", "description": "control", "sample_id": [ "GSM123271", "GSM123272", "GSM123273", "GSM123274", "GSM123275", "GSM123276", "GSM123277", "GSM123278" ], "type": "disease state", "id": "GDS2941_1" }, { "dataset_id": "GDS2941", "description": "Down syndrome", "sample_id": [ "GSM123264", "GSM123265", "GSM123266", "GSM123267", "GSM123268", "GSM123269", "GSM123270" ], "type": "disease state", "id": "GDS2941_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2941", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2941.tab", "compression": "gz" } ], [ [ "GDS2944.tab" ], { "title": "Trib1-deficient macrophage response to lipopolysaccharide", "description": "Analysis of Trib1-deficient macrophages treated with lipopolysaccharide (LPS). Trib1 is a serine/threonine kinase-like protein. LPS activates toll-like receptors (TLRs) to stimulate host immune responses. Results provide insight into the function of Trib1 in TLR-mediated responses.", "type": "Expression profiling by array", "pubmed_id": "17724128", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8788", "order": "none", "update_date": "Jun 26 2008", "subsets": [ { "dataset_id": "GDS2944", "description": "wild type", "sample_id": [ "GSM218302", "GSM218304" ], "type": "genotype/variation", "id": "GDS2944_1" }, { "dataset_id": "GDS2944", "description": "Trib1-deficient", "sample_id": [ "GSM218303", "GSM218305" ], "type": "genotype/variation", "id": "GDS2944_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2944", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2944.tab", "compression": "gz" } ], [ [ "GDS2945.tab" ], { "title": "Islet amyloid polypeptide effect on pancreatic cell line: time course and dose response", "description": "Analysis of MIN6 pancreatic beta-cells treated for up to 24 hours with various concentrations of human islet amyloid polypeptide (IAPP). IAPP aggregration contributes to the development of islet amyloidosis in type 2 diabetes. IAPP oligomers are associated with pancreatic beta-cell apoptosis.", "type": "Expression profiling by array", "pubmed_id": "17563070", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE2253", "order": "none", "update_date": "Jun 26 2008", "subsets": [ { "dataset_id": "GDS2945", "description": "untreated", "sample_id": [ "GSM41402", "GSM41411" ], "type": "agent", "id": "GDS2945_1" }, { "dataset_id": "GDS2945", "description": "IAPP", "sample_id": [ "GSM41394", "GSM41395", "GSM41396", "GSM41397", "GSM41398", "GSM41399", "GSM41400", "GSM41401", "GSM41403", "GSM41404", "GSM41405", "GSM41406", "GSM41407", "GSM41408", "GSM41409", "GSM41410", "GSM159836", "GSM159839" ], "type": "agent", "id": "GDS2945_2" }, { "dataset_id": "GDS2945", "description": "control", "sample_id": [ "GSM41402", "GSM41411" ], "type": "time", "id": "GDS2945_3" }, { "dataset_id": "GDS2945", "description": "2 h", "sample_id": [ "GSM41394", "GSM41396", "GSM41399", "GSM41403", "GSM41406", "GSM41408" ], "type": "time", "id": "GDS2945_4" }, { "dataset_id": "GDS2945", "description": "12 h", "sample_id": [ "GSM41397", "GSM41400", "GSM41404", "GSM41407", "GSM41409", "GSM159836" ], "type": "time", "id": "GDS2945_5" }, { "dataset_id": "GDS2945", "description": "24 h", "sample_id": [ "GSM41395", "GSM41398", "GSM41401", "GSM41405", "GSM41410", "GSM159839" ], "type": "time", "id": "GDS2945_6" }, { "dataset_id": "GDS2945", "description": "control", "sample_id": [ "GSM41402", "GSM41411" ], "type": "dose", "id": "GDS2945_7" }, { "dataset_id": "GDS2945", "description": "1 uM", "sample_id": [ "GSM41394", "GSM41395", "GSM41403", "GSM41404", "GSM41405", "GSM159836" ], "type": "dose", "id": "GDS2945_8" }, { "dataset_id": "GDS2945", "description": "10 uM", "sample_id": [ "GSM41396", "GSM41397", "GSM41398", "GSM41406", "GSM41407", "GSM159839" ], "type": "dose", "id": "GDS2945_9" }, { "dataset_id": "GDS2945", "description": "20 uM", "sample_id": [ "GSM41399", "GSM41400", "GSM41401", "GSM41408", "GSM41409", "GSM41410" ], "type": "dose", "id": "GDS2945_10" }, { "dataset_id": "GDS2945", "description": "5.5 mM glucose", "sample_id": [ "GSM41403", "GSM41404", "GSM41405", "GSM41406", "GSM41407", "GSM41408", "GSM41409", "GSM41410", "GSM41411", "GSM159839" ], "type": "growth protocol", "id": "GDS2945_11" }, { "dataset_id": "GDS2945", "description": "22.7 mM glucose", "sample_id": [ "GSM41394", "GSM41395", "GSM41396", "GSM41397", "GSM41398", "GSM41399", "GSM41400", "GSM41401", "GSM41402", "GSM159836" ], "type": "growth protocol", "id": "GDS2945_12" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2945", "version": 1.0, "instances": "20", "variables": 13881, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2945.tab", "compression": "gz" } ], [ [ "GDS2946.tab" ], { "title": "Diet-induced obesity model: epididymal fat tissue", "description": "Comparison of epididymal fat tissues from diet-induced obese (DIO) and lean animals. DIO animals were fed a high fat, high sucrose diet to induce obesity.", "type": "Expression profiling by array", "pubmed_id": "18239588", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE8700", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2946", "description": "diet-induced obese", "sample_id": [ "GSM215572", "GSM215573", "GSM215574", "GSM215575", "GSM215576", "GSM215577", "GSM215578" ], "type": "individual", "id": "GDS2946_1" }, { "dataset_id": "GDS2946", "description": "control", "sample_id": [ "GSM215579", "GSM215580", "GSM215581", "GSM215582", "GSM215583", "GSM215584", "GSM215585", "GSM215586" ], "type": "individual", "id": "GDS2946_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2946", "version": 1.0, "instances": "15", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2946.tab", "compression": "gz" } ], [ [ "GDS2947.tab" ], { "title": "Colorectal adenoma formation", "description": "Analysis of colorectal adenomas and normal mucosas from 32 patients. Results provide insight into the molecular mechanisms underlying the formation of colorectal adenomas.", "type": "Expression profiling by array", "pubmed_id": "18171984", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "count", "reference_series": "GSE8671", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2947", "description": "normal mucosa", "sample_id": [ "GSM215051", "GSM215052", "GSM215053", "GSM215054", "GSM215055", "GSM215056", "GSM215057", "GSM215058", "GSM215059", "GSM215060", "GSM215061", "GSM215062", "GSM215063", "GSM215064", "GSM215065", "GSM215066", "GSM215067", "GSM215068", "GSM215069", "GSM215070", "GSM215071", "GSM215072", "GSM215073", "GSM215074", "GSM215075", "GSM215076", "GSM215077", "GSM215078", "GSM215079", "GSM215080", "GSM215081", "GSM215082" ], "type": "disease state", "id": "GDS2947_1" }, { "dataset_id": "GDS2947", "description": "adenoma", "sample_id": [ "GSM215083", "GSM215084", "GSM215085", "GSM215086", "GSM215087", "GSM215088", "GSM215089", "GSM215090", "GSM215091", "GSM215092", "GSM215093", "GSM215094", "GSM215095", "GSM215096", "GSM215097", "GSM215098", "GSM215099", "GSM215100", "GSM215101", "GSM215102", "GSM215103", "GSM215104", "GSM215105", "GSM215106", "GSM215107", "GSM215108", "GSM215109", "GSM215110", "GSM215111", "GSM215112", "GSM215113", "GSM215114" ], "type": "disease state", "id": "GDS2947_2" }, { "dataset_id": "GDS2947", "description": "patient 1", "sample_id": [ "GSM215051", "GSM215083" ], "type": "individual", "id": "GDS2947_3" }, { "dataset_id": "GDS2947", "description": "patient 2", "sample_id": [ "GSM215052", "GSM215084" ], "type": "individual", "id": "GDS2947_4" }, { "dataset_id": "GDS2947", "description": "patient 3", "sample_id": [ "GSM215053", "GSM215085" ], "type": 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"individual", "id": "GDS2947_26" }, { "dataset_id": "GDS2947", "description": "patient 25", "sample_id": [ "GSM215075", "GSM215107" ], "type": "individual", "id": "GDS2947_27" }, { "dataset_id": "GDS2947", "description": "patient 26", "sample_id": [ "GSM215076", "GSM215108" ], "type": "individual", "id": "GDS2947_28" }, { "dataset_id": "GDS2947", "description": "patient 27", "sample_id": [ "GSM215077", "GSM215109" ], "type": "individual", "id": "GDS2947_29" }, { "dataset_id": "GDS2947", "description": "patient 28", "sample_id": [ "GSM215078", "GSM215110" ], "type": "individual", "id": "GDS2947_30" }, { "dataset_id": "GDS2947", "description": "patient 29", "sample_id": [ "GSM215079", "GSM215111" ], "type": "individual", "id": "GDS2947_31" }, { "dataset_id": "GDS2947", "description": "patient 30", "sample_id": [ "GSM215080", "GSM215112" ], "type": "individual", "id": "GDS2947_32" }, { "dataset_id": "GDS2947", "description": "patient 31", "sample_id": [ "GSM215081", "GSM215113" ], "type": 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Results provide insight into the molecular mechanisms underlying the development of the pancreas.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE8070", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2948", "description": "E12.5", "sample_id": [ "GSM199443", "GSM199444" ], "type": "age", "id": "GDS2948_1" }, { "dataset_id": "GDS2948", "description": "E13.5", "sample_id": [ "GSM199445", "GSM199446" ], "type": "age", "id": "GDS2948_2" }, { "dataset_id": "GDS2948", "description": "E14.5", "sample_id": [ "GSM199447", "GSM199448" ], "type": "age", "id": "GDS2948_3" }, { "dataset_id": "GDS2948", "description": "E15.5", "sample_id": [ "GSM199449", "GSM199450" ], "type": "age", "id": "GDS2948_4" }, { "dataset_id": "GDS2948", "description": "E16.5", "sample_id": [ "GSM199451", "GSM199452" ], "type": "age", "id": "GDS2948_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2948", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2948.tab", "compression": "gz" } ], [ [ "GDS2949.tab" ], { "title": "Pancreatic development (MG-U74B)", "description": "Analysis of pancreatic tissues from NMRI animals from embryonic day E12.5 to E16.5. Results provide insight into the molecular mechanisms underlying the development of the pancreas.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE8070", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2949", "description": "E12.5", "sample_id": [ "GSM199453", "GSM199454" ], "type": "age", "id": "GDS2949_1" }, { "dataset_id": "GDS2949", "description": "E13.5", "sample_id": [ "GSM199455", "GSM199456" ], "type": "age", "id": "GDS2949_2" }, { "dataset_id": "GDS2949", "description": "E14.5", "sample_id": [ "GSM199457", "GSM199458" ], "type": "age", "id": "GDS2949_3" }, { "dataset_id": "GDS2949", "description": "E15.5", "sample_id": [ "GSM199459", "GSM199460" ], "type": "age", "id": "GDS2949_4" }, { "dataset_id": "GDS2949", "description": "E16.5", "sample_id": [ "GSM199461", "GSM199462" ], "type": "age", "id": "GDS2949_5" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS2949", "version": 1.0, "instances": "10", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2949.tab", "compression": "gz" } ], [ [ "GDS295.tab" ], { "title": "Ligand screen in B cells: bombesin", "description": "Temporal analysis of effects induced by 1 uM bombesin in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE374", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS295", "description": "30 minute", "sample_id": [ "GSM5474", "GSM5475", "GSM5476" ], "type": "time", "id": "GDS295_1" }, { "dataset_id": "GDS295", "description": "60 minute", "sample_id": [ "GSM5477", "GSM5478", "GSM5479" ], "type": "time", "id": "GDS295_2" }, { "dataset_id": "GDS295", "description": "120 minute", "sample_id": [ "GSM5480", "GSM5481" ], "type": "time", "id": "GDS295_3" }, { "dataset_id": "GDS295", "description": "240 minute", "sample_id": [ "GSM5482", "GSM5483", "GSM5484" ], "type": "time", "id": "GDS295_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS295", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS295.tab", "compression": "gz" } ], [ [ "GDS2950.tab" ], { "title": "Pancreatic development (MG-U74C)", "description": "Analysis of pancreatic tissues from NMRI animals from embryonic day E12.5 to E16.5. Results provide insight into the molecular mechanisms underlying the development of the pancreas.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE8070", "order": "ordered", "update_date": "Sep 11 2007", "subsets": [ { "dataset_id": "GDS2950", "description": "E12.5", "sample_id": [ "GSM199463", "GSM199464" ], "type": "age", "id": "GDS2950_1" }, { "dataset_id": "GDS2950", "description": "E13.5", "sample_id": [ "GSM199465", "GSM199466" ], "type": "age", "id": "GDS2950_2" }, { "dataset_id": "GDS2950", "description": "E14.5", "sample_id": [ "GSM199467", "GSM199468" ], "type": "age", "id": "GDS2950_3" }, { "dataset_id": "GDS2950", "description": "E15.5", "sample_id": [ "GSM199469", "GSM199470" ], "type": "age", "id": "GDS2950_4" }, { "dataset_id": "GDS2950", "description": "E16.5", "sample_id": [ "GSM199471", "GSM199472" ], "type": "age", "id": "GDS2950_5" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS2950", "version": 1.0, "instances": "10", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2950.tab", "compression": "gz" } ], [ [ "GDS2951.tab" ], { "title": "Hypoxia effect on peripheral blood lymphocytes", "description": "Analysis of peripheral blood lymphocytes (PBL) subjected to hypoxia in vitro. PBL were grown at 1% or 20% ambient oxygen.", "type": "Expression profiling by array", "pubmed_id": "19008490", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7833", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2951", "description": "normoxia", "sample_id": [ "GSM190162", "GSM190164", "GSM190166" ], "type": "stress", "id": "GDS2951_1" }, { "dataset_id": "GDS2951", "description": "hypoxia", "sample_id": [ "GSM190163", "GSM190165", "GSM190167" ], "type": "stress", "id": "GDS2951_2" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS2951", "version": 1.0, "instances": "6", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2951.tab", "compression": "gz" } ], [ [ "GDS2952.tab" ], { "title": "Rheumatoid arthritis response to anti-tumor necrosis factor treatment: whole blood", "description": "Analysis of whole blood samples from rheumatoid arthritis (RA) patients following anti-tumor necrosis factor therapy. Results provide insight into the pathogenesis of RA and the molecular mechanisms associated with the response to anti-TNF treatment.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7524", "order": "none", "update_date": "Jun 26 2008", "subsets": [ { "dataset_id": "GDS2952", "description": "normal", "sample_id": [ "GSM119289", "GSM119290" ], "type": "disease state", "id": "GDS2952_1" }, { "dataset_id": "GDS2952", "description": "rheumatoid arthritis", "sample_id": [ "GSM119291", "GSM119292", "GSM119293", "GSM119294" ], "type": "disease state", "id": "GDS2952_2" }, { "dataset_id": "GDS2952", "description": "untreated", "sample_id": [ "GSM119289", "GSM119290" ], "type": "protocol", "id": "GDS2952_3" }, { "dataset_id": "GDS2952", "description": "pre-treatment", "sample_id": [ "GSM119291", "GSM119292" ], "type": "protocol", "id": "GDS2952_4" }, { "dataset_id": "GDS2952", "description": "post-treatment", "sample_id": [ "GSM119293", "GSM119294" ], "type": "protocol", "id": "GDS2952_5" }, { "dataset_id": "GDS2952", "description": "control", "sample_id": [ "GSM119289", "GSM119290" ], "type": "individual", "id": "GDS2952_6" }, { "dataset_id": "GDS2952", "description": "patient 1", "sample_id": [ "GSM119291", "GSM119293" ], "type": "individual", "id": "GDS2952_7" }, { "dataset_id": "GDS2952", "description": "patient 2", "sample_id": [ "GSM119292", "GSM119294" ], "type": "individual", "id": "GDS2952_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2952", "version": 1.0, "instances": "6", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2952.tab", "compression": "gz" } ], [ [ "GDS2953.tab" ], { "title": "KIN10 kinase transcriptional induction effect on mesophyll cells", "description": "Analysis of mesophyll protoplasts following transcriptional induction of the KIN10 (At3g01090) kinase. Results provide insight into the function of KIN10.", "type": "Expression profiling by array", "pubmed_id": "17671505", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8257", "order": "none", "update_date": "Jun 26 2008", "subsets": [ { "dataset_id": "GDS2953", "description": "control", "sample_id": [ "GSM205156", "GSM205160" ], "type": "protocol", "id": "GDS2953_1" }, { "dataset_id": "GDS2953", "description": "KIN10 induction", "sample_id": [ "GSM205159", "GSM205185" ], "type": "protocol", "id": "GDS2953_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS2953", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2953.tab", "compression": "gz" } ], [ [ "GDS2954.tab" ], { "title": "Mycobacterium tuberculosis-derived lipopeptide effect on monocytes and dendritic cells: time course", "description": "Analysis of monocytes (MOs) and MO-derived dendritic cells (DCs) for up to 24 hours following Mycobacterium tuberculosis-derived lipopeptide treatment. Toll-like receptor activation by bacterial lipopeptides reduced the viability of M. tuberculosis in MOs and macrophages but not MO-derived DCs.", "type": "Expression profiling by array", "pubmed_id": "16497887", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "count", "reference_series": "GSE8921", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2954", "description": "monocyte", "sample_id": [ "GSM209847", "GSM225347", "GSM225348", "GSM225349", "GSM225350", "GSM225351", "GSM225353", "GSM225354", "GSM225355", "GSM225356", "GSM225357", "GSM225358", "GSM225360", "GSM225361", "GSM225364", "GSM225365", "GSM225366", "GSM225367", "GSM225368", "GSM225369", "GSM225370", "GSM225372", "GSM225373", "GSM225374", "GSM225376", "GSM225377", "GSM225378", "GSM225380", "GSM225645", "GSM225649", "GSM225651", "GSM225653", "GSM225654", "GSM225655", "GSM225656", "GSM225657", "GSM225658", "GSM225659", "GSM225660", "GSM225661", "GSM225663", "GSM225712" ], "type": "cell type", "id": "GDS2954_1" }, { "dataset_id": "GDS2954", "description": "dendritic cell", "sample_id": [ "GSM225860", "GSM225867", "GSM225871", "GSM225875", "GSM225878", "GSM225881", "GSM225885", "GSM225887" ], "type": "cell type", "id": "GDS2954_2" }, { "dataset_id": "GDS2954", "description": "control", "sample_id": [ "GSM209847", "GSM225347", "GSM225349", "GSM225350", "GSM225353", "GSM225354", "GSM225356", "GSM225357", "GSM225360", "GSM225364", "GSM225366", "GSM225367", "GSM225368", "GSM225370", "GSM225373", "GSM225374", "GSM225377", "GSM225645", "GSM225651", "GSM225653", "GSM225656", "GSM225657", "GSM225658", "GSM225660", "GSM225663", "GSM225712", "GSM225860", "GSM225875", "GSM225878", "GSM225885" ], "type": "agent", "id": "GDS2954_3" }, { "dataset_id": "GDS2954", "description": "lipopeptide", "sample_id": [ "GSM225348", "GSM225351", "GSM225355", "GSM225358", "GSM225361", "GSM225365", "GSM225369", "GSM225372", "GSM225376", "GSM225378", "GSM225380", "GSM225649", "GSM225654", "GSM225655", "GSM225659", "GSM225661", "GSM225867", "GSM225871", "GSM225881", "GSM225887" ], "type": "agent", "id": "GDS2954_4" }, { "dataset_id": "GDS2954", "description": "0 h", "sample_id": [ "GSM209847", "GSM225349", "GSM225353", "GSM225356", "GSM225364", "GSM225367", "GSM225370", "GSM225374", "GSM225653", "GSM225658" ], "type": "time", "id": "GDS2954_5" }, { "dataset_id": "GDS2954", "description": "3 h", "sample_id": [ "GSM225350", "GSM225351", "GSM225357", "GSM225358", "GSM225368", "GSM225369", "GSM225380", "GSM225645" ], "type": "time", "id": "GDS2954_6" }, { "dataset_id": "GDS2954", "description": "6 h", "sample_id": [ "GSM225354", "GSM225355", "GSM225360", "GSM225361", "GSM225649", "GSM225651", "GSM225655", "GSM225657" ], "type": "time", "id": "GDS2954_7" }, { "dataset_id": "GDS2954", "description": "12 h", "sample_id": [ "GSM225347", "GSM225348", "GSM225376", "GSM225377", "GSM225654", "GSM225656", "GSM225659", "GSM225660", "GSM225860", "GSM225867", "GSM225871", "GSM225875", "GSM225878", "GSM225881", "GSM225885", "GSM225887" ], "type": "time", "id": "GDS2954_8" }, { "dataset_id": "GDS2954", "description": "24 h", "sample_id": [ "GSM225365", "GSM225366", "GSM225372", "GSM225373", "GSM225378", "GSM225661", "GSM225663", "GSM225712" ], "type": "time", "id": "GDS2954_9" }, { "dataset_id": "GDS2954", "description": "donor 1", "sample_id": [ "GSM225374", "GSM225376", "GSM225377", "GSM225378", "GSM225380", "GSM225645", "GSM225649", "GSM225651", "GSM225712" ], "type": "individual", "id": "GDS2954_10" }, { "dataset_id": "GDS2954", "description": "donor 2", "sample_id": [ "GSM225349", "GSM225350", "GSM225351" ], "type": "individual", "id": "GDS2954_11" }, { "dataset_id": "GDS2954", "description": "donor 3", "sample_id": [ "GSM225367", "GSM225368", "GSM225369" ], "type": "individual", "id": "GDS2954_12" }, { "dataset_id": "GDS2954", "description": "donor 4", "sample_id": [ "GSM225356", "GSM225357", "GSM225358" ], "type": "individual", "id": "GDS2954_13" }, { "dataset_id": "GDS2954", "description": "donor 5", "sample_id": [ "GSM225353", "GSM225354", "GSM225355" ], "type": "individual", "id": "GDS2954_14" }, { "dataset_id": "GDS2954", "description": "donor 6", "sample_id": [ "GSM225360", "GSM225361" ], "type": "individual", "id": "GDS2954_15" }, { "dataset_id": "GDS2954", "description": "donor 7", "sample_id": [ "GSM225653", "GSM225654", "GSM225655", "GSM225656", "GSM225657" ], "type": "individual", "id": "GDS2954_16" }, { "dataset_id": "GDS2954", "description": "donor 8", "sample_id": [ "GSM209847", "GSM225347", "GSM225348" ], "type": "individual", "id": "GDS2954_17" }, { "dataset_id": "GDS2954", "description": "donor 9", "sample_id": [ "GSM225658", "GSM225659", "GSM225660", "GSM225661", "GSM225663" ], "type": "individual", "id": "GDS2954_18" }, { "dataset_id": "GDS2954", "description": "donor 10", "sample_id": [ "GSM225370", "GSM225372", "GSM225373" ], "type": "individual", "id": "GDS2954_19" }, { "dataset_id": "GDS2954", "description": "donor 11", "sample_id": [ "GSM225364", "GSM225365", "GSM225366" ], "type": "individual", "id": "GDS2954_20" }, { "dataset_id": "GDS2954", "description": "donor 12", "sample_id": [ "GSM225860", "GSM225867" ], "type": "individual", "id": "GDS2954_21" }, { "dataset_id": "GDS2954", "description": "donor 13", "sample_id": [ "GSM225871", "GSM225875" ], "type": "individual", "id": "GDS2954_22" }, { "dataset_id": "GDS2954", "description": "donor 14", "sample_id": [ "GSM225878", "GSM225881" ], "type": "individual", "id": "GDS2954_23" }, { "dataset_id": "GDS2954", "description": "donor 15", "sample_id": [ "GSM225885", "GSM225887" ], "type": "individual", "id": "GDS2954_24" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2954", "version": 1.0, "instances": "50", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2954.tab", "compression": "gz" } ], [ [ "GDS2955.tab" ], { "title": "Estrogen-related receptor beta mutation effect on the stria vascularis", "description": "Analysis of the stria vascularis (SV) of estrogen-related receptor beta mutants (ERR-beta; NR3B2). Results provide insight into the role of ERR-beta in the development of endolymph-producing cells of the inner ear.", "type": "Expression profiling by array", "pubmed_id": "17765677", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE8434", "order": "none", "update_date": "Jun 26 2008", "subsets": [ { "dataset_id": "GDS2955", "description": "wild type", "sample_id": [ "GSM209600", "GSM209601", "GSM209602" ], "type": "genotype/variation", "id": "GDS2955_1" }, { "dataset_id": "GDS2955", "description": "ERR-beta mutant", "sample_id": [ "GSM209603", "GSM209604", "GSM209605" ], "type": "genotype/variation", "id": "GDS2955_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2955", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2955.tab", "compression": "gz" } ], [ [ "GDS2956.tab" ], { "title": "Roux-en-Y gastric bypass model", "description": "Analysis of subcutaneous abdominal fat and hypothalami of male Sprague-Dawleys that lost or regained weight after Roux-en-Y gastric bypass (RYGB) surgery. Obesity induced by diet prior to RYBG. Results provide insight into the mechanisms contributing to successful weight loss following RYBG.", "type": "Expression profiling by array", "pubmed_id": "17626126", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE8314", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2956", "description": "subcutaneous abdominal fat", "sample_id": [ "GSM206022", "GSM206024", "GSM206027", "GSM206031", "GSM206036", "GSM206040", "GSM206043", "GSM206044", "GSM206045" ], "type": "tissue", "id": "GDS2956_1" }, { "dataset_id": "GDS2956", "description": "hypothalamus", "sample_id": [ "GSM206023", "GSM206025", "GSM206028", "GSM206034", "GSM206038", "GSM206041", "GSM206046", "GSM206049", "GSM206050" ], "type": "tissue", "id": "GDS2956_2" }, { "dataset_id": "GDS2956", "description": "weight regained", "sample_id": [ "GSM206031", "GSM206034", "GSM206036", "GSM206038", "GSM206040", "GSM206041" ], "type": "disease state", "id": "GDS2956_3" }, { "dataset_id": "GDS2956", "description": "weight lost", "sample_id": [ "GSM206043", "GSM206044", "GSM206045", "GSM206046", "GSM206049", "GSM206050" ], "type": "disease state", "id": "GDS2956_4" }, { "dataset_id": "GDS2956", "description": "control", "sample_id": [ "GSM206022", "GSM206023", "GSM206024", "GSM206025", "GSM206027", "GSM206028" ], "type": "disease state", "id": "GDS2956_5" }, { "dataset_id": "GDS2956", "description": "sham", "sample_id": [ "GSM206022", "GSM206023", "GSM206024", "GSM206025", "GSM206027", "GSM206028" ], "type": "protocol", "id": "GDS2956_6" }, { "dataset_id": "GDS2956", "description": "RYGB surgery", "sample_id": [ "GSM206043", "GSM206044", "GSM206045", "GSM206046", "GSM206049", "GSM206050", "GSM206031", "GSM206034", "GSM206036", "GSM206038", "GSM206040", "GSM206041" ], "type": "protocol", "id": "GDS2956_7" }, { "dataset_id": "GDS2956", "description": "pair fed 1", "sample_id": [ "GSM206022", "GSM206023", "GSM206031", "GSM206034", "GSM206043", "GSM206046" ], "type": "other", "id": "GDS2956_8" }, { "dataset_id": "GDS2956", "description": "pair fed 2", "sample_id": [ "GSM206024", "GSM206025", "GSM206036", "GSM206038", "GSM206044", "GSM206049" ], "type": "other", "id": "GDS2956_9" }, { "dataset_id": "GDS2956", "description": "pair fed 3", "sample_id": [ "GSM206027", "GSM206028", "GSM206040", "GSM206041", "GSM206045", "GSM206050" ], "type": "other", "id": "GDS2956_10" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2956", "version": 1.0, "instances": "18", "variables": 24217, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2956.tab", "compression": "gz" } ], [ [ "GDS2957.tab" ], { "title": "Resting and activated natural killer cells", "description": "Analysis of resting and activated natural killer (NK) cells. Activated NK cells can use the granule exocytosis pathway to kill target cells upon recognition, resting NK cells are minimally cytotoxic. Results provide insight into the molecular basis of the cytotoxicity displayed by NK cells.", "type": "Expression profiling by array", "pubmed_id": "17540585", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7764", "order": "none", "update_date": "Jun 27 2008", "subsets": [ { "dataset_id": "GDS2957", "description": "resting bulk splenocytes", "sample_id": [ "GSM188007", "GSM188181", "GSM188182", "GSM188183" ], "type": "cell type", "id": "GDS2957_1" }, { "dataset_id": "GDS2957", "description": "resting NK cells", "sample_id": [ "GSM188001", "GSM188003", "GSM188004" ], "type": "cell type", "id": "GDS2957_2" }, { "dataset_id": "GDS2957", "description": "activated NK cells", "sample_id": [ "GSM188002", "GSM188005", "GSM188006" ], "type": "cell type", "id": "GDS2957_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2957", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2957.tab", "compression": "gz" } ], [ [ "GDS2958.tab" ], { "title": "Tumor suppressor PTEN depletion effect on various cell lines", "description": "Analysis of A431, HCC827, and SKBR-3 carcinoma cell lines depleted for the tumor suppressor PTEN. Inactivation of PTEN is a common genetic lesion in cancer. Results provide insight into the molecular basis of the oncogenic phenotypes resulting from PTEN deficiency.", "type": "Expression profiling by array", "pubmed_id": "17560336", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7562", "order": "none", "update_date": "Sep 12 2007", "subsets": [ { "dataset_id": "GDS2958", "description": "A431", "sample_id": [ "GSM183432", "GSM183433", "GSM183434", "GSM183435" ], "type": "cell line", "id": "GDS2958_1" }, { "dataset_id": "GDS2958", "description": "HCC827", "sample_id": [ "GSM183436", "GSM183437", "GSM183438", "GSM183439" ], "type": "cell line", "id": "GDS2958_2" }, { "dataset_id": "GDS2958", "description": "SKBR-3", "sample_id": [ "GSM183440", "GSM183441", "GSM183442", "GSM183443" ], "type": "cell line", "id": "GDS2958_3" }, { "dataset_id": "GDS2958", "description": "epidermoid carcinoma", "sample_id": [ "GSM183432", "GSM183433", "GSM183434", "GSM183435" ], "type": "cell type", "id": "GDS2958_4" }, { "dataset_id": "GDS2958", "description": "non-small cell lung carcinoma", "sample_id": [ "GSM183436", "GSM183437", "GSM183438", "GSM183439" ], "type": "cell type", "id": "GDS2958_5" }, { "dataset_id": "GDS2958", "description": "mammary adenocarcinoma", "sample_id": [ "GSM183440", "GSM183441", "GSM183442", "GSM183443" ], "type": "cell type", "id": "GDS2958_6" }, { "dataset_id": "GDS2958", "description": "control", "sample_id": [ "GSM183432", "GSM183433", "GSM183436", "GSM183437", "GSM183440", "GSM183441" ], "type": "protocol", "id": "GDS2958_7" }, { "dataset_id": "GDS2958", "description": "PTEN knockdown", "sample_id": [ "GSM183434", "GSM183435", "GSM183438", "GSM183439", "GSM183442", "GSM183443" ], "type": "protocol", "id": "GDS2958_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2958", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2958.tab", "compression": "gz" } ], [ [ "GDS2959.tab" ], { "title": "Granulocyte colony-stimulating factor mobilized leukocytes", "description": "Analysis of leukocytes from individuals before and after the administration of granulocyte colony-stimulating factor (G-CSF). G-CSF is used to boost granulocyte counts in immunocompromised patients. Results provide insight into the effect of G-CSF on the immune system.", "type": "Expression profiling by array", "pubmed_id": "17761290", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7400", "order": "none", "update_date": "Sep 12 2007", "subsets": [ { "dataset_id": "GDS2959", "description": "untreated", "sample_id": [ "GSM178549", "GSM178550", "GSM178551", "GSM178552", "GSM178553" ], "type": "agent", "id": "GDS2959_1" }, { "dataset_id": "GDS2959", "description": "G-CSF", "sample_id": [ "GSM178554", "GSM178555", "GSM178556", "GSM178557", "GSM178558" ], "type": "agent", "id": "GDS2959_2" }, { "dataset_id": "GDS2959", "description": "subject A", "sample_id": [ "GSM178549", "GSM178554" ], "type": "individual", "id": "GDS2959_3" }, { "dataset_id": "GDS2959", "description": "subject B", "sample_id": [ "GSM178550", "GSM178555" ], "type": "individual", "id": "GDS2959_4" }, { "dataset_id": "GDS2959", "description": "subject C", "sample_id": [ "GSM178551", "GSM178556" ], "type": "individual", "id": "GDS2959_5" }, { "dataset_id": "GDS2959", "description": "subject D", "sample_id": [ "GSM178552", "GSM178557" ], "type": "individual", "id": "GDS2959_6" }, { "dataset_id": "GDS2959", "description": "subject E", "sample_id": [ "GSM178553", "GSM178558" ], "type": "individual", "id": "GDS2959_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2959", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2959.tab", "compression": "gz" } ], [ [ "GDS296.tab" ], { "title": "Ligand screen in B cells: CD27", "description": "Temporal analysis of effects induced by CD27 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE375", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS296", "description": "30 minute", "sample_id": [ "GSM5485", "GSM5486", "GSM5487" ], "type": "time", "id": "GDS296_1" }, { "dataset_id": "GDS296", "description": "60 minute", "sample_id": [ "GSM5488", "GSM5489", "GSM5490" ], "type": "time", "id": "GDS296_2" }, { "dataset_id": "GDS296", "description": "120 minute", "sample_id": [ "GSM5497", "GSM5498", "GSM5499" ], "type": "time", "id": "GDS296_3" }, { "dataset_id": "GDS296", "description": "240 minute", "sample_id": [ "GSM5500", "GSM5501", "GSM5502" ], "type": "time", "id": "GDS296_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS296", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS296.tab", "compression": "gz" } ], [ [ "GDS2960.tab" ], { "title": "Marfan syndrome: cultured skin fibroblasts", "description": "Analysis of cultured skin fibroblasts prepared from patients with Marfan syndrome (MFS). MFS is a heritable connective tissue disorder caused by mutations in the fibrillin-1 gene. Results provide insight into the molecular pathogenesis of MFS.", "type": "Expression profiling by array", "pubmed_id": "17850668", "platform": "GPL538", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4132", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "101", "value_type": "transformed count", "reference_series": "GSE8759", "order": "none", "update_date": "Sep 17 2007", "subsets": [ { "dataset_id": "GDS2960", "description": "control", "sample_id": [ "GSM217644", "GSM217645", "GSM217646", "GSM217647", "GSM217648", "GSM217649", "GSM217650", "GSM217651", "GSM217652", "GSM217653", "GSM217654", "GSM217655", "GSM217656", "GSM217657", "GSM217658", "GSM217659", "GSM217660", "GSM217661", "GSM217662", "GSM217663", "GSM217664", "GSM217665", "GSM217666", "GSM217667", "GSM217668", "GSM217669", "GSM217670", "GSM217671", "GSM217672", "GSM217673", "GSM217674", "GSM217675", "GSM217676", "GSM217677", "GSM217678", "GSM217679", "GSM217680", "GSM217681", "GSM217682", "GSM217683", "GSM217684" ], "type": "disease state", "id": "GDS2960_1" }, { "dataset_id": "GDS2960", "description": "Marfan syndrome", "sample_id": [ "GSM217685", "GSM217686", "GSM217687", "GSM217688", "GSM217689", "GSM217690", "GSM217691", "GSM217692", "GSM217693", "GSM217694", "GSM217695", "GSM217696", "GSM217697", "GSM217698", "GSM217699", "GSM217700", "GSM217701", "GSM217702", "GSM217703", "GSM217704", "GSM217705", "GSM217706", "GSM217707", "GSM217708", "GSM217709", "GSM217710", "GSM217711", "GSM217712", "GSM217713", "GSM217714", "GSM217715", "GSM217716", "GSM217717", "GSM217718", "GSM217719", "GSM217720", "GSM217721", "GSM217722", "GSM217723", "GSM217724", "GSM217725", "GSM217726", "GSM217727", "GSM217728", "GSM217729", "GSM217730", "GSM217731", "GSM217732", "GSM217733", "GSM217734", "GSM217735", "GSM217736", "GSM217737", "GSM217738", "GSM217739", "GSM217740", "GSM217741", "GSM217742", "GSM217743", "GSM217744" ], "type": "disease state", "id": "GDS2960_2" } ], "taxid": "9606", "genes": 4069, "aggregation_function": "mean", "name": "GDS2960", "version": 1.0, "instances": "101", "variables": 4071, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2960.tab", "compression": "gz" } ], [ [ "GDS2961.tab" ], { "title": "Male and female thymi response to aging and caloric restriction (A)", "description": "Analysis of thymi from 17 to 743 day-old males and females on a calorie-restricted or ad libitum diet. 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and its vincristine-resistant derivative. Vincristine is a chemotherapeutic agent used for the treatment of cancer. Results provide insight into the molecular mechanisms underlying the emergence of multidrug resistance.", "type": "Expression profiling by array", "pubmed_id": "17726699", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7556", "order": "none", "update_date": "Sep 18 2007", "subsets": [ { "dataset_id": "GDS2963", "description": "vincristine-sensitive", "sample_id": [ "GSM183338", "GSM183341" ], "type": "cell line", "id": "GDS2963_1" }, { "dataset_id": "GDS2963", "description": "vincristine-resistant", "sample_id": [ "GSM183342", "GSM183344" ], "type": "cell line", "id": "GDS2963_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2963", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2963.tab", "compression": "gz" } ], [ [ "GDS2965.tab" ], { "title": "Embryonic heart response to retinoic acid and dioxin: time course", "description": "Analysis of hearts from embryos treated for up to 12 hours with retinoic acid (RA) or 2,3,7,8 tetrachlorodibenzo-p-dioxin (TCDD). Zebrafish embryos treated with RA or TCDD develop cardiac malformation and heart failure.", "type": "Expression profiling by array", "pubmed_id": "18230668", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE9020", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS2965", "description": "control for RA", "sample_id": [ "GSM228874", "GSM228875", "GSM228876", "GSM228880", "GSM228881", "GSM228882", "GSM228886", "GSM228887", "GSM228888", "GSM228892", "GSM228893", "GSM228894" ], "type": "agent", "id": "GDS2965_1" }, { "dataset_id": "GDS2965", "description": "RA", "sample_id": [ "GSM228871", "GSM228872", "GSM228873", "GSM228877", "GSM228878", "GSM228879", "GSM228883", "GSM228884", "GSM228885", "GSM228889", "GSM228890", "GSM228891" ], "type": "agent", "id": "GDS2965_2" }, { "dataset_id": "GDS2965", "description": "control for TCDD", "sample_id": [ "GSM228898", "GSM228899", "GSM228900", "GSM228905", "GSM228906", "GSM228907", "GSM228911", "GSM228912", "GSM228913", "GSM228917", "GSM228918", "GSM228919" ], "type": "agent", "id": "GDS2965_3" }, { "dataset_id": "GDS2965", "description": "1 h", "sample_id": [ "GSM228871", "GSM228872", "GSM228873", "GSM228874", "GSM228875", "GSM228876", "GSM228895", "GSM228896", "GSM228897", "GSM228898", "GSM228899", "GSM228900" ], "type": "time", "id": "GDS2965_4" }, { "dataset_id": "GDS2965", "description": "2 h", "sample_id": [ "GSM228877", "GSM228878", "GSM228879", "GSM228880", "GSM228881", "GSM228882", "GSM228901", "GSM228903", "GSM228904", "GSM228905", "GSM228906", "GSM228907" ], "type": "time", "id": "GDS2965_5" }, { "dataset_id": "GDS2965", "description": "4 h", "sample_id": [ "GSM228883", "GSM228884", "GSM228885", "GSM228886", "GSM228887", "GSM228888", "GSM228908", "GSM228909", "GSM228910", "GSM228911", "GSM228912", "GSM228913" ], "type": "time", "id": "GDS2965_6" }, { "dataset_id": "GDS2965", "description": "12 h", "sample_id": [ "GSM228889", "GSM228890", "GSM228891", "GSM228892", "GSM228893", "GSM228894", "GSM228914", "GSM228915", "GSM228916", "GSM228917", "GSM228918", "GSM228919" ], "type": "time", "id": "GDS2965_7" }, { "dataset_id": "GDS2965", "description": "TCDD", "sample_id": [ "GSM228895", "GSM228896", "GSM228897", "GSM228901", "GSM228903", "GSM228904", "GSM228908", "GSM228909", "GSM228910", "GSM228914", "GSM228915", "GSM228916" ], "type": "agent", "id": "GDS2965_8" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS2965", "version": 1.0, "instances": "48", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2965.tab", "compression": "gz" } ], [ [ "GDS2966.tab" ], { "title": "Resveratrol effect on lung carcinoma cell line", "description": "Analysis of lung carcinoma A549 cells treated with resveratrol. Resveratrol is a phytoestrogen found in red wine. Results provide insight into protective effect of resveratrol against lung cancer.", "type": "Expression profiling by array", "pubmed_id": "18089832", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9008", "order": "none", "update_date": "Jun 30 2008", "subsets": [ { "dataset_id": "GDS2966", "description": "control", "sample_id": [ "GSM228717" ], "type": "agent", "id": "GDS2966_1" }, { "dataset_id": "GDS2966", "description": "resveratrol", "sample_id": [ "GSM228718", "GSM228719", "GSM228720" ], "type": "agent", "id": "GDS2966_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2966", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2966.tab", "compression": "gz" } ], [ [ "GDS2967.tab" ], { "title": "Bar1-deficient mating type a cells response to alpha mating factor: time course and dose response", "description": "Analysis of mating response of W303 bar1delta a-type cells treated for up to 150 minutes with various concentrations of alpha mating factor pheromone. BAR1 encodes an aspartyl protease that cleaves the alpha factor to inactivate it. The alpha factor induces the cell cycle arrest during mating.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL5823", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6206", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "33", "value_type": "log2 ratio", "reference_series": "GSE8982", "order": "none", "update_date": "Sep 16 2009", "subsets": [ { "dataset_id": "GDS2967", "description": "0.06 nM", "sample_id": [ "GSM227656", "GSM227657", "GSM227658", "GSM227659", "GSM227660", "GSM227661", "GSM227662" ], "type": "dose", "id": "GDS2967_1" }, { "dataset_id": "GDS2967", "description": "0.2 nM", "sample_id": [ "GSM227663", "GSM227664", "GSM227665", "GSM227666", "GSM227667", "GSM227668" ], "type": "dose", "id": "GDS2967_2" }, { "dataset_id": "GDS2967", "description": "0.6 nM", "sample_id": [ "GSM227669", "GSM227670", "GSM227671", "GSM227672", "GSM227673" ], "type": "dose", "id": "GDS2967_3" }, { "dataset_id": "GDS2967", "description": "6 nM", "sample_id": [ "GSM227674", "GSM227675", "GSM227676", "GSM227677", "GSM227678" ], "type": "dose", "id": "GDS2967_4" }, { "dataset_id": "GDS2967", "description": "60 nM", "sample_id": [ "GSM227679", "GSM227680", "GSM227681", "GSM227682", "GSM227683" ], "type": "dose", "id": "GDS2967_5" }, { "dataset_id": "GDS2967", "description": "600 nM", "sample_id": [ "GSM227684", "GSM227685", "GSM227686", "GSM227687", "GSM227688" ], "type": "dose", "id": "GDS2967_6" }, { "dataset_id": "GDS2967", "description": "5 min", "sample_id": [ "GSM227656", "GSM227663", "GSM227669", "GSM227674", "GSM227679", "GSM227684" ], "type": "time", "id": "GDS2967_7" }, { "dataset_id": "GDS2967", "description": "15 min", "sample_id": [ "GSM227657", "GSM227664", "GSM227670", "GSM227675", "GSM227680" ], "type": "time", "id": "GDS2967_8" }, { "dataset_id": "GDS2967", "description": "30 min", "sample_id": [ "GSM227658", "GSM227665", "GSM227671", "GSM227676", "GSM227681", "GSM227685" ], "type": "time", "id": "GDS2967_9" }, { "dataset_id": "GDS2967", "description": "60 min", "sample_id": [ "GSM227659", "GSM227666", "GSM227672", "GSM227677", "GSM227682", "GSM227686" ], "type": "time", "id": "GDS2967_10" }, { "dataset_id": "GDS2967", "description": "90 min", "sample_id": [ "GSM227660", "GSM227667", "GSM227673", "GSM227678", "GSM227683", "GSM227687" ], "type": "time", "id": "GDS2967_11" }, { "dataset_id": "GDS2967", "description": "120 min", "sample_id": [ "GSM227661", "GSM227668", "GSM227688" ], "type": "time", "id": "GDS2967_12" }, { "dataset_id": "GDS2967", "description": "150 min", "sample_id": [ "GSM227662" ], "type": "time", "id": "GDS2967_13" } ], "taxid": "4932", "genes": 6187, "aggregation_function": "mean", "name": "GDS2967", "version": 1.0, "instances": "33", "variables": 6190, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2967.tab", "compression": "gz" } ], [ [ "GDS2968.tab" ], { "title": "Large intestine lacking intestinal flora", "description": "Analysis of large intestines of animals lacking intestinal flora. Results provide insight into the role of the intestinal flora in the development and function of the host immune system in the large intestine.", "type": "Expression profiling by array", "pubmed_id": "18439305", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8006", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2968", "description": "with intestinal flora", "sample_id": [ "GSM197764", "GSM197765", "GSM197766" ], "type": "other", "id": "GDS2968_1" }, { "dataset_id": "GDS2968", "description": "without intestinal flora", "sample_id": [ "GSM197761", "GSM197762", "GSM197763" ], "type": "other", "id": "GDS2968_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2968", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2968.tab", "compression": "gz" } ], [ [ "GDS2969.tab" ], { "title": "Carbon dioxide effect on fermenting yeast: dose response", "description": "Analysis of chemostat cultures sparged with 79% or 100% carbon dioxide (CO2). During fermentation and ethanol production, CO2 is produced, saturating the fermentative broth. Results provide insight into the mechanisms underlying CO2 stress.", "type": "Expression profiling by array", "pubmed_id": "15780657", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE8900", "order": "none", "update_date": "May 14 2015", "subsets": [ { "dataset_id": "GDS2969", "description": "Aerobic condition", "sample_id": [ "GSM29912", "GSM29914", "GSM29917", "GSM29920", "GSM29921", "GSM29922", "GSM225515", "GSM225516", "GSM225517", "GSM225519", "GSM225520", "GSM225521" ], "type": "growth protocol", "id": "GDS2969_1" }, { "dataset_id": "GDS2969", "description": "Anaerobic condition", "sample_id": [ "GSM29934", "GSM29936", "GSM29937", "GSM225469", "GSM225482", "GSM225514" ], "type": "growth protocol", "id": "GDS2969_2" }, { "dataset_id": "GDS2969", "description": "0% CO2", "sample_id": [ "GSM29934", "GSM29936", "GSM29937" ], "type": "dose", "id": "GDS2969_3" }, { "dataset_id": "GDS2969", "description": "0.05%CO2", "sample_id": [ "GSM29912", "GSM29914", "GSM29917", "GSM29920", "GSM29921", "GSM29922" ], "type": "dose", "id": "GDS2969_4" }, { "dataset_id": "GDS2969", "description": "79% CO2", "sample_id": [ "GSM225515", "GSM225516", "GSM225517", "GSM225519", "GSM225520", "GSM225521" ], "type": "dose", "id": "GDS2969_5" }, { "dataset_id": "GDS2969", "description": "100% CO2", "sample_id": [ "GSM225469", "GSM225482", "GSM225514" ], "type": "dose", "id": "GDS2969_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2969", "version": 1.0, "instances": "18", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2969.tab", "compression": "gz" } ], [ [ "GDS297.tab" ], { "title": "Ligand screen in B cells: CD40", "description": "Temporal analysis of effects induced by 65 nM CD40 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE376", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS297", "description": "30 minute", "sample_id": [ "GSM5491", "GSM5492", "GSM5493" ], "type": "time", "id": "GDS297_1" }, { "dataset_id": "GDS297", "description": "60 minute", "sample_id": [ "GSM5494", "GSM5495", "GSM5496" ], "type": "time", "id": "GDS297_2" }, { "dataset_id": "GDS297", "description": "120 minute", "sample_id": [ "GSM5503", "GSM5504", "GSM5505" ], "type": "time", "id": "GDS297_3" }, { "dataset_id": "GDS297", "description": "240 minute", "sample_id": [ "GSM5506", "GSM5507", "GSM5508" ], "type": "time", "id": "GDS297_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS297", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS297.tab", "compression": "gz" } ], [ [ "GDS2970.tab" ], { "title": "Polyamide-chlorambucil conjugate 1R-Chl effect on leukemia cell line", "description": "Analysis of leukemia K562 cells treated with the polyamide-chlorambucil conjugate 1R-Chl. 1R-Chl down-regulates transcription of the human histone H4c gene and inhibits the growth of several cancer cell lines in vitro.", "type": "Expression profiling by array", "pubmed_id": "18413791", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8832", "order": "none", "update_date": "Jul 01 2008", "subsets": [ { "dataset_id": "GDS2970", "description": "control", "sample_id": [ "GSM219392", "GSM219393", "GSM219394" ], "type": "agent", "id": "GDS2970_1" }, { "dataset_id": "GDS2970", "description": "1R-Chl", "sample_id": [ "GSM219395", "GSM219396", "GSM219397" ], "type": "agent", "id": "GDS2970_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2970", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2970.tab", "compression": "gz" } ], [ [ "GDS2971.tab" ], { "title": "Hemiasterlin analog HTI-286 effect on docetaxel-resistant prostate cancer cell line", "description": "Analysis of prostate cancer LNCaP cells treated with the chemotherapeutic agent docetaxel or the hemiasterlin analog HTI-286. Like docetaxel, HTI-286 disrupts microtubule dynamics. But unlike docetaxel, HT-286 exhibits reduced multidrug resistance.", "type": "Expression profiling by array", "pubmed_id": "18240145", "platform": "GPL3877", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23232", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE8325", "order": "none", "update_date": "Jul 01 2008", "subsets": [ { "dataset_id": "GDS2971", "description": "HTI-286", "sample_id": [ "GSM206100", "GSM206166", "GSM206167", "GSM206168", "GSM206169", "GSM206170" ], "type": "agent", "id": "GDS2971_1" }, { "dataset_id": "GDS2971", "description": "docetaxel", "sample_id": [ "GSM206357", "GSM206358", "GSM206359", "GSM206360", "GSM206361", "GSM206362" ], "type": "agent", "id": "GDS2971_2" } ], "taxid": "9606", "genes": 19414, "aggregation_function": "mean", "name": "GDS2971", "version": 1.0, "instances": "12", "variables": 19416, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2971.tab", "compression": "gz" } ], [ [ "GDS2972.tab" ], { "title": "Vitamin E supplementation effect on aged heart", "description": "Analysis of hearts of 30-month-old B6C3F1 animals fed a diet supplemented with alpha-tocopherol alone or in combination with gamma-tocopherol. Vitamin E supplementation initiated at 15 months of age.", "type": "Expression profiling by array", "pubmed_id": "17316780", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE8146", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2972", "description": "5 mo", "sample_id": [ "GSM201691", "GSM201733", "GSM201734", "GSM201736", "GSM201737" ], "type": "age", "id": "GDS2972_1" }, { "dataset_id": "GDS2972", "description": "30 mo", "sample_id": [ "GSM201741", "GSM201753", "GSM201767", "GSM201768", "GSM201770", "GSM201772", "GSM201773", "GSM201775", "GSM201777", "GSM201778", "GSM201780", "GSM201782", "GSM201784", "GSM201786", "GSM201788" ], "type": "age", "id": "GDS2972_2" }, { "dataset_id": "GDS2972", "description": "control", "sample_id": [ "GSM201691", "GSM201733", "GSM201734", "GSM201736", "GSM201737", "GSM201741", "GSM201753", "GSM201767", "GSM201768", "GSM201770" ], "type": "agent", "id": "GDS2972_3" }, { "dataset_id": "GDS2972", "description": "alpha-tocopherol", "sample_id": [ "GSM201772", "GSM201773", "GSM201775", "GSM201777", "GSM201778" ], "type": "agent", "id": "GDS2972_4" }, { "dataset_id": "GDS2972", "description": "alpha- and gamma-tocopherol", "sample_id": [ "GSM201780", "GSM201782", "GSM201784", "GSM201786", "GSM201788" ], "type": "agent", "id": "GDS2972_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2972", "version": 1.0, "instances": "20", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2972.tab", "compression": "gz" } ], [ [ "GDS2973.tab" ], { "title": "Vitamin E supplementation effect on aged brain", "description": "Analysis of brains of aged (30-month-old) B6C3F1 animals fed a diet containing alpha-tocopherol alone or in combination with gamma-tocopherol. Both of these vitamin E homologs exhibit anti-inflammatory properties. Results provide insight into the effects of vitamin E supplementation on aged brain.", "type": "Expression profiling by array", "pubmed_id": "17316780", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE8150", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS2973", "description": "5 mo", "sample_id": [ "GSM201791", "GSM201792", "GSM201793", "GSM201794", "GSM201795" ], "type": "age", "id": "GDS2973_1" }, { "dataset_id": "GDS2973", "description": "30 mo", "sample_id": [ "GSM201796", "GSM201797", "GSM201799", "GSM201801", "GSM201802", "GSM201804", "GSM201805", "GSM201806", "GSM201808", "GSM201809", "GSM201811", "GSM201812", "GSM201813", "GSM201814", "GSM201815" ], "type": "age", "id": "GDS2973_2" }, { "dataset_id": "GDS2973", "description": "control", "sample_id": [ "GSM201791", "GSM201792", "GSM201793", "GSM201794", "GSM201795", "GSM201796", "GSM201797", "GSM201799", "GSM201801", "GSM201802" ], "type": "agent", "id": "GDS2973_3" }, { "dataset_id": "GDS2973", "description": "alpha-tocopherol", "sample_id": [ "GSM201804", "GSM201805", "GSM201806", "GSM201808", "GSM201809" ], "type": "agent", "id": "GDS2973_4" }, { "dataset_id": "GDS2973", "description": "alpha- and gamma-tocopherol", "sample_id": [ "GSM201811", "GSM201812", "GSM201813", "GSM201814", "GSM201815" ], "type": "agent", "id": "GDS2973_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2973", "version": 1.0, "instances": "20", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2973.tab", "compression": "gz" } ], [ [ "GDS2974.tab" ], { "title": "TGF-beta overexpression effect on the cornea", "description": "Analysis of corneas from transgenics overexpressing transforming growth factor-beta (TGF-beta). The transgenics developed corneas that were opaque, vascularized, and lacking sensory nerves. Results provide insight into the molecular mechanisms underlying normal corneal development.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE6676", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS2974", "description": "TGF-beta overexpression", "sample_id": [ "GSM154328", "GSM154329", "GSM154330", "GSM154331" ], "type": "protocol", "id": "GDS2974_1" }, { "dataset_id": "GDS2974", "description": "control", "sample_id": [ "GSM154332", "GSM154333", "GSM154334", "GSM154335" ], "type": "protocol", "id": "GDS2974_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2974", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2974.tab", "compression": "gz" } ], [ [ "GDS2975.tab" ], { "title": "TGF-beta 1 effect on immortalized ovarian surface epithelial cell line: time course", "description": "Analysis of immortalized ovarian surface epithelial (IOSE) cells treated for up to 12 hours with transforming growth factor beta 1 (TGFb1). IOSE cells are derived from normal ovarian epithelial cells which, unlike ovarian cancer, respond to TGFb1-induced growth inhibition.", "type": "Expression profiling by array", "pubmed_id": "19615063", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE6653", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2975", "description": "0 h", "sample_id": [ "GSM154124", "GSM154125" ], "type": "time", "id": "GDS2975_1" }, { "dataset_id": "GDS2975", "description": "3 h", "sample_id": [ "GSM154126", "GSM154127" ], "type": "time", "id": "GDS2975_2" }, { "dataset_id": "GDS2975", "description": "6 h", "sample_id": [ "GSM154128", "GSM154129" ], "type": "time", "id": "GDS2975_3" }, { "dataset_id": "GDS2975", "description": "12 h", "sample_id": [ "GSM154130", "GSM154131" ], "type": "time", "id": "GDS2975_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2975", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2975.tab", "compression": "gz" } ], [ [ "GDS2976.tab" ], { "title": "Ultrafine particles effect on ovalbumin-sensitized lungs", "description": "Analysis of lungs from ovalbumin-sensitized BALB/cJ animals exposed to ultrafine carbon particles (UCP). Ovalbumin-sensitized animals are models for allergic asthma. Results provide insight into the effect of ultrafine particle inhalation on development and progression of allergic asthma.", "type": "Expression profiling by array", "pubmed_id": "18300050", "platform": "GPL4636", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20205", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log2 ratio", "reference_series": "GSE6496", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2976", "description": "control", "sample_id": [ "GSM149401", "GSM149402" ], "type": "agent", "id": "GDS2976_1" }, { "dataset_id": "GDS2976", "description": "ultrafine carbon particles", "sample_id": [ "GSM149403", "GSM149404" ], "type": "agent", "id": "GDS2976_2" } ], "taxid": "10090", "genes": 12680, "aggregation_function": "mean", "name": "GDS2976", "version": 1.0, "instances": "4", "variables": 12682, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2976.tab", "compression": "gz" } ], [ [ "GDS2977.tab" ], { "title": "Host bladder urothelial response to intracellular bacterial communities", "description": "Analysis of urothelial cells distal to or proximal to sites of intracellular bacterial communities (IBCs) of uropathogenic Escherichia coli (UPEC) in infected bladders. UPEC is the primary cause of urinary tract infection in women. Results provide insight into localized urothelial responses to IBCs.", "type": "Expression profiling by array", "pubmed_id": "17504765", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE6419", "order": "none", "update_date": "Oct 10 2008", "subsets": [ { "dataset_id": "GDS2977", "description": "uninfected", "sample_id": [ "GSM148017", "GSM148018" ], "type": "disease state", "id": "GDS2977_1" }, { "dataset_id": "GDS2977", "description": "mock-infected", "sample_id": [ "GSM148019", "GSM148020" ], "type": "disease state", "id": "GDS2977_2" }, { "dataset_id": "GDS2977", "description": "infected", "sample_id": [ "GSM148021", "GSM148022", "GSM148023", "GSM148024" ], "type": "disease state", "id": "GDS2977_3" }, { "dataset_id": "GDS2977", "description": "not applicable", "sample_id": [ "GSM148017", "GSM148018", "GSM148019", "GSM148020" ], "type": "other", "id": "GDS2977_4" }, { "dataset_id": "GDS2977", "description": "proximal", "sample_id": [ "GSM148023", "GSM148024" ], "type": "other", "id": "GDS2977_5" }, { "dataset_id": "GDS2977", "description": "distal", "sample_id": [ "GSM148021", "GSM148022" ], "type": "other", "id": "GDS2977_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2977", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2977.tab", "compression": "gz" } ], [ [ "GDS2978.tab" ], { "title": "Multiple sclerosis: brain", "description": "Analysis of brains of individuals afflicted with multiple sclerosis (MS), a primary demyelinating disease of the central nervous system. Results provide insight into the molecular mechanisms underlying MS pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE5839", "order": "none", "update_date": "Oct 14 2008", "subsets": [ { "dataset_id": "GDS2978", "description": "control", "sample_id": [ "GSM136140" ], "type": "disease state", "id": "GDS2978_1" }, { "dataset_id": "GDS2978", "description": "multiple sclerosis", "sample_id": [ "GSM134953", "GSM136147", "GSM136149" ], "type": "disease state", "id": "GDS2978_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2978", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2978.tab", "compression": "gz" } ], [ [ "GDS298.tab" ], { "title": "Ligand screen in B cells: CGS-21680 hydrochloride (adenosine)", "description": "Temporal analysis of effects induced by 30 mM CGS-21680 hydrochloride (adenosine) in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE377", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS298", "description": "30 minute", "sample_id": [ "GSM5509", "GSM5510", "GSM5511" ], "type": "time", "id": "GDS298_1" }, { "dataset_id": "GDS298", "description": "60 minute", "sample_id": [ "GSM5512", "GSM5513", "GSM5514" ], "type": "time", "id": "GDS298_2" }, { "dataset_id": "GDS298", "description": "120 minute", "sample_id": [ "GSM5515", "GSM5516" ], "type": "time", "id": "GDS298_3" }, { "dataset_id": "GDS298", "description": "240 minute", "sample_id": [ "GSM5517", "GSM5518", "GSM5519" ], "type": "time", "id": "GDS298_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS298", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS298.tab", "compression": "gz" } ], [ [ "GDS2980.tab" ], { "title": "T-dependent and T-independent germinal center B cells", "description": "Comparison of T-dependent (TD) and T-independent (TI) germinal center B cells from animals 4 days after immunization. The TD animals were carrier-primed 5 weeks earlier so that T-cell help was not limiting. Results provide insight into molecular differences between TD and TI germinal center B cells.", "type": "Expression profiling by array", "pubmed_id": "17938642", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE8906", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2980", "description": "resting B cell", "sample_id": [ "GSM225630", "GSM225631" ], "type": "cell type", "id": "GDS2980_1" }, { "dataset_id": "GDS2980", "description": "TI germinal center B cell", "sample_id": [ "GSM225636", "GSM225637" ], "type": "cell type", "id": "GDS2980_2" }, { "dataset_id": "GDS2980", "description": "TD germinal center B cell", "sample_id": [ "GSM225632", "GSM225633", "GSM225634", "GSM225635" ], "type": "cell type", "id": "GDS2980_3" }, { "dataset_id": "GDS2980", "description": "control", "sample_id": [ "GSM225630", "GSM225631" ], "type": "protocol", "id": "GDS2980_4" }, { "dataset_id": "GDS2980", "description": "non-carrier primed", "sample_id": [ "GSM225634", "GSM225635" ], "type": "protocol", "id": "GDS2980_5" }, { "dataset_id": "GDS2980", "description": "carrier primed", "sample_id": [ "GSM225632", "GSM225633" ], "type": "protocol", "id": "GDS2980_6" }, { "dataset_id": "GDS2980", "description": "not applicable", "sample_id": [ "GSM225636", "GSM225637" ], "type": "protocol", "id": "GDS2980_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS2980", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2980.tab", "compression": "gz" } ], [ [ "GDS2981.tab" ], { "title": "Embryos of various inbred lines: time course", "description": "Analysis of 5 and 8 hour embryos from 9 inbred lines. Results provide insight into the extent of gene expression variation in natural populations during early development.", "type": "Expression profiling by array", "pubmed_id": "19021738", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE8892", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS2981", "description": "5 h", "sample_id": [ "GSM225283", "GSM225286", "GSM225288", "GSM225289", "GSM225291", "GSM225293", "GSM225296", "GSM225298", "GSM225299", "GSM225302", "GSM225304", "GSM225306", "GSM225307", "GSM225309", "GSM225317", "GSM225318", "GSM225319", "GSM225320" ], "type": "age", "id": "GDS2981_1" }, { "dataset_id": "GDS2981", "description": "8 h", "sample_id": [ "GSM225322", "GSM225323", "GSM225324", "GSM225325", "GSM225326", "GSM225327", "GSM225328", "GSM225329", "GSM225330", "GSM225331", "GSM225332", "GSM225333", "GSM225334", "GSM225335", "GSM225336", "GSM225337", "GSM225338", "GSM225339" ], "type": "age", "id": "GDS2981_2" }, { "dataset_id": "GDS2981", "description": "line 17", "sample_id": [ "GSM225283", "GSM225286", "GSM225322", "GSM225323" ], "type": "strain", "id": "GDS2981_3" }, { "dataset_id": "GDS2981", "description": "line 23", "sample_id": [ "GSM225288", "GSM225289", "GSM225324", "GSM225325" ], "type": "strain", "id": "GDS2981_4" }, { "dataset_id": "GDS2981", "description": "line 58", "sample_id": [ "GSM225291", "GSM225293", "GSM225326", "GSM225327" ], "type": "strain", "id": "GDS2981_5" }, { "dataset_id": "GDS2981", "description": "line 75", "sample_id": [ "GSM225296", "GSM225298", "GSM225328", "GSM225329" ], "type": "strain", "id": "GDS2981_6" }, { "dataset_id": "GDS2981", "description": "line 83", "sample_id": [ "GSM225299", "GSM225302", "GSM225330", "GSM225331" ], "type": "strain", "id": "GDS2981_7" }, { "dataset_id": "GDS2981", "description": "line 89", "sample_id": [ "GSM225304", "GSM225306", "GSM225332", "GSM225333" ], "type": "strain", "id": "GDS2981_8" }, { "dataset_id": "GDS2981", "description": "line 128", "sample_id": [ "GSM225307", "GSM225309", "GSM225334", "GSM225335" ], "type": "strain", "id": "GDS2981_9" }, { "dataset_id": "GDS2981", "description": "line 134", "sample_id": [ "GSM225317", "GSM225318", "GSM225336", "GSM225337" ], "type": "strain", "id": "GDS2981_10" }, { "dataset_id": "GDS2981", "description": "line 145", "sample_id": [ "GSM225319", "GSM225320", "GSM225338", "GSM225339" ], "type": "strain", "id": "GDS2981_11" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS2981", "version": 1.0, "instances": "36", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2981.tab", "compression": "gz" } ], [ [ "GDS2982.tab" ], { "title": "CD11b-plus CD11c-minus macrophages of the intestinal lamina propria", "description": "Comparison of CD11b+ CD11c- macrophages of the small intestinal lamina propria and the spleen. The intestinal immune system responds robustly to pathogens yet remains tolerant to commensals and food antigens. Results provide insight into the role of intestinal macrophages in immune tolerance.", "type": "Expression profiling by array", "pubmed_id": "17873879", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8868", "order": "none", "update_date": "Sep 24 2007", "subsets": [ { "dataset_id": "GDS2982", "description": "splenic macrophage", "sample_id": [ "GSM224733", "GSM224735" ], "type": "cell type", "id": "GDS2982_1" }, { "dataset_id": "GDS2982", "description": "intestinal macrophage", "sample_id": [ "GSM224734", "GSM224736" ], "type": "cell type", "id": "GDS2982_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2982", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2982.tab", "compression": "gz" } ], [ [ "GDS2984.tab" ], { "title": "Beta-catenin inactivation effect on intestinal crypts", "description": "Analysis of intestinal crypts following inactivation of beta catenin. The mucosa of the intestine is composed of submucosal invaginations called intestinal crypts. Results provide insight into the molecular mechanisms underlying crypt loss as a result of beta-catenin inactivation.", "type": "Expression profiling by array", "pubmed_id": "17785439", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8818", "order": "none", "update_date": "Sep 25 2007", "subsets": [ { "dataset_id": "GDS2984", "description": "control", "sample_id": [ "GSM219114", "GSM219115" ], "type": "protocol", "id": "GDS2984_1" }, { "dataset_id": "GDS2984", "description": "beta-catenin inactivation", "sample_id": [ "GSM219116", "GSM219117" ], "type": "protocol", "id": "GDS2984_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2984", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2984.tab", "compression": "gz" } ], [ [ "GDS2987.tab" ], { "title": "Comparison of Rho kinase inhibitor and atorvastatin effects on primary cell lines", "description": "Analysis of three primary cell lines treated with Rho kinase (ROCK) 2 inhibitor SLx-2119 or with atorvastatin. Effects of ROCK inhibitors overlap to some extent with the pleiotropic (nonlipid lowering) effects of statins. Results suggest possible synergistic effects between the two classes of drugs.", "type": "Expression profiling by array", "pubmed_id": "18832915", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE8686", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS2987", "description": "microvascular endothelial cells", "sample_id": [ "GSM214810", "GSM215244", "GSM215253", "GSM215254", "GSM215282", "GSM215283", "GSM215284", "GSM215293", "GSM215294", "GSM215295", "GSM215296", "GSM215344" ], "type": "cell line", "id": "GDS2987_1" }, { "dataset_id": "GDS2987", "description": "pulmonary artery smooth muscle cells", "sample_id": [ "GSM215297", "GSM215298", "GSM215310", "GSM215311", "GSM215312", "GSM215313", "GSM215324", "GSM215325", "GSM215326", "GSM215327", "GSM215328", "GSM215329" ], "type": "cell line", "id": "GDS2987_2" }, { "dataset_id": "GDS2987", "description": "dermal fibroblasts", "sample_id": [ "GSM215330", "GSM215331", "GSM215332", "GSM215333", "GSM215334", "GSM215335", "GSM215336", "GSM215337", "GSM215338", "GSM215339", "GSM215340", "GSM215341" ], "type": "cell line", "id": "GDS2987_3" }, { "dataset_id": "GDS2987", "description": "vehicle", "sample_id": [ "GSM214810", "GSM215244", "GSM215253", "GSM215297", "GSM215298", "GSM215310", "GSM215330", "GSM215331", "GSM215332" ], "type": "agent", "id": "GDS2987_4" }, { "dataset_id": "GDS2987", "description": "atorvastatin", "sample_id": [ "GSM215254", "GSM215282", "GSM215311", "GSM215312", "GSM215313", "GSM215333", "GSM215334", "GSM215335", "GSM215344" ], "type": "agent", "id": "GDS2987_5" }, { "dataset_id": "GDS2987", "description": "atorvastatin and mevalonate", "sample_id": [ "GSM215283", "GSM215284", "GSM215293", "GSM215324", "GSM215325", "GSM215326", "GSM215336", "GSM215337", "GSM215338" ], "type": "agent", "id": "GDS2987_6" }, { "dataset_id": "GDS2987", "description": "SLx-2119", "sample_id": [ "GSM215294", "GSM215295", "GSM215296", "GSM215327", "GSM215328", "GSM215329", "GSM215339", "GSM215340", "GSM215341" ], "type": "agent", "id": "GDS2987_7" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS2987", "version": 1.0, "instances": "36", "variables": 44920, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2987.tab", "compression": "gz" } ], [ [ "GDS2988.tab" ], { "title": "Paeoniflorin effect on lymphoma cell line: time course", "description": "Analysis of U937 lymphoma cells at various time points up to 6 hours following treatment with paeoniflorin (PF). PF, isolated from paeony roots, causes apoptosis and is a chemical heat shock protein (HSP) inducer. Results provide insight into the molecular mechanisms of action of this compound.", "type": "Expression profiling by array", "pubmed_id": "17952766", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8228", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS2988", "description": "untreated", "sample_id": [ "GSM203590" ], "type": "agent", "id": "GDS2988_1" }, { "dataset_id": "GDS2988", "description": "paeoniflorin", "sample_id": [ "GSM203591", "GSM203592", "GSM203593" ], "type": "agent", "id": "GDS2988_2" }, { "dataset_id": "GDS2988", "description": "control", "sample_id": [ "GSM203590" ], "type": "time", "id": "GDS2988_3" }, { "dataset_id": "GDS2988", "description": "0 h", "sample_id": [ "GSM203591" ], "type": "time", "id": "GDS2988_4" }, { "dataset_id": "GDS2988", "description": "3 h", "sample_id": [ "GSM203592" ], "type": "time", "id": "GDS2988_5" }, { "dataset_id": "GDS2988", "description": "6 h", "sample_id": [ "GSM203593" ], "type": "time", "id": "GDS2988_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS2988", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2988.tab", "compression": "gz" } ], [ [ "GDS2989.tab" ], { "title": "Small intestine postnatal development", "description": "Analysis of ilea from animals at postnatal days 4 to 32. During the early postnatal period, lymphocytes migrate into the small intestine. Results provide insight into the molecular response of small intestinal epithelial to postnatal lymphocytic migration into the small intestinal mucosa.", "type": "Expression profiling by array", "pubmed_id": "18388184", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE8065", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS2989", "description": "4 d", "sample_id": [ "GSM198782", "GSM198827", "GSM198832" ], "type": "age", "id": "GDS2989_1" }, { "dataset_id": "GDS2989", "description": "7 d", "sample_id": [ "GSM198842", "GSM198848", "GSM198856" ], "type": "age", "id": "GDS2989_2" }, { "dataset_id": "GDS2989", "description": "9 d", "sample_id": [ "GSM198878", "GSM198879", "GSM198880" ], "type": "age", "id": "GDS2989_3" }, { "dataset_id": "GDS2989", "description": "11 d", "sample_id": [ "GSM198881", "GSM198882", "GSM198883" ], "type": "age", "id": "GDS2989_4" }, { "dataset_id": "GDS2989", "description": "24 d", "sample_id": [ "GSM198884", "GSM198885", "GSM198941" ], "type": "age", "id": "GDS2989_5" }, { "dataset_id": "GDS2989", "description": "32 d", "sample_id": [ "GSM198887", "GSM198939", "GSM198940" ], "type": "age", "id": "GDS2989_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS2989", "version": 1.0, "instances": "18", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2989.tab", "compression": "gz" } ], [ [ "GDS299.tab" ], { "title": "Ligand screen in B cells: CpG-oligodeoxynucleotide", "description": "Temporal analysis of effects induced by 30 uM CpG-containing oligodeoxynucleotide in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE378", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS299", "description": "30 minute", "sample_id": [ "GSM5520", "GSM5521", "GSM5522" ], "type": "time", "id": "GDS299_1" }, { "dataset_id": "GDS299", "description": "60 minute", "sample_id": [ "GSM5523", "GSM5524", "GSM5525" ], "type": "time", "id": "GDS299_2" }, { "dataset_id": "GDS299", "description": "120 minute", "sample_id": [ "GSM5526", "GSM5527", "GSM5528" ], "type": "time", "id": "GDS299_3" }, { "dataset_id": "GDS299", "description": "240 minute", "sample_id": [ "GSM5529", "GSM5530", "GSM5531" ], "type": "time", "id": "GDS299_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS299", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS299.tab", "compression": "gz" } ], [ [ "GDS2990.tab" ], { "title": "Cigarette smoking effect on full-term placenta", "description": "Analysis of full-term placentas exposed to maternal cigarette smoke. The placenta produces and metabolizes steroids and xenobiotics. Results provide insight into the effects of maternal cigarette smoking on the placenta at term, with a focus on xenobiotic- and steroid-metabolizing genes.", "type": "Expression profiling by array", "pubmed_id": "17928820", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE7434", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS2990", "description": "control", "sample_id": [ "GSM180067", "GSM180432", "GSM180439", "GSM180443", "GSM180446" ], "type": "stress", "id": "GDS2990_1" }, { "dataset_id": "GDS2990", "description": "cigarette smoking", "sample_id": [ "GSM180078", "GSM180445", "GSM180447", "GSM180448", "GSM180449" ], "type": "stress", "id": "GDS2990_2" }, { "dataset_id": "GDS2990", "description": "male offspring", "sample_id": [ "GSM180067", "GSM180078", "GSM180439", "GSM180443", "GSM180445", "GSM180447", "GSM180448", "GSM180449" ], "type": "gender", "id": "GDS2990_3" }, { "dataset_id": "GDS2990", "description": "female offspring", "sample_id": [ "GSM180432", "GSM180446" ], "type": "gender", "id": "GDS2990_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS2990", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2990.tab", "compression": "gz" } ], [ [ "GDS2991.tab" ], { "title": "Hepatoerythropoietic porphyria model", "description": "Analysis of mutant larvae defective for uroporphyrinogen decarboxylase (UROD) at 56 to 96 hours post-fertilization (hpf). UROD is the fifth enzyme in heme biosynthesis. The UROD mutant is a model for hepatoerythropoietic porphyria (HEP). Results provide insight into the pathogenesis of HEP.", "type": "Expression profiling by array", "pubmed_id": "17895525", "platform": "GPL5692", "platform_organism": "Danio rerio", "platform_technology_type": "spotted oligonucleotide", "feature_count": "14720", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE8651", "order": "none", "update_date": "Oct 01 2007", "subsets": [ { "dataset_id": "GDS2991", "description": "wild type", "sample_id": [ "GSM214542", "GSM214543", "GSM214544", "GSM214545" ], "type": "genotype/variation", "id": "GDS2991_1" }, { "dataset_id": "GDS2991", "description": "UROD mutant", "sample_id": [ "GSM214546", "GSM214547", "GSM214548", "GSM214549" ], "type": "genotype/variation", "id": "GDS2991_2" }, { "dataset_id": "GDS2991", "description": "56 hpf", "sample_id": [ "GSM214542", "GSM214546" ], "type": "age", "id": "GDS2991_3" }, { "dataset_id": "GDS2991", "description": "72 hpf", "sample_id": [ "GSM214543", "GSM214547" ], "type": "age", "id": "GDS2991_4" }, { "dataset_id": "GDS2991", "description": "84 hpf", "sample_id": [ "GSM214544", "GSM214548" ], "type": "age", "id": "GDS2991_5" }, { "dataset_id": "GDS2991", "description": "96 hpf", "sample_id": [ "GSM214545", "GSM214549" ], "type": "age", "id": "GDS2991_6" } ], "taxid": "7955", "genes": 8665, "aggregation_function": "mean", "name": "GDS2991", "version": 1.0, "instances": "8", "variables": 8668, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2991.tab", "compression": "gz" } ], [ [ "GDS2993.tab" ], { "title": "Histone deacetylase 5 deficient nucleus accumbens response to cocaine", "description": "Analysis of nuclei accumbens (NAc) from histone deacetylase 5 (HDAC5) mutants treated with cocaine for 7 days. The NAc is a major brain reward region; loss of HDAC5 causes hypersensitive responses to chronic cocaine. Results provide insight into the role of histone deacetylation in drug addiction.", "type": "Expression profiling by array", "pubmed_id": "17988634", "platform": "GPL4234", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46133", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE9134", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS2993", "description": "wild type", "sample_id": [ "GSM231028", "GSM231030", "GSM231032", "GSM231034", "GSM231036", "GSM231038", "GSM231040", "GSM231041", "GSM231044", "GSM231046", "GSM231047", "GSM231050", "GSM231052", "GSM231055", "GSM231057" ], "type": "genotype/variation", "id": "GDS2993_1" }, { "dataset_id": "GDS2993", "description": "histone deacetylase 5 null", "sample_id": [ "GSM231029", "GSM231031", "GSM231033", "GSM231035", "GSM231037", "GSM231039", "GSM231042", "GSM231043", "GSM231045", "GSM231048", "GSM231049", "GSM231051", "GSM231053", "GSM231054", "GSM231056" ], "type": "genotype/variation", "id": "GDS2993_2" }, { "dataset_id": "GDS2993", "description": "control", "sample_id": [ "GSM231028", "GSM231029", "GSM231034", "GSM231035", "GSM231038", "GSM231039", "GSM231040", "GSM231042", "GSM231044", "GSM231045", "GSM231046", "GSM231048", "GSM231052", "GSM231053" ], "type": "agent", "id": "GDS2993_3" }, { "dataset_id": "GDS2993", "description": "cocaine", "sample_id": [ "GSM231030", "GSM231031", "GSM231032", "GSM231033", "GSM231036", "GSM231037", "GSM231041", "GSM231043", "GSM231047", "GSM231049", "GSM231050", "GSM231051", "GSM231054", "GSM231055", "GSM231056", "GSM231057" ], "type": "agent", "id": "GDS2993_4" } ], "taxid": "10090", "genes": 33750, "aggregation_function": "mean", "name": "GDS2993", "version": 1.0, "instances": "30", "variables": 33753, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2993.tab", "compression": "gz" } ], [ [ "GDS2996.tab" ], { "title": "Dystrophin deficiency effect on cardiac muscles: time course", "description": "Analysis of cardiac muscles from 8-week and 10.5-month-old mdx animals that lack dystrophin. The mdx animal is a model for Duchenne muscular dystrophy. Results provide insight into the molecular mechanisms underlying the pathogenesis of muscular dystrophy.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1471", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS2996", "description": "control", "sample_id": [ "GSM24794", "GSM24795", "GSM24796", "GSM24800", "GSM24801", "GSM24802" ], "type": "genotype/variation", "id": "GDS2996_1" }, { "dataset_id": "GDS2996", "description": "dystrophin null", "sample_id": [ "GSM24797", "GSM24798", "GSM24799", "GSM24803", "GSM24804", "GSM24805" ], "type": "genotype/variation", "id": "GDS2996_2" }, { "dataset_id": "GDS2996", "description": "8 wk", "sample_id": [ "GSM24794", "GSM24795", "GSM24796", "GSM24797", "GSM24798", "GSM24799" ], "type": "age", "id": "GDS2996_3" }, { "dataset_id": "GDS2996", "description": "10.5 mo", "sample_id": [ "GSM24800", "GSM24801", "GSM24802", "GSM24803", "GSM24804", "GSM24805" ], "type": "age", "id": "GDS2996_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS2996", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2996.tab", "compression": "gz" } ], [ [ "GDS2998.tab" ], { "title": "Deltamethrin and permethrin effect on the frontal cerebral cortex: dose response", "description": "Analysis of brain frontal cerebral cortices of animals treated with various doses of deltamethrin or permethrin, which are neurotoxic pyrethroids used as insecticides. Results provide insight into molecular mechanisms underlying pyrethroid-induced disruption of nervous system excitability.", "type": "Expression profiling by array", "pubmed_id": "19017407", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "transformed count", "reference_series": "GSE7955", "order": "none", "update_date": "May 14 2015", "subsets": [ { "dataset_id": "GDS2998", "description": "untreated", "sample_id": [ "GSM190915", "GSM195231", "GSM195232", "GSM195233", "GSM195234", "GSM195235", "GSM195236", "GSM195237", "GSM195238", "GSM195239", "GSM195240", "GSM195241" ], "type": "agent", "id": "GDS2998_1" }, { "dataset_id": "GDS2998", "description": "permethrin", "sample_id": [ "GSM195242", "GSM195243", "GSM195248", "GSM195249", "GSM195250", "GSM195251", "GSM195252", "GSM195253", "GSM195254", "GSM195255", "GSM195256", "GSM195257", "GSM195258", "GSM195259", "GSM195260", "GSM195261", "GSM195263", "GSM195264", "GSM195265", "GSM195266", "GSM195267", "GSM195269", "GSM195270", "GSM195272" ], "type": "agent", "id": "GDS2998_2" }, { "dataset_id": "GDS2998", "description": "deltamethrin", "sample_id": [ "GSM195276", "GSM195278", "GSM195280", "GSM195281", "GSM195283", "GSM195285", "GSM195286", "GSM195288", "GSM195289", "GSM195290", "GSM195291", "GSM195292", "GSM195293", "GSM195295", "GSM195296", "GSM195297", "GSM195298", "GSM195299", "GSM195300", "GSM195301", "GSM195302", "GSM195303", "GSM195304", "GSM195305" ], "type": "agent", "id": "GDS2998_3" }, { "dataset_id": "GDS2998", "description": "control", "sample_id": [ "GSM190915", "GSM195231", "GSM195232", "GSM195233", "GSM195234", "GSM195235", "GSM195236", "GSM195237", "GSM195238", "GSM195239", "GSM195240", "GSM195241" ], "type": "dose", "id": "GDS2998_4" }, { "dataset_id": "GDS2998", "description": "0.3 mg/kg", "sample_id": [ "GSM195276", "GSM195278", "GSM195280", "GSM195281", "GSM195283", "GSM195285", "GSM195286", "GSM195288" ], "type": "dose", "id": "GDS2998_5" }, { "dataset_id": "GDS2998", "description": "1 mg/kg", "sample_id": [ "GSM195242", "GSM195243", "GSM195248", "GSM195249", "GSM195250", "GSM195251", "GSM195252", "GSM195253", "GSM195289", "GSM195290", "GSM195291", "GSM195292", "GSM195293", "GSM195295", "GSM195296", "GSM195297" ], "type": "dose", "id": "GDS2998_6" }, { "dataset_id": "GDS2998", "description": "3 mg/kg", "sample_id": [ "GSM195298", "GSM195299", "GSM195300", "GSM195301", "GSM195302", "GSM195303", "GSM195304", "GSM195305" ], "type": "dose", "id": "GDS2998_7" }, { "dataset_id": "GDS2998", "description": "10 mg/kg", "sample_id": [ "GSM195254", "GSM195255", "GSM195256", "GSM195257", "GSM195258", "GSM195259", "GSM195260", "GSM195261" ], "type": "dose", "id": "GDS2998_8" }, { "dataset_id": "GDS2998", "description": "100 mg/kg", "sample_id": [ "GSM195263", "GSM195264", "GSM195265", "GSM195266", "GSM195267", "GSM195269", "GSM195270", "GSM195272" ], "type": "dose", "id": "GDS2998_9" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS2998", "version": 1.0, "instances": "60", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2998.tab", "compression": "gz" } ], [ [ "GDS2999.tab" ], { "title": "Gentamicin effect on Saccharomyces cerevisiae", "description": "Analysis of Saccharomyces cerevisiae strain 4073 cultures treated with gentamicin. Gentamicin is an antibiotic used against gram-negative bacterial infections. Its usefulness is limited by nephrotoxicity. Results provide insight into the molecular mechanisms underlying gentamicin's renal toxicity.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7188", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS2999", "description": "control", "sample_id": [ "GSM172916", "GSM172917", "GSM172918", "GSM172919" ], "type": "agent", "id": "GDS2999_1" }, { "dataset_id": "GDS2999", "description": "gentamicin", "sample_id": [ "GSM172920", "GSM172921", "GSM172922", "GSM172923" ], "type": "agent", "id": "GDS2999_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS2999", "version": 1.0, "instances": "8", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS2999.tab", "compression": "gz" } ], [ [ "GDS30.tab" ], { "title": "Diamide treatment time course", "description": "Diamide (1.5 mM) added to culture, and samples recovered at several time points up to 90 minutes. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL53", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS30", "description": "5 minute", "sample_id": [ "GSM971" ], "type": "time", "id": "GDS30_1" }, { "dataset_id": "GDS30", "description": "10 minute", "sample_id": [ "GSM1057" ], "type": "time", "id": "GDS30_2" }, { "dataset_id": "GDS30", "description": "20 minute", "sample_id": [ "GSM1058" ], "type": "time", "id": "GDS30_3" }, { "dataset_id": "GDS30", "description": "30 minute", "sample_id": [ "GSM1059" ], "type": "time", "id": "GDS30_4" }, { "dataset_id": "GDS30", "description": "40 minute", "sample_id": [ "GSM1060" ], "type": "time", "id": "GDS30_5" }, { "dataset_id": "GDS30", "description": "50 minute", "sample_id": [ "GSM1061" ], "type": "time", "id": "GDS30_6" }, { "dataset_id": "GDS30", "description": "60 minute", "sample_id": [ "GSM1063" ], "type": "time", "id": "GDS30_7" }, { "dataset_id": "GDS30", "description": "90 minute", "sample_id": [ "GSM1064" ], "type": "time", "id": "GDS30_8" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS30", "version": 1.0, "instances": "8", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS30.tab", "compression": "gz" } ], [ [ "GDS300.tab" ], { "title": "Ligand screen in B cells: dimaprit", "description": "Temporal analysis of effects induced by 10 uM dimaprit in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE379", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS300", "description": "30 minute", "sample_id": [ "GSM5532", "GSM5533", "GSM5534" ], "type": "time", "id": "GDS300_1" }, { "dataset_id": "GDS300", "description": "60 minute", "sample_id": [ "GSM5535", "GSM5536", "GSM5537" ], "type": "time", "id": "GDS300_2" }, { "dataset_id": "GDS300", "description": "120 minute", "sample_id": [ "GSM5538", "GSM5539", "GSM5540" ], "type": "time", "id": "GDS300_3" }, { "dataset_id": "GDS300", "description": "240 minute", "sample_id": [ "GSM5541", "GSM5542", "GSM5543" ], "type": "time", "id": "GDS300_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS300", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS300.tab", "compression": "gz" } ], [ [ "GDS3000.tab" ], { "title": "NeuroD1 deficiency effect on the pineal gland", "description": "Analysis of pineal glands of neonates lacking neurogenic differentiation factor 1 (NeuroD1, also referred to as BETA2). NeuroD1 is a member of the bHLH transcription factor family. Results provide insight into the role of NeuroD1 in the pineal gland.", "type": "Expression profiling by array", "pubmed_id": "17630985", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6030", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3000", "description": "wild type", "sample_id": [ "GSM139983", "GSM139984", "GSM139985" ], "type": "genotype/variation", "id": "GDS3000_1" }, { "dataset_id": "GDS3000", "description": "NeuroD1 null", "sample_id": [ "GSM139986", "GSM139987", "GSM139988" ], "type": "genotype/variation", "id": "GDS3000_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3000", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3000.tab", "compression": "gz" } ], [ [ "GDS3001.tab" ], { "title": "c-Jun N-terminal kinase 1 depletion effect on livers of diet-induced obese animals", "description": "Analysis of c-Jun N-terminal kinase (JNK) 1 depleted livers of diet-induced obese (DIO) animals. The DIO animal is a model of mild obesity and insulin resistance. Results provide insight into the specific role of hepatic JNK1 in contributing to insulin resistance in DIO animals.", "type": "Expression profiling by array", "pubmed_id": "17550900", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE7648", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3001", "description": "vehicle control", "sample_id": [ "GSM185015", "GSM185016", "GSM185017", "GSM185018", "GSM185019" ], "type": "protocol", "id": "GDS3001_1" }, { "dataset_id": "GDS3001", "description": "GFP control", "sample_id": [ "GSM185020", "GSM185021", "GSM185022", "GSM185023" ], "type": "protocol", "id": "GDS3001_2" }, { "dataset_id": "GDS3001", "description": "JNK1 depletion", "sample_id": [ "GSM185024", "GSM185025", "GSM185026", "GSM185027", "GSM185028" ], "type": "protocol", "id": "GDS3001_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3001", "version": 1.0, "instances": "14", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3001.tab", "compression": "gz" } ], [ [ "GDS3002.tab" ], { "title": "Histone deacetylase inhibitors effect on osteoblast differentiation", "description": "Analysis of MC3T3-E1 preosteoblasts treated with the histone deacetylase inhibitor (HDI) trichostatin A, MS-275, or valproic acid for 18 hours under osteogenic conditions. HDIs accelerate osteoblast maturation. Results provide insight into molecular mechanisms underlying osteoblast differentiation.", "type": "Expression profiling by array", "pubmed_id": "17925016", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE9247", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3002", "description": "control", "sample_id": [ "GSM234794", "GSM234795", "GSM234796", "GSM234797" ], "type": "agent", "id": "GDS3002_1" }, { "dataset_id": "GDS3002", "description": "MS-275", "sample_id": [ "GSM234798", "GSM234799", "GSM234800", "GSM234801" ], "type": "agent", "id": "GDS3002_2" }, { "dataset_id": "GDS3002", "description": "trichostatin A", "sample_id": [ "GSM234802", "GSM234803", "GSM234804" ], "type": "agent", "id": "GDS3002_3" }, { "dataset_id": "GDS3002", "description": "valproic acid", "sample_id": [ "GSM234805", "GSM234806", "GSM234807", "GSM234808" ], "type": "agent", "id": "GDS3002_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3002", "version": 1.0, "instances": "15", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3002.tab", "compression": "gz" } ], [ [ "GDS3003.tab" ], { "title": "House dust mite extract effect on a bronchial epithelial cell line", "description": "Analysis of H292 bronchial epithelial cells exposed to house dust mite (HDM) extract. More than just a physical barrier, epithelium can produce mediators in response to pathogens and allergens. Results provide insight into the nature of the response of bronchial epithelial cells to HDM allergen.", "type": "Expression profiling by array", "pubmed_id": "17919147", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9151", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3003", "description": "control", "sample_id": [ "GSM231254", "GSM231255", "GSM231256" ], "type": "agent", "id": "GDS3003_1" }, { "dataset_id": "GDS3003", "description": "house dust mite extract", "sample_id": [ "GSM231257", "GSM231258", "GSM231259" ], "type": "agent", "id": "GDS3003_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3003", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3003.tab", "compression": "gz" } ], [ [ "GDS3004.tab" ], { "title": "Heat stress effect on an epithelial cell line", "description": "Analysis of HEp2 epithelial cells subjected to heat stress at temperatures of 37 to 40 degrees C. Results provide insight into the regulatory pathways that control the response to heat stress.", "type": "Expression profiling by array", "pubmed_id": "17885648", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE7458", "order": "ordered", "update_date": "Oct 17 2007", "subsets": [ { "dataset_id": "GDS3004", "description": "37 C", "sample_id": [ "GSM180460", "GSM180463", "GSM180464" ], "type": "temperature", "id": "GDS3004_1" }, { "dataset_id": "GDS3004", "description": "40 C", "sample_id": [ "GSM180465", "GSM180468" ], "type": "temperature", "id": "GDS3004_2" }, { "dataset_id": "GDS3004", "description": "41 C", "sample_id": [ "GSM180474", "GSM180477", "GSM180483" ], "type": "temperature", "id": "GDS3004_3" }, { "dataset_id": "GDS3004", "description": "42 C", "sample_id": [ "GSM180494", "GSM180501" ], "type": "temperature", "id": "GDS3004_4" }, { "dataset_id": "GDS3004", "description": "43 C", "sample_id": [ "GSM180458", "GSM180512", "GSM180520" ], "type": "temperature", "id": "GDS3004_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3004", "version": 1.0, "instances": "13", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3004.tab", "compression": "gz" } ], [ [ "GDS3005.tab" ], { "title": "Macrophage response to interleukins 1 and 6", "description": "Analysis of cultured monocyte-derived macrophages (MDM) stimulated with interleukin (IL) 1 or IL-6 for 4 hours. Cytokines IL-1 and IL-6 are not only produced by macrophages but also affect the cells in an autocrine manner. Results provide insight into IL-1 and IL-6 responsive genes in MDMs.", "type": "Expression profiling by array", "pubmed_id": "18498781", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE8515", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3005", "description": "control", "sample_id": [ "GSM211500", "GSM211501", "GSM211502", "GSM211503", "GSM211504" ], "type": "agent", "id": "GDS3005_1" }, { "dataset_id": "GDS3005", "description": "interleukin 1", "sample_id": [ "GSM211505", "GSM211506", "GSM211507", "GSM211508", "GSM211509" ], "type": "agent", "id": "GDS3005_2" }, { "dataset_id": "GDS3005", "description": "interleukin 6", "sample_id": [ "GSM211510", "GSM211511", "GSM211512", "GSM211513", "GSM211514" ], "type": "agent", "id": "GDS3005_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3005", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3005.tab", "compression": "gz" } ], [ [ "GDS3006.tab" ], { "title": "Primordial ovarian follicle development", "description": "Analysis of ovaries with unassembled, primordial, and primary follicles. Abnormal primordial follicle development can cause pathologies such as premature ovarian failure. Results provide insight into molecular mechanisms underlying primordial follicle assembly and transition to primary follicles.", "type": "Expression profiling by array", "pubmed_id": "15371273", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9300", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3006", "description": "unassembled follicles", "sample_id": [ "GSM237013", "GSM237014" ], "type": "development stage", "id": "GDS3006_1" }, { "dataset_id": "GDS3006", "description": "primordial follicles", "sample_id": [ "GSM237015", "GSM237016" ], "type": "development stage", "id": "GDS3006_2" }, { "dataset_id": "GDS3006", "description": "primary follicles", "sample_id": [ "GSM237017", "GSM237018" ], "type": "development stage", "id": "GDS3006_3" }, { "dataset_id": "GDS3006", "description": "dissected PD 0 ovaries", "sample_id": [ "GSM237013", "GSM237014" ], "type": "protocol", "id": "GDS3006_4" }, { "dataset_id": "GDS3006", "description": "dissected PD 0 ovaries, cultured for 1 wk", "sample_id": [ "GSM237017", "GSM237018" ], "type": "protocol", "id": "GDS3006_5" }, { "dataset_id": "GDS3006", "description": "dissected PD 4 ovaries", "sample_id": [ "GSM237015", "GSM237016" ], "type": "protocol", "id": "GDS3006_6" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3006", "version": 1.0, "instances": "6", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3006.tab", "compression": "gz" } ], [ [ "GDS3007.tab" ], { "title": "Kaposi's sarcoma-associated herpesvirus microRNA-K12-11 expression", "description": "Analysis of cells expressing microRNA (miR) K12-11 from Kaposi's sarcoma-associated herpesvirus. miR-K12-11 shares sequence homology with hsa-miR-155, a miRNA up-regulated in lymphomas and important in B cell development. Results provide insight into the biological activity of miR-K12-11.", "type": "Expression profiling by array", "pubmed_id": "17881434", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9264", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3007", "description": "control", "sample_id": [ "GSM235046", "GSM235047", "GSM235048", "GSM235049" ], "type": "protocol", "id": "GDS3007_1" }, { "dataset_id": "GDS3007", "description": "miR-155 expression", "sample_id": [ "GSM235038", "GSM235039", "GSM235040", "GSM235041" ], "type": "protocol", "id": "GDS3007_2" }, { "dataset_id": "GDS3007", "description": "miR-K12-11 expression", "sample_id": [ "GSM235042", "GSM235043", "GSM235044", "GSM235045" ], "type": "protocol", "id": "GDS3007_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3007", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3007.tab", "compression": "gz" } ], [ [ "GDS3008.tab" ], { "title": "Hedgehog-induced medulloblastoma model (MG-430A)", "description": "Analysis of medulloblastoma tumors formed in transgenics by expressing an activated form of Smoothened (Smo). Expression of the activated Smo transmembrane protein results in activation of Hh signaling. Results provide insight into the molecular mechanisms underlying Hh-related tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE9299", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3008", "description": "control", "sample_id": [ "GSM236989", "GSM236990" ], "type": "disease state", "id": "GDS3008_1" }, { "dataset_id": "GDS3008", "description": "medulloblastoma", "sample_id": [ "GSM236991", "GSM236992", "GSM236993" ], "type": "disease state", "id": "GDS3008_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3008", "version": 1.0, "instances": "5", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3008.tab", "compression": "gz" } ], [ [ "GDS3009.tab" ], { "title": "Hedgehog-induced medulloblastoma model (MG-430B)", "description": "Analysis of medulloblastoma tumors formed in transgenics by expressing an activated form of Smoothened (Smo). Expression of the activated Smo transmembrane protein results in activation of Hh signaling. Results provide insight into the molecular mechanisms underlying Hh-related tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE9299", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3009", "description": "control", "sample_id": [ "GSM236994", "GSM236995" ], "type": "disease state", "id": "GDS3009_1" }, { "dataset_id": "GDS3009", "description": "medulloblastoma", "sample_id": [ "GSM236996", "GSM236997", "GSM236998" ], "type": "disease state", "id": "GDS3009_2" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS3009", "version": 1.0, "instances": "5", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3009.tab", "compression": "gz" } ], [ [ "GDS301.tab" ], { "title": "Ligand screen in B cells: Epstein Barr virus-induced molecule-1", "description": "Temporal analysis of effects induced by 10 nM ELC (CCL19; MIP3b) in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE380", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS301", "description": "30 minute", "sample_id": [ "GSM5544", "GSM5545", "GSM5546" ], "type": "time", "id": "GDS301_1" }, { "dataset_id": "GDS301", "description": "60 minute", "sample_id": [ "GSM5547", "GSM5548", "GSM5549" ], "type": "time", "id": "GDS301_2" }, { "dataset_id": "GDS301", "description": "120 minute", "sample_id": [ "GSM5550", "GSM5551", "GSM5552" ], "type": "time", "id": "GDS301_3" }, { "dataset_id": "GDS301", "description": "240 minute", "sample_id": [ "GSM5556", "GSM5558" ], "type": "time", "id": "GDS301_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS301", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS301.tab", "compression": "gz" } ], [ [ "GDS3010.tab" ], { "title": "PLAGL2 transcription factor deficiency effect on the embryonic small intestine", "description": "Analysis of small intestines from 18.5 days post conception embryos lacking the transcription factor Pleomorphic adenoma gene-like 2 (PLAGL2). Results provide insight into molecular mechanisms underlying the defective lipid absorption observed in PlagL2-/- mutant intestine.", "type": "Expression profiling by array", "pubmed_id": "17983586", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE9123", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3010", "description": "wild type", "sample_id": [ "GSM230945", "GSM230946", "GSM230947", "GSM230948" ], "type": "genotype/variation", "id": "GDS3010_1" }, { "dataset_id": "GDS3010", "description": "PLAGL2 null", "sample_id": [ "GSM230949", "GSM230950", "GSM230951", "GSM230952" ], "type": "genotype/variation", "id": "GDS3010_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3010", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3010.tab", "compression": "gz" } ], [ [ "GDS3011.tab" ], { "title": "Interleukin-1 effect on epidermal keratinocytes: time course", "description": "Analysis of epidermal keratinocytes at various time points up to 48 hours post-interleukin-1 (IL-1) treatment. IL-1 is a proinflammatory and immunomodulatory cytokine that plays a role in inflammatory diseases of the skin. Results provide insight into gene products that mediate the effects of IL-1.", "type": "Expression profiling by array", "pubmed_id": "17941080", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE9120", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3011", "description": "IL-1", "sample_id": [ "GSM230879", "GSM230882", "GSM230884", "GSM230914" ], "type": "agent", "id": "GDS3011_1" }, { "dataset_id": "GDS3011", "description": "control", "sample_id": [ "GSM230880", "GSM230881", "GSM230883", "GSM230913" ], "type": "agent", "id": "GDS3011_2" }, { "dataset_id": "GDS3011", "description": "1 h", "sample_id": [ "GSM230879", "GSM230880" ], "type": "time", "id": "GDS3011_3" }, { "dataset_id": "GDS3011", "description": "4 h", "sample_id": [ "GSM230881", "GSM230882" ], "type": "time", "id": "GDS3011_4" }, { "dataset_id": "GDS3011", "description": "24 h", "sample_id": [ "GSM230883", "GSM230884" ], "type": "time", "id": "GDS3011_5" }, { "dataset_id": "GDS3011", "description": "48 h", "sample_id": [ "GSM230913", "GSM230914" ], "type": "time", "id": "GDS3011_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3011", "version": 1.0, "instances": "8", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3011.tab", "compression": "gz" } ], [ [ "GDS3012.tab" ], { "title": "DNA methylation inhibitor effect on melanoma cell lines", "description": "Analysis of six melanoma cell lines treated with the DNA methylation inhibitor 5-aza-2'-deoxycytidine (5AzadC). Results provide insight into the role of epigenetic silencing by DNA methylation in the pathogenesis of melanoma.", "type": "Expression profiling by array", "pubmed_id": "17145863", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE9118", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3012", "description": "normal", "sample_id": [ "GSM230899", "GSM230900" ], "type": "disease state", "id": "GDS3012_1" }, { "dataset_id": "GDS3012", "description": "melanoma", "sample_id": [ "GSM230901", "GSM230902", "GSM230903", "GSM230904", "GSM230905", "GSM230906", "GSM230907", "GSM230908", "GSM230909", "GSM230910", "GSM230911", "GSM230912" ], "type": "disease state", "id": "GDS3012_2" }, { "dataset_id": "GDS3012", "description": "untreated", "sample_id": [ "GSM230899", "GSM230901", "GSM230903", "GSM230905", "GSM230907", "GSM230909", "GSM230911" ], "type": "agent", "id": "GDS3012_3" }, { "dataset_id": "GDS3012", "description": "5-aza-2'-deoxycytidine", "sample_id": [ "GSM230900", "GSM230902", "GSM230904", "GSM230906", "GSM230908", "GSM230910", "GSM230912" ], "type": "agent", "id": "GDS3012_4" }, { "dataset_id": "GDS3012", "description": "melanocyte", "sample_id": [ "GSM230899", "GSM230900" ], "type": "cell line", "id": "GDS3012_5" }, { "dataset_id": "GDS3012", "description": "MelJuSo", "sample_id": [ "GSM230901", "GSM230902" ], "type": "cell line", "id": "GDS3012_6" }, { "dataset_id": "GDS3012", "description": "UACC903", "sample_id": [ "GSM230903", "GSM230904" ], "type": "cell line", "id": "GDS3012_7" }, { "dataset_id": "GDS3012", "description": "C8161", "sample_id": [ "GSM230905", "GSM230906" ], "type": "cell line", "id": "GDS3012_8" }, { "dataset_id": "GDS3012", "description": "Neo6 C8161", "sample_id": [ "GSM230907", "GSM230908" ], "type": "cell line", "id": "GDS3012_9" }, { "dataset_id": "GDS3012", "description": "WM1205", "sample_id": [ "GSM230909", "GSM230910" ], "type": "cell line", "id": "GDS3012_10" }, { "dataset_id": "GDS3012", "description": "WM35", "sample_id": [ "GSM230911", "GSM230912" ], "type": "cell line", "id": "GDS3012_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3012", "version": 1.0, "instances": "14", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3012.tab", "compression": "gz" } ], [ [ "GDS3014.tab" ], { "title": "Mmi1 RNA-binding protein mutant", "description": "Analysis of mmi1 mutant cells. Mmi1 binds to meiosis-specific mRNAs that contain the DSR region. DSR is a cis-acting element that allows selective removal of the meiosis-specific mRNAs during vegetative growth. Results provide insight into the molecular regulation of meiosis.", "type": "Expression profiling by array", "pubmed_id": "16823445", "platform": "GPL2849", "platform_organism": "Schizosaccharomyces pombe", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5188", "sample_organism": "Schizosaccharomyces pombe", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE3314", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3014", "description": "wild type", "sample_id": [ "GSM74501", "GSM74503" ], "type": "genotype/variation", "id": "GDS3014_1" }, { "dataset_id": "GDS3014", "description": "mmi1 mutant", "sample_id": [ "GSM74502", "GSM74504" ], "type": "genotype/variation", "id": "GDS3014_2" } ], "taxid": "4896", "genes": 4935, "aggregation_function": "mean", "name": "GDS3014", "version": 1.0, "instances": "4", "variables": 4937, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3014.tab", "compression": "gz" } ], [ [ "GDS3017.tab" ], { "title": "Cervical cancer response to chemoradiotherapy", "description": "Analysis of cervical cancer biopsy samples from patients receiving radiotherapy alone or radiotherapy plus concomitant chemotherapy with cisplatin (CRT). Results provide insight into the molecular mechanisms underlying the therapeutic response to CRT.", "type": "Expression profiling by array", "pubmed_id": "17582213", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "156", "value_type": "count", "reference_series": "GSE3578", "order": "none", "update_date": "Oct 24 2008", "subsets": [ { "dataset_id": "GDS3017", "description": "radiotherapy", "sample_id": [ "GSM82285", "GSM82286", "GSM82287", "GSM82288", "GSM82295", "GSM82296", "GSM82307", "GSM82308", "GSM82311", "GSM82312", "GSM82313", "GSM82314", "GSM82315", "GSM82316", "GSM82328", "GSM82329", "GSM82331", "GSM82337", "GSM82338", "GSM82340", "GSM82341", "GSM82350", "GSM82368", "GSM82375", "GSM82376", "GSM82379", "GSM128565", "GSM128566", "GSM128569", "GSM128570", "GSM128573", "GSM128574", "GSM128585", "GSM128586", "GSM128593", "GSM128594", "GSM128597", "GSM128598", "GSM128601", "GSM128602", "GSM82293", "GSM82294", "GSM82297", "GSM82298", "GSM82309", "GSM82310", "GSM82322", "GSM82324", "GSM82326", "GSM82332", "GSM82343", "GSM82344", "GSM82348", "GSM82352", "GSM82354", "GSM82355", "GSM82357", "GSM82358", "GSM82362", "GSM82363", "GSM82366", "GSM82372", "GSM82373", "GSM82374", "GSM82377", "GSM82378", "GSM128567", "GSM128568", "GSM128571", "GSM128572", "GSM128575", "GSM128576", "GSM128587", "GSM128588", "GSM128595", "GSM128596", "GSM128599", "GSM128600", "GSM128603", "GSM128604" ], "type": "agent", "id": "GDS3017_1" }, { "dataset_id": "GDS3017", "description": "chemoradiotherapy", "sample_id": [ "GSM82284", "GSM82289", "GSM82290", "GSM82291", "GSM82292", "GSM82317", "GSM82318", "GSM82319", "GSM82320", "GSM82321", "GSM82323", "GSM82325", "GSM82327", "GSM82330", "GSM82336", "GSM82342", "GSM82351", "GSM82353", "GSM82361", "GSM82371", "GSM128492", "GSM128493", "GSM128496", "GSM128497", "GSM128504", "GSM128505", "GSM128509", "GSM128510", "GSM128525", "GSM128526", "GSM128529", "GSM128530", "GSM128533", "GSM128534", "GSM128541", "GSM128542", "GSM128557", "GSM128558", "GSM82303", "GSM82304", "GSM82305", "GSM82306", "GSM82333", "GSM82334", "GSM82335", "GSM82339", "GSM82345", "GSM82346", "GSM82347", "GSM82349", "GSM82356", "GSM82359", "GSM82360", "GSM82364", "GSM82365", "GSM82367", "GSM82369", "GSM82370", "GSM128494", "GSM128495", "GSM128498", "GSM128499", "GSM128506", "GSM128507", "GSM128511", "GSM128512", "GSM128527", "GSM128528", "GSM128531", "GSM128532", "GSM128535", "GSM128536", "GSM128543", "GSM128544", "GSM128559", "GSM128560" ], "type": "agent", "id": "GDS3017_2" }, { "dataset_id": "GDS3017", "description": "prior to treatment", "sample_id": [ "GSM82285", "GSM82286", "GSM82287", "GSM82288", "GSM82295", "GSM82296", "GSM82307", "GSM82308", "GSM82311", "GSM82312", "GSM82313", "GSM82314", "GSM82315", "GSM82316", "GSM82328", "GSM82329", "GSM82331", "GSM82337", "GSM82338", "GSM82340", "GSM82341", "GSM82350", "GSM82368", "GSM82375", "GSM82376", "GSM82379", "GSM128565", "GSM128566", "GSM128569", "GSM128570", "GSM128573", "GSM128574", "GSM128585", "GSM128586", "GSM128593", "GSM128594", "GSM128597", "GSM128598", "GSM128601", "GSM128602", "GSM82284", "GSM82289", "GSM82290", "GSM82291", "GSM82292", "GSM82317", "GSM82318", "GSM82319", "GSM82320", "GSM82321", "GSM82323", "GSM82325", "GSM82327", "GSM82330", "GSM82336", "GSM82342", "GSM82351", "GSM82353", "GSM82361", "GSM82371", "GSM128492", "GSM128493", "GSM128496", "GSM128497", "GSM128504", "GSM128505", "GSM128509", "GSM128510", "GSM128525", "GSM128526", "GSM128529", "GSM128530", "GSM128533", "GSM128534", "GSM128541", "GSM128542", "GSM128557", "GSM128558" ], "type": "protocol", "id": "GDS3017_3" }, { "dataset_id": "GDS3017", "description": "during treatment", "sample_id": [ "GSM82293", "GSM82294", "GSM82297", "GSM82298", "GSM82309", "GSM82310", "GSM82322", "GSM82324", "GSM82326", "GSM82332", "GSM82343", "GSM82344", "GSM82348", "GSM82352", "GSM82354", "GSM82355", "GSM82357", "GSM82358", "GSM82362", "GSM82363", "GSM82366", "GSM82372", "GSM82373", "GSM82374", "GSM82377", "GSM82378", "GSM128567", "GSM128568", "GSM128571", "GSM128572", "GSM128575", "GSM128576", "GSM128587", "GSM128588", "GSM128595", "GSM128596", "GSM128599", "GSM128600", "GSM128603", "GSM128604", "GSM82303", "GSM82304", "GSM82305", "GSM82306", "GSM82333", "GSM82334", "GSM82335", "GSM82339", "GSM82345", "GSM82346", "GSM82347", "GSM82349", "GSM82356", "GSM82359", "GSM82360", "GSM82364", "GSM82365", "GSM82367", "GSM82369", "GSM82370", "GSM128494", "GSM128495", "GSM128498", "GSM128499", "GSM128506", "GSM128507", "GSM128511", "GSM128512", "GSM128527", "GSM128528", "GSM128531", "GSM128532", "GSM128535", "GSM128536", "GSM128543", "GSM128544", "GSM128559", "GSM128560" ], "type": "protocol", "id": "GDS3017_4" }, { "dataset_id": "GDS3017", "description": "patient 275", "sample_id": [ "GSM82313", "GSM82314", "GSM82348", "GSM82366" ], "type": "individual", "id": "GDS3017_5" }, { "dataset_id": "GDS3017", "description": "patient 380", "sample_id": [ "GSM82322", "GSM82331", "GSM82338", "GSM82352" ], "type": "individual", "id": "GDS3017_6" }, { "dataset_id": "GDS3017", "description": "patient 445", "sample_id": [ "GSM82315", "GSM82316", "GSM82332", "GSM82357" ], "type": "individual", "id": "GDS3017_7" }, { "dataset_id": "GDS3017", "description": "patient 783", "sample_id": [ "GSM82284", "GSM82321", "GSM82349", "GSM82367" ], "type": "individual", "id": "GDS3017_8" }, { "dataset_id": "GDS3017", "description": "patient 1243", "sample_id": [ "GSM82350", "GSM82354", "GSM82368", "GSM82372" ], "type": "individual", "id": "GDS3017_9" }, { "dataset_id": "GDS3017", "description": "patient 1246", "sample_id": [ "GSM82342", "GSM82346", "GSM82361", "GSM82364" ], "type": "individual", "id": "GDS3017_10" }, { "dataset_id": "GDS3017", "description": "patient 1250", "sample_id": [ "GSM82345", "GSM82351", "GSM82360", "GSM82371" ], "type": "individual", "id": "GDS3017_11" }, { "dataset_id": "GDS3017", "description": "patient 1252", "sample_id": [ "GSM82330", "GSM82335", "GSM82336", "GSM82339" ], "type": "individual", "id": "GDS3017_12" }, { "dataset_id": "GDS3017", "description": "patient 1353", "sample_id": [ "GSM128492", "GSM128493", "GSM128494", "GSM128495" ], "type": "individual", "id": "GDS3017_13" }, { "dataset_id": "GDS3017", "description": "patient 1356", "sample_id": [ "GSM82323", "GSM82353", "GSM82356", "GSM82359" ], "type": "individual", "id": "GDS3017_14" }, { "dataset_id": "GDS3017", "description": "patient 1581", "sample_id": [ "GSM82317", "GSM82318", "GSM82347", "GSM82365" ], "type": "individual", "id": "GDS3017_15" }, { "dataset_id": "GDS3017", "description": "patient1583", "sample_id": [ "GSM128496", "GSM128497", "GSM128498", "GSM128499" ], "type": "individual", "id": "GDS3017_16" }, { "dataset_id": "GDS3017", "description": "patient 1584", "sample_id": [ "GSM82328", "GSM82340", "GSM82343", "GSM82362" ], "type": "individual", "id": "GDS3017_17" }, { "dataset_id": "GDS3017", "description": "patient 1587", "sample_id": [ "GSM82319", "GSM82320", "GSM82333", "GSM82369" ], "type": "individual", "id": "GDS3017_18" }, { "dataset_id": "GDS3017", "description": "patient 1590", "sample_id": [ "GSM128565", "GSM128566", "GSM128567", "GSM128568" ], "type": "individual", "id": "GDS3017_19" }, { "dataset_id": "GDS3017", "description": "patient 1599", "sample_id": [ "GSM82329", "GSM82341", "GSM82355", "GSM82358" ], "type": "individual", "id": "GDS3017_20" }, { "dataset_id": "GDS3017", "description": "patient 1676", "sample_id": [ "GSM128504", "GSM128505", "GSM128506", "GSM128507" ], "type": "individual", "id": "GDS3017_21" }, { "dataset_id": "GDS3017", "description": "patient 1677", "sample_id": [ "GSM128509", "GSM128510", "GSM128511", "GSM128512" ], "type": "individual", "id": "GDS3017_22" }, { "dataset_id": "GDS3017", "description": "patient 1687", "sample_id": [ "GSM82325", "GSM82327", "GSM82334", "GSM82370" ], "type": "individual", "id": "GDS3017_23" }, { "dataset_id": "GDS3017", "description": "patient 1688", "sample_id": [ "GSM128569", "GSM128570", "GSM128571", "GSM128572" ], "type": "individual", "id": "GDS3017_24" }, { "dataset_id": "GDS3017", "description": "patient 1690", "sample_id": [ "GSM128573", "GSM128574", "GSM128575", "GSM128576" ], "type": "individual", "id": "GDS3017_25" }, { "dataset_id": "GDS3017", "description": "patient 1842", "sample_id": [ "GSM82295", "GSM82296", "GSM82324", "GSM82326" ], "type": "individual", "id": "GDS3017_26" }, { "dataset_id": "GDS3017", "description": "patient 1844", "sample_id": [ "GSM82337", "GSM82344", "GSM82363", "GSM82379" ], "type": "individual", "id": "GDS3017_27" }, { "dataset_id": "GDS3017", "description": "patient 1988", "sample_id": [ "GSM82285", "GSM82286", "GSM82293", "GSM82294" ], "type": "individual", "id": "GDS3017_28" }, { "dataset_id": "GDS3017", "description": "patient 1989", "sample_id": [ "GSM82287", "GSM82288", "GSM82297", "GSM82298" ], "type": "individual", "id": "GDS3017_29" }, { "dataset_id": "GDS3017", "description": "patient 1990", "sample_id": [ "GSM82311", "GSM82312", "GSM82373", "GSM82374" ], "type": "individual", "id": "GDS3017_30" }, { "dataset_id": "GDS3017", "description": "patient 1993", "sample_id": [ "GSM82375", "GSM82376", "GSM82377", "GSM82378" ], "type": "individual", "id": "GDS3017_31" }, { "dataset_id": "GDS3017", "description": "patient 2030", "sample_id": [ "GSM82289", "GSM82291", "GSM82305", "GSM82306" ], "type": "individual", "id": "GDS3017_32" }, { "dataset_id": "GDS3017", "description": "patient 2037", "sample_id": [ "GSM82290", "GSM82292", "GSM82303", "GSM82304" ], "type": "individual", "id": "GDS3017_33" }, { "dataset_id": "GDS3017", "description": "patient 2314", "sample_id": [ "GSM82307", "GSM82308", "GSM82309", "GSM82310" ], "type": "individual", "id": "GDS3017_34" }, { "dataset_id": "GDS3017", "description": "patient 2315", "sample_id": [ "GSM128585", "GSM128586", "GSM128587", "GSM128588" ], "type": "individual", "id": "GDS3017_35" }, { "dataset_id": "GDS3017", "description": "patient 2320", "sample_id": [ "GSM128525", "GSM128526", "GSM128527", "GSM128528" ], "type": "individual", "id": "GDS3017_36" }, { "dataset_id": "GDS3017", "description": "patient 2509", "sample_id": [ "GSM128529", "GSM128530", "GSM128531", "GSM128532" ], "type": "individual", "id": "GDS3017_37" }, { "dataset_id": "GDS3017", "description": "patient 2512", "sample_id": [ "GSM128533", "GSM128534", "GSM128535", "GSM128536" ], "type": "individual", "id": "GDS3017_38" }, { "dataset_id": "GDS3017", "description": "patient 2518", "sample_id": [ "GSM128593", "GSM128594", "GSM128595", "GSM128596" ], "type": "individual", "id": "GDS3017_39" }, { "dataset_id": "GDS3017", "description": "patient 2774", "sample_id": [ "GSM128541", "GSM128542", "GSM128543", "GSM128544" ], "type": "individual", "id": "GDS3017_40" }, { "dataset_id": "GDS3017", "description": "patient 2788", "sample_id": [ "GSM128597", "GSM128598", "GSM128599", "GSM128600" ], "type": "individual", "id": "GDS3017_41" }, { "dataset_id": "GDS3017", "description": "patient 2791", "sample_id": [ "GSM128557", "GSM128558", "GSM128559", "GSM128560" ], "type": "individual", "id": "GDS3017_42" }, { "dataset_id": "GDS3017", "description": "patient 2900", "sample_id": [ "GSM128601", "GSM128602", "GSM128603", "GSM128604" ], "type": "individual", "id": "GDS3017_43" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS3017", "version": 1.0, "instances": "156", "variables": 45750, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3017.tab", "compression": "gz" } ], [ [ "GDS3018.tab" ], { "title": "Cardiac hypertrophy to overt heart failure transition model", "description": "Analysis of left ventricle (LV) biopsies of hypertrophic hearts from homozygous hypertensive transgenics TGR(mRen-2) 27 (Ren-2) that either progressed to heart failure (HF) or remained compensated. Results provide insight into molecular changes that occur during the hypertrophy-to-HF transition.", "type": "Expression profiling by array", "pubmed_id": "17485520", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE4286", "order": "none", "update_date": "Oct 23 2008", "subsets": [ { "dataset_id": "GDS3018", "description": "non-hypertensive", "sample_id": [ "GSM180079", "GSM180082", "GSM180085", "GSM180089" ], "type": "strain", "id": "GDS3018_1" }, { "dataset_id": "GDS3018", "description": "hypertensive", "sample_id": [ "GSM178755", "GSM180057", "GSM180059", "GSM180061", "GSM180062", "GSM180065", "GSM180068", "GSM180069", "GSM180073", "GSM180075" ], "type": "strain", "id": "GDS3018_2" }, { "dataset_id": "GDS3018", "description": "control", "sample_id": [ "GSM180079", "GSM180082", "GSM180085", "GSM180089" ], "type": "disease state", "id": "GDS3018_3" }, { "dataset_id": "GDS3018", "description": "compensated", "sample_id": [ "GSM178755", "GSM180057", "GSM180059", "GSM180061", "GSM180062", "GSM180065" ], "type": "disease state", "id": "GDS3018_4" }, { "dataset_id": "GDS3018", "description": "failure", "sample_id": [ "GSM180068", "GSM180069", "GSM180073", "GSM180075" ], "type": "disease state", "id": "GDS3018_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3018", "version": 1.0, "instances": "14", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3018.tab", "compression": "gz" } ], [ [ "GDS302.tab" ], { "title": "Ligand screen in B cells: formyl-Met-Leu-Phe", "description": "Temporal analysis of effects induced by 0.1 mM formyl-Met-Leu-Phe in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE381", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS302", "description": "30 minute", "sample_id": [ "GSM5567", "GSM5568", "GSM5569" ], "type": "time", "id": "GDS302_1" }, { "dataset_id": "GDS302", "description": "60 minute", "sample_id": [ "GSM5570", "GSM5571", "GSM5572" ], "type": "time", "id": "GDS302_2" }, { "dataset_id": "GDS302", "description": "120 minute", "sample_id": [ "GSM5573", "GSM5574" ], "type": "time", "id": "GDS302_3" }, { "dataset_id": "GDS302", "description": "240 minute", "sample_id": [ "GSM5575", "GSM5576", "GSM5577" ], "type": "time", "id": "GDS302_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS302", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS302.tab", "compression": "gz" } ], [ [ "GDS3023.tab" ], { "title": "Gonadotropin-releasing hormone effect on pituitary organ cultures", "description": "Analysis of pituitary organ cultures treated with 10 nM gonadotropin-releasing hormone (GnRH) for 6 hours. GnRH is a decapeptide hypothalamic hormone that acts upon GnRH receptors in the pituitary. Results provide insight into GnRH-responsive genes in pituitary organ cultures.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4865", "order": "none", "update_date": "Oct 24 2008", "subsets": [ { "dataset_id": "GDS3023", "description": "control", "sample_id": [ "GSM109337", "GSM109338", "GSM109339" ], "type": "agent", "id": "GDS3023_1" }, { "dataset_id": "GDS3023", "description": "gonadotropin-releasing hormone", "sample_id": [ "GSM109340", "GSM109341", "GSM109342" ], "type": "agent", "id": "GDS3023_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3023", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3023.tab", "compression": "gz" } ], [ [ "GDS3025.tab" ], { "title": "Bone morphogenetic protein 4 effect on a stem cell line", "description": "Analysis of C3H10T1/2 (10T1/2) stem cells committed to the adipocyte lineage by treatment with bone morphogenetic protein 4 (BMP-4), a member of the transforming growth factor-beta superfamily. Results provide insight into the molecular mechanisms underlying adipocyte commitment in a stem cell line.", "type": "Expression profiling by array", "pubmed_id": "17204246", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5921", "order": "none", "update_date": "Oct 29 2008", "subsets": [ { "dataset_id": "GDS3025", "description": "control", "sample_id": [ "GSM137327", "GSM137328", "GSM137329" ], "type": "agent", "id": "GDS3025_1" }, { "dataset_id": "GDS3025", "description": "bone morphenetic protein 4", "sample_id": [ "GSM137318", "GSM137325", "GSM137326" ], "type": "agent", "id": "GDS3025_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3025", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3025.tab", "compression": "gz" } ], [ [ "GDS3027.tab" ], { "title": "Early-early stage Duchenne muscular dystrophy: quadriceps", "description": "Analysis of skeletal muscles from 1.5 to 61 month old children with Duchenne muscular dystrophy (DMD). DMD is a degenerative skeletal muscle disease caused by mutations in the dystrophin gene. Results provide insight into the early phases of DMD pathogenesis and pathophysiology.", "type": "Expression profiling by array", "pubmed_id": "17264171", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "transformed count", "reference_series": "GSE6011", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3027", "description": "control", "sample_id": [ "GSM139501", "GSM139502", "GSM139503", "GSM139504", "GSM139505", "GSM139506", "GSM139507", "GSM139508", "GSM139509", "GSM139510", "GSM139511", "GSM139512", "GSM139513", "GSM139514" ], "type": "disease state", "id": "GDS3027_1" }, { "dataset_id": "GDS3027", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM139515", "GSM139516", "GSM139517", "GSM139518", "GSM139519", "GSM139520", "GSM139521", "GSM139522", "GSM139523", "GSM139524", "GSM139525", "GSM139526", "GSM139527", "GSM139528", "GSM139529", "GSM139530", "GSM139531", "GSM139532", "GSM139533", "GSM139534", "GSM139535", "GSM139536", "GSM139537" ], "type": "disease state", "id": "GDS3027_2" }, { "dataset_id": "GDS3027", "description": "male", "sample_id": [ "GSM139501", "GSM139504", "GSM139505", "GSM139506", "GSM139508", "GSM139509", "GSM139510", "GSM139511", "GSM139512", "GSM139513", "GSM139514", "GSM139515", "GSM139516", "GSM139517", "GSM139518", "GSM139519", "GSM139520", "GSM139521", "GSM139522", "GSM139523", "GSM139524", "GSM139525", "GSM139526", "GSM139527", "GSM139528", "GSM139529", "GSM139530", "GSM139531", "GSM139532", "GSM139533", "GSM139534", "GSM139535", "GSM139536", "GSM139537" ], "type": "gender", "id": "GDS3027_3" }, { "dataset_id": "GDS3027", "description": "female", "sample_id": [ "GSM139502", "GSM139503", "GSM139507" ], "type": "gender", "id": "GDS3027_4" }, { "dataset_id": "GDS3027", "description": "1.5 mo", "sample_id": [ "GSM139515" ], "type": "age", "id": "GDS3027_5" }, { "dataset_id": "GDS3027", "description": "2.5 mo", "sample_id": [ "GSM139516" ], "type": "age", "id": "GDS3027_6" }, { "dataset_id": "GDS3027", "description": "3 mo", "sample_id": [ "GSM139517", "GSM139518" ], "type": "age", "id": "GDS3027_7" }, { "dataset_id": "GDS3027", "description": "5 mo", "sample_id": [ "GSM139501", "GSM139519", "GSM139520" ], "type": "age", "id": "GDS3027_8" }, { "dataset_id": "GDS3027", "description": "6 mo", "sample_id": [ "GSM139502", "GSM139503", "GSM139504", "GSM139505", "GSM139521", "GSM139522" ], "type": "age", "id": "GDS3027_9" }, { "dataset_id": "GDS3027", "description": "7 mo", "sample_id": [ "GSM139506", "GSM139523" ], "type": "age", "id": "GDS3027_10" }, { "dataset_id": "GDS3027", "description": "8 mo", "sample_id": [ "GSM139507", "GSM139524", "GSM139525" ], "type": "age", "id": "GDS3027_11" }, { "dataset_id": "GDS3027", "description": "11 mo", "sample_id": [ "GSM139508", "GSM139526" ], "type": "age", "id": "GDS3027_12" }, { "dataset_id": "GDS3027", "description": "12 mo", "sample_id": [ "GSM139527", "GSM139528" ], "type": "age", "id": "GDS3027_13" }, { "dataset_id": "GDS3027", "description": "14 mo", "sample_id": [ "GSM139529", "GSM139530" ], "type": "age", "id": "GDS3027_14" }, { "dataset_id": "GDS3027", "description": "15 mo", "sample_id": [ "GSM139531" ], "type": "age", "id": "GDS3027_15" }, { "dataset_id": "GDS3027", "description": "18 mo", "sample_id": [ "GSM139509" ], "type": "age", "id": "GDS3027_16" }, { "dataset_id": "GDS3027", "description": "20 mo", "sample_id": [ "GSM139532", "GSM139533" ], "type": "age", "id": "GDS3027_17" }, { "dataset_id": "GDS3027", "description": "22 mo", "sample_id": [ "GSM139534" ], "type": "age", "id": "GDS3027_18" }, { "dataset_id": "GDS3027", "description": "28 mo", "sample_id": [ "GSM139535" ], "type": "age", "id": "GDS3027_19" }, { "dataset_id": "GDS3027", "description": "33 mo", "sample_id": [ "GSM139510" ], "type": "age", "id": "GDS3027_20" }, { "dataset_id": "GDS3027", "description": "36 mo", "sample_id": [ "GSM139511" ], "type": "age", "id": "GDS3027_21" }, { "dataset_id": "GDS3027", "description": "47 mo", "sample_id": [ "GSM139536" ], "type": "age", "id": "GDS3027_22" }, { "dataset_id": "GDS3027", "description": "50 mo", "sample_id": [ "GSM139512" ], "type": "age", "id": "GDS3027_23" }, { "dataset_id": "GDS3027", "description": "60 mo", "sample_id": [ "GSM139513" ], "type": "age", "id": "GDS3027_24" }, { "dataset_id": "GDS3027", "description": "61 mo", "sample_id": [ "GSM139537" ], "type": "age", "id": "GDS3027_25" }, { "dataset_id": "GDS3027", "description": "108 mo", "sample_id": [ "GSM139514" ], "type": "age", "id": "GDS3027_26" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3027", "version": 1.0, "instances": "37", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3027.tab", "compression": "gz" } ], [ [ "GDS3028.tab" ], { "title": "Age-related hearing loss model: cochlea", "description": "Analysis of cochleas of 7 and 36 week old DBA/2J animals. The DBA/2J animal suffers from age-related hearing loss (AHL), a progressive disease characterized by an age-associated loss of hair cells and spiral ganglion cells in the cochlea. Results provide insight into the molecular basis of AHL.", "type": "Expression profiling by array", "pubmed_id": "17964557", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6045", "order": "ordered", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3028", "description": "moderate hearing loss", "sample_id": [ "GSM140222", "GSM140223", "GSM140224" ], "type": "disease state", "id": "GDS3028_1" }, { "dataset_id": "GDS3028", "description": "severe hearing loss", "sample_id": [ "GSM140225", "GSM140226", "GSM140227" ], "type": "disease state", "id": "GDS3028_2" }, { "dataset_id": "GDS3028", "description": "7 wk", "sample_id": [ "GSM140222", "GSM140223", "GSM140224" ], "type": "age", "id": "GDS3028_3" }, { "dataset_id": "GDS3028", "description": "36 wk", "sample_id": [ "GSM140225", "GSM140226", "GSM140227" ], "type": "age", "id": "GDS3028_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3028", "version": 1.0, "instances": "6", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3028.tab", "compression": "gz" } ], [ [ "GDS3029.tab" ], { "title": "Small-cell lung carcinoma cell lines of varying sensitivity to a Bcl-2 antagonist", "description": "Analysis of small-cell lung carcinoma cell (SCLC) lines. Expression profiles compared to the cell lines' sensitivity to the Bcl-2 antagonist ABT-737 and chromosomal gains that include changes in Bcl-2 gene copy number. ABT-737 induces the regression of a fraction of SCLC solid tumors.", "type": "Expression profiling by array", "pubmed_id": "17426248", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "count", "reference_series": "GSE7097", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3029", "description": "ABT-737 resistant", "sample_id": [ "GSM170730", "GSM170731", "GSM170732", "GSM170733", "GSM170724", "GSM170725", "GSM170728" ], "type": "cell type", "id": "GDS3029_1" }, { "dataset_id": "GDS3029", "description": "ABT-737 sensitive", "sample_id": [ "GSM170706", "GSM170707", "GSM170708", "GSM170709", "GSM170710", "GSM170712", "GSM170713", "GSM170715", "GSM170716", "GSM170718", "GSM170719", "GSM170720", "GSM170721", "GSM170722", "GSM170726", "GSM170727", "GSM170735", "GSM170736", "GSM170737", "GSM170738", "GSM170740", "GSM170741", "GSM170742", "GSM170743", "GSM170745", "GSM170746", "GSM170748" ], "type": "cell type", "id": "GDS3029_2" }, { "dataset_id": "GDS3029", "description": "Bcl-2 copy lt 2", "sample_id": [ "GSM170732", "GSM170733", "GSM170724", "GSM170725", "GSM170728", "GSM170738", "GSM170740", "GSM170741" ], "type": "genotype/variation", "id": "GDS3029_3" }, { "dataset_id": "GDS3029", "description": "Bcl-2 copy ge 2 and lt 3", "sample_id": [ "GSM170745", "GSM170746", "GSM170748", "GSM170735", "GSM170736", "GSM170737", "GSM170742", "GSM170743", "GSM170710", "GSM170712", "GSM170730", "GSM170731" ], "type": "genotype/variation", "id": "GDS3029_4" }, { "dataset_id": "GDS3029", "description": "Bcl-2 copy ge 3 and lt 4", "sample_id": [ "GSM170721", "GSM170722", "GSM170708", "GSM170709" ], "type": "genotype/variation", "id": "GDS3029_5" }, { "dataset_id": "GDS3029", "description": "Bcl-2 copy ge 4", "sample_id": [ "GSM170713", "GSM170715", "GSM170719", "GSM170720", "GSM170716", "GSM170718", "GSM170726", "GSM170727", "GSM170706", "GSM170707" ], "type": "genotype/variation", "id": "GDS3029_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3029", "version": 1.0, "instances": "34", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3029.tab", "compression": "gz" } ], [ [ "GDS303.tab" ], { "title": "Ligand screen in B cells: growth hormone releasing hormone", "description": "Temporal analysis of effects induced by 100 nM growth hormone releasing hormone in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE382", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS303", "description": "30 minute", "sample_id": [ "GSM5578", "GSM5579", "GSM5580" ], "type": "time", "id": "GDS303_1" }, { "dataset_id": "GDS303", "description": "60 minute", "sample_id": [ "GSM5581", "GSM5582", "GSM5583" ], "type": "time", "id": "GDS303_2" }, { "dataset_id": "GDS303", "description": "120 minute", "sample_id": [ "GSM5584", "GSM5585", "GSM5586" ], "type": "time", "id": "GDS303_3" }, { "dataset_id": "GDS303", "description": "240 minute", "sample_id": [ "GSM5587", "GSM5588", "GSM5589" ], "type": "time", "id": "GDS303_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS303", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS303.tab", "compression": "gz" } ], [ [ "GDS3030.tab" ], { "title": "Saccharomyces cerevisiae response to shift from anaerobic to aerobic growth: time course", "description": "Analysis of Saccharomyces cerevisiae cultures at various time points up to 120 minutes following a shift from anaerobic to aerobic growth. Results provide insight into the molecular mechanisms underlying the adaptive response of shifted yeast cells to oxidative stress.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL4873", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted oligonucleotide", "feature_count": "6495", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE7140", "order": "ordered", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3030", "description": "0 min", "sample_id": [ "GSM172052" ], "type": "time", "id": "GDS3030_1" }, { "dataset_id": "GDS3030", "description": "5 min", "sample_id": [ "GSM172053" ], "type": "time", "id": "GDS3030_2" }, { "dataset_id": "GDS3030", "description": "10 min", "sample_id": [ "GSM172055" ], "type": "time", "id": "GDS3030_3" }, { "dataset_id": "GDS3030", "description": "20 min", "sample_id": [ "GSM172057" ], "type": "time", "id": "GDS3030_4" }, { "dataset_id": "GDS3030", "description": "60 min", "sample_id": [ "GSM172058" ], "type": "time", "id": "GDS3030_5" }, { "dataset_id": "GDS3030", "description": "120 min", "sample_id": [ "GSM172059" ], "type": "time", "id": "GDS3030_6" } ], "taxid": "4932", "genes": 6470, "aggregation_function": "mean", "name": "GDS3030", "version": 1.0, "instances": "6", "variables": 6472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3030.tab", "compression": "gz" } ], [ [ "GDS3031.tab" ], { "title": "Myc deficiency effect on the embryonic heart", "description": "Analysis of Myc-deficient hearts from embryonic day 13.5 transgenics. The E13.5 Myc-null embryos show normal ventricular size and structure, but decreased cardiac myocyte proliferation. Results provide insight into the molecular mechanisms underlying Myc-induced cellular proliferation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL4865", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24048", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE7162", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3031", "description": "control", "sample_id": [ "GSM172475", "GSM172476", "GSM172477" ], "type": "genotype/variation", "id": "GDS3031_1" }, { "dataset_id": "GDS3031", "description": "Myc null", "sample_id": [ "GSM172478", "GSM172479", "GSM172480", "GSM172481" ], "type": "genotype/variation", "id": "GDS3031_2" } ], "taxid": "10090", "genes": 18829, "aggregation_function": "mean", "name": "GDS3031", "version": 1.0, "instances": "7", "variables": 18831, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3031.tab", "compression": "gz" } ], [ [ "GDS3032.tab" ], { "title": "Quercetin effect on intestinal cell differentiation in vitro: time course", "description": "Analysis of post-confluent Caco-2 colon cancer cells up to 10 days after treatment with ascorbate-stabilized quercetin, a polyphenol antioxidant compound. Caco-2 cells differentiate after reaching confluency. Results provide insight into quercetin's role in cell-proliferation and -differentiation.", "type": "Expression profiling by array", "pubmed_id": "17639512", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7259", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3032", "description": "control", "sample_id": [ "GSM174945", "GSM174946", "GSM174949", "GSM174950" ], "type": "agent", "id": "GDS3032_1" }, { "dataset_id": "GDS3032", "description": "quercetin", "sample_id": [ "GSM174819", "GSM174944", "GSM174947", "GSM174948" ], "type": "agent", "id": "GDS3032_2" }, { "dataset_id": "GDS3032", "description": "5 d", "sample_id": [ "GSM174819", "GSM174944", "GSM174945", "GSM174946" ], "type": "time", "id": "GDS3032_3" }, { "dataset_id": "GDS3032", "description": "10 d", "sample_id": [ "GSM174947", "GSM174948", "GSM174949", "GSM174950" ], "type": "time", "id": "GDS3032_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3032", "version": 1.0, "instances": "8", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3032.tab", "compression": "gz" } ], [ [ "GDS3033.tab" ], { "title": "Dicer inactivation effect on the embryonic heart", "description": "Analysis of embryonic day 11.5 hearts inactivated for Dicer, an RNase III endonuclease essential for processing of pre-microRNAs (miRNAs) into the mature form. The mutants died from cardiac failure by E12.5. Results provide insight into the role of miRNA function during cardiac development.", "type": "Expression profiling by array", "pubmed_id": "17397913", "platform": "GPL5025", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "36227", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7343", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3033", "description": "control", "sample_id": [ "GSM177005", "GSM177007", "GSM177009" ], "type": "protocol", "id": "GDS3033_1" }, { "dataset_id": "GDS3033", "description": "dicer inactivation", "sample_id": [ "GSM176904", "GSM177006", "GSM177008" ], "type": "protocol", "id": "GDS3033_2" } ], "taxid": "10090", "genes": 32453, "aggregation_function": "mean", "name": "GDS3033", "version": 1.0, "instances": "6", "variables": 32455, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3033.tab", "compression": "gz" } ], [ [ "GDS3034.tab" ], { "title": "Candida albicans effect on endothelial cell line", "description": "Analysis of HUVEC umbilical vein endothelial cells (EC) exposed to Candida albicans blastopsores. ECs actively participate in the innate defense against microbial pathogens. Results provide insight into molecular mechanisms underlying the endothelial stress response to Candida infection.", "type": "Expression profiling by array", "pubmed_id": "18056390", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7355", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3034", "description": "control", "sample_id": [ "GSM177134", "GSM177140", "GSM177141", "GSM177142" ], "type": "protocol", "id": "GDS3034_1" }, { "dataset_id": "GDS3034", "description": "Candida infection", "sample_id": [ "GSM177136", "GSM177137", "GSM177138", "GSM177139" ], "type": "protocol", "id": "GDS3034_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3034", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3034.tab", "compression": "gz" } ], [ [ "GDS3035.tab" ], { "title": "Saccharomyces cerevisiae response to oxidative stress: time course", "description": "Analysis of Saccharomyces cerevisiae cultures at various time points up to 120 minutes following treatment with the oxidant cumene hydroperoxide (CHP). Results provide insight into molecular mechanisms underlying the response of the yeast S. cerevisiae to oxidative stress.", "type": "Expression profiling by array", "pubmed_id": "24073228", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE7645", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3035", "description": "control", "sample_id": [ "GSM184944", "GSM184945", "GSM184946", "GSM184947", "GSM184948", "GSM184949", "GSM184950", "GSM184951", "GSM184952", "GSM184953", "GSM184954", "GSM184955", "GSM184956", "GSM184957", "GSM184958", "GSM184959", "GSM184960", "GSM184961", "GSM184962", "GSM184963", "GSM184964", "GSM184965", "GSM184966", "GSM184967" ], "type": "agent", "id": "GDS3035_1" }, { "dataset_id": "GDS3035", "description": "cumene hydroperoxide", "sample_id": [ "GSM184968", "GSM184969", "GSM184970", "GSM184971", "GSM184972", "GSM184973", "GSM184974", "GSM184975", "GSM184976", "GSM184977", "GSM184978", "GSM184979", "GSM184980", "GSM184981", "GSM184982", "GSM184983", "GSM184984", "GSM184985", "GSM184986", "GSM184987", "GSM184988", "GSM184989", "GSM184990", "GSM184991" ], "type": "agent", "id": "GDS3035_2" }, { "dataset_id": "GDS3035", "description": "0 min", "sample_id": [ "GSM184944", "GSM184952", "GSM184960", "GSM184968", "GSM184976", "GSM184984" ], "type": "time", "id": "GDS3035_3" }, { "dataset_id": "GDS3035", "description": "3 min", "sample_id": [ "GSM184945", "GSM184953", "GSM184961", "GSM184969", "GSM184977", "GSM184985" ], "type": "time", "id": "GDS3035_4" }, { "dataset_id": "GDS3035", "description": "6 min", "sample_id": [ "GSM184946", "GSM184954", "GSM184962", "GSM184970", "GSM184978", "GSM184986" ], "type": "time", "id": "GDS3035_5" }, { "dataset_id": "GDS3035", "description": "12 min", "sample_id": [ "GSM184947", "GSM184955", "GSM184963", "GSM184971", "GSM184979", "GSM184987" ], "type": "time", "id": "GDS3035_6" }, { "dataset_id": "GDS3035", "description": "20 min", "sample_id": [ "GSM184948", "GSM184956", "GSM184964", "GSM184972", "GSM184980", "GSM184988" ], "type": "time", "id": "GDS3035_7" }, { "dataset_id": "GDS3035", "description": "40 min", "sample_id": [ "GSM184949", "GSM184957", "GSM184965", "GSM184973", "GSM184981", "GSM184989" ], "type": "time", "id": "GDS3035_8" }, { "dataset_id": "GDS3035", "description": "70 min", "sample_id": [ "GSM184950", "GSM184958", "GSM184966", "GSM184974", "GSM184982", "GSM184990" ], "type": "time", "id": "GDS3035_9" }, { "dataset_id": "GDS3035", "description": "120 min", "sample_id": [ "GSM184951", "GSM184959", "GSM184967", "GSM184975", "GSM184983", "GSM184991" ], "type": "time", "id": "GDS3035_10" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3035", "version": 1.0, "instances": "48", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3035.tab", "compression": "gz" } ], [ [ "GDS3036.tab" ], { "title": "HOXB4 induction effect on embryoid bodies", "description": "Analysis of ES cell-derived embryoid bodies (EBs) following transcriptional induction of homeobox transcription factor HOXB4. HOXB4 induction increases production of hematopoietic progenitors within EBs. Results provide insight into molecular mechanisms underlying HOXB4-induced stem cell expansion.", "type": "Expression profiling by array", "pubmed_id": "17940039", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9044", "order": "none", "update_date": "Oct 30 2008", "subsets": [ { "dataset_id": "GDS3036", "description": "control", "sample_id": [ "GSM229799", "GSM229801", "GSM229803" ], "type": "protocol", "id": "GDS3036_1" }, { "dataset_id": "GDS3036", "description": "HOXB4 induction", "sample_id": [ "GSM229800", "GSM229802", "GSM229804" ], "type": "protocol", "id": "GDS3036_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3036", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3036.tab", "compression": "gz" } ], [ [ "GDS3037.tab" ], { "title": "Histone H3 lysine 9 demethylase depletion effect on embryonic stem cells", "description": "Analysis of embryonic stem (ES) cells following depletion of the histone H3 Lys 9 demethylase genes, Jmjd1a and Jmjd2c. Pluripotent ES cells possess the ability to self-renew indefinitely. Results provide insight into the role of Jmjd1a and Jmjd2c in the maintenance of self-renewal in ES cells.", "type": "Expression profiling by array", "pubmed_id": "17938240", "platform": "GPL4234", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46133", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE8937", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3037", "description": "control", "sample_id": [ "GSM226595", "GSM226597", "GSM226599", "GSM226601", "GSM226603", "GSM226605" ], "type": "protocol", "id": "GDS3037_1" }, { "dataset_id": "GDS3037", "description": "Jmjd1a depletion", "sample_id": [ "GSM226596", "GSM226598", "GSM226600" ], "type": "protocol", "id": "GDS3037_2" }, { "dataset_id": "GDS3037", "description": "Jmjd2c depletion", "sample_id": [ "GSM226602", "GSM226604", "GSM226606" ], "type": "protocol", "id": "GDS3037_3" } ], "taxid": "10090", "genes": 33750, "aggregation_function": "mean", "name": "GDS3037", "version": 1.0, "instances": "12", "variables": 33752, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3037.tab", "compression": "gz" } ], [ [ "GDS3038.tab" ], { "title": "rrf-3 and eri-1 mutants: larvae", "description": "Analysis of L4 larvae mutant for RRF-3 or ERI-1. RRF-3 and ERI-1 encode proteins required for the accumulation of endogenous secondary siRNAs. Results provide insight into the transcriptional effects caused by the loss of the RRF-3 and ERI-1 proteins and provide further insight into their functions.", "type": "Expression profiling by array", "pubmed_id": "17919598", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8659", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3038", "description": "wild type", "sample_id": [ "GSM214716", "GSM214725", "GSM214727" ], "type": "genotype/variation", "id": "GDS3038_1" }, { "dataset_id": "GDS3038", "description": "eri-1 mutant", "sample_id": [ "GSM214731", "GSM214732", "GSM214733" ], "type": "genotype/variation", "id": "GDS3038_2" }, { "dataset_id": "GDS3038", "description": "rrf-3 mutant", "sample_id": [ "GSM214728", "GSM214729", "GSM214730" ], "type": "genotype/variation", "id": "GDS3038_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3038", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3038.tab", "compression": "gz" } ], [ [ "GDS304.tab" ], { "title": "Ligand screen in B cells: interferon beta", "description": "Temporal analysis of effects induced by 1.2 nM interferon beta in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE383", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS304", "description": "30 minute", "sample_id": [ "GSM5590", "GSM5591", "GSM5592" ], "type": "time", "id": "GDS304_1" }, { "dataset_id": "GDS304", "description": "60 minute", "sample_id": [ "GSM5593", "GSM5594", "GSM5595" ], "type": "time", "id": "GDS304_2" }, { "dataset_id": "GDS304", "description": "120 minute", "sample_id": [ "GSM5596", "GSM5597", "GSM5598" ], "type": "time", "id": "GDS304_3" }, { "dataset_id": "GDS304", "description": "240 minute", "sample_id": [ "GSM5599", "GSM5600", "GSM5601" ], "type": "time", "id": "GDS304_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS304", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS304.tab", "compression": "gz" } ], [ [ "GDS3040.tab" ], { "title": "Matrix metalloproteinase mutant airway epithelial cells response to Pseudomonas aeruginosa infection: time course", "description": "Analysis of cultured airway epithelial cells (AEC) from matrix metalloproteinase (MMP) -7 or -10 mutants after P. aeruginosa infection. MMP-7 and MMP-10 are induced by acute P. aeruginosa pulmonary infection. Results provide insight into the roles of the MMPs in the host response to Pseudomonas.", "type": "Expression profiling by array", "pubmed_id": "17923522", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE7957", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3040", "description": "wild type", "sample_id": [ "GSM196062", "GSM196063", "GSM196064", "GSM196065", "GSM196066", "GSM196067", "GSM196068", "GSM196069" ], "type": "genotype/variation", "id": "GDS3040_1" }, { "dataset_id": "GDS3040", "description": "Mmp-7 mutant", "sample_id": [ "GSM196070", "GSM196071", "GSM196072", "GSM196073", "GSM196074", "GSM196075", "GSM196076", "GSM196077", "GSM196078" ], "type": "genotype/variation", "id": "GDS3040_2" }, { "dataset_id": "GDS3040", "description": "Mmp-10 mutant", "sample_id": [ "GSM196079", "GSM196080", "GSM196081", "GSM196082", "GSM196083", "GSM196084", "GSM196085", "GSM196086" ], "type": "genotype/variation", "id": "GDS3040_3" }, { "dataset_id": "GDS3040", "description": "uninfected", "sample_id": [ "GSM196062", "GSM196063", "GSM196064", "GSM196070", "GSM196071", "GSM196072", "GSM196079", "GSM196080", "GSM196081" ], "type": "infection", "id": "GDS3040_4" }, { "dataset_id": "GDS3040", "description": "P. aeruginosa", "sample_id": [ "GSM196065", "GSM196066", "GSM196067", "GSM196068", "GSM196069", "GSM196073", "GSM196074", "GSM196075", "GSM196076", "GSM196077", "GSM196078", "GSM196082", "GSM196083", "GSM196084", "GSM196085", "GSM196086" ], "type": "infection", "id": "GDS3040_5" }, { "dataset_id": "GDS3040", "description": "0 h", "sample_id": [ "GSM196062", "GSM196063", "GSM196064", "GSM196070", "GSM196071", "GSM196072", "GSM196079", "GSM196080", "GSM196081" ], "type": "time", "id": "GDS3040_6" }, { "dataset_id": "GDS3040", "description": "1 h", "sample_id": [ "GSM196065", "GSM196066", "GSM196067", "GSM196073", "GSM196074", "GSM196075", "GSM196082", "GSM196083", "GSM196084" ], "type": "time", "id": "GDS3040_7" }, { "dataset_id": "GDS3040", "description": "24 h", "sample_id": [ "GSM196068", "GSM196069", "GSM196076", "GSM196077", "GSM196078", "GSM196085", "GSM196086" ], "type": "time", "id": "GDS3040_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3040", "version": 1.0, "instances": "25", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3040.tab", "compression": "gz" } ], [ [ "GDS3041.tab" ], { "title": "Encapsulated Streptococcus pneumoniae strains effect on pharyngeal epithelial cell line", "description": "Analysis of pharyngeal epithelial cells exposed to various encapsulated strains of Streptococcus pneumoniae. Nasopharynx colonization by S. pneumoniae is mediated by adherence to the respiratory epithelium. Results provide insight into the capsule-dependent host response to pneumococcal adherence.", "type": "Expression profiling by array", "pubmed_id": "17709418", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE8527", "order": "none", "update_date": "May 14 2015", "subsets": [ { "dataset_id": "GDS3041", "description": "uninfected", "sample_id": [ "GSM211676", "GSM211677", "GSM211678", "GSM211682", "GSM211683", "GSM211696", "GSM211697", "GSM211698" ], "type": "infection", "id": "GDS3041_1" }, { "dataset_id": "GDS3041", "description": "infected", "sample_id": [ "GSM211667", "GSM211668", "GSM211669", "GSM211670", "GSM211671", "GSM211672", "GSM211673", "GSM211674", "GSM211675", "GSM211679", "GSM211680", "GSM211681", "GSM211684", "GSM211685", "GSM211686", "GSM211687", "GSM211688", "GSM211689", "GSM211690", "GSM211691", "GSM211692", "GSM211693", "GSM211694", "GSM211695" ], "type": "infection", "id": "GDS3041_2" }, { "dataset_id": "GDS3041", "description": "uncapsulated", "sample_id": [ "GSM211670", "GSM211671", "GSM211672", "GSM211673", "GSM211674", "GSM211675", "GSM211687", "GSM211688", "GSM211689", "GSM211690", "GSM211691", "GSM211692" ], "type": "cell type", "id": "GDS3041_3" }, { "dataset_id": "GDS3041", "description": "encapsulated", "sample_id": [ "GSM211667", "GSM211668", "GSM211669", "GSM211679", "GSM211680", "GSM211681", "GSM211684", "GSM211685", "GSM211686" ], "type": "cell type", "id": "GDS3041_4" }, { "dataset_id": "GDS3041", "description": "not applicable", "sample_id": [ "GSM211676", "GSM211677", "GSM211678", "GSM211682", "GSM211683", "GSM211693", "GSM211694", "GSM211695", "GSM211696", "GSM211697", "GSM211698" ], "type": "cell type", "id": "GDS3041_5" }, { "dataset_id": "GDS3041", "description": "D39 strain", "sample_id": [ "GSM211667", "GSM211668", "GSM211669", "GSM211670", "GSM211671", "GSM211672", "GSM211690", "GSM211691", "GSM211692" ], "type": "agent", "id": "GDS3041_6" }, { "dataset_id": "GDS3041", "description": "G54 strain", "sample_id": [ "GSM211673", "GSM211674", "GSM211675", "GSM211679", "GSM211680", "GSM211681" ], "type": "agent", "id": "GDS3041_7" }, { "dataset_id": "GDS3041", "description": "TIGR4 strain", "sample_id": [ "GSM211684", "GSM211685", "GSM211686", "GSM211687", "GSM211688", "GSM211689" ], "type": "agent", "id": "GDS3041_8" }, { "dataset_id": "GDS3041", "description": "not applicable", "sample_id": [ "GSM211676", "GSM211677", "GSM211678", "GSM211682", "GSM211683", "GSM211696", "GSM211697", "GSM211698" ], "type": "agent", "id": "GDS3041_9" }, { "dataset_id": "GDS3041", "description": "type 2 capsular polysaccharide", "sample_id": [ "GSM211693", "GSM211694", "GSM211695" ], "type": "agent", "id": "GDS3041_10" }, { "dataset_id": "GDS3041", "description": "not applicable", "sample_id": [ "GSM211676", "GSM211677", "GSM211678", "GSM211682", "GSM211683", "GSM211693", "GSM211694", "GSM211695", "GSM211696", "GSM211697", "GSM211698" ], "type": "dose", "id": "GDS3041_11" }, { "dataset_id": "GDS3041", "description": "less than MOI 20 to 1", "sample_id": [ "GSM211690", "GSM211691", "GSM211692" ], "type": "dose", "id": "GDS3041_12" }, { "dataset_id": "GDS3041", "description": "MOI 20 to 1", "sample_id": [ "GSM211667", "GSM211668", "GSM211669", "GSM211670", "GSM211671", "GSM211672", "GSM211673", "GSM211674", "GSM211675", "GSM211679", "GSM211680", "GSM211681", "GSM211684", "GSM211685", "GSM211686", "GSM211687", "GSM211688", "GSM211689" ], "type": "dose", "id": "GDS3041_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3041", "version": 1.0, "instances": "32", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3041.tab", "compression": "gz" } ], [ [ "GDS3042.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (I)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3042", "description": "control", "sample_id": [ "GSM34039", "GSM34040", "GSM34041" ], "type": "agent", "id": "GDS3042_1" }, { "dataset_id": "GDS3042", "description": "imatinib", "sample_id": [ "GSM34042", "GSM34043", "GSM34044" ], "type": "agent", "id": "GDS3042_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3042", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3042.tab", "compression": "gz" } ], [ [ "GDS3043.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (II)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3043", "description": "control", "sample_id": [ "GSM34134", "GSM34140", "GSM34146" ], "type": "agent", "id": "GDS3043_1" }, { "dataset_id": "GDS3043", "description": "imatinib", "sample_id": [ "GSM34162", "GSM34163", "GSM34164" ], "type": "agent", "id": "GDS3043_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3043", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3043.tab", "compression": "gz" } ], [ [ "GDS3044.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (III)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3044", "description": "control", "sample_id": [ "GSM34909", "GSM34910", "GSM34911" ], "type": "agent", "id": "GDS3044_1" }, { "dataset_id": "GDS3044", "description": "imatinib", "sample_id": [ "GSM34912", "GSM34913", "GSM34914" ], "type": "agent", "id": "GDS3044_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3044", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3044.tab", "compression": "gz" } ], [ [ "GDS3045.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (IV)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3045", "description": "control", "sample_id": [ "GSM34915", "GSM34916", "GSM34917" ], "type": "agent", "id": "GDS3045_1" }, { "dataset_id": "GDS3045", "description": "imatinib", "sample_id": [ "GSM34918", "GSM34919", "GSM34920" ], "type": "agent", "id": "GDS3045_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3045", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3045.tab", "compression": "gz" } ], [ [ "GDS3046.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (V)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3046", "description": "control", "sample_id": [ "GSM34921", "GSM34922", "GSM34923" ], "type": "agent", "id": "GDS3046_1" }, { "dataset_id": "GDS3046", "description": "imatinib", "sample_id": [ "GSM34924", "GSM34925", "GSM34926" ], "type": "agent", "id": "GDS3046_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3046", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3046.tab", "compression": "gz" } ], [ [ "GDS3047.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (VI)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3047", "description": "control", "sample_id": [ "GSM34927", "GSM34928", "GSM34929" ], "type": "agent", "id": "GDS3047_1" }, { "dataset_id": "GDS3047", "description": "imatinib", "sample_id": [ "GSM34930", "GSM34931", "GSM34932" ], "type": "agent", "id": "GDS3047_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3047", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3047.tab", "compression": "gz" } ], [ [ "GDS3048.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (VII)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3048", "description": "control", "sample_id": [ "GSM34933", "GSM34934", "GSM34935" ], "type": "agent", "id": "GDS3048_1" }, { "dataset_id": "GDS3048", "description": "imatinib", "sample_id": [ "GSM34936", "GSM34937", "GSM34938" ], "type": "agent", "id": "GDS3048_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3048", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3048.tab", "compression": "gz" } ], [ [ "GDS3049.tab" ], { "title": "Imatinib effect on K562 leukemia cell line (VIII)", "description": "Analysis of K562 leukemia cells treated with 1 uM imatinib for 24 hours. Imatinib is a highly selective and potent growth-inhibitor of BCR/ABL1 expressing cells such as K562. Results provide insight into molecular mechanisms underlying BCR/ABL1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1922", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3049", "description": "control", "sample_id": [ "GSM34939", "GSM34940", "GSM34941" ], "type": "agent", "id": "GDS3049_1" }, { "dataset_id": "GDS3049", "description": "imatinib", "sample_id": [ "GSM34942", "GSM34943", "GSM34944" ], "type": "agent", "id": "GDS3049_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3049", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3049.tab", "compression": "gz" } ], [ [ "GDS305.tab" ], { "title": "Ligand screen in B cells: interferon gamma", "description": "Temporal analysis of effects induced by 0.25 nM interferon gamma in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE384", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS305", "description": "30 minute", "sample_id": [ "GSM5602", "GSM5603", "GSM5604" ], "type": "time", "id": "GDS305_1" }, { "dataset_id": "GDS305", "description": "60 minute", "sample_id": [ "GSM5605", "GSM5606", "GSM5607" ], "type": "time", "id": "GDS305_2" }, { "dataset_id": "GDS305", "description": "120 minute", "sample_id": [ "GSM5608", "GSM5609", "GSM5610" ], "type": "time", "id": "GDS305_3" }, { "dataset_id": "GDS305", "description": "240 minute", "sample_id": [ "GSM5611", "GSM5612", "GSM5613" ], "type": "time", "id": "GDS305_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS305", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS305.tab", "compression": "gz" } ], [ [ "GDS3050.tab" ], { "title": "Male and female lungs response to hantavirus infection: time course", "description": "Analysis of male and female lungs at various time points up to 40 days post-infection with Seoul hantavirus. Males and females differ in their susceptibility to several RNA and DNA viruses. Results provide insight into the influence of gender in the response to Seoul hantavirus infections.", "type": "Expression profiling by array", "pubmed_id": "18053684", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE7271", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3050", "description": "male", "sample_id": [ "GSM175452", "GSM175453", "GSM175454", "GSM175455", "GSM175456", "GSM175457", "GSM175458", "GSM175459", "GSM175460", "GSM175461", "GSM175462", "GSM175463" ], "type": "gender", "id": "GDS3050_1" }, { "dataset_id": "GDS3050", "description": "female", "sample_id": [ "GSM175440", "GSM175441", "GSM175442", "GSM175443", "GSM175444", "GSM175445", "GSM175446", "GSM175447", "GSM175448", "GSM175449", "GSM175450", "GSM175451" ], "type": "gender", "id": "GDS3050_2" }, { "dataset_id": "GDS3050", "description": "uninfected", "sample_id": [ "GSM175440", "GSM175441", "GSM175442", "GSM175452", "GSM175453", "GSM175454" ], "type": "infection", "id": "GDS3050_3" }, { "dataset_id": "GDS3050", "description": "hantavirus", "sample_id": [ "GSM175443", "GSM175444", "GSM175445", "GSM175446", "GSM175447", "GSM175448", "GSM175449", "GSM175450", "GSM175451", "GSM175455", "GSM175456", "GSM175457", "GSM175458", "GSM175459", "GSM175460", "GSM175461", "GSM175462", "GSM175463" ], "type": "infection", "id": "GDS3050_4" }, { "dataset_id": "GDS3050", "description": "0 days p.i.", "sample_id": [ "GSM175440", "GSM175441", "GSM175442", "GSM175452", "GSM175453", "GSM175454" ], "type": "time", "id": "GDS3050_5" }, { "dataset_id": "GDS3050", "description": "3 days p.i.", "sample_id": [ "GSM175443", "GSM175444", "GSM175445", "GSM175455", "GSM175456", "GSM175457" ], "type": "time", "id": "GDS3050_6" }, { "dataset_id": "GDS3050", "description": "15 days p.i.", "sample_id": [ "GSM175446", "GSM175447", "GSM175448", "GSM175458", "GSM175459", "GSM175460" ], "type": "time", "id": "GDS3050_7" }, { "dataset_id": "GDS3050", "description": "40 days p.i", "sample_id": [ "GSM175449", "GSM175450", "GSM175451", "GSM175461", "GSM175462", "GSM175463" ], "type": "time", "id": "GDS3050_8" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3050", "version": 1.0, "instances": "24", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3050.tab", "compression": "gz" } ], [ [ "GDS3051.tab" ], { "title": "Fibroblast cell line response to two and three dimensional collagen-glycosaminoglycan culture environments", "description": "Analysis of IMR-90 fibroblasts cultured in a two- or a three-dimensional collagen-glycosaminoglycan (GAG) environment. The 3-D presentation of collagen-GAG stimulates increased fibroblast remodeling activity. Results provide insight into molecular changes elicited by the 3-D collagen-GAG interface.", "type": "Expression profiling by array", "pubmed_id": "16620959", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE1937", "order": "none", "update_date": "Aug 25 2008", "subsets": [ { "dataset_id": "GDS3051", "description": "control", "sample_id": [ "GSM34736", "GSM34737", "GSM34738", "GSM34739" ], "type": "growth protocol", "id": "GDS3051_1" }, { "dataset_id": "GDS3051", "description": "2-dimensional", "sample_id": [ "GSM34740", "GSM34741", "GSM34742", "GSM34743" ], "type": "growth protocol", "id": "GDS3051_2" }, { "dataset_id": "GDS3051", "description": "3-dimensional", "sample_id": [ "GSM34744", "GSM34745", "GSM34746", "GSM34747" ], "type": "growth protocol", "id": "GDS3051_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3051", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3051.tab", "compression": "gz" } ], [ [ "GDS3052.tab" ], { "title": "Various normal tissues", "description": "Analysis of a range of various normal tissues in mouse, a model organism for the study of development, genetics, behavior, and disease.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE1986", "order": "none", "update_date": "Aug 26 2008", "subsets": [ { "dataset_id": "GDS3052", "description": "brain", "sample_id": [ "GSM35544" ], "type": "tissue", "id": "GDS3052_1" }, { "dataset_id": "GDS3052", "description": "naive CD4 cell", "sample_id": [ "GSM35545" ], "type": "tissue", "id": "GDS3052_2" }, { "dataset_id": "GDS3052", "description": "day 7 embryo", "sample_id": [ "GSM35546" ], "type": "tissue", "id": "GDS3052_3" }, { "dataset_id": "GDS3052", "description": "eye", "sample_id": [ "GSM35547" ], "type": "tissue", "id": "GDS3052_4" }, { "dataset_id": "GDS3052", "description": "heart", "sample_id": [ "GSM35548" ], "type": "tissue", "id": "GDS3052_5" }, { "dataset_id": "GDS3052", "description": "kidney", "sample_id": [ "GSM35549" ], "type": "tissue", "id": "GDS3052_6" }, { "dataset_id": "GDS3052", "description": "liver", "sample_id": [ "GSM35550" ], "type": "tissue", "id": "GDS3052_7" }, { "dataset_id": "GDS3052", "description": "lung", "sample_id": [ "GSM35551" ], "type": "tissue", "id": "GDS3052_8" }, { "dataset_id": "GDS3052", "description": "lymph node", "sample_id": [ "GSM35552" ], "type": "tissue", "id": "GDS3052_9" }, { "dataset_id": "GDS3052", "description": "ovary", "sample_id": [ "GSM35553" ], "type": "tissue", "id": "GDS3052_10" }, { "dataset_id": "GDS3052", "description": "placenta", "sample_id": [ "GSM35554" ], "type": "tissue", "id": "GDS3052_11" }, { "dataset_id": "GDS3052", "description": "skeletal muscle", "sample_id": [ "GSM35555" ], "type": "tissue", "id": "GDS3052_12" }, { "dataset_id": "GDS3052", "description": "spleen", "sample_id": [ "GSM35556" ], "type": "tissue", "id": "GDS3052_13" }, { "dataset_id": "GDS3052", "description": "stomach", "sample_id": [ "GSM35557" ], "type": "tissue", "id": "GDS3052_14" }, { "dataset_id": "GDS3052", "description": "submaxillary gland", "sample_id": [ "GSM35558" ], "type": "tissue", "id": "GDS3052_15" }, { "dataset_id": "GDS3052", "description": "testis", "sample_id": [ "GSM35559" ], "type": "tissue", "id": "GDS3052_16" }, { "dataset_id": "GDS3052", "description": "thymus", "sample_id": [ "GSM35560" ], "type": "tissue", "id": "GDS3052_17" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3052", "version": 1.0, "instances": "17", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3052.tab", "compression": "gz" } ], [ [ "GDS3054.tab" ], { "title": "Cigarette smoking effect on the buccal epithelium", "description": "Analysis of buccal epithelia from cigarette smokers. Cigarette smoke creates a field of injury in epithelial cells lining the respiratory tract. Results extend the concept of a smoking-induced field of injury beyond intrathoracic (bronchial) epithelia to extrathoracic epithelia that line the mouth.", "type": "Expression profiling by array", "pubmed_id": "18513428", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE8987", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3054", "description": "control", "sample_id": [ "GSM227858", "GSM227859", "GSM227860", "GSM227866", "GSM227867" ], "type": "agent", "id": "GDS3054_1" }, { "dataset_id": "GDS3054", "description": "cigarette smoke", "sample_id": [ "GSM227861", "GSM227862", "GSM227863", "GSM227864", "GSM227865" ], "type": "agent", "id": "GDS3054_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3054", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3054.tab", "compression": "gz" } ], [ [ "GDS3056.tab" ], { "title": "LIGHT overexpressing T cells and a high fat diet effect on the liver", "description": "Analysis of livers of Lck-LIGHT transgenics fed a high fat diet. Lck-LIGHT animals overexpress LIGHT, a tumor necrosis factor cytokine family member, in T cells and develop hyperlipidemia. Results provide insight into the role of T cells and liver in regulating lipid homeostasis mediated by LIGHT.", "type": "Expression profiling by array", "pubmed_id": "17431181", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6903", "order": "none", "update_date": "Aug 26 2008", "subsets": [ { "dataset_id": "GDS3056", "description": "control", "sample_id": [ "GSM159279", "GSM159280", "GSM159281" ], "type": "protocol", "id": "GDS3056_1" }, { "dataset_id": "GDS3056", "description": "LIGHT overexpression", "sample_id": [ "GSM159282", "GSM159283", "GSM159284" ], "type": "protocol", "id": "GDS3056_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3056", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3056.tab", "compression": "gz" } ], [ [ "GDS3057.tab" ], { "title": "Acute myeloid leukemia", "description": "Comparison of leukemic blasts from 26 acute myeloid leukemia (AML) patients with normal hematopoietic cells at a variety of different stages of maturation from 38 healthy donors. Results provide insight into the possible clinical significance of those genes with AML-specific expression changes.", "type": "Expression profiling by array", "pubmed_id": "17910043", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "transformed count", "reference_series": "GSE9476", "order": "none", "update_date": "Nov 01 2007", "subsets": [ { "dataset_id": "GDS3057", "description": "leukemia", "sample_id": [ "GSM239516", "GSM239371", "GSM239487", "GSM239489", "GSM239492", "GSM239497", "GSM239520", "GSM240427", "GSM239345", "GSM239346", "GSM239348", "GSM239363", "GSM239460", "GSM239485", "GSM239488", "GSM239490", "GSM239491", "GSM239493", "GSM239494", "GSM239495", "GSM239496", "GSM239498", "GSM239580", "GSM240405", "GSM240406", "GSM240429" ], "type": "disease state", "id": "GDS3057_1" }, { "dataset_id": "GDS3057", "description": "bone marrow", "sample_id": [ "GSM239323", "GSM239324", "GSM239326", "GSM239328", "GSM239329", "GSM239331", "GSM239332", "GSM239333", "GSM239334", "GSM239335", "GSM239371", "GSM239487", "GSM239489", "GSM239492", "GSM239497", "GSM239520", "GSM240427" ], "type": "cell type", "id": "GDS3057_2" }, { "dataset_id": "GDS3057", "description": "peripheral blood", "sample_id": [ "GSM240430", "GSM240431", "GSM240432", "GSM240433", "GSM240494", "GSM240495", "GSM240496", "GSM240497", "GSM240498", "GSM240499", "GSM239516", "GSM239345", "GSM239346", "GSM239348", "GSM239363", "GSM239460", "GSM239485", "GSM239488", "GSM239490", "GSM239491", "GSM239493", "GSM239494", "GSM239495", "GSM239496", "GSM239498", "GSM239580", "GSM240405", "GSM240406", "GSM240429" ], "type": "cell type", "id": "GDS3057_3" }, { "dataset_id": "GDS3057", "description": "bone marrow CD34plus", "sample_id": [ "GSM239170", "GSM239338", "GSM239339", "GSM239340", "GSM239341", "GSM239342", "GSM239343", "GSM239344" ], "type": "cell type", "id": "GDS3057_4" }, { "dataset_id": "GDS3057", "description": "PBSC CD34plus", "sample_id": [ "GSM240500", "GSM240501", "GSM240502", "GSM240503", "GSM240504", "GSM240505", "GSM240506", "GSM240507", "GSM240508", "GSM240509" ], "type": "cell type", "id": "GDS3057_5" }, { "dataset_id": "GDS3057", "description": "normal", "sample_id": [ "GSM239323", "GSM239324", "GSM239326", "GSM239328", "GSM239329", "GSM239331", "GSM239332", "GSM239333", "GSM239334", "GSM239335", "GSM239170", "GSM239338", "GSM239339", "GSM239340", "GSM239341", "GSM239342", "GSM239343", "GSM239344", "GSM240500", "GSM240501", "GSM240502", "GSM240503", "GSM240504", "GSM240505", "GSM240506", "GSM240507", "GSM240508", "GSM240509", "GSM240430", "GSM240431", "GSM240432", "GSM240433", "GSM240494", "GSM240495", "GSM240496", "GSM240497", "GSM240498", "GSM240499" ], "type": "disease state", "id": "GDS3057_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3057", "version": 1.0, "instances": "64", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3057.tab", "compression": "gz" } ], [ [ "GDS3058.tab" ], { "title": "Transcription factor Sp3 deficiency effect on the embryonic heart", "description": "Analysis of hearts from embryonic day 12.5 C57Bl/6 mutants deficient for the zinc finger transcription factor Sp3. C57Bl/6 animals lacking Sp3 die before birth. Results provide insight into the role of Sp3 in the development of the embryonic heart.", "type": "Expression profiling by array", "pubmed_id": "17923686", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9124", "order": "none", "update_date": "Nov 06 2007", "subsets": [ { "dataset_id": "GDS3058", "description": "wild type", "sample_id": [ "GSM230957", "GSM230959", "GSM230960" ], "type": "genotype/variation", "id": "GDS3058_1" }, { "dataset_id": "GDS3058", "description": "Sp3 null", "sample_id": [ "GSM230954", "GSM230955", "GSM230956" ], "type": "genotype/variation", "id": "GDS3058_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3058", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3058.tab", "compression": "gz" } ], [ [ "GDS306.tab" ], { "title": "Ligand screen in B cells: insulin-like growth factor 1", "description": "Temporal analysis of effects induced by 4 nM insulin-like growth factor 1 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE385", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS306", "description": "30 minute", "sample_id": [ "GSM5614", "GSM5615", "GSM5616" ], "type": "time", "id": "GDS306_1" }, { "dataset_id": "GDS306", "description": "60 minute", "sample_id": [ "GSM5617", "GSM5618", "GSM5619" ], "type": "time", "id": "GDS306_2" }, { "dataset_id": "GDS306", "description": "120 minute", "sample_id": [ "GSM5620", "GSM5621", "GSM5622" ], "type": "time", "id": "GDS306_3" }, { "dataset_id": "GDS306", "description": "240 minute", "sample_id": [ "GSM5623", "GSM5624", "GSM5625" ], "type": "time", "id": "GDS306_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS306", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS306.tab", "compression": "gz" } ], [ [ "GDS3060.tab" ], { "title": "Endometriosis: endometrial endothelial cells", "description": "Analysis of cultured endometrial endothelial cells derived from the eutopic endometria of patients with endometriosis. Results provide insight into the role of aberrant angiogenesis in the pathogenesis of endometriosis.", "type": "Expression profiling by array", "pubmed_id": "17956924", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7846", "order": "none", "update_date": "Nov 06 2007", "subsets": [ { "dataset_id": "GDS3060", "description": "control", "sample_id": [ "GSM190400", "GSM190401", "GSM190402", "GSM190403", "GSM190404" ], "type": "disease state", "id": "GDS3060_1" }, { "dataset_id": "GDS3060", "description": "endometriosis", "sample_id": [ "GSM190395", "GSM190396", "GSM190397", "GSM190398", "GSM190399" ], "type": "disease state", "id": "GDS3060_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3060", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3060.tab", "compression": "gz" } ], [ [ "GDS3061.tab" ], { "title": "Ribosomal protein null mutants", "description": "Analysis of several Saccharomyces cerevisiae mutants each deficient in one of various ribosomal proteins. S. cerevisiae contains many duplicated genes encoding ribosomal proteins. Results provide insight into the unique role of each member of a pair of ribosomal protein paralogs.", "type": "Expression profiling by array", "pubmed_id": "17981122", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8761", "order": "none", "update_date": "Nov 07 2007", "subsets": [ { "dataset_id": "GDS3061", "description": "wild type", "sample_id": [ "GSM217395", "GSM217616" ], "type": "genotype/variation", "id": "GDS3061_1" }, { "dataset_id": "GDS3061", "description": "rpl7a null", "sample_id": [ "GSM217617", "GSM217618" ], "type": "genotype/variation", "id": "GDS3061_2" }, { "dataset_id": "GDS3061", "description": "rpl7b null", "sample_id": [ "GSM217621", "GSM217633" ], "type": "genotype/variation", "id": "GDS3061_3" }, { "dataset_id": "GDS3061", "description": "rpl12a null", "sample_id": [ "GSM217634", "GSM217635" ], "type": "genotype/variation", "id": "GDS3061_4" }, { "dataset_id": "GDS3061", "description": "rpl12b null", "sample_id": [ "GSM217636", "GSM217637" ], "type": "genotype/variation", "id": "GDS3061_5" }, { "dataset_id": "GDS3061", "description": "rpl14a null", "sample_id": [ "GSM217638", "GSM217639" ], "type": "genotype/variation", "id": "GDS3061_6" }, { "dataset_id": "GDS3061", "description": "rpl22a null", "sample_id": [ "GSM217640", "GSM217641" ], "type": "genotype/variation", "id": "GDS3061_7" }, { "dataset_id": "GDS3061", "description": "rpl22b null", "sample_id": [ "GSM217642", "GSM217643" ], "type": "genotype/variation", "id": "GDS3061_8" }, { "dataset_id": "GDS3061", "description": "rps0a null", "sample_id": [ "GSM217745", "GSM217746" ], "type": "genotype/variation", "id": "GDS3061_9" }, { "dataset_id": "GDS3061", "description": "rps0b null", "sample_id": [ "GSM217747", "GSM217748" ], "type": "genotype/variation", "id": "GDS3061_10" }, { "dataset_id": "GDS3061", "description": "rps18a null", "sample_id": [ "GSM217749", "GSM217750" ], "type": "genotype/variation", "id": "GDS3061_11" }, { "dataset_id": "GDS3061", "description": "rps18b null", "sample_id": [ "GSM217751", "GSM217752" ], "type": "genotype/variation", "id": "GDS3061_12" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3061", "version": 1.0, "instances": "24", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3061.tab", "compression": "gz" } ], [ [ "GDS3062.tab" ], { "title": "Multipotent stromal cell expansion in vitro", "description": "Temporal analysis of cultures of multipotent stromal cells (MSCs) from bone marrow aspirates from 3 donors. On day 2, the MSCs are in transition from lag phase to log phase; on day 7, they are in stationary phase. Results provide insight into the molecular changes in MSCs during in vitro expansion.", "type": "Expression profiling by array", "pubmed_id": "17916801", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9520", "order": "none", "update_date": "Nov 07 2007", "subsets": [ { "dataset_id": "GDS3062", "description": "Donor220R", "sample_id": [ "GSM241198", "GSM241199" ], "type": "individual", "id": "GDS3062_1" }, { "dataset_id": "GDS3062", "description": "Donor240L", "sample_id": [ "GSM241200", "GSM241201" ], "type": "individual", "id": "GDS3062_2" }, { "dataset_id": "GDS3062", "description": "Donor5064L", "sample_id": [ "GSM241202", "GSM241203" ], "type": "individual", "id": "GDS3062_3" }, { "dataset_id": "GDS3062", "description": "day 2", "sample_id": [ "GSM241198", "GSM241200", "GSM241202" ], "type": "time", "id": "GDS3062_4" }, { "dataset_id": "GDS3062", "description": "day 7", "sample_id": [ "GSM241199", "GSM241201", "GSM241203" ], "type": "time", "id": "GDS3062_5" }, { "dataset_id": "GDS3062", "description": "lag to log phase transition", "sample_id": [ "GSM241198", "GSM241200", "GSM241202" ], "type": "other", "id": "GDS3062_6" }, { "dataset_id": "GDS3062", "description": "stationary phase", "sample_id": [ "GSM241199", "GSM241201", "GSM241203" ], "type": "other", "id": "GDS3062_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3062", "version": 1.0, "instances": "6", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3062.tab", "compression": "gz" } ], [ [ "GDS3064.tab" ], { "title": "Estrogen effect on estrogen receptors alpha and beta single knockouts: aorta", "description": "Analysis of estrogen receptor alpha or beta null aortas of ovariectomized animals treated with estrogen. Estrogen is important in vascular tone regulation and in cardiovascular disease pathophysiology. Results provide insight into the mechanisms mediating the effects of estrogen in blood vessels.", "type": "Expression profiling by array", "pubmed_id": "17374850", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE9371", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3064", "description": "wild type", "sample_id": [ "GSM238478", "GSM238479", "GSM238480", "GSM238481", "GSM238482", "GSM238483", "GSM238484", "GSM238485", "GSM238486", "GSM238487" ], "type": "genotype/variation", "id": "GDS3064_1" }, { "dataset_id": "GDS3064", "description": "estrogen receptor alpha null", "sample_id": [ "GSM238488", "GSM238489", "GSM238490", "GSM238491", "GSM238492", "GSM238493" ], "type": "genotype/variation", "id": "GDS3064_2" }, { "dataset_id": "GDS3064", "description": "estrogen receptor beta null", "sample_id": [ "GSM238494", "GSM238495", "GSM238496", "GSM238497", "GSM238498", "GSM238499" ], "type": "genotype/variation", "id": "GDS3064_3" }, { "dataset_id": "GDS3064", "description": "control", "sample_id": [ "GSM238478", "GSM238479", "GSM238480", "GSM238481", "GSM238482", "GSM238488", "GSM238489", "GSM238490", "GSM238494", "GSM238495", "GSM238496" ], "type": "agent", "id": "GDS3064_4" }, { "dataset_id": "GDS3064", "description": "estrogen", "sample_id": [ "GSM238483", "GSM238484", "GSM238485", "GSM238486", "GSM238487", "GSM238491", "GSM238492", "GSM238493", "GSM238497", "GSM238498", "GSM238499" ], "type": "agent", "id": "GDS3064_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3064", "version": 1.0, "instances": "22", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3064.tab", "compression": "gz" } ], [ [ "GDS3068.tab" ], { "title": "Primary hepatocytes and HepG2 liver cells response to various fluoroquinolones", "description": "Analysis of primary hepatocytes (PHs) and HepG2 liver cells treated with various fluoroquinolones. PHs are used in drug metabolism research, and HepG2 cells are surrogates for PHs. Results provide insight into the differences in the response of PHs and HepG2 cells to xenobiotics.", "type": "Expression profiling by array", "pubmed_id": "17967932", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE9166", "order": "none", "update_date": "Nov 07 2007", "subsets": [ { "dataset_id": "GDS3068", "description": "primary hepatocyte", "sample_id": [ "GSM231324", "GSM231326", "GSM231329", "GSM231331", "GSM231332", "GSM231333", "GSM231482", "GSM231503", "GSM231505", "GSM231507", "GSM231509", "GSM231510", "GSM231511", "GSM231512", "GSM231513", "GSM231514", "GSM231515", "GSM231516" ], "type": "cell type", "id": "GDS3068_1" }, { "dataset_id": "GDS3068", "description": "HepG2", "sample_id": [ "GSM231517", "GSM231518", "GSM231519", "GSM231520", "GSM231521", "GSM231522", "GSM231523", "GSM231524", "GSM231525", "GSM231526", "GSM231527", "GSM231528", "GSM231529", "GSM231530", "GSM231531" ], "type": "cell type", "id": "GDS3068_2" }, { "dataset_id": "GDS3068", "description": "donor A", "sample_id": [ "GSM231324", "GSM231326", "GSM231332", "GSM231333", "GSM231482", "GSM231503", "GSM231505", "GSM231507", "GSM231509", "GSM231510", "GSM231511", "GSM231512", "GSM231513", "GSM231514" ], "type": "other", "id": "GDS3068_3" }, { "dataset_id": "GDS3068", "description": "donor B", "sample_id": [ "GSM231329", "GSM231331", "GSM231515", "GSM231516" ], "type": "other", "id": "GDS3068_4" }, { "dataset_id": "GDS3068", "description": "cell line", "sample_id": [ "GSM231517", "GSM231518", "GSM231519", "GSM231520", "GSM231521", "GSM231522", "GSM231523", "GSM231524", "GSM231525", "GSM231526", "GSM231527", "GSM231528", "GSM231529", "GSM231530", "GSM231531" ], "type": "other", "id": "GDS3068_5" }, { "dataset_id": "GDS3068", "description": "vehicle", "sample_id": [ "GSM231324", "GSM231326", "GSM231329", "GSM231331", "GSM231526", "GSM231527", "GSM231530", "GSM231531" ], "type": "agent", "id": "GDS3068_6" }, { "dataset_id": "GDS3068", "description": "ciproflaxin", "sample_id": [ "GSM231332", "GSM231333", "GSM231517", "GSM231523" ], "type": "agent", "id": "GDS3068_7" }, { "dataset_id": "GDS3068", "description": "clinafloxacin", "sample_id": [ "GSM231482", "GSM231503", "GSM231525" ], "type": "agent", "id": "GDS3068_8" }, { "dataset_id": "GDS3068", "description": "gatifloxacin", "sample_id": [ "GSM231505", "GSM231507", "GSM231518", "GSM231521" ], "type": "agent", "id": "GDS3068_9" }, { "dataset_id": "GDS3068", "description": "grepafloxacin", "sample_id": [ "GSM231509", "GSM231510", "GSM231524" ], "type": "agent", "id": "GDS3068_10" }, { "dataset_id": "GDS3068", "description": "levofloxacin", "sample_id": [ "GSM231511", "GSM231512", "GSM231520", "GSM231528" ], "type": "agent", "id": "GDS3068_11" }, { "dataset_id": "GDS3068", "description": "trovafloxacin", "sample_id": [ "GSM231513", "GSM231514", "GSM231515", "GSM231516", "GSM231519", "GSM231522", "GSM231529" ], "type": "agent", "id": "GDS3068_12" }, { "dataset_id": "GDS3068", "description": "control", "sample_id": [ "GSM231324", "GSM231326", "GSM231329", "GSM231331", "GSM231526", "GSM231527", "GSM231530", "GSM231531" ], "type": "dose", "id": "GDS3068_13" }, { "dataset_id": "GDS3068", "description": "100 uM", "sample_id": [ "GSM231519", "GSM231520", "GSM231521", "GSM231522", "GSM231523", "GSM231524", "GSM231525", "GSM231529" ], "type": "dose", "id": "GDS3068_14" }, { "dataset_id": "GDS3068", "description": "400 uM", "sample_id": [ "GSM231332", "GSM231333", "GSM231482", "GSM231503", "GSM231507", "GSM231509", "GSM231505", "GSM231510", "GSM231511", "GSM231512", "GSM231513", "GSM231514", "GSM231515", "GSM231516" ], "type": "dose", "id": "GDS3068_15" }, { "dataset_id": "GDS3068", "description": "500 uM", "sample_id": [ "GSM231517" ], "type": "dose", "id": "GDS3068_16" }, { "dataset_id": "GDS3068", "description": "800 uM", "sample_id": [ "GSM231518", "GSM231528" ], "type": "dose", "id": "GDS3068_17" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3068", "version": 1.0, "instances": "33", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3068.tab", "compression": "gz" } ], [ [ "GDS3069.tab" ], { "title": "Various brain tumors", "description": "Analysis of 12 primary brain tumor biopsies with some variation in their histological diagnoses. These results, together with those obtained from miRNA profiling by real-time PCR, provide insight into the relationship between endogenous fluctuations in miRNA and mRNA expression levels.", "type": "Expression profiling by array", "pubmed_id": "17726534", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE8692", "order": "none", "update_date": "Mar 10 2008", "subsets": [ { "dataset_id": "GDS3069", "description": "low grade anaplastic mixed glioma", "sample_id": [ "GSM215421", "GSM215424" ], "type": "disease state", "id": "GDS3069_1" }, { "dataset_id": "GDS3069", "description": "high grade glioblastoma", "sample_id": [ "GSM215420", "GSM215422", "GSM215423", "GSM215425", "GSM215426", "GSM215427" ], "type": "disease state", "id": "GDS3069_2" }, { "dataset_id": "GDS3069", "description": "high grade glioblastoma/gliosarcoma", "sample_id": [ "GSM215418" ], "type": "disease state", "id": "GDS3069_3" }, { "dataset_id": "GDS3069", "description": "high grade gliosarcoma", "sample_id": [ "GSM215428", "GSM215429" ], "type": "disease state", "id": "GDS3069_4" }, { "dataset_id": "GDS3069", "description": "low grade oligodendroglioma", "sample_id": [ "GSM215419" ], "type": "disease state", "id": "GDS3069_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3069", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3069.tab", "compression": "gz" } ], [ [ "GDS307.tab" ], { "title": "Ligand screen in B cells: interleukin 4", "description": "Temporal analysis of effects induced by 0.34 nM interleukin 4 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE386", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS307", "description": "30 minute", "sample_id": [ "GSM5626", "GSM5627", "GSM5628" ], "type": "time", "id": "GDS307_1" }, { "dataset_id": "GDS307", "description": "60 minute", "sample_id": [ "GSM5629", "GSM5630", "GSM5631" ], "type": "time", "id": "GDS307_2" }, { "dataset_id": "GDS307", "description": "120 minute", "sample_id": [ "GSM5637", "GSM5638", "GSM5639" ], "type": "time", "id": "GDS307_3" }, { "dataset_id": "GDS307", "description": "240 minute", "sample_id": [ "GSM5640", "GSM5641", "GSM5642" ], "type": "time", "id": "GDS307_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS307", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS307.tab", "compression": "gz" } ], [ [ "GDS3070.tab" ], { "title": "Benzothiadiazole effect on Oryza sativa leaves", "description": "Analysis of leaves of Oryza sativa plants treated with benzothiadiazole (BTH). BTH is a functional analog of salicylic acid and enhances the resistance of rice to the fungal pathogen Rhizoctonia solani. Results provide insight into the molecular mechanisms underlying BTH-induced disease resistance.", "type": "Expression profiling by array", "pubmed_id": "17601827", "platform": "GPL5101", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "40901", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE7567", "order": "none", "update_date": "Nov 13 2007", "subsets": [ { "dataset_id": "GDS3070", "description": "control", "sample_id": [ "GSM183478", "GSM183479", "GSM183480", "GSM183481" ], "type": "agent", "id": "GDS3070_1" }, { "dataset_id": "GDS3070", "description": "benzothiadiazole", "sample_id": [ "GSM183474", "GSM183475", "GSM183476", "GSM183477" ], "type": "agent", "id": "GDS3070_2" } ], "taxid": "4530", "genes": 29502, "aggregation_function": "mean", "name": "GDS3070", "version": 1.0, "instances": "8", "variables": 29504, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3070.tab", "compression": "gz" } ], [ [ "GDS3071.tab" ], { "title": "Keloid fibroblast response to hydrocortisone in vitro", "description": "Analysis of keloid fibroblasts (FBs) treated with 1.5uM hydrocortisone (HC). Keloids are benign dermal tumors that form during protracted wound healing. HC at 1.5uM inhibits collagen and elastin synthesis in normal scar FBs but not in keloid FBs. Results provide insight into keloid pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17989729", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE7890", "order": "none", "update_date": "Nov 20 2008", "subsets": [ { "dataset_id": "GDS3071", "description": "untreated", "sample_id": [ "GSM194109", "GSM194110", "GSM194111", "GSM194112", "GSM194113", "GSM194118", "GSM194119", "GSM194120", "GSM194121", "GSM194122" ], "type": "agent", "id": "GDS3071_1" }, { "dataset_id": "GDS3071", "description": "hydrocortisone", "sample_id": [ "GSM194104", "GSM194105", "GSM194106", "GSM194107", "GSM194108", "GSM194114", "GSM194115", "GSM194116", "GSM194117" ], "type": "agent", "id": "GDS3071_2" }, { "dataset_id": "GDS3071", "description": "normal scar", "sample_id": [ "GSM194114", "GSM194115", "GSM194116", "GSM194117", "GSM194118", "GSM194119", "GSM194120", "GSM194121", "GSM194122" ], "type": "disease state", "id": "GDS3071_3" }, { "dataset_id": "GDS3071", "description": "keloid scar", "sample_id": [ "GSM194104", "GSM194105", "GSM194106", "GSM194107", "GSM194108", "GSM194109", "GSM194110", "GSM194111", "GSM194112", "GSM194113" ], "type": "disease state", "id": "GDS3071_4" }, { "dataset_id": "GDS3071", "description": "21", "sample_id": [ "GSM194117", "GSM194118" ], "type": "strain", "id": "GDS3071_5" }, { "dataset_id": "GDS3071", "description": "58", "sample_id": [ "GSM194120" ], "type": "strain", "id": "GDS3071_6" }, { "dataset_id": "GDS3071", "description": "131", "sample_id": [ "GSM194115", "GSM194122" ], "type": "strain", "id": "GDS3071_7" }, { "dataset_id": "GDS3071", "description": "170", "sample_id": [ "GSM194116", "GSM194119" ], "type": "strain", "id": "GDS3071_8" }, { "dataset_id": "GDS3071", "description": "33", "sample_id": [ "GSM194104", "GSM194112" ], "type": "strain", "id": "GDS3071_9" }, { "dataset_id": "GDS3071", "description": "50", "sample_id": [ "GSM194105", "GSM194113" ], "type": "strain", "id": "GDS3071_10" }, { "dataset_id": "GDS3071", "description": "124", "sample_id": [ "GSM194108", "GSM194111" ], "type": "strain", "id": "GDS3071_11" }, { "dataset_id": "GDS3071", "description": "145", "sample_id": [ "GSM194106", "GSM194109" ], "type": "strain", "id": "GDS3071_12" }, { "dataset_id": "GDS3071", "description": "116", "sample_id": [ "GSM194114", "GSM194121" ], "type": "strain", "id": "GDS3071_13" }, { "dataset_id": "GDS3071", "description": "261", "sample_id": [ "GSM194107", "GSM194110" ], "type": "strain", "id": "GDS3071_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3071", "version": 1.0, "instances": "19", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3071.tab", "compression": "gz" } ], [ [ "GDS3072.tab" ], { "title": "Alcohol sensitivity model", "description": "Analysis of alcohol resistant and sensitive strains. Strains generated by artificial selection for alcohol sensitivity over multiple generations. Results provide insight into the molecular basis of alcohol sensitivity.", "type": "Expression profiling by array", "pubmed_id": "17973985", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE7614", "order": "none", "update_date": "Nov 20 2008", "subsets": [ { "dataset_id": "GDS3072", "description": "control", "sample_id": [ "GSM183815", "GSM183816", "GSM183817", "GSM183856", "GSM183990", "GSM183991", "GSM183992", "GSM183993" ], "type": "strain", "id": "GDS3072_1" }, { "dataset_id": "GDS3072", "description": "alcohol resistant", "sample_id": [ "GSM183887", "GSM183888", "GSM183936", "GSM183989", "GSM184121", "GSM184122", "GSM184123", "GSM184124" ], "type": "strain", "id": "GDS3072_2" }, { "dataset_id": "GDS3072", "description": "alcohol sensitive", "sample_id": [ "GSM183857", "GSM183858", "GSM183875", "GSM183886", "GSM183994", "GSM184118", "GSM184119", "GSM184120" ], "type": "strain", "id": "GDS3072_3" }, { "dataset_id": "GDS3072", "description": "male", "sample_id": [ "GSM183815", "GSM183816", "GSM183857", "GSM183858", "GSM183887", "GSM183888", "GSM183990", "GSM183991", "GSM183994", "GSM184118", "GSM184121", "GSM184122" ], "type": "gender", "id": "GDS3072_4" }, { "dataset_id": "GDS3072", "description": "female", "sample_id": [ "GSM183817", "GSM183856", "GSM183875", "GSM183886", "GSM183936", "GSM183989", "GSM183992", "GSM183993", "GSM184119", "GSM184120", "GSM184123", "GSM184124" ], "type": "gender", "id": "GDS3072_5" }, { "dataset_id": "GDS3072", "description": "selection line 1", "sample_id": [ "GSM183815", "GSM183816", "GSM183817", "GSM183856", "GSM183857", "GSM183858", "GSM183875", "GSM183886", "GSM183887", "GSM183888", "GSM183936", "GSM183989" ], "type": "other", "id": "GDS3072_6" }, { "dataset_id": "GDS3072", "description": "selection line 2", "sample_id": [ "GSM183990", "GSM183991", "GSM183992", "GSM183993", "GSM183994", "GSM184118", "GSM184119", "GSM184120", "GSM184121", "GSM184122", "GSM184123", "GSM184124" ], "type": "other", "id": "GDS3072_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3072", "version": 1.0, "instances": "24", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3072.tab", "compression": "gz" } ], [ [ "GDS3073.tab" ], { "title": "Neutrophil response to aerobic exercise", "description": "Analysis of neutrophils from healthy males before and after 30 minutes of aerobic exercise. The number of circulating neutrophils increases after exercise. Results provide insight into the molecular response of these immune cells to exercise.", "type": "Expression profiling by array", "pubmed_id": "18006867", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8668", "order": "none", "update_date": "Nov 20 2008", "subsets": [ { "dataset_id": "GDS3073", "description": "before exercise", "sample_id": [ "GSM214982", "GSM214984", "GSM214986", "GSM214988", "GSM214990", "GSM214992", "GSM214994", "GSM214996", "GSM214998", "GSM215000", "GSM215002", "GSM215004" ], "type": "protocol", "id": "GDS3073_1" }, { "dataset_id": "GDS3073", "description": "after exercise", "sample_id": [ "GSM214983", "GSM214985", "GSM214987", "GSM214989", "GSM214991", "GSM214993", "GSM214995", "GSM214997", "GSM214999", "GSM215001", "GSM215003", "GSM215005" ], "type": "protocol", "id": "GDS3073_2" }, { "dataset_id": "GDS3073", "description": "subject 1", "sample_id": [ "GSM214982", "GSM214983" ], "type": "individual", "id": "GDS3073_3" }, { "dataset_id": "GDS3073", "description": "subject 2", "sample_id": [ "GSM214984", "GSM214985" ], "type": "individual", "id": "GDS3073_4" }, { "dataset_id": "GDS3073", "description": "subject 3", "sample_id": [ "GSM214986", "GSM214987" ], "type": "individual", "id": "GDS3073_5" }, { "dataset_id": "GDS3073", "description": "subject 4", "sample_id": [ "GSM214988", "GSM214989" ], "type": "individual", "id": "GDS3073_6" }, { "dataset_id": "GDS3073", "description": "subject 5", "sample_id": [ "GSM214990", "GSM214991" ], "type": "individual", "id": "GDS3073_7" }, { "dataset_id": "GDS3073", "description": "subject 6", "sample_id": [ "GSM214992", "GSM214993" ], "type": "individual", "id": "GDS3073_8" }, { "dataset_id": "GDS3073", "description": "subject 7", "sample_id": [ "GSM214994", "GSM214995" ], "type": "individual", "id": "GDS3073_9" }, { "dataset_id": "GDS3073", "description": "subject 8", "sample_id": [ "GSM214996", "GSM214997" ], "type": "individual", "id": "GDS3073_10" }, { "dataset_id": "GDS3073", "description": "subject 9", "sample_id": [ "GSM214998", "GSM214999" ], "type": "individual", "id": "GDS3073_11" }, { "dataset_id": "GDS3073", "description": "subject 10", "sample_id": [ "GSM215000", "GSM215001" ], "type": "individual", "id": "GDS3073_12" }, { "dataset_id": "GDS3073", "description": "subject 11", "sample_id": [ "GSM215002", "GSM215003" ], "type": "individual", "id": "GDS3073_13" }, { "dataset_id": "GDS3073", "description": "subject 12", "sample_id": [ "GSM215004", "GSM215005" ], "type": "individual", "id": "GDS3073_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3073", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3073.tab", "compression": "gz" } ], [ [ "GDS3074.tab" ], { "title": "Hypertension models: resistance arteries", "description": "Analysis of small diameter branches of the saphenous artery from spontaneously hypertensive (SHR) and adrenocorticotropic hormone (ACTH)-induced hypertensive animals. The saphenous artery is a resistance artery. Results provide insight molecular mechanisms contributing to hypertension.", "type": "Expression profiling by array", "pubmed_id": "17986358", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8051", "order": "none", "update_date": "Nov 28 2007", "subsets": [ { "dataset_id": "GDS3074", "description": "normotensive", "sample_id": [ "GSM198857", "GSM198858", "GSM198859" ], "type": "disease state", "id": "GDS3074_1" }, { "dataset_id": "GDS3074", "description": "hypertensive", "sample_id": [ "GSM198860", "GSM198861", "GSM198862", "GSM198863", "GSM198864", "GSM198865" ], "type": "disease state", "id": "GDS3074_2" }, { "dataset_id": "GDS3074", "description": "WKY", "sample_id": [ "GSM198857", "GSM198858", "GSM198859", "GSM198860", "GSM198861", "GSM198862" ], "type": "strain", "id": "GDS3074_3" }, { "dataset_id": "GDS3074", "description": "SHR", "sample_id": [ "GSM198863", "GSM198864", "GSM198865" ], "type": "strain", "id": "GDS3074_4" }, { "dataset_id": "GDS3074", "description": "not applicable", "sample_id": [ "GSM198857", "GSM198858", "GSM198859", "GSM198863", "GSM198864", "GSM198865" ], "type": "agent", "id": "GDS3074_5" }, { "dataset_id": "GDS3074", "description": "ACTH", "sample_id": [ "GSM198860", "GSM198861", "GSM198862" ], "type": "agent", "id": "GDS3074_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3074", "version": 1.0, "instances": "9", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3074.tab", "compression": "gz" } ], [ [ "GDS3077.tab" ], { "title": "Age-related aortic vasculopathy model", "description": "Analysis of thoracic aortas (TAs) of Fischer 344/Brown Norway F1 hybrids (F344xBN) at 3 to 28 months of age. Age is a risk factor for vascular disease. The TAs of F344xBN animals exhibit age-related pathologies. Results provide insight into the mechanisms underlying age-mediated vascular pathology.", "type": "Expression profiling by array", "pubmed_id": "17873024", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE7281", "order": "ordered", "update_date": "Nov 28 2007", "subsets": [ { "dataset_id": "GDS3077", "description": "3 mo", "sample_id": [ "GSM175543", "GSM175544", "GSM175545", "GSM175546" ], "type": "age", "id": "GDS3077_1" }, { "dataset_id": "GDS3077", "description": "6 mo", "sample_id": [ "GSM175547", "GSM175548", "GSM175549", "GSM175550" ], "type": "age", "id": "GDS3077_2" }, { "dataset_id": "GDS3077", "description": "15 mo", "sample_id": [ "GSM175551", "GSM175552", "GSM175553", "GSM175554" ], "type": "age", "id": "GDS3077_3" }, { "dataset_id": "GDS3077", "description": "28 mo", "sample_id": [ "GSM175555", "GSM175556", "GSM175557", "GSM175558" ], "type": "age", "id": "GDS3077_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3077", "version": 1.0, "instances": "16", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3077.tab", "compression": "gz" } ], [ [ "GDS3078.tab" ], { "title": "High fat diet effect on the skeletal muscle: time course", "description": "Analysis of skeletal muscles of C57BL/6J animals fed a low or high fat diet for 3 or 28 days. Oversupply of lipid to skeletal muscle can result in insulin resistance, a characteristic of metabolic syndrome (MS). Results provide insight into the molecular events underlying the early onset of MS.", "type": "Expression profiling by array", "pubmed_id": "18042831", "platform": "GPL5766", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "16361", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8524", "order": "none", "update_date": "Nov 30 2007", "subsets": [ { "dataset_id": "GDS3078", "description": "low fat diet", "sample_id": [ "GSM211635", "GSM211636", "GSM211637", "GSM211638", "GSM211639", "GSM211646", "GSM211647", "GSM211648", "GSM211649", "GSM211650", "GSM211651", "GSM225051" ], "type": "protocol", "id": "GDS3078_1" }, { "dataset_id": "GDS3078", "description": "high fat diet", "sample_id": [ "GSM211640", "GSM211641", "GSM211642", "GSM211643", "GSM211644", "GSM211645", "GSM211652", "GSM211653", "GSM211654", "GSM211655", "GSM211656", "GSM211657" ], "type": "protocol", "id": "GDS3078_2" }, { "dataset_id": "GDS3078", "description": "3 d", "sample_id": [ "GSM211635", "GSM211636", "GSM211637", "GSM211638", "GSM211639", "GSM211640", "GSM211641", "GSM211642", "GSM211643", "GSM211644", "GSM211645", "GSM225051" ], "type": "time", "id": "GDS3078_3" }, { "dataset_id": "GDS3078", "description": "28 d", "sample_id": [ "GSM211646", "GSM211647", "GSM211648", "GSM211649", "GSM211650", "GSM211651", "GSM211652", "GSM211653", "GSM211654", "GSM211655", "GSM211656", "GSM211657" ], "type": "time", "id": "GDS3078_4" } ], "taxid": "10090", "genes": 15932, "aggregation_function": "mean", "name": "GDS3078", "version": 1.0, "instances": "24", "variables": 15935, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3078.tab", "compression": "gz" } ], [ [ "GDS3079.tab" ], { "title": "Cadmium effect on the testis: time course", "description": "Analysis of testes of animals treated with cadmium chloride for 8 or 20 hours. Cadmium is an environmental pollutant that adversely affects the male reproductive system. Results provide insight into the molecular basis of the toxic effect of cadmium on the male reproductive system.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE9480", "order": "none", "update_date": "Nov 30 2007", "subsets": [ { "dataset_id": "GDS3079", "description": "control", "sample_id": [ "GSM240630", "GSM240631", "GSM240632" ], "type": "agent", "id": "GDS3079_1" }, { "dataset_id": "GDS3079", "description": "cadmium", "sample_id": [ "GSM240633", "GSM240634", "GSM240635", "GSM240636" ], "type": "agent", "id": "GDS3079_2" }, { "dataset_id": "GDS3079", "description": "0 h", "sample_id": [ "GSM240630", "GSM240631", "GSM240632" ], "type": "time", "id": "GDS3079_3" }, { "dataset_id": "GDS3079", "description": "8 h", "sample_id": [ "GSM240633", "GSM240634" ], "type": "time", "id": "GDS3079_4" }, { "dataset_id": "GDS3079", "description": "20 h", "sample_id": [ "GSM240635", "GSM240636" ], "type": "time", "id": "GDS3079_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3079", "version": 1.0, "instances": "7", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3079.tab", "compression": "gz" } ], [ [ "GDS308.tab" ], { "title": "Ligand screen in B cells: interleukin 10", "description": "Temporal analysis of effects induced by 0.35 nM interleukin 10 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE387", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS308", "description": "30 minute", "sample_id": [ "GSM5632", "GSM5633" ], "type": "time", "id": "GDS308_1" }, { "dataset_id": "GDS308", "description": "60 minute", "sample_id": [ "GSM5634", "GSM5635", "GSM5636" ], "type": "time", "id": "GDS308_2" }, { "dataset_id": "GDS308", "description": "120 minute", "sample_id": [ "GSM5643", "GSM5644", "GSM5645" ], "type": "time", "id": "GDS308_3" }, { "dataset_id": "GDS308", "description": "240 minute", "sample_id": [ "GSM5646", "GSM5647", "GSM5648" ], "type": "time", "id": "GDS308_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS308", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS308.tab", "compression": "gz" } ], [ [ "GDS3080.tab" ], { "title": "Prefrontal cortex during a 24 hour (12 hour light:12 hour dark) cycle", "description": "Analysis of prefrontal cortices from C57BL/6J animals at 4 Zeitgeber time (ZT) points, 3 and 9 hrs after lights on (ZT3 and ZT9) and 3 and 9 hs after lights off (ZT15 and ZT21). The prefrontal cortex is important in regulating sleep and mood. Results provide insight into genes with diurnal rhythms.", "type": "Expression profiling by array", "pubmed_id": "18028544", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9471", "order": "ordered", "update_date": "Nov 21 2008", "subsets": [ { "dataset_id": "GDS3080", "description": "ZT 3", "sample_id": [ "GSM240415", "GSM240416", "GSM240417" ], "type": "time", "id": "GDS3080_1" }, { "dataset_id": "GDS3080", "description": "ZT 9", "sample_id": [ "GSM240418", "GSM240419", "GSM240420" ], "type": "time", "id": "GDS3080_2" }, { "dataset_id": "GDS3080", "description": "ZT 15", "sample_id": [ "GSM240421", "GSM240422", "GSM240423" ], "type": "time", "id": "GDS3080_3" }, { "dataset_id": "GDS3080", "description": "ZT 21", "sample_id": [ "GSM240424", "GSM240425", "GSM240426" ], "type": "time", "id": "GDS3080_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3080", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3080.tab", "compression": "gz" } ], [ [ "GDS3081.tab" ], { "title": "not1-2 spt3 double mutant", "description": "Analysis of not1-2 spt3 double mutant cells. NOT1 encodes the scaffold subunit of the Ccr4-Not transcription factor complex. SPT3 encodes a transcription factor. The temperature sensitive not1-2 mutant exhibits transcriptional defects that are suppressed by the deletion of SPT3.", "type": "Expression profiling by array", "pubmed_id": "17660549", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE9432", "order": "none", "update_date": "Nov 30 2007", "subsets": [ { "dataset_id": "GDS3081", "description": "wild type", "sample_id": [ "GSM239654", "GSM239655" ], "type": "genotype/variation", "id": "GDS3081_1" }, { "dataset_id": "GDS3081", "description": "not1-2", "sample_id": [ "GSM239656", "GSM239657" ], "type": "genotype/variation", "id": "GDS3081_2" }, { "dataset_id": "GDS3081", "description": "spt3", "sample_id": [ "GSM239658", "GSM239659" ], "type": "genotype/variation", "id": "GDS3081_3" }, { "dataset_id": "GDS3081", "description": "not1-2 spt3", "sample_id": [ "GSM239660", "GSM239661" ], "type": "genotype/variation", "id": "GDS3081_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3081", "version": 1.0, "instances": "8", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3081.tab", "compression": "gz" } ], [ [ "GDS3082.tab" ], { "title": "Allergic nasal epithelium response to house dust mite allergen in vitro", "description": "Analysis of cultured nasal epithelia prepared from healthy and allergic individuals following exposure to house dust mite (HDM) extract in vitro. Results provide insight into the molecular mechanisms underlying the allergic response of the nasal epithelia to allergens.", "type": "Expression profiling by array", "pubmed_id": "17901406", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE9150", "order": "none", "update_date": "Nov 21 2008", "subsets": [ { "dataset_id": "GDS3082", "description": "healthy", "sample_id": [ "GSM231244", "GSM231245", "GSM231246", "GSM231247", "GSM231248", "GSM231249", "GSM231250", "GSM231251", "GSM231252", "GSM231253" ], "type": "disease state", "id": "GDS3082_1" }, { "dataset_id": "GDS3082", "description": "allergic", "sample_id": [ "GSM231234", "GSM231235", "GSM231236", "GSM231237", "GSM231238", "GSM231239", "GSM231240", "GSM231241", "GSM231242", "GSM231243" ], "type": "disease state", "id": "GDS3082_2" }, { "dataset_id": "GDS3082", "description": "saline", "sample_id": [ "GSM231234", "GSM231236", "GSM231238", "GSM231240", "GSM231242", "GSM231244", "GSM231246", "GSM231248", "GSM231250", "GSM231252" ], "type": "agent", "id": "GDS3082_3" }, { "dataset_id": "GDS3082", "description": "allergen", "sample_id": [ "GSM231235", "GSM231237", "GSM231239", "GSM231241", "GSM231243", "GSM231245", "GSM231247", "GSM231249", "GSM231251", "GSM231253" ], "type": "agent", "id": "GDS3082_4" }, { "dataset_id": "GDS3082", "description": "patient A-01", "sample_id": [ "GSM231234", "GSM231235" ], "type": "individual", "id": "GDS3082_5" }, { "dataset_id": "GDS3082", "description": "patient A-02", "sample_id": [ "GSM231236", "GSM231237" ], "type": "individual", "id": "GDS3082_6" }, { "dataset_id": "GDS3082", "description": "patient A-03", "sample_id": [ "GSM231238", "GSM231239" ], "type": "individual", "id": "GDS3082_7" }, { "dataset_id": "GDS3082", "description": "patient A-04", "sample_id": [ "GSM231240", "GSM231241" ], "type": "individual", "id": "GDS3082_8" }, { "dataset_id": "GDS3082", "description": "patient A-05", "sample_id": [ "GSM231242", "GSM231243" ], "type": "individual", "id": "GDS3082_9" }, { "dataset_id": "GDS3082", "description": "patient C-02", "sample_id": [ "GSM231244", "GSM231245" ], "type": "individual", "id": "GDS3082_10" }, { "dataset_id": "GDS3082", "description": "patient C-03", "sample_id": [ "GSM231246", "GSM231247" ], "type": "individual", "id": "GDS3082_11" }, { "dataset_id": "GDS3082", "description": "patient C-07", "sample_id": [ "GSM231248", "GSM231249" ], "type": "individual", "id": "GDS3082_12" }, { "dataset_id": "GDS3082", "description": "patient C-08", "sample_id": [ "GSM231250", "GSM231251" ], "type": "individual", "id": "GDS3082_13" }, { "dataset_id": "GDS3082", "description": "patient C-09", "sample_id": [ "GSM231252", "GSM231253" ], "type": "individual", "id": "GDS3082_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3082", "version": 1.0, "instances": "20", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3082.tab", "compression": "gz" } ], [ [ "GDS3083.tab" ], { "title": "Skeletal muscle during a 24-hour (12 hour light:12 hour dark) cycle", "description": "Analysis of gastrocnemius muscles of Wistar animals during a 24-hour period, from zeitgeber time (ZT) 0.25 to ZT 23.75. Results provide insight into baseline patterns of gene expression in normal skeletal muscle within the 24 hour circadian cycle.", "type": "Expression profiling by array", "pubmed_id": "18667713", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE8989", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3083", "description": "ZT 0.25", "sample_id": [ "GSM227289", "GSM227290", "GSM227309" ], "type": "time", "id": "GDS3083_1" }, { "dataset_id": "GDS3083", "description": "ZT 1", "sample_id": [ "GSM227330", "GSM227331", "GSM227338" ], "type": "time", "id": "GDS3083_2" }, { "dataset_id": "GDS3083", "description": "ZT 2", "sample_id": [ "GSM227320", "GSM227325", "GSM227334" ], "type": "time", "id": "GDS3083_3" }, { "dataset_id": "GDS3083", "description": "ZT 4", "sample_id": [ "GSM227316", "GSM227326", "GSM227335" ], "type": "time", "id": "GDS3083_4" }, { "dataset_id": "GDS3083", "description": "ZT 6", "sample_id": [ "GSM227294", "GSM227295", "GSM227341" ], "type": "time", "id": "GDS3083_5" }, { "dataset_id": "GDS3083", "description": "ZT 8", "sample_id": [ "GSM227317", "GSM227342", "GSM227345" ], "type": "time", "id": "GDS3083_6" }, { "dataset_id": "GDS3083", "description": "ZT 10", "sample_id": [ "GSM227332", "GSM227346", "GSM227347" ], "type": "time", "id": "GDS3083_7" }, { "dataset_id": "GDS3083", "description": "ZT 11", "sample_id": [ "GSM227296", "GSM227328", "GSM227336" ], "type": "time", "id": "GDS3083_8" }, { "dataset_id": "GDS3083", "description": "ZT 11.75", "sample_id": [ "GSM227291", "GSM227327", "GSM227348" ], "type": "time", "id": "GDS3083_9" }, { "dataset_id": "GDS3083", "description": "ZT 12.25", "sample_id": [ "GSM227307", "GSM227310", "GSM227333" ], "type": "time", "id": "GDS3083_10" }, { "dataset_id": "GDS3083", "description": "ZT 13", "sample_id": [ "GSM227318", "GSM227321", "GSM227329" ], "type": "time", "id": "GDS3083_11" }, { "dataset_id": "GDS3083", "description": "ZT 14", "sample_id": [ "GSM227292", "GSM227311", "GSM227349" ], "type": "time", "id": "GDS3083_12" }, { "dataset_id": "GDS3083", "description": "ZT 16", "sample_id": [ "GSM227293", "GSM227308", "GSM227350" ], "type": "time", "id": "GDS3083_13" }, { "dataset_id": "GDS3083", "description": "ZT 18", "sample_id": [ "GSM227319", "GSM227322", "GSM227337" ], "type": "time", "id": "GDS3083_14" }, { "dataset_id": "GDS3083", "description": "ZT 20", "sample_id": [ "GSM227312", "GSM227339", "GSM227343" ], "type": "time", "id": "GDS3083_15" }, { "dataset_id": "GDS3083", "description": "ZT 22", "sample_id": [ "GSM227313", "GSM227323", "GSM227351" ], "type": "time", "id": "GDS3083_16" }, { "dataset_id": "GDS3083", "description": "ZT 23", "sample_id": [ "GSM227315", "GSM227324", "GSM227344" ], "type": "time", "id": "GDS3083_17" }, { "dataset_id": "GDS3083", "description": "ZT 23.75", "sample_id": [ "GSM227314", "GSM227340", "GSM227352" ], "type": "time", "id": "GDS3083_18" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3083", "version": 1.0, "instances": "54", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3083.tab", "compression": "gz" } ], [ [ "GDS3084.tab" ], { "title": "Liver during a 24-hour (12 hour light:12 hour dark) cycle", "description": "Analysis of livers of Wistar animals during a 24-hour period, from zeitgeber time (ZT) 0.25 to ZT 23.75. Results provide insight into baseline patterns of gene expression in normal liver within the 24 hour circadian cycle.", "type": "Expression profiling by array", "pubmed_id": [ "18562560", "20500897" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE8988", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3084", "description": "ZT 0.25", "sample_id": [ "GSM227353", "GSM227359", "GSM227395" ], "type": "time", "id": "GDS3084_1" }, { "dataset_id": "GDS3084", "description": "ZT 1", "sample_id": [ "GSM227366", "GSM227404", "GSM227405" ], "type": "time", "id": "GDS3084_2" }, { "dataset_id": "GDS3084", "description": "ZT 2", "sample_id": [ "GSM227390", "GSM227398", "GSM227399" ], "type": "time", "id": "GDS3084_3" }, { "dataset_id": "GDS3084", "description": "ZT 4", "sample_id": [ "GSM227368", "GSM227371", "GSM227393" ], "type": "time", "id": "GDS3084_4" }, { "dataset_id": "GDS3084", "description": "ZT 6", "sample_id": [ "GSM227383", "GSM227384", "GSM227394" ], "type": "time", "id": "GDS3084_5" }, { "dataset_id": "GDS3084", "description": "ZT 8", "sample_id": [ "GSM227372", "GSM227385", "GSM227406" ], "type": "time", "id": "GDS3084_6" }, { "dataset_id": "GDS3084", "description": "ZT 10", "sample_id": [ "GSM227360", "GSM227361", "GSM227377" ], "type": "time", "id": "GDS3084_7" }, { "dataset_id": "GDS3084", "description": "ZT 11", "sample_id": [ "GSM227362", "GSM227373", "GSM227402" ], "type": "time", "id": "GDS3084_8" }, { "dataset_id": "GDS3084", "description": "ZT 11.75", "sample_id": [ "GSM227396", "GSM227400", "GSM227401" ], "type": "time", "id": "GDS3084_9" }, { "dataset_id": "GDS3084", "description": "ZT 12.25", "sample_id": [ "GSM227355", "GSM227369", "GSM227403" ], "type": "time", "id": "GDS3084_10" }, { "dataset_id": "GDS3084", "description": "ZT 13", "sample_id": [ "GSM227356", "GSM227357", "GSM227378" ], "type": "time", "id": "GDS3084_11" }, { "dataset_id": "GDS3084", "description": "ZT 14", "sample_id": [ "GSM227363", "GSM227374", "GSM227397" ], "type": "time", "id": "GDS3084_12" }, { "dataset_id": "GDS3084", "description": "ZT 16", "sample_id": [ "GSM227379", "GSM227386", "GSM227387" ], "type": "time", "id": "GDS3084_13" }, { "dataset_id": "GDS3084", "description": "ZT 18", "sample_id": [ "GSM227364", "GSM227365", "GSM227375" ], "type": "time", "id": "GDS3084_14" }, { "dataset_id": "GDS3084", "description": "ZT 20", "sample_id": [ "GSM227376", "GSM227380", "GSM227381" ], "type": "time", "id": "GDS3084_15" }, { "dataset_id": "GDS3084", "description": "ZT 22", "sample_id": [ "GSM227388", "GSM227391", "GSM227392" ], "type": "time", "id": "GDS3084_16" }, { "dataset_id": "GDS3084", "description": "ZT 23", "sample_id": [ "GSM227358", "GSM227367", "GSM227370" ], "type": "time", "id": "GDS3084_17" }, { "dataset_id": "GDS3084", "description": "ZT 23.75", "sample_id": [ "GSM227354", "GSM227382", "GSM227389" ], "type": "time", "id": "GDS3084_18" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3084", "version": 1.0, "instances": "54", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3084.tab", "compression": "gz" } ], [ [ "GDS3085.tab" ], { "title": "Gram-positive and gram-negative sepsis: leukocytes", "description": "Analysis of leukocytes from patients with gram-positive or gram negative sepsis. Results provide insight into the specificity of the host response to gram-positive and gram negative sepsis.", "type": "Expression profiling by array", "pubmed_id": "18379237", "platform": "GPL4274", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "18664", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "72", "value_type": "log ratio", "reference_series": "GSE6535", "order": "none", "update_date": "Dec 03 2007", "subsets": [ { "dataset_id": "GDS3085", "description": "control", "sample_id": [ "GSM151369", "GSM151370", "GSM151371", "GSM151372", "GSM151373", "GSM151374", "GSM151375", "GSM151376", "GSM151377", "GSM151378", "GSM151379", "GSM151380", "GSM151381", "GSM151382", "GSM151383", "GSM151384", "GSM151385" ], "type": "disease state", "id": "GDS3085_1" }, { "dataset_id": "GDS3085", "description": "mixed sepsis", "sample_id": [ "GSM151386", "GSM151387", "GSM151388", "GSM151389", "GSM151390", "GSM151391", "GSM151392", "GSM151393", "GSM151394", "GSM151395", "GSM151396", "GSM151397" ], "type": "disease state", "id": "GDS3085_2" }, { "dataset_id": "GDS3085", "description": "gram-negative sepsis", "sample_id": [ "GSM151398", "GSM151399", "GSM151400", "GSM151401", "GSM151402", "GSM151403", "GSM151404", "GSM151405", "GSM151406", "GSM151407", "GSM151408", "GSM151409", "GSM151410", "GSM151411", "GSM151412", "GSM151413", "GSM151414", "GSM151415", "GSM151416", "GSM151417", "GSM151418", "GSM151419", "GSM151420", "GSM151421", "GSM151422" ], "type": "disease state", "id": "GDS3085_3" }, { "dataset_id": "GDS3085", "description": "gram-positive sepsis", "sample_id": [ "GSM151423", "GSM151424", "GSM151425", "GSM151426", "GSM151427", "GSM151428", "GSM151429", "GSM151430", "GSM151431", "GSM151432", "GSM151433", "GSM151434", "GSM151435", "GSM151436", "GSM151437", "GSM151438", "GSM151439", "GSM151440" ], "type": "disease state", "id": "GDS3085_4" } ], "taxid": "9606", "genes": 17118, "aggregation_function": "mean", "name": "GDS3085", "version": 1.0, "instances": "72", "variables": 17120, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3085.tab", "compression": "gz" } ], [ [ "GDS3086.tab" ], { "title": "Iron overload effect on cardiac and skeletal muscles", "description": "Analysis of cardiac and skeletal muscles of animals fed a high-iron diet to induce iron overload. The cardiac muscle is a tissue affected by iron overload. Result provides insight into the molecular mechanisms underlying the pathological effect of iron overload on muscle cells.", "type": "Expression profiling by array", "pubmed_id": "17949489", "platform": "GPL4234", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46133", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9726", "order": "none", "update_date": "Dec 03 2007", "subsets": [ { "dataset_id": "GDS3086", "description": "skeletal muscle", "sample_id": [ "GSM245354", "GSM245355", "GSM245356", "GSM245357", "GSM245358", "GSM245359" ], "type": "tissue", "id": "GDS3086_1" }, { "dataset_id": "GDS3086", "description": "cardiac muscle", "sample_id": [ "GSM245348", "GSM245349", "GSM245350", "GSM245351", "GSM245352", "GSM245353" ], "type": "tissue", "id": "GDS3086_2" }, { "dataset_id": "GDS3086", "description": "control", "sample_id": [ "GSM245348", "GSM245349", "GSM245350", "GSM245354", "GSM245355", "GSM245356" ], "type": "protocol", "id": "GDS3086_3" }, { "dataset_id": "GDS3086", "description": "iron overload", "sample_id": [ "GSM245351", "GSM245352", "GSM245353", "GSM245357", "GSM245358", "GSM245359" ], "type": "protocol", "id": "GDS3086_4" } ], "taxid": "10090", "genes": 33750, "aggregation_function": "mean", "name": "GDS3086", "version": 1.0, "instances": "12", "variables": 33753, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3086.tab", "compression": "gz" } ], [ [ "GDS3087.tab" ], { "title": "Trim24 deficient hepatocellular carcinoma tumors", "description": "Analysis of hepatocellular carcinoma (HCC) tumors from animals lacking Trim24 (Tif1alpha). Trim24 is a ligand-dependent nuclear receptor transcriptional co-regulator. Animals lacking Trim24 develop HCC. Results provide insight into the potential role of Trim24 as a liver-specific tumor suppressor.", "type": "Expression profiling by array", "pubmed_id": "18026104", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE9012", "order": "none", "update_date": "Nov 24 2008", "subsets": [ { "dataset_id": "GDS3087", "description": "control", "sample_id": [ "GSM228786", "GSM228787", "GSM228788", "GSM228789", "GSM228790" ], "type": "disease state", "id": "GDS3087_1" }, { "dataset_id": "GDS3087", "description": "hepatocellular carcinoma", "sample_id": [ "GSM228781", "GSM228782", "GSM228783", "GSM228784", "GSM228785" ], "type": "disease state", "id": "GDS3087_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3087", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3087.tab", "compression": "gz" } ], [ [ "GDS3088.tab" ], { "title": "Leukotriene B4 effect on monocytes: time course", "description": "Analysis of primary monocytes treated for up 16 hours with leukotriene B4 (LTB4) in vitro. LTB4 is a mediator of inflammation. Monocytes express the cell surface receptors BLT1 and BLT2 that mediate the action of LTB4. Results provide insight into the transcriptional response of monocytes to LTB4.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE9332", "order": "none", "update_date": "Nov 24 2008", "subsets": [ { "dataset_id": "GDS3088", "description": "control", "sample_id": [ "GSM237625", "GSM237627", "GSM237629", "GSM237669", "GSM237671" ], "type": "agent", "id": "GDS3088_1" }, { "dataset_id": "GDS3088", "description": "leukotriene B4", "sample_id": [ "GSM237626", "GSM237628", "GSM237630", "GSM237670" ], "type": "agent", "id": "GDS3088_2" }, { "dataset_id": "GDS3088", "description": "0 h", "sample_id": [ "GSM237625" ], "type": "time", "id": "GDS3088_3" }, { "dataset_id": "GDS3088", "description": "1 h", "sample_id": [ "GSM237626", "GSM237627" ], "type": "time", "id": "GDS3088_4" }, { "dataset_id": "GDS3088", "description": "3 h", "sample_id": [ "GSM237628", "GSM237629" ], "type": "time", "id": "GDS3088_5" }, { "dataset_id": "GDS3088", "description": "6 h", "sample_id": [ "GSM237630", "GSM237669" ], "type": "time", "id": "GDS3088_6" }, { "dataset_id": "GDS3088", "description": "16 h", "sample_id": [ "GSM237670", "GSM237671" ], "type": "time", "id": "GDS3088_7" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS3088", "version": 1.0, "instances": "9", "variables": 45749, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3088.tab", "compression": "gz" } ], [ [ "GDS3089.tab" ], { "title": "Tretinoin effect on promyelocytic leukemia cell line", "description": "Analysis of promyelocytic leukemia HL60 cells treated with tretinoin (all-trans retinoic acid; ATRA) or vehicle. ATRA induces terminal differentiation or growth arrest in HL60 cells. Results suggest a 90-gene expression signature for this cell culture model of hematopoietic differentiation.", "type": "Expression profiling by array", "pubmed_id": "16859521", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5007", "order": "none", "update_date": "Nov 24 2008", "subsets": [ { "dataset_id": "GDS3089", "description": "control", "sample_id": [ "GSM112915", "GSM112916", "GSM112918" ], "type": "agent", "id": "GDS3089_1" }, { "dataset_id": "GDS3089", "description": "tretinoin", "sample_id": [ "GSM112919", "GSM112920", "GSM112921" ], "type": "agent", "id": "GDS3089_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3089", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3089.tab", "compression": "gz" } ], [ [ "GDS309.tab" ], { "title": "Ligand screen in B cells: lysophosphatidic acid", "description": "Temporal analysis of effects induced by 1 uM lysophosphatidic acid in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE388", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS309", "description": "30 minute", "sample_id": [ "GSM5649", "GSM5650", "GSM5651" ], "type": "time", "id": "GDS309_1" }, { "dataset_id": "GDS309", "description": "60 minute", "sample_id": [ "GSM5652", "GSM5653", "GSM5654" ], "type": "time", "id": "GDS309_2" }, { "dataset_id": "GDS309", "description": "120 minute", "sample_id": [ "GSM5655", "GSM5656", "GSM5657" ], "type": "time", "id": "GDS309_3" }, { "dataset_id": "GDS309", "description": "240 minute", "sample_id": [ "GSM5658", "GSM5659", "GSM5660" ], "type": "time", "id": "GDS309_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS309", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS309.tab", "compression": "gz" } ], [ [ "GDS3091.tab" ], { "title": "Noncancerous hepatic tissues from hepatocellular carcinoma patients with and without venous metastasis", "description": "Analysis of noncancerous hepatic tissues surrounding tumors from hepatocellular carcinoma (HCC) patients with and without venous metastasis. Results provide insight into the role of the hepatic microenvironment in HCC metastasis.", "type": "Expression profiling by array", "pubmed_id": "16904609", "platform": "GPL1262", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE5093", "order": "none", "update_date": "Dec 04 2007", "subsets": [ { "dataset_id": "GDS3091", "description": "no metastasis", "sample_id": [ "GSM114910", "GSM114911", "GSM114917", "GSM114918", "GSM114919", "GSM114920", "GSM114921", "GSM114925", "GSM114926", "GSM114927", "GSM114928" ], "type": "disease state", "id": "GDS3091_1" }, { "dataset_id": "GDS3091", "description": "metastasis", "sample_id": [ "GSM114909", "GSM114912", "GSM114913", "GSM114914", "GSM114915", "GSM114916", "GSM114922", "GSM114923", "GSM114924" ], "type": "disease state", "id": "GDS3091_2" } ], "taxid": "9606", "genes": 8612, "aggregation_function": "mean", "name": "GDS3091", "version": 1.0, "instances": "20", "variables": 8614, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3091.tab", "compression": "gz" } ], [ [ "GDS3092.tab" ], { "title": "Endometriosis", "description": "Analysis of ectopic endometrial tissues implanted in the peritoneal cavity of 11 subjects. The growth of endometrial tissue outside of the uterus is called endometriosis. Results provide insight into the molecular pathology of endometriosis.", "type": "Expression profiling by array", "pubmed_id": "17462640", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE5108", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3092", "description": "control", "sample_id": [ "GSM114997", "GSM114999", "GSM115001", "GSM115003", "GSM115005", "GSM115007", "GSM115009", "GSM115011", "GSM115013", "GSM115015", "GSM115018" ], "type": "disease state", "id": "GDS3092_1" }, { "dataset_id": "GDS3092", "description": "endometriosis", "sample_id": [ "GSM114998", "GSM115000", "GSM115002", "GSM115004", "GSM115006", "GSM115008", "GSM115010", "GSM115012", "GSM115014", "GSM115016", "GSM115019" ], "type": "disease state", "id": "GDS3092_2" }, { "dataset_id": "GDS3092", "description": "1", "sample_id": [ "GSM114997", "GSM114998" ], "type": "individual", "id": "GDS3092_3" }, { "dataset_id": "GDS3092", "description": "2", "sample_id": [ "GSM114999", "GSM115000" ], "type": "individual", "id": "GDS3092_4" }, { "dataset_id": "GDS3092", "description": "3", "sample_id": [ "GSM115001", "GSM115002" ], "type": "individual", "id": "GDS3092_5" }, { "dataset_id": "GDS3092", "description": "4", "sample_id": [ "GSM115003", "GSM115004" ], "type": "individual", "id": "GDS3092_6" }, { "dataset_id": "GDS3092", "description": "5", "sample_id": [ "GSM115005", "GSM115006" ], "type": "individual", "id": "GDS3092_7" }, { "dataset_id": "GDS3092", "description": "6", "sample_id": [ "GSM115007", "GSM115008" ], "type": "individual", "id": "GDS3092_8" }, { "dataset_id": "GDS3092", "description": "7", "sample_id": [ "GSM115009", "GSM115010" ], "type": "individual", "id": "GDS3092_9" }, { "dataset_id": "GDS3092", "description": "8", "sample_id": [ "GSM115011", "GSM115012" ], "type": "individual", "id": "GDS3092_10" }, { "dataset_id": "GDS3092", "description": "9", "sample_id": [ "GSM115013", "GSM115014" ], "type": "individual", "id": "GDS3092_11" }, { "dataset_id": "GDS3092", "description": "10", "sample_id": [ "GSM115015", "GSM115016" ], "type": "individual", "id": "GDS3092_12" }, { "dataset_id": "GDS3092", "description": "12", "sample_id": [ "GSM115018", "GSM115019" ], "type": "individual", "id": "GDS3092_13" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS3092", "version": 1.0, "instances": "22", "variables": 45749, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3092.tab", "compression": "gz" } ], [ [ "GDS3095.tab" ], { "title": "Zinc effect on malignant and non-malignant prostate cell lines: time course", "description": "Analysis of malignant PC-3 and non-malignant HPR-1 prostate cells treated for up to 6 hours with zinc. Zinc exposure induces apoptosis in PC-3 cells, but not in HPR-1 cells. Results provide insight into the molecular mechanisms underlying zinc-induced prostatic cell apoptosis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2986", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5590", "order": "none", "update_date": "Nov 24 2008", "subsets": [ { "dataset_id": "GDS3095", "description": "untreated", "sample_id": [ "GSM129421", "GSM129472" ], "type": "agent", "id": "GDS3095_1" }, { "dataset_id": "GDS3095", "description": "zinc", "sample_id": [ "GSM129296", "GSM129470", "GSM129471", "GSM129473", "GSM129474", "GSM129475" ], "type": "agent", "id": "GDS3095_2" }, { "dataset_id": "GDS3095", "description": "HPR-1", "sample_id": [ "GSM129296", "GSM129421", "GSM129470", "GSM129471" ], "type": "cell line", "id": "GDS3095_3" }, { "dataset_id": "GDS3095", "description": "PC-3", "sample_id": [ "GSM129472", "GSM129473", "GSM129474", "GSM129475" ], "type": "cell line", "id": "GDS3095_4" }, { "dataset_id": "GDS3095", "description": "control", "sample_id": [ "GSM129421", "GSM129472" ], "type": "time", "id": "GDS3095_5" }, { "dataset_id": "GDS3095", "description": "1hr", "sample_id": [ "GSM129296", "GSM129473" ], "type": "time", "id": "GDS3095_6" }, { "dataset_id": "GDS3095", "description": "3hr", "sample_id": [ "GSM129470", "GSM129474" ], "type": "time", "id": "GDS3095_7" }, { "dataset_id": "GDS3095", "description": "6hr", "sample_id": [ "GSM129471", "GSM129475" ], "type": "time", "id": "GDS3095_8" } ], "taxid": "9606", "genes": 30389, "aggregation_function": "mean", "name": "GDS3095", "version": 1.0, "instances": "8", "variables": 30393, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3095.tab", "compression": "gz" } ], [ [ "GDS3096.tab" ], { "title": "Inflammatory breast cancer: stroma", "description": "Analysis of stromata surrounding tumors from patients with inflammatory breast cancer (IBC) and invasive non-IBC. This is part of a study that also examines the expression profiles of tumors. Results provide insight into the contribution of the tumor stroma component to the pathogenesis of IBC.", "type": "Expression profiling by array", "pubmed_id": [ "17999412", "19225562" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE5847", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3096", "description": "non-inflammatory breast cancer", "sample_id": [ "GSM136339", "GSM136340", "GSM136341", "GSM136342", "GSM136343", "GSM136344", "GSM136345", "GSM136346", "GSM136347", "GSM136348", "GSM136349", "GSM136350", "GSM136351", "GSM136352", "GSM136353", "GSM136354", "GSM136355", "GSM136356", "GSM136357", "GSM136358", "GSM136359", "GSM136360", "GSM136361", "GSM136362", "GSM136363", "GSM136364", "GSM136365", "GSM136366", "GSM136367", "GSM136368", "GSM136369", "GSM136370", "GSM136371", "GSM136372" ], "type": "disease state", "id": "GDS3096_1" }, { "dataset_id": "GDS3096", "description": "inflammatory breast cancer", "sample_id": [ "GSM136326", "GSM136327", "GSM136328", "GSM136329", "GSM136330", "GSM136331", "GSM136332", "GSM136333", "GSM136334", "GSM136335", "GSM136336", "GSM136337", "GSM136338" ], "type": "disease state", "id": "GDS3096_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3096", "version": 1.0, "instances": "47", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3096.tab", "compression": "gz" } ], [ [ "GDS3097.tab" ], { "title": "Inflammatory breast cancer: tumor", "description": "Analysis of tumor epithelia from patients with inflammatory breast cancer (IBC) and invasive non-IBC. This is part of a study that also examines the expression profiles of stromata surrounding tumors. Results provide insight into the contribution of the tumor component to the pathogenesis of IBC.", "type": "Expression profiling by array", "pubmed_id": [ "17999412", "19225562" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE5847", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3097", "description": "non-inflammatory breast cancer", "sample_id": [ "GSM136386", "GSM136387", "GSM136388", "GSM136389", "GSM136390", "GSM136391", "GSM136392", "GSM136393", "GSM136394", "GSM136395", "GSM136396", "GSM136397", "GSM136398", "GSM136399", "GSM136400", "GSM136401", "GSM136402", "GSM136403", "GSM136404", "GSM136405", "GSM136406", "GSM136407", "GSM136408", "GSM136409", "GSM136410", "GSM136411", "GSM136412", "GSM136413", "GSM136414", "GSM136415", "GSM136416", "GSM136417", "GSM136418", "GSM136419", "GSM136420" ], "type": "disease state", "id": "GDS3097_1" }, { "dataset_id": "GDS3097", "description": "inflammatory breast cancer", "sample_id": [ "GSM136373", "GSM136374", "GSM136375", "GSM136376", "GSM136377", "GSM136378", "GSM136379", "GSM136380", "GSM136381", "GSM136382", "GSM136383", "GSM136384", "GSM136385" ], "type": "disease state", "id": "GDS3097_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3097", "version": 1.0, "instances": "48", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3097.tab", "compression": "gz" } ], [ [ "GDS3099.tab" ], { "title": "Rb null mutant embryonic fibroblast response to cisplatin", "description": "Analysis of retinoblastoma (Rb) deficient embryonic fibroblasts treated with cisplatin. Rb is a tumor suppressor gene. Cisplatin is a genotoxic chemotherapeutic agent. Results provide insight into the role of Rb in the response of embryonic fibroblasts to cisplatin-induced cytotoxicity.", "type": "Expression profiling by array", "pubmed_id": "19584263", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6206", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3099", "description": "wild type", "sample_id": [ "GSM143373", "GSM143374", "GSM143375", "GSM143379", "GSM143380", "GSM143381" ], "type": "genotype/variation", "id": "GDS3099_1" }, { "dataset_id": "GDS3099", "description": "Rb null", "sample_id": [ "GSM143370", "GSM143371", "GSM143372", "GSM143376", "GSM143377", "GSM143378" ], "type": "genotype/variation", "id": "GDS3099_2" }, { "dataset_id": "GDS3099", "description": "untreated", "sample_id": [ "GSM143370", "GSM143371", "GSM143372", "GSM143373", "GSM143374", "GSM143375" ], "type": "agent", "id": "GDS3099_3" }, { "dataset_id": "GDS3099", "description": "cisplatin", "sample_id": [ "GSM143376", "GSM143377", "GSM143378", "GSM143379", "GSM143380", "GSM143381" ], "type": "agent", "id": "GDS3099_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3099", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3099.tab", "compression": "gz" } ], [ [ "GDS31.tab" ], { "title": "Dithiothrietol exposure time course (y13)", "description": "Dithiothrietol (DTT; 2.5 mM) added to culture and samples recovered at several time points up to 180 minutes. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL53", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS31", "description": "5 minute", "sample_id": [ "GSM961" ], "type": "time", "id": "GDS31_1" }, { "dataset_id": "GDS31", "description": "15 minute", "sample_id": [ "GSM962" ], "type": "time", "id": "GDS31_2" }, { "dataset_id": "GDS31", "description": "30 minute", "sample_id": [ "GSM963" ], "type": "time", "id": "GDS31_3" }, { "dataset_id": "GDS31", "description": "45 minute", "sample_id": [ "GSM964" ], "type": "time", "id": "GDS31_4" }, { "dataset_id": "GDS31", "description": "60 minute", "sample_id": [ "GSM965" ], "type": "time", "id": "GDS31_5" }, { "dataset_id": "GDS31", "description": "90 minute", "sample_id": [ "GSM966" ], "type": "time", "id": "GDS31_6" }, { "dataset_id": "GDS31", "description": "120 minute", "sample_id": [ "GSM967" ], "type": "time", "id": "GDS31_7" }, { "dataset_id": "GDS31", "description": "180 minute", "sample_id": [ "GSM968" ], "type": "time", "id": "GDS31_8" } ], "taxid": "4932", "genes": 6360, "aggregation_function": "mean", "name": "GDS31", "version": 1.0, "instances": "8", "variables": 6362, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS31.tab", "compression": "gz" } ], [ [ "GDS310.tab" ], { "title": "Ligand screen in B cells: lipopolysaccharide", "description": "Temporal analysis of effects induced by 40 ug/ml lipopolysaccharide in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE389", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS310", "description": "30 minute", "sample_id": [ "GSM5661", "GSM5662", "GSM5663" ], "type": "time", "id": "GDS310_1" }, { "dataset_id": "GDS310", "description": "60 minute", "sample_id": [ "GSM5664", "GSM5665", "GSM5666" ], "type": "time", "id": "GDS310_2" }, { "dataset_id": "GDS310", "description": "120 minute", "sample_id": [ "GSM5667", "GSM5668", "GSM5669" ], "type": "time", "id": "GDS310_3" }, { "dataset_id": "GDS310", "description": "240 minute", "sample_id": [ "GSM5670", "GSM5671", "GSM5672" ], "type": "time", "id": "GDS310_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS310", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS310.tab", "compression": "gz" } ], [ [ "GDS3100.tab" ], { "title": "Skeletal muscles of postmenopausal women with and without hormone replacement", "description": "Analysis of skeletal muscles of postmenopausal women treated with hormone replacement therapy (HRT) or with a placebo. Menopause is accompanied by age-associated changes in muscle structure and function. Results provide insight into the effect of HRT and estrogen deprivation on skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "17985945", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE6348", "order": "none", "update_date": "Dec 05 2007", "subsets": [ { "dataset_id": "GDS3100", "description": "placebo", "sample_id": [ "GSM146723", "GSM146725", "GSM146733", "GSM146734", "GSM146741", "GSM146742", "GSM146763", "GSM146764", "GSM146769", "GSM146770" ], "type": "protocol", "id": "GDS3100_1" }, { "dataset_id": "GDS3100", "description": "hormone replacement therapy", "sample_id": [ "GSM146717", "GSM146720", "GSM146731", "GSM146732", "GSM146735", "GSM146736", "GSM146737", "GSM146738", "GSM146739", "GSM146740", "GSM146743", "GSM146762", "GSM146765", "GSM146766", "GSM146767", "GSM146768", "GSM146771", "GSM146772", "GSM146773", "GSM146774" ], "type": "protocol", "id": "GDS3100_2" }, { "dataset_id": "GDS3100", "description": "before treatment", "sample_id": [ "GSM146717", "GSM146723", "GSM146731", "GSM146733", "GSM146735", "GSM146737", "GSM146739", "GSM146741", "GSM146743", "GSM146763", "GSM146765", "GSM146767", "GSM146769", "GSM146771", "GSM146773" ], "type": "other", "id": "GDS3100_3" }, { "dataset_id": "GDS3100", "description": "during treatment", "sample_id": [ "GSM146720", "GSM146725", "GSM146732", "GSM146734", "GSM146736", "GSM146738", "GSM146740", "GSM146742", "GSM146762", "GSM146764", "GSM146766", "GSM146768", "GSM146770", "GSM146772", "GSM146774" ], "type": "other", "id": "GDS3100_4" }, { "dataset_id": "GDS3100", "description": "subject 370", "sample_id": [ "GSM146717", "GSM146720" ], "type": "individual", "id": "GDS3100_5" }, { "dataset_id": "GDS3100", "description": "subject 440", "sample_id": [ "GSM146723", "GSM146725" ], "type": "individual", "id": "GDS3100_6" }, { "dataset_id": "GDS3100", "description": "subject 824", "sample_id": [ "GSM146731", "GSM146732" ], "type": "individual", "id": "GDS3100_7" }, { "dataset_id": "GDS3100", "description": "subject 1302", "sample_id": [ "GSM146733", "GSM146734" ], "type": "individual", "id": "GDS3100_8" }, { "dataset_id": "GDS3100", "description": "subject 937", "sample_id": [ "GSM146735", "GSM146736" ], "type": "individual", "id": "GDS3100_9" }, { "dataset_id": "GDS3100", "description": "subject 941", "sample_id": [ "GSM146737", "GSM146738" ], "type": "individual", "id": "GDS3100_10" }, { "dataset_id": "GDS3100", "description": "subject 1057", "sample_id": [ "GSM146739", "GSM146740" ], "type": "individual", "id": "GDS3100_11" }, { "dataset_id": "GDS3100", "description": "subject 1296", "sample_id": [ "GSM146741", "GSM146742" ], "type": "individual", "id": "GDS3100_12" }, { "dataset_id": "GDS3100", "description": "subject 145", "sample_id": [ "GSM146743", "GSM146762" ], "type": "individual", "id": "GDS3100_13" }, { "dataset_id": "GDS3100", "description": "subject 268", "sample_id": [ "GSM146763", "GSM146764" ], "type": "individual", "id": "GDS3100_14" }, { "dataset_id": "GDS3100", "description": "subject 551", "sample_id": [ "GSM146765", "GSM146766" ], "type": "individual", "id": "GDS3100_15" }, { "dataset_id": "GDS3100", "description": "subject 13", "sample_id": [ "GSM146767", "GSM146768" ], "type": "individual", "id": "GDS3100_16" }, { "dataset_id": "GDS3100", "description": "subject 94", "sample_id": [ "GSM146769", "GSM146770" ], "type": "individual", "id": "GDS3100_17" }, { "dataset_id": "GDS3100", "description": "subject 1092", "sample_id": [ "GSM146771", "GSM146772" ], "type": "individual", "id": "GDS3100_18" }, { "dataset_id": "GDS3100", "description": "subject 1216", "sample_id": [ "GSM146773", "GSM146774" ], "type": "individual", "id": "GDS3100_19" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS3100", "version": 1.0, "instances": "30", "variables": 22010, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3100.tab", "compression": "gz" } ], [ [ "GDS3101.tab" ], { "title": "Non-small cell lung carcinoma cell line response to cisplatin", "description": "Analysis of cisplatin-resistant A549 lung adenocarcinoma cell line treated with cisplatin, a chemotherapy drug. Its cytotoxic effects are likely due to the DNA damage it induces in cells. Results provide insight into molecular mechanisms underlying the response of A549 to cisplatin insult.", "type": "Expression profiling by array", "pubmed_id": "18074354", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6410", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3101", "description": "control", "sample_id": [ "GSM147889", "GSM147890", "GSM147891" ], "type": "agent", "id": "GDS3101_1" }, { "dataset_id": "GDS3101", "description": "cisplatin", "sample_id": [ "GSM147892", "GSM147893", "GSM147894" ], "type": "agent", "id": "GDS3101_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS3101", "version": 1.0, "instances": "6", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3101.tab", "compression": "gz" } ], [ [ "GDS3102.tab" ], { "title": "Caloric restriction effect on the aged heart and adipose tissue", "description": "Analysis of hearts and white adipose tissues of 28 month old male animals fed a calorie restricted diet since 4 months of age. Sustained caloric restriction (CR) extends lifespan in animal models. Results provide insight into the molecular basis of CR-induced lifespan extension.", "type": "Expression profiling by array", "pubmed_id": "17874999", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE6718", "order": "none", "update_date": "Dec 10 2007", "subsets": [ { "dataset_id": "GDS3102", "description": "control diet", "sample_id": [ "GSM154896", "GSM154897", "GSM154898", "GSM154899", "GSM154900", "GSM154901", "GSM154902", "GSM154903", "GSM154904", "GSM154905", "GSM154906", "GSM154907", "GSM154908", "GSM154918", "GSM154919", "GSM154920", "GSM154921", "GSM154922", "GSM154924", "GSM154925", "GSM154929", "GSM154930", "GSM154931", "GSM154932", "GSM154933" ], "type": "growth protocol", "id": "GDS3102_1" }, { "dataset_id": "GDS3102", "description": "caloric restricted diet", "sample_id": [ "GSM154909", "GSM154910", "GSM154911", "GSM154912", "GSM154913", "GSM154914", "GSM154915", "GSM154916", "GSM154917", "GSM154923", "GSM154926", "GSM154927", "GSM154928", "GSM154934" ], "type": "growth protocol", "id": "GDS3102_2" }, { "dataset_id": "GDS3102", "description": "4 mo", "sample_id": [ "GSM154903", "GSM154904", "GSM154905", "GSM154906", "GSM154907", "GSM154908", "GSM154920", "GSM154921", "GSM154922", "GSM154924", "GSM154925", "GSM154932", "GSM154933" ], "type": "age", "id": "GDS3102_3" }, { "dataset_id": "GDS3102", "description": "28 mo", "sample_id": [ "GSM154896", "GSM154897", "GSM154898", "GSM154899", "GSM154900", "GSM154901", "GSM154902", "GSM154910", "GSM154911", "GSM154912", "GSM154913", "GSM154914", "GSM154915", "GSM154916", "GSM154917", "GSM154918", "GSM154919", "GSM154923", "GSM154926", "GSM154927", "GSM154928", "GSM154929", "GSM154930", "GSM154909", "GSM154931", "GSM154934" ], "type": "age", "id": "GDS3102_4" }, { "dataset_id": "GDS3102", "description": "heart", "sample_id": [ "GSM154896", "GSM154897", "GSM154898", "GSM154899", "GSM154900", "GSM154901", "GSM154902", "GSM154903", "GSM154904", "GSM154905", "GSM154906", "GSM154907", "GSM154908", "GSM154909", "GSM154910", "GSM154911", "GSM154912", "GSM154913", "GSM154914", "GSM154915" ], "type": "tissue", "id": "GDS3102_5" }, { "dataset_id": "GDS3102", "description": "white adipose tissue", "sample_id": [ "GSM154916", "GSM154917", "GSM154918", "GSM154919", "GSM154920", "GSM154921", "GSM154922", "GSM154923", "GSM154924", "GSM154925", "GSM154926", "GSM154927", "GSM154928", "GSM154929", "GSM154930", "GSM154931", "GSM154932", "GSM154933", "GSM154934" ], "type": "tissue", "id": "GDS3102_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3102", "version": 1.0, "instances": "39", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3102.tab", "compression": "gz" } ], [ [ "GDS3103.tab" ], { "title": "Liver response to a high cholesterol diet and phenobarbital", "description": "Analysis of livers from animals treated with phenobarbital or fed a high cholesterol diet for 7 days. Results provide insight into the molecular mechanisms underlying the effects of these exogenous sources on cholesterol homeostasis and drug metabolism.", "type": "Expression profiling by array", "pubmed_id": "18261244", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE6721", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3103", "description": "control", "sample_id": [ "GSM154968", "GSM154969", "GSM154970", "GSM154971" ], "type": "agent", "id": "GDS3103_1" }, { "dataset_id": "GDS3103", "description": "cholesterol", "sample_id": [ "GSM154510", "GSM154961", "GSM154962", "GSM154963" ], "type": "agent", "id": "GDS3103_2" }, { "dataset_id": "GDS3103", "description": "phenobarbital", "sample_id": [ "GSM154964", "GSM154965", "GSM154966", "GSM154967" ], "type": "agent", "id": "GDS3103_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3103", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3103.tab", "compression": "gz" } ], [ [ "GDS3104.tab" ], { "title": "Insulin-resistant polycystic ovary syndrome: muscle", "description": "Analysis of vastus lateralis muscles from women with insulin-resistant polycystic ovary syndrome (PCOS). Insulin resistance in skeletal muscles is a risk factor for the development of type 2 diabetes in women with PCOS. Results provide insight into the pathogenesis of insulin resistance in PCOS.", "type": "Expression profiling by array", "pubmed_id": "17563058", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE6798", "order": "none", "update_date": "Dec 10 2007", "subsets": [ { "dataset_id": "GDS3104", "description": "control", "sample_id": [ "GSM155631", "GSM155643", "GSM155644", "GSM155729", "GSM156170", "GSM156171", "GSM156176", "GSM156177", "GSM156178", "GSM156179", "GSM156180", "GSM156181", "GSM156184" ], "type": "disease state", "id": "GDS3104_1" }, { "dataset_id": "GDS3104", "description": "insulin-resistant polycystic ovary syndrome", "sample_id": [ "GSM156186", "GSM156187", "GSM156510", "GSM156511", "GSM156512", "GSM156749", "GSM156750", "GSM156751", "GSM156752", "GSM156753", "GSM156763", "GSM156946", "GSM156948", "GSM156949", "GSM156950", "GSM156951" ], "type": "disease state", "id": "GDS3104_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3104", "version": 1.0, "instances": "29", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3104.tab", "compression": "gz" } ], [ [ "GDS3105.tab" ], { "title": "Cimicifuga racemosa extract effect on breast cancer cell line MCF-7", "description": "Analysis of MCF-7 breast cancer cells treated with a Cimicifuga racemosa extract. Extracts from the C. racemosa rhizome are used as an herbal alternative to hormone replacement therapy for alleviation of postmenopausal disorders. Results provide insight into the extract's molecular mode of action.", "type": "Expression profiling by array", "pubmed_id": "17880733", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE6800", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3105", "description": "solvent control", "sample_id": [ "GSM155006", "GSM155007" ], "type": "agent", "id": "GDS3105_1" }, { "dataset_id": "GDS3105", "description": "estradiol", "sample_id": [ "GSM155008", "GSM155009" ], "type": "agent", "id": "GDS3105_2" }, { "dataset_id": "GDS3105", "description": "tamoxifen", "sample_id": [ "GSM155012", "GSM155013" ], "type": "agent", "id": "GDS3105_3" }, { "dataset_id": "GDS3105", "description": "Cimicifuga racemosa extract", "sample_id": [ "GSM154972", "GSM155005" ], "type": "agent", "id": "GDS3105_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3105", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3105.tab", "compression": "gz" } ], [ [ "GDS3106.tab" ], { "title": "Stat3 deficiency effect on pulmonary alveolar type II epithelial cells", "description": "Analysis of type II alveolar cells lacking signal transducer and activator of transcription 3 (Stat3). STAT3 mediates gene expression in response to numerous growth factors and cytokines, playing an important role in many cellular processes. Results provide insight into the role of Stat3 in lung.", "type": "Expression profiling by array", "pubmed_id": "18070348", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6846", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3106", "description": "control", "sample_id": [ "GSM157835", "GSM157836", "GSM157837" ], "type": "genotype/variation", "id": "GDS3106_1" }, { "dataset_id": "GDS3106", "description": "Stat3 null", "sample_id": [ "GSM157806", "GSM157807", "GSM157834" ], "type": "genotype/variation", "id": "GDS3106_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3106", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3106.tab", "compression": "gz" } ], [ [ "GDS3107.tab" ], { "title": "Suprachiasmatic nucleus response to a light pulse", "description": "Analysis of suprachiasmatic nuclei (SCNs) of animals exposed to a 30 minute light pulse 1 hour after lights off. Circadian rhythms in mammals are driven by a clock located in the SCN. Results provide insight into the molecular events governing the response of the SCN to photic input.", "type": "Expression profiling by array", "pubmed_id": "18021443", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6904", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3107", "description": "control", "sample_id": [ "GSM159292", "GSM159293", "GSM159294" ], "type": "protocol", "id": "GDS3107_1" }, { "dataset_id": "GDS3107", "description": "light", "sample_id": [ "GSM159295", "GSM159296", "GSM159297" ], "type": "protocol", "id": "GDS3107_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3107", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3107.tab", "compression": "gz" } ], [ [ "GDS3108.tab" ], { "title": "Alpha 2B-adrenoceptor deficient embryo and its placenta", "description": "Analysis of placentas of embryonic day E10.5 mutant embryos lacking alpha 2B-adrenoceptor (Adra2b). Adra2b-/- deficient embryos develop a defect in fetal and maternal vessel formation in the placenta labyrinth at E10.5. Results provide insight into the role of Adra2b in placental development.", "type": "Expression profiling by array", "pubmed_id": "17673674", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6909", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3108", "description": "wild type", "sample_id": [ "GSM159348", "GSM159349", "GSM159350" ], "type": "genotype/variation", "id": "GDS3108_1" }, { "dataset_id": "GDS3108", "description": "Adra2b null", "sample_id": [ "GSM159345", "GSM159346", "GSM159347" ], "type": "genotype/variation", "id": "GDS3108_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3108", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3108.tab", "compression": "gz" } ], [ [ "GDS3109.tab" ], { "title": "Cirrhotic liver response to the antiangiongenic agent Sunitinib", "description": "Analysis of cirrhotic livers from animals treated with antioangeogenic agent Sunitinib. In cirrhosis, pathological processes such as inflammation and pathological angiogenesis are closely integrated. Results provide insight into the utility of targeting angiogenesis in the treatment of cirrhosis.", "type": "Expression profiling by array", "pubmed_id": "17935226", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE6929", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3109", "description": "control", "sample_id": [ "GSM159830", "GSM159833", "GSM159834", "GSM159835" ], "type": "agent", "id": "GDS3109_1" }, { "dataset_id": "GDS3109", "description": "Sunitinib", "sample_id": [ "GSM159831", "GSM159832", "GSM159837", "GSM159838" ], "type": "agent", "id": "GDS3109_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3109", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3109.tab", "compression": "gz" } ], [ [ "GDS311.tab" ], { "title": "Ligand screen in B cells: leukotriene B4", "description": "Temporal analysis of effects induced by 1 uM leukotriene B4 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE390", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS311", "description": "30 minute", "sample_id": [ "GSM5673", "GSM5674", "GSM5675" ], "type": "time", "id": "GDS311_1" }, { "dataset_id": "GDS311", "description": "60 minute", "sample_id": [ "GSM5676", "GSM5677", "GSM5678" ], "type": "time", "id": "GDS311_2" }, { "dataset_id": "GDS311", "description": "120 minute", "sample_id": [ "GSM5679", "GSM5680", "GSM5681" ], "type": "time", "id": "GDS311_3" }, { "dataset_id": "GDS311", "description": "240 minute", "sample_id": [ "GSM5682", "GSM5683", "GSM5684" ], "type": "time", "id": "GDS311_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS311", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS311.tab", "compression": "gz" } ], [ [ "GDS3110.tab" ], { "title": "Hypothalamic hamartoma and central precocious puberty", "description": "Analysis of hypothalamic hamartomas (HHs) from patients with or without central precious puberty (CPP). HHs are congenital lesions composed of neurons and astroglia often associated with CPP. Results provide insight into the mechanisms that initiate normal puberty.", "type": "Expression profiling by array", "pubmed_id": "18059092", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7142", "order": "none", "update_date": "Dec 10 2007", "subsets": [ { "dataset_id": "GDS3110", "description": "no central precocious puberty", "sample_id": [ "GSM172075", "GSM172076", "GSM172077" ], "type": "disease state", "id": "GDS3110_1" }, { "dataset_id": "GDS3110", "description": "central precocious puberty", "sample_id": [ "GSM172074" ], "type": "disease state", "id": "GDS3110_2" }, { "dataset_id": "GDS3110", "description": "male", "sample_id": [ "GSM172074", "GSM172075", "GSM172077" ], "type": "gender", "id": "GDS3110_3" }, { "dataset_id": "GDS3110", "description": "female", "sample_id": [ "GSM172076" ], "type": "gender", "id": "GDS3110_4" }, { "dataset_id": "GDS3110", "description": "child", "sample_id": [ "GSM172074", "GSM172075", "GSM172076" ], "type": "development stage", "id": "GDS3110_5" }, { "dataset_id": "GDS3110", "description": "adult", "sample_id": [ "GSM172077" ], "type": "development stage", "id": "GDS3110_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3110", "version": 1.0, "instances": "4", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3110.tab", "compression": "gz" } ], [ [ "GDS3111.tab" ], { "title": "Prostate cancer cell line response to dihydrotestosterone: time course", "description": "Analysis of LNCaP prostate cancer cells treated with the androgen dihydrotestosterone (DHT). DHT binds to androgen receptor (AR), a ligand dependent transcription factor that plays a key role in prostate cancer. Results provide insight into mechanisms underlying AR-dependent prostate cancer growth.", "type": "Expression profiling by array", "pubmed_id": "17679089", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE7868", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3111", "description": "control", "sample_id": [ "GSM190812", "GSM190815", "GSM190818" ], "type": "agent", "id": "GDS3111_1" }, { "dataset_id": "GDS3111", "description": "dihydrotestosterone", "sample_id": [ "GSM190813", "GSM190816", "GSM190819", "GSM190814", "GSM190817", "GSM190820" ], "type": "agent", "id": "GDS3111_2" }, { "dataset_id": "GDS3111", "description": "0 h", "sample_id": [ "GSM190812", "GSM190815", "GSM190818" ], "type": "time", "id": "GDS3111_3" }, { "dataset_id": "GDS3111", "description": "4 h", "sample_id": [ "GSM190813", "GSM190816", "GSM190819" ], "type": "time", "id": "GDS3111_4" }, { "dataset_id": "GDS3111", "description": "16 h", "sample_id": [ "GSM190814", "GSM190817", "GSM190820" ], "type": "time", "id": "GDS3111_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3111", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3111.tab", "compression": "gz" } ], [ [ "GDS3112.tab" ], { "title": "Hypoxia effect on cultured aortic smooth muscle cells", "description": "Analysis of aortic smooth muscle cells incubated for 16 hrs or 48 hrs under hypoxic conditions (1% or 3%O2). Smooth muscle cell proliferation and survival are modulated by hypoxia. Results provide insight into molecular mechanisms underlying oxygen regulation of arterial smooth muscle cells.", "type": "Expression profiling by array", "pubmed_id": "18055518", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE4725", "order": "none", "update_date": "Mar 10 2008", "subsets": [ { "dataset_id": "GDS3112", "description": "hypoxia", "sample_id": [ "GSM107839", "GSM107840", "GSM107843", "GSM107844" ], "type": "stress", "id": "GDS3112_1" }, { "dataset_id": "GDS3112", "description": "normoxia", "sample_id": [ "GSM105362", "GSM107841" ], "type": "stress", "id": "GDS3112_2" }, { "dataset_id": "GDS3112", "description": "1% oxygen", "sample_id": [ "GSM107843", "GSM107844" ], "type": "dose", "id": "GDS3112_3" }, { "dataset_id": "GDS3112", "description": "3% oxygen", "sample_id": [ "GSM107839", "GSM107840" ], "type": "dose", "id": "GDS3112_4" }, { "dataset_id": "GDS3112", "description": "control", "sample_id": [ "GSM105362", "GSM107841" ], "type": "dose", "id": "GDS3112_5" }, { "dataset_id": "GDS3112", "description": "16 h", "sample_id": [ "GSM107839", "GSM107843" ], "type": "time", "id": "GDS3112_6" }, { "dataset_id": "GDS3112", "description": "48 h", "sample_id": [ "GSM105362", "GSM107840", "GSM107841", "GSM107844" ], "type": "time", "id": "GDS3112_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3112", "version": 1.0, "instances": "6", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3112.tab", "compression": "gz" } ], [ [ "GDS3113.tab" ], { "title": "Various normal tissues", "description": "Analysis of various normal tissues. Results provide insight into housekeeping and tissue-specific genes.", "type": "Expression profiling by array", "pubmed_id": "19014478", "platform": "GPL2986", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "count", "reference_series": "GSE7905", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3113", "description": "fetal liver", "sample_id": [ "GSM194459", "GSM194460", "GSM194461" ], "type": "tissue", "id": "GDS3113_1" }, { "dataset_id": "GDS3113", "description": "lung", "sample_id": [ "GSM194462", "GSM194463", "GSM194464" ], "type": "tissue", "id": "GDS3113_2" }, { "dataset_id": "GDS3113", "description": "liver", "sample_id": [ "GSM194465", "GSM194466", "GSM194467" ], "type": "tissue", "id": "GDS3113_3" }, { "dataset_id": "GDS3113", "description": "Universal Human Reference RNA", "sample_id": [ "GSM194468", "GSM194469", "GSM194470" ], "type": "tissue", "id": "GDS3113_4" }, { "dataset_id": "GDS3113", "description": "brain", "sample_id": [ "GSM194471", "GSM194472", "GSM194473" ], "type": "tissue", "id": "GDS3113_5" }, { "dataset_id": "GDS3113", "description": "fetal brain", "sample_id": [ "GSM194474", "GSM194475", "GSM194476" ], "type": "tissue", "id": "GDS3113_6" }, { "dataset_id": "GDS3113", "description": "prostate", "sample_id": [ "GSM194477", "GSM194478", "GSM194479" ], "type": "tissue", "id": "GDS3113_7" }, { "dataset_id": "GDS3113", "description": "skeletal muscle", "sample_id": [ "GSM194480", "GSM194481", "GSM194482" ], "type": "tissue", "id": "GDS3113_8" }, { "dataset_id": "GDS3113", "description": "heart", "sample_id": [ "GSM194483", "GSM194484", "GSM194485" ], "type": "tissue", "id": "GDS3113_9" }, { "dataset_id": "GDS3113", "description": "spinal cord", "sample_id": [ "GSM194486", "GSM194487", "GSM194488" ], "type": "tissue", "id": "GDS3113_10" }, { "dataset_id": "GDS3113", "description": "tonsil", "sample_id": [ "GSM194489", "GSM194490", "GSM194491" ], "type": "tissue", "id": "GDS3113_11" }, { "dataset_id": "GDS3113", "description": "trachea", "sample_id": [ "GSM194492", "GSM194493", "GSM194494" ], "type": "tissue", "id": "GDS3113_12" }, { "dataset_id": "GDS3113", "description": "uterus", "sample_id": [ "GSM194495", "GSM194496", "GSM194497" ], "type": "tissue", "id": "GDS3113_13" }, { "dataset_id": "GDS3113", "description": "small intestine", "sample_id": [ "GSM194498", "GSM194499", "GSM194500" ], "type": "tissue", "id": "GDS3113_14" }, { "dataset_id": "GDS3113", "description": "skin", "sample_id": [ "GSM194501", "GSM194502", "GSM194503" ], "type": "tissue", "id": "GDS3113_15" }, { "dataset_id": "GDS3113", "description": "ovary", "sample_id": [ "GSM194504", "GSM194505", "GSM194506" ], "type": "tissue", "id": "GDS3113_16" }, { "dataset_id": "GDS3113", "description": "testis", "sample_id": [ "GSM194507", "GSM194508", "GSM194509" ], "type": "tissue", "id": "GDS3113_17" }, { "dataset_id": "GDS3113", "description": "pancreas", "sample_id": [ "GSM194510", "GSM194511", "GSM194512" ], "type": "tissue", "id": "GDS3113_18" }, { "dataset_id": "GDS3113", "description": "thymus", "sample_id": [ "GSM194513", "GSM194514", "GSM194515" ], "type": "tissue", "id": "GDS3113_19" }, { "dataset_id": "GDS3113", "description": "fetal thymus", "sample_id": [ "GSM194516", "GSM194517", "GSM194518" ], "type": "tissue", "id": "GDS3113_20" }, { "dataset_id": "GDS3113", "description": "kidney", "sample_id": [ "GSM194519", "GSM194520", "GSM194521" ], "type": "tissue", "id": "GDS3113_21" }, { "dataset_id": "GDS3113", "description": "fetal kidney", "sample_id": [ "GSM194522", "GSM194523", "GSM194524" ], "type": "tissue", "id": "GDS3113_22" }, { "dataset_id": "GDS3113", "description": "placenta", "sample_id": [ "GSM194525", "GSM194526", "GSM194527" ], "type": "tissue", "id": "GDS3113_23" }, { "dataset_id": "GDS3113", "description": "thyroid", "sample_id": [ "GSM194528", "GSM194529", "GSM194530" ], "type": "tissue", "id": "GDS3113_24" }, { "dataset_id": "GDS3113", "description": "salivary gland", "sample_id": [ "GSM194531", "GSM194532", "GSM194533" ], "type": "tissue", "id": "GDS3113_25" }, { "dataset_id": "GDS3113", "description": "colon", "sample_id": [ "GSM194534", "GSM194535", "GSM194536" ], "type": "tissue", "id": "GDS3113_26" }, { "dataset_id": "GDS3113", "description": "mammary gland", "sample_id": [ "GSM194537", "GSM194538", "GSM194539" ], "type": "tissue", "id": "GDS3113_27" }, { "dataset_id": "GDS3113", "description": "spleen", "sample_id": [ "GSM194540", "GSM194541", "GSM194542" ], "type": "tissue", "id": "GDS3113_28" }, { "dataset_id": "GDS3113", "description": "adrenal gland", "sample_id": [ "GSM194543", "GSM194544", "GSM194545" ], "type": "tissue", "id": "GDS3113_29" }, { "dataset_id": "GDS3113", "description": "peripheral blood lymphocyte", "sample_id": [ "GSM194546", "GSM194547", "GSM194548" ], "type": "tissue", "id": "GDS3113_30" }, { "dataset_id": "GDS3113", "description": "bone marrow", "sample_id": [ "GSM194549", "GSM194550", "GSM194551" ], "type": "tissue", "id": "GDS3113_31" }, { "dataset_id": "GDS3113", "description": "retina", "sample_id": [ "GSM194552", "GSM194553", "GSM194554" ], "type": "tissue", "id": "GDS3113_32" } ], "taxid": "9606", "genes": 30389, "aggregation_function": "mean", "name": "GDS3113", "version": 1.0, "instances": "96", "variables": 30391, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3113.tab", "compression": "gz" } ], [ [ "GDS3114.tab" ], { "title": "Chronic hypoxia effect on the developing brain", "description": "Analysis of brain cortices and hypothalami of developing animals subjected to chronic consistent hypoxia (CCH) or chronic intermittent hypoxia (CIH). Results provide insight into the molecular mechanisms underlying the long-lasting pathological effects of hypoxia on postnatal brain development.", "type": "Expression profiling by array", "pubmed_id": "18056785", "platform": "GPL5402", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46115", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE8262", "order": "none", "update_date": "Dec 12 2008", "subsets": [ { "dataset_id": "GDS3114", "description": "cortex", "sample_id": [ "GSM205270", "GSM205271", "GSM205272", "GSM205273", "GSM205274", "GSM205275", "GSM205276", "GSM205277", "GSM205278" ], "type": "tissue", "id": "GDS3114_1" }, { "dataset_id": "GDS3114", "description": "hippocampus", "sample_id": [ "GSM205279", "GSM205280", "GSM205281", "GSM205282", "GSM205283", "GSM205284", "GSM205285", "GSM205286", "GSM205287" ], "type": "tissue", "id": "GDS3114_2" }, { "dataset_id": "GDS3114", "description": "control", "sample_id": [ "GSM205270", "GSM205271", "GSM205272", "GSM205279", "GSM205280", "GSM205281" ], "type": "stress", "id": "GDS3114_3" }, { "dataset_id": "GDS3114", "description": "chronic consistent hypoxia", "sample_id": [ "GSM205273", "GSM205274", "GSM205275", "GSM205282", "GSM205283", "GSM205284" ], "type": "stress", "id": "GDS3114_4" }, { "dataset_id": "GDS3114", "description": "chronic intermittent hypoxia", "sample_id": [ "GSM205276", "GSM205277", "GSM205278", "GSM205285", "GSM205286", "GSM205287" ], "type": "stress", "id": "GDS3114_5" } ], "taxid": "10090", "genes": 33094, "aggregation_function": "mean", "name": "GDS3114", "version": 1.0, "instances": "18", "variables": 33097, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3114.tab", "compression": "gz" } ], [ [ "GDS3115.tab" ], { "title": "Heart failure: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells from chronic heart failure (CHF) patients with ischemic or non-ischemic cardiomyopathy (ICM or NICM). Results provide insight into diagnostic/prognostic markers and CHF gene expression profiles.", "type": "Expression profiling by array", "pubmed_id": "19336532", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE9128", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3115", "description": "control", "sample_id": [ "GSM231003", "GSM231004", "GSM231005" ], "type": "disease state", "id": "GDS3115_1" }, { "dataset_id": "GDS3115", "description": "non-ischemic heart failure", "sample_id": [ "GSM231006", "GSM231007", "GSM231008", "GSM231009" ], "type": "disease state", "id": "GDS3115_2" }, { "dataset_id": "GDS3115", "description": "ischemic heart failure", "sample_id": [ "GSM231010", "GSM231011", "GSM231012", "GSM231013" ], "type": "disease state", "id": "GDS3115_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3115", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3115.tab", "compression": "gz" } ], [ [ "GDS3116.tab" ], { "title": "Letrozole effect on breast cancer tumors", "description": "Analysis of breast cancer tumors following treatment with letrozole for 14 days. The aromatase inhibitor letrozole is an anti-estrogen drug used to treat postmenopausal women with breast cancer. Results provide insight into the molecular mechanism of action of letrozole in breast cancer.", "type": "Expression profiling by array", "pubmed_id": [ "17885619", "20646288" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "116", "value_type": "count", "reference_series": "GSE5462", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3116", "description": "baseline", "sample_id": [ "GSM125123", "GSM125125", "GSM125127", "GSM125129", "GSM125131", "GSM125133", "GSM125135", "GSM125137", "GSM125139", "GSM125141", "GSM125143", "GSM125145", "GSM125147", "GSM125149", "GSM125151", "GSM125153", "GSM125155", "GSM125157", "GSM125159", "GSM125161", "GSM125163", "GSM125165", "GSM125167", "GSM125169", "GSM125171", "GSM125173", "GSM125175", "GSM125177", "GSM125179", "GSM125181", "GSM125183", "GSM125185", "GSM125187", "GSM125189", "GSM125191", "GSM125193", "GSM125195", "GSM125197", "GSM125199", "GSM125201", "GSM125203", "GSM125205", "GSM125207", "GSM125209", "GSM125211", "GSM125213", "GSM125215", "GSM125217", "GSM125219", "GSM125221", "GSM125223", "GSM125225", "GSM125227", "GSM125229", "GSM125231", "GSM125233", "GSM125235", "GSM125237" ], "type": "agent", "id": "GDS3116_1" }, { "dataset_id": "GDS3116", "description": "letrozole", "sample_id": [ "GSM125124", "GSM125126", "GSM125128", "GSM125130", "GSM125132", "GSM125134", "GSM125136", "GSM125138", "GSM125140", "GSM125142", "GSM125144", "GSM125146", "GSM125148", "GSM125150", "GSM125152", "GSM125154", "GSM125156", "GSM125158", "GSM125160", "GSM125162", "GSM125164", "GSM125166", "GSM125168", "GSM125170", "GSM125172", "GSM125174", "GSM125176", "GSM125178", "GSM125180", "GSM125182", "GSM125184", "GSM125186", "GSM125188", "GSM125190", "GSM125192", "GSM125194", "GSM125196", "GSM125198", "GSM125200", "GSM125202", "GSM125204", "GSM125206", "GSM125208", "GSM125210", "GSM125212", "GSM125214", "GSM125216", "GSM125218", "GSM125220", "GSM125222", "GSM125224", "GSM125226", "GSM125228", "GSM125230", "GSM125232", "GSM125234", "GSM125236", "GSM125238" ], "type": "agent", "id": "GDS3116_2" }, { "dataset_id": "GDS3116", "description": "10", "sample_id": [ "GSM125123", "GSM125124" ], "type": "individual", "id": "GDS3116_3" }, { "dataset_id": "GDS3116", "description": "11", "sample_id": [ "GSM125125", "GSM125126" ], "type": "individual", "id": "GDS3116_4" }, { "dataset_id": "GDS3116", "description": "12", "sample_id": [ "GSM125127", "GSM125128" ], "type": "individual", "id": "GDS3116_5" }, { "dataset_id": "GDS3116", "description": "13", "sample_id": [ "GSM125129", "GSM125130" ], "type": "individual", "id": "GDS3116_6" }, { "dataset_id": "GDS3116", "description": "14", "sample_id": [ "GSM125131", "GSM125132" ], "type": "individual", "id": "GDS3116_7" }, { "dataset_id": "GDS3116", "description": "15", "sample_id": [ "GSM125133", "GSM125134" ], "type": "individual", "id": "GDS3116_8" }, { "dataset_id": "GDS3116", "description": "16", "sample_id": [ "GSM125135", "GSM125136" ], "type": "individual", "id": "GDS3116_9" }, { "dataset_id": "GDS3116", "description": "17", "sample_id": [ "GSM125137", "GSM125138" ], "type": "individual", "id": "GDS3116_10" }, { "dataset_id": "GDS3116", "description": "18", "sample_id": [ "GSM125139", "GSM125140" ], "type": "individual", "id": "GDS3116_11" }, { "dataset_id": "GDS3116", "description": "19", "sample_id": [ "GSM125141", "GSM125142" ], "type": "individual", "id": "GDS3116_12" }, { "dataset_id": "GDS3116", "description": "20", "sample_id": [ "GSM125143", "GSM125144" ], "type": "individual", "id": "GDS3116_13" }, { "dataset_id": "GDS3116", "description": "21", "sample_id": [ "GSM125145", "GSM125146" ], "type": "individual", "id": "GDS3116_14" }, { "dataset_id": "GDS3116", "description": "22", "sample_id": [ "GSM125147", "GSM125148" ], "type": "individual", "id": "GDS3116_15" }, { "dataset_id": "GDS3116", "description": "23", "sample_id": [ "GSM125149", "GSM125150" ], "type": "individual", "id": "GDS3116_16" }, { "dataset_id": "GDS3116", "description": "24", "sample_id": [ "GSM125151", "GSM125152" ], "type": "individual", "id": "GDS3116_17" }, { "dataset_id": "GDS3116", "description": "25", "sample_id": [ "GSM125153", "GSM125154" ], "type": "individual", "id": "GDS3116_18" }, { "dataset_id": "GDS3116", "description": "27", "sample_id": [ "GSM125155", "GSM125156" ], "type": "individual", "id": "GDS3116_19" }, { "dataset_id": "GDS3116", "description": "28", "sample_id": [ "GSM125157", "GSM125158" ], "type": "individual", "id": "GDS3116_20" }, { "dataset_id": "GDS3116", "description": "29", "sample_id": [ "GSM125159", "GSM125160" ], "type": "individual", "id": "GDS3116_21" }, { "dataset_id": "GDS3116", "description": "2", "sample_id": [ "GSM125161", "GSM125162" ], "type": "individual", "id": "GDS3116_22" }, { "dataset_id": "GDS3116", "description": "30", "sample_id": [ "GSM125163", "GSM125164" ], "type": "individual", "id": "GDS3116_23" }, { "dataset_id": "GDS3116", "description": "31", "sample_id": [ "GSM125165", "GSM125166" ], "type": "individual", "id": "GDS3116_24" }, { "dataset_id": "GDS3116", "description": "33", "sample_id": [ "GSM125167", "GSM125168" ], "type": "individual", "id": "GDS3116_25" }, { "dataset_id": "GDS3116", "description": "34", "sample_id": [ "GSM125169", "GSM125170" ], "type": "individual", "id": "GDS3116_26" }, { "dataset_id": "GDS3116", "description": "35", "sample_id": [ "GSM125171", "GSM125172" ], "type": "individual", "id": "GDS3116_27" }, { "dataset_id": "GDS3116", "description": "36", "sample_id": [ "GSM125173", "GSM125174" ], "type": "individual", "id": "GDS3116_28" }, { "dataset_id": "GDS3116", "description": "37", "sample_id": [ "GSM125175", "GSM125176" ], "type": "individual", "id": "GDS3116_29" }, { "dataset_id": "GDS3116", "description": "38", "sample_id": [ "GSM125177", "GSM125178" ], "type": "individual", "id": "GDS3116_30" }, { "dataset_id": "GDS3116", "description": "39", "sample_id": [ "GSM125179", "GSM125180" ], "type": "individual", "id": "GDS3116_31" }, { "dataset_id": "GDS3116", "description": "40", "sample_id": [ "GSM125181", "GSM125182" ], "type": "individual", "id": "GDS3116_32" }, { "dataset_id": "GDS3116", "description": "41", "sample_id": [ "GSM125183", "GSM125184" ], "type": "individual", "id": "GDS3116_33" }, { "dataset_id": "GDS3116", "description": "42", "sample_id": [ "GSM125185", "GSM125186" ], "type": "individual", "id": "GDS3116_34" }, { "dataset_id": "GDS3116", "description": "44", "sample_id": [ "GSM125187", "GSM125188" ], "type": "individual", "id": "GDS3116_35" }, { "dataset_id": "GDS3116", "description": "45", "sample_id": [ "GSM125189", "GSM125190" ], "type": "individual", "id": "GDS3116_36" }, { "dataset_id": "GDS3116", "description": "46", "sample_id": [ "GSM125191", "GSM125192" ], "type": "individual", "id": "GDS3116_37" }, { "dataset_id": "GDS3116", "description": "47", "sample_id": [ "GSM125193", "GSM125194" ], "type": "individual", "id": "GDS3116_38" }, { "dataset_id": "GDS3116", "description": "48", "sample_id": [ "GSM125195", "GSM125196" ], "type": "individual", "id": "GDS3116_39" }, { "dataset_id": "GDS3116", "description": "49", "sample_id": [ "GSM125197", "GSM125198" ], "type": "individual", "id": "GDS3116_40" }, { "dataset_id": "GDS3116", "description": "4", "sample_id": [ "GSM125199", "GSM125200" ], "type": "individual", "id": "GDS3116_41" }, { "dataset_id": "GDS3116", "description": "50", "sample_id": [ "GSM125201", "GSM125202" ], "type": "individual", "id": "GDS3116_42" }, { "dataset_id": "GDS3116", "description": "51", "sample_id": [ "GSM125203", "GSM125204" ], "type": "individual", "id": "GDS3116_43" }, { "dataset_id": "GDS3116", "description": "52", "sample_id": [ "GSM125205", "GSM125206" ], "type": "individual", "id": "GDS3116_44" }, { "dataset_id": "GDS3116", "description": "53", "sample_id": [ "GSM125207", "GSM125208" ], "type": "individual", "id": "GDS3116_45" }, { "dataset_id": "GDS3116", "description": "55", "sample_id": [ "GSM125209", "GSM125210" ], "type": "individual", "id": "GDS3116_46" }, { "dataset_id": "GDS3116", "description": "56", "sample_id": [ "GSM125211", "GSM125212" ], "type": "individual", "id": "GDS3116_47" }, { "dataset_id": "GDS3116", "description": "57", "sample_id": [ "GSM125213", "GSM125214" ], "type": "individual", "id": "GDS3116_48" }, { "dataset_id": "GDS3116", "description": "58", "sample_id": [ "GSM125215", "GSM125216" ], "type": "individual", "id": "GDS3116_49" }, { "dataset_id": "GDS3116", "description": "59", "sample_id": [ "GSM125217", "GSM125218" ], "type": "individual", "id": "GDS3116_50" }, { "dataset_id": "GDS3116", "description": "5", "sample_id": [ "GSM125219", "GSM125220" ], "type": "individual", "id": "GDS3116_51" }, { "dataset_id": "GDS3116", "description": "60", "sample_id": [ "GSM125221", "GSM125222" ], "type": "individual", "id": "GDS3116_52" }, { "dataset_id": "GDS3116", "description": "63", "sample_id": [ "GSM125223", "GSM125224" ], "type": "individual", "id": "GDS3116_53" }, { "dataset_id": "GDS3116", "description": "64", "sample_id": [ "GSM125225", "GSM125226" ], "type": "individual", "id": "GDS3116_54" }, { "dataset_id": "GDS3116", "description": "65", "sample_id": [ "GSM125227", "GSM125228" ], "type": "individual", "id": "GDS3116_55" }, { "dataset_id": "GDS3116", "description": "68", "sample_id": [ "GSM125229", "GSM125230" ], "type": "individual", "id": "GDS3116_56" }, { "dataset_id": "GDS3116", "description": "69", "sample_id": [ "GSM125231", "GSM125232" ], "type": "individual", "id": "GDS3116_57" }, { "dataset_id": "GDS3116", "description": "7", "sample_id": [ "GSM125233", "GSM125234" ], "type": "individual", "id": "GDS3116_58" }, { "dataset_id": "GDS3116", "description": "8", "sample_id": [ "GSM125235", "GSM125236" ], "type": "individual", "id": "GDS3116_59" }, { "dataset_id": "GDS3116", "description": "9", "sample_id": [ "GSM125237", "GSM125238" ], "type": "individual", "id": "GDS3116_60" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3116", "version": 1.0, "instances": "116", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3116.tab", "compression": "gz" } ], [ [ "GDS3117.tab" ], { "title": "Cardiomyocyte response to biomechanical stretch in vitro", "description": "Analysis of neonatal ventricular cardiomyocytes subjected to both biomechanical stretch stress and pharmacological (i.e., phenylephrine, PE) induction of hypertrophy. Results provide insight into how mechanical stress is sensed and transduced in cardiomyocytes on the molecular level.", "type": "Expression profiling by array", "pubmed_id": "18158353", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE5996", "order": "none", "update_date": "Dec 15 2008", "subsets": [ { "dataset_id": "GDS3117", "description": "control", "sample_id": [ "GSM139268", "GSM139269" ], "type": "protocol", "id": "GDS3117_1" }, { "dataset_id": "GDS3117", "description": "phenylephrine", "sample_id": [ "GSM139270", "GSM139271" ], "type": "protocol", "id": "GDS3117_2" }, { "dataset_id": "GDS3117", "description": "stretch", "sample_id": [ "GSM139272", "GSM139273" ], "type": "protocol", "id": "GDS3117_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3117", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3117.tab", "compression": "gz" } ], [ [ "GDS3118.tab" ], { "title": "Cerebral malaria model", "description": "Analysis of C57BL/6 and CBA/CaH animals infected with Plasmodium berghei ANKA to induce experimental cerebral malaria (ECM). CM is a complication of P. falciparum infection. ECM in B6 and CBA displays many features of human CM. Results provide insight into the development of treatments for human CM.", "type": "Expression profiling by array", "pubmed_id": "18474652", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE6019", "order": "none", "update_date": "Dec 15 2008", "subsets": [ { "dataset_id": "GDS3118", "description": "C57BL/6", "sample_id": [ "GSM139758", "GSM139759" ], "type": "strain", "id": "GDS3118_1" }, { "dataset_id": "GDS3118", "description": "CBA/CaH", "sample_id": [ "GSM139538", "GSM139757" ], "type": "strain", "id": "GDS3118_2" }, { "dataset_id": "GDS3118", "description": "control", "sample_id": [ "GSM139538", "GSM139758" ], "type": "disease state", "id": "GDS3118_3" }, { "dataset_id": "GDS3118", "description": "experimental cerebral malaria", "sample_id": [ "GSM139757", "GSM139759" ], "type": "disease state", "id": "GDS3118_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3118", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3118.tab", "compression": "gz" } ], [ [ "GDS3119.tab" ], { "title": "Ulcerative colitis", "description": "Analysis of colonic mucosa samples with or without signs of inflammation from patients with ulcerative colitis (UC), a type of inflammatory bowel disease (IBD). Results provide insight into the molecular mechanisms contributing to the development of inflammation in UC.", "type": "Expression profiling by array", "pubmed_id": "19177426", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE9452", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3119", "description": "control", "sample_id": [ "GSM240023", "GSM240024", "GSM240025", "GSM240026", "GSM240027" ], "type": "disease state", "id": "GDS3119_1" }, { "dataset_id": "GDS3119", "description": "ulcerative colitis", "sample_id": [ "GSM239617", "GSM239618", "GSM239714", "GSM239716", "GSM239717", "GSM239718", "GSM239719", "GSM239720", "GSM239723", "GSM239725", "GSM239726", "GSM239727", "GSM239729", "GSM239730", "GSM239731", "GSM239732", "GSM240022", "GSM240028", "GSM240029", "GSM240030", "GSM240031" ], "type": "disease state", "id": "GDS3119_2" }, { "dataset_id": "GDS3119", "description": "inflamed", "sample_id": [ "GSM239617", "GSM239618", "GSM239714", "GSM239716", "GSM239717", "GSM239718", "GSM239719", "GSM239720" ], "type": "specimen", "id": "GDS3119_3" }, { "dataset_id": "GDS3119", "description": "non-inflamed", "sample_id": [ "GSM240023", "GSM240024", "GSM240025", "GSM240026", "GSM240027", "GSM239723", "GSM239725", "GSM239726", "GSM239727", "GSM239729", "GSM239730", "GSM239731", "GSM239732", "GSM240022", "GSM240028", "GSM240029", "GSM240030", "GSM240031" ], "type": "specimen", "id": "GDS3119_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3119", "version": 1.0, "instances": "26", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3119.tab", "compression": "gz" } ], [ [ "GDS312.tab" ], { "title": "Ligand screen in B cells: macrophage inflammatory protein-3", "description": "Temporal analysis of effects induced by 120 nM macrophage inflammatory protein-3 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE391", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS312", "description": "30 minute", "sample_id": [ "GSM5686", "GSM5687", "GSM5688" ], "type": "time", "id": "GDS312_1" }, { "dataset_id": "GDS312", "description": "60 minute", "sample_id": [ "GSM5689", "GSM5690", "GSM5691" ], "type": "time", "id": "GDS312_2" }, { "dataset_id": "GDS312", "description": "120 minute", "sample_id": [ "GSM5692", "GSM5693", "GSM5694" ], "type": "time", "id": "GDS312_3" }, { "dataset_id": "GDS312", "description": "240 minute", "sample_id": [ "GSM5695", "GSM5696", "GSM5697" ], "type": "time", "id": "GDS312_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS312", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS312.tab", "compression": "gz" } ], [ [ "GDS3124.tab" ], { "title": "Radioresistant tumor response to ionizing radiation", "description": "Analysis of nu61 radioresistant tumors following exposure to ionizing radiation. Nu61 tumors derived from the radiosensitive squamous cell carcinoma cell line SCC61. Results provide insight into the molecular basis of acquired tumor radioresistance.", "type": "Expression profiling by array", "pubmed_id": [ "14755057", "17909027" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9712", "order": "none", "update_date": "Jan 04 2008", "subsets": [ { "dataset_id": "GDS3124", "description": "radiosensitive", "sample_id": [ "GSM245395", "GSM245396", "GSM245397", "GSM245398", "GSM245399", "GSM245400" ], "type": "development stage", "id": "GDS3124_1" }, { "dataset_id": "GDS3124", "description": "radioresistant", "sample_id": [ "GSM245389", "GSM245390", "GSM245391", "GSM245392", "GSM245393", "GSM245394" ], "type": "development stage", "id": "GDS3124_2" }, { "dataset_id": "GDS3124", "description": "unexposed", "sample_id": [ "GSM245389", "GSM245390", "GSM245391", "GSM245395", "GSM245396", "GSM245397" ], "type": "agent", "id": "GDS3124_3" }, { "dataset_id": "GDS3124", "description": "radiation", "sample_id": [ "GSM245392", "GSM245393", "GSM245394", "GSM245398", "GSM245399", "GSM245400" ], "type": "agent", "id": "GDS3124_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3124", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3124.tab", "compression": "gz" } ], [ [ "GDS3125.tab" ], { "title": "Radioresistant tumor response to ionizing radiation: time course", "description": "Analysis of nu61 radioresistant tumors 5 and 24 hours following exposure to ionizing radiation. Nu61 tumors derived from the radiosensitive squamous cell carcinoma cell line SCC61. Results provide insight into the molecular basis of acquired tumor radioresistance.", "type": "Expression profiling by array", "pubmed_id": [ "14755057", "17909027" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE9713", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3125", "description": "radiosensitive", "sample_id": [ "GSM245404", "GSM245405", "GSM245406", "GSM245410", "GSM245411", "GSM245412", "GSM245416", "GSM245417", "GSM245418" ], "type": "development stage", "id": "GDS3125_1" }, { "dataset_id": "GDS3125", "description": "radioresistant", "sample_id": [ "GSM245401", "GSM245402", "GSM245403", "GSM245407", "GSM245408", "GSM245409", "GSM245413", "GSM245414", "GSM245415" ], "type": "development stage", "id": "GDS3125_2" }, { "dataset_id": "GDS3125", "description": "unexposed", "sample_id": [ "GSM245401", "GSM245402", "GSM245403", "GSM245404", "GSM245405", "GSM245406" ], "type": "agent", "id": "GDS3125_3" }, { "dataset_id": "GDS3125", "description": "radiation", "sample_id": [ "GSM245407", "GSM245408", "GSM245409", "GSM245410", "GSM245411", "GSM245412", "GSM245413", "GSM245414", "GSM245415", "GSM245416", "GSM245417", "GSM245418" ], "type": "agent", "id": "GDS3125_4" }, { "dataset_id": "GDS3125", "description": "control", "sample_id": [ "GSM245401", "GSM245402", "GSM245403", "GSM245404", "GSM245405", "GSM245406" ], "type": "time", "id": "GDS3125_5" }, { "dataset_id": "GDS3125", "description": "5 h", "sample_id": [ "GSM245407", "GSM245408", "GSM245409", "GSM245410", "GSM245411", "GSM245412" ], "type": "time", "id": "GDS3125_6" }, { "dataset_id": "GDS3125", "description": "24 h", "sample_id": [ "GSM245413", "GSM245414", "GSM245415", "GSM245416", "GSM245417", "GSM245418" ], "type": "time", "id": "GDS3125_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3125", "version": 1.0, "instances": "18", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3125.tab", "compression": "gz" } ], [ [ "GDS3126.tab" ], { "title": "Radioresistant tumor response to interferons", "description": "Analysis of nu61 radioresistant tumors following treatment with a mixture of interferons (IFNs) alpha, beta, and gamma. Nu61 tumors derived from the radiosensitive squamous cell carcinoma cell line SCC61. Results provide insight into the role of the IFN signaling pathway in tumor radioresistance.", "type": "Expression profiling by array", "pubmed_id": [ "14755057", "17909027" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE9714", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3126", "description": "radiosensitive", "sample_id": [ "GSM245423", "GSM245424", "GSM245425", "GSM245426" ], "type": "development stage", "id": "GDS3126_1" }, { "dataset_id": "GDS3126", "description": "radioresistant", "sample_id": [ "GSM245419", "GSM245420", "GSM245421", "GSM245422" ], "type": "development stage", "id": "GDS3126_2" }, { "dataset_id": "GDS3126", "description": "untreated", "sample_id": [ "GSM245419", "GSM245420", "GSM245423", "GSM245424" ], "type": "agent", "id": "GDS3126_3" }, { "dataset_id": "GDS3126", "description": "interferon", "sample_id": [ "GSM245421", "GSM245422", "GSM245425", "GSM245426" ], "type": "agent", "id": "GDS3126_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3126", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3126.tab", "compression": "gz" } ], [ [ "GDS3127.tab" ], { "title": "Diesel exhaust inhalation effect on peripheral blood mononuclear cells: time course", "description": "Analysis of peripheral blood mononuclear cells from individuals exposed to diesel exhaust (DE), a major source of urban fine particulate matter (FPM). Exposure to ambient FPM is associated with cardiovascular disease. Results provide insight into molecular mechanisms underlying such health effects.", "type": "Expression profiling by array", "pubmed_id": "17987463", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE7462", "order": "none", "update_date": "Dec 19 2008", "subsets": [ { "dataset_id": "GDS3127", "description": "control", "sample_id": [ "GSM180605", "GSM180606", "GSM180610", "GSM180611", "GSM180612", "GSM180619", "GSM180620", "GSM180621", "GSM180622", "GSM180623" ], "type": "agent", "id": "GDS3127_1" }, { "dataset_id": "GDS3127", "description": "diesel exhaust", "sample_id": [ "GSM180603", "GSM180604", "GSM180607", "GSM180608", "GSM180609", "GSM180613", "GSM180614", "GSM180615", "GSM180616", "GSM180617", "GSM180618", "GSM180624", "GSM180625" ], "type": "agent", "id": "GDS3127_2" }, { "dataset_id": "GDS3127", "description": "0 h", "sample_id": [ "GSM180603", "GSM180605", "GSM180607", "GSM180610", "GSM180613", "GSM180616", "GSM180619", "GSM180622", "GSM180624" ], "type": "time", "id": "GDS3127_3" }, { "dataset_id": "GDS3127", "description": "4 h", "sample_id": [ "GSM180604", "GSM180606", "GSM180608", "GSM180611", "GSM180614", "GSM180617", "GSM180620", "GSM180623", "GSM180625" ], "type": "time", "id": "GDS3127_4" }, { "dataset_id": "GDS3127", "description": "22 h", "sample_id": [ "GSM180609", "GSM180612", "GSM180615", "GSM180618", "GSM180621" ], "type": "time", "id": "GDS3127_5" }, { "dataset_id": "GDS3127", "description": "subject 10", "sample_id": [ "GSM180603", "GSM180604", "GSM180605", "GSM180606" ], "type": "individual", "id": "GDS3127_6" }, { "dataset_id": "GDS3127", "description": "subject 16", "sample_id": [ "GSM180607", "GSM180608", "GSM180609", "GSM180610", "GSM180611", "GSM180612" ], "type": "individual", "id": "GDS3127_7" }, { "dataset_id": "GDS3127", "description": "subject 18", "sample_id": [ "GSM180613", "GSM180614", "GSM180615" ], "type": "individual", "id": "GDS3127_8" }, { "dataset_id": "GDS3127", "description": "subject 29", "sample_id": [ "GSM180616", "GSM180617", "GSM180618", "GSM180619", "GSM180620", "GSM180621" ], "type": "individual", "id": "GDS3127_9" }, { "dataset_id": "GDS3127", "description": "subject 35", "sample_id": [ "GSM180622", "GSM180623", "GSM180624", "GSM180625" ], "type": "individual", "id": "GDS3127_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3127", "version": 1.0, "instances": "23", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3127.tab", "compression": "gz" } ], [ [ "GDS3128.tab" ], { "title": "Parkinson's disease: substantia nigra (HG-U133A)", "description": "Analysis of medial and lateral substantia nigras (SNs) from post-mortem brain samples obtained from individuals with sporadic Parkinson's disease (PD). The SN exhibits extensive tissue damage in PD. Results provide insight into the pathogenesis of PD.", "type": "Expression profiling by array", "pubmed_id": "16344956", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE8397", "order": "none", "update_date": "Dec 23 2008", "subsets": [ { "dataset_id": "GDS3128", "description": "control", "sample_id": [ "GSM208622", "GSM208623", "GSM208624", "GSM208630", "GSM208631", "GSM208632", "GSM208633", "GSM208634", "GSM208635", "GSM208645", "GSM208646", "GSM208647", "GSM208648", "GSM208649", "GSM208650", "GSM208651", "GSM208652", "GSM208668" ], "type": "disease state", "id": "GDS3128_1" }, { "dataset_id": "GDS3128", "description": "Parkinson's disease", "sample_id": [ "GSM208625", "GSM208626", "GSM208627", "GSM208628", "GSM208629", "GSM208636", "GSM208637", "GSM208638", "GSM208639", "GSM208640", "GSM208641", "GSM208642", "GSM208643", "GSM208644", "GSM208653", "GSM208654", "GSM208655", "GSM208656", "GSM208657", "GSM208658", "GSM208659", "GSM208660", "GSM208661", "GSM208662", "GSM208663", "GSM208664", "GSM208665", "GSM208666", "GSM208667" ], "type": "disease state", "id": "GDS3128_2" }, { "dataset_id": "GDS3128", "description": "superior frontal gyrus", "sample_id": [ "GSM208622", "GSM208623", "GSM208624", "GSM208625", "GSM208626", "GSM208627", "GSM208628", "GSM208629" ], "type": "tissue", "id": "GDS3128_3" }, { "dataset_id": "GDS3128", "description": "lateral substantia nigra", "sample_id": [ "GSM208630", "GSM208631", "GSM208632", "GSM208633", "GSM208634", "GSM208635", "GSM208636", "GSM208637", "GSM208638", "GSM208639", "GSM208640", "GSM208641", "GSM208642", "GSM208643", "GSM208644", "GSM208645" ], "type": "tissue", "id": "GDS3128_4" }, { "dataset_id": "GDS3128", "description": "medial substantia nigra", "sample_id": [ "GSM208646", "GSM208647", "GSM208648", "GSM208649", "GSM208650", "GSM208651", "GSM208652", "GSM208653", "GSM208654", "GSM208655", "GSM208656", "GSM208657", "GSM208658", "GSM208659", "GSM208660", "GSM208661", "GSM208662", "GSM208663", "GSM208664", "GSM208665", "GSM208666", "GSM208667", "GSM208668" ], "type": "tissue", "id": "GDS3128_5" }, { "dataset_id": "GDS3128", "description": "case 01", "sample_id": [ "GSM208625", "GSM208636", "GSM208653" ], "type": "individual", "id": "GDS3128_6" }, { "dataset_id": "GDS3128", "description": "case 02", "sample_id": [ "GSM208637", "GSM208654" ], "type": "individual", "id": "GDS3128_7" }, { "dataset_id": "GDS3128", "description": "case 04", "sample_id": [ "GSM208626", "GSM208638", "GSM208655" ], "type": "individual", "id": "GDS3128_8" }, { "dataset_id": "GDS3128", "description": "case 07", "sample_id": [ "GSM208639", "GSM208656" ], "type": "individual", "id": "GDS3128_9" }, { "dataset_id": "GDS3128", "description": "case 09", "sample_id": [ "GSM208640", "GSM208657" ], "type": "individual", "id": "GDS3128_10" }, { "dataset_id": "GDS3128", "description": "case 10", "sample_id": [ "GSM208641", "GSM208658" ], "type": "individual", "id": "GDS3128_11" }, { "dataset_id": "GDS3128", "description": "case 16", "sample_id": [ "GSM208642", "GSM208659" ], "type": "individual", "id": "GDS3128_12" }, { "dataset_id": "GDS3128", "description": "case 20", "sample_id": [ "GSM208660" ], "type": "individual", "id": "GDS3128_13" }, { "dataset_id": "GDS3128", "description": "case 21", "sample_id": [ "GSM208661" ], "type": "individual", "id": "GDS3128_14" }, { "dataset_id": "GDS3128", "description": "case 22", "sample_id": [ "GSM208662" ], "type": "individual", "id": "GDS3128_15" }, { "dataset_id": "GDS3128", "description": "case 28", "sample_id": [ "GSM208643", "GSM208663" ], "type": "individual", "id": "GDS3128_16" }, { "dataset_id": "GDS3128", "description": "case 29", "sample_id": [ "GSM208627", "GSM208644", "GSM208664" ], "type": "individual", "id": "GDS3128_17" }, { "dataset_id": "GDS3128", "description": "case 32", "sample_id": [ "GSM208665" ], "type": "individual", "id": "GDS3128_18" }, { "dataset_id": "GDS3128", "description": "case 34", "sample_id": [ "GSM208628", "GSM208666" ], "type": "individual", "id": "GDS3128_19" }, { "dataset_id": "GDS3128", "description": "case 36", "sample_id": [ "GSM208629", "GSM208667" ], "type": "individual", "id": "GDS3128_20" }, { "dataset_id": "GDS3128", "description": "unaffected 10", "sample_id": [ "GSM208630", "GSM208646" ], "type": "individual", "id": "GDS3128_21" }, { "dataset_id": "GDS3128", "description": "unaffected 2", "sample_id": [ "GSM208622", "GSM208631", "GSM208647" ], "type": "individual", "id": "GDS3128_22" }, { "dataset_id": "GDS3128", "description": "unaffected 3", "sample_id": [ "GSM208623", "GSM208648" ], "type": "individual", "id": "GDS3128_23" }, { "dataset_id": "GDS3128", "description": "unaffected 4", "sample_id": [ "GSM208632", "GSM208649" ], "type": "individual", "id": "GDS3128_24" }, { "dataset_id": "GDS3128", "description": "unaffected 8", "sample_id": [ "GSM208633", "GSM208650" ], "type": "individual", "id": "GDS3128_25" }, { "dataset_id": "GDS3128", "description": "unaffected 9", "sample_id": [ "GSM208624", "GSM208634", "GSM208651" ], "type": "individual", "id": "GDS3128_26" }, { "dataset_id": "GDS3128", "description": "unaffected MS155", "sample_id": [ "GSM208635", "GSM208652" ], "type": "individual", "id": "GDS3128_27" }, { "dataset_id": "GDS3128", "description": "unaffected PDC1", "sample_id": [ "GSM208645", "GSM208668" ], "type": "individual", "id": "GDS3128_28" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3128", "version": 1.0, "instances": "47", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3128.tab", "compression": "gz" } ], [ [ "GDS3129.tab" ], { "title": "Parkinson's disease: substantia nigra (HG-U133B)", "description": "Analysis of medial and lateral substantia nigras (SNs) from post-mortem brain samples obtained from individuals with sporadic Parkinson's disease (PD). The SN exhibits extensive tissue damage in PD. Results provide insight into the pathogenesis of PD.", "type": "Expression profiling by array", "pubmed_id": "16344956", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE8397", "order": "none", "update_date": "Dec 23 2008", "subsets": [ { "dataset_id": "GDS3129", "description": "control", "sample_id": [ "GSM208669", "GSM208670", "GSM208671", "GSM208677", "GSM208678", "GSM208679", "GSM208680", "GSM208682", "GSM208681", "GSM208692", "GSM208693", "GSM208694", "GSM208695", "GSM208696", "GSM208697", "GSM208698", "GSM208699", "GSM208715" ], "type": "disease state", "id": "GDS3129_1" }, { "dataset_id": "GDS3129", "description": "Parkinson's disease", "sample_id": [ "GSM208672", "GSM208673", "GSM208674", "GSM208675", "GSM208676", "GSM208683", "GSM208684", "GSM208685", "GSM208686", "GSM208687", "GSM208688", "GSM208689", "GSM208690", "GSM208691", "GSM208700", "GSM208701", "GSM208702", "GSM208703", "GSM208704", "GSM208705", "GSM208706", "GSM208707", "GSM208708", "GSM208709", "GSM208710", "GSM208711", "GSM208712", "GSM208713", "GSM208714" ], "type": "disease state", "id": "GDS3129_2" }, { "dataset_id": "GDS3129", "description": "superior frontal gyrus", "sample_id": [ "GSM208669", "GSM208670", "GSM208671", "GSM208672", "GSM208673", "GSM208674", "GSM208675", "GSM208676" ], "type": "tissue", "id": "GDS3129_3" }, { "dataset_id": "GDS3129", "description": "lateral substantia nigra", "sample_id": [ "GSM208677", "GSM208678", "GSM208679", "GSM208680", "GSM208681", "GSM208682", "GSM208683", "GSM208684", "GSM208685", "GSM208686", "GSM208687", "GSM208688", "GSM208689", "GSM208690", "GSM208691", "GSM208692" ], "type": "tissue", "id": "GDS3129_4" }, { "dataset_id": "GDS3129", "description": "medial substantia nigra", "sample_id": [ "GSM208693", "GSM208694", "GSM208695", "GSM208696", "GSM208697", "GSM208698", "GSM208699", "GSM208700", "GSM208701", "GSM208702", "GSM208703", "GSM208704", "GSM208705", "GSM208706", "GSM208707", "GSM208708", "GSM208709", "GSM208710", "GSM208711", "GSM208712", "GSM208713", "GSM208714", "GSM208715" ], "type": "tissue", "id": "GDS3129_5" }, { "dataset_id": "GDS3129", "description": "case 01", "sample_id": [ "GSM208672", "GSM208683", "GSM208700" ], "type": "individual", "id": "GDS3129_6" }, { "dataset_id": "GDS3129", "description": "case 02", "sample_id": [ "GSM208684", "GSM208701" ], "type": "individual", "id": "GDS3129_7" }, { "dataset_id": "GDS3129", "description": "case 04", "sample_id": [ "GSM208673", "GSM208685", "GSM208702" ], "type": "individual", "id": "GDS3129_8" }, { "dataset_id": "GDS3129", "description": "case 07", "sample_id": [ "GSM208686", "GSM208703" ], "type": "individual", "id": "GDS3129_9" }, { "dataset_id": "GDS3129", "description": "case 09", "sample_id": [ "GSM208687", "GSM208704" ], "type": "individual", "id": "GDS3129_10" }, { "dataset_id": "GDS3129", "description": "case 10", "sample_id": [ "GSM208688", "GSM208705" ], "type": "individual", "id": "GDS3129_11" }, { "dataset_id": "GDS3129", "description": "case 16", "sample_id": [ "GSM208689", "GSM208706" ], "type": "individual", "id": "GDS3129_12" }, { "dataset_id": "GDS3129", "description": "case 20", "sample_id": [ "GSM208707" ], "type": "individual", "id": "GDS3129_13" }, { "dataset_id": "GDS3129", "description": "case 21", "sample_id": [ "GSM208708" ], "type": "individual", "id": "GDS3129_14" }, { "dataset_id": "GDS3129", "description": "case 22", "sample_id": [ "GSM208709" ], "type": "individual", "id": "GDS3129_15" }, { "dataset_id": "GDS3129", "description": "case 28", "sample_id": [ "GSM208690", "GSM208710" ], "type": "individual", "id": "GDS3129_16" }, { "dataset_id": "GDS3129", "description": "case 29", "sample_id": [ "GSM208674", "GSM208691", "GSM208711" ], "type": "individual", "id": "GDS3129_17" }, { "dataset_id": "GDS3129", "description": "case 32", "sample_id": [ "GSM208712" ], "type": "individual", "id": "GDS3129_18" }, { "dataset_id": "GDS3129", "description": "case 34", "sample_id": [ "GSM208675", "GSM208713" ], "type": "individual", "id": "GDS3129_19" }, { "dataset_id": "GDS3129", "description": "case 36", "sample_id": [ "GSM208676", "GSM208714" ], "type": "individual", "id": "GDS3129_20" }, { "dataset_id": "GDS3129", "description": "unaffected 10", "sample_id": [ "GSM208677", "GSM208693" ], "type": "individual", "id": "GDS3129_21" }, { "dataset_id": "GDS3129", "description": "unaffected 2", "sample_id": [ "GSM208669", "GSM208678", "GSM208694" ], "type": "individual", "id": "GDS3129_22" }, { "dataset_id": "GDS3129", "description": "unaffected 3", "sample_id": [ "GSM208670", "GSM208695" ], "type": "individual", "id": "GDS3129_23" }, { "dataset_id": "GDS3129", "description": "unaffected 4", "sample_id": [ "GSM208679", "GSM208696" ], "type": "individual", "id": "GDS3129_24" }, { "dataset_id": "GDS3129", "description": "unaffected 8", "sample_id": [ "GSM208680", "GSM208697" ], "type": "individual", "id": "GDS3129_25" }, { "dataset_id": "GDS3129", "description": "unaffected 9", "sample_id": [ "GSM208671", "GSM208681", "GSM208698" ], "type": "individual", "id": "GDS3129_26" }, { "dataset_id": "GDS3129", "description": "unaffected MS155", "sample_id": [ "GSM208682", "GSM208699" ], "type": "individual", "id": "GDS3129_27" }, { "dataset_id": "GDS3129", "description": "unaffected PDC1", "sample_id": [ "GSM208692", "GSM208715" ], "type": "individual", "id": "GDS3129_28" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3129", "version": 1.0, "instances": "47", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3129.tab", "compression": "gz" } ], [ [ "GDS313.tab" ], { "title": "Ligand screen in B cells: nerve growth factor", "description": "Temporal analysis of effects induced by 8 nM nerve growth factor in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE392", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS313", "description": "30 minute", "sample_id": [ "GSM5685", "GSM5698", "GSM5699" ], "type": "time", "id": "GDS313_1" }, { "dataset_id": "GDS313", "description": "60 minute", "sample_id": [ "GSM5700", "GSM5701", "GSM5702" ], "type": "time", "id": "GDS313_2" }, { "dataset_id": "GDS313", "description": "120 minute", "sample_id": [ "GSM5703", "GSM5704", "GSM5705" ], "type": "time", "id": "GDS313_3" }, { "dataset_id": "GDS313", "description": "240 minute", "sample_id": [ "GSM5706", "GSM5707", "GSM5708" ], "type": "time", "id": "GDS313_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS313", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS313.tab", "compression": "gz" } ], [ [ "GDS3130.tab" ], { "title": "CA1 and CA3 hippocampal slice cultures response to oxidative stress: time course", "description": "Anlaysis of CA1 and CA3 hippocampal slice cultures for up to 12 hours following treatment with duroquinone to induce oxidative stress (OS). Neurons in the CA1 region are sensitive to OS, while those in CA3 are resistant. Results provide insight into the molecular basis of this difference.", "type": "Expression profiling by array", "pubmed_id": "17553663", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE6693", "order": "none", "update_date": "Jan 08 2008", "subsets": [ { "dataset_id": "GDS3130", "description": "CA1", "sample_id": [ "GSM154469", "GSM154470", "GSM154471", "GSM154472", "GSM154473", "GSM154474", "GSM154475", "GSM154476" ], "type": "tissue", "id": "GDS3130_1" }, { "dataset_id": "GDS3130", "description": "CA3", "sample_id": [ "GSM154477", "GSM154478", "GSM154479", "GSM154480", "GSM154481", "GSM154482", "GSM154483", "GSM154484" ], "type": "tissue", "id": "GDS3130_2" }, { "dataset_id": "GDS3130", "description": "control", "sample_id": [ "GSM154469", "GSM154473", "GSM154477", "GSM154481" ], "type": "time", "id": "GDS3130_3" }, { "dataset_id": "GDS3130", "description": "0.5 h", "sample_id": [ "GSM154470", "GSM154474", "GSM154478", "GSM154482" ], "type": "time", "id": "GDS3130_4" }, { "dataset_id": "GDS3130", "description": "3 h", "sample_id": [ "GSM154471", "GSM154475", "GSM154479", "GSM154483" ], "type": "time", "id": "GDS3130_5" }, { "dataset_id": "GDS3130", "description": "12 h", "sample_id": [ "GSM154472", "GSM154476", "GSM154480", "GSM154484" ], "type": "time", "id": "GDS3130_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3130", "version": 1.0, "instances": "16", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3130.tab", "compression": "gz" } ], [ [ "GDS3131.tab" ], { "title": "Hearts from low and high capacity runners with and without exercise training", "description": "Analysis of hearts from low (LCRs) and high capacity runners (HCRs) with or without exercise training. Aerobic capacity is a strong predictor of cardiovascular mortality. Results provide insight into the molecular basis for the difference in inborn aerobic capacity in the LCRs and HCRs.", "type": "Expression profiling by array", "pubmed_id": "18171719", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE9445", "order": "none", "update_date": "Dec 23 2008", "subsets": [ { "dataset_id": "GDS3131", "description": "low capacity runner", "sample_id": [ "GSM234617", "GSM234618", "GSM234619", "GSM234620", "GSM234622", "GSM234623", "GSM234625", "GSM234627" ], "type": "strain", "id": "GDS3131_1" }, { "dataset_id": "GDS3131", "description": "high capacity runner", "sample_id": [ "GSM232919", "GSM232920", "GSM232921", "GSM234612", "GSM234613", "GSM234614", "GSM234615", "GSM234616" ], "type": "strain", "id": "GDS3131_2" }, { "dataset_id": "GDS3131", "description": "sedentary", "sample_id": [ "GSM232919", "GSM232920", "GSM232921", "GSM234612", "GSM234617", "GSM234618", "GSM234619", "GSM234620" ], "type": "protocol", "id": "GDS3131_3" }, { "dataset_id": "GDS3131", "description": "exercise", "sample_id": [ "GSM234613", "GSM234614", "GSM234615", "GSM234616", "GSM234622", "GSM234623", "GSM234625", "GSM234627" ], "type": "protocol", "id": "GDS3131_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3131", "version": 1.0, "instances": "16", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3131.tab", "compression": "gz" } ], [ [ "GDS3132.tab" ], { "title": "Neonatal lung response to cigarette smoke", "description": "Analysis of lungs from 2 week old animals exposed to cigarette smoke (CS) daily since birth. During infancy, exposure of humans to CS is associated with decreased lung function and increased incidences of respiratory illnesses. Results provide insight into the neonatal pulmonary response to CS.", "type": "Expression profiling by array", "pubmed_id": "17975176", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7310", "order": "none", "update_date": "Dec 23 2008", "subsets": [ { "dataset_id": "GDS3132", "description": "control", "sample_id": [ "GSM176495", "GSM176496", "GSM176497", "GSM176498" ], "type": "agent", "id": "GDS3132_1" }, { "dataset_id": "GDS3132", "description": "cigarette smoke", "sample_id": [ "GSM176499", "GSM176500", "GSM176501", "GSM176502", "GSM176503", "GSM176504" ], "type": "agent", "id": "GDS3132_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3132", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3132.tab", "compression": "gz" } ], [ [ "GDS3133.tab" ], { "title": "Quercetin effect on the colonic mucosa", "description": "Analysis of distal colonic mucosa scraping from animals fed a diet supplemented with quercetin. Quercetin is one of the major flavonoids found in fruits and vegetables and is a component of dietary supplements for humans. Results provide insight into the effect of quercetin on the distal colon.", "type": "Expression profiling by array", "pubmed_id": "18095365", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7479", "order": "none", "update_date": "Jan 08 2008", "subsets": [ { "dataset_id": "GDS3133", "description": "control", "sample_id": [ "GSM180920", "GSM181037", "GSM181038", "GSM181039" ], "type": "agent", "id": "GDS3133_1" }, { "dataset_id": "GDS3133", "description": "quercetin", "sample_id": [ "GSM181040", "GSM181041", "GSM181042", "GSM181043" ], "type": "agent", "id": "GDS3133_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3133", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3133.tab", "compression": "gz" } ], [ [ "GDS3134.tab" ], { "title": "Moderate physical exercise training effect on the heart", "description": "Analysis of left heart ventricles of animals subjected to a moderate physical exercise regimen that induces cardioprotection. Results provide insight into the molecular basis of this cardioprotective effect.", "type": "Expression profiling by array", "pubmed_id": "19643001", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE7640", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3134", "description": "sedentary", "sample_id": [ "GSM184851", "GSM184852", "GSM184853", "GSM184854", "GSM184855", "GSM184856", "GSM184857", "GSM184858", "GSM184859", "GSM184860" ], "type": "protocol", "id": "GDS3134_1" }, { "dataset_id": "GDS3134", "description": "exercise", "sample_id": [ "GSM184861", "GSM184862", "GSM184863", "GSM184864", "GSM184865", "GSM184866", "GSM184867", "GSM184868", "GSM184869", "GSM184870" ], "type": "protocol", "id": "GDS3134_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3134", "version": 1.0, "instances": "20", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3134.tab", "compression": "gz" } ], [ [ "GDS3135.tab" ], { "title": "Brown adipose tissue response to fasting", "description": "Analysis of brown (BATs) and white adipose tissues (WATs) and livers of animals after a 24 hour fast. WAT stores and releases fat in response to nutritional needs, while BAT dissipates fat to produce heat. Results provide insight into the role of BAT in the adaptation to food deprivation.", "type": "Expression profiling by array", "pubmed_id": "18175912", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE7623", "order": "none", "update_date": "Dec 30 2008", "subsets": [ { "dataset_id": "GDS3135", "description": "brown adipose tissue", "sample_id": [ "GSM184414", "GSM184415", "GSM184416", "GSM184417", "GSM184418", "GSM184419", "GSM184420", "GSM184421" ], "type": "tissue", "id": "GDS3135_1" }, { "dataset_id": "GDS3135", "description": "white adipose tissue", "sample_id": [ "GSM184422", "GSM184423", "GSM184424", "GSM184425", "GSM184426", "GSM184427", "GSM184428", "GSM184429" ], "type": "tissue", "id": "GDS3135_2" }, { "dataset_id": "GDS3135", "description": "liver", "sample_id": [ "GSM184430", "GSM184431", "GSM184432", "GSM184433", "GSM184434", "GSM184435", "GSM184436", "GSM184437" ], "type": "tissue", "id": "GDS3135_3" }, { "dataset_id": "GDS3135", "description": "control", "sample_id": [ "GSM184414", "GSM184415", "GSM184416", "GSM184417", "GSM184422", "GSM184423", "GSM184424", "GSM184425", "GSM184430", "GSM184431", "GSM184432", "GSM184433" ], "type": "stress", "id": "GDS3135_4" }, { "dataset_id": "GDS3135", "description": "fasted", "sample_id": [ "GSM184418", "GSM184419", "GSM184420", "GSM184421", "GSM184426", "GSM184427", "GSM184428", "GSM184429", "GSM184434", "GSM184435", "GSM184436", "GSM184437" ], "type": "stress", "id": "GDS3135_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3135", "version": 1.0, "instances": "24", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3135.tab", "compression": "gz" } ], [ [ "GDS3137.tab" ], { "title": "Antifungal compound sampangine effect on Saccharomyces cerevisiea", "description": "Analysis of Saccharomyces cerevisiae cells treated with the antifungal compound sampangine. Sampangine exhibits strong inhibitory activity against opportunistic fungal pathogens such as Candida albicans. Using S. cerevisiae as a model, results provide insight into sampangine's mechanism of action.", "type": "Expression profiling by array", "pubmed_id": "18156292", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10073", "order": "none", "update_date": "Dec 30 2008", "subsets": [ { "dataset_id": "GDS3137", "description": "control", "sample_id": [ "GSM254768", "GSM254769", "GSM254770" ], "type": "agent", "id": "GDS3137_1" }, { "dataset_id": "GDS3137", "description": "sampangine", "sample_id": [ "GSM254771", "GSM254772", "GSM254773" ], "type": "agent", "id": "GDS3137_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3137", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3137.tab", "compression": "gz" } ], [ [ "GDS3138.tab" ], { "title": "Metastatic breast cancer cell line response to restored miR-335 expression", "description": "Analysis of breast cancer LM2 cells transfected with a vector expressing microRNA miR-335. LM2 is metastatic to lung. miR-335 expression is lost as breast cancer cells develop metastatic potential. Restoring miR-335 expression inhibits metastatic cell invasion of lung cancer cells.", "type": "Expression profiling by array", "pubmed_id": [ "18185580", "21289068" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9586", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3138", "description": "control", "sample_id": [ "GSM242136", "GSM242196" ], "type": "agent", "id": "GDS3138_1" }, { "dataset_id": "GDS3138", "description": "miR-335", "sample_id": [ "GSM242207", "GSM242208" ], "type": "agent", "id": "GDS3138_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3138", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3138.tab", "compression": "gz" } ], [ [ "GDS3139.tab" ], { "title": "Breast cancer: histologically normal breast epithelium", "description": "Analysis of histologically normal breast epithelia of breast cancer patients. Results provide insight into the molecular abnormalities in normal appearing breast epithelium in breast cancer and the roles these abnormalities play in carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "18058819", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE9574", "order": "none", "update_date": "Dec 30 2008", "subsets": [ { "dataset_id": "GDS3139", "description": "normal", "sample_id": [ "GSM241999", "GSM242000", "GSM242001", "GSM242002", "GSM242003", "GSM242004", "GSM242005", "GSM242006", "GSM242007", "GSM242008", "GSM242009", "GSM242010", "GSM242011", "GSM242012", "GSM242013" ], "type": "disease state", "id": "GDS3139_1" }, { "dataset_id": "GDS3139", "description": "cancer", "sample_id": [ "GSM242014", "GSM242015", "GSM242016", "GSM242017", "GSM242018", "GSM242019", "GSM242020", "GSM242021", "GSM242022", "GSM242023", "GSM242024", "GSM242025", "GSM242026", "GSM242027" ], "type": "disease state", "id": "GDS3139_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3139", "version": 1.0, "instances": "29", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3139.tab", "compression": "gz" } ], [ [ "GDS314.tab" ], { "title": "Ligand screen in B cells: neuropeptide Y", "description": "Temporal analysis of effects induced by 1 uM neuropeptide Y in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE393", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS314", "description": "30 minute", "sample_id": [ "GSM5709", "GSM5710", "GSM5711" ], "type": "time", "id": "GDS314_1" }, { "dataset_id": "GDS314", "description": "60 minute", "sample_id": [ "GSM5712", "GSM5713", "GSM5714" ], "type": "time", "id": "GDS314_2" }, { "dataset_id": "GDS314", "description": "120 minute", "sample_id": [ "GSM5715", "GSM5716", "GSM5717" ], "type": "time", "id": "GDS314_3" }, { "dataset_id": "GDS314", "description": "240 minute", "sample_id": [ "GSM5718", "GSM5719" ], "type": "time", "id": "GDS314_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS314", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS314.tab", "compression": "gz" } ], [ [ "GDS3140.tab" ], { "title": "Lithium-induced lifespan extension model", "description": "Analysis of Caenorhabditis elegans worms 48 hours following treatment with lithium. Chronic lithium treatment increased the lifespan of this organism. Results provide insight into the molecular basis of lithium\u2019s effect on lifespan.", "type": "Expression profiling by array", "pubmed_id": "17959600", "platform": "GPL5367", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22370", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE8058", "order": "none", "update_date": "Jan 15 2008", "subsets": [ { "dataset_id": "GDS3140", "description": "control", "sample_id": [ "GSM198946", "GSM198947", "GSM198948", "GSM198949", "GSM198950", "GSM198951" ], "type": "agent", "id": "GDS3140_1" }, { "dataset_id": "GDS3140", "description": "lithium", "sample_id": [ "GSM198952", "GSM198953", "GSM198954", "GSM198955", "GSM198956", "GSM198957" ], "type": "agent", "id": "GDS3140_2" } ], "taxid": "6239", "genes": 20307, "aggregation_function": "mean", "name": "GDS3140", "version": 1.0, "instances": "12", "variables": 20309, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3140.tab", "compression": "gz" } ], [ [ "GDS3141.tab" ], { "title": "Colorectal mucosae from various regions of the large intestine", "description": "Analysis of colorectal mucosae from various regions of the normal large intestine. Results provide insight into the range of variation of gene expression in normal tissues.", "type": "Expression profiling by array", "pubmed_id": "18056783", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE9254", "order": "none", "update_date": "Jan 15 2008", "subsets": [ { "dataset_id": "GDS3141", "description": "sigmoid colon", "sample_id": [ "GSM234909", "GSM234910", "GSM234916", "GSM234926" ], "type": "tissue", "id": "GDS3141_1" }, { "dataset_id": "GDS3141", "description": "rectum", "sample_id": [ "GSM234911", "GSM234914", "GSM234915", "GSM234923", "GSM234924", "GSM234925", "GSM234927" ], "type": "tissue", "id": "GDS3141_2" }, { "dataset_id": "GDS3141", "description": "ascending colon", "sample_id": [ "GSM234913", "GSM234918", "GSM234919" ], "type": "tissue", "id": "GDS3141_3" }, { "dataset_id": "GDS3141", "description": "cecum", "sample_id": [ "GSM234912", "GSM234917" ], "type": "tissue", "id": "GDS3141_4" }, { "dataset_id": "GDS3141", "description": "transverse colon", "sample_id": [ "GSM234920", "GSM234921", "GSM234922" ], "type": "tissue", "id": "GDS3141_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3141", "version": 1.0, "instances": "19", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3141.tab", "compression": "gz" } ], [ [ "GDS3142.tab" ], { "title": "Various tissues", "description": "Analysis of 22 different tissues from 10 to 12 week old C57BL/6 animals. Results provide insights into the practice of using housekeeping genes as reference genes.", "type": "Expression profiling by array", "pubmed_id": "18365009", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "70", "value_type": "count", "reference_series": "GSE9954", "order": "none", "update_date": "Dec 30 2008", "subsets": [ { "dataset_id": "GDS3142", "description": "diaphragm", "sample_id": [ "GSM252064", "GSM252065", "GSM252066" ], "type": "tissue", "id": "GDS3142_1" }, { "dataset_id": "GDS3142", "description": "spleen", "sample_id": [ "GSM252067", "GSM252068", "GSM252069" ], "type": "tissue", "id": "GDS3142_2" }, { "dataset_id": "GDS3142", "description": "muscle", "sample_id": [ "GSM252070", "GSM252071", "GSM252072", "GSM252073" ], "type": "tissue", "id": "GDS3142_3" }, { "dataset_id": "GDS3142", "description": "liver", "sample_id": [ "GSM252074", "GSM252075", "GSM252076" ], "type": "tissue", "id": "GDS3142_4" }, { "dataset_id": "GDS3142", "description": "brain", "sample_id": [ "GSM252077", "GSM252078", "GSM252079" ], "type": "tissue", "id": "GDS3142_5" }, { "dataset_id": "GDS3142", "description": "lung", "sample_id": [ "GSM252080", "GSM252081", "GSM252082" ], "type": "tissue", "id": "GDS3142_6" }, { "dataset_id": "GDS3142", "description": "kidney", "sample_id": [ "GSM252083", "GSM252084", "GSM252085" ], "type": "tissue", "id": "GDS3142_7" }, { "dataset_id": "GDS3142", "description": "adrenal gland", "sample_id": [ "GSM252086", "GSM252087", "GSM252088" ], "type": "tissue", "id": "GDS3142_8" }, { "dataset_id": "GDS3142", "description": "bone marrow", "sample_id": [ "GSM252089", "GSM252090", "GSM252091", "GSM252092" ], "type": "tissue", "id": "GDS3142_9" }, { "dataset_id": "GDS3142", "description": "adipose tissue", "sample_id": [ "GSM252093", "GSM252094", "GSM252095" ], "type": "tissue", "id": "GDS3142_10" }, { "dataset_id": "GDS3142", "description": "pituitary gland", "sample_id": [ "GSM252096", "GSM252097", "GSM252098", "GSM252099", "GSM252100" ], "type": "tissue", "id": "GDS3142_11" }, { "dataset_id": "GDS3142", "description": "salivary gland", "sample_id": [ "GSM252101", "GSM252102", "GSM252103" ], "type": "tissue", "id": "GDS3142_12" }, { "dataset_id": "GDS3142", "description": "seminal vesicle", "sample_id": [ "GSM252104", "GSM252105", "GSM252106" ], "type": "tissue", "id": "GDS3142_13" }, { "dataset_id": "GDS3142", "description": "thymus", "sample_id": [ "GSM252107", "GSM252108", "GSM252109" ], "type": "tissue", "id": "GDS3142_14" }, { "dataset_id": "GDS3142", "description": "testis", "sample_id": [ "GSM252110", "GSM252111", "GSM252112" ], "type": "tissue", "id": "GDS3142_15" }, { "dataset_id": "GDS3142", "description": "heart", "sample_id": [ "GSM252113", "GSM252114", "GSM252115" ], "type": "tissue", "id": "GDS3142_16" }, { "dataset_id": "GDS3142", "description": "small intestine", "sample_id": [ "GSM252116", "GSM252117", "GSM252118" ], "type": "tissue", "id": "GDS3142_17" }, { "dataset_id": "GDS3142", "description": "eye", "sample_id": [ "GSM252119", "GSM252120", "GSM252121" ], "type": "tissue", "id": "GDS3142_18" }, { "dataset_id": "GDS3142", "description": "embryonic stem cells", "sample_id": [ "GSM252122", "GSM252123", "GSM252124" ], "type": "tissue", "id": "GDS3142_19" }, { "dataset_id": "GDS3142", "description": "placenta", "sample_id": [ "GSM252125", "GSM252126", "GSM252127" ], "type": "tissue", "id": "GDS3142_20" }, { "dataset_id": "GDS3142", "description": "ovary", "sample_id": [ "GSM252128", "GSM252129", "GSM252130" ], "type": "tissue", "id": "GDS3142_21" }, { "dataset_id": "GDS3142", "description": "fetus", "sample_id": [ "GSM252131", "GSM252132", "GSM252133" ], "type": "tissue", "id": "GDS3142_22" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3142", "version": 1.0, "instances": "70", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3142.tab", "compression": "gz" } ], [ [ "GDS3143.tab" ], { "title": "Insectide chlorpyrifos effect on the brain: dose response", "description": "Analysis of brain frontal lobes of animals treated with chlorpyrifos (CPF) at doses up to 30 mg/kg. Subtoxic exposure to CPF, an organophosphorus insecticide, has long-term adverse effects on brain development. Results provide insight into the molecular mechanisms underlying these effects.", "type": "Expression profiling by array", "pubmed_id": "18668222", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE9751", "order": "none", "update_date": "Dec 30 2008", "subsets": [ { "dataset_id": "GDS3143", "description": "control", "sample_id": [ "GSM246129", "GSM246130", "GSM246131", "GSM246145", "GSM246146", "GSM246147", "GSM246148", "GSM246157", "GSM246158", "GSM246159" ], "type": "agent", "id": "GDS3143_1" }, { "dataset_id": "GDS3143", "description": "chlorpyrifos", "sample_id": [ "GSM246132", "GSM246133", "GSM246134", "GSM246135", "GSM246136", "GSM246137", "GSM246138", "GSM246139", "GSM246140", "GSM246141", "GSM246142", "GSM246143", "GSM246144", "GSM246149", "GSM246150", "GSM246151", "GSM246152", "GSM246154", "GSM246155", "GSM246156", "GSM246160", "GSM246161", "GSM246162", "GSM246163", "GSM246164", "GSM246165", "GSM246166", "GSM246167", "GSM246168", "GSM246169", "GSM246170", "GSM246171", "GSM246172", "GSM246173" ], "type": "agent", "id": "GDS3143_2" }, { "dataset_id": "GDS3143", "description": "0 mg/kg", "sample_id": [ "GSM246129", "GSM246130", "GSM246131", "GSM246145", "GSM246146", "GSM246147", "GSM246148", "GSM246157", "GSM246158", "GSM246159" ], "type": "dose", "id": "GDS3143_3" }, { "dataset_id": "GDS3143", "description": "0.5 mg/kg", "sample_id": [ "GSM246149", "GSM246150", "GSM246151", "GSM246152" ], "type": "dose", "id": "GDS3143_4" }, { "dataset_id": "GDS3143", "description": "1 mg/kg", "sample_id": [ "GSM246132", "GSM246133", "GSM246134", "GSM246135", "GSM246160", "GSM246161", "GSM246162", "GSM246163" ], "type": "dose", "id": "GDS3143_5" }, { "dataset_id": "GDS3143", "description": "5 mg/kg", "sample_id": [ "GSM246164", "GSM246165", "GSM246166", "GSM246167" ], "type": "dose", "id": "GDS3143_6" }, { "dataset_id": "GDS3143", "description": "10 mg/kg", "sample_id": [ "GSM246136", "GSM246137", "GSM246138", "GSM246139", "GSM246140", "GSM246168", "GSM246169", "GSM246170", "GSM246171" ], "type": "dose", "id": "GDS3143_7" }, { "dataset_id": "GDS3143", "description": "30 mg/kg", "sample_id": [ "GSM246154", "GSM246155", "GSM246156", "GSM246172", "GSM246173" ], "type": "dose", "id": "GDS3143_8" }, { "dataset_id": "GDS3143", "description": "50 mg/kg", "sample_id": [ "GSM246141", "GSM246142", "GSM246143", "GSM246144" ], "type": "dose", "id": "GDS3143_9" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3143", "version": 1.0, "instances": "44", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3143.tab", "compression": "gz" } ], [ [ "GDS3144.tab" ], { "title": "Inflamed vascular epithelial cells response to apple extract enriched for procyanidins", "description": "Analysis of inflamed vascular endothelial cells treated with an apple extract enriched for procyanidins of low molecular weight. Results provide insight into possible protective effects induced by the plant derived procyanidins on the endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "18979505", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9647", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS3144", "description": "uninflamed", "sample_id": [ "GSM243712", "GSM243713", "GSM243714", "GSM243715", "GSM243716", "GSM243717" ], "type": "stress", "id": "GDS3144_1" }, { "dataset_id": "GDS3144", "description": "inflamed", "sample_id": [ "GSM243718", "GSM243719", "GSM243720", "GSM243721", "GSM243722", "GSM243723" ], "type": "stress", "id": "GDS3144_2" }, { "dataset_id": "GDS3144", "description": "vehicle", "sample_id": [ "GSM243715", "GSM243716", "GSM243717", "GSM243721", "GSM243722", "GSM243723" ], "type": "agent", "id": "GDS3144_3" }, { "dataset_id": "GDS3144", "description": "procyanidin", "sample_id": [ "GSM243712", "GSM243713", "GSM243714", "GSM243718", "GSM243719", "GSM243720" ], "type": "agent", "id": "GDS3144_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3144", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3144.tab", "compression": "gz" } ], [ [ "GDS3145.tab" ], { "title": "Cerebral malaria model: time course", "description": "Analysis of brains of C57/B6 and Balb/C animals for up to 6 days following infection with Plasmodium berghei ANKA. Experimental infection of animals with P. berghei ANKA is a model for cerebral malaria (CM). C57/B6 animals are susceptible to cerebral malaria (CM), Balb/C animals are resistant.", "type": "Expression profiling by array", "pubmed_id": "17991715", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "count", "reference_series": "GSE7814", "order": "none", "update_date": "Dec 31 2008", "subsets": [ { "dataset_id": "GDS3145", "description": "C57/B6", "sample_id": [ "GSM189596", "GSM189597", "GSM189598", "GSM189599", "GSM189600", "GSM189601", "GSM189602", "GSM189603", "GSM189604", "GSM189605", "GSM189606", "GSM189607", "GSM189608", "GSM189609", "GSM189610", "GSM189611", "GSM189612", "GSM189613", "GSM189614", "GSM189615", "GSM189616", "GSM189617", "GSM189618", "GSM189619", "GSM189620", "GSM189621", "GSM189622", "GSM189623", "GSM189624", "GSM189625", "GSM189626", "GSM189627" ], "type": "strain", "id": "GDS3145_1" }, { "dataset_id": "GDS3145", "description": "Balb/C", "sample_id": [ "GSM189628", "GSM189629", "GSM189630", "GSM189631", "GSM189632", "GSM189633", "GSM189634", "GSM189635", "GSM189636", "GSM189637", "GSM189638", "GSM189639", "GSM189640", "GSM189641", "GSM189642", "GSM189643", "GSM189644", "GSM189645", "GSM189646", "GSM189647", "GSM189648", "GSM189649", "GSM189650", "GSM189651", "GSM189652", "GSM189653", "GSM189654", "GSM189655", "GSM189656", "GSM189657", "GSM189658", "GSM189659" ], "type": "strain", "id": "GDS3145_2" }, { "dataset_id": "GDS3145", "description": "uninfected", "sample_id": [ "GSM189596", "GSM189597", "GSM189598", "GSM189599", "GSM189600", "GSM189601", "GSM189602", "GSM189603", "GSM189628", "GSM189629", "GSM189630", "GSM189631", "GSM189632", "GSM189633", "GSM189634", "GSM189635" ], "type": "infection", "id": "GDS3145_3" }, { "dataset_id": "GDS3145", "description": "Plasmodium berghei ANKA", "sample_id": [ "GSM189604", "GSM189605", "GSM189606", "GSM189607", "GSM189608", "GSM189609", "GSM189610", "GSM189611", "GSM189636", "GSM189637", "GSM189638", "GSM189639", "GSM189640", "GSM189641", "GSM189642", "GSM189643", "GSM189612", "GSM189613", "GSM189614", "GSM189615", "GSM189616", "GSM189617", "GSM189618", "GSM189619", "GSM189644", "GSM189645", "GSM189646", "GSM189647", "GSM189648", "GSM189649", "GSM189650", "GSM189651", "GSM189620", "GSM189621", "GSM189622", "GSM189623", "GSM189624", "GSM189625", "GSM189626", "GSM189627", "GSM189652", "GSM189653", "GSM189654", "GSM189655", "GSM189656", "GSM189657", "GSM189658", "GSM189659" ], "type": "infection", "id": "GDS3145_4" }, { "dataset_id": "GDS3145", "description": "0 d", "sample_id": [ "GSM189596", "GSM189597", "GSM189598", "GSM189599", "GSM189600", "GSM189601", "GSM189602", "GSM189603", "GSM189628", "GSM189629", "GSM189630", "GSM189631", "GSM189632", "GSM189633", "GSM189634", "GSM189635" ], "type": "time", "id": "GDS3145_5" }, { "dataset_id": "GDS3145", "description": "1 d", "sample_id": [ "GSM189604", "GSM189605", "GSM189606", "GSM189607", "GSM189608", "GSM189609", "GSM189610", "GSM189611", "GSM189636", "GSM189637", "GSM189638", "GSM189639", "GSM189640", "GSM189641", "GSM189642", "GSM189643" ], "type": "time", "id": "GDS3145_6" }, { "dataset_id": "GDS3145", "description": "3 d", "sample_id": [ "GSM189612", "GSM189613", "GSM189614", "GSM189615", "GSM189616", "GSM189617", "GSM189618", "GSM189619", "GSM189644", "GSM189645", "GSM189646", "GSM189647", "GSM189648", "GSM189649", "GSM189650", "GSM189651" ], "type": "time", "id": "GDS3145_7" }, { "dataset_id": "GDS3145", "description": "6 d", "sample_id": [ "GSM189620", "GSM189621", "GSM189622", "GSM189623", "GSM189624", "GSM189625", "GSM189626", "GSM189627", "GSM189652", "GSM189653", "GSM189654", "GSM189655", "GSM189656", "GSM189657", "GSM189658", "GSM189659" ], "type": "time", "id": "GDS3145_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3145", "version": 1.0, "instances": "64", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3145.tab", "compression": "gz" } ], [ [ "GDS3147.tab" ], { "title": "GL7 determinant in various B-cell lines", "description": "Analysis of B-cell lines representing myeloma and Burkitt's lymphoma and exhibiting varied GL7 epitope expression. GL7high B-cells have higher functional activity for producing antibodies and presenting antigens. Results identify a candidate gene responsible for the biosynthesis of the GL7 epitope.", "type": "Expression profiling by array", "pubmed_id": "17296732", "platform": "GPL3465", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "1152", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE4407", "order": "none", "update_date": "Jan 18 2008", "subsets": [ { "dataset_id": "GDS3147", "description": "myeloma", "sample_id": [ "GSM99382", "GSM99383" ], "type": "cell line", "id": "GDS3147_1" }, { "dataset_id": "GDS3147", "description": "Burkitt's lymphoma", "sample_id": [ "GSM99381", "GSM99385", "GSM99387", "GSM99388" ], "type": "cell line", "id": "GDS3147_2" } ], "taxid": "9606", "genes": 926, "aggregation_function": "mean", "name": "GDS3147", "version": 1.0, "instances": "6", "variables": 928, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3147.tab", "compression": "gz" } ], [ [ "GDS3148.tab" ], { "title": "Hepatocyte growth factor effect on Met receptor-knockout primary hepatocytes: time course", "description": "Analysis of Met-deficient hepatocytes treated with HGF for up to 24 hours. HGF/Met signaling controls invasive growth and metastasis in a variety of cancers, including hepatocellular carcinoma. Results identify a Met-dependent gene expression signature that may help elucidate the oncogenic process.", "type": "Expression profiling by array", "pubmed_id": "16710476", "platform": "GPL1536", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22272", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "60", "value_type": "log2 ratio", "reference_series": "GSE4451", "order": "none", "update_date": "Jan 18 2008", "subsets": [ { "dataset_id": "GDS3148", "description": "Met knockout mutant", "sample_id": [ "GSM100050", "GSM100051", "GSM100052", "GSM100053", "GSM100059", "GSM100060", "GSM100065", "GSM100066", "GSM100067", "GSM100068", "GSM100075", "GSM100076", "GSM100077", "GSM100078", "GSM100079", "GSM100080", "GSM100084", "GSM100085", "GSM100086", "GSM100087", "GSM100088", "GSM100089", "GSM100090", "GSM100091", "GSM100092", "GSM100093", "GSM100106", "GSM100107", "GSM100108", "GSM100109" ], "type": "genotype/variation", "id": "GDS3148_1" }, { "dataset_id": "GDS3148", "description": "wildtype", "sample_id": [ "GSM100054", "GSM100055", "GSM100056", "GSM100057", "GSM100058", "GSM100061", "GSM100062", "GSM100063", "GSM100064", "GSM100069", "GSM100070", "GSM100071", "GSM100072", "GSM100073", "GSM100074", "GSM100081", "GSM100082", "GSM100083", "GSM100094", "GSM100095", "GSM100096", "GSM100097", "GSM100098", "GSM100099", "GSM100100", "GSM100101", "GSM100102", "GSM100103", "GSM100104", "GSM100105" ], "type": "genotype/variation", "id": "GDS3148_2" }, { "dataset_id": "GDS3148", "description": "control", "sample_id": [ "GSM100050", "GSM100052", "GSM100065", "GSM100066", "GSM100067", "GSM100068", "GSM100054", "GSM100055", "GSM100061", "GSM100062", "GSM100063", "GSM100064" ], "type": "agent", "id": "GDS3148_3" }, { "dataset_id": "GDS3148", "description": "hepatocyte growth factor", "sample_id": [ "GSM100051", "GSM100053", "GSM100059", "GSM100060", "GSM100075", "GSM100076", "GSM100077", "GSM100078", "GSM100079", "GSM100080", "GSM100084", "GSM100085", "GSM100086", "GSM100087", "GSM100088", "GSM100089", "GSM100090", "GSM100091", "GSM100092", "GSM100093", "GSM100106", "GSM100107", "GSM100108", "GSM100109", "GSM100056", "GSM100057", "GSM100058", "GSM100069", "GSM100070", "GSM100071", "GSM100072", "GSM100073", "GSM100074", "GSM100081", "GSM100082", "GSM100083", "GSM100094", "GSM100095", "GSM100096", "GSM100097", "GSM100098", "GSM100099", "GSM100100", "GSM100101", "GSM100102", "GSM100103", "GSM100104", "GSM100105" ], "type": "agent", "id": "GDS3148_4" }, { "dataset_id": "GDS3148", "description": "0 hr", "sample_id": [ "GSM100050", "GSM100052", "GSM100065", "GSM100066", "GSM100067", "GSM100068", "GSM100054", "GSM100055", "GSM100061", "GSM100062", "GSM100063", "GSM100064" ], "type": "time", "id": "GDS3148_5" }, { "dataset_id": "GDS3148", "description": "0.5 hr", "sample_id": [ "GSM100088", "GSM100089", "GSM100090", "GSM100091", "GSM100092", "GSM100093", "GSM100094", "GSM100095", "GSM100096", "GSM100097", "GSM100098", "GSM100099" ], "type": "time", "id": "GDS3148_6" }, { "dataset_id": "GDS3148", "description": "2 hr", "sample_id": [ "GSM100051", "GSM100053", "GSM100106", "GSM100107", "GSM100108", "GSM100109", "GSM100100", "GSM100101", "GSM100102", "GSM100103", "GSM100104", "GSM100105" ], "type": "time", "id": "GDS3148_7" }, { "dataset_id": "GDS3148", "description": "12 hr", "sample_id": [ "GSM100075", "GSM100076", "GSM100077", "GSM100078", "GSM100079", "GSM100080", "GSM100069", "GSM100070", "GSM100071", "GSM100072", "GSM100073", "GSM100074" ], "type": "time", "id": "GDS3148_8" }, { "dataset_id": "GDS3148", "description": "24 hr", "sample_id": [ "GSM100059", "GSM100060", "GSM100084", "GSM100085", "GSM100086", "GSM100087", "GSM100056", "GSM100057", "GSM100058", "GSM100081", "GSM100082", "GSM100083" ], "type": "time", "id": "GDS3148_9" } ], "taxid": "10090", "genes": 19579, "aggregation_function": "mean", "name": "GDS3148", "version": 1.0, "instances": "60", "variables": 19583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3148.tab", "compression": "gz" } ], [ [ "GDS3149.tab" ], { "title": "Suppressor of cytokine signaling 3 deficiency effect on the regenerating liver", "description": "Analysis of regenerating livers of animals bearing a hepatocyte-specific Suppressor of cytokine signaling 3 gene (SOCS3) knockout. SOCS3 down-regulates several signaling pathways in multiple cell types. Results provide insight into the role of SOCS3 in liver regeneration.", "type": "Expression profiling by array", "pubmed_id": "18158318", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE9549", "order": "none", "update_date": "Jan 23 2008", "subsets": [ { "dataset_id": "GDS3149", "description": "control", "sample_id": [ "GSM241738", "GSM241740", "GSM241742" ], "type": "genotype/variation", "id": "GDS3149_1" }, { "dataset_id": "GDS3149", "description": "Socs3 null", "sample_id": [ "GSM241739", "GSM241741", "GSM241743" ], "type": "genotype/variation", "id": "GDS3149_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3149", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3149.tab", "compression": "gz" } ], [ [ "GDS315.tab" ], { "title": "Ligand screen in B cells: platelet activating factor", "description": "Temporal analysis of effects induced by 100 nM platelet activating factor in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE394", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS315", "description": "30 minute", "sample_id": [ "GSM5720", "GSM5721", "GSM5722" ], "type": "time", "id": "GDS315_1" }, { "dataset_id": "GDS315", "description": "60 minute", "sample_id": [ "GSM5723", "GSM5724", "GSM5725" ], "type": "time", "id": "GDS315_2" }, { "dataset_id": "GDS315", "description": "120 minute", "sample_id": [ "GSM5726", "GSM5727" ], "type": "time", "id": "GDS315_3" }, { "dataset_id": "GDS315", "description": "240 minute", "sample_id": [ "GSM5728", "GSM5729", "GSM5730" ], "type": "time", "id": "GDS315_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS315", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS315.tab", "compression": "gz" } ], [ [ "GDS3150.tab" ], { "title": "Renal inner medullary collecting duct cells", "description": "Analysis of inner medullary collecting duct (IMCD) cells isolated from the renal inner medulla. The IMCD is the terminal portion of the kidney's collecting duct system. Results provide insight into molecular mechanisms underlying aquaporin-2 regulation and osmotic water permeability in the IMCD.", "type": "Expression profiling by array", "pubmed_id": "17956998", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7891", "order": "none", "update_date": "Dec 31 2008", "subsets": [ { "dataset_id": "GDS3150", "description": "control", "sample_id": [ "GSM190852", "GSM190853", "GSM190854" ], "type": "cell type", "id": "GDS3150_1" }, { "dataset_id": "GDS3150", "description": "inner medullary collecting duct cell", "sample_id": [ "GSM190849", "GSM190850", "GSM190851" ], "type": "cell type", "id": "GDS3150_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3150", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3150.tab", "compression": "gz" } ], [ [ "GDS3151.tab" ], { "title": "Beta-galactoside alpha-2,6-sialyltransferase deficient mammary tumors", "description": "Analysis of mammary tumors from animals lacking beta-galactoside alpha-2,6-sialyltransferase (ST6Gal-I). Increased ST6Gal-I expression is reported in several carcinomas including breast carcinoma. Results provide insight into the role of ST6Gal-I in tumor progression.", "type": "Expression profiling by array", "pubmed_id": "18199532", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9447", "order": "none", "update_date": "Jan 23 2008", "subsets": [ { "dataset_id": "GDS3151", "description": "control", "sample_id": [ "GSM239970", "GSM239972" ], "type": "genotype/variation", "id": "GDS3151_1" }, { "dataset_id": "GDS3151", "description": "beta-galactoside alpha-2,6-sialyltransferase null", "sample_id": [ "GSM239969", "GSM239971" ], "type": "genotype/variation", "id": "GDS3151_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3151", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3151.tab", "compression": "gz" } ], [ [ "GDS3153.tab" ], { "title": "Diabetes model: heart", "description": "Analysis of heart left ventricles of diabetic animals. Diabetes induced by streptozotocin treatment. Results provide insight into the molecular mechanisms underlying diabetes-induced cardiac dysfunction.", "type": "Expression profiling by array", "pubmed_id": "17566115", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6880", "order": "none", "update_date": "Jan 28 2008", "subsets": [ { "dataset_id": "GDS3153", "description": "normal", "sample_id": [ "GSM158589", "GSM158590", "GSM158591" ], "type": "disease state", "id": "GDS3153_1" }, { "dataset_id": "GDS3153", "description": "diabetes", "sample_id": [ "GSM158593", "GSM158594", "GSM158595" ], "type": "disease state", "id": "GDS3153_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3153", "version": 1.0, "instances": "6", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3153.tab", "compression": "gz" } ], [ [ "GDS3155.tab" ], { "title": "Dasatinib resistant and sensitive prostatic cancer cell lines", "description": "Analysis of 16 prostatic cancer cell lines treated with anti-tumor agent dasatinib. The cell lines display sensitivity or resistance to dasatinib. Results used to define a gene expression profile associated with sensitivity to dasatinib.", "type": "Expression profiling by array", "pubmed_id": "18047674", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE9633", "order": "none", "update_date": "Jan 02 2009", "subsets": [ { "dataset_id": "GDS3155", "description": "PC3", "sample_id": [ "GSM243480" ], "type": "cell line", "id": "GDS3155_1" }, { "dataset_id": "GDS3155", "description": "DU145", "sample_id": [ "GSM243481" ], "type": "cell line", "id": "GDS3155_2" }, { "dataset_id": "GDS3155", "description": "LNCaP", "sample_id": [ "GSM243482" ], "type": "cell line", "id": "GDS3155_3" }, { "dataset_id": "GDS3155", "description": "22Rv", "sample_id": [ "GSM243483" ], "type": "cell line", "id": "GDS3155_4" }, { "dataset_id": "GDS3155", "description": "WPMY1", "sample_id": [ "GSM243484" ], "type": "cell line", "id": "GDS3155_5" }, { "dataset_id": "GDS3155", "description": "VCaP", "sample_id": [ "GSM243485" ], "type": "cell line", "id": "GDS3155_6" }, { "dataset_id": "GDS3155", "description": "MDAPCa2b", "sample_id": [ "GSM243486" ], "type": "cell line", "id": "GDS3155_7" }, { "dataset_id": "GDS3155", "description": "HPV7", "sample_id": [ "GSM243487" ], "type": "cell line", "id": "GDS3155_8" }, { "dataset_id": "GDS3155", "description": "HPV10", "sample_id": [ "GSM243488" ], "type": "cell line", "id": "GDS3155_9" }, { "dataset_id": "GDS3155", "description": "RWPE1", "sample_id": [ "GSM243489" ], "type": "cell line", "id": "GDS3155_10" }, { "dataset_id": "GDS3155", "description": "RWPE2", "sample_id": [ "GSM243490" ], "type": "cell line", "id": "GDS3155_11" }, { "dataset_id": "GDS3155", "description": "NB11", "sample_id": [ "GSM243491" ], "type": "cell line", "id": "GDS3155_12" }, { "dataset_id": "GDS3155", "description": "W99", "sample_id": [ "GSM243492" ], "type": "cell line", "id": "GDS3155_13" }, { "dataset_id": "GDS3155", "description": "PWR1E", "sample_id": [ "GSM243493" ], "type": "cell line", "id": "GDS3155_14" }, { "dataset_id": "GDS3155", "description": "DUCaP", "sample_id": [ "GSM243494" ], "type": "cell line", "id": "GDS3155_15" }, { "dataset_id": "GDS3155", "description": "NB26", "sample_id": [ "GSM243495" ], "type": "cell line", "id": "GDS3155_16" }, { "dataset_id": "GDS3155", "description": "dasatinib sensitive", "sample_id": [ "GSM243480", "GSM243481", "GSM243482", "GSM243487", "GSM243488", "GSM243489", "GSM243490", "GSM243491", "GSM243492", "GSM243493", "GSM243495" ], "type": "other", "id": "GDS3155_17" }, { "dataset_id": "GDS3155", "description": "dasatinib resistant", "sample_id": [ "GSM243483", "GSM243484", "GSM243485", "GSM243486", "GSM243494" ], "type": "other", "id": "GDS3155_18" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3155", "version": 1.0, "instances": "16", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3155.tab", "compression": "gz" } ], [ [ "GDS3156.tab" ], { "title": "Inherited cryptorchidism model: fetal gubernaculum", "description": "Analysis of gubernaculum of cryptorchid (orl) fetuses at various gestational days up to GD20. The orl strain is at high risk for cryptorchidism, or undescended testis, one of the most common congenital anomalies in humans. Results provide insight into molecular mechanisms underlying cryptorchidism.", "type": "Expression profiling by array", "pubmed_id": "18222913", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE7755", "order": "none", "update_date": "Feb 04 2008", "subsets": [ { "dataset_id": "GDS3156", "description": "wild type", "sample_id": [ "GSM187635", "GSM187636", "GSM187637", "GSM187638", "GSM187639", "GSM187640", "GSM187641", "GSM187642", "GSM187643", "GSM187644", "GSM187645", "GSM187646", "GSM187647", "GSM187648", "GSM187649", "GSM187650", "GSM187651", "GSM187652", "GSM187653" ], "type": "strain", "id": "GDS3156_1" }, { "dataset_id": "GDS3156", "description": "orl", "sample_id": [ "GSM187654", "GSM187655", "GSM187656", "GSM187657", "GSM187658", "GSM187659", "GSM187660", "GSM187661", "GSM187662", "GSM187663", "GSM187664", "GSM187665", "GSM187666", "GSM187667", "GSM187668" ], "type": "strain", "id": "GDS3156_2" }, { "dataset_id": "GDS3156", "description": "female", "sample_id": [ "GSM187635", "GSM187636", "GSM187637", "GSM187638" ], "type": "gender", "id": "GDS3156_3" }, { "dataset_id": "GDS3156", "description": "male", "sample_id": [ "GSM187639", "GSM187640", "GSM187641", "GSM187642", "GSM187643", "GSM187644", "GSM187645", "GSM187646", "GSM187647", "GSM187648", "GSM187649", "GSM187650", "GSM187651", "GSM187652", "GSM187653", "GSM187654", "GSM187655", "GSM187656", "GSM187657", "GSM187658", "GSM187659", "GSM187660", "GSM187661", "GSM187662", "GSM187663", "GSM187664", "GSM187665", "GSM187666", "GSM187667", "GSM187668" ], "type": "gender", "id": "GDS3156_4" }, { "dataset_id": "GDS3156", "description": "gestational day 18", "sample_id": [ "GSM187635", "GSM187636", "GSM187637", "GSM187638", "GSM187639", "GSM187640", "GSM187641", "GSM187642", "GSM187654", "GSM187655", "GSM187656", "GSM187657" ], "type": "age", "id": "GDS3156_5" }, { "dataset_id": "GDS3156", "description": "gestational day 19", "sample_id": [ "GSM187643", "GSM187644", "GSM187645", "GSM187646", "GSM187658", "GSM187659", "GSM187660", "GSM187661" ], "type": "age", "id": "GDS3156_6" }, { "dataset_id": "GDS3156", "description": "gestational day 20", "sample_id": [ "GSM187647", "GSM187648", "GSM187649", "GSM187650", "GSM187651", "GSM187652", "GSM187653", "GSM187662", "GSM187663", "GSM187664", "GSM187665", "GSM187666", "GSM187667", "GSM187668" ], "type": "age", "id": "GDS3156_7" }, { "dataset_id": "GDS3156", "description": "left and right side", "sample_id": [ "GSM187635", "GSM187636", "GSM187637", "GSM187638" ], "type": "other", "id": "GDS3156_8" }, { "dataset_id": "GDS3156", "description": "left side", "sample_id": [ "GSM187639", "GSM187640", "GSM187641", "GSM187642", "GSM187654", "GSM187655", "GSM187656", "GSM187657", "GSM187643", "GSM187644", "GSM187645", "GSM187646", "GSM187658", "GSM187659", "GSM187660", "GSM187661", "GSM187647", "GSM187648", "GSM187649", "GSM187650", "GSM187662", "GSM187663", "GSM187664", "GSM187665" ], "type": "other", "id": "GDS3156_9" }, { "dataset_id": "GDS3156", "description": "right side", "sample_id": [ "GSM187651", "GSM187652", "GSM187653", "GSM187666", "GSM187667", "GSM187668" ], "type": "other", "id": "GDS3156_10" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3156", "version": 1.0, "instances": "34", "variables": 13380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3156.tab", "compression": "gz" } ], [ [ "GDS3157.tab" ], { "title": "Inherited cryptorchidism model: fetal testis", "description": "Analysis of testis of cryptorchid (orl) fetuses at at various gestational days up to GD19. The orl strain is at high risk for cryptorchidism, or undescended testis, one of the most common congenital anomalies in humans. Results provide insight into molecular mechanisms underlying cryptorchidism.", "type": "Expression profiling by array", "pubmed_id": "18222913", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE7755", "order": "none", "update_date": "Feb 04 2008", "subsets": [ { "dataset_id": "GDS3157", "description": "wild type", "sample_id": [ "GSM187669", "GSM187670", "GSM187671", "GSM187672", "GSM187673", "GSM187674", "GSM187675", "GSM187676", "GSM187677", "GSM187678" ], "type": "strain", "id": "GDS3157_1" }, { "dataset_id": "GDS3157", "description": "orl", "sample_id": [ "GSM187679", "GSM187680", "GSM187681", "GSM187682", "GSM187683", "GSM187684", "GSM187685", "GSM187686", "GSM187687", "GSM187688" ], "type": "strain", "id": "GDS3157_2" }, { "dataset_id": "GDS3157", "description": "gestational day 17", "sample_id": [ "GSM187679", "GSM187680", "GSM187681", "GSM187682", "GSM187683", "GSM187669", "GSM187670", "GSM187671", "GSM187672", "GSM187673" ], "type": "age", "id": "GDS3157_3" }, { "dataset_id": "GDS3157", "description": "gestational day 19", "sample_id": [ "GSM187684", "GSM187685", "GSM187686", "GSM187687", "GSM187688", "GSM187674", "GSM187675", "GSM187676", "GSM187677", "GSM187678" ], "type": "age", "id": "GDS3157_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3157", "version": 1.0, "instances": "20", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3157.tab", "compression": "gz" } ], [ [ "GDS3158.tab" ], { "title": "Rheumatoid arthritis-related cartilage destruction model: chondrocytes", "description": "Analysis of chondrocytes treated with a supernatant from SV40 T-antigen immortalized human synovial fibroblasts derived from a patient with rheumatoid arthritis (RA). Results provide insight into the molecular mechanism underlying RA-related cartilage destruction.", "type": "Expression profiling by array", "pubmed_id": "18205922", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10024", "order": "none", "update_date": "Feb 04 2008", "subsets": [ { "dataset_id": "GDS3158", "description": "untreated", "sample_id": [ "GSM253287", "GSM253288" ], "type": "agent", "id": "GDS3158_1" }, { "dataset_id": "GDS3158", "description": "normal supernatant", "sample_id": [ "GSM253285", "GSM253286" ], "type": "agent", "id": "GDS3158_2" }, { "dataset_id": "GDS3158", "description": "rheumatoid arthritis supernatant", "sample_id": [ "GSM253283", "GSM253284" ], "type": "agent", "id": "GDS3158_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3158", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3158.tab", "compression": "gz" } ], [ [ "GDS3159.tab" ], { "title": "Reversine effect on myoblast cell line", "description": "Analysis of C2C12 myoblast cells treated with reversine. Reversine induces dedifferentiation of C2C12 myoblasts and the subsequent redifferentiation to become multipotent mesenchymal progenitor cells. Results provide insight into the molecular mechanisms underlying reversine's effects.", "type": "Expression profiling by array", "pubmed_id": "19015271", "platform": "GPL2995", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33012", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9754", "order": "none", "update_date": "Jan 02 2009", "subsets": [ { "dataset_id": "GDS3159", "description": "control", "sample_id": [ "GSM246240", "GSM246241" ], "type": "agent", "id": "GDS3159_1" }, { "dataset_id": "GDS3159", "description": "reversine", "sample_id": [ "GSM246242", "GSM246243" ], "type": "agent", "id": "GDS3159_2" } ], "taxid": "10090", "genes": 32220, "aggregation_function": "mean", "name": "GDS3159", "version": 1.0, "instances": "4", "variables": 32222, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3159.tab", "compression": "gz" } ], [ [ "GDS316.tab" ], { "title": "Ligand screen in B cells: prostaglandin E2", "description": "Temporal analysis of effects induced by 10 uM prostaglandin E2 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE395", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS316", "description": "30 minute", "sample_id": [ "GSM5731", "GSM5732", "GSM5733" ], "type": "time", "id": "GDS316_1" }, { "dataset_id": "GDS316", "description": "60 minute", "sample_id": [ "GSM5734", "GSM5735", "GSM5736" ], "type": "time", "id": "GDS316_2" }, { "dataset_id": "GDS316", "description": "120 minute", "sample_id": [ "GSM5737", "GSM5738", "GSM5739" ], "type": "time", "id": "GDS316_3" }, { "dataset_id": "GDS316", "description": "240 minute", "sample_id": [ "GSM5740", "GSM5741", "GSM5742" ], "type": "time", "id": "GDS316_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS316", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS316.tab", "compression": "gz" } ], [ [ "GDS3160.tab" ], { "title": "Methotrexate resistant colon cancer cell line", "description": "Analysis of HT29 derived colon cancer cells resistant to the anticancer drug methotrexate (MTX). Results provide insight into the molecular mechanisms contributing to MTX resistance.", "type": "Expression profiling by array", "pubmed_id": "17945194", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9412", "order": "none", "update_date": "Feb 05 2008", "subsets": [ { "dataset_id": "GDS3160", "description": "sensitive", "sample_id": [ "GSM239309", "GSM239310", "GSM239311" ], "type": "cell line", "id": "GDS3160_1" }, { "dataset_id": "GDS3160", "description": "resistant", "sample_id": [ "GSM239312", "GSM239313", "GSM239314" ], "type": "cell line", "id": "GDS3160_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3160", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3160.tab", "compression": "gz" } ], [ [ "GDS3162.tab" ], { "title": "Cochlea response to mitochondrial DNA mutations", "description": "Analysis of cochleas of animals carrying a mutator allele of the mitochondrial (mt) Polg DNA polymerase. Accumulation of mtDNA mutations is associated with age-related hearing loss. Results provide insight into the role of mtDNA mutations in the pathogenesis of age-related hearing loss.", "type": "Expression profiling by array", "pubmed_id": "17363114", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE4866", "order": "none", "update_date": "Mar 07 2008", "subsets": [ { "dataset_id": "GDS3162", "description": "wild type", "sample_id": [ "GSM109462", "GSM109463", "GSM109464", "GSM109465", "GSM109466" ], "type": "genotype/variation", "id": "GDS3162_1" }, { "dataset_id": "GDS3162", "description": "Polg D257A mutant", "sample_id": [ "GSM109467", "GSM109468", "GSM109470", "GSM109471", "GSM109472" ], "type": "genotype/variation", "id": "GDS3162_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3162", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3162.tab", "compression": "gz" } ], [ [ "GDS317.tab" ], { "title": "Ligand screen in B cells: sphingosine-1-phosphate", "description": "Temporal analysis of effects induced by 0.3 uM sphingosine-1-phosphate in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE396", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS317", "description": "30 minute", "sample_id": [ "GSM5743", "GSM5744", "GSM5745" ], "type": "time", "id": "GDS317_1" }, { "dataset_id": "GDS317", "description": "60 minute", "sample_id": [ "GSM5746", "GSM5747", "GSM5748" ], "type": "time", "id": "GDS317_2" }, { "dataset_id": "GDS317", "description": "120 minute", "sample_id": [ "GSM5749", "GSM5750", "GSM5751" ], "type": "time", "id": "GDS317_3" }, { "dataset_id": "GDS317", "description": "240 minute", "sample_id": [ "GSM5752", "GSM5753", "GSM5754" ], "type": "time", "id": "GDS317_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS317", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS317.tab", "compression": "gz" } ], [ [ "GDS3171.tab" ], { "title": "Transcription factor AP-2 gamma mutation effect on the embryonic skin", "description": "Analysis of back skin from embryonic day 16.5 animals bearing a mutation in transcription factor AP-2 gamma. The E16.5 AP-2 gamma mutants display abnormal epidermal stratification. Results provide insight into the role of AP-2 gamma in skin development.", "type": "Expression profiling by array", "pubmed_id": "18353300", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10175", "order": "none", "update_date": "Aug 20 2008", "subsets": [ { "dataset_id": "GDS3171", "description": "control", "sample_id": [ "GSM257174", "GSM257175", "GSM257176" ], "type": "genotype/variation", "id": "GDS3171_1" }, { "dataset_id": "GDS3171", "description": "AP-2 gamma mutation", "sample_id": [ "GSM257171", "GSM257172", "GSM257173" ], "type": "genotype/variation", "id": "GDS3171_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3171", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3171.tab", "compression": "gz" } ], [ [ "GDS3172.tab" ], { "title": "Treacher Collins Syndrome gene heterozygous mutation effect on embryos", "description": "Analysis of embryos heterozygous mutant for the Treacher Collins Syndrome (TCS) gene (TCOF1). TCS is a congenital disorder of craniofacial development arising from mutations in TCOF1. Results provide insight into the molecular pathogenesis of TCS.", "type": "Expression profiling by array", "pubmed_id": "18246078", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10167", "order": "none", "update_date": "Feb 11 2008", "subsets": [ { "dataset_id": "GDS3172", "description": "widl type", "sample_id": [ "GSM257052", "GSM257054", "GSM257056" ], "type": "genotype/variation", "id": "GDS3172_1" }, { "dataset_id": "GDS3172", "description": "TCOF1 mutant", "sample_id": [ "GSM257053", "GSM257055", "GSM257057" ], "type": "genotype/variation", "id": "GDS3172_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3172", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3172.tab", "compression": "gz" } ], [ [ "GDS3173.tab" ], { "title": "Homeodomain transcription factor EMX2 deficiency effect on the embryonic urogenital epithelium", "description": "Analysis of urogenital epithelia from embryonic day 10.5 animals lacking the homeodomain transcription factor EMX2. Emx2 null mutants show severe urogenital malformations and die soon after birth due to the absence of kidneys. Results provide insight into the role of EMX2 in urogenital development.", "type": "Expression profiling by array", "pubmed_id": "20962046", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10216", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3173", "description": "wild type", "sample_id": [ "GSM257875", "GSM257932", "GSM257933" ], "type": "genotype/variation", "id": "GDS3173_1" }, { "dataset_id": "GDS3173", "description": "EMX2 null", "sample_id": [ "GSM257934", "GSM257935", "GSM257936" ], "type": "genotype/variation", "id": "GDS3173_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3173", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3173.tab", "compression": "gz" } ], [ [ "GDS3175.tab" ], { "title": "NF-kappaB and phosphotidylinositol 3-kinase inhibitor treated monocytes infected with the human cytomegalovirus", "description": "Analysis of monocytes treated with an NF-kappaB or a phosphatidylinositol 3-kinase (PI3K) inhibitor and then infected with the human cytomegalovirus (HCMV). Results provide insight into the role of NF-kappaB and PI3K in the activation of monocytes to a proinflammatory state after an HCMV infection.", "type": "Expression profiling by array", "pubmed_id": "18003728", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9601", "order": "none", "update_date": "Feb 11 2008", "subsets": [ { "dataset_id": "GDS3175", "description": "control", "sample_id": [ "GSM242894", "GSM242895", "GSM242896", "GSM242897", "GSM242898", "GSM242899" ], "type": "agent", "id": "GDS3175_1" }, { "dataset_id": "GDS3175", "description": "NF-kappaB inhibitor", "sample_id": [ "GSM242900", "GSM242901", "GSM242902" ], "type": "agent", "id": "GDS3175_2" }, { "dataset_id": "GDS3175", "description": "PI3K inhibitor", "sample_id": [ "GSM242903", "GSM242904", "GSM242905" ], "type": "agent", "id": "GDS3175_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3175", "version": 1.0, "instances": "12", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3175.tab", "compression": "gz" } ], [ [ "GDS3176.tab" ], { "title": "pRb p107 double deficient skin", "description": "Analysis of skin grafts lacking pRb, p107, or both genes. pRb and p107 belong to the retinoblastoma family important in cell cycle regulation. Results provide insight into the role of p107 in epidermal tumor development when pRb is absent.", "type": "Expression profiling by array", "pubmed_id": "17932945", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE9567", "order": "none", "update_date": "Feb 12 2008", "subsets": [ { "dataset_id": "GDS3176", "description": "wild type", "sample_id": [ "GSM241881", "GSM241882" ], "type": "genotype/variation", "id": "GDS3176_1" }, { "dataset_id": "GDS3176", "description": "pRb null", "sample_id": [ "GSM241883", "GSM241885" ], "type": "genotype/variation", "id": "GDS3176_2" }, { "dataset_id": "GDS3176", "description": "p107 null", "sample_id": [ "GSM241886", "GSM241887" ], "type": "genotype/variation", "id": "GDS3176_3" }, { "dataset_id": "GDS3176", "description": "pRb p107 double null", "sample_id": [ "GSM241888", "GSM241927" ], "type": "genotype/variation", "id": "GDS3176_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3176", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3176.tab", "compression": "gz" } ], [ [ "GDS3177.tab" ], { "title": "Confluent and sub-confluent umbilical vein endothelial cell cultures", "description": "Analysis of umbilical vein endothelial cells grown to sub-confluency or confluency. Results provide insight into the molecular mechanisms underlying endothelial barrier formation.", "type": "Expression profiling by array", "pubmed_id": "18065521", "platform": "GPL4868", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "18659", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log10 ratio", "reference_series": "GSE9334", "order": "none", "update_date": "Feb 12 2008", "subsets": [ { "dataset_id": "GDS3177", "description": "sub-confluent", "sample_id": [ "GSM237706", "GSM237707", "GSM237708" ], "type": "growth protocol", "id": "GDS3177_1" }, { "dataset_id": "GDS3177", "description": "confluent", "sample_id": [ "GSM237710", "GSM237711", "GSM237712" ], "type": "growth protocol", "id": "GDS3177_2" } ], "taxid": "9606", "genes": 17115, "aggregation_function": "mean", "name": "GDS3177", "version": 1.0, "instances": "6", "variables": 17117, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3177.tab", "compression": "gz" } ], [ [ "GDS3178.tab" ], { "title": "Transcription factor Ctip2 deficiency effect on brain striata", "description": "Analysis of brain striata from neonates lacking the transcription factor Ctip2. Ctip2 is expressed by striatal medium spiny neurons (MSN), which are critical in motor control and selectively lost in Huntington's disease. Results provide insight into the role of Ctip2 in MSN differentiation.", "type": "Expression profiling by array", "pubmed_id": "18199763", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE9330", "order": "none", "update_date": "Aug 21 2008", "subsets": [ { "dataset_id": "GDS3178", "description": "wild type", "sample_id": [ "GSM237615", "GSM237616", "GSM237617" ], "type": "genotype/variation", "id": "GDS3178_1" }, { "dataset_id": "GDS3178", "description": "Ctip2 heterozygous mutant", "sample_id": [ "GSM237618" ], "type": "genotype/variation", "id": "GDS3178_2" }, { "dataset_id": "GDS3178", "description": "Ctip2 homozygous null mutant", "sample_id": [ "GSM237619", "GSM237620", "GSM237621", "GSM237622" ], "type": "genotype/variation", "id": "GDS3178_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3178", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3178.tab", "compression": "gz" } ], [ [ "GDS3179.tab" ], { "title": "Lung metastatic breast cancer cell line response to metadherin depletion", "description": "Analysis of LM2 breast cancer cells depleted for metadherin (MTDH), a cell surface protein in breast tumors that mediates lung metastasis. LM2 cells were grown alone or on a monolayer of lung microvascular endothelial cells. Results provide insight into molecular mechanisms underlying MTDH action.", "type": "Expression profiling by array", "pubmed_id": "19111877", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE9187", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3179", "description": "control", "sample_id": [ "GSM232034", "GSM232035", "GSM232036", "GSM232040", "GSM232041", "GSM232042" ], "type": "protocol", "id": "GDS3179_1" }, { "dataset_id": "GDS3179", "description": "metadherin depletion", "sample_id": [ "GSM232037", "GSM232038", "GSM232039", "GSM232043", "GSM232044", "GSM232045" ], "type": "protocol", "id": "GDS3179_2" }, { "dataset_id": "GDS3179", "description": "culured alone", "sample_id": [ "GSM232034", "GSM232035", "GSM232036", "GSM232037", "GSM232038", "GSM232039" ], "type": "growth protocol", "id": "GDS3179_3" }, { "dataset_id": "GDS3179", "description": "cultured with lung endothelial cells", "sample_id": [ "GSM232040", "GSM232041", "GSM232042", "GSM232043", "GSM232044", "GSM232045" ], "type": "growth protocol", "id": "GDS3179_4" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS3179", "version": 1.0, "instances": "12", "variables": 29584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3179.tab", "compression": "gz" } ], [ [ "GDS318.tab" ], { "title": "Ligand screen in B cells: stromal cell derived factor-1", "description": "Temporal analysis of effects induced by 6 nM stromal cell derived factor-1 in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE397", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS318", "description": "30 minute", "sample_id": [ "GSM5755", "GSM5756", "GSM5757" ], "type": "time", "id": "GDS318_1" }, { "dataset_id": "GDS318", "description": "60 minute", "sample_id": [ "GSM5758", "GSM5759", "GSM5760" ], "type": "time", "id": "GDS318_2" }, { "dataset_id": "GDS318", "description": "120 minute", "sample_id": [ "GSM5761", "GSM5762", "GSM5763" ], "type": "time", "id": "GDS318_3" }, { "dataset_id": "GDS318", "description": "240 minute", "sample_id": [ "GSM5764", "GSM5765", "GSM5766" ], "type": "time", "id": "GDS318_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS318", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS318.tab", "compression": "gz" } ], [ [ "GDS3180.tab" ], { "title": "Estrogen effect on myometrium of ovariectomized females: time course", "description": "Analysis of myometria of ovariectomized animals following treatment with estradiol for 6 or 24 hours. Estrogen reduces the increased uterine sympathetic nerve density induced by ovariectomy. Results provide insight into the molecular mechanisms underlying estrogen-modulated sympathetic innervation.", "type": "Expression profiling by array", "pubmed_id": "18627025", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9117", "order": "none", "update_date": "Aug 21 2008", "subsets": [ { "dataset_id": "GDS3180", "description": "control", "sample_id": [ "GSM230896", "GSM230897" ], "type": "agent", "id": "GDS3180_1" }, { "dataset_id": "GDS3180", "description": "estradiol", "sample_id": [ "GSM230895", "GSM230898" ], "type": "agent", "id": "GDS3180_2" }, { "dataset_id": "GDS3180", "description": "6 h", "sample_id": [ "GSM230897", "GSM230898" ], "type": "time", "id": "GDS3180_3" }, { "dataset_id": "GDS3180", "description": "24 h", "sample_id": [ "GSM230895", "GSM230896" ], "type": "time", "id": "GDS3180_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3180", "version": 1.0, "instances": "4", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3180.tab", "compression": "gz" } ], [ [ "GDS3181.tab" ], { "title": "Acute physiologic hyperinsulinemia effect on the skeletal muscle: time course", "description": "Analysis of skeletal muscles from normal, healthy glucose-tolerant individuals exposed to acute physiological hyperinsulinemia for up to 4 hours. Results suggest a low-grade inflammatory response which may provide insight into the etiology of insulin resistance in type 2 diabetes and obesity.", "type": "Expression profiling by array", "pubmed_id": "18334611", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE9105", "order": "none", "update_date": "Aug 22 2008", "subsets": [ { "dataset_id": "GDS3181", "description": "baseline", "sample_id": [ "GSM230429", "GSM230432", "GSM230435", "GSM230438", "GSM230441", "GSM230444", "GSM230447", "GSM230450", "GSM230453", "GSM230456", "GSM230459", "GSM230462" ], "type": "time", "id": "GDS3181_1" }, { "dataset_id": "GDS3181", "description": "30 min", "sample_id": [ "GSM230430", "GSM230433", "GSM230436", "GSM230439", "GSM230442", "GSM230445", "GSM230448", "GSM230451", "GSM230454", "GSM230457", "GSM230460", "GSM230463" ], "type": "time", "id": "GDS3181_2" }, { "dataset_id": "GDS3181", "description": "240 min", "sample_id": [ "GSM230431", "GSM230434", "GSM230437", "GSM230440", "GSM230443", "GSM230446", "GSM230449", "GSM230452", "GSM230455", "GSM230458", "GSM230461", "GSM230464" ], "type": "time", "id": "GDS3181_3" }, { "dataset_id": "GDS3181", "description": "individual 1", "sample_id": [ "GSM230429", "GSM230430", "GSM230431" ], "type": "individual", "id": "GDS3181_4" }, { "dataset_id": "GDS3181", "description": "indiviudal 2", "sample_id": [ "GSM230432", "GSM230433", "GSM230434" ], "type": "individual", "id": "GDS3181_5" }, { "dataset_id": "GDS3181", "description": "indiviudal 3", "sample_id": [ "GSM230435", "GSM230436", "GSM230437" ], "type": "individual", "id": "GDS3181_6" }, { "dataset_id": "GDS3181", "description": "indiviudal 4", "sample_id": [ "GSM230438", "GSM230439", "GSM230440" ], "type": "individual", "id": "GDS3181_7" }, { "dataset_id": "GDS3181", "description": "indiviudal 5", "sample_id": [ "GSM230441", "GSM230442", "GSM230443" ], "type": "individual", "id": "GDS3181_8" }, { "dataset_id": "GDS3181", "description": "indiviudal 6", "sample_id": [ "GSM230444", "GSM230445", "GSM230446" ], "type": "individual", "id": "GDS3181_9" }, { "dataset_id": "GDS3181", "description": "indiviudal 7", "sample_id": [ "GSM230447", "GSM230448", "GSM230449" ], "type": "individual", "id": "GDS3181_10" }, { "dataset_id": "GDS3181", "description": "indiviudal 8", "sample_id": [ "GSM230450", "GSM230451", "GSM230452" ], "type": "individual", "id": "GDS3181_11" }, { "dataset_id": "GDS3181", "description": "indiviudal 9", "sample_id": [ "GSM230453", "GSM230454", "GSM230455" ], "type": "individual", "id": "GDS3181_12" }, { "dataset_id": "GDS3181", "description": "indiviudal 10", "sample_id": [ "GSM230456", "GSM230457", "GSM230458" ], "type": "individual", "id": "GDS3181_13" }, { "dataset_id": "GDS3181", "description": "indiviudal 11", "sample_id": [ "GSM230459", "GSM230460", "GSM230461" ], "type": "individual", "id": "GDS3181_14" }, { "dataset_id": "GDS3181", "description": "indiviudal 12", "sample_id": [ "GSM230462", "GSM230463", "GSM230464" ], "type": "individual", "id": "GDS3181_15" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3181", "version": 1.0, "instances": "36", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3181.tab", "compression": "gz" } ], [ [ "GDS3182.tab" ], { "title": "Young and aged skeletal muscles response to long-term vigorous endurance exercise", "description": "Analysis of skeletal muscles from young and aged individuals undergoing vigorous endurance exercise training for over 4 years. Results provide insight into the effects of endurance exercise on age-related insulin resistance and mitochondrial dysfunction.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE9103", "order": "none", "update_date": "Aug 22 2008", "subsets": [ { "dataset_id": "GDS3182", "description": "young", "sample_id": [ "GSM230408", "GSM230409", "GSM230410", "GSM230411", "GSM230412", "GSM230413", "GSM230414", "GSM230415", "GSM230416", "GSM230417", "GSM230419", "GSM230420", "GSM230421", "GSM230422", "GSM230423", "GSM230424", "GSM230425", "GSM230426" ], "type": "age", "id": "GDS3182_1" }, { "dataset_id": "GDS3182", "description": "aged", "sample_id": [ "GSM230387", "GSM230388", "GSM230389", "GSM230390", "GSM230391", "GSM230392", "GSM230393", "GSM230394", "GSM230395", "GSM230396", "GSM230398", "GSM230399", "GSM230400", "GSM230401", "GSM230402", "GSM230403", "GSM230404", "GSM230405", "GSM230406" ], "type": "age", "id": "GDS3182_2" }, { "dataset_id": "GDS3182", "description": "sedentary", "sample_id": [ "GSM230387", "GSM230388", "GSM230389", "GSM230390", "GSM230391", "GSM230392", "GSM230393", "GSM230394", "GSM230395", "GSM230396", "GSM230408", "GSM230409", "GSM230410", "GSM230411", "GSM230412", "GSM230413", "GSM230414", "GSM230415", "GSM230416" ], "type": "protocol", "id": "GDS3182_3" }, { "dataset_id": "GDS3182", "description": "exercise", "sample_id": [ "GSM230398", "GSM230399", "GSM230400", "GSM230401", "GSM230402", "GSM230403", "GSM230404", "GSM230405", "GSM230406", "GSM230417", "GSM230419", "GSM230420", "GSM230421", "GSM230422", "GSM230423", "GSM230424", "GSM230425", "GSM230426" ], "type": "protocol", "id": "GDS3182_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3182", "version": 1.0, "instances": "37", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3182.tab", "compression": "gz" } ], [ [ "GDS3183.tab" ], { "title": "Chemokine receptor CXCR7 deficiency effect on neonatal semilunar valves", "description": "Analysis of semilunar valves from neonates lacking the chemokine receptor CXCR7. Most animals lacking CXCR7 die at birth with ventricular septal defects and semilunar heart valve malformation. Results provide insight into the role of CXCR7 in heart valve development.", "type": "Expression profiling by array", "pubmed_id": "17804806", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8710", "order": "none", "update_date": "Feb 12 2008", "subsets": [ { "dataset_id": "GDS3183", "description": "control", "sample_id": [ "GSM215725", "GSM215726" ], "type": "genotype/variation", "id": "GDS3183_1" }, { "dataset_id": "GDS3183", "description": "Cxcr7 null", "sample_id": [ "GSM215723", "GSM215724" ], "type": "genotype/variation", "id": "GDS3183_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3183", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3183.tab", "compression": "gz" } ], [ [ "GDS3184.tab" ], { "title": "Methoxyacetic acid effect on testis: time course", "description": "Analysis of testes of males exposed to methoxyacetic acid (MAA) for up to 24 hours. MAA is an in vivo metabolite of ethylene glycol monomethoxy ether, a solvent in industrial and household applications. Results provide insight into the mechanisms underlying the disruption of spermatogenesis by MAA.", "type": "Expression profiling by array", "pubmed_id": "18199887", "platform": "GPL890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "47", "value_type": "log2 ratio", "reference_series": "GSE10032", "order": "none", "update_date": "Mar 07 2008", "subsets": [ { "dataset_id": "GDS3184", "description": "4 hr", "sample_id": [ "GSM253537", "GSM253539", "GSM253562", "GSM253564", "GSM253569", "GSM253533", "GSM253538", "GSM253540", "GSM253541", "GSM253542", "GSM253568" ], "type": "time", "id": "GDS3184_1" }, { "dataset_id": "GDS3184", "description": "8 hr", "sample_id": [ "GSM253530", "GSM253543", "GSM253544", "GSM253555", "GSM253556", "GSM253565", "GSM253534", "GSM253545", "GSM253546", "GSM253557", "GSM253558", "GSM253559" ], "type": "time", "id": "GDS3184_2" }, { "dataset_id": "GDS3184", "description": "12 hr", "sample_id": [ "GSM253531", "GSM253547", "GSM253548", "GSM253566", "GSM253570", "GSM253571", "GSM253535", "GSM253550", "GSM253560", "GSM253561", "GSM253563", "GSM253572" ], "type": "time", "id": "GDS3184_3" }, { "dataset_id": "GDS3184", "description": "24 hr", "sample_id": [ "GSM253532", "GSM253551", "GSM253552", "GSM253567", "GSM253573", "GSM253574", "GSM253536", "GSM253549", "GSM253553", "GSM253554", "GSM253575", "GSM253576" ], "type": "time", "id": "GDS3184_4" }, { "dataset_id": "GDS3184", "description": "saline", "sample_id": [ "GSM253537", "GSM253539", "GSM253562", "GSM253564", "GSM253569", "GSM253530", "GSM253543", "GSM253544", "GSM253555", "GSM253556", "GSM253565", "GSM253531", "GSM253547", "GSM253548", "GSM253566", "GSM253570", "GSM253571", "GSM253532", "GSM253551", "GSM253552", "GSM253567", "GSM253573", "GSM253574" ], "type": "agent", "id": "GDS3184_5" }, { "dataset_id": "GDS3184", "description": "methoxyacetic acid", "sample_id": [ "GSM253533", "GSM253538", "GSM253540", "GSM253541", "GSM253542", "GSM253568", "GSM253534", "GSM253545", "GSM253546", "GSM253557", "GSM253558", "GSM253559", "GSM253535", "GSM253550", "GSM253560", "GSM253561", "GSM253563", "GSM253572", "GSM253536", "GSM253549", "GSM253553", "GSM253554", "GSM253575", "GSM253576" ], "type": "agent", "id": "GDS3184_6" } ], "taxid": "10116", "genes": 17250, "aggregation_function": "mean", "name": "GDS3184", "version": 1.0, "instances": "47", "variables": 17253, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3184.tab", "compression": "gz" } ], [ [ "GDS3186.tab" ], { "title": "Photoreceptor degeneration model: retina", "description": "Analysis of retinas from adult protocadherin 21 (prCAD) mutants. The prCAD mutant is a model for inherited photoreceptor degeneration. prCAD is required for the assembly and integrity of the photoreceptor outer segment. Results compared with those from light damaged retinas (GDS3187).", "type": "Expression profiling by array", "pubmed_id": "15872101", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10535", "order": "none", "update_date": "Mar 04 2008", "subsets": [ { "dataset_id": "GDS3186", "description": "wild type", "sample_id": [ "GSM266068", "GSM266069", "GSM266070" ], "type": "genotype/variation", "id": "GDS3186_1" }, { "dataset_id": "GDS3186", "description": "prCAD mutant", "sample_id": [ "GSM266071", "GSM266072", "GSM266073" ], "type": "genotype/variation", "id": "GDS3186_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3186", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3186.tab", "compression": "gz" } ], [ [ "GDS3187.tab" ], { "title": "Retina response to acute visible light exposure", "description": "Analysis of retinas from dark adapted animals following acute exposure to visible light to induce photoreceptor death. Results compared with those from retinas of prCAD mutants, a model for photoreceptor degeneration (GDS3186).", "type": "Expression profiling by array", "pubmed_id": "15872101", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10528", "order": "none", "update_date": "Mar 04 2008", "subsets": [ { "dataset_id": "GDS3187", "description": "control", "sample_id": [ "GSM265984", "GSM265993", "GSM265998" ], "type": "agent", "id": "GDS3187_1" }, { "dataset_id": "GDS3187", "description": "light", "sample_id": [ "GSM265995", "GSM265996", "GSM265997" ], "type": "agent", "id": "GDS3187_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3187", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3187.tab", "compression": "gz" } ], [ [ "GDS3188.tab" ], { "title": "Leaf response to paraquat: time course", "description": "Analysis of Ler ecotype rosette leaves for up to 4 hours following treatment with paraquat. Paraquat is an herbicide that acts as a terminal oxidant of photosystem I. In light paraquat reduces oxygen to the superoxide radical, which subsequently dismutates to hydrogen peroxide.", "type": "Expression profiling by array", "pubmed_id": "14508004", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10464", "order": "none", "update_date": "Mar 04 2008", "subsets": [ { "dataset_id": "GDS3188", "description": "control", "sample_id": [ "GSM264761", "GSM264762", "GSM264763" ], "type": "agent", "id": "GDS3188_1" }, { "dataset_id": "GDS3188", "description": "paraquat", "sample_id": [ "GSM264764", "GSM264765", "GSM264766" ], "type": "agent", "id": "GDS3188_2" }, { "dataset_id": "GDS3188", "description": "1 h", "sample_id": [ "GSM264761", "GSM264764" ], "type": "time", "id": "GDS3188_3" }, { "dataset_id": "GDS3188", "description": "2 h", "sample_id": [ "GSM264762", "GSM264765" ], "type": "time", "id": "GDS3188_4" }, { "dataset_id": "GDS3188", "description": "4 h", "sample_id": [ "GSM264763", "GSM264766" ], "type": "time", "id": "GDS3188_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3188", "version": 1.0, "instances": "6", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3188.tab", "compression": "gz" } ], [ [ "GDS3189.tab" ], { "title": "Follicle stimulating hormone suppression effect on the maturing testis", "description": "Analysis of maturing testes from animals suppressed for follicle stimulating hormone (FSH) activity from age 14 to 18 days. FSH activity suppressed by treatment with an antibody to FSH (FSHAb). Results provide insight into the role of FSH in Sertoli and male germ cell development.", "type": "Expression profiling by array", "pubmed_id": "16135663", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10293", "order": "none", "update_date": "Sep 11 2008", "subsets": [ { "dataset_id": "GDS3189", "description": "control", "sample_id": [ "GSM259915", "GSM259916" ], "type": "agent", "id": "GDS3189_1" }, { "dataset_id": "GDS3189", "description": "FSH antibody", "sample_id": [ "GSM259917", "GSM259918" ], "type": "agent", "id": "GDS3189_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3189", "version": 1.0, "instances": "4", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3189.tab", "compression": "gz" } ], [ [ "GDS319.tab" ], { "title": "Ligand screen in B cells: secondary lymphoid-organ chemokine", "description": "Temporal analysis of effects induced by 1.5 nM secondary lymphoid-organ chemokine in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE398", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS319", "description": "30 minute", "sample_id": [ "GSM5767", "GSM5768", "GSM5769" ], "type": "time", "id": "GDS319_1" }, { "dataset_id": "GDS319", "description": "60 minute", "sample_id": [ "GSM5770", "GSM5771", "GSM5772" ], "type": "time", "id": "GDS319_2" }, { "dataset_id": "GDS319", "description": "120 minute", "sample_id": [ "GSM5773", "GSM5774", "GSM5775" ], "type": "time", "id": "GDS319_3" }, { "dataset_id": "GDS319", "description": "240 minute", "sample_id": [ "GSM5776", "GSM5777", "GSM5778" ], "type": "time", "id": "GDS319_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS319", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS319.tab", "compression": "gz" } ], [ [ "GDS3190.tab" ], { "title": "Macrophage response to lipopolysaccharide and interleukin-10 co-treatment: time course", "description": "Analysis of interleukin-10 (IL-10)-deficient macrophages at various time points up to 30 minutes following co-stimulation with lipopolysaccharide (LPS) and IL-10. LPS elicits an inflammatory response. Results provide insight into molecular mechanisms underlying the anti-inflammatory effect of IL-10.", "type": "Expression profiling by array", "pubmed_id": "18025162", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE9509", "order": "none", "update_date": "Sep 23 2008", "subsets": [ { "dataset_id": "GDS3190", "description": "LPS", "sample_id": [ "GSM241128", "GSM241129", "GSM241130", "GSM241134", "GSM241135", "GSM241136", "GSM241140", "GSM241141", "GSM241142" ], "type": "agent", "id": "GDS3190_1" }, { "dataset_id": "GDS3190", "description": "LPS and IL-10", "sample_id": [ "GSM241131", "GSM241132", "GSM241133", "GSM241137", "GSM241138", "GSM241139", "GSM241143", "GSM241144", "GSM241145" ], "type": "agent", "id": "GDS3190_2" }, { "dataset_id": "GDS3190", "description": "10 min", "sample_id": [ "GSM241128", "GSM241129", "GSM241130", "GSM241131", "GSM241132", "GSM241133" ], "type": "time", "id": "GDS3190_3" }, { "dataset_id": "GDS3190", "description": "20 min", "sample_id": [ "GSM241134", "GSM241135", "GSM241136", "GSM241137", "GSM241138", "GSM241139" ], "type": "time", "id": "GDS3190_4" }, { "dataset_id": "GDS3190", "description": "30 min", "sample_id": [ "GSM241140", "GSM241141", "GSM241142", "GSM241143", "GSM241144", "GSM241145" ], "type": "time", "id": "GDS3190_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3190", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3190.tab", "compression": "gz" } ], [ [ "GDS3191.tab" ], { "title": "Natural killer cell response to interleukin-2 treatment: time course", "description": "Analysis of resting natural killer (NK) cells and NK cells activated with interleukin-2 (IL-2) for up to 24 hours. The effector function of NK cells is enhanced by cytokines such as IL-2. Results provide insight into the molecular events in NK cell activation.", "type": "Expression profiling by array", "pubmed_id": "17623099", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8059", "order": "none", "update_date": "Sep 23 2008", "subsets": [ { "dataset_id": "GDS3191", "description": "CD8 positive T cell", "sample_id": [ "GSM198958" ], "type": "cell type", "id": "GDS3191_1" }, { "dataset_id": "GDS3191", "description": "Natural killer cell", "sample_id": [ "GSM198942", "GSM198943", "GSM198944", "GSM198945" ], "type": "cell type", "id": "GDS3191_2" }, { "dataset_id": "GDS3191", "description": "lymphoid tissues", "sample_id": [ "GSM198959" ], "type": "cell type", "id": "GDS3191_3" }, { "dataset_id": "GDS3191", "description": "none", "sample_id": [ "GSM198942", "GSM198958", "GSM198959" ], "type": "agent", "id": "GDS3191_4" }, { "dataset_id": "GDS3191", "description": "IL-2", "sample_id": [ "GSM198943", "GSM198944", "GSM198945" ], "type": "agent", "id": "GDS3191_5" }, { "dataset_id": "GDS3191", "description": "control", "sample_id": [ "GSM198942", "GSM198958", "GSM198959" ], "type": "time", "id": "GDS3191_6" }, { "dataset_id": "GDS3191", "description": "2 h", "sample_id": [ "GSM198943" ], "type": "time", "id": "GDS3191_7" }, { "dataset_id": "GDS3191", "description": "8 h", "sample_id": [ "GSM198944" ], "type": "time", "id": "GDS3191_8" }, { "dataset_id": "GDS3191", "description": "24 h", "sample_id": [ "GSM198945" ], "type": "time", "id": "GDS3191_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3191", "version": 1.0, "instances": "6", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3191.tab", "compression": "gz" } ], [ [ "GDS3192.tab" ], { "title": "Rheumatoid arthritis: synovial macrophages", "description": "Analysis of synovial fluid macrophages from 5 patients with rheumatoid arthritis (RA). The chronic inflammation and progressive joint destruction observed in RA are mediated in part by macrophages. Results provide insight into the molecular mechanisms underlying RA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "18345002", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10500", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3192", "description": "control", "sample_id": [ "GSM265436", "GSM265439", "GSM265445" ], "type": "disease state", "id": "GDS3192_1" }, { "dataset_id": "GDS3192", "description": "rheumatoid arthritis", "sample_id": [ "GSM265020", "GSM265036", "GSM265361", "GSM265363", "GSM265366" ], "type": "disease state", "id": "GDS3192_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3192", "version": 1.0, "instances": "8", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3192.tab", "compression": "gz" } ], [ [ "GDS3193.tab" ], { "title": "Monocyte-derived dendritic cell response to VAF347", "description": "Analysis of immature monocyte-derived dendritic cells following activation with anti-CD40 antibodies for 8 hours in the presence of VAF347. VAF347 is a low molecular weight compound that inhibits allergic lung inflammation in vivo. Results provide insight into the mechanism of action of VAF347.", "type": "Expression profiling by array", "pubmed_id": "18270326", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10463", "order": "none", "update_date": "Mar 05 2008", "subsets": [ { "dataset_id": "GDS3193", "description": "control", "sample_id": [ "GSM264755", "GSM264756" ], "type": "agent", "id": "GDS3193_1" }, { "dataset_id": "GDS3193", "description": "VAF347", "sample_id": [ "GSM264757", "GSM264758" ], "type": "agent", "id": "GDS3193_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3193", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3193.tab", "compression": "gz" } ], [ [ "GDS3194.tab" ], { "title": "Medroxyprogesterone acetate effect on the pregnant cervix", "description": "Analysis of embryonic day 15 (E15) pregnant cervices treated with medroxyprogesterone acetate (MPA). The use of progestational agents such as MPA reduces the incidence of pre-term birth. Results provide insight into the molecular mechanisms underlying this effect.", "type": "Expression profiling by array", "pubmed_id": "18313454", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE10392", "order": "none", "update_date": "Oct 02 2008", "subsets": [ { "dataset_id": "GDS3194", "description": "control", "sample_id": [ "GSM262682", "GSM262683", "GSM262684", "GSM262685", "GSM262686", "GSM262687" ], "type": "agent", "id": "GDS3194_1" }, { "dataset_id": "GDS3194", "description": "medroxyprogesterone acetate", "sample_id": [ "GSM262676", "GSM262677", "GSM262678", "GSM262679", "GSM262680", "GSM262681" ], "type": "agent", "id": "GDS3194_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3194", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3194.tab", "compression": "gz" } ], [ [ "GDS3195.tab" ], { "title": "Hexose-6-phosphate dehydrogenase deficiency effect on skeletal muscles", "description": "Analysis of skeletal muscles from animals lacking hexose-6-phosphate dehydrogenase (H6PD). H6PD null animals develop severe skeletal myopathy characterized by switching of Type II to Type I fibers. Results provide insight into the molecular basis of the myopathy induced by the absence of H6PD.", "type": "Expression profiling by array", "pubmed_id": "18222920", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE10347", "order": "none", "update_date": "Jul 31 2008", "subsets": [ { "dataset_id": "GDS3195", "description": "wild type", "sample_id": [ "GSM261510", "GSM261511", "GSM261512", "GSM261516", "GSM261517", "GSM261518" ], "type": "genotype/variation", "id": "GDS3195_1" }, { "dataset_id": "GDS3195", "description": "hexose-6-phosphate dehydrogenase knockout", "sample_id": [ "GSM261507", "GSM261508", "GSM261509", "GSM261513", "GSM261514", "GSM261515" ], "type": "genotype/variation", "id": "GDS3195_2" }, { "dataset_id": "GDS3195", "description": "soleus", "sample_id": [ "GSM261507", "GSM261508", "GSM261509", "GSM261510", "GSM261511", "GSM261512" ], "type": "tissue", "id": "GDS3195_3" }, { "dataset_id": "GDS3195", "description": "tibialis anterior", "sample_id": [ "GSM261513", "GSM261514", "GSM261515", "GSM261516", "GSM261517", "GSM261518" ], "type": "tissue", "id": "GDS3195_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3195", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3195.tab", "compression": "gz" } ], [ [ "GDS3196.tab" ], { "title": "Non-thermal low intensity pulsed ultrasound effect on leukemia cell line", "description": "Analysis of leukemia U937 cells exposed to non-thermal low intensity pulsed ultrasound (LIPUS) for 6 hours to induce apoptosis. Results provide insight into the molecular mechanisms underlying the apoptotic response to nonthermal LIPUS.", "type": "Expression profiling by array", "pubmed_id": "18571840", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10212", "order": "none", "update_date": "Jul 31 2008", "subsets": [ { "dataset_id": "GDS3196", "description": "control", "sample_id": [ "GSM257871", "GSM257872" ], "type": "stress", "id": "GDS3196_1" }, { "dataset_id": "GDS3196", "description": "ultrasound", "sample_id": [ "GSM257873", "GSM257874" ], "type": "stress", "id": "GDS3196_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3196", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3196.tab", "compression": "gz" } ], [ [ "GDS3197.tab" ], { "title": "Transcriptional coactivator PGC-1beta hypomorphic mutation effect on the liver", "description": "Analysis of livers of animals bearing a hypomorphic PGC-1beta mutation. PGC-1beta is a transcriptional coactivator that stimulates mitochondrial biogenesis and respiration of cells. Results provide insight into the function of PGC-1beta in the liver.", "type": "Expression profiling by array", "pubmed_id": "17141629", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6210", "order": "none", "update_date": "Mar 14 2008", "subsets": [ { "dataset_id": "GDS3197", "description": "widl type", "sample_id": [ "GSM143367", "GSM143368", "GSM143384" ], "type": "genotype/variation", "id": "GDS3197_1" }, { "dataset_id": "GDS3197", "description": "PGC-1beta mutant", "sample_id": [ "GSM143364", "GSM143382", "GSM143383" ], "type": "genotype/variation", "id": "GDS3197_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3197", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3197.tab", "compression": "gz" } ], [ [ "GDS3198.tab" ], { "title": "Abf1 DNA-binding mutant", "description": "Analysis of temperature sensitive Abf1 mutant cells subjected to a temperature of 37 degrees C to dissociate the mutant protein from its DNA binding sites. Results provide insight into the contribution of this general regulatory factor to transcription genome-wide.", "type": "Expression profiling by array", "pubmed_id": "17158163", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6073", "order": "none", "update_date": "Mar 19 2008", "subsets": [ { "dataset_id": "GDS3198", "description": "wild type", "sample_id": [ "GSM140786", "GSM140800", "GSM140801" ], "type": "genotype/variation", "id": "GDS3198_1" }, { "dataset_id": "GDS3198", "description": "Abf1 mutant", "sample_id": [ "GSM140802", "GSM140803", "GSM140804" ], "type": "genotype/variation", "id": "GDS3198_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3198", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3198.tab", "compression": "gz" } ], [ [ "GDS3199.tab" ], { "title": "Anti-Mullerian hormone effect on ovary", "description": "Analysis of postnatal day 4 ovaries cultured with anti-Mullerian hormone (AMH) for 10 days. AMH is an extracellular signaling molecule that inhibits the primordial to primary follicle transition in ovary. Results provide insight into molecular mechanisms underlying primordial follicle development.", "type": "Expression profiling by array", "pubmed_id": "17660231", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10557", "order": "none", "update_date": "Apr 11 2008", "subsets": [ { "dataset_id": "GDS3199", "description": "control", "sample_id": [ "GSM266747", "GSM266748" ], "type": "agent", "id": "GDS3199_1" }, { "dataset_id": "GDS3199", "description": "anti-Mullerian hormone", "sample_id": [ "GSM266749", "GSM266750" ], "type": "agent", "id": "GDS3199_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3199", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3199.tab", "compression": "gz" } ], [ [ "GDS320.tab" ], { "title": "Ligand screen in B cells: terbutaline", "description": "Temporal analysis of effects induced by 10 uM terbutaline in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE399", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS320", "description": "30 minute", "sample_id": [ "GSM5779", "GSM5780", "GSM5781" ], "type": "time", "id": "GDS320_1" }, { "dataset_id": "GDS320", "description": "60 minute", "sample_id": [ "GSM5782", "GSM5783", "GSM5784" ], "type": "time", "id": "GDS320_2" }, { "dataset_id": "GDS320", "description": "120 minute", "sample_id": [ "GSM5785", "GSM5786", "GSM5787" ], "type": "time", "id": "GDS320_3" }, { "dataset_id": "GDS320", "description": "240 minute", "sample_id": [ "GSM5788", "GSM5789", "GSM5790" ], "type": "time", "id": "GDS320_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS320", "version": 1.0, "instances": "12", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS320.tab", "compression": "gz" } ], [ [ "GDS3203.tab" ], { "title": "Monocyte to macrophage differentiation", "description": "Analysis of monocytes following up to 168 hours of adherence-induced differentiation. Monocytes differentiate into macrophages, which are critical in the pathogenesis of many diseases. Results provide insight into the molecular mechanisms underlying monocyte to macrophage differentiation.", "type": "Expression profiling by array", "pubmed_id": "18276018", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8286", "order": "none", "update_date": "May 06 2008", "subsets": [ { "dataset_id": "GDS3203", "description": "0 hr", "sample_id": [ "GSM205587", "GSM205588", "GSM205590" ], "type": "time", "id": "GDS3203_1" }, { "dataset_id": "GDS3203", "description": "16 hr", "sample_id": [ "GSM205591", "GSM205592", "GSM205594" ], "type": "time", "id": "GDS3203_2" }, { "dataset_id": "GDS3203", "description": "168 hr", "sample_id": [ "GSM205556", "GSM205558", "GSM205585" ], "type": "time", "id": "GDS3203_3" }, { "dataset_id": "GDS3203", "description": "monocytes", "sample_id": [ "GSM205587", "GSM205588", "GSM205590", "GSM205591", "GSM205592", "GSM205594" ], "type": "cell type", "id": "GDS3203_4" }, { "dataset_id": "GDS3203", "description": "macrophage", "sample_id": [ "GSM205556", "GSM205558", "GSM205585" ], "type": "cell type", "id": "GDS3203_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3203", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3203.tab", "compression": "gz" } ], [ [ "GDS3207.tab" ], { "title": "Chronic loneliness effect on peripheral blood leukocytes", "description": "Analysis of leukocytes from individuals experiencing chronically high levels of subjective social isolation (loneliness). Social environment is known to influence human health. Results provide insight into transcriptional alterations in the immune system induced by chronic social isolation.", "type": "Expression profiling by array", "pubmed_id": "17854483", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE7148", "order": "none", "update_date": "May 01 2008", "subsets": [ { "dataset_id": "GDS3207", "description": "High levels of social isolation", "sample_id": [ "GSM172173", "GSM172174", "GSM172175", "GSM172176", "GSM172177", "GSM172178", "GSM172179" ], "type": "individual", "id": "GDS3207_1" }, { "dataset_id": "GDS3207", "description": "Low levels of social isolation", "sample_id": [ "GSM172180", "GSM172181", "GSM172182", "GSM172183", "GSM172184", "GSM172185", "GSM172186" ], "type": "individual", "id": "GDS3207_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3207", "version": 1.0, "instances": "14", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3207.tab", "compression": "gz" } ], [ [ "GDS3209.tab" ], { "title": "Integrin alpha7 overexpression effect on skeletal muscle", "description": "Analysis of skeletal muscle from transgenic females overexpressing integrin alpha7. Enhancement of alpha7 integrin levels alleviates pathology in a Duchenne muscular dystrophy murine model. Results provide insight into effects of increased integrin alpha7 on skeletal muscle transcription in vivo.", "type": "Expression profiling by array", "pubmed_id": "18045857", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8313", "order": "none", "update_date": "Apr 24 2008", "subsets": [ { "dataset_id": "GDS3209", "description": "control", "sample_id": [ "GSM206030", "GSM206033", "GSM206037" ], "type": "protocol", "id": "GDS3209_1" }, { "dataset_id": "GDS3209", "description": "integrin alpha7 overexpression", "sample_id": [ "GSM206048", "GSM206052", "GSM206053" ], "type": "protocol", "id": "GDS3209_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3209", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3209.tab", "compression": "gz" } ], [ [ "GDS321.tab" ], { "title": "Ligand screen in B cells: transforming growth factor-beta", "description": "Temporal analysis of effects induced by 0.4 nM transforming growth factor-beta in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE400", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS321", "description": "30 minute", "sample_id": [ "GSM5791", "GSM5792", "GSM5793" ], "type": "time", "id": "GDS321_1" }, { "dataset_id": "GDS321", "description": "60 minute", "sample_id": [ "GSM5794", "GSM5795" ], "type": "time", "id": "GDS321_2" }, { "dataset_id": "GDS321", "description": "120 minute", "sample_id": [ "GSM5796", "GSM5797" ], "type": "time", "id": "GDS321_3" }, { "dataset_id": "GDS321", "description": "240 minute", "sample_id": [ "GSM5798", "GSM5799" ], "type": "time", "id": "GDS321_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS321", "version": 1.0, "instances": "9", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS321.tab", "compression": "gz" } ], [ [ "GDS3210.tab" ], { "title": "Airway epithelial cells response to Sendai virus infection in vitro", "description": "Analysis of primary culture tracheal epithelial cells following infection with Sendai virus (SeV), a common paramyxovirus.Respiratory paramyxoviral infections are a leading cause of serious respiratory disease. Results provide insight into the role of epithelial cells in antiviral defense.", "type": "Expression profiling by array", "pubmed_id": "18292557", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE10211", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3210", "description": "control", "sample_id": [ "GSM257861", "GSM257863", "GSM257864", "GSM257867", "GSM257869", "GSM257870" ], "type": "infection", "id": "GDS3210_1" }, { "dataset_id": "GDS3210", "description": "Sendai virus", "sample_id": [ "GSM257862", "GSM257865", "GSM257866", "GSM257868" ], "type": "infection", "id": "GDS3210_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3210", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3210.tab", "compression": "gz" } ], [ [ "GDS3211.tab" ], { "title": "Gingival epithelial cell line response to oral pathogen infections", "description": "Analysis of gingival epithelial HIGK cells infected with Aggregatibacter actinomycetemcomitans or Porphyromonas gingivalis. A. actinomycetemcomitans and P. gingivalis cause periodontal infections. Results provide insight into differences in epithelial cell responses to these pathogens.", "type": "Expression profiling by array", "pubmed_id": "15888084", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE9723", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3211", "description": "Porphyromonas gingivalis", "sample_id": [ "GSM245725", "GSM245726", "GSM245727", "GSM245728" ], "type": "infection", "id": "GDS3211_1" }, { "dataset_id": "GDS3211", "description": "control", "sample_id": [ "GSM245729", "GSM245730", "GSM245731", "GSM245732" ], "type": "infection", "id": "GDS3211_2" }, { "dataset_id": "GDS3211", "description": "Aggregatibacter actinomycetemcomitans", "sample_id": [ "GSM245733", "GSM245734", "GSM245735", "GSM245736" ], "type": "infection", "id": "GDS3211_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3211", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3211.tab", "compression": "gz" } ], [ [ "GDS3215.tab" ], { "title": "13-cis retinoic acid effect on SEB-1 sebocyte cell line", "description": "Analysis of cultured sebaceous gland cells (SEB-1 sebocytes) treated with 13-cis retinoic acid (13-cis RA, isotretinoin), a potent acne treatment agent that reduces the size and secretion of sebaceous glands. Results provide insight into the molecular basis for 13-cis RA's acne-clearing effect.", "type": "Expression profiling by array", "pubmed_id": "18317594", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10432", "order": "none", "update_date": "May 15 2008", "subsets": [ { "dataset_id": "GDS3215", "description": "control", "sample_id": [ "GSM263915", "GSM263916", "GSM263917" ], "type": "agent", "id": "GDS3215_1" }, { "dataset_id": "GDS3215", "description": "13-cis RA", "sample_id": [ "GSM263918", "GSM263919", "GSM263920" ], "type": "agent", "id": "GDS3215_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3215", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3215.tab", "compression": "gz" } ], [ [ "GDS3216.tab" ], { "title": "Whole seedling roots response to salinity stress: time course", "description": "Analysis of whole roots from 5-day-old Columbia seedlings subjected to 140 mM NaCl for up to 32 hours. High salinity is an important agricultural contaminant with complex effects on root physiology. Results provide insight into molecular mechanisms underlying the salt stress response in whole root.", "type": "Expression profiling by array", "pubmed_id": "18436742", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7642", "order": "none", "update_date": "Jun 02 2008", "subsets": [ { "dataset_id": "GDS3216", "description": "control", "sample_id": [ "GSM184925", "GSM184926" ], "type": "stress", "id": "GDS3216_1" }, { "dataset_id": "GDS3216", "description": "NaCl", "sample_id": [ "GSM184927", "GSM184928", "GSM184929", "GSM184930", "GSM184931", "GSM184932", "GSM184933", "GSM184934", "GSM184935", "GSM184936" ], "type": "stress", "id": "GDS3216_2" }, { "dataset_id": "GDS3216", "description": "0 h", "sample_id": [ "GSM184925", "GSM184926" ], "type": "time", "id": "GDS3216_3" }, { "dataset_id": "GDS3216", "description": "0.5 h", "sample_id": [ "GSM184927", "GSM184928" ], "type": "time", "id": "GDS3216_4" }, { "dataset_id": "GDS3216", "description": "1 h", "sample_id": [ "GSM184929", "GSM184930" ], "type": "time", "id": "GDS3216_5" }, { "dataset_id": "GDS3216", "description": "4 h", "sample_id": [ "GSM184931", "GSM184932" ], "type": "time", "id": "GDS3216_6" }, { "dataset_id": "GDS3216", "description": "16 h", "sample_id": [ "GSM184933", "GSM184934" ], "type": "time", "id": "GDS3216_7" }, { "dataset_id": "GDS3216", "description": "32 h", "sample_id": [ "GSM184935", "GSM184936" ], "type": "time", "id": "GDS3216_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3216", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3216.tab", "compression": "gz" } ], [ [ "GDS3217.tab" ], { "title": "Estradiol effect on breast cancer cell line expressing estrogen receptor: time course", "description": "Analysis of estrogen receptor (ER)-positive MCF7 breast cancer cells up to 48 hours following treatment with estradiol (E2). ERs facilitate the transcriptional effects of hormones. These results, together with ChIP-PET results, suggest potential correlations between ER binding and gene regulation.", "type": "Expression profiling by array", "pubmed_id": "17542648", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE11352", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3217", "description": "12 h", "sample_id": [ "GSM286756", "GSM286757", "GSM286758", "GSM286759", "GSM286760", "GSM286761" ], "type": "time", "id": "GDS3217_1" }, { "dataset_id": "GDS3217", "description": "24 h", "sample_id": [ "GSM286762", "GSM286763", "GSM286764", "GSM286765", "GSM286766", "GSM286767" ], "type": "time", "id": "GDS3217_2" }, { "dataset_id": "GDS3217", "description": "48 h", "sample_id": [ "GSM286768", "GSM286769", "GSM286770", "GSM286771", "GSM286772", "GSM286773" ], "type": "time", "id": "GDS3217_3" }, { "dataset_id": "GDS3217", "description": "control", "sample_id": [ "GSM286756", "GSM286757", "GSM286758", "GSM286762", "GSM286763", "GSM286764", "GSM286768", "GSM286769", "GSM286770" ], "type": "agent", "id": "GDS3217_4" }, { "dataset_id": "GDS3217", "description": "estradiol", "sample_id": [ "GSM286759", "GSM286760", "GSM286761", "GSM286765", "GSM286766", "GSM286767", "GSM286771", "GSM286772", "GSM286773" ], "type": "agent", "id": "GDS3217_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3217", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3217.tab", "compression": "gz" } ], [ [ "GDS3218.tab" ], { "title": "13-cis retinoic acid effect on skin", "description": "Analysis of upper back skin biopsies of acne patients treated with 13-cis retinoic acid (13-cis RA, isotretinoin), a potent acne treatment agent that reduces the size and secretion of sebaceous glands. Results provide insight into the molecular basis for 13-cis RA's acne-clearing effect.", "type": "Expression profiling by array", "pubmed_id": "18317594", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE10433", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3218", "description": "control", "sample_id": [ "GSM263921", "GSM263923", "GSM263925", "GSM263927", "GSM263929", "GSM263931" ], "type": "agent", "id": "GDS3218_1" }, { "dataset_id": "GDS3218", "description": "13-cis RA", "sample_id": [ "GSM263922", "GSM263924", "GSM263926", "GSM263928", "GSM263930", "GSM263932" ], "type": "agent", "id": "GDS3218_2" }, { "dataset_id": "GDS3218", "description": "patient 1", "sample_id": [ "GSM263921", "GSM263922" ], "type": "individual", "id": "GDS3218_3" }, { "dataset_id": "GDS3218", "description": "patient 2", "sample_id": [ "GSM263923", "GSM263924" ], "type": "individual", "id": "GDS3218_4" }, { "dataset_id": "GDS3218", "description": "patient 4", "sample_id": [ "GSM263925", "GSM263926" ], "type": "individual", "id": "GDS3218_5" }, { "dataset_id": "GDS3218", "description": "patient 5", "sample_id": [ "GSM263927", "GSM263928" ], "type": "individual", "id": "GDS3218_6" }, { "dataset_id": "GDS3218", "description": "patient 6", "sample_id": [ "GSM263929", "GSM263930" ], "type": "individual", "id": "GDS3218_7" }, { "dataset_id": "GDS3218", "description": "patient 7", "sample_id": [ "GSM263931", "GSM263932" ], "type": "individual", "id": "GDS3218_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3218", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3218.tab", "compression": "gz" } ], [ [ "GDS322.tab" ], { "title": "Ligand screen in B cells: tumor necrosis factor-alpha", "description": "Temporal analysis of effects induced by 6 nM tumor necrosis factor-alpha in male c57BL/6 B cells. Cells incubated in culture with ligand and samples removed at several time points up to 4 hours. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE401", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS322", "description": "30 minute", "sample_id": [ "GSM5800", "GSM5801", "GSM5802" ], "type": "time", "id": "GDS322_1" }, { "dataset_id": "GDS322", "description": "60 minute", "sample_id": [ "GSM5803", "GSM5804", "GSM5805" ], "type": "time", "id": "GDS322_2" }, { "dataset_id": "GDS322", "description": "120 minute", "sample_id": [ "GSM5806", "GSM5807", "GSM5808" ], "type": "time", "id": "GDS322_3" }, { "dataset_id": "GDS322", "description": "240 minute", "sample_id": [ "GSM5809", "GSM5810" ], "type": "time", "id": "GDS322_4" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS322", "version": 1.0, "instances": "11", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS322.tab", "compression": "gz" } ], [ [ "GDS3220.tab" ], { "title": "YAP overexpression effect on MCF10A mammary epithelial cell line", "description": "Analysis of MCF10A mammary epithelial cells overexpressing the transcriptional coactivator YAP. The Hippo pathway impinges on YAP in mammals to coordinate cell proliferation and apoptosis. Results provide insight into molecular components of the Hippo pathway in mammalian cells.", "type": "Expression profiling by array", "pubmed_id": "18413746", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10196", "order": "none", "update_date": "Jun 03 2008", "subsets": [ { "dataset_id": "GDS3220", "description": "control", "sample_id": [ "GSM257525", "GSM257527" ], "type": "protocol", "id": "GDS3220_1" }, { "dataset_id": "GDS3220", "description": "YAP overexpression", "sample_id": [ "GSM257526", "GSM257528" ], "type": "protocol", "id": "GDS3220_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3220", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3220.tab", "compression": "gz" } ], [ [ "GDS3221.tab" ], { "title": "Liver response to human and chimpanzee diets", "description": "Analysis of livers from NMR-1 females fed human and chimpanzee diets for 2 weeks. Human diet is markedly different from the diets of closely related primate species. Results provide insight into the influence of different diets on gene expression patterns.", "type": "Expression profiling by array", "pubmed_id": "18231591", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE6297", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3221", "description": "chimpanzee diet", "sample_id": [ "GSM144707", "GSM144708", "GSM144709", "GSM144710", "GSM144711", "GSM144712" ], "type": "protocol", "id": "GDS3221_1" }, { "dataset_id": "GDS3221", "description": "human fast food diet", "sample_id": [ "GSM144713", "GSM144714", "GSM144715", "GSM144716", "GSM144717", "GSM144718" ], "type": "protocol", "id": "GDS3221_2" }, { "dataset_id": "GDS3221", "description": "human cafe diet", "sample_id": [ "GSM144719", "GSM144720", "GSM144721", "GSM144722", "GSM144723", "GSM144724" ], "type": "protocol", "id": "GDS3221_3" }, { "dataset_id": "GDS3221", "description": "control", "sample_id": [ "GSM144725", "GSM144726", "GSM144727", "GSM144728", "GSM144729", "GSM144730" ], "type": "protocol", "id": "GDS3221_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3221", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3221.tab", "compression": "gz" } ], [ [ "GDS3222.tab" ], { "title": "Cytotoxic T cell line response to interleukin-2: time course", "description": "Analysis of cytotoxic T cell line (CTLL-2) at various time points up to 24 hours following interleukin-2 cytokine (IL-2) stimulation. IL-2 regulates T cell proliferation and differentiation. Results provide insight into the expression patterns of IL-2 responsive genes.", "type": "Expression profiling by array", "pubmed_id": [ "18184039", "21722407" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE6085", "order": "none", "update_date": "May 14 2015", "subsets": [ { "dataset_id": "GDS3222", "description": "control", "sample_id": [ "GSM183455", "GSM183456", "GSM183457", "GSM183458", "GSM183459", "GSM183460", "GSM183461", "GSM108334", "GSM108335", "GSM108336", "GSM108337", "GSM108338" ], "type": "agent", "id": "GDS3222_1" }, { "dataset_id": "GDS3222", "description": "interleukin-2", "sample_id": [ "GSM140923", "GSM140924", "GSM140925", "GSM140926", "GSM140927", "GSM140928", "GSM140929", "GSM140930", "GSM140931", "GSM108339", "GSM108340", "GSM108341", "GSM108342", "GSM140932", "GSM140933", "GSM140934", "GSM140935", "GSM140936", "GSM140937", "GSM140938", "GSM140939", "GSM140940", "GSM140941", "GSM140942", "GSM140943", "GSM140944", "GSM140945", "GSM140946", "GSM140947", "GSM140948", "GSM140949" ], "type": "agent", "id": "GDS3222_2" }, { "dataset_id": "GDS3222", "description": "0 h", "sample_id": [ "GSM108334", "GSM108335", "GSM108336", "GSM108337", "GSM108338" ], "type": "time", "id": "GDS3222_3" }, { "dataset_id": "GDS3222", "description": "0.5 h", "sample_id": [ "GSM140923", "GSM140924", "GSM140925" ], "type": "time", "id": "GDS3222_4" }, { "dataset_id": "GDS3222", "description": "1 h", "sample_id": [ "GSM140926", "GSM140927", "GSM140928" ], "type": "time", "id": "GDS3222_5" }, { "dataset_id": "GDS3222", "description": "2 h", "sample_id": [ "GSM140929", "GSM140930", "GSM140931" ], "type": "time", "id": "GDS3222_6" }, { "dataset_id": "GDS3222", "description": "4 h", "sample_id": [ "GSM183455", "GSM183456", "GSM183457", "GSM183458", "GSM108339", "GSM108340", "GSM108341", "GSM108342" ], "type": "time", "id": "GDS3222_7" }, { "dataset_id": "GDS3222", "description": "6 h", "sample_id": [ "GSM140932", "GSM140933", "GSM140934" ], "type": "time", "id": "GDS3222_8" }, { "dataset_id": "GDS3222", "description": "8 h", "sample_id": [ "GSM183459", "GSM183460", "GSM183461", "GSM140935", "GSM140936", "GSM140937" ], "type": "time", "id": "GDS3222_9" }, { "dataset_id": "GDS3222", "description": "10 h", "sample_id": [ "GSM140938", "GSM140939", "GSM140940" ], "type": "time", "id": "GDS3222_10" }, { "dataset_id": "GDS3222", "description": "12 h", "sample_id": [ "GSM140941", "GSM140942", "GSM140943" ], "type": "time", "id": "GDS3222_11" }, { "dataset_id": "GDS3222", "description": "16 h", "sample_id": [ "GSM140944", "GSM140945", "GSM140946" ], "type": "time", "id": "GDS3222_12" }, { "dataset_id": "GDS3222", "description": "24 h", "sample_id": [ "GSM140947", "GSM140948", "GSM140949" ], "type": "time", "id": "GDS3222_13" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3222", "version": 1.0, "instances": "43", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3222.tab", "compression": "gz" } ], [ [ "GDS3223.tab" ], { "title": "Interleukin-13 effect on esophageal epithelial cells from eosinophilic esophagitis patients", "description": "Analysis of primary esophageal epithelial cells from eosinophilic esophagitis (EE) patients following 100ng/mL interleukin-13 (IL-13) stimulation. The T-helper type 2 cytokine IL-13 plays a pivotal role in eosinophilic inflammation. Results provide insight into the role of IL-13 in EE pathogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "18073124", "20208004" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8853", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3223", "description": "control", "sample_id": [ "GSM220152", "GSM220154", "GSM220156" ], "type": "agent", "id": "GDS3223_1" }, { "dataset_id": "GDS3223", "description": "interleukin-13", "sample_id": [ "GSM220153", "GSM220155", "GSM220157" ], "type": "agent", "id": "GDS3223_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3223", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3223.tab", "compression": "gz" } ], [ [ "GDS3224.tab" ], { "title": "Heart left ventricle and diaphragm comparison", "description": "Analysis of normal heart left ventricle and diaphragm of young-adult Sprague Dawley males. Concurrent rhythmic contractions of the diaphragm and heart are needed to sustain life. Results provide insight into transcriptional strategies for ensuring long-term energy supplies in these two muscles.", "type": "Expression profiling by array", "pubmed_id": "18207466", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6943", "order": "none", "update_date": "Jun 06 2008", "subsets": [ { "dataset_id": "GDS3224", "description": "diaphragm", "sample_id": [ "GSM160089", "GSM160090", "GSM160091", "GSM160092", "GSM160093", "GSM160094" ], "type": "tissue", "id": "GDS3224_1" }, { "dataset_id": "GDS3224", "description": "heart", "sample_id": [ "GSM160095", "GSM160096", "GSM160097", "GSM160098", "GSM160099", "GSM160100" ], "type": "tissue", "id": "GDS3224_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3224", "version": 1.0, "instances": "12", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3224.tab", "compression": "gz" } ], [ [ "GDS3225.tab" ], { "title": "Selenate effect on roots", "description": "Analysis of roots from 10-day-old plants grown with selenate, the major form of bioavailable selenium (Se) in soil. Plants have the capacity to attenuate the toxic effects of Se. Results provide insight into molecular mechanisms underlying Se-stress responses and Se tolerance mechanisms in plants.", "type": "Expression profiling by array", "pubmed_id": "18251864", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9311", "order": "none", "update_date": "Jun 11 2008", "subsets": [ { "dataset_id": "GDS3225", "description": "control", "sample_id": [ "GSM237280", "GSM237281" ], "type": "agent", "id": "GDS3225_1" }, { "dataset_id": "GDS3225", "description": "selenate", "sample_id": [ "GSM237282", "GSM237283" ], "type": "agent", "id": "GDS3225_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3225", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3225.tab", "compression": "gz" } ], [ [ "GDS3226.tab" ], { "title": "Interleukin-22 effect on colon cultures", "description": "Analysis of C57BL/6 colon cultures treated with 10 ng/ml of interleukin-22 (IL-22) for 24 hours. IL-22, a member of the IL-10 family of cytokines, can induce a marked antimicrobial response in vitro. Results provide insight into the molecular basis of IL-22 induced host defense mechanisms.", "type": "Expression profiling by array", "pubmed_id": "18264109", "platform": "GPL2872", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log10 ratio", "reference_series": "GSE10010", "order": "none", "update_date": "Jun 13 2008", "subsets": [ { "dataset_id": "GDS3226", "description": "control", "sample_id": [ "GSM252890", "GSM252931", "GSM252932" ], "type": "agent", "id": "GDS3226_1" }, { "dataset_id": "GDS3226", "description": "interleukin-22", "sample_id": [ "GSM252933", "GSM252934", "GSM252935" ], "type": "agent", "id": "GDS3226_2" } ], "taxid": "10090", "genes": 28025, "aggregation_function": "mean", "name": "GDS3226", "version": 1.0, "instances": "6", "variables": 28027, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3226.tab", "compression": "gz" } ], [ [ "GDS3227.tab" ], { "title": "Social isolation stress-induced aggression model", "description": "Analysis of heads of Canton-S males subjected to social isolation (single-housed). Social experience with conspecifics is an environmental influence on aggressiveness common to many species. Results provide insight into the molecular basis of the effect of social experience on aggressiveness.", "type": "Expression profiling by array", "pubmed_id": "18408154", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6994", "order": "none", "update_date": "Jul 30 2008", "subsets": [ { "dataset_id": "GDS3227", "description": "single-housed", "sample_id": [ "GSM161249", "GSM161252", "GSM161253" ], "type": "protocol", "id": "GDS3227_1" }, { "dataset_id": "GDS3227", "description": "group-housed", "sample_id": [ "GSM161259", "GSM161260", "GSM161262" ], "type": "protocol", "id": "GDS3227_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3227", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3227.tab", "compression": "gz" } ], [ [ "GDS3228.tab" ], { "title": "Apelin knockout effect on the heart", "description": "Analysis of hearts from Apelin knockouts (KO) subjected to pressure overload by aortic banding (AB). Banded Apelin KOs develop severe and progressive heart failure. Results provide insight into the role of Apelin in maintaining cardiovascular homeostasis on pressure overload.", "type": "Expression profiling by array", "pubmed_id": "17673668", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7781", "order": "none", "update_date": "Jul 31 2008", "subsets": [ { "dataset_id": "GDS3228", "description": "wild type", "sample_id": [ "GSM188558", "GSM188559", "GSM188560", "GSM188561", "GSM188562", "GSM188563" ], "type": "genotype/variation", "id": "GDS3228_1" }, { "dataset_id": "GDS3228", "description": "apelin knockout", "sample_id": [ "GSM188564", "GSM188565", "GSM188566", "GSM188567", "GSM188568", "GSM188569" ], "type": "genotype/variation", "id": "GDS3228_2" }, { "dataset_id": "GDS3228", "description": "aortic banding", "sample_id": [ "GSM188558", "GSM188559", "GSM188560", "GSM188564", "GSM188565", "GSM188566" ], "type": "protocol", "id": "GDS3228_3" }, { "dataset_id": "GDS3228", "description": "control", "sample_id": [ "GSM188561", "GSM188562", "GSM188563", "GSM188567", "GSM188568", "GSM188569" ], "type": "protocol", "id": "GDS3228_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3228", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3228.tab", "compression": "gz" } ], [ [ "GDS323.tab" ], { "title": "Ligand screen in B cells: untreated", "description": "Temporal analysis of untreated male c57BL/6 B cells. Spleen from male c57BL/6 used as reference.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL260", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16273", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "41", "value_type": "log ratio", "reference_series": "GSE402", "order": "ordered", "update_date": "Nov 18 2003", "subsets": [ { "dataset_id": "GDS323", "description": "0 minute", "sample_id": [ "GSM5811", "GSM5812", "GSM5813", "GSM5814", "GSM5815", "GSM5816", "GSM5817", "GSM5818", "GSM5819", "GSM5820", "GSM5821", "GSM5822", "GSM5823", "GSM5824", "GSM5825", "GSM5826", "GSM5827", "GSM5828", "GSM5829", "GSM5830", "GSM5831", "GSM5832", "GSM5833", "GSM5834", "GSM5835", "GSM5836", "GSM5837" ], "type": "time", "id": "GDS323_1" }, { "dataset_id": "GDS323", "description": "30 minute", "sample_id": [ "GSM5838", "GSM5839", "GSM5840" ], "type": "time", "id": "GDS323_2" }, { "dataset_id": "GDS323", "description": "60 minute", "sample_id": [ "GSM5841", "GSM5842", "GSM5843", "GSM5844" ], "type": "time", "id": "GDS323_3" }, { "dataset_id": "GDS323", "description": "120 minute", "sample_id": [ "GSM5845", "GSM5846", "GSM5847" ], "type": "time", "id": "GDS323_4" }, { "dataset_id": "GDS323", "description": "240 minute", "sample_id": [ "GSM5848", "GSM5849", "GSM5850", "GSM5851" ], "type": "time", "id": "GDS323_5" } ], "taxid": "10090", "genes": 11161, "aggregation_function": "mean", "name": "GDS323", "version": 1.0, "instances": "41", "variables": 11163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS323.tab", "compression": "gz" } ], [ [ "GDS3232.tab" ], { "title": "Brain response to human and chimpanzee diets", "description": "Analysis of brains from NMR1 females fed human and chimpanzee diets for 2 weeks. The human diet is markedly different from the diets of closely related primate species. Results provide insight into the influence of different diets on gene expression patterns in brain.", "type": "Expression profiling by array", "pubmed_id": "18231591", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE6285", "order": "none", "update_date": "Jun 03 2008", "subsets": [ { "dataset_id": "GDS3232", "description": "chimpanzee diet", "sample_id": [ "GSM144526", "GSM144527", "GSM144528", "GSM144529", "GSM144530", "GSM144531" ], "type": "protocol", "id": "GDS3232_1" }, { "dataset_id": "GDS3232", "description": "human fast food diet", "sample_id": [ "GSM144532", "GSM144533", "GSM144534", "GSM144535", "GSM144536", "GSM144537" ], "type": "protocol", "id": "GDS3232_2" }, { "dataset_id": "GDS3232", "description": "human cafe diet", "sample_id": [ "GSM144538", "GSM144539", "GSM144540", "GSM144541", "GSM144542", "GSM144543" ], "type": "protocol", "id": "GDS3232_3" }, { "dataset_id": "GDS3232", "description": "control", "sample_id": [ "GSM144544", "GSM144545", "GSM144546", "GSM144547", "GSM144548", "GSM144549" ], "type": "protocol", "id": "GDS3232_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3232", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3232.tab", "compression": "gz" } ], [ [ "GDS3233.tab" ], { "title": "Cervical cancer tumorigenesis", "description": "Analysis of cervical cancer (CC) primary tumors and cell lines. Chromosomal amplification is a common cellular mechanism of gene activation in tumorigenesis; chromosome 20 is a commonly gained chromosome in CC. Results provide insight into the potential role of chromosome 20 gain in CC progression.", "type": "Expression profiling by array", "pubmed_id": "18506748", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "61", "value_type": "count", "reference_series": "GSE9750", "order": "none", "update_date": "Jun 04 2008", "subsets": [ { "dataset_id": "GDS3233", "description": "cervical cancer cell line", "sample_id": [ "GSM246087", "GSM246088", "GSM246089", "GSM246090", "GSM246119", "GSM246120", "GSM246121", "GSM246122", "GSM246123" ], "type": "disease state", "id": "GDS3233_1" }, { "dataset_id": "GDS3233", "description": "normal", "sample_id": [ "GSM246422", "GSM246423", "GSM246484", "GSM246485", "GSM246486", "GSM246487", "GSM246488", "GSM246489", "GSM246490", "GSM246491", "GSM247162", "GSM247163", "GSM247164", "GSM247165", "GSM247166", "GSM247168", "GSM247169", "GSM247171", "GSM247173", "GSM247174", "GSM247175", "GSM247188", "GSM247189", "GSM247190" ], "type": "disease state", "id": "GDS3233_2" }, { "dataset_id": "GDS3233", "description": "cervical cancer primary tumor", "sample_id": [ "GSM247650", "GSM247651", "GSM247652", "GSM247653", "GSM247654", "GSM247655", "GSM247656", "GSM247657", "GSM247658", "GSM247659", "GSM247660", "GSM247661", "GSM247662", "GSM247663", "GSM247856", "GSM247857", "GSM247859", "GSM247860", "GSM247862", "GSM247864", "GSM247865", "GSM247866", "GSM247876", "GSM247877", "GSM247878", "GSM247879", "GSM247881", "GSM247883" ], "type": "disease state", "id": "GDS3233_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3233", "version": 1.0, "instances": "61", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3233.tab", "compression": "gz" } ], [ [ "GDS324.tab" ], { "title": "Hypothalamus response to lipopolysaccharide and restraint stress", "description": "Analysis of gene expression profiles in the paraventricular nucleus of the hypothalamus in male C57BL6. Mice subjected to either bacterial lipopolysaccharide (LPS) challenge, restraint stress or a saline control for 1 or 3 hours.", "type": "Expression profiling by array", "pubmed_id": "12843263", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE367", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS324", "description": "lipopolysaccharide", "sample_id": [ "GSM5415", "GSM5418", "GSM5429", "GSM5430" ], "type": "stress", "id": "GDS324_1" }, { "dataset_id": "GDS324", "description": "restraint", "sample_id": [ "GSM5416", "GSM5417", "GSM5431", "GSM5432" ], "type": "stress", "id": "GDS324_2" }, { "dataset_id": "GDS324", "description": "saline control", "sample_id": [ "GSM5419", "GSM5421", "GSM5433", "GSM5434" ], "type": "stress", "id": "GDS324_3" }, { "dataset_id": "GDS324", "description": "1 hour", "sample_id": [ "GSM5419", "GSM5421", "GSM5429", "GSM5430", "GSM5431", "GSM5432" ], "type": "time", "id": "GDS324_4" }, { "dataset_id": "GDS324", "description": "3 hour", "sample_id": [ "GSM5415", "GSM5416", "GSM5417", "GSM5418", "GSM5433", "GSM5434" ], "type": "time", "id": "GDS324_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS324", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS324.tab", "compression": "gz" } ], [ [ "GDS3243.tab" ], { "title": "Selenate effect on shoots", "description": "Analysis of shoots from 10-day-old plants grown with selenate, the major form of bioavailable selenium (Se) in soil. Plants have the capacity to attenuate the toxic effects of Se. Results provide insight into molecular mechanisms underlying Se-stress responses and Se tolerance mechanisms in plants.", "type": "Expression profiling by array", "pubmed_id": "18251864", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9311", "order": "none", "update_date": "Jun 11 2008", "subsets": [ { "dataset_id": "GDS3243", "description": "control", "sample_id": [ "GSM237292", "GSM237293" ], "type": "agent", "id": "GDS3243_1" }, { "dataset_id": "GDS3243", "description": "selenate", "sample_id": [ "GSM237294", "GSM237295" ], "type": "agent", "id": "GDS3243_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3243", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3243.tab", "compression": "gz" } ], [ [ "GDS3245.tab" ], { "title": "S288C cell response to pterostilbene", "description": "Analysis of strain S288C cells subjected to pterostilbene at the IC50 concentration (70uM) for one generation (3h). Pterostilbene, an analog of resveratrol, is a phytoalexin exhibiting potent antifungal activity. Results provide insight into the molecular pathways affected by pterostilbene.", "type": "Expression profiling by array", "pubmed_id": "18366703", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10554", "order": "none", "update_date": "Jul 31 2008", "subsets": [ { "dataset_id": "GDS3245", "description": "pterostilbene", "sample_id": [ "GSM266726", "GSM266728", "GSM266729" ], "type": "agent", "id": "GDS3245_1" }, { "dataset_id": "GDS3245", "description": "control", "sample_id": [ "GSM266723", "GSM266724", "GSM266725" ], "type": "agent", "id": "GDS3245_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3245", "version": 1.0, "instances": "6", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3245.tab", "compression": "gz" } ], [ [ "GDS325.tab" ], { "title": "Macrophage response to IL-6, and SOCS3 effect", "description": "Bone marrow-derived macrophages from mice that had received fetal liver cells from SOCS3+/+ or SOCS3-/- embryos analyzed. Macrophages either unstimulated, or stimulated for 100 or 400 minutes with 10 ng/ml IL-6.", "type": "Expression profiling by array", "pubmed_id": "12754506", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE411", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS325", "description": "wild type", "sample_id": [ "GSM6072", "GSM6073", "GSM6074", "GSM6078", "GSM6079", "GSM6080", "GSM6084", "GSM6085" ], "type": "strain", "id": "GDS325_1" }, { "dataset_id": "GDS325", "description": "SOCS3-/-", "sample_id": [ "GSM6075", "GSM6076", "GSM6077", "GSM6081", "GSM6082", "GSM6083", "GSM6086", "GSM6087", "GSM6088" ], "type": "strain", "id": "GDS325_2" }, { "dataset_id": "GDS325", "description": "0 minute", "sample_id": [ "GSM6072", "GSM6075", "GSM6078", "GSM6081", "GSM6086" ], "type": "time", "id": "GDS325_3" }, { "dataset_id": "GDS325", "description": "100 minute", "sample_id": [ "GSM6073", "GSM6076", "GSM6079", "GSM6082", "GSM6084", "GSM6087" ], "type": "time", "id": "GDS325_4" }, { "dataset_id": "GDS325", "description": "400 minute", "sample_id": [ "GSM6074", "GSM6077", "GSM6080", "GSM6083", "GSM6085", "GSM6088" ], "type": "time", "id": "GDS325_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS325", "version": 1.0, "instances": "17", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS325.tab", "compression": "gz" } ], [ [ "GDS3252.tab" ], { "title": "Young adult response to Pseudomonas aeruginosa PA14: time course", "description": "Analysis of strain fer-15(b26);fem-1(hc17) young adults exposed for up to 8 hrs to pathogenic Pseudomonas aeruginosa strain PA14, less pathogenic PA14 mutant gacA, and E. coli strain OP50 (normal food source). Results provide insight into the molecular basis of the response to a bacterial pathogen.", "type": "Expression profiling by array", "pubmed_id": "17096597", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE5793", "order": "none", "update_date": "Aug 28 2008", "subsets": [ { "dataset_id": "GDS3252", "description": "Escherichia coli OP50", "sample_id": [ "GSM135322", "GSM135323", "GSM135324", "GSM135325", "GSM135326", "GSM135327" ], "type": "infection", "id": "GDS3252_1" }, { "dataset_id": "GDS3252", "description": "Pseudomonas aeruginosa PA14 mutant gacA", "sample_id": [ "GSM135328", "GSM135329", "GSM135330", "GSM135340", "GSM135355", "GSM135365" ], "type": "infection", "id": "GDS3252_2" }, { "dataset_id": "GDS3252", "description": "Pseudomonas aeruginosa PA14", "sample_id": [ "GSM135382", "GSM135383", "GSM135384", "GSM135385", "GSM135386", "GSM135387" ], "type": "infection", "id": "GDS3252_3" }, { "dataset_id": "GDS3252", "description": "4 h", "sample_id": [ "GSM135322", "GSM135323", "GSM135324", "GSM135328", "GSM135329", "GSM135330", "GSM135382", "GSM135383", "GSM135384" ], "type": "time", "id": "GDS3252_4" }, { "dataset_id": "GDS3252", "description": "8 h", "sample_id": [ "GSM135325", "GSM135326", "GSM135327", "GSM135340", "GSM135355", "GSM135365", "GSM135385", "GSM135386", "GSM135387" ], "type": "time", "id": "GDS3252_5" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3252", "version": 1.0, "instances": "18", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3252.tab", "compression": "gz" } ], [ [ "GDS3253.tab" ], { "title": "MAP kinase PMK-1 and transcription factor DAF-16 deletion mutants", "description": "Analysis of daf-2(e1368) loss-of-function mutant and daf-2(e1368);pmk-1(km25) and daf-2(e1368);daf-16(mgDf47) double mutants. PMK-1 and DAF-16 confer enhanced pathogen resistance on daf-2 mutants relative to wild-type. Results suggest DAF-16 and PMK-1 upregulate distinct genes to promote immunity.", "type": "Expression profiling by array", "pubmed_id": "17096597", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE5801", "order": "none", "update_date": "Aug 28 2008", "subsets": [ { "dataset_id": "GDS3253", "description": "control", "sample_id": [ "GSM135395", "GSM135467", "GSM135468" ], "type": "genotype/variation", "id": "GDS3253_1" }, { "dataset_id": "GDS3253", "description": "DAF-16 deletion mutant", "sample_id": [ "GSM135469", "GSM135476", "GSM135477" ], "type": "genotype/variation", "id": "GDS3253_2" }, { "dataset_id": "GDS3253", "description": "PMK-1 deletion mutant", "sample_id": [ "GSM135478", "GSM135479", "GSM135480" ], "type": "genotype/variation", "id": "GDS3253_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3253", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3253.tab", "compression": "gz" } ], [ [ "GDS3254.tab" ], { "title": "LIM homeobox Lhx8 deficiency effect on newborn ovaries", "description": "Wild type newborn ovary RNA was compared to newborn ovary RNA from Lhx8 deficient (-/-) or Nobox deficient (-/-) mice. Results indicate that Lxh8 is a critical factor for maintenance and differentiation of ooyctes during early embryogenesis and it acts in part by down-regulating the Nobox pathway.", "type": "Expression profiling by array", "pubmed_id": "18509161", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE11897", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3254", "description": "Nobox null", "sample_id": [ "GSM177882", "GSM177883" ], "type": "genotype/variation", "id": "GDS3254_1" }, { "dataset_id": "GDS3254", "description": "Lhx8 null", "sample_id": [ "GSM178084", "GSM178085", "GSM178086" ], "type": "genotype/variation", "id": "GDS3254_2" }, { "dataset_id": "GDS3254", "description": "wild type", "sample_id": [ "GSM180004", "GSM180005" ], "type": "genotype/variation", "id": "GDS3254_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3254", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3254.tab", "compression": "gz" } ], [ [ "GDS3255.tab" ], { "title": "Held out wing mutant embryos", "description": "Analysis of mutant embryos lacking both maternal and zygotic Held out wing (HOW), an RNA-binding protein (RBP) highly expressed in the mesoderm during early embryogenesis. how mutant embryos exhibit aberrant mesoderm spreading. Results provide insight into the role of HOW in mesoderm development.", "type": "Expression profiling by array", "pubmed_id": "17728343", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7772", "order": "none", "update_date": "Jul 09 2008", "subsets": [ { "dataset_id": "GDS3255", "description": "wildtype", "sample_id": [ "GSM188344", "GSM188346" ], "type": "genotype/variation", "id": "GDS3255_1" }, { "dataset_id": "GDS3255", "description": "how mutant", "sample_id": [ "GSM188345", "GSM188347" ], "type": "genotype/variation", "id": "GDS3255_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS3255", "version": 1.0, "instances": "4", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3255.tab", "compression": "gz" } ], [ [ "GDS3256.tab" ], { "title": "Metaphase II stage oocytes matured in vivo", "description": "Analysis of young, untreated metaphase II (MII) oocytes. Results provide insight into the baseline of genes expressed in in vivo matured oocytes and into the molecular mechanisms underlying biological processes such as oogenesis, folliculogenesis, fertilization, and embryonic development.", "type": "Expression profiling by array", "pubmed_id": [ "16968779", "25035411" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12034", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS3256", "description": "oocyte", "sample_id": [ "GSM304260", "GSM304261", "GSM304262" ], "type": "cell type", "id": "GDS3256_1" }, { "dataset_id": "GDS3256", "description": "control", "sample_id": [ "GSM304263", "GSM304264", "GSM304265" ], "type": "cell type", "id": "GDS3256_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3256", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3256.tab", "compression": "gz" } ], [ [ "GDS3257.tab" ], { "title": "Cigarette smoking effect on lung adenocarcinoma", "description": "Analysis of different tumor stage adenocarcinoma and paired normal lung tissues of current, former and never smokers. To date, tobacco smoking is responsible for over 90% of lung cancers. Results provide insight into the molecular basis of lung carcinogenesis induced by smoking.", "type": "Expression profiling by array", "pubmed_id": "18297132", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "107", "value_type": "transformed count", "reference_series": "GSE10072", "order": "none", "update_date": "Oct 24 2008", "subsets": [ { "dataset_id": "GDS3257", "description": "tumor", "sample_id": [ "GSM254625", "GSM254627", "GSM254629", "GSM254630", "GSM254631", "GSM254633", "GSM254636", "GSM254637", "GSM254639", "GSM254641", "GSM254642", "GSM254645", "GSM254647", "GSM254648", "GSM254650", "GSM254652", "GSM254654", "GSM254656", "GSM254657", "GSM254659", "GSM254661", "GSM254663", "GSM254664", "GSM254666", "GSM254668", "GSM254670", "GSM254672", "GSM254674", "GSM254675", "GSM254678", "GSM254680", "GSM254682", "GSM254684", "GSM254686", "GSM254687", "GSM254688", "GSM254690", "GSM254692", "GSM254694", "GSM254696", "GSM254697", "GSM254698", "GSM254700", "GSM254701", "GSM254704", "GSM254705", "GSM254707", "GSM254709", "GSM254714", "GSM254716", "GSM254718", "GSM254720", "GSM254721", "GSM254722", "GSM254724", "GSM254726", "GSM254728", "GSM254729" ], "type": "tissue", "id": "GDS3257_1" }, { "dataset_id": "GDS3257", "description": "normal", "sample_id": [ "GSM254626", "GSM254628", "GSM254632", "GSM254634", "GSM254635", "GSM254638", "GSM254640", "GSM254643", "GSM254644", "GSM254646", "GSM254649", "GSM254651", "GSM254653", "GSM254655", "GSM254658", "GSM254660", "GSM254662", "GSM254665", "GSM254667", "GSM254669", "GSM254671", "GSM254673", "GSM254676", "GSM254677", "GSM254679", "GSM254681", "GSM254683", "GSM254685", "GSM254689", "GSM254691", "GSM254693", "GSM254695", "GSM254699", "GSM254702", "GSM254703", "GSM254706", "GSM254708", "GSM254710", "GSM254711", "GSM254712", "GSM254713", "GSM254715", "GSM254717", "GSM254719", "GSM254723", "GSM254725", "GSM254727", "GSM254730", "GSM254731" ], "type": "tissue", "id": "GDS3257_2" }, { "dataset_id": "GDS3257", "description": "never smoker", "sample_id": [ "GSM254625", "GSM254626", "GSM254629", "GSM254635", "GSM254636", "GSM254639", "GSM254640", "GSM254643", "GSM254648", "GSM254649", "GSM254652", "GSM254653", "GSM254658", "GSM254659", "GSM254660", "GSM254673", "GSM254674", "GSM254680", "GSM254681", "GSM254686", "GSM254693", "GSM254694", "GSM254695", "GSM254700", "GSM254701", "GSM254702", "GSM254718", "GSM254719", "GSM254726", "GSM254727", "GSM254728" ], "type": "individual", "id": "GDS3257_3" }, { "dataset_id": "GDS3257", "description": "former smoker", "sample_id": [ "GSM254627", "GSM254628", "GSM254630", "GSM254631", "GSM254632", "GSM254633", "GSM254634", "GSM254646", "GSM254654", "GSM254655", "GSM254656", "GSM254657", "GSM254662", "GSM254664", "GSM254668", "GSM254669", "GSM254670", "GSM254671", "GSM254677", "GSM254697", "GSM254699", "GSM254703", "GSM254704", "GSM254707", "GSM254708", "GSM254711", "GSM254714", "GSM254715", "GSM254716", "GSM254717", "GSM254720", "GSM254722", "GSM254723", "GSM254729", "GSM254730", "GSM254731" ], "type": "individual", "id": "GDS3257_4" }, { "dataset_id": "GDS3257", "description": "current smoker", "sample_id": [ "GSM254637", "GSM254638", "GSM254641", "GSM254642", "GSM254644", "GSM254645", "GSM254647", "GSM254650", "GSM254651", "GSM254661", "GSM254663", "GSM254665", "GSM254666", "GSM254667", "GSM254672", "GSM254675", "GSM254676", "GSM254678", "GSM254679", "GSM254682", "GSM254683", "GSM254684", "GSM254685", "GSM254687", "GSM254688", "GSM254689", "GSM254690", "GSM254691", "GSM254692", "GSM254696", "GSM254698", "GSM254705", "GSM254706", "GSM254709", "GSM254710", "GSM254712", "GSM254713", "GSM254721", "GSM254724", "GSM254725" ], "type": "individual", "id": "GDS3257_5" }, { "dataset_id": "GDS3257", "description": "stage I", "sample_id": [ "GSM254629", "GSM254643", "GSM254644", "GSM254645", "GSM254648", "GSM254649", "GSM254655", "GSM254660", "GSM254665", "GSM254666", "GSM254667", "GSM254668", "GSM254669", "GSM254672", "GSM254675", "GSM254676", "GSM254678", "GSM254679", "GSM254688", "GSM254689", "GSM254690", "GSM254691", "GSM254692", "GSM254693", "GSM254694", "GSM254695", "GSM254696", "GSM254697", "GSM254699", "GSM254701", "GSM254702", "GSM254703", "GSM254704", "GSM254705", "GSM254706", "GSM254707", "GSM254708", "GSM254712", "GSM254713", "GSM254714", "GSM254715", "GSM254722", "GSM254726", "GSM254727", "GSM254728" ], "type": "disease state", "id": "GDS3257_6" }, { "dataset_id": "GDS3257", "description": "stage II", "sample_id": [ "GSM254625", "GSM254626", "GSM254627", "GSM254628", "GSM254630", "GSM254633", "GSM254634", "GSM254639", "GSM254640", "GSM254641", "GSM254642", "GSM254646", "GSM254647", "GSM254652", "GSM254661", "GSM254663", "GSM254670", "GSM254671", "GSM254682", "GSM254683", "GSM254698", "GSM254700", "GSM254709", "GSM254710", "GSM254711", "GSM254716", "GSM254717", "GSM254720", "GSM254721", "GSM254723", "GSM254724", "GSM254725", "GSM254729", "GSM254730", "GSM254731" ], "type": "disease state", "id": "GDS3257_7" }, { "dataset_id": "GDS3257", "description": "stage III", "sample_id": [ "GSM254631", "GSM254632", "GSM254635", "GSM254636", "GSM254650", "GSM254651", "GSM254653", "GSM254654", "GSM254656", "GSM254657", "GSM254658", "GSM254659", "GSM254662", "GSM254664", "GSM254677", "GSM254680", "GSM254681", "GSM254686", "GSM254687", "GSM254718", "GSM254719" ], "type": "disease state", "id": "GDS3257_8" }, { "dataset_id": "GDS3257", "description": "stage IV", "sample_id": [ "GSM254637", "GSM254638", "GSM254673", "GSM254674", "GSM254684", "GSM254685" ], "type": "disease state", "id": "GDS3257_9" }, { "dataset_id": "GDS3257", "description": "female", "sample_id": [ "GSM254629", "GSM254635", "GSM254636", "GSM254637", "GSM254638", "GSM254639", "GSM254640", "GSM254642", "GSM254648", "GSM254649", "GSM254650", "GSM254651", "GSM254652", "GSM254653", "GSM254654", "GSM254656", "GSM254658", "GSM254659", "GSM254660", "GSM254661", "GSM254665", "GSM254672", "GSM254680", "GSM254681", "GSM254686", "GSM254687", "GSM254691", "GSM254692", "GSM254693", "GSM254694", "GSM254695", "GSM254698", "GSM254700", "GSM254701", "GSM254702", "GSM254718", "GSM254719", "GSM254728" ], "type": "gender", "id": "GDS3257_10" }, { "dataset_id": "GDS3257", "description": "male", "sample_id": [ "GSM254625", "GSM254626", "GSM254627", "GSM254628", "GSM254630", "GSM254631", "GSM254632", "GSM254633", "GSM254634", "GSM254641", "GSM254643", "GSM254644", "GSM254645", "GSM254646", "GSM254647", "GSM254655", "GSM254657", "GSM254662", "GSM254663", "GSM254664", "GSM254666", "GSM254667", "GSM254668", "GSM254669", "GSM254670", "GSM254671", "GSM254673", "GSM254674", "GSM254675", "GSM254676", "GSM254677", "GSM254678", "GSM254679", "GSM254682", "GSM254683", "GSM254684", "GSM254685", "GSM254688", "GSM254689", "GSM254690", "GSM254696", "GSM254697", "GSM254699", "GSM254703", "GSM254704", "GSM254705", "GSM254706", "GSM254707", "GSM254708", "GSM254709", "GSM254710", "GSM254711", "GSM254712", "GSM254713", "GSM254714", "GSM254715", "GSM254716", "GSM254717", "GSM254720", "GSM254721", "GSM254722", "GSM254723", "GSM254724", "GSM254725", "GSM254726", "GSM254727", "GSM254729", "GSM254730", "GSM254731" ], "type": "gender", "id": "GDS3257_11" }, { "dataset_id": "GDS3257", "description": "early stage tumor tissue", "sample_id": [ "GSM254629", "GSM254643", "GSM254644", "GSM254645", "GSM254648", "GSM254649", "GSM254655", "GSM254660", "GSM254665", "GSM254666", "GSM254667", "GSM254668", "GSM254669", "GSM254672", "GSM254675", "GSM254676", "GSM254678", "GSM254679", "GSM254688", "GSM254689", "GSM254690", "GSM254691", "GSM254692", "GSM254693", "GSM254694", "GSM254695", "GSM254696", "GSM254697", "GSM254699", "GSM254701", "GSM254702", "GSM254703", "GSM254704", "GSM254705", "GSM254706", "GSM254707", "GSM254708", "GSM254712", "GSM254713", "GSM254714", "GSM254715", "GSM254722", "GSM254726", "GSM254727", "GSM254728", "GSM254625", "GSM254626", "GSM254627", "GSM254628", "GSM254630", "GSM254633", "GSM254634", "GSM254639", "GSM254640", "GSM254641", "GSM254642", "GSM254646", "GSM254647", "GSM254652", "GSM254661", "GSM254663", "GSM254670", "GSM254671", "GSM254682", "GSM254683", "GSM254698", "GSM254700", "GSM254709", "GSM254710", "GSM254711", "GSM254716", "GSM254717", "GSM254720", "GSM254721", "GSM254723", "GSM254724", "GSM254725", "GSM254729", "GSM254730", "GSM254731" ], "type": "other", "id": "GDS3257_12" }, { "dataset_id": "GDS3257", "description": "late stage tumor tissue", "sample_id": [ "GSM254631", "GSM254632", "GSM254635", "GSM254636", "GSM254650", "GSM254651", "GSM254653", "GSM254654", "GSM254656", "GSM254657", "GSM254658", "GSM254659", "GSM254662", "GSM254664", "GSM254677", "GSM254680", "GSM254681", "GSM254686", "GSM254687", "GSM254718", "GSM254719", "GSM254637", "GSM254638", "GSM254673", "GSM254674", "GSM254684", "GSM254685" ], "type": "other", "id": "GDS3257_13" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3257", "version": 1.0, "instances": "107", "variables": 14069, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3257.tab", "compression": "gz" } ], [ [ "GDS3258.tab" ], { "title": "Monocyte-derived macrophage response to decoy receptor 3", "description": "Analysis of monocyte-derived macrophages (MDMs) treated with decoy receptor 3 (DcR3) recombinant fusion protein. DcR3, a TNF receptor superfamily member, is up-regulated in tumors from diverse lineages. Results provide insight into the role of DcR3 in tumor-associated macrophage (TAM) development.", "type": "Expression profiling by array", "pubmed_id": "18349319", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE10856", "order": "none", "update_date": "Oct 24 2008", "subsets": [ { "dataset_id": "GDS3258", "description": "control", "sample_id": [ "GSM275417", "GSM275419" ], "type": "agent", "id": "GDS3258_1" }, { "dataset_id": "GDS3258", "description": "decoy receptor 3", "sample_id": [ "GSM275418", "GSM275420" ], "type": "agent", "id": "GDS3258_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3258", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3258.tab", "compression": "gz" } ], [ [ "GDS3259.tab" ], { "title": "Liver response to Pacific ciguatoxin-1: time course", "description": "Analysis of adult male C57/BL6 livers exposed to a symptomatic dose of the marine neurotoxin Pacific ciguatoxin-1 (P-CTX-1) for up to 24 hours. Ciguatoxins (CTX) are polyether neurotoxins that target voltage-gated sodium channels. Results provide insight into the hepatic molecular response to CTX.", "type": "Expression profiling by array", "pubmed_id": "18353800", "platform": "GPL2872", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log10 ratio", "reference_series": "GSE10768", "order": "none", "update_date": "Oct 24 2008", "subsets": [ { "dataset_id": "GDS3259", "description": "1 h", "sample_id": [ "GSM271869", "GSM271870", "GSM271871" ], "type": "time", "id": "GDS3259_1" }, { "dataset_id": "GDS3259", "description": "4 h", "sample_id": [ "GSM271872", "GSM271873", "GSM271874" ], "type": "time", "id": "GDS3259_2" }, { "dataset_id": "GDS3259", "description": "24 h", "sample_id": [ "GSM271875", "GSM271876", "GSM271877" ], "type": "time", "id": "GDS3259_3" } ], "taxid": "10090", "genes": 28025, "aggregation_function": "mean", "name": "GDS3259", "version": 1.0, "instances": "9", "variables": 28027, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3259.tab", "compression": "gz" } ], [ [ "GDS3260.tab" ], { "title": "Intestinal tissue xenograft response to pathogen Shigella flexneri infection in vivo", "description": "Analysis of human intestinal xenotransplants infected with Shigella flexneri (virulent wild-type M90T, virulent mxiE mutant, and avirulent BS176 strains). Virulent S. flexneri are highly contagious enteric pathogens. Results provide insight into the intestinal innate immune response to infection.", "type": "Expression profiling by array", "pubmed_id": "18426984", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE8636", "order": "none", "update_date": "Jan 02 2009", "subsets": [ { "dataset_id": "GDS3260", "description": "control", "sample_id": [ "GSM213913", "GSM213914" ], "type": "infection", "id": "GDS3260_1" }, { "dataset_id": "GDS3260", "description": "avirulent BS176 strain", "sample_id": [ "GSM213915", "GSM213916" ], "type": "infection", "id": "GDS3260_2" }, { "dataset_id": "GDS3260", "description": "virulent M90T strain", "sample_id": [ "GSM213917", "GSM213918" ], "type": "infection", "id": "GDS3260_3" }, { "dataset_id": "GDS3260", "description": "virulent mxiE mutant strain", "sample_id": [ "GSM213919", "GSM213920" ], "type": "infection", "id": "GDS3260_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3260", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3260.tab", "compression": "gz" } ], [ [ "GDS3262.tab" ], { "title": "Pediatric malignant germ cell tumors: yolk sac tumors and seminomas", "description": "Analysis of yolk sac tumors (YSTs) and seminomas, the two principal histological variants of pediatric malignant germ cell tumors (MGCTs). Seminomas and YSTs are presumed to arise from the same progenitor cell. Results provide insight into the molecular basis for the divergence of pediatric MGCTs.", "type": "Expression profiling by array", "pubmed_id": "18519683", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE10615", "order": "none", "update_date": "Nov 26 2008", "subsets": [ { "dataset_id": "GDS3262", "description": "Seminoma", "sample_id": [ "GSM267499", "GSM267500", "GSM267501", "GSM267502", "GSM267503", "GSM267504", "GSM267505", "GSM267506", "GSM267507" ], "type": "disease state", "id": "GDS3262_1" }, { "dataset_id": "GDS3262", "description": "Yolk sac tumor", "sample_id": [ "GSM267508", "GSM267509", "GSM267510", "GSM267511", "GSM267512", "GSM267513", "GSM267514", "GSM267515", "GSM267516", "GSM267517", "GSM267518", "GSM267519", "GSM267520", "GSM267521", "GSM267522", "GSM267523", "GSM267524", "GSM267525" ], "type": "disease state", "id": "GDS3262_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3262", "version": 1.0, "instances": "27", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3262.tab", "compression": "gz" } ], [ [ "GDS3268.tab" ], { "title": "Colon epithelial biopsies of ulcerative colitis patients", "description": "Analysis of inflamed and un-inflamed colon epithelial biopsies of 67 ulcerative colitis (UC) patients from different anatomical locations of the gastrointestinal (GI) tract. Results provide insight into the regional variation of gene expression in UC patients and the pathogenesis of UC.", "type": "Expression profiling by array", "pubmed_id": "18523026", "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "202", "value_type": "log2 ratio", "reference_series": "GSE11223", "order": "none", "update_date": "Jan 05 2009", "subsets": [ { "dataset_id": "GDS3268", "description": "normal", "sample_id": [ "GSM282855", "GSM282856", "GSM282857", "GSM282858", "GSM282859", "GSM282860", "GSM282861", "GSM282862", "GSM282863", "GSM282864", "GSM282865", "GSM282866", "GSM282867", "GSM282868", "GSM282869", "GSM282870", "GSM282871", "GSM282872", "GSM282873", "GSM282874", "GSM282875", "GSM282876", "GSM282877", "GSM282878", "GSM282879", "GSM282880", "GSM282881", "GSM282882", "GSM282883", "GSM282884", "GSM282885", "GSM282886", "GSM282887", "GSM282888", "GSM282889", "GSM282890", "GSM282891", "GSM282892", "GSM282893", "GSM282894", "GSM282895", "GSM282896", "GSM282897", "GSM282898", "GSM282899", "GSM282900", "GSM282901", "GSM282902", "GSM282903", "GSM282904", "GSM282905", "GSM282906", "GSM282907", "GSM282908", "GSM282909", "GSM282910", "GSM282911", "GSM282912", "GSM282913", "GSM282914", "GSM282915", "GSM282916", "GSM282917", "GSM282918", "GSM282919", "GSM282920", "GSM282921", "GSM282922", "GSM282923", "GSM282924", "GSM282925", "GSM282926", "GSM282927" ], "type": "disease state", "id": "GDS3268_1" }, { "dataset_id": "GDS3268", "description": "ulcerative colitis", "sample_id": [ "GSM282928", "GSM282929", "GSM282930", "GSM282931", "GSM282932", "GSM282933", "GSM282934", "GSM282935", "GSM282936", "GSM282937", "GSM282938", "GSM282939", "GSM282940", "GSM282941", "GSM282942", "GSM282943", "GSM282944", "GSM282945", "GSM282946", "GSM282947", "GSM282948", "GSM282949", "GSM282950", "GSM282951", "GSM282952", "GSM282953", "GSM282954", "GSM282955", "GSM282956", "GSM282957", "GSM282958", "GSM282959", "GSM282960", "GSM282961", "GSM282962", "GSM282963", "GSM282964", "GSM282965", "GSM282966", "GSM282967", "GSM282968", "GSM282969", "GSM282970", "GSM282971", "GSM282972", "GSM282973", "GSM282974", "GSM282975", "GSM282976", "GSM282977", "GSM282978", "GSM282979", "GSM282980", "GSM282981", "GSM282982", "GSM282983", "GSM282984", "GSM282985", "GSM282986", "GSM282987", "GSM282988", "GSM282989", "GSM282990", "GSM282991", "GSM282992", "GSM282993", "GSM282994", "GSM282995", "GSM282996", "GSM282997", "GSM282998", "GSM282999", "GSM283000", "GSM283001", "GSM283002", "GSM283003", "GSM283004", "GSM283005", "GSM283006", "GSM283007", "GSM283008", "GSM283009", "GSM283010", "GSM283011", "GSM283012", "GSM283013", "GSM283014", "GSM283015", "GSM283016", "GSM283017", "GSM283018", "GSM283019", "GSM283020", "GSM283021", "GSM283022", "GSM283023", "GSM283024", "GSM283025", "GSM283026", "GSM283027", "GSM283028", "GSM283029", "GSM283030", "GSM283031", "GSM283032", "GSM283033", "GSM283034", "GSM283035", "GSM283036", "GSM283037", "GSM283038", "GSM283039", "GSM283040", "GSM283041", "GSM283042", "GSM283043", "GSM283044", "GSM283045", "GSM283046", "GSM283047", "GSM283048", "GSM283049", "GSM283050", "GSM283051", "GSM283052", "GSM283053", "GSM283054", "GSM283055", "GSM283056" ], "type": "disease state", "id": "GDS3268_2" }, { "dataset_id": "GDS3268", "description": "uninflamed", "sample_id": [ "GSM282855", "GSM282856", "GSM282857", "GSM282858", "GSM282859", "GSM282860", "GSM282861", "GSM282862", "GSM282863", "GSM282864", "GSM282865", "GSM282866", "GSM282867", "GSM282868", "GSM282869", "GSM282870", "GSM282871", "GSM282872", "GSM282873", "GSM282874", "GSM282875", "GSM282876", "GSM282877", "GSM282878", "GSM282879", "GSM282880", "GSM282881", "GSM282882", "GSM282883", "GSM282884", "GSM282885", "GSM282886", "GSM282887", "GSM282888", "GSM282889", "GSM282890", "GSM282891", "GSM282892", "GSM282893", "GSM282894", "GSM282895", "GSM282896", "GSM282897", "GSM282898", "GSM282899", "GSM282900", "GSM282901", "GSM282902", "GSM282903", "GSM282904", "GSM282905", "GSM282906", "GSM282907", "GSM282908", "GSM282909", "GSM282910", "GSM282911", "GSM282912", "GSM282913", "GSM282914", "GSM282915", "GSM282916", "GSM282918", "GSM282919", "GSM282920", "GSM282921", "GSM282923", "GSM282924", "GSM282927", "GSM282931", "GSM282935", "GSM282938", "GSM282939", "GSM282940", "GSM282941", "GSM282943", "GSM282944", "GSM282946", "GSM282947", "GSM282948", "GSM282949", "GSM282950", "GSM282951", "GSM282952", "GSM282953", "GSM282955", "GSM282956", "GSM282957", "GSM282958", "GSM282959", "GSM282960", "GSM282962", "GSM282963", "GSM282966", "GSM282968", "GSM282971", "GSM282974", "GSM282977", "GSM282978", "GSM282981", "GSM282983", "GSM282985", "GSM282987", "GSM282988", "GSM282989", "GSM282990", "GSM282991", "GSM282992", "GSM282993", "GSM282994", "GSM282995", "GSM283000", "GSM283001", "GSM283002", "GSM283003", "GSM283004", "GSM283005", "GSM283006", "GSM283007", "GSM283008", "GSM283009", "GSM283010", "GSM283011", "GSM283015", "GSM283016", "GSM283020", "GSM283021", "GSM283022", "GSM283023", "GSM283024", "GSM283034", "GSM283041", "GSM283043", "GSM283049", "GSM283051" ], "type": "other", "id": "GDS3268_3" }, { "dataset_id": "GDS3268", "description": "inflamed", "sample_id": [ "GSM282917", "GSM282922", "GSM282925", "GSM282926", "GSM282928", "GSM282929", "GSM282930", "GSM282932", "GSM282933", "GSM282934", "GSM282936", "GSM282937", "GSM282942", "GSM282945", "GSM282954", "GSM282961", "GSM282964", "GSM282965", "GSM282967", "GSM282969", "GSM282970", "GSM282972", "GSM282973", "GSM282975", "GSM282976", "GSM282979", "GSM282980", "GSM282982", "GSM282984", "GSM282986", "GSM282996", "GSM282997", "GSM282998", "GSM282999", "GSM283012", "GSM283013", "GSM283014", "GSM283017", "GSM283018", "GSM283019", "GSM283025", "GSM283026", "GSM283027", "GSM283028", "GSM283029", "GSM283030", "GSM283031", "GSM283032", "GSM283033", "GSM283035", "GSM283036", "GSM283037", "GSM283038", "GSM283039", "GSM283040", "GSM283042", "GSM283044", "GSM283045", "GSM283046", "GSM283047", "GSM283048", "GSM283050", "GSM283052", "GSM283053", "GSM283054", "GSM283055", "GSM283056" ], "type": "other", "id": "GDS3268_4" }, { "dataset_id": "GDS3268", "description": "sigmoid colon", "sample_id": [ "GSM282855", "GSM282856", "GSM282857", "GSM282858", "GSM282859", "GSM282860", "GSM282861", "GSM282862", "GSM282863", "GSM282864", "GSM282865", "GSM282866", "GSM282867", "GSM282868", "GSM282869", "GSM282870", "GSM282871", "GSM282872", "GSM282904", "GSM282910", "GSM282913", "GSM282915", "GSM282917", "GSM282921", "GSM282922", "GSM282926", "GSM282927", "GSM282929", "GSM282933", "GSM282935", "GSM282936", "GSM282937", "GSM282938", "GSM282940", "GSM282941", "GSM282942", "GSM282943", "GSM282944", "GSM282945", "GSM282946", "GSM282947", "GSM282948", "GSM282949", "GSM282950", "GSM282951", "GSM282952", "GSM282953", "GSM282954", "GSM282955", "GSM282956", "GSM282959", "GSM282961", "GSM282964", "GSM282965", "GSM282966", "GSM282967", "GSM282968", "GSM282969", "GSM282970", "GSM282972", "GSM282973", "GSM282974", "GSM282975", "GSM282996", "GSM282999", "GSM283014", "GSM283016", "GSM283019", "GSM283021", "GSM283024", "GSM283026", "GSM283029", "GSM283030", "GSM283033", "GSM283035", "GSM283036", "GSM283038", "GSM283041", "GSM283043", "GSM283046", "GSM283050", "GSM283053", "GSM283055", "GSM283056" ], "type": "tissue", "id": "GDS3268_5" }, { "dataset_id": "GDS3268", "description": "terminal ileum", "sample_id": [ "GSM282873", "GSM282874", "GSM282875", "GSM282905", "GSM282914", "GSM282918", "GSM282928", "GSM282957", "GSM282958", "GSM282960", "GSM282971", "GSM283015" ], "type": "tissue", "id": "GDS3268_6" }, { "dataset_id": "GDS3268", "description": "descending colon", "sample_id": [ "GSM282876", "GSM282877", "GSM282878", "GSM282879", "GSM282880", "GSM282881", "GSM282882", "GSM282883", "GSM282884", "GSM282885", "GSM282886", "GSM282887", "GSM282888", "GSM282889", "GSM282890", "GSM282902", "GSM282903", "GSM282907", "GSM282909", "GSM282912", "GSM282920", "GSM282924", "GSM282925", "GSM282930", "GSM282932", "GSM282934", "GSM282962", "GSM282963", "GSM282976", "GSM282977", "GSM282978", "GSM282979", "GSM282987", "GSM282988", "GSM282989", "GSM282990", "GSM282991", "GSM282992", "GSM282993", "GSM282994", "GSM282995", "GSM282998", "GSM283013", "GSM283017", "GSM283018", "GSM283020", "GSM283023", "GSM283025", "GSM283028", "GSM283032", "GSM283037", "GSM283040", "GSM283042", "GSM283045", "GSM283048", "GSM283052", "GSM283054" ], "type": "tissue", "id": "GDS3268_7" }, { "dataset_id": "GDS3268", "description": "ascending colon", "sample_id": [ "GSM282891", "GSM282892", "GSM282893", "GSM282894", "GSM282895", "GSM282896", "GSM282897", "GSM282898", "GSM282899", "GSM282900", "GSM282901", "GSM282906", "GSM282908", "GSM282911", "GSM282916", "GSM282919", "GSM282923", "GSM282931", "GSM282939", "GSM282980", "GSM282981", "GSM282982", "GSM282983", "GSM282984", "GSM282985", "GSM282986", "GSM282997", "GSM283000", "GSM283001", "GSM283002", "GSM283003", "GSM283004", "GSM283005", "GSM283006", "GSM283007", "GSM283008", "GSM283009", "GSM283010", "GSM283011", "GSM283012", "GSM283022", "GSM283027", "GSM283031", "GSM283034", "GSM283039", "GSM283044", "GSM283047", "GSM283049", "GSM283051" ], "type": "tissue", "id": "GDS3268_8" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS3268", "version": 1.0, "instances": "202", "variables": 30021, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3268.tab", "compression": "gz" } ], [ [ "GDS3274.tab" ], { "title": "Chromophobe renal cell carcinoma and oncocytoma", "description": "Comparison of chromophobe renal cell carcinoma (RCC) and benign oncocytoma tumor samples. Malignant chromophobe RCC and benign oncocytoma share morphologic features. Results provide insight into the molecular differences between the two types of tumors.", "type": "Expression profiling by array", "pubmed_id": "17145811", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE12090", "order": "none", "update_date": "Aug 06 2008", "subsets": [ { "dataset_id": "GDS3274", "description": "oncocytoma", "sample_id": [ "GSM305099", "GSM305100", "GSM305102", "GSM305107", "GSM305109", "GSM305110", "GSM305111", "GSM305112", "GSM305115" ], "type": "disease state", "id": "GDS3274_1" }, { "dataset_id": "GDS3274", "description": "chromophobe renal cell carcinoma", "sample_id": [ "GSM305101", "GSM305103", "GSM305104", "GSM305105", "GSM305106", "GSM305108", "GSM305113", "GSM305114", "GSM305116" ], "type": "disease state", "id": "GDS3274_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3274", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3274.tab", "compression": "gz" } ], [ [ "GDS3281.tab" ], { "title": "Tuberous sclerosis complex hamartomas", "description": "Analysis of tuberous sclerosis complex (TSC) skin hamartomas (angiofibromas and periungual fibromas) with normal-appearing skin from the same patients. Hamartomas overgrow epithelial and mesenchymal cells in TSC skin. Results provide insight into the pathogenesis of TSC hamartomas.", "type": "Expression profiling by array", "pubmed_id": "18292222", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE9715", "order": "none", "update_date": "Jan 05 2009", "subsets": [ { "dataset_id": "GDS3281", "description": "patient 2", "sample_id": [ "GSM245374", "GSM245375", "GSM245376" ], "type": "individual", "id": "GDS3281_1" }, { "dataset_id": "GDS3281", "description": "patient 4", "sample_id": [ "GSM245377", "GSM245378", "GSM245379" ], "type": "individual", "id": "GDS3281_2" }, { "dataset_id": "GDS3281", "description": "patient 10", "sample_id": [ "GSM245380", "GSM245381", "GSM245382" ], "type": "individual", "id": "GDS3281_3" }, { "dataset_id": "GDS3281", "description": "patient 12", "sample_id": [ "GSM245372", "GSM245373" ], "type": "individual", "id": "GDS3281_4" }, { "dataset_id": "GDS3281", "description": "normal", "sample_id": [ "GSM245372", "GSM245374", "GSM245377", "GSM245380" ], "type": "disease state", "id": "GDS3281_5" }, { "dataset_id": "GDS3281", "description": "tumor", "sample_id": [ "GSM245373", "GSM245375", "GSM245376", "GSM245378", "GSM245379", "GSM245381", "GSM245382" ], "type": "disease state", "id": "GDS3281_6" }, { "dataset_id": "GDS3281", "description": "normal fibroblasts", "sample_id": [ "GSM245372", "GSM245374", "GSM245377", "GSM245380" ], "type": "cell type", "id": "GDS3281_7" }, { "dataset_id": "GDS3281", "description": "facial angiofibroma fibroblasts", "sample_id": [ "GSM245373", "GSM245375", "GSM245378", "GSM245381" ], "type": "cell type", "id": "GDS3281_8" }, { "dataset_id": "GDS3281", "description": "periungual fibroma fibroblasts", "sample_id": [ "GSM245376", "GSM245379", "GSM245382" ], "type": "cell type", "id": "GDS3281_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3281", "version": 1.0, "instances": "11", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3281.tab", "compression": "gz" } ], [ [ "GDS3282.tab" ], { "title": "Liver transplantation tolerance: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells from operationally tolerant liver transplant patients. Operationally tolerant patients are fully immunocompetent but accept grafts without chronic immunosuppression. Results identify a molecular signature for operational tolerance.", "type": "Expression profiling by array", "pubmed_id": "17241111", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE11881", "order": "none", "update_date": "Aug 06 2008", "subsets": [ { "dataset_id": "GDS3282", "description": "non-tolerant", "sample_id": [ "GSM124575", "GSM124675", "GSM124748", "GSM124833", "GSM124838", "GSM124840", "GSM124842", "GSM124863" ], "type": "specimen", "id": "GDS3282_1" }, { "dataset_id": "GDS3282", "description": "tolerant", "sample_id": [ "GSM124646", "GSM124648", "GSM124753", "GSM124834", "GSM124836", "GSM124845", "GSM124850", "GSM124851", "GSM124853" ], "type": "specimen", "id": "GDS3282_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3282", "version": 1.0, "instances": "17", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3282.tab", "compression": "gz" } ], [ [ "GDS3283.tab" ], { "title": "Estradiol effect on breast cancer cell line: time course", "description": "Analysis of MCF-7 breast cancer cells treated with estradiol for 3 or 6 hours. Results combined with ChIP experiments to identify estrogen receptor alpha binding sites and estradiol target genes in breast cancer cells.", "type": "Expression profiling by array", "pubmed_id": "17510434", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE11506", "order": "none", "update_date": "Aug 06 2008", "subsets": [ { "dataset_id": "GDS3283", "description": "control", "sample_id": [ "GSM289651", "GSM289652", "GSM289653" ], "type": "agent", "id": "GDS3283_1" }, { "dataset_id": "GDS3283", "description": "estradiol", "sample_id": [ "GSM289654", "GSM289655", "GSM289656", "GSM289657", "GSM289658", "GSM289659" ], "type": "agent", "id": "GDS3283_2" }, { "dataset_id": "GDS3283", "description": "3 h", "sample_id": [ "GSM289651", "GSM289652", "GSM289653", "GSM289654", "GSM289655", "GSM289656" ], "type": "time", "id": "GDS3283_3" }, { "dataset_id": "GDS3283", "description": "6 h", "sample_id": [ "GSM289657", "GSM289658", "GSM289659" ], "type": "time", "id": "GDS3283_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3283", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3283.tab", "compression": "gz" } ], [ [ "GDS3284.tab" ], { "title": "Antimalarial drug chloroquine effect on PfCRT mutant parasite lines", "description": "Analysis of Plasmodium falciparum chloroquine-resistant transporter (PfCRT) mutants exposed to a low dose of chloroquine (CQ) for 3 h. The clones have different degrees of CQ resistance (CQR). Results provide insight into the molecular basis of the PfCRT effect on parasite susceptibility to CQ.", "type": "Expression profiling by array", "pubmed_id": "18575593", "platform": "GPL1321", "platform_organism": [ "Plasmodium falciparum", "Anopheles gambiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "22769", "sample_organism": "Plasmodium falciparum", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE10022", "order": "none", "update_date": "Jan 06 2009", "subsets": [ { "dataset_id": "GDS3284", "description": "106/1(K76) parent line", "sample_id": [ "GSM253220", "GSM253221", "GSM253222", "GSM253223", "GSM253224", "GSM253225" ], "type": "genotype/variation", "id": "GDS3284_1" }, { "dataset_id": "GDS3284", "description": "106/1(76I) mutant", "sample_id": [ "GSM253226", "GSM253227", "GSM253228", "GSM253229", "GSM253230", "GSM253231" ], "type": "genotype/variation", "id": "GDS3284_2" }, { "dataset_id": "GDS3284", "description": "106/1(76l-352K) mutant", "sample_id": [ "GSM253232", "GSM253233", "GSM253234", "GSM253235", "GSM253236", "GSM253237" ], "type": "genotype/variation", "id": "GDS3284_3" }, { "dataset_id": "GDS3284", "description": "control", "sample_id": [ "GSM253220", "GSM253221", "GSM253222", "GSM253226", "GSM253227", "GSM253228", "GSM253232", "GSM253233", "GSM253234" ], "type": "agent", "id": "GDS3284_4" }, { "dataset_id": "GDS3284", "description": "chloroquine", "sample_id": [ "GSM253223", "GSM253224", "GSM253225", "GSM253229", "GSM253230", "GSM253231", "GSM253235", "GSM253236", "GSM253237" ], "type": "agent", "id": "GDS3284_5" } ], "taxid": "5833", "genes": 18964, "aggregation_function": "mean", "name": "GDS3284", "version": 1.0, "instances": "18", "variables": 18967, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3284.tab", "compression": "gz" } ], [ [ "GDS3285.tab" ], { "title": "Estrogen effect on breast cancer cell line: time course", "description": "Analysis of MCF-7 breast cancer cells treated with estrogen for up to 12 hours. Results used in conjunction with estrogen receptor and RNA polymerase II binding data to provide insight into the mechanisms underlying estrogen-regulated gene expression in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "17013392", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE11324", "order": "none", "update_date": "Aug 06 2008", "subsets": [ { "dataset_id": "GDS3285", "description": "0 h", "sample_id": [ "GSM286031", "GSM286032", "GSM286033" ], "type": "time", "id": "GDS3285_1" }, { "dataset_id": "GDS3285", "description": "3 h", "sample_id": [ "GSM286034", "GSM286035", "GSM286036" ], "type": "time", "id": "GDS3285_2" }, { "dataset_id": "GDS3285", "description": "6 h", "sample_id": [ "GSM286037", "GSM286038", "GSM286039" ], "type": "time", "id": "GDS3285_3" }, { "dataset_id": "GDS3285", "description": "12 h", "sample_id": [ "GSM286040", "GSM286041", "GSM286042" ], "type": "time", "id": "GDS3285_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3285", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3285.tab", "compression": "gz" } ], [ [ "GDS3287.tab" ], { "title": "Fibroblast pseudopodia response to lysophosphatidic acid", "description": "Analysis of pseudopodia from NIH/3T3 cells extending protrusions in response to LPA, a chemotactic stimulus. Asymmetric distribution of RNAs establishes polarity in multiple cell types. Results provide insight into RNAs that localize in cell protrusions in response to migratory stimuli.", "type": "Expression profiling by array", "pubmed_id": "18451862", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10226", "order": "none", "update_date": "Aug 08 2008", "subsets": [ { "dataset_id": "GDS3287", "description": "pseudopodia", "sample_id": [ "GSM258086", "GSM258088" ], "type": "other", "id": "GDS3287_1" }, { "dataset_id": "GDS3287", "description": "cell bodies", "sample_id": [ "GSM258087", "GSM258089" ], "type": "other", "id": "GDS3287_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3287", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3287.tab", "compression": "gz" } ], [ [ "GDS3288.tab" ], { "title": "Fibroblast pseudopodia response to fibronectin", "description": "Analysis of pseudopodia from NIH/3T3 cells extending protrusions in response to fibronectin, a haptotactic stimulus. Asymmetric distribution of RNAs establishes polarity in multiple cell types. Results provide insight into RNAs that localize in cell protrusions in response to migratory stimuli.", "type": "Expression profiling by array", "pubmed_id": "18451862", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10227", "order": "none", "update_date": "Aug 08 2008", "subsets": [ { "dataset_id": "GDS3288", "description": "pseudopodia", "sample_id": [ "GSM258090", "GSM258092" ], "type": "other", "id": "GDS3288_1" }, { "dataset_id": "GDS3288", "description": "cell bodies", "sample_id": [ "GSM258091", "GSM258093" ], "type": "other", "id": "GDS3288_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3288", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3288.tab", "compression": "gz" } ], [ [ "GDS3289.tab" ], { "title": "Prostate cancer progression at the cellular level", "description": "Analysis of LCM-captured epithelial cell populations representing prostate cancer progression from benign epithelium to metastatic disease. Stromal cell populations also examined. Results provide insight into molecular mechanisms underlying the different aspects of prostate cancer progression.", "type": "Expression profiling by array", "pubmed_id": "17173048", "platform": "GPL2013", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20000", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "104", "value_type": "log2 ratio", "reference_series": "GSE6099", "order": "none", "update_date": "Aug 15 2008", "subsets": [ { "dataset_id": "GDS3289", "description": "epithelial", "sample_id": [ "GSM141184", "GSM141185", "GSM141186", "GSM141259", "GSM141260", "GSM141262", "GSM141263", "GSM141243", "GSM141261", "GSM141244", "GSM141246", "GSM141247", "GSM141248", "GSM141249", "GSM141258", "GSM141264", "GSM141266", "GSM141265", "GSM141267", "GSM141330", "GSM141334", "GSM141335", "GSM141336", "GSM141337", "GSM141338", "GSM141339", "GSM141340", "GSM141341", "GSM141342", "GSM141343", "GSM141356", "GSM141366", "GSM141367", "GSM141368", "GSM141369", "GSM141370", "GSM141371", "GSM141372", "GSM141357", "GSM141358", "GSM141359", "GSM141360", "GSM141361", "GSM141362", "GSM141363", "GSM141364", "GSM141365", "GSM141373", "GSM141382", "GSM141383", "GSM141384", "GSM141385", "GSM141386", "GSM141387", "GSM141388", "GSM141389", "GSM141390", "GSM141391", "GSM141392", "GSM141374", "GSM141393", "GSM141394", "GSM141395", "GSM141396", "GSM141397", "GSM141398", "GSM141399", "GSM141400", "GSM141401", "GSM141402", "GSM141375", "GSM141403", "GSM141404", "GSM141376", "GSM141377", "GSM141378", "GSM141379", "GSM141380", "GSM141381", "GSM141405", "GSM141413", "GSM141415", "GSM141416", "GSM141417", "GSM141406", "GSM141407", "GSM141408", "GSM141409", "GSM141410", "GSM141411", "GSM141412", "GSM141414" ], "type": "cell type", "id": "GDS3289_1" }, { "dataset_id": "GDS3289", "description": "stromal", "sample_id": [ "GSM141418", "GSM141419", "GSM141420", "GSM141421", "GSM141427", "GSM141422", "GSM141423", "GSM141424", "GSM141428", "GSM141426", "GSM141425", "GSM141429" ], "type": "cell type", "id": "GDS3289_2" }, { "dataset_id": "GDS3289", "description": "benign", "sample_id": [ "GSM141184", "GSM141185", "GSM141186", "GSM141259", "GSM141260", "GSM141262", "GSM141263", "GSM141243", "GSM141261", "GSM141244", "GSM141246", "GSM141247", "GSM141248", "GSM141249", "GSM141258", "GSM141334", "GSM141335", "GSM141336", "GSM141337", "GSM141338", "GSM141339", "GSM141340", "GSM141418", "GSM141419", "GSM141420", "GSM141421", "GSM141427", "GSM141422", "GSM141423", "GSM141424", "GSM141428", "GSM141426", "GSM141425", "GSM141429" ], "type": "disease state", "id": "GDS3289_3" }, { "dataset_id": "GDS3289", "description": "atrophic lesion (ATR)_proliferative inflammatory atrophy (PIA)", "sample_id": [ "GSM141265", "GSM141267", "GSM141330" ], "type": "disease state", "id": "GDS3289_4" }, { "dataset_id": "GDS3289", "description": "atrophic lesion (ATR)", "sample_id": [ "GSM141264", "GSM141266" ], "type": "disease state", "id": "GDS3289_5" }, { "dataset_id": "GDS3289", "description": "metastatic prostate cancer (MET)", "sample_id": [ "GSM141341", "GSM141342", "GSM141343", "GSM141356", "GSM141366", "GSM141367", "GSM141368", "GSM141369", "GSM141370", "GSM141371", "GSM141372", "GSM141357", "GSM141358", "GSM141359", "GSM141360", "GSM141361", "GSM141362", "GSM141363", "GSM141364", "GSM141365" ], "type": "disease state", "id": "GDS3289_6" }, { "dataset_id": "GDS3289", "description": "localized prostate cancer (PCA)", "sample_id": [ "GSM141373", "GSM141382", "GSM141383", "GSM141384", "GSM141385", "GSM141386", "GSM141387", "GSM141388", "GSM141389", "GSM141390", "GSM141391", "GSM141392", "GSM141374", "GSM141393", "GSM141394", "GSM141395", "GSM141396", "GSM141397", "GSM141398", "GSM141399", "GSM141400", "GSM141401", "GSM141402", "GSM141375", "GSM141403", "GSM141404", "GSM141376", "GSM141377", "GSM141378", "GSM141379", "GSM141380", "GSM141381" ], "type": "disease state", "id": "GDS3289_7" }, { "dataset_id": "GDS3289", "description": "prostatic intraepithelial neoplasia (PIN)", "sample_id": [ "GSM141405", "GSM141413", "GSM141415", "GSM141416", "GSM141417", "GSM141406", "GSM141407", "GSM141408", "GSM141409", "GSM141410", "GSM141411", "GSM141412", "GSM141414" ], "type": "disease state", "id": "GDS3289_8" }, { "dataset_id": "GDS3289", "description": "hormone-naive (HN)", "sample_id": [ "GSM141341", "GSM141342", "GSM141343" ], "type": "other", "id": "GDS3289_9" }, { "dataset_id": "GDS3289", "description": "hormone-refractory (HR)", "sample_id": [ "GSM141356", "GSM141366", "GSM141367", "GSM141368", "GSM141369", "GSM141370", "GSM141371", "GSM141372", "GSM141357", "GSM141358", "GSM141359", "GSM141360", "GSM141361", "GSM141362", "GSM141363", "GSM141364", "GSM141365" ], "type": "other", "id": "GDS3289_10" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 3", "sample_id": [ "GSM141373", "GSM141387", "GSM141374", "GSM141395", "GSM141397", "GSM141398", "GSM141401", "GSM141375", "GSM141376", "GSM141377", "GSM141378", "GSM141380" ], "type": "other", "id": "GDS3289_11" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 3+4", "sample_id": [ "GSM141399" ], "type": "other", "id": "GDS3289_12" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 4", "sample_id": [ "GSM141383", "GSM141384", "GSM141385", "GSM141388", "GSM141389", "GSM141391", "GSM141394", "GSM141396", "GSM141403", "GSM141404", "GSM141379", "GSM141381" ], "type": "other", "id": "GDS3289_13" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 4+3 w/ 5", "sample_id": [ "GSM141386" ], "type": "other", "id": "GDS3289_14" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 4+5", "sample_id": [ "GSM141382", "GSM141390", "GSM141393", "GSM141400", "GSM141402" ], "type": "other", "id": "GDS3289_15" }, { "dataset_id": "GDS3289", "description": "LCM Gleason pattern 5+4", "sample_id": [ "GSM141392" ], "type": "other", "id": "GDS3289_16" }, { "dataset_id": "GDS3289", "description": "nodules of benign prostatic hyperplasia (BPH)", "sample_id": [ "GSM141334", "GSM141335", "GSM141336", "GSM141337", "GSM141420", "GSM141421", "GSM141427", "GSM141422", "GSM141423", "GSM141424", "GSM141428" ], "type": "other", "id": "GDS3289_17" }, { "dataset_id": "GDS3289", "description": "normal adjacent to prostate cancer foci (ADJ)", "sample_id": [ "GSM141184", "GSM141185", "GSM141186", "GSM141259", "GSM141260", "GSM141262", "GSM141263", "GSM141243", "GSM141261", "GSM141244", "GSM141246", "GSM141247", "GSM141248", "GSM141249", "GSM141258", "GSM141418", "GSM141419" ], "type": "other", "id": "GDS3289_18" }, { "dataset_id": "GDS3289", "description": "normal organ donor (NOR)", "sample_id": [ "GSM141338", "GSM141339", "GSM141340", "GSM141426", "GSM141425", "GSM141429" ], "type": "other", "id": "GDS3289_19" }, { "dataset_id": "GDS3289", "description": "putative precursor lesion", "sample_id": [ "GSM141265", "GSM141267", "GSM141330", "GSM141405", "GSM141413", "GSM141415", "GSM141416", "GSM141417", "GSM141406", "GSM141407", "GSM141408", "GSM141409", "GSM141410", "GSM141411", "GSM141412", "GSM141414" ], "type": "other", "id": "GDS3289_20" }, { "dataset_id": "GDS3289", "description": "simple atrophy", "sample_id": [ "GSM141266" ], "type": "other", "id": "GDS3289_21" }, { "dataset_id": "GDS3289", "description": "simple cystic atrophy", "sample_id": [ "GSM141264" ], "type": "other", "id": "GDS3289_22" } ], "taxid": "9606", "genes": 15600, "aggregation_function": "mean", "name": "GDS3289", "version": 1.0, "instances": "104", "variables": 15604, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3289.tab", "compression": "gz" } ], [ [ "GDS3290.tab" ], { "title": "Interleukin-6 effect on skeletal muscle tissue: time course", "description": "Analysis of interleukin-6 (IL-6) infused skeletal muscle (SKM) biopsies at time points up to 6hr. IL-6, a cytokine secreted from skeletal muscle during exercise, works in both an autocrine and paracrine manner. Results provide insight into IL-6-induced expression of other secreted factors in SKM.", "type": "Expression profiling by array", "pubmed_id": "18511485", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE10685", "order": "none", "update_date": "Jan 06 2009", "subsets": [ { "dataset_id": "GDS3290", "description": "CO", "sample_id": [ "GSM269808", "GSM269809", "GSM269810" ], "type": "individual", "id": "GDS3290_1" }, { "dataset_id": "GDS3290", "description": "DP", "sample_id": [ "GSM269811", "GSM269834", "GSM269835" ], "type": "individual", "id": "GDS3290_2" }, { "dataset_id": "GDS3290", "description": "HH", "sample_id": [ "GSM269932", "GSM269933", "GSM269934" ], "type": "individual", "id": "GDS3290_3" }, { "dataset_id": "GDS3290", "description": "0 h", "sample_id": [ "GSM269808", "GSM269811", "GSM269932" ], "type": "time", "id": "GDS3290_4" }, { "dataset_id": "GDS3290", "description": "3 h", "sample_id": [ "GSM269809", "GSM269834", "GSM269933" ], "type": "time", "id": "GDS3290_5" }, { "dataset_id": "GDS3290", "description": "6 h", "sample_id": [ "GSM269810", "GSM269835", "GSM269934" ], "type": "time", "id": "GDS3290_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3290", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3290.tab", "compression": "gz" } ], [ [ "GDS3291.tab" ], { "title": "Myelomonocytic lymphoma U937 cell line response to mild hyperthermia", "description": "Analysis of myelomonocytic lymphoma U937 cells subjected to mild hyperthermia. Mild hyperthermia alone does not induce apoptosis but it does show a synergism with radiotherapy and anti-cancer drugs. Results provide insight into molecular mechanisms underlying cellular responses to mild hyperthermia.", "type": "Expression profiling by array", "pubmed_id": "18608577", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10043", "order": "none", "update_date": "Feb 26 2009", "subsets": [ { "dataset_id": "GDS3291", "description": "control", "sample_id": [ "GSM253743", "GSM253744" ], "type": "protocol", "id": "GDS3291_1" }, { "dataset_id": "GDS3291", "description": "mild hyperthermia", "sample_id": [ "GSM253745", "GSM253746" ], "type": "protocol", "id": "GDS3291_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3291", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3291.tab", "compression": "gz" } ], [ [ "GDS3292.tab" ], { "title": "Preinvasive and invasive cervical squamous cell carcinomas", "description": "Analysis of LCM-harvested high-grade squamous intraepithelial lesions (HSIL) and invasive squamous cell carcinomas (SCC) from cervices. If left untreated, a subset of the HSILs will progress to SCCs. Results provide insight into the molecular mechanisms underlying cervical cancer progression.", "type": "Expression profiling by array", "pubmed_id": "17974957", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE7803", "order": "none", "update_date": "Mar 05 2009", "subsets": [ { "dataset_id": "GDS3292", "description": "normal", "sample_id": [ "GSM189384", "GSM189385", "GSM189386", "GSM189387", "GSM189388", "GSM189389", "GSM189390", "GSM189391", "GSM189392", "GSM189393" ], "type": "disease state", "id": "GDS3292_1" }, { "dataset_id": "GDS3292", "description": "high-grade squamous intraepithelial lesion", "sample_id": [ "GSM189394", "GSM189395", "GSM189396", "GSM189397", "GSM189398", "GSM189399", "GSM189400" ], "type": "disease state", "id": "GDS3292_2" }, { "dataset_id": "GDS3292", "description": "invasive squamous cell carcinoma", "sample_id": [ "GSM189401", "GSM189402", "GSM189403", "GSM189404", "GSM189405", "GSM189406", "GSM189407", "GSM189408", "GSM189409", "GSM189410", "GSM189411", "GSM189412", "GSM189413", "GSM189414", "GSM189415", "GSM189416", "GSM189417", "GSM189418", "GSM189419", "GSM189420", "GSM189421" ], "type": "disease state", "id": "GDS3292_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3292", "version": 1.0, "instances": "38", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3292.tab", "compression": "gz" } ], [ [ "GDS3293.tab" ], { "title": "Calcium-signaling effects on blastocyts", "description": "Analysis of blastocysts receiving reduced (CFW) or excess (20-p) Ca2+ signalling events. Results provide insight into the molecular mechanisms underlying the differential effect of the CFW and 20-p treatments on the ability of blastocysts to implant or develop post-implantation.", "type": "Expression profiling by array", "pubmed_id": "16996050", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE11687", "order": "none", "update_date": "Feb 26 2009", "subsets": [ { "dataset_id": "GDS3293", "description": "control", "sample_id": [ "GSM296814", "GSM296815", "GSM296816", "GSM296817" ], "type": "protocol", "id": "GDS3293_1" }, { "dataset_id": "GDS3293", "description": "20 calcium ion pulses (20-p)", "sample_id": [ "GSM296818", "GSM296819", "GSM296820", "GSM296821" ], "type": "protocol", "id": "GDS3293_2" }, { "dataset_id": "GDS3293", "description": "calcium-free wash (CFW)", "sample_id": [ "GSM296822", "GSM296823", "GSM296824", "GSM296825" ], "type": "protocol", "id": "GDS3293_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3293", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3293.tab", "compression": "gz" } ], [ [ "GDS3294.tab" ], { "title": "CTCF depletion effect in oocytes", "description": "Analysis of germinal vesicle (GV) oocytes depleted for maternal stores of CTCF by RNA interference (RNAi). Depletion of CTCF, an 11 zinc-finger DNA-binding protein, causes meiotic defects in the egg. Results provide insight into the molecular basis of this observation.", "type": "Expression profiling by array", "pubmed_id": "18614575", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE11664", "order": "none", "update_date": "Mar 02 2009", "subsets": [ { "dataset_id": "GDS3294", "description": "wild type", "sample_id": [ "GSM296254", "GSM296255", "GSM296256", "GSM296257", "GSM296259" ], "type": "genotype/variation", "id": "GDS3294_1" }, { "dataset_id": "GDS3294", "description": "CTCF-depleted", "sample_id": [ "GSM296250", "GSM296251", "GSM296252", "GSM296253", "GSM296261" ], "type": "genotype/variation", "id": "GDS3294_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3294", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3294.tab", "compression": "gz" } ], [ [ "GDS3295.tab" ], { "title": "Age-associated aneuploidy model", "description": "Analysis of germinal vesicle (GV)-intact oocytes and metaphase II (MII) eggs obtained from young and old females. An increased incidence of aneuploidy is observed with increasing maternal age. Results provide insight into the molecular basis underlying the age-associated increase in aneuploidy.", "type": "Expression profiling by array", "pubmed_id": "18342300", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE11667", "order": "none", "update_date": "May 14 2015", "subsets": [ { "dataset_id": "GDS3295", "description": "GV oocyte", "sample_id": [ "GSM296394", "GSM296395", "GSM296396", "GSM296398", "GSM296399", "GSM296400", "GSM296401", "GSM296402" ], "type": "development stage", "id": "GDS3295_1" }, { "dataset_id": "GDS3295", "description": "MII oocyte/egg", "sample_id": [ "GSM296403", "GSM296404", "GSM296405", "GSM296406", "GSM296408", "GSM296409", "GSM296410", "GSM296411" ], "type": "development stage", "id": "GDS3295_2" }, { "dataset_id": "GDS3295", "description": "6 weeks", "sample_id": [ "GSM296399", "GSM296400", "GSM296401", "GSM296402", "GSM296408", "GSM296409", "GSM296410", "GSM296411" ], "type": "age", "id": "GDS3295_3" }, { "dataset_id": "GDS3295", "description": "66 weeks", "sample_id": [ "GSM296394", "GSM296395", "GSM296396", "GSM296398", "GSM296403", "GSM296404", "GSM296405", "GSM296406" ], "type": "age", "id": "GDS3295_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3295", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3295.tab", "compression": "gz" } ], [ [ "GDS3297.tab" ], { "title": "Stage III serous ovarian adenocarcinomas", "description": "Analysis of stage III ovarian serous papillary adenocarcinomas from 5-year survivors and deceased patients. Ovarian carcinoma is often not detected until an advanced stage. Results provide insight into gene expression patterns associated with survival that could have prognostic relevance.", "type": "Expression profiling by array", "pubmed_id": "16996261", "platform": "GPL5886", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "30000", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "54", "value_type": "log2 ratio", "reference_series": "GSE12418", "order": "none", "update_date": "Mar 06 2009", "subsets": [ { "dataset_id": "GDS3297", "description": "5 yr survivor", "sample_id": [ "GSM311939", "GSM311940", "GSM311943", "GSM311944", "GSM311946", "GSM311953", "GSM311956", "GSM311963", "GSM311967", "GSM311968", "GSM311972", "GSM311973", "GSM311974", "GSM311975", "GSM311977", "GSM311980", "GSM311981", "GSM311982", "GSM311988", "GSM311990" ], "type": "individual", "id": "GDS3297_1" }, { "dataset_id": "GDS3297", "description": "deceased", "sample_id": [ "GSM311938", "GSM311941", "GSM311942", "GSM311945", "GSM311947", "GSM311948", "GSM311949", "GSM311950", "GSM311951", "GSM311952", "GSM311954", "GSM311955", "GSM311957", "GSM311958", "GSM311959", "GSM311960", "GSM311961", "GSM311962", "GSM311964", "GSM311965", "GSM311966", "GSM311969", "GSM311970", "GSM311971", "GSM311976", "GSM311978", "GSM311979", "GSM311983", "GSM311984", "GSM311985", "GSM311986", "GSM311987", "GSM311989", "GSM311991" ], "type": "individual", "id": "GDS3297_2" }, { "dataset_id": "GDS3297", "description": "stage IIIA", "sample_id": [ "GSM311939", "GSM311963", "GSM311973" ], "type": "disease state", "id": "GDS3297_3" }, { "dataset_id": "GDS3297", "description": "stage IIIB", "sample_id": [ "GSM311940", "GSM311953", "GSM311957", "GSM311960", "GSM311971", "GSM311974", "GSM311975", "GSM311976", "GSM311977", "GSM311978", "GSM311979", "GSM311982", "GSM311983", "GSM311986", "GSM311990", "GSM311991" ], "type": "disease state", "id": "GDS3297_4" }, { "dataset_id": "GDS3297", "description": "stage IIIC", "sample_id": [ "GSM311938", "GSM311941", "GSM311942", "GSM311943", "GSM311944", "GSM311945", "GSM311946", "GSM311947", "GSM311948", "GSM311949", "GSM311950", "GSM311951", "GSM311952", "GSM311954", "GSM311955", "GSM311956", "GSM311958", "GSM311959", "GSM311961", "GSM311962", "GSM311964", "GSM311965", "GSM311966", "GSM311967", "GSM311968", "GSM311969", "GSM311970", "GSM311972", "GSM311980", "GSM311981", "GSM311984", "GSM311985", "GSM311987", "GSM311988", "GSM311989" ], "type": "disease state", "id": "GDS3297_5" } ], "taxid": "9606", "genes": 24042, "aggregation_function": "mean", "name": "GDS3297", "version": 1.0, "instances": "54", "variables": 24045, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3297.tab", "compression": "gz" } ], [ [ "GDS3298.tab" ], { "title": "Peripheral blood monocyte response to Francisella tularensis infections", "description": "Analysis of blood monocytes infected with Francisella tularensis tularensis Schu S4 (virulent) or subsp. novicida (less virulent). F. tularensis causes the disease tularemia. Results provide insight into the molecular mechanisms that enable Francisella to dampen or subvert the host immune response.", "type": "Expression profiling by array", "pubmed_id": "18698339", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE12108", "order": "none", "update_date": "Mar 03 2009", "subsets": [ { "dataset_id": "GDS3298", "description": "untreated", "sample_id": [ "GSM305430", "GSM305432", "GSM305434", "GSM305436", "GSM305438", "GSM305440" ], "type": "infection", "id": "GDS3298_1" }, { "dataset_id": "GDS3298", "description": "F. tularensis subsp. novicida", "sample_id": [ "GSM305429", "GSM305431", "GSM305433", "GSM305435" ], "type": "infection", "id": "GDS3298_2" }, { "dataset_id": "GDS3298", "description": "F. tularensis subsp. tularensis Schu 4", "sample_id": [ "GSM305437", "GSM305439", "GSM305441", "GSM305442" ], "type": "infection", "id": "GDS3298_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3298", "version": 1.0, "instances": "14", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3298.tab", "compression": "gz" } ], [ [ "GDS33.tab" ], { "title": "Hypo-osmotic shock time course", "description": "Cells resuspended in YPD medium without sorbitol. Samples recovered at 5, 15, 30, 45 and 60 minutes. Included as part of a detailed characterization of global expression programs triggered by stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL56", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8448", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS33", "description": "5 minute", "sample_id": [ "GSM908" ], "type": "time", "id": "GDS33_1" }, { "dataset_id": "GDS33", "description": "15 minute", "sample_id": [ "GSM913" ], "type": "time", "id": "GDS33_2" }, { "dataset_id": "GDS33", "description": "30 minute", "sample_id": [ "GSM914" ], "type": "time", "id": "GDS33_3" }, { "dataset_id": "GDS33", "description": "45 minute", "sample_id": [ "GSM915" ], "type": "time", "id": "GDS33_4" }, { "dataset_id": "GDS33", "description": "60 minute", "sample_id": [ "GSM916" ], "type": "time", "id": "GDS33_5" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS33", "version": 1.0, "instances": "5", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS33.tab", "compression": "gz" } ], [ [ "GDS3300.tab" ], { "title": "SOX transcription factor overexpression in embryonic stem cells", "description": "Analysis of CA1 and CA2 embryonic stem cell (ESC) lines over-expressing transcription factor SOX7 or SOX17, producing extraembryonic endoderm and definitive endoderm progenitors, respectively. Results provide insight into the roles of SOX7 and SOX17 as regulators of endoderm differentiation in ESCs.", "type": "Expression profiling by array", "pubmed_id": "18682240", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10809", "order": "none", "update_date": "Mar 10 2009", "subsets": [ { "dataset_id": "GDS3300", "description": "SOX7 overexpression", "sample_id": [ "GSM272914", "GSM272916" ], "type": "protocol", "id": "GDS3300_1" }, { "dataset_id": "GDS3300", "description": "SOX17 overexpression", "sample_id": [ "GSM272918", "GSM272920" ], "type": "protocol", "id": "GDS3300_2" }, { "dataset_id": "GDS3300", "description": "control", "sample_id": [ "GSM272915", "GSM272917", "GSM272919", "GSM272921" ], "type": "protocol", "id": "GDS3300_3" }, { "dataset_id": "GDS3300", "description": "SOX7 O/E HESC", "sample_id": [ "GSM272914", "GSM272916" ], "type": "cell line", "id": "GDS3300_4" }, { "dataset_id": "GDS3300", "description": "SOX17 O/E HESC", "sample_id": [ "GSM272918", "GSM272920" ], "type": "cell line", "id": "GDS3300_5" }, { "dataset_id": "GDS3300", "description": "parental NoCre SOX7", "sample_id": [ "GSM272915", "GSM272917" ], "type": "cell line", "id": "GDS3300_6" }, { "dataset_id": "GDS3300", "description": "parental NoCre SOX17", "sample_id": [ "GSM272919", "GSM272921" ], "type": "cell line", "id": "GDS3300_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3300", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3300.tab", "compression": "gz" } ], [ [ "GDS3305.tab" ], { "title": "Long term storage and recovery of kidney HEK293 cells at ambient temperature", "description": "Analysis of HEK293 spheroids and monolayer controls subjected to dry storage for up to 6 weeks, followed by 0hr or 72hr recovery (rehydration). Results provide insight into molecular mechanisms underlying long term metabolic arrest and recovery of HEK293 spheroids.", "type": "Expression profiling by array", "pubmed_id": "16155929", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1364", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3305", "description": "2-D monolayer", "sample_id": [ "GSM22069", "GSM22070", "GSM22071", "GSM22057", "GSM22058", "GSM22059", "GSM22066", "GSM22067", "GSM22068" ], "type": "cell type", "id": "GDS3305_1" }, { "dataset_id": "GDS3305", "description": "3-D spheroid", "sample_id": [ "GSM22051", "GSM22052", "GSM22053", "GSM22054", "GSM22055", "GSM22056", "GSM22060", "GSM22061", "GSM22062", "GSM22063", "GSM22064", "GSM22065" ], "type": "cell type", "id": "GDS3305_2" }, { "dataset_id": "GDS3305", "description": "no dry storage", "sample_id": [ "GSM22051", "GSM22052", "GSM22053", "GSM22069", "GSM22070", "GSM22071", "GSM22066", "GSM22067", "GSM22068" ], "type": "stress", "id": "GDS3305_3" }, { "dataset_id": "GDS3305", "description": "2 wk dry storage", "sample_id": [ "GSM22054", "GSM22055", "GSM22056", "GSM22057", "GSM22058", "GSM22059" ], "type": "stress", "id": "GDS3305_4" }, { "dataset_id": "GDS3305", "description": "4 wk dry storage", "sample_id": [ "GSM22060", "GSM22061", "GSM22062" ], "type": "stress", "id": "GDS3305_5" }, { "dataset_id": "GDS3305", "description": "6 wk dry storage", "sample_id": [ "GSM22063", "GSM22064", "GSM22065" ], "type": "stress", "id": "GDS3305_6" }, { "dataset_id": "GDS3305", "description": "n/a", "sample_id": [ "GSM22051", "GSM22052", "GSM22053", "GSM22069", "GSM22070", "GSM22071", "GSM22066", "GSM22067", "GSM22068" ], "type": "time", "id": "GDS3305_7" }, { "dataset_id": "GDS3305", "description": "0 hr recovery", "sample_id": [ "GSM22054", "GSM22055", "GSM22056", "GSM22060", "GSM22061", "GSM22062", "GSM22063", "GSM22064", "GSM22065" ], "type": "time", "id": "GDS3305_8" }, { "dataset_id": "GDS3305", "description": "72 hr recovery", "sample_id": [ "GSM22057", "GSM22058", "GSM22059" ], "type": "time", "id": "GDS3305_9" }, { "dataset_id": "GDS3305", "description": "antibiotics", "sample_id": [ "GSM22066", "GSM22067", "GSM22068", "GSM22057", "GSM22058", "GSM22059" ], "type": "other", "id": "GDS3305_10" }, { "dataset_id": "GDS3305", "description": "no antibiotics", "sample_id": [ "GSM22069", "GSM22070", "GSM22071", "GSM22051", "GSM22052", "GSM22053", "GSM22054", "GSM22055", "GSM22056", "GSM22060", "GSM22061", "GSM22062", "GSM22063", "GSM22064", "GSM22065" ], "type": "other", "id": "GDS3305_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3305", "version": 1.0, "instances": "21", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3305.tab", "compression": "gz" } ], [ [ "GDS3306.tab" ], { "title": "Two week storage and recovery of kidney HEK293 cells at ambient temperature", "description": "Analysis of HEK293 spheroids and monolayer controls subjected to dry storage for up to 2 weeks, followed by 0hr to 72hr recovery. Results provide insight into molecular mechanisms underlying metabolic arrest and recovery of HEK293 spheroids.", "type": "Expression profiling by array", "pubmed_id": "16155929", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1455", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3306", "description": "2-D monolayer", "sample_id": [ "GSM24493", "GSM24494", "GSM24495" ], "type": "cell type", "id": "GDS3306_1" }, { "dataset_id": "GDS3306", "description": "3-D spheroid", "sample_id": [ "GSM24496", "GSM24497", "GSM24498", "GSM24499", "GSM24500", "GSM24501", "GSM24502", "GSM24503", "GSM24504", "GSM24505", "GSM24506", "GSM24507", "GSM24508", "GSM24509", "GSM24510" ], "type": "cell type", "id": "GDS3306_2" }, { "dataset_id": "GDS3306", "description": "no dry storage", "sample_id": [ "GSM24493", "GSM24494", "GSM24495", "GSM24496", "GSM24497", "GSM24498" ], "type": "stress", "id": "GDS3306_3" }, { "dataset_id": "GDS3306", "description": "2 wk dry storage", "sample_id": [ "GSM24499", "GSM24500", "GSM24501", "GSM24502", "GSM24503", "GSM24504", "GSM24505", "GSM24506", "GSM24507", "GSM24508", "GSM24509", "GSM24510" ], "type": "stress", "id": "GDS3306_4" }, { "dataset_id": "GDS3306", "description": "not applicable", "sample_id": [ "GSM24493", "GSM24494", "GSM24495", "GSM24496", "GSM24497", "GSM24498" ], "type": "time", "id": "GDS3306_5" }, { "dataset_id": "GDS3306", "description": "0 hr recovery", "sample_id": [ "GSM24499", "GSM24500", "GSM24501" ], "type": "time", "id": "GDS3306_6" }, { "dataset_id": "GDS3306", "description": "6 hr recovery", "sample_id": [ "GSM24502", "GSM24503", "GSM24504" ], "type": "time", "id": "GDS3306_7" }, { "dataset_id": "GDS3306", "description": "24 hr recovery", "sample_id": [ "GSM24505", "GSM24506", "GSM24507" ], "type": "time", "id": "GDS3306_8" }, { "dataset_id": "GDS3306", "description": "72 hr recovery", "sample_id": [ "GSM24508", "GSM24509", "GSM24510" ], "type": "time", "id": "GDS3306_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3306", "version": 1.0, "instances": "18", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3306.tab", "compression": "gz" } ], [ [ "GDS3308.tab" ], { "title": "Cytogenetically normal acute myeloid leukemia_training set (HG-U133B)", "description": "Analysis of mononuclear cells from bone marrow or peripheral blood from a training set of 163 adult patients with cytogenetically normal acute myeloid leukemia (CN-AML). Patients with CN-AML show heterogeneous treatment outcomes. Results provide insight into a prognostic gene signature for CN-AML.", "type": "Expression profiling by array", "pubmed_id": "18716133", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "163", "value_type": "transformed count", "reference_series": "GSE12417", "order": "none", "update_date": "Sep 08 2008", "subsets": [ { "dataset_id": "GDS3308", "description": "bone marrow", "sample_id": [ "GSM311761", "GSM311762", "GSM311763", "GSM311764", "GSM311765", "GSM311766", "GSM311767", "GSM311768", "GSM311769", "GSM311770", "GSM311771", "GSM311772", "GSM311773", "GSM311774", "GSM311775", "GSM311776", "GSM311777", "GSM311778", "GSM311779", "GSM311780", "GSM311781", "GSM311782", "GSM311783", "GSM311784", "GSM311785", "GSM311786", "GSM311787", "GSM311788", "GSM311789", "GSM311790", "GSM311791", "GSM311792", "GSM311793", "GSM311794", "GSM311795", "GSM311796", "GSM311797", "GSM311798", "GSM311799", "GSM311800", "GSM311801", "GSM311802", "GSM311803", "GSM311804", "GSM311805", "GSM311806", "GSM311807", "GSM311808", "GSM311809", "GSM311810", "GSM311811", "GSM311812", "GSM311813", "GSM311814", "GSM311815", "GSM311816", "GSM311817", "GSM311818", "GSM311819", "GSM311820", "GSM311821", "GSM311822", "GSM311823", "GSM311824", "GSM311825", "GSM311826", "GSM311827", "GSM311828", "GSM311829", "GSM311830", "GSM311832", "GSM311833", "GSM311834", "GSM311835", "GSM311836", "GSM311837", "GSM311838", "GSM311839", "GSM311840", "GSM311841", "GSM311842", "GSM311843", "GSM311844", "GSM311845", "GSM311846", "GSM311847", "GSM311848", "GSM311849", "GSM311850", "GSM311851", "GSM311852", "GSM311853", "GSM311854", "GSM311855", "GSM311856", "GSM311857", "GSM311858", "GSM311859", "GSM311860", "GSM311861", "GSM311862", "GSM311863", "GSM311864", "GSM311865", "GSM311866", "GSM311867", "GSM311868", "GSM311869", "GSM311870", "GSM311871", "GSM311872", "GSM311873", "GSM311874", "GSM311875", "GSM311876", "GSM311877", "GSM311879", "GSM311880", "GSM311881", "GSM311882", "GSM311883", "GSM311884", "GSM311885", "GSM311886", "GSM311887", "GSM311888", "GSM311889", "GSM311890", "GSM311891", "GSM311892", "GSM311893", "GSM311894", "GSM311895", "GSM311896", "GSM311897", "GSM311898", "GSM311899", "GSM311900", "GSM311901", "GSM311902", "GSM311903", "GSM311904", "GSM311905", "GSM311906", "GSM311907", "GSM311908", "GSM311909", "GSM311910", "GSM311911", "GSM311912", "GSM311913", "GSM311914", "GSM311915", "GSM311916", "GSM311917", "GSM311918", "GSM311919", "GSM311920", "GSM311921", "GSM311922", "GSM311923" ], "type": "tissue", "id": "GDS3308_1" }, { "dataset_id": "GDS3308", "description": "peripheral blood", "sample_id": [ "GSM311831", "GSM311878" ], "type": "tissue", "id": "GDS3308_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3308", "version": 1.0, "instances": "163", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3308.tab", "compression": "gz" } ], [ [ "GDS3309.tab" ], { "title": "Cigarette smoking effect on the nasal epithelium", "description": "Analysis of nasal epithelia from cigarette smokers. Cigarette smoke creates a field of injury in epithelial cells lining the respiratory tract. Results extend the concept of a smoking-induced field of injury beyond intrathoracic (bronchial) epithelia to extrathoracic epithelia that line the nose.", "type": "Expression profiling by array", "pubmed_id": "18513428", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE8987", "order": "none", "update_date": "Sep 10 2008", "subsets": [ { "dataset_id": "GDS3309", "description": "control", "sample_id": [ "GSM227868", "GSM227870", "GSM227871", "GSM227874", "GSM227876", "GSM227877", "GSM227878", "GSM227880" ], "type": "agent", "id": "GDS3309_1" }, { "dataset_id": "GDS3309", "description": "cigarette smoke", "sample_id": [ "GSM227869", "GSM227872", "GSM227873", "GSM227875", "GSM227879", "GSM227881", "GSM227882" ], "type": "agent", "id": "GDS3309_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3309", "version": 1.0, "instances": "15", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3309.tab", "compression": "gz" } ], [ [ "GDS3310.tab" ], { "title": "Human herpesvirus-8 infection of primary pulmonary microvascular cells", "description": "Analysis of pulmonary microvascular endothelial cells (HMVEC-L) infected with human herpesvirus-8 (HHV-8). HMVEC-L cells are relevant to the disease process of pulmonary arterial hypertension (PAH). Results provide insight into the role of HHV-8 in the pathogenesis of PAH.", "type": "Expression profiling by array", "pubmed_id": "18587055", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE6489", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3310", "description": "mock", "sample_id": [ "GSM148690", "GSM148691", "GSM148692" ], "type": "infection", "id": "GDS3310_1" }, { "dataset_id": "GDS3310", "description": "HHV-8", "sample_id": [ "GSM148687", "GSM148688", "GSM148689" ], "type": "infection", "id": "GDS3310_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3310", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3310.tab", "compression": "gz" } ], [ [ "GDS3311.tab" ], { "title": "Oxidative stress effect on ATF4 knockout embryonic neurons", "description": "Analysis of bZip transcription factor activating transcription factor 4 (ATF4)-deficient, embryonic neurons treated with homocysteate (HCA), a glutamate analog that induces oxidative stress. Results provide insight into the role of ATF4 in oxidative stress-induced cell death.", "type": "Expression profiling by array", "pubmed_id": "18458112", "platform": "GPL6100", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "23983", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE10470", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3311", "description": "wild-type", "sample_id": [ "GSM264760", "GSM264950", "GSM264951", "GSM264952", "GSM264958", "GSM264960", "GSM264962", "GSM264964", "GSM264965", "GSM264967", "GSM264970", "GSM264972" ], "type": "genotype/variation", "id": "GDS3311_1" }, { "dataset_id": "GDS3311", "description": "ATF4(-/-)", "sample_id": [ "GSM264953", "GSM264954", "GSM264955", "GSM264956", "GSM264957", "GSM264959", "GSM264961", "GSM264963", "GSM264966", "GSM264968", "GSM264971", "GSM264973" ], "type": "genotype/variation", "id": "GDS3311_2" }, { "dataset_id": "GDS3311", "description": "control", "sample_id": [ "GSM264760", "GSM264950", "GSM264951", "GSM264952", "GSM264953", "GSM264954", "GSM264955", "GSM264956", "GSM264957", "GSM264960", "GSM264961", "GSM264964", "GSM264965", "GSM264968", "GSM264970", "GSM264973" ], "type": "agent", "id": "GDS3311_3" }, { "dataset_id": "GDS3311", "description": "HCA", "sample_id": [ "GSM264958", "GSM264959", "GSM264962", "GSM264963", "GSM264966", "GSM264967", "GSM264971", "GSM264972" ], "type": "agent", "id": "GDS3311_4" } ], "taxid": "10090", "genes": 18790, "aggregation_function": "mean", "name": "GDS3311", "version": 1.0, "instances": "24", "variables": 18793, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3311.tab", "compression": "gz" } ], [ [ "GDS3312.tab" ], { "title": "Cytogenetically normal acute myeloid leukemia_training set (HG-U133A)", "description": "Analysis of mononuclear cells from bone marrow or peripheral blood from a training set of 163 adult patients with cytogenetically normal acute myeloid leukemia (CN-AML). Patients with CN-AML show heterogeneous treatment outcomes. Results provide insight into a prognostic gene signature for CN-AML.", "type": "Expression profiling by array", "pubmed_id": "18716133", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "163", "value_type": "transformed count", "reference_series": "GSE12417", "order": "none", "update_date": "Sep 08 2008", "subsets": [ { "dataset_id": "GDS3312", "description": "bone marrow", "sample_id": [ "GSM311598", "GSM311599", "GSM311600", "GSM311601", "GSM311602", "GSM311603", "GSM311604", "GSM311605", "GSM311606", "GSM311607", "GSM311608", "GSM311609", "GSM311610", "GSM311611", "GSM311612", "GSM311613", "GSM311614", "GSM311615", "GSM311616", "GSM311617", "GSM311618", "GSM311619", "GSM311620", "GSM311621", "GSM311622", "GSM311623", "GSM311624", "GSM311625", "GSM311626", "GSM311627", "GSM311628", "GSM311629", "GSM311630", "GSM311631", "GSM311632", "GSM311633", "GSM311634", "GSM311635", "GSM311636", "GSM311637", "GSM311638", "GSM311639", "GSM311640", "GSM311641", "GSM311642", "GSM311643", "GSM311644", "GSM311645", "GSM311646", "GSM311647", "GSM311648", "GSM311649", "GSM311650", "GSM311651", "GSM311652", "GSM311653", "GSM311654", "GSM311655", "GSM311656", "GSM311657", "GSM311658", "GSM311659", "GSM311660", "GSM311661", "GSM311662", "GSM311663", "GSM311664", "GSM311665", "GSM311666", "GSM311667", "GSM311669", "GSM311670", "GSM311671", "GSM311672", "GSM311673", "GSM311674", "GSM311675", "GSM311676", "GSM311677", "GSM311678", "GSM311679", "GSM311680", "GSM311681", "GSM311682", "GSM311683", "GSM311684", "GSM311685", "GSM311686", "GSM311687", "GSM311688", "GSM311689", "GSM311690", "GSM311691", "GSM311692", "GSM311693", "GSM311694", "GSM311695", "GSM311696", "GSM311697", "GSM311698", "GSM311699", "GSM311700", "GSM311701", "GSM311702", "GSM311703", "GSM311704", "GSM311705", "GSM311706", "GSM311707", "GSM311708", "GSM311709", "GSM311710", "GSM311711", "GSM311712", "GSM311713", "GSM311714", "GSM311716", "GSM311717", "GSM311718", "GSM311719", "GSM311720", "GSM311721", "GSM311722", "GSM311723", "GSM311724", "GSM311725", "GSM311726", "GSM311727", "GSM311728", "GSM311729", "GSM311730", "GSM311731", "GSM311732", "GSM311733", "GSM311734", "GSM311735", "GSM311736", "GSM311737", "GSM311738", "GSM311739", "GSM311740", "GSM311741", "GSM311742", "GSM311743", "GSM311744", "GSM311745", "GSM311746", "GSM311747", "GSM311748", "GSM311749", "GSM311750", "GSM311751", "GSM311752", "GSM311753", "GSM311754", "GSM311755", "GSM311756", "GSM311757", "GSM311758", "GSM311759", "GSM311760" ], "type": "tissue", "id": "GDS3312_1" }, { "dataset_id": "GDS3312", "description": "peripheral blood", "sample_id": [ "GSM311668", "GSM311715" ], "type": "tissue", "id": "GDS3312_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3312", "version": 1.0, "instances": "163", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3312.tab", "compression": "gz" } ], [ [ "GDS3313.tab" ], { "title": "Tibolone hormone effect on postmenopausal endometrium", "description": "Comparison of endometria after short-term treatment with tibolone, estradiol (E2), or E2 + medroxyprogesterone acetate (E2 + MPA) in healthy postmenopausal women undergoing hysterectomy. A synthetic steroid, Tibolone is used as an alternative for estrogen or estrogen/progesterone hormone therapy.", "type": "Expression profiling by array", "pubmed_id": "17226044", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE12446", "order": "none", "update_date": "Mar 03 2009", "subsets": [ { "dataset_id": "GDS3313", "description": "control", "sample_id": [ "GSM312508", "GSM312549", "GSM312551", "GSM312552", "GSM312553", "GSM312554", "GSM312555", "GSM312557", "GSM312559" ], "type": "agent", "id": "GDS3313_1" }, { "dataset_id": "GDS3313", "description": "estradiol", "sample_id": [ "GSM312560", "GSM312561", "GSM312563", "GSM312564", "GSM312565", "GSM312566", "GSM312567" ], "type": "agent", "id": "GDS3313_2" }, { "dataset_id": "GDS3313", "description": "estradiol + medroxyprogesteroneacetate", "sample_id": [ "GSM312568", "GSM312667", "GSM312668", "GSM312669", "GSM312671", "GSM312673" ], "type": "agent", "id": "GDS3313_3" }, { "dataset_id": "GDS3313", "description": "tibolone", "sample_id": [ "GSM312675", "GSM312676", "GSM312677", "GSM312678", "GSM312679", "GSM312680", "GSM312681", "GSM312682", "GSM312683" ], "type": "agent", "id": "GDS3313_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3313", "version": 1.0, "instances": "31", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3313.tab", "compression": "gz" } ], [ [ "GDS3315.tab" ], { "title": "Estradiol effect on breast cancer cell line in the absence of protein synthesis", "description": "Analysis of MCF-7 breast cancer cells treated with estradiol (E2) and cycloheximide, an inhibitor of protein synthesis (PS). Primary E2 targets are regulated by E2 in the absence of de novo PS. Results provide insight into mechanisms underlying primary and secondary E2 target gene regulation.", "type": "Expression profiling by array", "pubmed_id": "17986456", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE8597", "order": "none", "update_date": "Jan 02 2009", "subsets": [ { "dataset_id": "GDS3315", "description": "control", "sample_id": [ "GSM213330", "GSM213331", "GSM213332", "GSM213333" ], "type": "agent", "id": "GDS3315_1" }, { "dataset_id": "GDS3315", "description": "estradiol", "sample_id": [ "GSM213326", "GSM213327", "GSM213328", "GSM213329" ], "type": "agent", "id": "GDS3315_2" }, { "dataset_id": "GDS3315", "description": "cycloheximide", "sample_id": [ "GSM213322", "GSM213323", "GSM213324", "GSM213325" ], "type": "agent", "id": "GDS3315_3" }, { "dataset_id": "GDS3315", "description": "estradiol and cycloheximide", "sample_id": [ "GSM213318", "GSM213319", "GSM213320", "GSM213321" ], "type": "agent", "id": "GDS3315_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3315", "version": 1.0, "instances": "16", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3315.tab", "compression": "gz" } ], [ [ "GDS3316.tab" ], { "title": "Leptin deficiency effect on lungs", "description": "Analysis of lungs from leptin-deficient (ob/ob) mutants treated with saline or leptin. Leptin deficiency results in low lung volumes and an attenuated chemical control of breathing. Results provide insight into molecular mechanisms by which leptin alters respiratory system structure and function.", "type": "Expression profiling by array", "pubmed_id": "18467551", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10915", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3316", "description": "leptin deficiency", "sample_id": [ "GSM276720", "GSM276721", "GSM276722" ], "type": "protocol", "id": "GDS3316_1" }, { "dataset_id": "GDS3316", "description": "leptin replacement", "sample_id": [ "GSM276717", "GSM276718", "GSM276719" ], "type": "protocol", "id": "GDS3316_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3316", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3316.tab", "compression": "gz" } ], [ [ "GDS3318.tab" ], { "title": "Sickle cell disease: platelets", "description": "Analysis of platelets from patients with sickle cell disease. Sickle cell disease patients exhibit increased activation of platelets. Results provide insight into the molecular basis of platelet dysfunction in sickle cell disease.", "type": "Expression profiling by array", "pubmed_id": "17353439", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE11524", "order": "none", "update_date": "Aug 29 2008", "subsets": [ { "dataset_id": "GDS3318", "description": "sickle cell disease", "sample_id": [ "GSM290396", "GSM290397", "GSM290398", "GSM290399", "GSM290400", "GSM290401", "GSM290402", "GSM290403", "GSM290404", "GSM290405", "GSM290406", "GSM290407", "GSM290408", "GSM290409", "GSM290410", "GSM290411", "GSM290412", "GSM290413" ], "type": "disease state", "id": "GDS3318_1" }, { "dataset_id": "GDS3318", "description": "control", "sample_id": [ "GSM290414", "GSM290415", "GSM290416", "GSM290417", "GSM290418", "GSM290419", "GSM290420", "GSM290421", "GSM290422", "GSM290423", "GSM290424", "GSM290425" ], "type": "disease state", "id": "GDS3318_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3318", "version": 1.0, "instances": "30", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3318.tab", "compression": "gz" } ], [ [ "GDS3319.tab" ], { "title": "Thyroid carcinoma models", "description": "Analysis of 2, 6, and 10 month old transgenic (Tg) thyroids expressing RET/PTC3 fusion gene or E7 human papillomavirus 16 oncoprotein. The two Tg populations with different initiating mutations both develop thyroid carcinoma. Results provide insight into the different steps leading to carcinoma.", "type": "Expression profiling by array", "pubmed_id": "18583418", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE10743", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3319", "description": "wild type", "sample_id": [ "GSM270854", "GSM271092", "GSM271093" ], "type": "strain", "id": "GDS3319_1" }, { "dataset_id": "GDS3319", "description": "E7 transgenic", "sample_id": [ "GSM271094", "GSM271095", "GSM271096" ], "type": "strain", "id": "GDS3319_2" }, { "dataset_id": "GDS3319", "description": "RET/PTC3 transgenic", "sample_id": [ "GSM271173", "GSM271174", "GSM271175" ], "type": "strain", "id": "GDS3319_3" }, { "dataset_id": "GDS3319", "description": "2 mo", "sample_id": [ "GSM270854", "GSM271094", "GSM271173" ], "type": "age", "id": "GDS3319_4" }, { "dataset_id": "GDS3319", "description": "6 mo", "sample_id": [ "GSM271092", "GSM271095", "GSM271174" ], "type": "age", "id": "GDS3319_5" }, { "dataset_id": "GDS3319", "description": "10 mo", "sample_id": [ "GSM271093", "GSM271096", "GSM271175" ], "type": "age", "id": "GDS3319_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3319", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3319.tab", "compression": "gz" } ], [ [ "GDS332.tab" ], { "title": "Colon carcinoma response to butyrate and aspirin", "description": "Temporal analysis of colon carcinoma cell line CC531 response to 4.5 mM butyrate or 3 mM aspirin. Samples taken at 2, 6, 12, 16 and 24 hours.", "type": "Expression profiling by array", "pubmed_id": "12800193", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE424", "order": "none", "update_date": "May 20 2003", "subsets": [ { "dataset_id": "GDS332", "description": "control", "sample_id": [ "GSM6207", "GSM6208" ], "type": "agent", "id": "GDS332_1" }, { "dataset_id": "GDS332", "description": "butyrate", "sample_id": [ "GSM6209", "GSM6210", "GSM6211", "GSM6212", "GSM6213" ], "type": "agent", "id": "GDS332_2" }, { "dataset_id": "GDS332", "description": "aspirin", "sample_id": [ "GSM6214", "GSM6215", "GSM6216", "GSM6217", "GSM6218" ], "type": "agent", "id": "GDS332_3" }, { "dataset_id": "GDS332", "description": "2 hour", "sample_id": [ "GSM6207", "GSM6209", "GSM6214" ], "type": "time", "id": "GDS332_4" }, { "dataset_id": "GDS332", "description": "6 hour", "sample_id": [ "GSM6210", "GSM6215" ], "type": "time", "id": "GDS332_5" }, { "dataset_id": "GDS332", "description": "12 hour", "sample_id": [ "GSM6211", "GSM6216" ], "type": "time", "id": "GDS332_6" }, { "dataset_id": "GDS332", "description": "16 hour", "sample_id": [ "GSM6212", "GSM6217" ], "type": "time", "id": "GDS332_7" }, { "dataset_id": "GDS332", "description": "24 hour", "sample_id": [ "GSM6208", "GSM6213", "GSM6218" ], "type": "time", "id": "GDS332_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS332", "version": 1.0, "instances": "12", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS332.tab", "compression": "gz" } ], [ [ "GDS3320.tab" ], { "title": "Lmx1b knockout effect on embryonic proximal hindlimb buds", "description": "Analysis of embryonic (e11.5) proximal hindlimb bud tissues deficient for transcription factor Lmx1b. In the developing limb, dorsal-ventral patterning is controlled by LMX1B, expressed in the dorsal mesenchyme. Results provide insight into the Lmx1b-dependent genes in the developing limb bud.", "type": "Expression profiling by array", "pubmed_id": "18351676", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10516", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3320", "description": "wild type", "sample_id": [ "GSM264689", "GSM264690", "GSM264691" ], "type": "genotype/variation", "id": "GDS3320_1" }, { "dataset_id": "GDS3320", "description": "Lmx1b null", "sample_id": [ "GSM264692", "GSM264693", "GSM264694" ], "type": "genotype/variation", "id": "GDS3320_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3320", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3320.tab", "compression": "gz" } ], [ [ "GDS3321.tab" ], { "title": "c-Myc transgenic model of lung adenocarcinomas", "description": "Analysis of cancerous lungs of transgenics overexpressing the c-Myc proto-oncogene in their alveolar epithelia. This overexpression results in bronchiolo-alveolar carcinoma and papillary adenocarcinoma. Results provide insight into the molecular mechanisms by which c-Myc effects tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "18498649", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10954", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3321", "description": "c-Myc transgenic", "sample_id": [ "GSM277576", "GSM277577", "GSM277578", "GSM277579" ], "type": "strain", "id": "GDS3321_1" }, { "dataset_id": "GDS3321", "description": "control", "sample_id": [ "GSM277580", "GSM277581", "GSM277582", "GSM277583" ], "type": "strain", "id": "GDS3321_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3321", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3321.tab", "compression": "gz" } ], [ [ "GDS3322.tab" ], { "title": "Beta-catenin deficiency model: kidney", "description": "Analysis of embryonic (E12.5) kidneys with beta-catenin deficiency targeted to the ureteric bud cell lineage. Inactivation of beta-catenin leads to abnormal ureteric branching and causes renal aplasia or dysplasia. Results provide insight into the role of beta-catenin during ureteric morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "18358465", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE9629", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3322", "description": "beta-catenin knockout", "sample_id": [ "GSM243349", "GSM243350", "GSM243351" ], "type": "genotype/variation", "id": "GDS3322_1" }, { "dataset_id": "GDS3322", "description": "wild type", "sample_id": [ "GSM243346", "GSM243347", "GSM243348" ], "type": "genotype/variation", "id": "GDS3322_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3322", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3322.tab", "compression": "gz" } ], [ [ "GDS3323.tab" ], { "title": "Na+/H+ exchanger 3 deficiency effect on the colon", "description": "Analysis of mutant colons lacking Na+/H+ exchanger 3 (NHE3). NHE3 provides a major route for intestinal Na+ absorption. NHE3 deficient animals develop colitis restricted to the distal colonic mucosa. Results provide insight into the molecular basis of colitis development induced by NHE3 deficiency.", "type": "Expression profiling by array", "pubmed_id": "18467500", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10740", "order": "none", "update_date": "Aug 29 2008", "subsets": [ { "dataset_id": "GDS3323", "description": "wild type", "sample_id": [ "GSM271147", "GSM271148", "GSM271149" ], "type": "genotype/variation", "id": "GDS3323_1" }, { "dataset_id": "GDS3323", "description": "NHE3 null mutant", "sample_id": [ "GSM271150", "GSM271151", "GSM271152" ], "type": "genotype/variation", "id": "GDS3323_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3323", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3323.tab", "compression": "gz" } ], [ [ "GDS3324.tab" ], { "title": "Stromal cells and invasive breast cancer development", "description": "Analysis of epithelium and stroma cells in normal and invasive breast cancer tissues. Information on the role that stroma tissues have on the growth and progression of cancer is limited.Results provide insights into the molecular basis of cancer invasion and metastasis.", "type": "Expression profiling by array", "pubmed_id": "18373191", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "count", "reference_series": "GSE10797", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3324", "description": "normal breast", "sample_id": [ "GSM272727", "GSM272728", "GSM272729", "GSM272730", "GSM272731", "GSM272732", "GSM272733", "GSM272734", "GSM272735", "GSM272736" ], "type": "tissue", "id": "GDS3324_1" }, { "dataset_id": "GDS3324", "description": "invasive breast cancer", "sample_id": [ "GSM272671", "GSM272672", "GSM272673", "GSM272674", "GSM272675", "GSM272676", "GSM272677", "GSM272678", "GSM272679", "GSM272680", "GSM272681", "GSM272682", "GSM272683", "GSM272684", "GSM272685", "GSM272686", "GSM272687", "GSM272688", "GSM272689", "GSM272690", "GSM272691", "GSM272692", "GSM272693", "GSM272694", "GSM272695", "GSM272696", "GSM272697", "GSM272698", "GSM272699", "GSM272700", "GSM272701", "GSM272702", "GSM272703", "GSM272704", "GSM272705", "GSM272706", "GSM272707", "GSM272708", "GSM272709", "GSM272710", "GSM272711", "GSM272712", "GSM272713", "GSM272714", "GSM272715", "GSM272716", "GSM272717", "GSM272718", "GSM272719", "GSM272720", "GSM272721", "GSM272722", "GSM272723", "GSM272724", "GSM272725", "GSM272726" ], "type": "tissue", "id": "GDS3324_2" }, { "dataset_id": "GDS3324", "description": "epithelial", "sample_id": [ "GSM272671", "GSM272673", "GSM272675", "GSM272677", "GSM272679", "GSM272681", "GSM272683", "GSM272685", "GSM272687", "GSM272689", "GSM272691", "GSM272693", "GSM272695", "GSM272697", "GSM272699", "GSM272701", "GSM272703", "GSM272705", "GSM272707", "GSM272709", "GSM272711", "GSM272713", "GSM272715", "GSM272717", "GSM272719", "GSM272721", "GSM272723", "GSM272725", "GSM272727", "GSM272729", "GSM272731", "GSM272733", "GSM272735" ], "type": "cell type", "id": "GDS3324_3" }, { "dataset_id": "GDS3324", "description": "stromal", "sample_id": [ "GSM272672", "GSM272674", "GSM272676", "GSM272678", "GSM272680", "GSM272682", "GSM272684", "GSM272686", "GSM272688", "GSM272690", "GSM272692", "GSM272694", "GSM272696", "GSM272698", "GSM272700", "GSM272702", "GSM272704", "GSM272706", "GSM272708", "GSM272710", "GSM272712", "GSM272714", "GSM272716", "GSM272718", "GSM272720", "GSM272722", "GSM272724", "GSM272726", "GSM272728", "GSM272730", "GSM272732", "GSM272734", "GSM272736" ], "type": "cell type", "id": "GDS3324_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3324", "version": 1.0, "instances": "66", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3324.tab", "compression": "gz" } ], [ [ "GDS3325.tab" ], { "title": "Air pollution exposure effect on children and adults: peripheral blood", "description": "Analysis of peripheral blood from children and adults living in two regions of the Czech Republic (Teplice and Prachatice) with considerably different levels of air pollutants. Results provide insight into whether children and their adult parents respond differently to air pollution.", "type": "Expression profiling by array", "pubmed_id": "18332047", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "71", "value_type": "log2 ratio", "reference_series": "GSE7543", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3325", "description": "high pollution", "sample_id": [ "GSM182755", "GSM182756", "GSM182757", "GSM182758", "GSM182759", "GSM182760", "GSM182761", "GSM182762", "GSM182763", "GSM182764", "GSM182765", "GSM182766", "GSM182767", "GSM182768", "GSM182769", "GSM182770", "GSM182771", "GSM182772", "GSM182773", "GSM182774", "GSM182775", "GSM182776", "GSM182777", "GSM182802", "GSM182803", "GSM182804", "GSM182805", "GSM182806", "GSM182807", "GSM182808", "GSM182809", "GSM182810", "GSM182811", "GSM182812", "GSM182813" ], "type": "stress", "id": "GDS3325_1" }, { "dataset_id": "GDS3325", "description": "low pollution", "sample_id": [ "GSM182778", "GSM182779", "GSM182780", "GSM182781", "GSM182782", "GSM182783", "GSM182784", "GSM182785", "GSM182786", "GSM182787", "GSM182788", "GSM182789", "GSM182790", "GSM182791", "GSM182792", "GSM182793", "GSM182794", "GSM182795", "GSM182796", "GSM182797", "GSM182798", "GSM182799", "GSM182800", "GSM182801", "GSM182814", "GSM182815", "GSM182816", "GSM182817", "GSM182818", "GSM182819", "GSM182820", "GSM182821", "GSM182822", "GSM182823", "GSM182824", "GSM182825" ], "type": "stress", "id": "GDS3325_2" }, { "dataset_id": "GDS3325", "description": "child", "sample_id": [ "GSM182755", "GSM182756", "GSM182757", "GSM182758", "GSM182759", "GSM182760", "GSM182761", "GSM182762", "GSM182763", "GSM182764", "GSM182765", "GSM182766", "GSM182767", "GSM182768", "GSM182769", "GSM182770", "GSM182771", "GSM182772", "GSM182773", "GSM182774", "GSM182775", "GSM182776", "GSM182777", "GSM182778", "GSM182779", "GSM182780", "GSM182781", "GSM182782", "GSM182783", "GSM182784", "GSM182785", "GSM182786", "GSM182787", "GSM182788", "GSM182789", "GSM182790", "GSM182791", "GSM182792", "GSM182793", "GSM182794", "GSM182795", "GSM182796", "GSM182797", "GSM182798", "GSM182799", "GSM182800", "GSM182801" ], "type": "development stage", "id": "GDS3325_3" }, { "dataset_id": "GDS3325", "description": "adult", "sample_id": [ "GSM182802", "GSM182803", "GSM182804", "GSM182805", "GSM182806", "GSM182807", "GSM182808", "GSM182809", "GSM182810", "GSM182811", "GSM182812", "GSM182813", "GSM182814", "GSM182815", "GSM182816", "GSM182817", "GSM182818", "GSM182819", "GSM182820", "GSM182821", "GSM182822", "GSM182823", "GSM182824", "GSM182825" ], "type": "development stage", "id": "GDS3325_4" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS3325", "version": 1.0, "instances": "71", "variables": 18358, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3325.tab", "compression": "gz" } ], [ [ "GDS3326.tab" ], { "title": "Periodontal therapy effect on peripheral blood monocytes: time course", "description": "Analysis of peripheral blood monocytes from periodontitis patients up to 10 weeks after initiation of periodontal therapy. Periodontitis is associated with the process of atherosclerosis. Results provide insight into the molecular basis of a systemic anti-inflammatory effect of periodontal therapy.", "type": "Expression profiling by array", "pubmed_id": "17716309", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "59", "value_type": "transformed count", "reference_series": "GSE6751", "order": "ordered", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3326", "description": "1 week prior to periodontal therapy", "sample_id": [ "GSM155448", "GSM155452", "GSM155455", "GSM155459", "GSM155463", "GSM155467", "GSM155471", "GSM155475", "GSM155479", "GSM155483", "GSM155487", "GSM155491", "GSM155495", "GSM155499", "GSM155503" ], "type": "time", "id": "GDS3326_1" }, { "dataset_id": "GDS3326", "description": "treatment initiation", "sample_id": [ "GSM155449", "GSM155456", "GSM155460", "GSM155464", "GSM155468", "GSM155472", "GSM155476", "GSM155480", "GSM155484", "GSM155488", "GSM155492", "GSM155496", "GSM155500", "GSM155504" ], "type": "time", "id": "GDS3326_2" }, { "dataset_id": "GDS3326", "description": "6 weeks after treatment initiation", "sample_id": [ "GSM155450", "GSM155453", "GSM155457", "GSM155461", "GSM155465", "GSM155469", "GSM155473", "GSM155477", "GSM155481", "GSM155485", "GSM155489", "GSM155493", "GSM155497", "GSM155501", "GSM155505" ], "type": "time", "id": "GDS3326_3" }, { "dataset_id": "GDS3326", "description": "10 weeks after treatment initiation", "sample_id": [ "GSM155451", "GSM155454", "GSM155458", "GSM155462", "GSM155466", "GSM155470", "GSM155474", "GSM155478", "GSM155482", "GSM155486", "GSM155490", "GSM155494", "GSM155498", "GSM155502", "GSM155506" ], "type": "time", "id": "GDS3326_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3326", "version": 1.0, "instances": "59", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3326.tab", "compression": "gz" } ], [ [ "GDS3329.tab" ], { "title": "Cytogenetically normal acute myeloid leukemia_test set", "description": "Analysis of mononuclear cells from bone marrow or peripheral blood from a test set of adult patients with cytogenetically normal acute myeloid leukemia (CN-AML). CN-AML patients show heterogeneous treatment outcomes. Results provide insight into the prognostic value of a gene signature for CN-AML.", "type": "Expression profiling by array", "pubmed_id": "18716133", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "transformed count", "reference_series": "GSE12417", "order": "none", "update_date": "Mar 21 2013", "subsets": [ { "dataset_id": "GDS3329", "description": "bone marrow", "sample_id": [ "GSM316652", "GSM316653", "GSM316654", "GSM316655", "GSM316656", "GSM316657", "GSM316658", "GSM316659", "GSM316660", "GSM316661", "GSM316662", "GSM316663", "GSM316664", "GSM316665", "GSM316666", "GSM316667", "GSM316668", "GSM316669", "GSM316670", "GSM316671", "GSM316672", "GSM316673", "GSM316674", "GSM316676", "GSM316677", "GSM316678", "GSM316679", "GSM316680", "GSM316681", "GSM316682", "GSM316683", "GSM316684", "GSM316685", "GSM316686", "GSM316687", "GSM316688", "GSM316689", "GSM316690", "GSM316691", "GSM316692", "GSM316693", "GSM316694", "GSM316696", "GSM316697", "GSM316698", "GSM316699", "GSM316700", "GSM316701", "GSM316703", "GSM316704", "GSM316705", "GSM316706", "GSM316707", "GSM316708", "GSM316709", "GSM316710", "GSM316711", "GSM316713", "GSM316714", "GSM316715", "GSM316716", "GSM316717", "GSM316718", "GSM316719", "GSM316720", "GSM316721", "GSM316722", "GSM316723", "GSM316724", "GSM316726", "GSM316727", "GSM316728", "GSM316729", "GSM316730" ], "type": "tissue", "id": "GDS3329_1" }, { "dataset_id": "GDS3329", "description": "peripheral blood", "sample_id": [ "GSM316675", "GSM316695", "GSM316702", "GSM316712", "GSM316725" ], "type": "tissue", "id": "GDS3329_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3329", "version": 1.0, "instances": "79", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3329.tab", "compression": "gz" } ], [ [ "GDS3330.tab" ], { "title": "Methotrexate-resistant HT29 colon adenocarcinoma cell line", "description": "Analysis of HT29 colon cancer cells sensitive or resistant to methotrexate (MTX). MTX is used in the treatment of cancer. Chemotherapy effectiveness in cancer cells is compromised by development of drug resistance. Results provide insight into molecular mechanisms associated with drug resistance.", "type": "Expression profiling by array", "pubmed_id": [ "18694510", "19732436", "21864507" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11440", "order": "none", "update_date": "Jun 20 2013", "subsets": [ { "dataset_id": "GDS3330", "description": "HT29: MTX-sensitive", "sample_id": [ "GSM288491", "GSM288497", "GSM288499" ], "type": "cell line", "id": "GDS3330_1" }, { "dataset_id": "GDS3330", "description": "HT29: MTX-resistant", "sample_id": [ "GSM288501", "GSM288502", "GSM288536" ], "type": "cell line", "id": "GDS3330_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3330", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3330.tab", "compression": "gz" } ], [ [ "GDS3331.tab" ], { "title": "Transcription factor paired box 3 knockin embryos: palate", "description": "Analysis of E14.5 palatal shelves of knockin mutants expressing developmentally-regulated transcription factor Pax3 beyond the time at which it is normally shut off. Cleft palate observed in newborns persistently expressing Pax3. Results provide insight into the role of Pax3 in palate development.", "type": "Expression profiling by array", "pubmed_id": "18483623", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE11400", "order": "none", "update_date": "Sep 08 2009", "subsets": [ { "dataset_id": "GDS3331", "description": "paired box 3 knockin", "sample_id": [ "GSM287781", "GSM287782", "GSM287785", "GSM287786" ], "type": "genotype/variation", "id": "GDS3331_1" }, { "dataset_id": "GDS3331", "description": "wildtype", "sample_id": [ "GSM287783", "GSM287784", "GSM287787", "GSM287788" ], "type": "genotype/variation", "id": "GDS3331_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3331", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3331.tab", "compression": "gz" } ], [ [ "GDS3332.tab" ], { "title": "Wine fermentation effect on yeast: time course", "description": "Analysis of Saccharomyces cerevisiae, strain Vin13, subjected to ethanol levels up to 10% during a 15-day wine fermentation. Results provide insight into molecular mechanisms underlying the adaptive response of yeast to the long-term environmental stresses present during alcoholic fermentation.", "type": "Expression profiling by array", "pubmed_id": "18215224", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE8536", "order": "none", "update_date": "Mar 06 2009", "subsets": [ { "dataset_id": "GDS3332", "description": "1 h", "sample_id": [ "GSM211831", "GSM211832", "GSM211833" ], "type": "time", "id": "GDS3332_1" }, { "dataset_id": "GDS3332", "description": "12 h", "sample_id": [ "GSM211834", "GSM211835", "GSM211836" ], "type": "time", "id": "GDS3332_2" }, { "dataset_id": "GDS3332", "description": "24 h", "sample_id": [ "GSM211837", "GSM211838", "GSM211839" ], "type": "time", "id": "GDS3332_3" }, { "dataset_id": "GDS3332", "description": "48 h", "sample_id": [ "GSM211840", "GSM211841", "GSM211842" ], "type": "time", "id": "GDS3332_4" }, { "dataset_id": "GDS3332", "description": "60 h", "sample_id": [ "GSM211843", "GSM211844", "GSM211845" ], "type": "time", "id": "GDS3332_5" }, { "dataset_id": "GDS3332", "description": "120 h", "sample_id": [ "GSM211846", "GSM211847", "GSM211848" ], "type": "time", "id": "GDS3332_6" }, { "dataset_id": "GDS3332", "description": "340 h", "sample_id": [ "GSM211849", "GSM211850", "GSM211851" ], "type": "time", "id": "GDS3332_7" }, { "dataset_id": "GDS3332", "description": "control", "sample_id": [ "GSM211831", "GSM211832", "GSM211833", "GSM211834", "GSM211835", "GSM211836" ], "type": "stress", "id": "GDS3332_8" }, { "dataset_id": "GDS3332", "description": "0.5% ethanol", "sample_id": [ "GSM211837", "GSM211838", "GSM211839" ], "type": "stress", "id": "GDS3332_9" }, { "dataset_id": "GDS3332", "description": "2% ethanol", "sample_id": [ "GSM211840", "GSM211841", "GSM211842" ], "type": "stress", "id": "GDS3332_10" }, { "dataset_id": "GDS3332", "description": "3.5% ethanol", "sample_id": [ "GSM211843", "GSM211844", "GSM211845" ], "type": "stress", "id": "GDS3332_11" }, { "dataset_id": "GDS3332", "description": "7% ethanol", "sample_id": [ "GSM211846", "GSM211847", "GSM211848" ], "type": "stress", "id": "GDS3332_12" }, { "dataset_id": "GDS3332", "description": "10% ethanol", "sample_id": [ "GSM211849", "GSM211850", "GSM211851" ], "type": "stress", "id": "GDS3332_13" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3332", "version": 1.0, "instances": "21", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3332.tab", "compression": "gz" } ], [ [ "GDS3333.tab" ], { "title": "Porphyromonas gingivalis SerB mutant infection effect on immortalized gingival epithelial cells", "description": "Analysis of immortalized gingival keratinocytes (HIGKs) infected with a Porphyromonas gingivalis SerB mutant strain. SerB mutants are deficient in internalization and survival in HIGKs. Results provide insight into the role of SerB in the interaction between P. gingivalis and HIGKs.", "type": "Expression profiling by array", "pubmed_id": "18391005", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10526", "order": "none", "update_date": "Mar 09 2009", "subsets": [ { "dataset_id": "GDS3333", "description": "P. gingivalis SerB mutant strain", "sample_id": [ "GSM265989", "GSM265990", "GSM265991", "GSM265992" ], "type": "infection", "id": "GDS3333_1" }, { "dataset_id": "GDS3333", "description": "P. gingivalis wildtype strain", "sample_id": [ "GSM245725", "GSM245726", "GSM245727", "GSM245728" ], "type": "infection", "id": "GDS3333_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3333", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3333.tab", "compression": "gz" } ], [ [ "GDS3334.tab" ], { "title": "Skin carcinogenesis model", "description": "Analysis of papillomas initiated by DMBA/TPA treatment of epidermal keratinocytes deficient for activating transcriptional factor 2 (ATF2). ATF2 mutant animals show increased susceptibility to papillomas relative to the WT counterparts. Results provide insight into the role of ATF2 in skin cancer.", "type": "Expression profiling by array", "pubmed_id": "18227516", "platform": "GPL4234", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46133", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE9328", "order": "none", "update_date": "Mar 09 2009", "subsets": [ { "dataset_id": "GDS3334", "description": "wildtype", "sample_id": [ "GSM237606", "GSM237607", "GSM237608" ], "type": "genotype/variation", "id": "GDS3334_1" }, { "dataset_id": "GDS3334", "description": "activating transcriptional factor 2 null", "sample_id": [ "GSM237609", "GSM237610", "GSM237611" ], "type": "genotype/variation", "id": "GDS3334_2" } ], "taxid": "10090", "genes": 33750, "aggregation_function": "mean", "name": "GDS3334", "version": 1.0, "instances": "6", "variables": 33752, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3334.tab", "compression": "gz" } ], [ [ "GDS3341.tab" ], { "title": "Nasopharyngeal carcinoma", "description": "Analysis of 31 laser-captured, microdissected nasopharyngeal carcinoma (NPC) tissues samples. NPC is an Epstein-Barr virus (EBV)-associated epithelial cancer prevalent in Southeast Asia. Results provide insight into the molecular mechanisms involved in EBV-associated epithelial cancers.", "type": "Expression profiling by array", "pubmed_id": [ "17119049", "16912175", "22880099" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "41", "value_type": "transformed count", "reference_series": "GSE12452", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3341", "description": "control", "sample_id": [ "GSM312896", "GSM312897", "GSM312898", "GSM312899", "GSM312900", "GSM312901", "GSM312902", "GSM312903", "GSM312904", "GSM312905" ], "type": "disease state", "id": "GDS3341_1" }, { "dataset_id": "GDS3341", "description": "nasopharyngeal carcinoma", "sample_id": [ "GSM312906", "GSM312907", "GSM312908", "GSM312909", "GSM312910", "GSM312911", "GSM312912", "GSM312913", "GSM312914", "GSM312915", "GSM312916", "GSM312917", "GSM312918", "GSM312919", "GSM312920", "GSM312921", "GSM312922", "GSM312923", "GSM312924", "GSM312925", "GSM312926", "GSM312927", "GSM312928", "GSM312929", "GSM312930", "GSM312931", "GSM312932", "GSM312933", "GSM312934", "GSM312935", "GSM312936" ], "type": "disease state", "id": "GDS3341_2" }, { "dataset_id": "GDS3341", "description": "n/a", "sample_id": [ "GSM312896", "GSM312897", "GSM312898", "GSM312899", "GSM312900", "GSM312901", "GSM312902", "GSM312903", "GSM312904", "GSM312905" ], "type": "other", "id": "GDS3341_3" }, { "dataset_id": "GDS3341", "description": "stage T1N0", "sample_id": [ "GSM312914", "GSM312920", "GSM312923", "GSM312929", "GSM312933", "GSM312934" ], "type": "other", "id": "GDS3341_4" }, { "dataset_id": "GDS3341", "description": "stage T1N1", "sample_id": [ "GSM312906", "GSM312911", "GSM312912", "GSM312913", "GSM312916", "GSM312919", "GSM312921", "GSM312922", "GSM312924", "GSM312932" ], "type": "other", "id": "GDS3341_5" }, { "dataset_id": "GDS3341", "description": "stage T2N1", "sample_id": [ "GSM312910", "GSM312918", "GSM312926", "GSM312930", "GSM312935" ], "type": "other", "id": "GDS3341_6" }, { "dataset_id": "GDS3341", "description": "stage T2N2", "sample_id": [ "GSM312907", "GSM312909", "GSM312915", "GSM312917", "GSM312927", "GSM312928" ], "type": "other", "id": "GDS3341_7" }, { "dataset_id": "GDS3341", "description": "stage T3N0", "sample_id": [ "GSM312925" ], "type": "other", "id": "GDS3341_8" }, { "dataset_id": "GDS3341", "description": "stage T3N1", "sample_id": [ "GSM312931" ], "type": "other", "id": "GDS3341_9" }, { "dataset_id": "GDS3341", "description": "stage T3N2", "sample_id": [ "GSM312908", "GSM312936" ], "type": "other", "id": "GDS3341_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3341", "version": 1.0, "instances": "41", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3341.tab", "compression": "gz" } ], [ [ "GDS3342.tab" ], { "title": "Curcumin effect on oxidatively stressed monocyte cell line: time course", "description": "Analysis of U937 monoctyes exposed to oxidative stress then treated for 4 or 18 hrs with curcumin, a dietary polyphenol. Curcumin restores oxidative stress impaired histone deacetylase-2 activity and corticosteroid efficacy in vitro. Results provide insight into the molecular basis of these effects.", "type": "Expression profiling by array", "pubmed_id": "18421014", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE10896", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3342", "description": "control", "sample_id": [ "GSM276209", "GSM276210", "GSM276213", "GSM276214", "GSM276217", "GSM276218", "GSM276221", "GSM276222", "GSM276225", "GSM276226", "GSM276229", "GSM276230" ], "type": "stress", "id": "GDS3342_1" }, { "dataset_id": "GDS3342", "description": "oxidative stress", "sample_id": [ "GSM276211", "GSM276212", "GSM276215", "GSM276216", "GSM276219", "GSM276220", "GSM276223", "GSM276224", "GSM276227", "GSM276228", "GSM276231", "GSM276232" ], "type": "stress", "id": "GDS3342_2" }, { "dataset_id": "GDS3342", "description": "untreated", "sample_id": [ "GSM276209", "GSM276211", "GSM276213", "GSM276215", "GSM276217", "GSM276219", "GSM276221", "GSM276223", "GSM276225", "GSM276227", "GSM276229", "GSM276231" ], "type": "agent", "id": "GDS3342_3" }, { "dataset_id": "GDS3342", "description": "curcumin", "sample_id": [ "GSM276210", "GSM276212", "GSM276214", "GSM276216", "GSM276218", "GSM276220", "GSM276222", "GSM276224", "GSM276226", "GSM276228", "GSM276230", "GSM276232" ], "type": "agent", "id": "GDS3342_4" }, { "dataset_id": "GDS3342", "description": "4 h", "sample_id": [ "GSM276209", "GSM276210", "GSM276211", "GSM276212", "GSM276217", "GSM276218", "GSM276219", "GSM276220", "GSM276225", "GSM276226", "GSM276227", "GSM276228" ], "type": "time", "id": "GDS3342_5" }, { "dataset_id": "GDS3342", "description": "18 h", "sample_id": [ "GSM276213", "GSM276214", "GSM276215", "GSM276216", "GSM276221", "GSM276222", "GSM276223", "GSM276224", "GSM276229", "GSM276230", "GSM276231", "GSM276232" ], "type": "time", "id": "GDS3342_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3342", "version": 1.0, "instances": "24", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3342.tab", "compression": "gz" } ], [ [ "GDS3343.tab" ], { "title": "Evi-1 deficiency effect on hematopoietic stem cells", "description": "Analysis of hematopoietic stem cells lacking the ecotropic viral integration site-1 (Evi-1) gene. Evi-1 is an oncogene associated with myeloid leukemia. Results provide insight into the role of Evi-1 in normal hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "18682242", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE11557", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3343", "description": "wild type", "sample_id": [ "GSM291121", "GSM291123" ], "type": "genotype/variation", "id": "GDS3343_1" }, { "dataset_id": "GDS3343", "description": "Evi-1 null", "sample_id": [ "GSM291125", "GSM291127" ], "type": "genotype/variation", "id": "GDS3343_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3343", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3343.tab", "compression": "gz" } ], [ [ "GDS3344.tab" ], { "title": "FHL2 deficiency effect on spontaneously immortalized embryonic fibroblasts", "description": "Analysis of spontaneously immortalized embryonic fibroblasts (EFs) lacking the LIM-only protein FHL2. FHL2 deficiency results in reduced proliferative capacity of spontaneously immortalized EFs. Results provide insight into the role of FLH2 in cell cycle and cell proliferation.", "type": "Expression profiling by array", "pubmed_id": [ "18378678", "19018287" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10902", "order": "none", "update_date": "Sep 10 2008", "subsets": [ { "dataset_id": "GDS3344", "description": "wild type", "sample_id": [ "GSM276426", "GSM276427", "GSM276428" ], "type": "genotype/variation", "id": "GDS3344_1" }, { "dataset_id": "GDS3344", "description": "FHL2 null", "sample_id": [ "GSM276423", "GSM276424", "GSM276425" ], "type": "genotype/variation", "id": "GDS3344_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3344", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3344.tab", "compression": "gz" } ], [ [ "GDS3345.tab" ], { "title": "Various mental disorders: postmortem brains", "description": "Analysis of postmortem prefrontal cortices from subjects with bipolar disorder, depression, and schizophrenia. Results provide insight into the molecular pathophysiology of these mental disorders.", "type": "Expression profiling by array", "pubmed_id": "14743183", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE12654", "order": "none", "update_date": "Mar 04 2009", "subsets": [ { "dataset_id": "GDS3345", "description": "control", "sample_id": [ "GSM317649", "GSM317652", "GSM317666", "GSM317672", "GSM317679", "GSM317681", "GSM317682", "GSM317683", "GSM317689", "GSM317691", "GSM317692", "GSM317693", "GSM317696", "GSM317697", "GSM317698" ], "type": "disease state", "id": "GDS3345_1" }, { "dataset_id": "GDS3345", "description": "depression", "sample_id": [ "GSM317650", "GSM317651", "GSM317657", "GSM317667", "GSM317670", "GSM317674", "GSM317675", "GSM317677", "GSM317678", "GSM317687", "GSM317695" ], "type": "disease state", "id": "GDS3345_2" }, { "dataset_id": "GDS3345", "description": "bipolar disorder", "sample_id": [ "GSM317653", "GSM317656", "GSM317658", "GSM317660", "GSM317663", "GSM317664", "GSM317665", "GSM317673", "GSM317686", "GSM317688", "GSM317690" ], "type": "disease state", "id": "GDS3345_3" }, { "dataset_id": "GDS3345", "description": "schizophrenia", "sample_id": [ "GSM317654", "GSM317655", "GSM317659", "GSM317661", "GSM317662", "GSM317668", "GSM317669", "GSM317671", "GSM317676", "GSM317680", "GSM317684", "GSM317685", "GSM317694" ], "type": "disease state", "id": "GDS3345_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3345", "version": 1.0, "instances": "50", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3345.tab", "compression": "gz" } ], [ [ "GDS3346.tab" ], { "title": "Helicobacter pylori infection effect on a gastric epithelial progenitor cell line", "description": "Analysis of a gastric epithelial progenitor (mGEP) cell line infected with two Helicobacter pylori strains: chronic atrophic gastritis (ChAG)-associated Kx1 and gastric cancer-associated Kx2. Results provide insight into the molecular basis of the ChAG-to-cancer transition induced by H. pylori.", "type": "Expression profiling by array", "pubmed_id": "18332421", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE10262", "order": "none", "update_date": "Mar 09 2009", "subsets": [ { "dataset_id": "GDS3346", "description": "non-progenitor", "sample_id": [ "GSM259186", "GSM259187", "GSM259188", "GSM259189", "GSM259190", "GSM259191", "GSM259192", "GSM259193", "GSM259194" ], "type": "cell line", "id": "GDS3346_1" }, { "dataset_id": "GDS3346", "description": "gastric epithelial progenitor", "sample_id": [ "GSM259177", "GSM259178", "GSM259179", "GSM259180", "GSM259181", "GSM259182", "GSM259183", "GSM259184", "GSM259185" ], "type": "cell line", "id": "GDS3346_2" }, { "dataset_id": "GDS3346", "description": "control", "sample_id": [ "GSM259177", "GSM259178", "GSM259179", "GSM259186", "GSM259187", "GSM259188" ], "type": "infection", "id": "GDS3346_3" }, { "dataset_id": "GDS3346", "description": "Kx1", "sample_id": [ "GSM259180", "GSM259181", "GSM259182", "GSM259189", "GSM259190", "GSM259191" ], "type": "infection", "id": "GDS3346_4" }, { "dataset_id": "GDS3346", "description": "Kx2", "sample_id": [ "GSM259183", "GSM259184", "GSM259185", "GSM259192", "GSM259193", "GSM259194" ], "type": "infection", "id": "GDS3346_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3346", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3346.tab", "compression": "gz" } ], [ [ "GDS3349.tab" ], { "title": "STAT5 depleted pro-B cell line response to IL-3: time course (MG-U74A)", "description": "Analysis of STAT5A and STAT5B depleted proB Ba/F3-beta cells stimulated with IL-3 for 0.5 or 2 hours. STAT5A and STAT5B are members of the family of signal transducers and activators of transcription. Results identify IL-3 inducible STAT5 target genes.", "type": "Expression profiling by array", "pubmed_id": "18492722", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE10389", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3349", "description": "control", "sample_id": [ "GSM262251" ], "type": "agent", "id": "GDS3349_1" }, { "dataset_id": "GDS3349", "description": "IL-3", "sample_id": [ "GSM262259", "GSM262260", "GSM262264", "GSM262269" ], "type": "agent", "id": "GDS3349_2" }, { "dataset_id": "GDS3349", "description": "baseline", "sample_id": [ "GSM262251" ], "type": "time", "id": "GDS3349_3" }, { "dataset_id": "GDS3349", "description": "0.5 h", "sample_id": [ "GSM262259", "GSM262264" ], "type": "time", "id": "GDS3349_4" }, { "dataset_id": "GDS3349", "description": "2 h", "sample_id": [ "GSM262260", "GSM262269" ], "type": "time", "id": "GDS3349_5" }, { "dataset_id": "GDS3349", "description": "scramble control", "sample_id": [ "GSM262259", "GSM262260", "GSM262251" ], "type": "protocol", "id": "GDS3349_6" }, { "dataset_id": "GDS3349", "description": "STAT5 depletion", "sample_id": [ "GSM262264", "GSM262269" ], "type": "protocol", "id": "GDS3349_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3349", "version": 1.0, "instances": "5", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3349.tab", "compression": "gz" } ], [ [ "GDS3350.tab" ], { "title": "STAT5 depleted pro-B cell line response to IL-3: time course (MG-U74B)", "description": "Analysis of STAT5A and STAT5B depleted pro-B Ba/F3-beta cells stimulated with IL-3 for 0.5 or 2 hours. STAT5A and STAT5B are members of the family of signal transducers and activators of transcription. Results identify IL-3 inducible STAT5 target genes.", "type": "Expression profiling by array", "pubmed_id": "18492722", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE10389", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3350", "description": "control", "sample_id": [ "GSM262273" ], "type": "agent", "id": "GDS3350_1" }, { "dataset_id": "GDS3350", "description": "IL-3", "sample_id": [ "GSM262275", "GSM262276", "GSM262277", "GSM262278" ], "type": "agent", "id": "GDS3350_2" }, { "dataset_id": "GDS3350", "description": "baseline", "sample_id": [ "GSM262273" ], "type": "time", "id": "GDS3350_3" }, { "dataset_id": "GDS3350", "description": "0.5 h", "sample_id": [ "GSM262275", "GSM262277" ], "type": "time", "id": "GDS3350_4" }, { "dataset_id": "GDS3350", "description": "2 h", "sample_id": [ "GSM262276", "GSM262278" ], "type": "time", "id": "GDS3350_5" }, { "dataset_id": "GDS3350", "description": "scramble control", "sample_id": [ "GSM262273", "GSM262275", "GSM262276" ], "type": "protocol", "id": "GDS3350_6" }, { "dataset_id": "GDS3350", "description": "STAT5 depletion", "sample_id": [ "GSM262277", "GSM262278" ], "type": "protocol", "id": "GDS3350_7" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS3350", "version": 1.0, "instances": "5", "variables": 9257, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3350.tab", "compression": "gz" } ], [ [ "GDS3351.tab" ], { "title": "STAT5 depleted pro-B cell line response to IL-3: time course (MG-U74C)", "description": "Analysis of STAT5A and STAT5B depleted pro-B Ba/F3-beta cells stimulated with IL-3 for 0.5 or 2 hours. STAT5A and STAT5B are members of the family of signal transducers and activators of transcription. Results identify IL-3 inducible STAT5 target genes.", "type": "Expression profiling by array", "pubmed_id": "18492722", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE10389", "order": "none", "update_date": "Mar 05 2009", "subsets": [ { "dataset_id": "GDS3351", "description": "control", "sample_id": [ "GSM262554" ], "type": "agent", "id": "GDS3351_1" }, { "dataset_id": "GDS3351", "description": "IL-3", "sample_id": [ "GSM262279", "GSM262280", "GSM262281", "GSM262282" ], "type": "agent", "id": "GDS3351_2" }, { "dataset_id": "GDS3351", "description": "baseline", "sample_id": [ "GSM262554" ], "type": "time", "id": "GDS3351_3" }, { "dataset_id": "GDS3351", "description": "0.5 h", "sample_id": [ "GSM262279", "GSM262281" ], "type": "time", "id": "GDS3351_4" }, { "dataset_id": "GDS3351", "description": "2 h", "sample_id": [ "GSM262280", "GSM262282" ], "type": "time", "id": "GDS3351_5" }, { "dataset_id": "GDS3351", "description": "scramble control", "sample_id": [ "GSM262279", "GSM262280", "GSM262554" ], "type": "protocol", "id": "GDS3351_6" }, { "dataset_id": "GDS3351", "description": "STAT5 depletion", "sample_id": [ "GSM262281", "GSM262282" ], "type": "protocol", "id": "GDS3351_7" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS3351", "version": 1.0, "instances": "5", "variables": 9980, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3351.tab", "compression": "gz" } ], [ [ "GDS3352.tab" ], { "title": "Juvenile hormone III effect on adult female insects", "description": "Analysis of whole bodies of yellow white (y, w) adult female insects topically treated with exogenous juvenile hormone (JH) III. JH can modulate immunity in insects. Results provide insight into the molecular mechanisms underlying JH regulation of innate immunity in insects.", "type": "Expression profiling by array", "pubmed_id": "18689425", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9001", "order": "none", "update_date": "Sep 12 2008", "subsets": [ { "dataset_id": "GDS3352", "description": "juvenile hormone III", "sample_id": [ "GSM227265", "GSM227274" ], "type": "agent", "id": "GDS3352_1" }, { "dataset_id": "GDS3352", "description": "control", "sample_id": [ "GSM226859", "GSM227275" ], "type": "agent", "id": "GDS3352_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS3352", "version": 1.0, "instances": "4", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3352.tab", "compression": "gz" } ], [ [ "GDS3353.tab" ], { "title": "Postmenopausal osteoporosis: circulating B lymphocytes", "description": "Analysis of circulating B lymphocytes from postmenopausal women with low or high bone mineral density (BMD). Osteoporosis is characterized by low BMD. Results provide insight into the role of B cells in bone metabolism and osteoporosis.", "type": "Expression profiling by array", "pubmed_id": "18433299", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE7429", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3353", "description": "high bone mineral density", "sample_id": [ "GSM179758", "GSM179759", "GSM179760", "GSM179761", "GSM179762", "GSM179763", "GSM179764", "GSM179765", "GSM179766", "GSM179767" ], "type": "disease state", "id": "GDS3353_1" }, { "dataset_id": "GDS3353", "description": "low bone mineral density", "sample_id": [ "GSM179768", "GSM179769", "GSM179770", "GSM179771", "GSM179772", "GSM179773", "GSM179774", "GSM179775", "GSM179776", "GSM179777" ], "type": "disease state", "id": "GDS3353_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3353", "version": 1.0, "instances": "20", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3353.tab", "compression": "gz" } ], [ [ "GDS3354.tab" ], { "title": "Low-dose cadmium effect on prostate epithelial cells: time course", "description": "Analysis of immortalized normal prostate epithelial cell line NPrEC exposed to non-cytotoxic levels of cadmium (2.5uM CdCl2) for up to 32hrs. Cadmium is implicated in prostate carcinogenesis. Results provide insight into mechanisms underlying the initiation of carcinogenesis by Cd in the prostate.", "type": "Expression profiling by array", "pubmed_id": "18560533", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE9951", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3354", "description": "control", "sample_id": [ "GSM251630", "GSM251633", "GSM251635", "GSM251636", "GSM251637", "GSM251638", "GSM251639", "GSM251640", "GSM251649", "GSM251686" ], "type": "agent", "id": "GDS3354_1" }, { "dataset_id": "GDS3354", "description": "cadmium", "sample_id": [ "GSM251620", "GSM251621", "GSM251622", "GSM251623", "GSM251624", "GSM251625", "GSM251626", "GSM251627", "GSM251629" ], "type": "agent", "id": "GDS3354_2" }, { "dataset_id": "GDS3354", "description": "0 h", "sample_id": [ "GSM251620", "GSM251621", "GSM251630", "GSM251633" ], "type": "time", "id": "GDS3354_3" }, { "dataset_id": "GDS3354", "description": "4 h", "sample_id": [ "GSM251622", "GSM251635", "GSM251636" ], "type": "time", "id": "GDS3354_4" }, { "dataset_id": "GDS3354", "description": "8 h", "sample_id": [ "GSM251623", "GSM251624", "GSM251637", "GSM251638" ], "type": "time", "id": "GDS3354_5" }, { "dataset_id": "GDS3354", "description": "16 h", "sample_id": [ "GSM251625", "GSM251626", "GSM251639", "GSM251640" ], "type": "time", "id": "GDS3354_6" }, { "dataset_id": "GDS3354", "description": "32 h", "sample_id": [ "GSM251627", "GSM251629", "GSM251649", "GSM251686" ], "type": "time", "id": "GDS3354_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3354", "version": 1.0, "instances": "19", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3354.tab", "compression": "gz" } ], [ [ "GDS3355.tab" ], { "title": "Angiopoietin-1 stimulation of vascular endothelial cells", "description": "Analysis of HUVECs upon Ang1 stimulation in the presence (confluent) or absence (sparse) of cell-cell contacts. The Ang1-Tie2 system is implicated in both vascular quiescence and angiogenesis. Results provide insight into Ang1 signalling in the presence or absence of cell-cell contacts.", "type": "Expression profiling by array", "pubmed_id": "18425120", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE9677", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3355", "description": "control", "sample_id": [ "GSM244647", "GSM244649", "GSM244651", "GSM244653" ], "type": "agent", "id": "GDS3355_1" }, { "dataset_id": "GDS3355", "description": "Ang1", "sample_id": [ "GSM244648", "GSM244650", "GSM244652", "GSM244654" ], "type": "agent", "id": "GDS3355_2" }, { "dataset_id": "GDS3355", "description": "confluent", "sample_id": [ "GSM244647", "GSM244648", "GSM244649", "GSM244650" ], "type": "growth protocol", "id": "GDS3355_3" }, { "dataset_id": "GDS3355", "description": "sparse", "sample_id": [ "GSM244651", "GSM244652", "GSM244653", "GSM244654" ], "type": "growth protocol", "id": "GDS3355_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3355", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3355.tab", "compression": "gz" } ], [ [ "GDS3356.tab" ], { "title": "Bronchopulmonary dysplasia: premature newborn umbilical cords", "description": "Analysis of umbilical cord tissues from extremely low gestational age newborns, between 23 to 27 weeks gestational age, some of who subsequently developed the chronic lung disorder bronchopulmonary dysplasia (BPD). Results provide insight into the molecular mechanisms underlying BPD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "17916252", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE8586", "order": "none", "update_date": "Sep 18 2008", "subsets": [ { "dataset_id": "GDS3356", "description": "lower gestational age", "sample_id": [ "GSM213074", "GSM213077", "GSM213078", "GSM213082", "GSM213083", "GSM213085", "GSM213088", "GSM213091", "GSM213092", "GSM213094", "GSM213095", "GSM213096", "GSM213100", "GSM213102", "GSM213103", "GSM213104", "GSM213107", "GSM213108", "GSM213111", "GSM213112", "GSM213114", "GSM213115", "GSM213116", "GSM213117", "GSM213118", "GSM213119", "GSM213120", "GSM213122" ], "type": "development stage", "id": "GDS3356_1" }, { "dataset_id": "GDS3356", "description": "higher gestational age", "sample_id": [ "GSM213072", "GSM213073", "GSM213075", "GSM213076", "GSM213079", "GSM213080", "GSM213081", "GSM213084", "GSM213086", "GSM213087", "GSM213089", "GSM213090", "GSM213093", "GSM213097", "GSM213098", "GSM213099", "GSM213101", "GSM213105", "GSM213106", "GSM213109", "GSM213110", "GSM213113", "GSM213121", "GSM213123", "GSM213124", "GSM213125" ], "type": "development stage", "id": "GDS3356_2" }, { "dataset_id": "GDS3356", "description": "control", "sample_id": [ "GSM213072", "GSM213076", "GSM213075", "GSM213078", "GSM213079", "GSM213080", "GSM213081", "GSM213082", "GSM213084", "GSM213085", "GSM213087", "GSM213088", "GSM213089", "GSM213090", "GSM213091", "GSM213092", "GSM213093", "GSM213096", "GSM213097", "GSM213099", "GSM213100", "GSM213101", "GSM213105", "GSM213109", "GSM213110", "GSM213111", "GSM213113", "GSM213117", "GSM213118", "GSM213120", "GSM213121", "GSM213122", "GSM213123", "GSM213125" ], "type": "disease state", "id": "GDS3356_3" }, { "dataset_id": "GDS3356", "description": "bronchopulmonary dysplasia", "sample_id": [ "GSM213073", "GSM213074", "GSM213077", "GSM213083", "GSM213086", "GSM213094", "GSM213095", "GSM213098", "GSM213102", "GSM213103", "GSM213104", "GSM213106", "GSM213107", "GSM213108", "GSM213112", "GSM213114", "GSM213115", "GSM213116", "GSM213119", "GSM213124" ], "type": "disease state", "id": "GDS3356_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3356", "version": 1.0, "instances": "54", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3356.tab", "compression": "gz" } ], [ [ "GDS3357.tab" ], { "title": "High dietary fat effect on small intestine: time course", "description": "Analysis of small intestines of male C57BL/6J rodents fed a powdered high-fat purified diet for up to 8 weeks. Diet contributes to obesity and insulin resistance (IR) development. Results provide insight into the molecular mechanisms underlying dietary fat-induced obesity and IR pathogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "18457598", "18356535" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE8582", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3357", "description": "2 weeks", "sample_id": [ "GSM213043", "GSM213045", "GSM213050", "GSM213051", "GSM213056", "GSM213057" ], "type": "time", "id": "GDS3357_1" }, { "dataset_id": "GDS3357", "description": "4 weeks", "sample_id": [ "GSM213046", "GSM213047", "GSM213052", "GSM213053", "GSM213058", "GSM213059" ], "type": "time", "id": "GDS3357_2" }, { "dataset_id": "GDS3357", "description": "8 weeks", "sample_id": [ "GSM213048", "GSM213049", "GSM213054", "GSM213055", "GSM213060", "GSM213061" ], "type": "time", "id": "GDS3357_3" }, { "dataset_id": "GDS3357", "description": "control", "sample_id": [ "GSM213043", "GSM213046", "GSM213048", "GSM213050", "GSM213052", "GSM213054", "GSM213056", "GSM213058", "GSM213060" ], "type": "agent", "id": "GDS3357_4" }, { "dataset_id": "GDS3357", "description": "high-fat diet", "sample_id": [ "GSM213045", "GSM213047", "GSM213049", "GSM213051", "GSM213053", "GSM213055", "GSM213057", "GSM213059", "GSM213061" ], "type": "agent", "id": "GDS3357_5" }, { "dataset_id": "GDS3357", "description": "proximal small intestine", "sample_id": [ "GSM213043", "GSM213045", "GSM213046", "GSM213047", "GSM213048", "GSM213049" ], "type": "tissue", "id": "GDS3357_6" }, { "dataset_id": "GDS3357", "description": "middle small intestine", "sample_id": [ "GSM213050", "GSM213051", "GSM213052", "GSM213053", "GSM213054", "GSM213055" ], "type": "tissue", "id": "GDS3357_7" }, { "dataset_id": "GDS3357", "description": "distal small intestine", "sample_id": [ "GSM213056", "GSM213057", "GSM213058", "GSM213059", "GSM213060", "GSM213061" ], "type": "tissue", "id": "GDS3357_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3357", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3357.tab", "compression": "gz" } ], [ [ "GDS3358.tab" ], { "title": "Androgen deprivation effect on LNCaP prostate cancer cells: time course", "description": "Analysis of cultured LNCaP prostate cancer cells during 12 months of androgen deprivation. Following androgen ablation therapy, most prostate cancer patients develop treatment resistance. Results provide insight into prostate cancer cell survival and androgen-independence.", "type": "Expression profiling by array", "pubmed_id": "18302219", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE8702", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3358", "description": "control", "sample_id": [ "GSM215632", "GSM215633", "GSM215636", "GSM215639", "GSM215642" ], "type": "growth protocol", "id": "GDS3358_1" }, { "dataset_id": "GDS3358", "description": "androgen-deprived", "sample_id": [ "GSM215634", "GSM215635", "GSM215637", "GSM215638", "GSM215640", "GSM215641", "GSM215643", "GSM215646", "GSM215645", "GSM215644" ], "type": "growth protocol", "id": "GDS3358_2" }, { "dataset_id": "GDS3358", "description": "0 weeks", "sample_id": [ "GSM215632" ], "type": "time", "id": "GDS3358_3" }, { "dataset_id": "GDS3358", "description": "3 weeks", "sample_id": [ "GSM215633", "GSM215634", "GSM215635" ], "type": "time", "id": "GDS3358_4" }, { "dataset_id": "GDS3358", "description": "1 month", "sample_id": [ "GSM215636", "GSM215637", "GSM215638" ], "type": "time", "id": "GDS3358_5" }, { "dataset_id": "GDS3358", "description": "5 months", "sample_id": [ "GSM215639", "GSM215640", "GSM215641" ], "type": "time", "id": "GDS3358_6" }, { "dataset_id": "GDS3358", "description": "11 months", "sample_id": [ "GSM215646", "GSM215645" ], "type": "time", "id": "GDS3358_7" }, { "dataset_id": "GDS3358", "description": "12 months", "sample_id": [ "GSM215642", "GSM215643", "GSM215644" ], "type": "time", "id": "GDS3358_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3358", "version": 1.0, "instances": "15", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3358.tab", "compression": "gz" } ], [ [ "GDS3360.tab" ], { "title": "Chlamydia pneumoniae infection effect on HL epithelial cells: time course", "description": "Analysis of the HL epithelial cell line at various time points up to 72 hours following Chlamydia pneumoniae infection. C. pneumonia is a common cause of respiratory infections such as pneumonia. Results provide insight into host-cell phenomena that are affected at the different stages of infection.", "type": "Expression profiling by array", "pubmed_id": "18171299", "platform": "GPL887", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE7246", "order": "none", "update_date": "Mar 10 2009", "subsets": [ { "dataset_id": "GDS3360", "description": "12 h", "sample_id": [ "GSM174713", "GSM174714" ], "type": "time", "id": "GDS3360_1" }, { "dataset_id": "GDS3360", "description": "24 h", "sample_id": [ "GSM174715", "GSM174716" ], "type": "time", "id": "GDS3360_2" }, { "dataset_id": "GDS3360", "description": "48 h", "sample_id": [ "GSM174717", "GSM174718" ], "type": "time", "id": "GDS3360_3" }, { "dataset_id": "GDS3360", "description": "72 h", "sample_id": [ "GSM174719", "GSM174720" ], "type": "time", "id": "GDS3360_4" } ], "taxid": "9606", "genes": 18355, "aggregation_function": "mean", "name": "GDS3360", "version": 1.0, "instances": "8", "variables": 18357, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3360.tab", "compression": "gz" } ], [ [ "GDS3361.tab" ], { "title": "Fibroblast growth factor-23 transgenic model", "description": "Analysis of kidneys from C57Bl transgenics expressing human fibroblast growth factor-23 (FGF23). FGF23 is a circulating protein that causes decreased renal inorganic phosphate (Pi) reabsorption. Results provide insight into molecular mechanisms underlying the regulation of Pi homeostasis by FGF23.", "type": "Expression profiling by array", "pubmed_id": "17911089", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE6979", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3361", "description": "wild type", "sample_id": [ "GSM160870", "GSM160872", "GSM160874", "GSM160877", "GSM160878" ], "type": "strain", "id": "GDS3361_1" }, { "dataset_id": "GDS3361", "description": "fibroblast growth factor-23 transgenic", "sample_id": [ "GSM160871", "GSM160873", "GSM160875", "GSM160876", "GSM160879" ], "type": "strain", "id": "GDS3361_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3361", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3361.tab", "compression": "gz" } ], [ [ "GDS3362.tab" ], { "title": "Atorvastatin treatment of familial combined hyperlipidemia: peripheral blood monocytes", "description": "Analysis of monocytes from male, familial combined hyperlipidemia (FCH) patients following 4 wks of treatment with atorvastatin, an HMG-CoA reductase inhibitor that slows the production of cholesterol. Results provide insight into molecular mechanisms underlying the pathogenesis of FCH.", "type": "Expression profiling by array", "pubmed_id": "18681780", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE11393", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3362", "description": "control", "sample_id": [ "GSM287664", "GSM287665", "GSM287666" ], "type": "disease state", "id": "GDS3362_1" }, { "dataset_id": "GDS3362", "description": "FCH", "sample_id": [ "GSM287667", "GSM287668", "GSM287669", "GSM287670", "GSM287671", "GSM287672" ], "type": "disease state", "id": "GDS3362_2" }, { "dataset_id": "GDS3362", "description": "none", "sample_id": [ "GSM287664", "GSM287665", "GSM287666", "GSM287667", "GSM287668", "GSM287669" ], "type": "agent", "id": "GDS3362_3" }, { "dataset_id": "GDS3362", "description": "atorvastatin", "sample_id": [ "GSM287670", "GSM287671", "GSM287672" ], "type": "agent", "id": "GDS3362_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3362", "version": 1.0, "instances": "9", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3362.tab", "compression": "gz" } ], [ [ "GDS3363.tab" ], { "title": "Airway epithelial cells response to hypochlorous acid: time course", "description": "Temporal analysis of primary airway epithelial cells (AEC) treated with 0.4, 1 or 4mM hypochlorous acid (HOCl). HOCl is a potent oxidative agent that can be generated by neutrophils in inflammatory diseases of airways. Results provide insight into mechanisms underlying HOCl-induced toxicity in AECs.", "type": "Expression profiling by array", "pubmed_id": "18156441", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE11630", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3363", "description": "control", "sample_id": [ "GSM245430", "GSM245432", "GSM245436", "GSM245440", "GSM245444", "GSM245448", "GSM245452", "GSM245456" ], "type": "dose", "id": "GDS3363_1" }, { "dataset_id": "GDS3363", "description": "0.4 mM", "sample_id": [ "GSM245427", "GSM245433", "GSM245437", "GSM245441", "GSM245445", "GSM245449", "GSM245453", "GSM245457" ], "type": "dose", "id": "GDS3363_2" }, { "dataset_id": "GDS3363", "description": "1 mM", "sample_id": [ "GSM245428", "GSM245434", "GSM245438", "GSM245442", "GSM245446", "GSM245450", "GSM245454", "GSM245458" ], "type": "dose", "id": "GDS3363_3" }, { "dataset_id": "GDS3363", "description": "4 mM", "sample_id": [ "GSM245429", "GSM245431", "GSM245435", "GSM245439", "GSM245443", "GSM245447", "GSM245451", "GSM245455" ], "type": "dose", "id": "GDS3363_4" }, { "dataset_id": "GDS3363", "description": "2 h", "sample_id": [ "GSM245433", "GSM245434", "GSM245435", "GSM245436", "GSM245441", "GSM245442", "GSM245443", "GSM245444", "GSM245445", "GSM245446", "GSM245447", "GSM245448", "GSM245453", "GSM245454", "GSM245455", "GSM245456" ], "type": "time", "id": "GDS3363_5" }, { "dataset_id": "GDS3363", "description": "6 h", "sample_id": [ "GSM245427", "GSM245428", "GSM245429", "GSM245430", "GSM245431", "GSM245432", "GSM245437", "GSM245438", "GSM245439", "GSM245440", "GSM245449", "GSM245450", "GSM245451", "GSM245452", "GSM245457", "GSM245458" ], "type": "time", "id": "GDS3363_6" }, { "dataset_id": "GDS3363", "description": "H421", "sample_id": [ "GSM245445", "GSM245446", "GSM245447", "GSM245448", "GSM245449", "GSM245450", "GSM245451", "GSM245452" ], "type": "individual", "id": "GDS3363_7" }, { "dataset_id": "GDS3363", "description": "H465", "sample_id": [ "GSM245431", "GSM245432", "GSM245453", "GSM245454", "GSM245455", "GSM245456", "GSM245457", "GSM245458" ], "type": "individual", "id": "GDS3363_8" }, { "dataset_id": "GDS3363", "description": "H510", "sample_id": [ "GSM245433", "GSM245434", "GSM245435", "GSM245436", "GSM245437", "GSM245438", "GSM245439", "GSM245440" ], "type": "individual", "id": "GDS3363_9" }, { "dataset_id": "GDS3363", "description": "H511", "sample_id": [ "GSM245427", "GSM245428", "GSM245429", "GSM245430", "GSM245441", "GSM245442", "GSM245443", "GSM245444" ], "type": "individual", "id": "GDS3363_10" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3363", "version": 1.0, "instances": "32", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3363.tab", "compression": "gz" } ], [ [ "GDS3364.tab" ], { "title": "Cell cycle of T98G glioblastoma cell line", "description": "Analysis of T98G cells in asynchronously growing state, after 72 hr of serum starvation to induce G0, or after serum restimulation to enter cell cycle. Results provide insight into mammalian cell-cycle gene regulation and mechanisms underlying repression of cell cycle dependent genes in quiescence.", "type": "Expression profiling by array", "pubmed_id": "17531812", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE8537", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS3364", "description": "asynchronous", "sample_id": [ "GSM211868" ], "type": "growth protocol", "id": "GDS3364_1" }, { "dataset_id": "GDS3364", "description": "S phase", "sample_id": [ "GSM211871" ], "type": "growth protocol", "id": "GDS3364_2" }, { "dataset_id": "GDS3364", "description": "G0 phase", "sample_id": [ "GSM211869" ], "type": "growth protocol", "id": "GDS3364_3" }, { "dataset_id": "GDS3364", "description": "G1 phase", "sample_id": [ "GSM211870" ], "type": "growth protocol", "id": "GDS3364_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3364", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3364.tab", "compression": "gz" } ], [ [ "GDS3365.tab" ], { "title": "Oxidative-stress induced neurodegeneration in Harlequin mutant: olfactory epithelium", "description": "Analysis of olfactory epithelium from Harlequin mutant, a model of oxidative stress (OS)-induced neurodegeneration. OS in the olfactory system is a major factor associated with age-related olfactory impairment. Results provide insight into the molecular basis of OS-associated olfactory aging.", "type": "Expression profiling by array", "pubmed_id": "17868149", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6485", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3365", "description": "Harlequin mutant", "sample_id": [ "GSM149360", "GSM149361", "GSM149362" ], "type": "genotype/variation", "id": "GDS3365_1" }, { "dataset_id": "GDS3365", "description": "control", "sample_id": [ "GSM149363", "GSM149364", "GSM149365" ], "type": "genotype/variation", "id": "GDS3365_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3365", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3365.tab", "compression": "gz" } ], [ [ "GDS3366.tab" ], { "title": "Neocortical and cerebellar astrocytes", "description": "Analysis of neocortical and cerebellar primary astrocyte cultures generated from postnatal day 1, wild-type (ICR) pups. Results provide insight into the molecular heterogeneity of astrocyte populations from different brain regions and its relevance to brain tumor formation.", "type": "Expression profiling by array", "pubmed_id": "17283119", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE5582", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3366", "description": "neocortical astrocytes", "sample_id": [ "GSM128874", "GSM130340", "GSM130361" ], "type": "cell type", "id": "GDS3366_1" }, { "dataset_id": "GDS3366", "description": "cerebellar astrocytes", "sample_id": [ "GSM130362", "GSM130363", "GSM130364" ], "type": "cell type", "id": "GDS3366_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3366", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3366.tab", "compression": "gz" } ], [ [ "GDS3367.tab" ], { "title": "Argyrin A effect on MCF7 breast cancer cells: time course", "description": "Temporal analysis of MCF7 breast adenocarcinoma cells treated with argyrin A, a proteasome inhibitor that induces apoptosis by stabilizing cyclin kinase inhibitor p27kip1. Results provide insight into the molecular mechanisms that make argyrin A-induced cell death dependent upon p27kip1 expression.", "type": "Expression profiling by array", "pubmed_id": "18598941", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE8565", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3367", "description": "argyrin A", "sample_id": [ "GSM212658", "GSM212659", "GSM212660", "GSM297801", "GSM297802", "GSM297804", "GSM297806" ], "type": "agent", "id": "GDS3367_1" }, { "dataset_id": "GDS3367", "description": "bortezomib", "sample_id": [ "GSM212655", "GSM212656", "GSM212657" ], "type": "agent", "id": "GDS3367_2" }, { "dataset_id": "GDS3367", "description": "siRNA against proteasome subunits", "sample_id": [ "GSM212662", "GSM212663", "GSM297805", "GSM297807" ], "type": "agent", "id": "GDS3367_3" }, { "dataset_id": "GDS3367", "description": "none", "sample_id": [ "GSM212654", "GSM212661", "GSM297803" ], "type": "agent", "id": "GDS3367_4" }, { "dataset_id": "GDS3367", "description": "12 hours", "sample_id": [ "GSM212662", "GSM297801", "GSM297804", "GSM297805" ], "type": "time", "id": "GDS3367_5" }, { "dataset_id": "GDS3367", "description": "14 hours", "sample_id": [ "GSM212655", "GSM212658" ], "type": "time", "id": "GDS3367_6" }, { "dataset_id": "GDS3367", "description": "24 hours", "sample_id": [ "GSM212656", "GSM212659", "GSM212663", "GSM297802", "GSM297806", "GSM297807" ], "type": "time", "id": "GDS3367_7" }, { "dataset_id": "GDS3367", "description": "48 hours", "sample_id": [ "GSM212657", "GSM212660" ], "type": "time", "id": "GDS3367_8" }, { "dataset_id": "GDS3367", "description": "control", "sample_id": [ "GSM212654", "GSM212661", "GSM297803" ], "type": "time", "id": "GDS3367_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3367", "version": 1.0, "instances": "17", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3367.tab", "compression": "gz" } ], [ [ "GDS3368.tab" ], { "title": "Ovaries from a high-fertility line", "description": "Analysis of ovaries from high-fertility FL1 animals. FL1 animals exhibit an increase in ovulation number. Results provide insight into the molecular basis of this increase in ovulation number.", "type": "Expression profiling by array", "pubmed_id": "18588666", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE11113", "order": "none", "update_date": "Dec 04 2012", "subsets": [ { "dataset_id": "GDS3368", "description": "FL1", "sample_id": [ "GSM280489", "GSM280490", "GSM280491", "GSM280492", "GSM280493", "GSM280494", "GSM280495", "GSM280496", "GSM280497", "GSM280498", "GSM280499", "GSM280500" ], "type": "strain", "id": "GDS3368_1" }, { "dataset_id": "GDS3368", "description": "control", "sample_id": [ "GSM280501", "GSM280502", "GSM280503", "GSM280504", "GSM280505", "GSM280506", "GSM280507", "GSM280508", "GSM280509", "GSM280510", "GSM280511", "GSM280512" ], "type": "strain", "id": "GDS3368_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3368", "version": 1.0, "instances": "24", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3368.tab", "compression": "gz" } ], [ [ "GDS3369.tab" ], { "title": "Zinc inhalation effect on the heart: dose response", "description": "Analysis of hearts of animals after subchronic exposure to zinc via nose only inhalation of aerosolized zinc sulfate (10, 30 or 100 ug zinc/m3), for 5 hours/day, 3 days/week for 16 weeks. Results provide insight into the effect of inhalation of zinc at environmentally relevant levels on the heart.", "type": "Expression profiling by array", "pubmed_id": "18601943", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE11091", "order": "none", "update_date": "Mar 05 2009", "subsets": [ { "dataset_id": "GDS3369", "description": "control", "sample_id": [ "GSM280163", "GSM280164", "GSM280165", "GSM280166", "GSM280167", "GSM280168" ], "type": "agent", "id": "GDS3369_1" }, { "dataset_id": "GDS3369", "description": "zinc", "sample_id": [ "GSM280169", "GSM280170", "GSM280171", "GSM280172", "GSM280173", "GSM280174", "GSM280175", "GSM280176", "GSM280177", "GSM280178", "GSM280179", "GSM280180", "GSM280181", "GSM280182", "GSM280183", "GSM280184", "GSM280185", "GSM280186" ], "type": "agent", "id": "GDS3369_2" }, { "dataset_id": "GDS3369", "description": "0 ug/m3", "sample_id": [ "GSM280163", "GSM280164", "GSM280165", "GSM280166", "GSM280167", "GSM280168" ], "type": "dose", "id": "GDS3369_3" }, { "dataset_id": "GDS3369", "description": "10 ug/m3", "sample_id": [ "GSM280169", "GSM280170", "GSM280171", "GSM280172", "GSM280173", "GSM280174" ], "type": "dose", "id": "GDS3369_4" }, { "dataset_id": "GDS3369", "description": "30 ug/m3", "sample_id": [ "GSM280175", "GSM280176", "GSM280177", "GSM280178", "GSM280179", "GSM280180" ], "type": "dose", "id": "GDS3369_5" }, { "dataset_id": "GDS3369", "description": "100 ug/m3", "sample_id": [ "GSM280181", "GSM280182", "GSM280183", "GSM280184", "GSM280185", "GSM280186" ], "type": "dose", "id": "GDS3369_6" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3369", "version": 1.0, "instances": "24", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3369.tab", "compression": "gz" } ], [ [ "GDS337.tab" ], { "title": "Telomerase overexpression", "description": "Effect of overexpression of the telomerase catalytic subunit (TERT) in mammary epithelial cells (HMEC). Findings imply that ectopic telomerase expression modulates growth-controlling genes and enhances cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "12717449", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE361", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS337", "description": "untransduced", "sample_id": [ "GSM5157", "GSM5158", "GSM5163", "GSM5164", "GSM5175", "GSM5176" ], "type": "cell line", "id": "GDS337_1" }, { "dataset_id": "GDS337", "description": "hTERT transduced", "sample_id": [ "GSM5159", "GSM5160", "GSM5165", "GSM5166", "GSM5169", "GSM5170", "GSM5172", "GSM5174" ], "type": "cell line", "id": "GDS337_2" }, { "dataset_id": "GDS337", "description": "empty pLXSN transduced", "sample_id": [ "GSM5161", "GSM5162" ], "type": "cell line", "id": "GDS337_3" }, { "dataset_id": "GDS337", "description": "empty pBabe transduced", "sample_id": [ "GSM5167", "GSM5168", "GSM5171", "GSM5173" ], "type": "cell line", "id": "GDS337_4" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS337", "version": 1.0, "instances": "20", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS337.tab", "compression": "gz" } ], [ [ "GDS3370.tab" ], { "title": "Staufen1 deletion effect on mRNA abundance in HeLa cells", "description": "Analysis of HeLa cells depleted of Staufen1 (Stau1). Stau1 is a double-stranded RNA-binding protein that mediates mRNA decay (SMD) and is utilized by mammalian cells to regulate gene expression. Results provide insight into additional mechanisms by which Stau1 may regulate mRNA abundance.", "type": "Expression profiling by array", "pubmed_id": "17510634", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE6679", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3370", "description": "control", "sample_id": [ "GSM154319", "GSM154355", "GSM154356" ], "type": "genotype/variation", "id": "GDS3370_1" }, { "dataset_id": "GDS3370", "description": "Stau1 depletion", "sample_id": [ "GSM154357", "GSM154358", "GSM154359" ], "type": "genotype/variation", "id": "GDS3370_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3370", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3370.tab", "compression": "gz" } ], [ [ "GDS3371.tab" ], { "title": "Laminin alpha2 chain deficiency effect on skeletal muscle", "description": "Analysis of hind limb skeletal muscle from 4-week old dy3K/dy3K animals, which completely lack expression of laminin \u03b12 chain. Mutations in the laminin alpha2 chain gene cause congenital muscular dystrophy type 1A (MDC1A). Results provide insight into molecular mechanisms underlying this disorder.", "type": "Expression profiling by array", "pubmed_id": "18611855", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12049", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3371", "description": "wild type", "sample_id": [ "GSM304403", "GSM304404", "GSM304405" ], "type": "genotype/variation", "id": "GDS3371_1" }, { "dataset_id": "GDS3371", "description": "dy3K/dy3K mutant", "sample_id": [ "GSM304406", "GSM304407", "GSM304408" ], "type": "genotype/variation", "id": "GDS3371_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3371", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3371.tab", "compression": "gz" } ], [ [ "GDS3373.tab" ], { "title": "Iron enriched and deficient diets effect on the liver", "description": "Analysis of livers of C57BL/6 and DBA/2 animals fed an iron enriched or deficient diet. Iron induces the production of hepcidin, a hepatic peptide hormone that regulates systemic iron homeostasis. Results provide insight into the molecular mechanisms regulating hepcidin expression.", "type": "Expression profiling by array", "pubmed_id": "18539898", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE10421", "order": "none", "update_date": "Mar 05 2009", "subsets": [ { "dataset_id": "GDS3373", "description": "C57BL/6", "sample_id": [ "GSM262762", "GSM262765", "GSM262768", "GSM262769", "GSM262770", "GSM262771", "GSM262772", "GSM262773", "GSM262794", "GSM262795", "GSM262796", "GSM262797", "GSM262798", "GSM262799", "GSM262800" ], "type": "strain", "id": "GDS3373_1" }, { "dataset_id": "GDS3373", "description": "DBA/2", "sample_id": [ "GSM262817", "GSM262819", "GSM262820", "GSM262839", "GSM262840", "GSM262841", "GSM262842", "GSM262843", "GSM262844", "GSM262845", "GSM262950", "GSM262951", "GSM262952", "GSM262953", "GSM262954" ], "type": "strain", "id": "GDS3373_2" }, { "dataset_id": "GDS3373", "description": "iron-balanced", "sample_id": [ "GSM262762", "GSM262765", "GSM262768", "GSM262769", "GSM262770", "GSM262817", "GSM262819", "GSM262820", "GSM262839", "GSM262840" ], "type": "protocol", "id": "GDS3373_3" }, { "dataset_id": "GDS3373", "description": "iron-deficient", "sample_id": [ "GSM262796", "GSM262797", "GSM262798", "GSM262799", "GSM262800", "GSM262950", "GSM262951", "GSM262952", "GSM262953", "GSM262954" ], "type": "protocol", "id": "GDS3373_4" }, { "dataset_id": "GDS3373", "description": "iron-enriched", "sample_id": [ "GSM262771", "GSM262772", "GSM262773", "GSM262794", "GSM262795", "GSM262841", "GSM262842", "GSM262843", "GSM262844", "GSM262845" ], "type": "protocol", "id": "GDS3373_5" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS3373", "version": 1.0, "instances": "30", "variables": 28103, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3373.tab", "compression": "gz" } ], [ [ "GDS3374.tab" ], { "title": "Retina response to optic nerve injury: time course", "description": "Temporal analysis of retinas of animals following intraorbital optic nerve transection (IONT) or intraorbital nerve crush (IONC). Optic nerve injury, which is more severe with IONT than IONC, triggers retinal ganglion cell death. Results provide insight into the molecular basis of this degeneration.", "type": "Expression profiling by array", "pubmed_id": "18552980", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE9918", "order": "none", "update_date": "Mar 05 2009", "subsets": [ { "dataset_id": "GDS3374", "description": "naive", "sample_id": [ "GSM250998", "GSM250999", "GSM251000", "GSM251001", "GSM251002" ], "type": "protocol", "id": "GDS3374_1" }, { "dataset_id": "GDS3374", "description": "transection", "sample_id": [ "GSM251003", "GSM251004", "GSM251005", "GSM251006", "GSM251007", "GSM251008", "GSM251009", "GSM251010", "GSM251011", "GSM251012", "GSM251013", "GSM251014", "GSM251015", "GSM251016", "GSM251017" ], "type": "protocol", "id": "GDS3374_2" }, { "dataset_id": "GDS3374", "description": "crush", "sample_id": [ "GSM251018", "GSM251019", "GSM251020", "GSM251021", "GSM251022", "GSM251023", "GSM251024", "GSM251025", "GSM251026", "GSM251027", "GSM251028", "GSM251029", "GSM251030", "GSM251031", "GSM251032" ], "type": "protocol", "id": "GDS3374_3" }, { "dataset_id": "GDS3374", "description": "control", "sample_id": [ "GSM250998", "GSM250999", "GSM251000", "GSM251001", "GSM251002" ], "type": "time", "id": "GDS3374_4" }, { "dataset_id": "GDS3374", "description": "12 h", "sample_id": [ "GSM251003", "GSM251004", "GSM251005", "GSM251018", "GSM251019", "GSM251020" ], "type": "time", "id": "GDS3374_5" }, { "dataset_id": "GDS3374", "description": "24 h", "sample_id": [ "GSM251006", "GSM251007", "GSM251021", "GSM251022", "GSM251023" ], "type": "time", "id": "GDS3374_6" }, { "dataset_id": "GDS3374", "description": "48 h", "sample_id": [ "GSM251008", "GSM251009", "GSM251010", "GSM251024", "GSM251025", "GSM251026" ], "type": "time", "id": "GDS3374_7" }, { "dataset_id": "GDS3374", "description": "3 d", "sample_id": [ "GSM251011", "GSM251012", "GSM251027", "GSM251028", "GSM251029" ], "type": "time", "id": "GDS3374_8" }, { "dataset_id": "GDS3374", "description": "7 d", "sample_id": [ "GSM251013", "GSM251014", "GSM251015", "GSM251030", "GSM251031", "GSM251032" ], "type": "time", "id": "GDS3374_9" }, { "dataset_id": "GDS3374", "description": "15 d", "sample_id": [ "GSM251016", "GSM251017" ], "type": "time", "id": "GDS3374_10" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3374", "version": 1.0, "instances": "35", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3374.tab", "compression": "gz" } ], [ [ "GDS3375.tab" ], { "title": "Visual cortex during the critical period for ocular dominance (MG-U74A)", "description": "Analysis of visual cortices before the critical period for ocular dominance plasticity opens [postnatal day 14 (P14)], at the peak sensitivity of the critical period (P28), and after the critical period (P60). Results provide insight into the molecular mechanisms associated with the critical period.", "type": "Expression profiling by array", "pubmed_id": "18606990", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE11764", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3375", "description": "14 d", "sample_id": [ "GSM297907", "GSM297910", "GSM297913" ], "type": "age", "id": "GDS3375_1" }, { "dataset_id": "GDS3375", "description": "28 d", "sample_id": [ "GSM297916", "GSM297919", "GSM297922" ], "type": "age", "id": "GDS3375_2" }, { "dataset_id": "GDS3375", "description": "60 d", "sample_id": [ "GSM297925", "GSM297928", "GSM297931", "GSM297934" ], "type": "age", "id": "GDS3375_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3375", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3375.tab", "compression": "gz" } ], [ [ "GDS3376.tab" ], { "title": "Visual cortex during the critical period for ocular dominance (MG-U74B)", "description": "Analysis of visual cortices before the critical period for ocular dominance plasticity opens [postnatal day 14 (P14)], at the peak sensitivity of the critical period (P28), and after the critical period (P60). Results provide insight into the molecular mechanisms associated with the critical period.", "type": "Expression profiling by array", "pubmed_id": "18606990", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE11764", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3376", "description": "14 d", "sample_id": [ "GSM297908", "GSM297911", "GSM297914" ], "type": "age", "id": "GDS3376_1" }, { "dataset_id": "GDS3376", "description": "28 d", "sample_id": [ "GSM297917", "GSM297920", "GSM297923" ], "type": "age", "id": "GDS3376_2" }, { "dataset_id": "GDS3376", "description": "60 d", "sample_id": [ "GSM297926", "GSM297929", "GSM297932", "GSM297935" ], "type": "age", "id": "GDS3376_3" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS3376", "version": 1.0, "instances": "10", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3376.tab", "compression": "gz" } ], [ [ "GDS3379.tab" ], { "title": "Norflurazon effect on whole seedlings", "description": "Analysis of 5-day-old, light-grown gun1-9 and gun5 mutant whole seedlings treated with norflurazon, an inhibitor of chloroplast development. GUN1 and GUN5 are involved in plastid-to-nucleus retrograde signaling. Results provide insight into nuclear genes under the control of retrograde pathways.", "type": "Expression profiling by array", "pubmed_id": "17395793", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE12887", "order": "none", "update_date": "Oct 15 2008", "subsets": [ { "dataset_id": "GDS3379", "description": "wild-type", "sample_id": [ "GSM323075", "GSM323076", "GSM323077", "GSM323078", "GSM323079", "GSM323080" ], "type": "genotype/variation", "id": "GDS3379_1" }, { "dataset_id": "GDS3379", "description": "gun1-9 mutant", "sample_id": [ "GSM323081", "GSM323082", "GSM323083", "GSM323084", "GSM323085", "GSM323086" ], "type": "genotype/variation", "id": "GDS3379_2" }, { "dataset_id": "GDS3379", "description": "gun5 mutant", "sample_id": [ "GSM323087", "GSM323088", "GSM323089", "GSM323090", "GSM323091", "GSM323092" ], "type": "genotype/variation", "id": "GDS3379_3" }, { "dataset_id": "GDS3379", "description": "control", "sample_id": [ "GSM323075", "GSM323076", "GSM323077", "GSM323081", "GSM323082", "GSM323083", "GSM323087", "GSM323088", "GSM323089" ], "type": "agent", "id": "GDS3379_4" }, { "dataset_id": "GDS3379", "description": "norflurazon", "sample_id": [ "GSM323078", "GSM323079", "GSM323080", "GSM323084", "GSM323085", "GSM323086", "GSM323090", "GSM323091", "GSM323092" ], "type": "agent", "id": "GDS3379_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3379", "version": 1.0, "instances": "18", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3379.tab", "compression": "gz" } ], [ [ "GDS3382.tab" ], { "title": "Visual cortex during the critical period for ocular dominance (MG-U74C)", "description": "Analysis of visual cortices before the critical period for ocular dominance plasticity opens [postnatal day 14 (P14)], at the peak sensitivity of the critical period (P28), and after the critical period (P60). Results provide insight into the molecular mechanisms associated with the critical period.", "type": "Expression profiling by array", "pubmed_id": "18606990", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE11764", "order": "none", "update_date": "Mar 06 2009", "subsets": [ { "dataset_id": "GDS3382", "description": "14 d", "sample_id": [ "GSM297909", "GSM297912", "GSM297915" ], "type": "age", "id": "GDS3382_1" }, { "dataset_id": "GDS3382", "description": "28 d", "sample_id": [ "GSM297918", "GSM297921", "GSM297924" ], "type": "age", "id": "GDS3382_2" }, { "dataset_id": "GDS3382", "description": "60 d", "sample_id": [ "GSM297927", "GSM297930", "GSM297933", "GSM297936" ], "type": "age", "id": "GDS3382_3" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS3382", "version": 1.0, "instances": "10", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3382.tab", "compression": "gz" } ], [ [ "GDS3383.tab" ], { "title": "Chronic stress effect on peripheral blood monocytes", "description": "Analysis of peripheral blood monocytes from individuals experiencing chronic stress due to being caregivers of family members with malignant brain cancer. Chronic stressors increase vulnerability to medical illness. Results provide insight into molecular mechanisms underlying this phenomenon.", "type": "Expression profiling by array", "pubmed_id": "18440494", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE7893", "order": "none", "update_date": "Mar 13 2009", "subsets": [ { "dataset_id": "GDS3383", "description": "chronic stress", "sample_id": [ "GSM194153", "GSM194154", "GSM194155", "GSM194156", "GSM194157", "GSM194158", "GSM194159", "GSM194160", "GSM194161", "GSM194162", "GSM194163" ], "type": "stress", "id": "GDS3383_1" }, { "dataset_id": "GDS3383", "description": "control", "sample_id": [ "GSM194164", "GSM194165", "GSM194166", "GSM194167", "GSM194168", "GSM194169", "GSM194170", "GSM194171", "GSM194172", "GSM194173" ], "type": "stress", "id": "GDS3383_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3383", "version": 1.0, "instances": "21", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3383.tab", "compression": "gz" } ], [ [ "GDS3384.tab" ], { "title": "Cyclooxygenase-2 inhibitor celecoxib effect on colorectal adenocarcinoma", "description": "Analysis of colorectal adenocarcinomas resected from patients treated with celecoxib for 7 days. Celecoxib is a cycooxygenase-2 inibitor that exhibits anti-cancer activity. Results provide insight into the mechanism of action of celecoxib in vivo.", "type": "Expression profiling by array", "pubmed_id": "18653328", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE11237", "order": "none", "update_date": "Nov 25 2009", "subsets": [ { "dataset_id": "GDS3384", "description": "celecoxib", "sample_id": [ "GSM283127", "GSM283129", "GSM283132", "GSM283134", "GSM283135", "GSM283136", "GSM283138", "GSM283142", "GSM283145", "GSM283147", "GSM283148" ], "type": "agent", "id": "GDS3384_1" }, { "dataset_id": "GDS3384", "description": "control", "sample_id": [ "GSM283128", "GSM283130", "GSM283131", "GSM283133", "GSM283137", "GSM283139", "GSM283140", "GSM283141", "GSM283143", "GSM283144", "GSM283146", "GSM283149" ], "type": "agent", "id": "GDS3384_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3384", "version": 1.0, "instances": "23", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3384.tab", "compression": "gz" } ], [ [ "GDS3385.tab" ], { "title": "Transcription factor STAT5b deficiency effect on the colon", "description": "Analysis of colons of animals lacking the Signal Transducers and Activators of Transcription member STAT5b. STAT5b mutants are more susceptible to experimental colitis, associated with intestinal barrier function defects. Results provide insight into the role of STAT5b in colonic barrier function.", "type": "Expression profiling by array", "pubmed_id": "18687707", "platform": "GPL5759", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "26180", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE8942", "order": "none", "update_date": "Sep 08 2009", "subsets": [ { "dataset_id": "GDS3385", "description": "wild type", "sample_id": [ "GSM226752", "GSM226753", "GSM226757", "GSM226758", "GSM226759" ], "type": "genotype/variation", "id": "GDS3385_1" }, { "dataset_id": "GDS3385", "description": "STAT5b null", "sample_id": [ "GSM226754", "GSM226755", "GSM226756" ], "type": "genotype/variation", "id": "GDS3385_2" } ], "taxid": "10090", "genes": 22927, "aggregation_function": "mean", "name": "GDS3385", "version": 1.0, "instances": "8", "variables": 22929, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3385.tab", "compression": "gz" } ], [ [ "GDS3386.tab" ], { "title": "Heart failure progression model: non-infarcted ventricular tissue", "description": "Analysis of non-infarcted left ventricular tissues from animals at various time points up to 14 days following myocardial infarction (MI). MI induced by ligating the left coronary artery. Results provide insight into the molecular pathogenesis of heart failure.", "type": "Expression profiling by array", "pubmed_id": "18585734", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "20", "value_type": "log2 ratio", "reference_series": "GSE6580", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3386", "description": "3 d", "sample_id": [ "GSM149851", "GSM149854", "GSM149855", "GSM149861", "GSM149862" ], "type": "time", "id": "GDS3386_1" }, { "dataset_id": "GDS3386", "description": "5 d", "sample_id": [ "GSM149863", "GSM149864", "GSM149865", "GSM149866", "GSM152120" ], "type": "time", "id": "GDS3386_2" }, { "dataset_id": "GDS3386", "description": "7 d", "sample_id": [ "GSM149867", "GSM149868", "GSM149869", "GSM149870", "GSM152121" ], "type": "time", "id": "GDS3386_3" }, { "dataset_id": "GDS3386", "description": "14 d", "sample_id": [ "GSM149871", "GSM149872", "GSM149873", "GSM149874", "GSM152123" ], "type": "time", "id": "GDS3386_4" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS3386", "version": 1.0, "instances": "20", "variables": 19520, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3386.tab", "compression": "gz" } ], [ [ "GDS3387.tab" ], { "title": "Chromatin remodeling component BAF250a deficiency effect on embryonic stem cells in vitro", "description": "Analysis of embryonic stem (ES) cells deleted for BAF250a in vitro. BAF250 is a component of the BAF chromatin remodeling complex. Results provide insight into the role of BAF250a in ES cell self-renewal and differentiation.", "type": "Expression profiling by array", "pubmed_id": "18448678", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10553", "order": "none", "update_date": "Sep 29 2008", "subsets": [ { "dataset_id": "GDS3387", "description": "wild type", "sample_id": [ "GSM266063" ], "type": "genotype/variation", "id": "GDS3387_1" }, { "dataset_id": "GDS3387", "description": "homozygous null", "sample_id": [ "GSM266062", "GSM266061" ], "type": "genotype/variation", "id": "GDS3387_2" }, { "dataset_id": "GDS3387", "description": "heterozygous null", "sample_id": [ "GSM266064" ], "type": "genotype/variation", "id": "GDS3387_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3387", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3387.tab", "compression": "gz" } ], [ [ "GDS3388.tab" ], { "title": "Bisphenol A effect on nonmalignant breast epithelial cell aspirates from breast cancer patients", "description": "Analysis of random periareolar fine-needle aspirates collected from unafflicted, contralateral breast tissue of breast cancer patients and treated with bisphenol A (BPA). BPA is a prevalent xenoestrogen. Results provide insight into early molecular events induced by BPA in susceptible breast tissue.", "type": "Expression profiling by array", "pubmed_id": "18381411", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE10270", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3388", "description": "17-beta-estradiol", "sample_id": [ "GSM259339", "GSM259345", "GSM259359", "GSM259365", "GSM259377", "GSM259386", "GSM259392", "GSM259395" ], "type": "agent", "id": "GDS3388_1" }, { "dataset_id": "GDS3388", "description": "17-beta-estradiol + progesterone", "sample_id": [ "GSM259341", "GSM259346", "GSM259360", "GSM259367", "GSM259378", "GSM259387", "GSM259393", "GSM259396" ], "type": "agent", "id": "GDS3388_2" }, { "dataset_id": "GDS3388", "description": "17-beta-estradiol + progesterone + bisphenol A", "sample_id": [ "GSM259342", "GSM259349", "GSM259361", "GSM259368", "GSM259379", "GSM259388", "GSM259394", "GSM259397" ], "type": "agent", "id": "GDS3388_3" }, { "dataset_id": "GDS3388", "description": "patient PA4", "sample_id": [ "GSM259339", "GSM259341", "GSM259342" ], "type": "individual", "id": "GDS3388_4" }, { "dataset_id": "GDS3388", "description": "patient PA7", "sample_id": [ "GSM259345", "GSM259346", "GSM259349" ], "type": "individual", "id": "GDS3388_5" }, { "dataset_id": "GDS3388", "description": "patient PA12", "sample_id": [ "GSM259359", "GSM259360", "GSM259361" ], "type": "individual", "id": "GDS3388_6" }, { "dataset_id": "GDS3388", "description": "patient PA13", "sample_id": [ "GSM259365", "GSM259367", "GSM259368" ], "type": "individual", "id": "GDS3388_7" }, { "dataset_id": "GDS3388", "description": "patient PA16", "sample_id": [ "GSM259377", "GSM259378", "GSM259379" ], "type": "individual", "id": "GDS3388_8" }, { "dataset_id": "GDS3388", "description": "patient PA18", "sample_id": [ "GSM259386", "GSM259387", "GSM259388" ], "type": "individual", "id": "GDS3388_9" }, { "dataset_id": "GDS3388", "description": "patient PA19", "sample_id": [ "GSM259392", "GSM259393", "GSM259394" ], "type": "individual", "id": "GDS3388_10" }, { "dataset_id": "GDS3388", "description": "patient PA20", "sample_id": [ "GSM259395", "GSM259396", "GSM259397" ], "type": "individual", "id": "GDS3388_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3388", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3388.tab", "compression": "gz" } ], [ [ "GDS339.tab" ], { "title": "Spinal cord injury and regeneration time course: at T9 (RG-U34C)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord at thoracic vertebrae T9 at various time points up to 28 days post injury. Mild, moderate and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "75", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS339", "description": "control", "sample_id": [ "GSM31511", "GSM31512", "GSM31266", "GSM6674", "GSM6675", "GSM6672", "GSM6673", "GSM31260", "GSM31265", "GSM31510", "GSM6676", "GSM6677", "GSM31251", "GSM31256" ], "type": "protocol", "id": "GDS339_1" }, { "dataset_id": "GDS339", "description": "mild injury", "sample_id": [ "GSM31224", "GSM6664", "GSM6665", "GSM6666", "GSM6667", "GSM6662", "GSM6663", "GSM6660", "GSM6661", "GSM6668", "GSM6669", "GSM6670", "GSM6671", "GSM31201" ], "type": "protocol", "id": "GDS339_2" }, { "dataset_id": "GDS339", "description": "moderate injury", "sample_id": [ "GSM31562", "GSM31559", "GSM31567", "GSM31569", "GSM31518", "GSM31520", "GSM31519", "GSM31528", "GSM31532", "GSM31534", "GSM31537", "GSM31548", "GSM31556", "GSM31566", "GSM31564", "GSM31578", "GSM31575", "GSM31586", "GSM31587", "GSM31585", "GSM31589", "GSM31594", "GSM31593", "GSM31527", "GSM31545", "GSM31547", "GSM31546", "GSM31554" ], "type": "protocol", "id": "GDS339_3" }, { "dataset_id": "GDS339", "description": "severe injury", "sample_id": [ "GSM7580", "GSM7583", "GSM7586", "GSM7589", "GSM7568", "GSM7571", "GSM7574", "GSM7577", "GSM7592", "GSM7595", "GSM7598", "GSM7601", "GSM31590", "GSM31614", "GSM31613", "GSM31609", "GSM31600", "GSM31601", "GSM31602" ], "type": "protocol", "id": "GDS339_4" }, { "dataset_id": "GDS339", "description": "0 h", "sample_id": [ "GSM31511", "GSM31512" ], "type": "time", "id": "GDS339_5" }, { "dataset_id": "GDS339", "description": "0.5 h", "sample_id": [ "GSM31266", "GSM31224" ], "type": "time", "id": "GDS339_6" }, { "dataset_id": "GDS339", "description": "4 h", "sample_id": [ "GSM6674", "GSM6675", "GSM6664", "GSM6665", "GSM6666", "GSM6667", "GSM31562", "GSM31559", "GSM31567", "GSM31569", "GSM7580", "GSM7583", "GSM7586", "GSM7589" ], "type": "time", "id": "GDS339_7" }, { "dataset_id": "GDS339", "description": "0.5 d", "sample_id": [ "GSM31518", "GSM31520", "GSM31519", "GSM31528" ], "type": "time", "id": "GDS339_8" }, { "dataset_id": "GDS339", "description": "1 d", "sample_id": [ "GSM6672", "GSM6673", "GSM6662", "GSM6663", "GSM6660", "GSM6661", "GSM31532", "GSM31534", "GSM31537", "GSM7568", "GSM7571", "GSM7574", "GSM7577" ], "type": "time", "id": "GDS339_9" }, { "dataset_id": "GDS339", "description": "2 d", "sample_id": [ "GSM31260", "GSM31265", "GSM31548", "GSM31556", "GSM31566", "GSM31564" ], "type": "time", "id": "GDS339_10" }, { "dataset_id": "GDS339", "description": "3 d", "sample_id": [ "GSM31510", "GSM31578", "GSM31575", "GSM31586", "GSM31587" ], "type": "time", "id": "GDS339_11" }, { "dataset_id": "GDS339", "description": "7 d", "sample_id": [ "GSM6676", "GSM6677", "GSM6668", "GSM6669", "GSM6670", "GSM6671", "GSM31585", "GSM31589", "GSM31594", "GSM31593", "GSM7592", "GSM7595", "GSM7598", "GSM7601" ], "type": "time", "id": "GDS339_12" }, { "dataset_id": "GDS339", "description": "14 d", "sample_id": [ "GSM31251", "GSM31256", "GSM31201", "GSM31590", "GSM31614", "GSM31613" ], "type": "time", "id": "GDS339_13" }, { "dataset_id": "GDS339", "description": "21 d", "sample_id": [ "GSM31527" ], "type": "time", "id": "GDS339_14" }, { "dataset_id": "GDS339", "description": "28 d", "sample_id": [ "GSM31545", "GSM31547", "GSM31546", "GSM31554", "GSM31609", "GSM31600", "GSM31601", "GSM31602" ], "type": "time", "id": "GDS339_15" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS339", "version": 1.0, "instances": "75", "variables": 7585, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS339.tab", "compression": "gz" } ], [ [ "GDS3392.tab" ], { "title": "Newborn intestinal tissues response to Shigella flexineri infection", "description": "Analysis of intestinal tissues from 4- or 7-day-old animals infected with Shigella flexineri strains for 2 or 4 hr. Animals >1 wk old are no longer susceptible to infection by Shigella. Results provide insight into the molecular basis of the switch from disease susceptibility to resistance.", "type": "Expression profiling by array", "pubmed_id": "18354217", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE9785", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3392", "description": "4 days", "sample_id": [ "GSM247078", "GSM247079", "GSM247080", "GSM247081", "GSM247086", "GSM247087", "GSM247088", "GSM247089", "GSM247093", "GSM247094", "GSM247095", "GSM247100", "GSM247101", "GSM247102", "GSM247103", "GSM247108", "GSM247109", "GSM247110", "GSM247111" ], "type": "age", "id": "GDS3392_1" }, { "dataset_id": "GDS3392", "description": "7 days", "sample_id": [ "GSM247082", "GSM247083", "GSM247084", "GSM247085", "GSM247090", "GSM247091", "GSM247092", "GSM247096", "GSM247097", "GSM247098", "GSM247099", "GSM247105", "GSM247106", "GSM247107", "GSM247112", "GSM247113", "GSM247114" ], "type": "age", "id": "GDS3392_2" }, { "dataset_id": "GDS3392", "description": "control", "sample_id": [ "GSM247078", "GSM247079", "GSM247080", "GSM247081", "GSM247082", "GSM247083", "GSM247084", "GSM247085" ], "type": "infection", "id": "GDS3392_3" }, { "dataset_id": "GDS3392", "description": "Shigella flexineri BS176", "sample_id": [ "GSM247086", "GSM247087", "GSM247088", "GSM247089", "GSM247090", "GSM247091", "GSM247092", "GSM247100", "GSM247101", "GSM247102", "GSM247103", "GSM247105", "GSM247106", "GSM247107" ], "type": "infection", "id": "GDS3392_4" }, { "dataset_id": "GDS3392", "description": "Shigella flexineri M90T", "sample_id": [ "GSM247093", "GSM247094", "GSM247095", "GSM247096", "GSM247097", "GSM247098", "GSM247099", "GSM247108", "GSM247109", "GSM247110", "GSM247111", "GSM247112", "GSM247113", "GSM247114" ], "type": "infection", "id": "GDS3392_5" }, { "dataset_id": "GDS3392", "description": "0 h", "sample_id": [ "GSM247078", "GSM247079", "GSM247080", "GSM247081", "GSM247082", "GSM247083", "GSM247084", "GSM247085" ], "type": "time", "id": "GDS3392_6" }, { "dataset_id": "GDS3392", "description": "2 h", "sample_id": [ "GSM247086", "GSM247087", "GSM247088", "GSM247089", "GSM247090", "GSM247091", "GSM247092", "GSM247093", "GSM247094", "GSM247095", "GSM247096", "GSM247097", "GSM247098", "GSM247099" ], "type": "time", "id": "GDS3392_7" }, { "dataset_id": "GDS3392", "description": "4 h", "sample_id": [ "GSM247100", "GSM247101", "GSM247102", "GSM247103", "GSM247105", "GSM247106", "GSM247107", "GSM247108", "GSM247109", "GSM247110", "GSM247111", "GSM247112", "GSM247113", "GSM247114" ], "type": "time", "id": "GDS3392_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3392", "version": 1.0, "instances": "36", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3392.tab", "compression": "gz" } ], [ [ "GDS3393.tab" ], { "title": "Bronchial epithelial cells response to interleukin-22 and interleukin-17", "description": "Analysis of bronchial epithelial cells treated with interleukin (IL)-22, IL-17, or both. IL-17 receptor mutant lungs are susceptible to Klebsiella pneumonia infections. IL-22 induces antimicrobial peptide expression. Results provide insight into the extent of IL-22 and IL-17's role in host defense.", "type": "Expression profiling by array", "pubmed_id": "18264110", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE10240", "order": "none", "update_date": "Mar 30 2009", "subsets": [ { "dataset_id": "GDS3393", "description": "control", "sample_id": [ "GSM258518", "GSM258522", "GSM258526" ], "type": "agent", "id": "GDS3393_1" }, { "dataset_id": "GDS3393", "description": "interleukin-22", "sample_id": [ "GSM258519", "GSM258523", "GSM258527" ], "type": "agent", "id": "GDS3393_2" }, { "dataset_id": "GDS3393", "description": "interleukin-17", "sample_id": [ "GSM258520", "GSM258524", "GSM258528" ], "type": "agent", "id": "GDS3393_3" }, { "dataset_id": "GDS3393", "description": "interleukin-22 + interleukin-17", "sample_id": [ "GSM258521", "GSM258525", "GSM258529" ], "type": "agent", "id": "GDS3393_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3393", "version": 1.0, "instances": "12", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3393.tab", "compression": "gz" } ], [ [ "GDS3394.tab" ], { "title": "Brassinazole effect on arf2 mutant seedlings", "description": "Analysis of etiolated, auxin response factor 2 (arf2) mutant seedlings grown on brassinazole, a type of brassinosteroid hormone (BR). ARF2 is required for normal BR response. Results provide insight into the convergence of the brassinosteroid and auxin signalling pathways at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "18599455", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE11216", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3394", "description": "arf2 mutant", "sample_id": [ "GSM282693", "GSM282694", "GSM282695", "GSM282696", "GSM282703" ], "type": "genotype/variation", "id": "GDS3394_1" }, { "dataset_id": "GDS3394", "description": "wild type", "sample_id": [ "GSM282697", "GSM282698", "GSM282699", "GSM282700", "GSM282701", "GSM282702" ], "type": "genotype/variation", "id": "GDS3394_2" }, { "dataset_id": "GDS3394", "description": "control", "sample_id": [ "GSM282694", "GSM282695", "GSM282696", "GSM282700", "GSM282701", "GSM282702" ], "type": "agent", "id": "GDS3394_3" }, { "dataset_id": "GDS3394", "description": "brassinazole", "sample_id": [ "GSM282693", "GSM282697", "GSM282698", "GSM282699", "GSM282703" ], "type": "agent", "id": "GDS3394_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3394", "version": 1.0, "instances": "11", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3394.tab", "compression": "gz" } ], [ [ "GDS3395.tab" ], { "title": "Aquaporin-11 deficiency effect on the kidney", "description": "Analysis of kidneys of 1 week old animals lacking aquaporin-11 (AQP11). AQP11 null mutants develop polycystic kidneys. Results provide insight into the molecular basis of cyst formation in kidneys of AQP11 mutants.", "type": "Expression profiling by array", "pubmed_id": "18606867", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE10634", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3395", "description": "control", "sample_id": [ "GSM267980", "GSM267982", "GSM267983", "GSM267986", "GSM267990", "GSM267991", "GSM267994" ], "type": "genotype/variation", "id": "GDS3395_1" }, { "dataset_id": "GDS3395", "description": "AQP11 null", "sample_id": [ "GSM267981", "GSM267984", "GSM267985", "GSM267987", "GSM267988", "GSM267989", "GSM267992", "GSM267993", "GSM267995" ], "type": "genotype/variation", "id": "GDS3395_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3395", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3395.tab", "compression": "gz" } ], [ [ "GDS3396.tab" ], { "title": "Rosiglitazone effect on kidneys", "description": "Analysis of kidneys from lean and obese animals fed a diet supplemented with rosiglitazone for 12 weeks. Rosiglitazone is a thiazolidinedione drug used to treat diabetes. Results provide insight into the mechanism of action of rosiglitazone.", "type": "Expression profiling by array", "pubmed_id": "18700276", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7193", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3396", "description": "lean", "sample_id": [ "GSM172979", "GSM172980", "GSM172981", "GSM172982", "GSM172983", "GSM172984" ], "type": "disease state", "id": "GDS3396_1" }, { "dataset_id": "GDS3396", "description": "obese", "sample_id": [ "GSM172985", "GSM172986", "GSM172987", "GSM172988", "GSM172989", "GSM172990" ], "type": "disease state", "id": "GDS3396_2" }, { "dataset_id": "GDS3396", "description": "control", "sample_id": [ "GSM172979", "GSM172980", "GSM172981", "GSM172987", "GSM172989", "GSM172990" ], "type": "agent", "id": "GDS3396_3" }, { "dataset_id": "GDS3396", "description": "rosiglitazone", "sample_id": [ "GSM172982", "GSM172983", "GSM172984", "GSM172985", "GSM172986", "GSM172988" ], "type": "agent", "id": "GDS3396_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3396", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3396.tab", "compression": "gz" } ], [ [ "GDS3397.tab" ], { "title": "Dent disease model: renal proximal tubules", "description": "Analysis of renal proximal tubules dissected from CLCN5 deficient animals, a model for Dent disease. Clcn5 is a chloride/protein exchanger expressed in renal tubules. Results provide insight into the molecular pathophysiology of Dent disease.", "type": "Expression profiling by array", "pubmed_id": "18349385", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10162", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3397", "description": "wild type", "sample_id": [ "GSM256959", "GSM256960", "GSM256961" ], "type": "genotype/variation", "id": "GDS3397_1" }, { "dataset_id": "GDS3397", "description": "CLCN5 null", "sample_id": [ "GSM256956", "GSM256957", "GSM256958" ], "type": "genotype/variation", "id": "GDS3397_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3397", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3397.tab", "compression": "gz" } ], [ [ "GDS3398.tab" ], { "title": "Utrophin overexpression effect on dystrophin-deficient mdx skeletal muscles", "description": "Analysis of skeletal muscles from dystrophin-deficient mdx trangenics engineered to overexpress utrophin, a dystrophin-related protein. Dystrophin mutations result in Duchenne muscular dystrophy. mdx trangenics overexpressing utrophin display improved muscle function.", "type": "Expression profiling by array", "pubmed_id": "18343112", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE7187", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3398", "description": "wild type", "sample_id": [ "GSM172910", "GSM172911", "GSM172912", "GSM172913", "GSM172914", "GSM172915" ], "type": "strain", "id": "GDS3398_1" }, { "dataset_id": "GDS3398", "description": "mdx", "sample_id": [ "GSM172904", "GSM172905", "GSM172906", "GSM172907", "GSM172908", "GSM172909" ], "type": "strain", "id": "GDS3398_2" }, { "dataset_id": "GDS3398", "description": "utrophin overexpressing", "sample_id": [ "GSM172899", "GSM172900", "GSM172901", "GSM172902", "GSM172903" ], "type": "strain", "id": "GDS3398_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3398", "version": 1.0, "instances": "17", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3398.tab", "compression": "gz" } ], [ [ "GDS3399.tab" ], { "title": "Staphylococcal superantigen toxins effect on peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells treated with the recombinant staphylococcal superantigen (SAg) toxin SEI or SEB. SEI is located in the enterotoxin gene cluster (egc). Antibodies against non-egc SAgs are common in the healthy population, while those against egc SAgs are rare.", "type": "Expression profiling by array", "pubmed_id": "18802109", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE11281", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3399", "description": "donor 1", "sample_id": [ "GSM284858", "GSM284859", "GSM284860" ], "type": "individual", "id": "GDS3399_1" }, { "dataset_id": "GDS3399", "description": "donor 2", "sample_id": [ "GSM284861", "GSM284862", "GSM284863" ], "type": "individual", "id": "GDS3399_2" }, { "dataset_id": "GDS3399", "description": "donor 3", "sample_id": [ "GSM284864", "GSM284865", "GSM284866" ], "type": "individual", "id": "GDS3399_3" }, { "dataset_id": "GDS3399", "description": "control", "sample_id": [ "GSM284858", "GSM284861", "GSM284864" ], "type": "agent", "id": "GDS3399_4" }, { "dataset_id": "GDS3399", "description": "SEI", "sample_id": [ "GSM284859", "GSM284862", "GSM284865" ], "type": "agent", "id": "GDS3399_5" }, { "dataset_id": "GDS3399", "description": "SEB", "sample_id": [ "GSM284860", "GSM284863", "GSM284866" ], "type": "agent", "id": "GDS3399_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3399", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3399.tab", "compression": "gz" } ], [ [ "GDS34.tab" ], { "title": "Heat shock from 37\u00b0C to 25\u00b0C time course", "description": "Heat shock from 37\u00b0C to 25\u00b0C. Samples collected at 15, 30, 45, 60 and 90 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL56", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8448", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS34", "description": "15 minute", "sample_id": [ "GSM1019" ], "type": "time", "id": "GDS34_1" }, { "dataset_id": "GDS34", "description": "30 minute", "sample_id": [ "GSM1020" ], "type": "time", "id": "GDS34_2" }, { "dataset_id": "GDS34", "description": "45 minute", "sample_id": [ "GSM1021" ], "type": "time", "id": "GDS34_3" }, { "dataset_id": "GDS34", "description": "60 minute", "sample_id": [ "GSM1022" ], "type": "time", "id": "GDS34_4" }, { "dataset_id": "GDS34", "description": "90 minute", "sample_id": [ "GSM1023" ], "type": "time", "id": "GDS34_5" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS34", "version": 1.0, "instances": "5", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS34.tab", "compression": "gz" } ], [ [ "GDS3400.tab" ], { "title": "Cephaloridine effect on the kidney: dose response", "description": "Analysis of kidneys of animals treated with various doses of cephaloridine (CER). CER is a cephalosporin antibiotic used for studying cephalosporin antibiotic-induced renal tubule damage. Results provide insight into the mechanisms underlying cephalosporin antibiotic-induced nephrotoxicity.", "type": "Expression profiling by array", "pubmed_id": "18500788", "platform": "GPL4135", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE10034", "order": "none", "update_date": "Oct 03 2008", "subsets": [ { "dataset_id": "GDS3400", "description": "saline", "sample_id": [ "GSM253585", "GSM253586", "GSM253587" ], "type": "agent", "id": "GDS3400_1" }, { "dataset_id": "GDS3400", "description": "cephalosporin", "sample_id": [ "GSM253588", "GSM253589", "GSM253590", "GSM253591", "GSM253592", "GSM253593", "GSM253594", "GSM253595", "GSM253596" ], "type": "agent", "id": "GDS3400_2" }, { "dataset_id": "GDS3400", "description": "control", "sample_id": [ "GSM253585", "GSM253586", "GSM253587" ], "type": "dose", "id": "GDS3400_3" }, { "dataset_id": "GDS3400", "description": "150 mg/kg", "sample_id": [ "GSM253588", "GSM253589", "GSM253590" ], "type": "dose", "id": "GDS3400_4" }, { "dataset_id": "GDS3400", "description": "300 mg/kg", "sample_id": [ "GSM253591", "GSM253592", "GSM253593" ], "type": "dose", "id": "GDS3400_5" }, { "dataset_id": "GDS3400", "description": "600 mg/kg", "sample_id": [ "GSM253594", "GSM253595", "GSM253596" ], "type": "dose", "id": "GDS3400_6" } ], "taxid": "10116", "genes": 32478, "aggregation_function": "mean", "name": "GDS3400", "version": 1.0, "instances": "12", "variables": 32481, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3400.tab", "compression": "gz" } ], [ [ "GDS3401.tab" ], { "title": "Two distinct isogenic mesenchymal stem/stromal cell populations from umbilical cord blood (HG-U133A)", "description": "Comparison of UCB1 and UCB2 cells, two distinct isogenic mesenchymal stem/stromal cell (MSC) populations isolated from umbilical cord blood. UCB1 and UCB2 display phenotypic differences. Results provide insight into the molecular basis of the phenotypic heterogeneity among MSC populations.", "type": "Expression profiling by array", "pubmed_id": "17348805", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE6029", "order": "none", "update_date": "Sep 08 2009", "subsets": [ { "dataset_id": "GDS3401", "description": "UCB1 MSC", "sample_id": [ "GSM139881", "GSM139882", "GSM139883" ], "type": "specimen", "id": "GDS3401_1" }, { "dataset_id": "GDS3401", "description": "UCB2 MSC", "sample_id": [ "GSM139888", "GSM139889", "GSM139890" ], "type": "specimen", "id": "GDS3401_2" }, { "dataset_id": "GDS3401", "description": "bone marrow derived MSC", "sample_id": [ "GSM139891", "GSM139892", "GSM139893" ], "type": "specimen", "id": "GDS3401_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3401", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3401.tab", "compression": "gz" } ], [ [ "GDS3402.tab" ], { "title": "Two distinct isogenic mesenchymal stem/stromal cell populations from umbilical cord blood (HG-U133B)", "description": "Comparison of UCB1 and UCB2 cells, two distinct isogenic mesenchymal stem/stromal cell (MSC) populations isolated from umbilical cord blood. UCB1 and UCB2 display phenotypic differences. Results provide insight into the molecular basis of the phenotypic heterogeneity among MSC populations.", "type": "Expression profiling by array", "pubmed_id": "17348805", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE6029", "order": "none", "update_date": "Sep 08 2009", "subsets": [ { "dataset_id": "GDS3402", "description": "UCB1 MSC", "sample_id": [ "GSM139896", "GSM139901", "GSM139903" ], "type": "specimen", "id": "GDS3402_1" }, { "dataset_id": "GDS3402", "description": "UCB2 MSC", "sample_id": [ "GSM139904", "GSM139905", "GSM139906" ], "type": "specimen", "id": "GDS3402_2" }, { "dataset_id": "GDS3402", "description": "bone marrow derived MSC", "sample_id": [ "GSM139907", "GSM139908", "GSM139909" ], "type": "specimen", "id": "GDS3402_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3402", "version": 1.0, "instances": "9", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3402.tab", "compression": "gz" } ], [ [ "GDS3403.tab" ], { "title": "Limb bud zone of polarizing activity", "description": "Analysis of zone of polarizing activity (ZPA) from limb buds of E10.5 embryos. The ZPA is a signaling center that is necessary for the normal anteroposterior patterning of the vertebrate limb. Results identify genes, beyond Sonic hedgehog (shh), expressed in the ZPA compared to the rest of the limb.", "type": "Expression profiling by array", "pubmed_id": "17911046", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7598", "order": "none", "update_date": "Sep 08 2009", "subsets": [ { "dataset_id": "GDS3403", "description": "zone of polarizing activity", "sample_id": [ "GSM183755", "GSM183756", "GSM183757", "GSM183758" ], "type": "cell type", "id": "GDS3403_1" }, { "dataset_id": "GDS3403", "description": "control", "sample_id": [ "GSM183759", "GSM183760", "GSM183761", "GSM183762" ], "type": "cell type", "id": "GDS3403_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3403", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3403.tab", "compression": "gz" } ], [ [ "GDS3404.tab" ], { "title": "Dicer deficiency effect on embryonic stem cells", "description": "Analysis of embryonic stem (ES) cells homozygous or heterozygous null for Dicer, an RNase III endonuclease required for processing microRNAs. Loss of microRNA pathway components negatively affects ES cell differentiation. Results provide insight into the role of microRNAs in ES cell development.", "type": "Expression profiling by array", "pubmed_id": "18311153", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE7141", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3404", "description": "hetrozygous null", "sample_id": [ "GSM172068", "GSM172069", "GSM172070" ], "type": "genotype/variation", "id": "GDS3404_1" }, { "dataset_id": "GDS3404", "description": "homozygous null", "sample_id": [ "GSM172071", "GSM172072", "GSM172073" ], "type": "genotype/variation", "id": "GDS3404_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3404", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3404.tab", "compression": "gz" } ], [ [ "GDS3405.tab" ], { "title": "Embryonic erythroid precursors", "description": "Analysis of primitive erythroid precursors and epithelial cells isolated from frozen sections of the embryonic day 9.5 yolk sac. Results provide insight into the molecular mechanisms underlying embryonic erythropoiesis.", "type": "Expression profiling by array", "pubmed_id": "18213587", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10002", "order": "none", "update_date": "Nov 25 2009", "subsets": [ { "dataset_id": "GDS3405", "description": "erythroid precursor", "sample_id": [ "GSM252734", "GSM252736", "GSM252738", "GSM252740" ], "type": "cell type", "id": "GDS3405_1" }, { "dataset_id": "GDS3405", "description": "epithelial", "sample_id": [ "GSM252735", "GSM252737", "GSM252739", "GSM252741" ], "type": "cell type", "id": "GDS3405_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3405", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3405.tab", "compression": "gz" } ], [ [ "GDS3406.tab" ], { "title": "Nrf2 deficiency effect on the liver", "description": "Analysis of livers from animals lacking Nrf2, a transcription factor involved in the defense against oxidative stress. The liver is often exposed to oxidative stresses, such as those induced by viruses, toxins, and surgery. Results provide insight into the role of Nrf2 in liver regeneration.", "type": "Expression profiling by array", "pubmed_id": "18059474", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8969", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3406", "description": "Nrf2 null", "sample_id": [ "GSM227407", "GSM227408", "GSM227409" ], "type": "genotype/variation", "id": "GDS3406_1" }, { "dataset_id": "GDS3406", "description": "wild type", "sample_id": [ "GSM227410", "GSM227411", "GSM227412" ], "type": "genotype/variation", "id": "GDS3406_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3406", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3406.tab", "compression": "gz" } ], [ [ "GDS3407.tab" ], { "title": "Perfluorooctanoic acid effect on livers lacking PPAR-alpha", "description": "Analysis of PPAR-alpha null livers from animals treated with perfluorooctanoic acid (PFOA), a member of a class of industrial chemicals called peroxisome proliferator chemicals. PFOA exposure is linked to cancer. Results provide insight into the role of PPAR-alpha in mediating the effects of PFOA.", "type": "Expression profiling by array", "pubmed_id": "18281256", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE9786", "order": "none", "update_date": "Oct 07 2008", "subsets": [ { "dataset_id": "GDS3407", "description": "wild type", "sample_id": [ "GSM247116", "GSM247117", "GSM247118", "GSM247119", "GSM247120", "GSM247121", "GSM247122", "GSM247123" ], "type": "genotype/variation", "id": "GDS3407_1" }, { "dataset_id": "GDS3407", "description": "PPAR-alpha null", "sample_id": [ "GSM247124", "GSM247125", "GSM247126", "GSM247127", "GSM247128", "GSM247129", "GSM247130", "GSM247131" ], "type": "genotype/variation", "id": "GDS3407_2" }, { "dataset_id": "GDS3407", "description": "control", "sample_id": [ "GSM247116", "GSM247117", "GSM247118", "GSM247119", "GSM247124", "GSM247125", "GSM247126", "GSM247127" ], "type": "agent", "id": "GDS3407_3" }, { "dataset_id": "GDS3407", "description": "PFOA", "sample_id": [ "GSM247120", "GSM247121", "GSM247122", "GSM247123", "GSM247128", "GSM247129", "GSM247130", "GSM247131" ], "type": "agent", "id": "GDS3407_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3407", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3407.tab", "compression": "gz" } ], [ [ "GDS3408.tab" ], { "title": "Amyotrophic lateral sclerosis model", "description": "Analysis of motor neurons of 60, 90, and 120 day old SOD1 G93A transgenics, a model for familial amyotrophic lateral sclerosis (ALS). ALS is an adult-onset neurodegenerative disease characterized by degeneration of upper and lower motor neurons. Results provide insight into the pathogenesis of ALS.", "type": "Expression profiling by array", "pubmed_id": "17715356", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE10953", "order": "none", "update_date": "Oct 07 2008", "subsets": [ { "dataset_id": "GDS3408", "description": "control", "sample_id": [ "GSM277561", "GSM277562", "GSM277563", "GSM277567", "GSM277568", "GSM277569", "GSM277573", "GSM277574", "GSM277575" ], "type": "strain", "id": "GDS3408_1" }, { "dataset_id": "GDS3408", "description": "SOD1 G93A transgenic", "sample_id": [ "GSM277558", "GSM277559", "GSM277560", "GSM277564", "GSM277565", "GSM277566", "GSM277570", "GSM277571", "GSM277572" ], "type": "strain", "id": "GDS3408_2" }, { "dataset_id": "GDS3408", "description": "60 d", "sample_id": [ "GSM277558", "GSM277559", "GSM277560", "GSM277561", "GSM277562", "GSM277563" ], "type": "age", "id": "GDS3408_3" }, { "dataset_id": "GDS3408", "description": "90 d", "sample_id": [ "GSM277564", "GSM277565", "GSM277566", "GSM277567", "GSM277568", "GSM277569" ], "type": "age", "id": "GDS3408_4" }, { "dataset_id": "GDS3408", "description": "120 d", "sample_id": [ "GSM277570", "GSM277571", "GSM277572", "GSM277573", "GSM277574", "GSM277575" ], "type": "age", "id": "GDS3408_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3408", "version": 1.0, "instances": "18", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3408.tab", "compression": "gz" } ], [ [ "GDS3410.tab" ], { "title": "High doses of perfluorooctanoic acid effect on fetal liver and lung", "description": "Analysis of livers or lungs of fetuses dosed during gestation with up to 10 mg/(kg day) perfluorooctanoic acid (PFOA), an industrial chemical that induces growth deficits and mortality in murine neonates. Results provide insight into the molecular basis of PFOA-induced developmental toxicity.", "type": "Expression profiling by array", "pubmed_id": "17681415", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE13044", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3410", "description": "liver", "sample_id": [ "GSM326944", "GSM326946", "GSM326948", "GSM326950", "GSM326952", "GSM326954", "GSM326956", "GSM326958", "GSM326960", "GSM326962", "GSM326964", "GSM326966", "GSM326968", "GSM326970", "GSM326972" ], "type": "tissue", "id": "GDS3410_1" }, { "dataset_id": "GDS3410", "description": "lung", "sample_id": [ "GSM326943", "GSM326945", "GSM326947", "GSM326949", "GSM326951", "GSM326953", "GSM326955", "GSM326957", "GSM326959", "GSM326961", "GSM326963", "GSM326965", "GSM326967", "GSM326969", "GSM326971" ], "type": "tissue", "id": "GDS3410_2" }, { "dataset_id": "GDS3410", "description": "0 mg", "sample_id": [ "GSM326943", "GSM326944", "GSM326945", "GSM326946", "GSM326947", "GSM326948", "GSM326949", "GSM326950", "GSM326951", "GSM326952" ], "type": "dose", "id": "GDS3410_3" }, { "dataset_id": "GDS3410", "description": "5 mg", "sample_id": [ "GSM326953", "GSM326954", "GSM326955", "GSM326956", "GSM326957", "GSM326958", "GSM326959", "GSM326960", "GSM326961", "GSM326962" ], "type": "dose", "id": "GDS3410_4" }, { "dataset_id": "GDS3410", "description": "10 mg", "sample_id": [ "GSM326963", "GSM326964", "GSM326965", "GSM326966", "GSM326967", "GSM326968", "GSM326969", "GSM326970", "GSM326971", "GSM326972" ], "type": "dose", "id": "GDS3410_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3410", "version": 1.0, "instances": "30", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3410.tab", "compression": "gz" } ], [ [ "GDS3411.tab" ], { "title": "Low doses of perfluorooctanoic acid effect on fetal liver and lung", "description": "Analysis of livers or lungs of fetuses dosed during gestation with up to 3 mg/(kg day) perfluorooctanoic acid (PFOA), an industrial chemical that induces growth deficits and mortality in murine neonates. Results provide insight into the molecular basis of PFOA-induced developmental toxicity.", "type": "Expression profiling by array", "pubmed_id": "17681415", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE13044", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3411", "description": "liver", "sample_id": [ "GSM326974", "GSM326976", "GSM326978", "GSM326980", "GSM326982", "GSM326983", "GSM326985", "GSM326987", "GSM326989", "GSM326991", "GSM326993", "GSM326995", "GSM326997", "GSM326999", "GSM327001" ], "type": "tissue", "id": "GDS3411_1" }, { "dataset_id": "GDS3411", "description": "lung", "sample_id": [ "GSM326973", "GSM326975", "GSM326977", "GSM326979", "GSM326981", "GSM326984", "GSM326986", "GSM326988", "GSM326990", "GSM326992", "GSM326994", "GSM326996", "GSM326998", "GSM327000" ], "type": "tissue", "id": "GDS3411_2" }, { "dataset_id": "GDS3411", "description": "0 mg", "sample_id": [ "GSM326973", "GSM326974", "GSM326975", "GSM326976", "GSM326977", "GSM326978", "GSM326979", "GSM326980", "GSM326981", "GSM326982" ], "type": "dose", "id": "GDS3411_3" }, { "dataset_id": "GDS3411", "description": "1 mg", "sample_id": [ "GSM326983", "GSM326984", "GSM326985", "GSM326986", "GSM326987", "GSM326988", "GSM326989", "GSM326990", "GSM326991" ], "type": "dose", "id": "GDS3411_4" }, { "dataset_id": "GDS3411", "description": "3 mg", "sample_id": [ "GSM326992", "GSM326993", "GSM326994", "GSM326995", "GSM326996", "GSM326997", "GSM326998", "GSM326999", "GSM327000", "GSM327001" ], "type": "dose", "id": "GDS3411_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3411", "version": 1.0, "instances": "29", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3411.tab", "compression": "gz" } ], [ [ "GDS3412.tab" ], { "title": "Retinal pigment epithelium (RPE) response to light damage", "description": "Analysis of RPE from BALBc mice, exposed to 6000 lux cool white light for 1.5 h and allowed to recover for 24 hrs in the dark. RPE is the site of pathologic processes in many retinal disorders. Results provide insight into the molecular response to light damage of the RPE.", "type": "Expression profiling by array", "pubmed_id": "18815272", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE13074", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3412", "description": "light damage", "sample_id": [ "GSM327420", "GSM327421", "GSM327422" ], "type": "stress", "id": "GDS3412_1" }, { "dataset_id": "GDS3412", "description": "dark adapted (control)", "sample_id": [ "GSM327414", "GSM327417", "GSM327419" ], "type": "stress", "id": "GDS3412_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3412", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3412.tab", "compression": "gz" } ], [ [ "GDS3413.tab" ], { "title": "Homocysteine effect on aortic smooth muscle cells in vitro", "description": "Analysis of cultured aortic smooth muscle cells grown for 14 days in the presence of 10 or 100 umol/L DL-homocysteine (Hcy). Elevated plasma levels of Hcy are a risk factor for atherosclerotic vascular disease. Results provide insight into the role of Hcy in atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "18602108", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE9490", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3413", "description": "0 um/L", "sample_id": [ "GSM240525", "GSM240526", "GSM240527", "GSM240528" ], "type": "dose", "id": "GDS3413_1" }, { "dataset_id": "GDS3413", "description": "10 um/L", "sample_id": [ "GSM240529", "GSM240530", "GSM240531", "GSM240532" ], "type": "dose", "id": "GDS3413_2" }, { "dataset_id": "GDS3413", "description": "100 um/L", "sample_id": [ "GSM240533", "GSM240534", "GSM240535", "GSM240848" ], "type": "dose", "id": "GDS3413_3" }, { "dataset_id": "GDS3413", "description": "control", "sample_id": [ "GSM240525", "GSM240526", "GSM240527", "GSM240528" ], "type": "agent", "id": "GDS3413_4" }, { "dataset_id": "GDS3413", "description": "homocysteine", "sample_id": [ "GSM240529", "GSM240530", "GSM240531", "GSM240532", "GSM240533", "GSM240534", "GSM240535", "GSM240848" ], "type": "agent", "id": "GDS3413_5" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS3413", "version": 1.0, "instances": "12", "variables": 45749, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3413.tab", "compression": "gz" } ], [ [ "GDS3414.tab" ], { "title": "Pulmonary embolism model: right heart ventricles", "description": "Analysis of right ventricles (RV) of animals for up to 18 hours after injection with polystyrene microsphere beads to induce pulmonary embolism (PE). Animals injected with 1.3 or 2.0 million microspheres/100g body weight. Results provide insight into the mechanisms leading to RV failure after PE.", "type": "Expression profiling by array", "pubmed_id": "18430806", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE6104", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3414", "description": "vehicle", "sample_id": [ "GSM141570", "GSM141571", "GSM141572", "GSM141573", "GSM141574", "GSM141585", "GSM141586", "GSM141587", "GSM141588", "GSM141589", "GSM141600", "GSM141601", "GSM141602", "GSM141603", "GSM141605" ], "type": "agent", "id": "GDS3414_1" }, { "dataset_id": "GDS3414", "description": "beads", "sample_id": [ "GSM141575", "GSM141576", "GSM141577", "GSM141578", "GSM141579", "GSM141580", "GSM141581", "GSM141582", "GSM141583", "GSM141584", "GSM141590", "GSM141591", "GSM141592", "GSM141593", "GSM141594", "GSM141595", "GSM141596", "GSM141597", "GSM141598", "GSM141599", "GSM141606", "GSM141607", "GSM141608", "GSM141609", "GSM141610", "GSM141611", "GSM141612", "GSM141613", "GSM141614", "GSM141615" ], "type": "agent", "id": "GDS3414_2" }, { "dataset_id": "GDS3414", "description": "control", "sample_id": [ "GSM141570", "GSM141571", "GSM141572", "GSM141573", "GSM141574", "GSM141585", "GSM141586", "GSM141587", "GSM141588", "GSM141589", "GSM141600", "GSM141601", "GSM141602", "GSM141603", "GSM141605" ], "type": "dose", "id": "GDS3414_3" }, { "dataset_id": "GDS3414", "description": "1.3 M per 100g", "sample_id": [ "GSM141575", "GSM141576", "GSM141577", "GSM141578", "GSM141579", "GSM141590", "GSM141591", "GSM141592", "GSM141593", "GSM141594", "GSM141606", "GSM141607", "GSM141608", "GSM141609", "GSM141610" ], "type": "dose", "id": "GDS3414_4" }, { "dataset_id": "GDS3414", "description": "2 M per 100g", "sample_id": [ "GSM141580", "GSM141581", "GSM141582", "GSM141583", "GSM141584", "GSM141595", "GSM141596", "GSM141597", "GSM141598", "GSM141599", "GSM141611", "GSM141612", "GSM141613", "GSM141614", "GSM141615" ], "type": "dose", "id": "GDS3414_5" }, { "dataset_id": "GDS3414", "description": "2 h", "sample_id": [ "GSM141570", "GSM141571", "GSM141572", "GSM141573", "GSM141574", "GSM141575", "GSM141576", "GSM141577", "GSM141578", "GSM141579", "GSM141580", "GSM141581", "GSM141582", "GSM141583", "GSM141584" ], "type": "time", "id": "GDS3414_6" }, { "dataset_id": "GDS3414", "description": "6 h", "sample_id": [ "GSM141585", "GSM141586", "GSM141587", "GSM141588", "GSM141589", "GSM141590", "GSM141591", "GSM141592", "GSM141593", "GSM141594", "GSM141595", "GSM141596", "GSM141597", "GSM141598", "GSM141599" ], "type": "time", "id": "GDS3414_7" }, { "dataset_id": "GDS3414", "description": "18 h", "sample_id": [ "GSM141600", "GSM141601", "GSM141602", "GSM141603", "GSM141605", "GSM141606", "GSM141607", "GSM141608", "GSM141609", "GSM141610", "GSM141611", "GSM141612", "GSM141613", "GSM141614", "GSM141615" ], "type": "time", "id": "GDS3414_8" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3414", "version": 1.0, "instances": "45", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3414.tab", "compression": "gz" } ], [ [ "GDS3415.tab" ], { "title": "Protocadherin 12 deficiency effect on the placenta", "description": "Analysis of embryonic day 12.5 placentas from animals lacking protocadherin 12 (Pcdh12). Pcdh12 is a transmembrane adhesive protein with homophilic adhesive properties. Pcdh12 deficient placentas exhibit a reduction in size. Results provide insight into the function of Pcdh12.", "type": "Expression profiling by array", "pubmed_id": "18477666", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE7676", "order": "none", "update_date": "Oct 22 2008", "subsets": [ { "dataset_id": "GDS3415", "description": "pcdh12 null", "sample_id": [ "GSM185954", "GSM185955", "GSM185956", "GSM185957", "GSM185958" ], "type": "genotype/variation", "id": "GDS3415_1" }, { "dataset_id": "GDS3415", "description": "wild type", "sample_id": [ "GSM185959", "GSM185960", "GSM185961", "GSM185962", "GSM185963" ], "type": "genotype/variation", "id": "GDS3415_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3415", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3415.tab", "compression": "gz" } ], [ [ "GDS3416.tab" ], { "title": "Relaxation response practice effect on blood", "description": "Analysis of whole blood from long-term practitioners of daily relaxation response (RR) practice and those with short-term (8 wks) RR training. RR is a mind-body intervention that offsets the physiological effects caused by stress. Results provide insight into molecular mechanisms underlying the RR.", "type": "Expression profiling by array", "pubmed_id": "18596974", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "72", "value_type": "count", "reference_series": "GSE10041", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3416", "description": "no relaxation response practice", "sample_id": [ "GSM253663", "GSM253664", "GSM253665", "GSM253666", "GSM253667", "GSM253668", "GSM253669", "GSM253670", "GSM253671", "GSM253672", "GSM253673", "GSM253674", "GSM253675", "GSM253676", "GSM253677", "GSM253678", "GSM253679", "GSM253680", "GSM253681", "GSM253682", "GSM253683", "GSM253684", "GSM253685" ], "type": "individual", "id": "GDS3416_1" }, { "dataset_id": "GDS3416", "description": "8 weeks of relaxation response practice", "sample_id": [ "GSM253686", "GSM253687", "GSM253688", "GSM253689", "GSM253690", "GSM253691", "GSM253692", "GSM253693", "GSM253694", "GSM253695", "GSM253696", "GSM253697", "GSM253698", "GSM253699", "GSM253700", "GSM253701", "GSM253702", "GSM253703", "GSM253704", "GSM253705", "GSM253706", "GSM253707", "GSM253708", "GSM253709" ], "type": "individual", "id": "GDS3416_2" }, { "dataset_id": "GDS3416", "description": "long-term daily relaxation response practice", "sample_id": [ "GSM253710", "GSM253711", "GSM253712", "GSM253713", "GSM253714", "GSM253715", "GSM253716", "GSM253717", "GSM253718", "GSM253719", "GSM253720", "GSM253721", "GSM253722", "GSM253723", "GSM253724", "GSM253725", "GSM253726", "GSM253727", "GSM253728", "GSM253729", "GSM253730", "GSM253731", "GSM253732", "GSM253733", "GSM253734" ], "type": "individual", "id": "GDS3416_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3416", "version": 1.0, "instances": "72", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3416.tab", "compression": "gz" } ], [ [ "GDS3417.tab" ], { "title": "Untreated juvenile dermatomyositis muscle biopsies", "description": "Analysis of skeletal muscle biopsies from untreated girls with active symptoms of juvenile dermatomyositis (JDM) less than 2 months or greater than 2 months. Results provide insight into the impact of the duration of chronic inflammation on gene expression in muscle of untreated children with JDM.", "type": "Expression profiling by array", "pubmed_id": "18671865", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE11971", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3417", "description": "control", "sample_id": [ "GSM303205", "GSM303206", "GSM303207", "GSM303208" ], "type": "disease state", "id": "GDS3417_1" }, { "dataset_id": "GDS3417", "description": "long duration", "sample_id": [ "GSM303190", "GSM303191", "GSM303192", "GSM303193", "GSM303194", "GSM303196", "GSM303197", "GSM303199", "GSM303200", "GSM303201", "GSM303203", "GSM303204", "GSM303209", "GSM303210", "GSM303211", "GSM303212" ], "type": "disease state", "id": "GDS3417_2" }, { "dataset_id": "GDS3417", "description": "short duration", "sample_id": [ "GSM303195", "GSM303198", "GSM303202" ], "type": "disease state", "id": "GDS3417_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3417", "version": 1.0, "instances": "23", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3417.tab", "compression": "gz" } ], [ [ "GDS3418.tab" ], { "title": "Spleen CD11b+ cells response to Yersinia enterocolitica (Ye) YopH deletion mutant infection in vivo", "description": "Analysis of splenic CD11b+ cells from animals infected with wildtype Yersinia enterocolitica (Ye) or a YopH-deficient Ye mutant. YopH is a virulence factor that inhibits phagocytosis of Ye and promotes virulence of Ye. Results provide insight into the molecular basis of YopH-mediated immune evasion.", "type": "Expression profiling by array", "pubmed_id": "18803824", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE11189", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3418", "description": "control", "sample_id": [ "GSM281825" ], "type": "infection", "id": "GDS3418_1" }, { "dataset_id": "GDS3418", "description": "Yersinia enterocolitica O8 strain WA-314", "sample_id": [ "GSM281829", "GSM281830" ], "type": "infection", "id": "GDS3418_2" }, { "dataset_id": "GDS3418", "description": "Yersinia enterocolitica YopH deletion mutant", "sample_id": [ "GSM281831", "GSM281832" ], "type": "infection", "id": "GDS3418_3" }, { "dataset_id": "GDS3418", "description": "none", "sample_id": [ "GSM281825" ], "type": "dose", "id": "GDS3418_4" }, { "dataset_id": "GDS3418", "description": "sublethal", "sample_id": [ "GSM281829", "GSM281831" ], "type": "dose", "id": "GDS3418_5" }, { "dataset_id": "GDS3418", "description": "lethal", "sample_id": [ "GSM281830", "GSM281832" ], "type": "dose", "id": "GDS3418_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3418", "version": 1.0, "instances": "5", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3418.tab", "compression": "gz" } ], [ [ "GDS3420.tab" ], { "title": "Cadmium exposure: time course", "description": "Analysis of animals treated with 100 uM cadmium for 4 or 24 hours. Cadmium is a environmental toxicant. Exposure to cadmium is associated with a variety of human diseases. Results provide insight into the molecular mechanisms involved in the defense against cadmium toxicity.", "type": "Expression profiling by array", "pubmed_id": "17592649", "platform": "GPL2875", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log e ratio", "reference_series": "GSE7535", "order": "none", "update_date": "Oct 27 2008", "subsets": [ { "dataset_id": "GDS3420", "description": "4 h", "sample_id": [ "GSM182402", "GSM182403", "GSM182404", "GSM182405", "GSM182406", "GSM182407", "GSM182408", "GSM182409", "GSM182410", "GSM182411", "GSM182412", "GSM182413", "GSM182414", "GSM182415", "GSM182416", "GSM182417", "GSM182418", "GSM182419" ], "type": "time", "id": "GDS3420_1" }, { "dataset_id": "GDS3420", "description": "24 h", "sample_id": [ "GSM182420", "GSM182421", "GSM182422", "GSM182423", "GSM182424", "GSM182425", "GSM182426", "GSM182427", "GSM182428", "GSM182429", "GSM182430", "GSM182431", "GSM182432", "GSM182433", "GSM182434", "GSM182435", "GSM182436", "GSM182437" ], "type": "time", "id": "GDS3420_2" } ], "taxid": "6239", "genes": 20128, "aggregation_function": "mean", "name": "GDS3420", "version": 1.0, "instances": "36", "variables": 20130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3420.tab", "compression": "gz" } ], [ [ "GDS3421.tab" ], { "title": "Frag1 cells response to ionic and non-ionic hyperosmotic stress", "description": "Analysis of bacterial Frag1 cells subjected to ionic (NaCl) and non-ionic (sucrose) hyperosmotic stress (HS). Results provide insight into the molecular mechanisms underlying the specificity of osmotic adjustment to ionic and non-ionic osmotica.", "type": "Expression profiling by array", "pubmed_id": "18793315", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12190", "order": "none", "update_date": "Sep 17 2009", "subsets": [ { "dataset_id": "GDS3421", "description": "control", "sample_id": [ "GSM306856", "GSM306857" ], "type": "stress", "id": "GDS3421_1" }, { "dataset_id": "GDS3421", "description": "non-ionic sucrose hyperosmotic stress", "sample_id": [ "GSM306858", "GSM306859" ], "type": "stress", "id": "GDS3421_2" }, { "dataset_id": "GDS3421", "description": "ionic NaCl hyperosmotic stress", "sample_id": [ "GSM306860", "GSM306861" ], "type": "stress", "id": "GDS3421_3" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS3421", "version": 1.0, "instances": "6", "variables": 8805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3421.tab", "compression": "gz" } ], [ [ "GDS3422.tab" ], { "title": "Activin deficiency effect on ovarian granulosa cells", "description": "Analysis of granulosa cells from animals deficient for all ovarian activins. Granulosa cells are associated with the developing oocyte. Results provide insight into the role of activins in ovarian growth, differentiation, and cancer.", "type": "Expression profiling by array", "pubmed_id": "17609433", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE7150", "order": "none", "update_date": "Sep 09 2009", "subsets": [ { "dataset_id": "GDS3422", "description": "wild type", "sample_id": [ "GSM172345", "GSM172346", "GSM172347" ], "type": "genotype/variation", "id": "GDS3422_1" }, { "dataset_id": "GDS3422", "description": "activin null", "sample_id": [ "GSM172348", "GSM172349" ], "type": "genotype/variation", "id": "GDS3422_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3422", "version": 1.0, "instances": "5", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3422.tab", "compression": "gz" } ], [ [ "GDS3423.tab" ], { "title": "Obese liver response to a short-term low-fat hypocaloric diet", "description": "Analysis of livers from middle-aged obese women on a low-fat hypocaloric diet for 8 weeks. The diet resulted in a mean weight loss of 5% of body weight. Results provide insight into the effect of a hypocaloric diet on the liver at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "18804985", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7117", "order": "none", "update_date": "Oct 27 2008", "subsets": [ { "dataset_id": "GDS3423", "description": "control", "sample_id": [ "GSM162954", "GSM162958", "GSM162960", "GSM162962" ], "type": "protocol", "id": "GDS3423_1" }, { "dataset_id": "GDS3423", "description": "diet", "sample_id": [ "GSM162956", "GSM162957", "GSM162959", "GSM162961" ], "type": "protocol", "id": "GDS3423_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3423", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3423.tab", "compression": "gz" } ], [ [ "GDS3424.tab" ], { "title": "Conjugated linoleic acid isomers effect on intestinal cell line", "description": "Analysis of intestinal Caco-2 cells treated with conjugated linoleic acid (CLA) isomer trans-10, cis-12 CLA or cis-9, trans-11 CLA. CLA exerts isomer-specific effects on transepithelial calcium transport and cell growth in Caco-2 cells. Results provide insight into molecular mechanisms of action.", "type": "Expression profiling by array", "pubmed_id": "17951470", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE6518", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3424", "description": "trans-10, cis-12 CLA", "sample_id": [ "GSM149849", "GSM149850", "GSM149852" ], "type": "agent", "id": "GDS3424_1" }, { "dataset_id": "GDS3424", "description": "linoleic acid", "sample_id": [ "GSM149853", "GSM149856", "GSM149857" ], "type": "agent", "id": "GDS3424_2" }, { "dataset_id": "GDS3424", "description": "cis-9, trans-11 CLA", "sample_id": [ "GSM149858", "GSM149859", "GSM149860" ], "type": "agent", "id": "GDS3424_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3424", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3424.tab", "compression": "gz" } ], [ [ "GDS3425.tab" ], { "title": "Pickle mutant seedlings response to gibberellin inhibition", "description": "Analysis of pickle (pkl) mutant seedlings treated with the gibberellin (GA) inhibitor uniconazole. PKL encodes a CHD3 chromatin remodeler that acts during germination to repress the expression of seed-associated genes. Repression of seed-associated traits is promoted in pkl mutant seedlings by GA.", "type": "Expression profiling by array", "pubmed_id": "18539592", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE11852", "order": "none", "update_date": "Mar 17 2009", "subsets": [ { "dataset_id": "GDS3425", "description": "wildtype", "sample_id": [ "GSM299321", "GSM299322", "GSM299323", "GSM299324", "GSM299325", "GSM299326", "GSM299333", "GSM299334", "GSM299335", "GSM299336", "GSM299337", "GSM299338" ], "type": "genotype/variation", "id": "GDS3425_1" }, { "dataset_id": "GDS3425", "description": "pkl mutant", "sample_id": [ "GSM299327", "GSM299328", "GSM299329", "GSM299330", "GSM299331", "GSM299332", "GSM299339", "GSM299340", "GSM299341", "GSM299408", "GSM299409", "GSM299410" ], "type": "genotype/variation", "id": "GDS3425_2" }, { "dataset_id": "GDS3425", "description": "control", "sample_id": [ "GSM299321", "GSM299322", "GSM299323", "GSM299324", "GSM299325", "GSM299326", "GSM299327", "GSM299328", "GSM299329", "GSM299330", "GSM299331", "GSM299332" ], "type": "agent", "id": "GDS3425_3" }, { "dataset_id": "GDS3425", "description": "uniconazole", "sample_id": [ "GSM299333", "GSM299334", "GSM299335", "GSM299336", "GSM299337", "GSM299338", "GSM299339", "GSM299340", "GSM299341", "GSM299408", "GSM299409", "GSM299410" ], "type": "agent", "id": "GDS3425_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3425", "version": 1.0, "instances": "24", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3425.tab", "compression": "gz" } ], [ [ "GDS3428.tab" ], { "title": "Immature dendritic cell response to butanol fraction of Echinacea purpurea: time course", "description": "Analysis of immature dendritic cell lines (iDCs) treated with the butanol-fraction of stems and leaves of E. purpurea [BF/S+L/Ep] containing defined bioactive phytocompounds. Results provide insight into molecular mechanisms underlying the immune-modulatory activities induced by the phytocompounds.", "type": "Expression profiling by array", "pubmed_id": "18847511", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE12259", "order": "none", "update_date": "Sep 18 2009", "subsets": [ { "dataset_id": "GDS3428", "description": "none", "sample_id": [ "GSM309032", "GSM309033" ], "type": "agent", "id": "GDS3428_1" }, { "dataset_id": "GDS3428", "description": "dimethyl sulfoxide", "sample_id": [ "GSM309034", "GSM309035" ], "type": "agent", "id": "GDS3428_2" }, { "dataset_id": "GDS3428", "description": "cichoric acid", "sample_id": [ "GSM309036", "GSM309037" ], "type": "agent", "id": "GDS3428_3" }, { "dataset_id": "GDS3428", "description": "bioactive butanol fraction", "sample_id": [ "GSM309038", "GSM309039", "GSM309040" ], "type": "agent", "id": "GDS3428_4" }, { "dataset_id": "GDS3428", "description": "0 h", "sample_id": [ "GSM309032", "GSM309033" ], "type": "time", "id": "GDS3428_5" }, { "dataset_id": "GDS3428", "description": "4 h", "sample_id": [ "GSM309034", "GSM309036", "GSM309038" ], "type": "time", "id": "GDS3428_6" }, { "dataset_id": "GDS3428", "description": "12 h", "sample_id": [ "GSM309039" ], "type": "time", "id": "GDS3428_7" }, { "dataset_id": "GDS3428", "description": "24 h", "sample_id": [ "GSM309035", "GSM309037", "GSM309040" ], "type": "time", "id": "GDS3428_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3428", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3428.tab", "compression": "gz" } ], [ [ "GDS3429.tab" ], { "title": "Azaspiracid-1 effect on T lymphocyte cell line: time course and dose response", "description": "Analysis of T lymphocyte Jurkat cells treated with 1 or 10 nM azaspiracid-1 (AZA-1) for up to 24 hours. AZA-1 is a marine biotoxin reported to accumulate in shellfish and is associated with severe gastrointestinal intoxication. Results provide insight into the mechanism of action of AZA-1.", "type": "Expression profiling by array", "pubmed_id": "18191373", "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log2 ratio", "reference_series": "GSE8845", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3429", "description": "1 nM", "sample_id": [ "GSM219864" ], "type": "dose", "id": "GDS3429_1" }, { "dataset_id": "GDS3429", "description": "10 nM", "sample_id": [ "GSM120648", "GSM120708", "GSM120710", "GSM120711", "GSM120715", "GSM120716", "GSM219862", "GSM219863" ], "type": "dose", "id": "GDS3429_2" }, { "dataset_id": "GDS3429", "description": "1 h", "sample_id": [ "GSM120710", "GSM120711" ], "type": "time", "id": "GDS3429_3" }, { "dataset_id": "GDS3429", "description": "4 h", "sample_id": [ "GSM120648", "GSM120708", "GSM219863" ], "type": "time", "id": "GDS3429_4" }, { "dataset_id": "GDS3429", "description": "24 h", "sample_id": [ "GSM120715", "GSM120716", "GSM219862", "GSM219864" ], "type": "time", "id": "GDS3429_5" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS3429", "version": 1.0, "instances": "9", "variables": 30020, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3429.tab", "compression": "gz" } ], [ [ "GDS3430.tab" ], { "title": "Dicer deficient embryonic stem cell response to miR-290 transfection", "description": "Analysis of undifferentiated Dicer deficient embryonic stem (ES) cells transfected with the siRNA-like form of miRNAs of the miR-290 cluster. Loss of miRNA pathway components negatively affects ES cell differentiation. Results provide insight into the role of miR-290 in ES cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "18311153", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8503", "order": "none", "update_date": "Oct 29 2008", "subsets": [ { "dataset_id": "GDS3430", "description": "control", "sample_id": [ "GSM210972", "GSM210973", "GSM210974" ], "type": "agent", "id": "GDS3430_1" }, { "dataset_id": "GDS3430", "description": "miR-290", "sample_id": [ "GSM210975", "GSM210976", "GSM210977" ], "type": "agent", "id": "GDS3430_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3430", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3430.tab", "compression": "gz" } ], [ [ "GDS3431.tab" ], { "title": "Non-alcoholic steatohepatitis model", "description": "Analysis of livers from males fed a high polyunsaturated diet containing 70% corn oil to induce the development of non-alcoholic steatohepatitis (NASH). In NASH, steatosis is accompanied by inflammation, necrosis, apoptosis, and fibrosis. Results provide insight into the pathogenesis of NASH.", "type": "Expression profiling by array", "pubmed_id": "17947452", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE8253", "order": "none", "update_date": "Mar 17 2009", "subsets": [ { "dataset_id": "GDS3431", "description": "control", "sample_id": [ "GSM204001", "GSM204002", "GSM204003" ], "type": "disease state", "id": "GDS3431_1" }, { "dataset_id": "GDS3431", "description": "NASH", "sample_id": [ "GSM204004", "GSM204005", "GSM204017" ], "type": "disease state", "id": "GDS3431_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3431", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3431.tab", "compression": "gz" } ], [ [ "GDS3432.tab" ], { "title": "Osteosarcoma cell line response to activation of specific glucocorticoid receptor alpha isoforms: time course", "description": "Analysis of glucocorticoid receptor alpha (hGRalpha) isoform -A, -B, -C, or -D expressing osteosarcoma cells for up to 24 h after hGRalpha activation with dexomethasone. Cell apoptosis occurred in a GR isoform-selective manner. Results provide insight into the function of each isoform.", "type": "Expression profiling by array", "pubmed_id": [ "17682054", "22174376" ], "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "transformed count", "reference_series": "GSE6711", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS3432", "description": "hGR-alpha", "sample_id": [ "GSM154259", "GSM154260", "GSM154261", "GSM154274", "GSM154275", "GSM154276", "GSM154289", "GSM154290", "GSM154291", "GSM154304", "GSM154305", "GSM154306" ], "type": "agent", "id": "GDS3432_1" }, { "dataset_id": "GDS3432", "description": "hGR-alpha A", "sample_id": [ "GSM154262", "GSM154263", "GSM154264", "GSM154277", "GSM154278", "GSM154279", "GSM154292", "GSM154293", "GSM154294", "GSM154307", "GSM154308", "GSM154309" ], "type": "agent", "id": "GDS3432_2" }, { "dataset_id": "GDS3432", "description": "hGR-alpha B", "sample_id": [ "GSM154265", "GSM154266", "GSM154267", "GSM154280", "GSM154281", "GSM154282", "GSM154295", "GSM154296", "GSM154297", "GSM154310", "GSM154311", "GSM154312" ], "type": "agent", "id": "GDS3432_3" }, { "dataset_id": "GDS3432", "description": "hGR-alpha C", "sample_id": [ "GSM154268", "GSM154269", "GSM154270", "GSM154283", "GSM154284", "GSM154285", "GSM154298", "GSM154299", "GSM154300", "GSM154313", "GSM154314", "GSM154315" ], "type": "agent", "id": "GDS3432_4" }, { "dataset_id": "GDS3432", "description": "hGR-alpha D", "sample_id": [ "GSM154271", "GSM154272", "GSM154273", "GSM154286", "GSM154287", "GSM154288", "GSM154301", "GSM154302", "GSM154303", "GSM154316", "GSM154317", "GSM154318" ], "type": "agent", "id": "GDS3432_5" }, { "dataset_id": "GDS3432", "description": "0 h", "sample_id": [ "GSM154259", "GSM154260", "GSM154261", "GSM154262", "GSM154263", "GSM154264", "GSM154265", "GSM154266", "GSM154267", "GSM154268", "GSM154269", "GSM154270", "GSM154271", "GSM154272", "GSM154273" ], "type": "time", "id": "GDS3432_6" }, { "dataset_id": "GDS3432", "description": "6 h", "sample_id": [ "GSM154274", "GSM154275", "GSM154276", "GSM154277", "GSM154278", "GSM154279", "GSM154280", "GSM154281", "GSM154282", "GSM154283", "GSM154284", "GSM154285", "GSM154286", "GSM154287", "GSM154288" ], "type": "time", "id": "GDS3432_7" }, { "dataset_id": "GDS3432", "description": "12 h", "sample_id": [ "GSM154289", "GSM154290", "GSM154291", "GSM154292", "GSM154293", "GSM154294", "GSM154295", "GSM154296", "GSM154297", "GSM154298", "GSM154299", "GSM154300", "GSM154301", "GSM154302", "GSM154303" ], "type": "time", "id": "GDS3432_8" }, { "dataset_id": "GDS3432", "description": "24 h", "sample_id": [ "GSM154304", "GSM154305", "GSM154306", "GSM154307", "GSM154308", "GSM154309", "GSM154310", "GSM154311", "GSM154312", "GSM154313", "GSM154314", "GSM154315", "GSM154316", "GSM154317", "GSM154318" ], "type": "time", "id": "GDS3432_9" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS3432", "version": 1.0, "instances": "60", "variables": 30020, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3432.tab", "compression": "gz" } ], [ [ "GDS3433.tab" ], { "title": "Azaspiracid-1 effect on T lymphocyte cell line: time course", "description": "Analysis of T lymphocyte Jurkat cells treated with 10 nM azaspiracid-1 (AZA-1) for up to 24 hours. AZA-1 is a marine biotoxin reported to accumulate in shellfish and is associated with severe gastrointestinal human intoxication. Results provide insight into the mechanism of action of AZA-1.", "type": "Expression profiling by array", "pubmed_id": "18191373", "platform": "GPL1708", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "44290", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log10 ratio", "reference_series": "GSE5346", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3433", "description": "1 h", "sample_id": [ "GSM120710", "GSM120711" ], "type": "time", "id": "GDS3433_1" }, { "dataset_id": "GDS3433", "description": "4 h", "sample_id": [ "GSM120648", "GSM120708" ], "type": "time", "id": "GDS3433_2" }, { "dataset_id": "GDS3433", "description": "24 h", "sample_id": [ "GSM120715", "GSM120716" ], "type": "time", "id": "GDS3433_3" } ], "taxid": "9606", "genes": 30017, "aggregation_function": "mean", "name": "GDS3433", "version": 1.0, "instances": "6", "variables": 30019, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3433.tab", "compression": "gz" } ], [ [ "GDS3435.tab" ], { "title": "Vancomycin effect on the kidney: dose response", "description": "Analysis of kidneys of BALB/c females treated with vancomycin (VA) for up to 400 mg/kg delivered intraperitoneally or intravenously. VA, an antibiotic treatment against methicillin-resistant Staphylococcus aureus, is nephrotoxic. Results provide insight into the molecular basis of VA nephrotoxicity.", "type": "Expression profiling by array", "pubmed_id": "18930951", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE7793", "order": "none", "update_date": "Sep 29 2010", "subsets": [ { "dataset_id": "GDS3435", "description": "intravenous", "sample_id": [ "GSM189045", "GSM189047", "GSM189048", "GSM189049", "GSM189050", "GSM189051", "GSM189052", "GSM189053", "GSM189054", "GSM189055", "GSM189056", "GSM189057", "GSM189058", "GSM189059", "GSM189060", "GSM189062", "GSM189063", "GSM189064", "GSM189065", "GSM189066", "GSM189068", "GSM189069", "GSM189070", "GSM189071" ], "type": "protocol", "id": "GDS3435_1" }, { "dataset_id": "GDS3435", "description": "intraperitoneal", "sample_id": [ "GSM189072", "GSM189073", "GSM189074", "GSM189075", "GSM189076", "GSM189077", "GSM189078", "GSM189079", "GSM189080", "GSM189081", "GSM189082", "GSM189083", "GSM189084", "GSM189085", "GSM189086", "GSM189087", "GSM189088", "GSM189089", "GSM189090", "GSM189091", "GSM189092", "GSM189093", "GSM189094", "GSM189095" ], "type": "protocol", "id": "GDS3435_2" }, { "dataset_id": "GDS3435", "description": "saline", "sample_id": [ "GSM189045", "GSM189047", "GSM189048", "GSM189049", "GSM189050", "GSM189051", "GSM189072", "GSM189073", "GSM189074", "GSM189075", "GSM189076", "GSM189077" ], "type": "agent", "id": "GDS3435_3" }, { "dataset_id": "GDS3435", "description": "vancomycin", "sample_id": [ "GSM189052", "GSM189053", "GSM189054", "GSM189055", "GSM189056", "GSM189057", "GSM189058", "GSM189059", "GSM189060", "GSM189062", "GSM189063", "GSM189064", "GSM189065", "GSM189066", "GSM189068", "GSM189069", "GSM189070", "GSM189071", "GSM189078", "GSM189079", "GSM189080", "GSM189081", "GSM189082", "GSM189083", "GSM189084", "GSM189085", "GSM189086", "GSM189087", "GSM189088", "GSM189089", "GSM189090", "GSM189091", "GSM189092", "GSM189093", "GSM189094", "GSM189095" ], "type": "agent", "id": "GDS3435_4" }, { "dataset_id": "GDS3435", "description": "0 mg/kg", "sample_id": [ "GSM189045", "GSM189047", "GSM189048", "GSM189049", "GSM189050", "GSM189051", "GSM189072", "GSM189073", "GSM189074", "GSM189075", "GSM189076", "GSM189077" ], "type": "dose", "id": "GDS3435_5" }, { "dataset_id": "GDS3435", "description": "50 mg/kg", "sample_id": [ "GSM189052", "GSM189053", "GSM189054", "GSM189055", "GSM189056", "GSM189057", "GSM189078", "GSM189079", "GSM189080", "GSM189081", "GSM189082", "GSM189083" ], "type": "dose", "id": "GDS3435_6" }, { "dataset_id": "GDS3435", "description": "200 mg/kg", "sample_id": [ "GSM189058", "GSM189059", "GSM189060", "GSM189062", "GSM189063", "GSM189064", "GSM189084", "GSM189085", "GSM189086", "GSM189087", "GSM189088", "GSM189089" ], "type": "dose", "id": "GDS3435_7" }, { "dataset_id": "GDS3435", "description": "400 mg/kg", "sample_id": [ "GSM189065", "GSM189066", "GSM189068", "GSM189069", "GSM189070", "GSM189071", "GSM189090", "GSM189091", "GSM189092", "GSM189093", "GSM189094", "GSM189095" ], "type": "dose", "id": "GDS3435_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3435", "version": 1.0, "instances": "48", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3435.tab", "compression": "gz" } ], [ [ "GDS3436.tab" ], { "title": "bHLH transcription factor Math2 overexpression effect on cultured brain cerebral cortical cells", "description": "Analysis of cultured brain cerebral cortical cells overexpressing Math2. Math2 is a bHLH transcription factor that is involved in neuronal differentiation and maturation. Results identify Math2 target genes.", "type": "Expression profiling by array", "pubmed_id": "18643870", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11829", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3436", "description": "control", "sample_id": [ "GSM298941", "GSM298942", "GSM298943" ], "type": "protocol", "id": "GDS3436_1" }, { "dataset_id": "GDS3436", "description": "Math2 expression", "sample_id": [ "GSM298944", "GSM298945", "GSM298946" ], "type": "protocol", "id": "GDS3436_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3436", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3436.tab", "compression": "gz" } ], [ [ "GDS3437.tab" ], { "title": "Budding yeast response to heme deficiency", "description": "Analysis of Saccharomyces cerevisiae mutant cells lacking aminolevulinic acid (ALA) synthase. ALA synthase catalyzes the first step of heme biosynthesis. Heme uptake is induced by heme starvation in S. cerevisiae. Results provide insight into the molecular mechanisms regulating heme uptake.", "type": "Expression profiling by array", "pubmed_id": "18326586", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9514", "order": "none", "update_date": "Oct 31 2008", "subsets": [ { "dataset_id": "GDS3437", "description": "no ALA", "sample_id": [ "GSM241150", "GSM241151" ], "type": "growth protocol", "id": "GDS3437_1" }, { "dataset_id": "GDS3437", "description": "with ALA", "sample_id": [ "GSM241146", "GSM241149" ], "type": "growth protocol", "id": "GDS3437_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3437", "version": 1.0, "instances": "4", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3437.tab", "compression": "gz" } ], [ [ "GDS3438.tab" ], { "title": "Budding yeast response to hypoxia", "description": "Analysis of Saccharomyces cerevisiae wild type cells grown under reduced oxygen tension. Heme synthesis requires oxygen, and yeast grown anaerobically exhibit an increased uptake of hemin. Results provide insight into the molecular mechanisms regulating heme uptake.", "type": "Expression profiling by array", "pubmed_id": "18326586", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9514", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3438", "description": "hypoxia", "sample_id": [ "GSM241147", "GSM241148" ], "type": "growth protocol", "id": "GDS3438_1" }, { "dataset_id": "GDS3438", "description": "normoxia", "sample_id": [ "GSM241152", "GSM241153" ], "type": "growth protocol", "id": "GDS3438_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3438", "version": 1.0, "instances": "4", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3438.tab", "compression": "gz" } ], [ [ "GDS3439.tab" ], { "title": "Intralobular and interlobular mammary fibroblasts", "description": "Comparison of intralobular and interlobular fibroblasts isolated from breast tissues. Intralobular fibroblasts surround mammary gland epithelial cells, and interlobular fibroblasts surround intralobular fibroblasts. Results provide insight into the differences between the two fibroblast subtypes.", "type": "Expression profiling by array", "pubmed_id": "18710550", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE12306", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3439", "description": "patient SB7B", "sample_id": [ "GSM309430", "GSM309434" ], "type": "individual", "id": "GDS3439_1" }, { "dataset_id": "GDS3439", "description": "patient SB13L", "sample_id": [ "GSM309436", "GSM309438" ], "type": "individual", "id": "GDS3439_2" }, { "dataset_id": "GDS3439", "description": "patient SB27L", "sample_id": [ "GSM309441", "GSM309450" ], "type": "individual", "id": "GDS3439_3" }, { "dataset_id": "GDS3439", "description": "patient SB29R", "sample_id": [ "GSM309451", "GSM309452" ], "type": "individual", "id": "GDS3439_4" }, { "dataset_id": "GDS3439", "description": "interlobular", "sample_id": [ "GSM309430", "GSM309436", "GSM309441", "GSM309451" ], "type": "cell type", "id": "GDS3439_5" }, { "dataset_id": "GDS3439", "description": "intralobular", "sample_id": [ "GSM309434", "GSM309438", "GSM309450", "GSM309452" ], "type": "cell type", "id": "GDS3439_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3439", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3439.tab", "compression": "gz" } ], [ [ "GDS344.tab" ], { "title": "Chitin synthesis", "description": "Investigation into chitin synthesis in wildtype BY4741 and mutant fks1 (elevated chitin). Cells exposed to chitin-inducing glucosamine either for 2 hours, or continuous steady state.", "type": "Expression profiling by array", "pubmed_id": "14555471", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE441", "order": "none", "update_date": "Jun 13 2003", "subsets": [ { "dataset_id": "GDS344", "description": "wildtype BY4741", "sample_id": [ "GSM6711", "GSM6712", "GSM6713", "GSM6715", "GSM6717", "GSM6726", "GSM6728", "GSM6729", "GSM6730" ], "type": "strain", "id": "GDS344_1" }, { "dataset_id": "GDS344", "description": "mutant FKS1", "sample_id": [ "GSM6731", "GSM6732" ], "type": "strain", "id": "GDS344_2" }, { "dataset_id": "GDS344", "description": "control", "sample_id": [ "GSM6711", "GSM6712", "GSM6713", "GSM6731" ], "type": "protocol", "id": "GDS344_3" }, { "dataset_id": "GDS344", "description": "glucosamine, 2 hours", "sample_id": [ "GSM6715", "GSM6717", "GSM6726", "GSM6732" ], "type": "protocol", "id": "GDS344_4" }, { "dataset_id": "GDS344", "description": "glucosamine, steady state", "sample_id": [ "GSM6728", "GSM6729", "GSM6730" ], "type": "protocol", "id": "GDS344_5" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS344", "version": 1.0, "instances": "11", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS344.tab", "compression": "gz" } ], [ [ "GDS3440.tab" ], { "title": "Aortic endothelial cell response to dominant negative PPAR gamma expression in vitro", "description": "Analysis of cultured endothelial cells expressing the dominant negative V290M PPAR gamma mutant protein. PPAR gamma exerts anti-inflammatory and antioxidant effects in the vascular endothelium. Results provide insight into the molecular basis of PPAR gamma's protective action in the vasculature.", "type": "Expression profiling by array", "pubmed_id": [ "18676352", "25675995" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11870", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3440", "description": "control", "sample_id": [ "GSM299778", "GSM299779", "GSM299780" ], "type": "protocol", "id": "GDS3440_1" }, { "dataset_id": "GDS3440", "description": "V290M PPAR gamma expression", "sample_id": [ "GSM299781", "GSM299782", "GSM299783" ], "type": "protocol", "id": "GDS3440_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3440", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3440.tab", "compression": "gz" } ], [ [ "GDS3441.tab" ], { "title": "Rice leaves response to blast fungus infection: time course", "description": "Analysis of leaves of rice cultivar Nipponbare 3 or 4 days following inoculation with the virulent Magnaporthe grisea FR13 isolate. M. grisea causes blast. Results provide insight into the molecular basis of the susceptibility of rice to blast.", "type": "Expression profiling by array", "pubmed_id": "17905473", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE7256", "order": "none", "update_date": "Mar 17 2009", "subsets": [ { "dataset_id": "GDS3441", "description": "none", "sample_id": [ "GSM174883", "GSM174884", "GSM174888", "GSM174890" ], "type": "infection", "id": "GDS3441_1" }, { "dataset_id": "GDS3441", "description": "Magnaporthe grisea FR13", "sample_id": [ "GSM174885", "GSM174886", "GSM174887", "GSM174889" ], "type": "infection", "id": "GDS3441_2" }, { "dataset_id": "GDS3441", "description": "3 d", "sample_id": [ "GSM174883", "GSM174885", "GSM174887", "GSM174888" ], "type": "time", "id": "GDS3441_3" }, { "dataset_id": "GDS3441", "description": "4 d", "sample_id": [ "GSM174884", "GSM174886", "GSM174889", "GSM174890" ], "type": "time", "id": "GDS3441_4" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS3441", "version": 1.0, "instances": "8", "variables": 50380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3441.tab", "compression": "gz" } ], [ [ "GDS3442.tab" ], { "title": "Embryonic brain development", "description": "Analysis of brains at embryonic days (E) 9.5, 11.5, and 13.5. Mostly undifferentiated neural progenitor cells (NPCs) are present at E9.5, NPCs begin to differentiate into neurons at E11.5, and neurogenesis peaks at E13.5. Results provide insight into the molecular mechanisms underlying neurogenesis.", "type": "Expression profiling by array", "pubmed_id": "18283662", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE8091", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3442", "description": "E9.5", "sample_id": [ "GSM200695", "GSM200696", "GSM200697", "GSM200698", "GSM200699", "GSM200716" ], "type": "age", "id": "GDS3442_1" }, { "dataset_id": "GDS3442", "description": "E11.5", "sample_id": [ "GSM200700", "GSM200701", "GSM200703", "GSM200704" ], "type": "age", "id": "GDS3442_2" }, { "dataset_id": "GDS3442", "description": "E13.5", "sample_id": [ "GSM200706", "GSM200707", "GSM200708", "GSM200709", "GSM200711", "GSM200713" ], "type": "age", "id": "GDS3442_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3442", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3442.tab", "compression": "gz" } ], [ [ "GDS3444.tab" ], { "title": "Embryonic stem cell response to STAT3 overexpression in vitro (MG-U74A)", "description": "Analysis of cultured embryonic stem (ES) cells overexpressing the transcription factor STAT3. STAT3 is a downstream target of the LIF signaling cascade. LIF activation maintains ES cells in a pluripotent state. Results provide insight into the role of STAT3 in maintenance of ES cell pluripotency.", "type": "Expression profiling by array", "pubmed_id": "18500982", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11398", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3444", "description": "STAT3 overexpression", "sample_id": [ "GSM287673", "GSM287674", "GSM287675" ], "type": "protocol", "id": "GDS3444_1" }, { "dataset_id": "GDS3444", "description": "control", "sample_id": [ "GSM287676", "GSM287677", "GSM287678" ], "type": "protocol", "id": "GDS3444_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3444", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3444.tab", "compression": "gz" } ], [ [ "GDS3445.tab" ], { "title": "Embryonic stem cell response to STAT3 overexpression in vitro (MG-U74B)", "description": "Analysis of cultured embryonic stem (ES) cells overexpressing the transcription factor STAT3. STAT3 is a downstream target of the LIF signaling cascade. LIF activation maintains ES cells in a pluripotent state. Results provide insight into the role of STAT3 in maintenance of ES cell pluripotency.", "type": "Expression profiling by array", "pubmed_id": "18500982", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11398", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3445", "description": "STAT3 overexpression", "sample_id": [ "GSM287691", "GSM287692", "GSM287756" ], "type": "protocol", "id": "GDS3445_1" }, { "dataset_id": "GDS3445", "description": "control", "sample_id": [ "GSM287693", "GSM287694", "GSM287725" ], "type": "protocol", "id": "GDS3445_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS3445", "version": 1.0, "instances": "6", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3445.tab", "compression": "gz" } ], [ [ "GDS3446.tab" ], { "title": "Embryonic stem cell response to STAT3 overexpression in vitro (MG-U74C)", "description": "Analysis of cultured embryonic stem (ES) cells overexpressing the transcription factor STAT3. STAT3 is a downstream target of the LIF signaling cascade. LIF activation maintains ES cells in a pluripotent state. Results provide insight into the role of STAT3 in maintenance of ES cell pluripotency.", "type": "Expression profiling by array", "pubmed_id": "18500982", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11398", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3446", "description": "control", "sample_id": [ "GSM287726", "GSM287727", "GSM287728" ], "type": "protocol", "id": "GDS3446_1" }, { "dataset_id": "GDS3446", "description": "STAT3 overexpression", "sample_id": [ "GSM287729", "GSM287730", "GSM287731" ], "type": "protocol", "id": "GDS3446_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS3446", "version": 1.0, "instances": "6", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3446.tab", "compression": "gz" } ], [ [ "GDS3447.tab" ], { "title": "Lung development (Mu11K-A)", "description": "Analysis of lungs from embryonic day 12 to adulthood. Results provide insight into the molecular mechanisms governing normal lung development.", "type": "Expression profiling by array", "pubmed_id": "11970905", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE10889", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3447", "description": "E12", "sample_id": [ "GSM275963" ], "type": "age", "id": "GDS3447_1" }, { "dataset_id": "GDS3447", "description": "E14", "sample_id": [ "GSM275964" ], "type": "age", "id": "GDS3447_2" }, { "dataset_id": "GDS3447", "description": "E16", "sample_id": [ "GSM275965" ], "type": "age", "id": "GDS3447_3" }, { "dataset_id": "GDS3447", "description": "E18", "sample_id": [ "GSM275966" ], "type": "age", "id": "GDS3447_4" }, { "dataset_id": "GDS3447", "description": "P1", "sample_id": [ "GSM275967" ], "type": "age", "id": "GDS3447_5" }, { "dataset_id": "GDS3447", "description": "P4", "sample_id": [ "GSM275968" ], "type": "age", "id": "GDS3447_6" }, { "dataset_id": "GDS3447", "description": "P7", "sample_id": [ "GSM275969" ], "type": "age", "id": "GDS3447_7" }, { "dataset_id": "GDS3447", "description": "P10", "sample_id": [ "GSM275970" ], "type": "age", "id": "GDS3447_8" }, { "dataset_id": "GDS3447", "description": "P14", "sample_id": [ "GSM275971" ], "type": "age", "id": "GDS3447_9" }, { "dataset_id": "GDS3447", "description": "P21", "sample_id": [ "GSM275972" ], "type": "age", "id": "GDS3447_10" }, { "dataset_id": "GDS3447", "description": "adult", "sample_id": [ "GSM275973" ], "type": "age", "id": "GDS3447_11" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS3447", "version": 1.0, "instances": "11", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3447.tab", "compression": "gz" } ], [ [ "GDS3448.tab" ], { "title": "Lung development (Mu11K-B)", "description": "Analysis of lungs from embryonic day 12 to adulthood. Results provide insight into the molecular mechanisms governing normal lung development.", "type": "Expression profiling by array", "pubmed_id": "11970905", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE10889", "order": "none", "update_date": "Sep 10 2009", "subsets": [ { "dataset_id": "GDS3448", "description": "E12", "sample_id": [ "GSM276086" ], "type": "age", "id": "GDS3448_1" }, { "dataset_id": "GDS3448", "description": "E14", "sample_id": [ "GSM276087" ], "type": "age", "id": "GDS3448_2" }, { "dataset_id": "GDS3448", "description": "E16", "sample_id": [ "GSM276088" ], "type": "age", "id": "GDS3448_3" }, { "dataset_id": "GDS3448", "description": "E18", "sample_id": [ "GSM276089" ], "type": "age", "id": "GDS3448_4" }, { "dataset_id": "GDS3448", "description": "P1", "sample_id": [ "GSM276090" ], "type": "age", "id": "GDS3448_5" }, { "dataset_id": "GDS3448", "description": "P4", "sample_id": [ "GSM276091" ], "type": "age", "id": "GDS3448_6" }, { "dataset_id": "GDS3448", "description": "P7", "sample_id": [ "GSM276092" ], "type": "age", "id": "GDS3448_7" }, { "dataset_id": "GDS3448", "description": "P10", "sample_id": [ "GSM276093" ], "type": "age", "id": "GDS3448_8" }, { "dataset_id": "GDS3448", "description": "P14", "sample_id": [ "GSM276094" ], "type": "age", "id": "GDS3448_9" }, { "dataset_id": "GDS3448", "description": "P21", "sample_id": [ "GSM276095" ], "type": "age", "id": "GDS3448_10" }, { "dataset_id": "GDS3448", "description": "adult", "sample_id": [ "GSM276096" ], "type": "age", "id": "GDS3448_11" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS3448", "version": 1.0, "instances": "11", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3448.tab", "compression": "gz" } ], [ [ "GDS345.tab" ], { "title": "Aldosterone response", "description": "Identification of early aldosterone-responsive genes after 1 hour exposure in inner medullary collecting duct cell line, mIMCD-3. Aldosterone is major regulator of Na(+) and acid-base balance and control of blood pressure.", "type": "Expression profiling by array", "pubmed_id": "12770840", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE434", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS345", "description": "aldosterone", "sample_id": [ "GSM6604", "GSM6606" ], "type": "agent", "id": "GDS345_1" }, { "dataset_id": "GDS345", "description": "control", "sample_id": [ "GSM6603", "GSM6605", "GSM6607" ], "type": "agent", "id": "GDS345_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS345", "version": 1.0, "instances": "5", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS345.tab", "compression": "gz" } ], [ [ "GDS3452.tab" ], { "title": "Nematode model of primary mitochondrial dysfunction: complex I mutants", "description": "Analysis of gas-1(fc21) electron transport chain complex I mutants. The gas-1(fc21) mutation affects the 49 kD subunit of complex I, decreasing the rate of complex I-dependent oxidative phosphorylation. Results provide insight into molecular mechanisms underlying primary mitochondrial disease .", "type": "Expression profiling by array", "pubmed_id": "18178500", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE9896", "order": "none", "update_date": "Nov 18 2008", "subsets": [ { "dataset_id": "GDS3452", "description": "wildtype", "sample_id": [ "GSM250116", "GSM250117", "GSM250118", "GSM250119", "GSM250120" ], "type": "genotype/variation", "id": "GDS3452_1" }, { "dataset_id": "GDS3452", "description": "complex I gas-1(fc21) mutant", "sample_id": [ "GSM250111", "GSM250112", "GSM250113", "GSM250114", "GSM250115" ], "type": "genotype/variation", "id": "GDS3452_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3452", "version": 1.0, "instances": "10", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3452.tab", "compression": "gz" } ], [ [ "GDS3453.tab" ], { "title": "Nematode models of primary mitochondrial dysfunction: complex I, II, and III mutants", "description": "Analysis of 8 different electron transport chain (ETC) subunit mutants (3 missense and 5 RNAi-induced) in complexes I, II, and III. Results from this validation set provide insight into the contributions of individual complexes or subunits to primary mitochondrial dysfunction.", "type": "Expression profiling by array", "pubmed_id": "18178500", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE9897", "order": "none", "update_date": "Nov 18 2008", "subsets": [ { "dataset_id": "GDS3453", "description": "wildtype", "sample_id": [ "GSM251550", "GSM251551" ], "type": "genotype/variation", "id": "GDS3453_1" }, { "dataset_id": "GDS3453", "description": "complex I mutant", "sample_id": [ "GSM251552", "GSM251555", "GSM251556", "GSM251557", "GSM251558", "GSM251559" ], "type": "genotype/variation", "id": "GDS3453_2" }, { "dataset_id": "GDS3453", "description": "complex II mutant", "sample_id": [ "GSM251553" ], "type": "genotype/variation", "id": "GDS3453_3" }, { "dataset_id": "GDS3453", "description": "complex III mutant", "sample_id": [ "GSM251554" ], "type": "genotype/variation", "id": "GDS3453_4" }, { "dataset_id": "GDS3453", "description": "missense mutation", "sample_id": [ "GSM251552", "GSM251553", "GSM251554" ], "type": "protocol", "id": "GDS3453_5" }, { "dataset_id": "GDS3453", "description": "RNAi-induced gene knockdown", "sample_id": [ "GSM251555", "GSM251556", "GSM251557", "GSM251558", "GSM251559" ], "type": "protocol", "id": "GDS3453_6" }, { "dataset_id": "GDS3453", "description": "control for missense", "sample_id": [ "GSM251550" ], "type": "protocol", "id": "GDS3453_7" }, { "dataset_id": "GDS3453", "description": "control for RNAi", "sample_id": [ "GSM251551" ], "type": "protocol", "id": "GDS3453_8" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3453", "version": 1.0, "instances": "10", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3453.tab", "compression": "gz" } ], [ [ "GDS3454.tab" ], { "title": "Murine model of primary mitochondrial dysfunction", "description": "Analysis of hepatocytes from Pdss2 liver-specific knockouts. The mutant livers are depleted for Coenzyme Q (CoQ), a critical component of the mitochondrial respiratory chain. Results from this mammalian model of primary mitochondrial dysfunction are compared to nematode models (GDS3452 and GDS3453).", "type": "Expression profiling by array", "pubmed_id": "18437205", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE10904", "order": "none", "update_date": "Nov 18 2008", "subsets": [ { "dataset_id": "GDS3454", "description": "wildtype", "sample_id": [ "GSM276436", "GSM276437", "GSM276438" ], "type": "genotype/variation", "id": "GDS3454_1" }, { "dataset_id": "GDS3454", "description": "liver-specific Pdss2 knockout mutant", "sample_id": [ "GSM276433", "GSM276434", "GSM276435" ], "type": "genotype/variation", "id": "GDS3454_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3454", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3454.tab", "compression": "gz" } ], [ [ "GDS3455.tab" ], { "title": "Kras G12D heterozygous mutation effect on somatic cell line (MG-430A 2.0)", "description": "Analysis of MLP-29 liver cells bearing the heterozygous Kras G12D mutation. KRAS mutations are present at a high frequency in human cancers. Results identify a gene expression signature for the presence of the mutated Kras.", "type": "Expression profiling by array", "pubmed_id": "17875685", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE8711", "order": "none", "update_date": "Nov 19 2008", "subsets": [ { "dataset_id": "GDS3455", "description": "wildtype", "sample_id": [ "GSM220140", "GSM220144" ], "type": "protocol", "id": "GDS3455_1" }, { "dataset_id": "GDS3455", "description": "neomycin knock-in", "sample_id": [ "GSM220141", "GSM220145" ], "type": "protocol", "id": "GDS3455_2" }, { "dataset_id": "GDS3455", "description": "Kras G12D knock-in", "sample_id": [ "GSM220142", "GSM220143", "GSM220146", "GSM220147" ], "type": "protocol", "id": "GDS3455_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3455", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3455.tab", "compression": "gz" } ], [ [ "GDS3456.tab" ], { "title": "Kras G12D heterozygous mutation effect on somatic cell line (Sentrix MouseRef-8)", "description": "Analysis of MLP-29 liver cells bearing the heterozygous Kras G12D mutation. KRAS mutations are present at a high frequency in human cancers. Results identify a gene expression signature for the presence of the mutated Kras.", "type": "Expression profiling by array", "pubmed_id": "17875685", "platform": "GPL4865", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24048", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE8711", "order": "none", "update_date": "Nov 19 2008", "subsets": [ { "dataset_id": "GDS3456", "description": "wildtype", "sample_id": [ "GSM220148" ], "type": "protocol", "id": "GDS3456_1" }, { "dataset_id": "GDS3456", "description": "neomycin knock-in", "sample_id": [ "GSM220149" ], "type": "protocol", "id": "GDS3456_2" }, { "dataset_id": "GDS3456", "description": "Kras G12D knock-in", "sample_id": [ "GSM220150", "GSM220151" ], "type": "protocol", "id": "GDS3456_3" } ], "taxid": "10090", "genes": 18829, "aggregation_function": "mean", "name": "GDS3456", "version": 1.0, "instances": "4", "variables": 18831, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3456.tab", "compression": "gz" } ], [ [ "GDS3459.tab" ], { "title": "Frontotemporal lobar degeneration with ubiquitinated inclusions and progranulin mutations: various brain regions", "description": "Analysis of various brain regions of patients who suffered from frontotemporal lobar degeneration with ubiquitinated inclusions (FTLD-U). Presence of progranulin (GRN) mutations determined. GRN mutations are associated with FTLD-U. Results identify expression signatures for GRN subtypes of FTLD-U.", "type": "Expression profiling by array", "pubmed_id": "18223198", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE13162", "order": "none", "update_date": "Mar 18 2009", "subsets": [ { "dataset_id": "GDS3459", "description": "control", "sample_id": [ "GSM329660", "GSM329661", "GSM329662", "GSM329663", "GSM329664", "GSM329665", "GSM329666", "GSM329667", "GSM329668", "GSM329669", "GSM329670", "GSM329671", "GSM329672", "GSM329673", "GSM329674", "GSM329675", "GSM329676" ], "type": "disease state", "id": "GDS3459_1" }, { "dataset_id": "GDS3459", "description": "FTLD-U with progranulin mutation", "sample_id": [ "GSM329677", "GSM329678", "GSM329679", "GSM329680", "GSM329681", "GSM329682", "GSM329683", "GSM329684", "GSM329685", "GSM329686", "GSM329687", "GSM329688", "GSM329689", "GSM329690", "GSM329691" ], "type": "disease state", "id": "GDS3459_2" }, { "dataset_id": "GDS3459", "description": "FTLD-U without progranulin mutation", "sample_id": [ "GSM329692", "GSM329693", "GSM329694", "GSM329695", "GSM329696", "GSM329697", "GSM329698", "GSM329699", "GSM329700", "GSM329701", "GSM329702", "GSM329703", "GSM329704", "GSM329705", "GSM329706", "GSM329707", "GSM329708", "GSM329709", "GSM329710", "GSM329711", "GSM329712", "GSM329713", "GSM329714", "GSM329715" ], "type": "disease state", "id": "GDS3459_3" }, { "dataset_id": "GDS3459", "description": "frontal", "sample_id": [ "GSM329660", "GSM329663", "GSM329664", "GSM329666", "GSM329667", "GSM329670", "GSM329672", "GSM329674", "GSM329677", "GSM329679", "GSM329681", "GSM329683", "GSM329686", "GSM329689", "GSM329692", "GSM329694", "GSM329697", "GSM329700", "GSM329703", "GSM329704", "GSM329707", "GSM329709", "GSM329711", "GSM329714" ], "type": "tissue", "id": "GDS3459_4" }, { "dataset_id": "GDS3459", "description": "hippocampus", "sample_id": [ "GSM329661", "GSM329669", "GSM329678", "GSM329680", "GSM329685", "GSM329688", "GSM329691", "GSM329693", "GSM329696", "GSM329699", "GSM329702", "GSM329706", "GSM329708", "GSM329710", "GSM329713" ], "type": "tissue", "id": "GDS3459_5" }, { "dataset_id": "GDS3459", "description": "cerebellum", "sample_id": [ "GSM329662", "GSM329665", "GSM329668", "GSM329671", "GSM329673", "GSM329675", "GSM329676", "GSM329682", "GSM329684", "GSM329687", "GSM329690", "GSM329695", "GSM329698", "GSM329701", "GSM329705", "GSM329712", "GSM329715" ], "type": "tissue", "id": "GDS3459_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3459", "version": 1.0, "instances": "56", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3459.tab", "compression": "gz" } ], [ [ "GDS346.tab" ], { "title": "Serotonergic hallucinogen effect in somatosensory cortex", "description": "Effect of 5-HT2A seratonin receptor agonist (\u00b1)2,5-dimethoxy 4-iodoamphetamine (DOI) in somatosensory cortex. 129Sv mice injected with DOI (2 mg/kg or 10 mg/kg), 1 hour. Abnormal 5-HT2A receptor function implicated in depression and schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "14523084", "platform": "GPL226", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "3168", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE138", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS346", "description": "2 mg/kg", "sample_id": [ "GSM3377", "GSM3378", "GSM3379", "GSM3381" ], "type": "dose", "id": "GDS346_1" }, { "dataset_id": "GDS346", "description": "10 mg/kg", "sample_id": [ "GSM3380", "GSM3382", "GSM3383" ], "type": "dose", "id": "GDS346_2" } ], "taxid": "10090", "genes": 898, "aggregation_function": "mean", "name": "GDS346", "version": 1.0, "instances": "7", "variables": 900, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS346.tab", "compression": "gz" } ], [ [ "GDS3461.tab" ], { "title": "microRNA-140 overexpression effect on fibroblast cell line", "description": "Analysis of C3H10T1/2 fibroblast cells following microRNA-140 overexpression. MicroRNAs are short noncoding RNA molecules that regulate the expression of mRNAs. Results identify gene targets of microRNA-140.", "type": "Expression profiling by array", "pubmed_id": [ "18945805", "20071455" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE13590", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3461", "description": "microRNA-140 overexpression", "sample_id": [ "GSM341870", "GSM341871", "GSM341872" ], "type": "protocol", "id": "GDS3461_1" }, { "dataset_id": "GDS3461", "description": "control", "sample_id": [ "GSM341873", "GSM341874", "GSM341910" ], "type": "protocol", "id": "GDS3461_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3461", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3461.tab", "compression": "gz" } ], [ [ "GDS3462.tab" ], { "title": "microRNA-140 silencing effect on fibroblast cell line", "description": "Analysis of C3H10T1/2 fibroblast cells following microRNA-140 silencing. MicroRNAs are short noncoding RNA molecules that regulate the expression of mRNAs. Results identify gene targets of microRNA-140.", "type": "Expression profiling by array", "pubmed_id": [ "18945805", "20071455" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE13590", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3462", "description": "microRNA-140 silencing", "sample_id": [ "GSM341737", "GSM341739", "GSM341740" ], "type": "protocol", "id": "GDS3462_1" }, { "dataset_id": "GDS3462", "description": "control", "sample_id": [ "GSM341742", "GSM341743", "GSM341744" ], "type": "protocol", "id": "GDS3462_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3462", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3462.tab", "compression": "gz" } ], [ [ "GDS3463.tab" ], { "title": "Sepsis effect on the skeletal muscle", "description": "Analysis of muscle biopsies from septic patients treated in the intensive care unit. Septic patients often develop multiple organ failure including persistent skeletal muscle dysfunction. Results provide insight into the molecular defects driving loss of muscle function and metabolic homeostasis.", "type": "Expression profiling by array", "pubmed_id": "18997871", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE13205", "order": "none", "update_date": "Nov 25 2008", "subsets": [ { "dataset_id": "GDS3463", "description": "sepsis", "sample_id": [ "GSM333436", "GSM333437", "GSM333438", "GSM333439", "GSM333440", "GSM333441", "GSM333442", "GSM333443", "GSM333444", "GSM333445", "GSM333446", "GSM333447", "GSM333448" ], "type": "disease state", "id": "GDS3463_1" }, { "dataset_id": "GDS3463", "description": "control", "sample_id": [ "GSM333449", "GSM333450", "GSM333451", "GSM333452", "GSM333453", "GSM333454", "GSM333455", "GSM333456" ], "type": "disease state", "id": "GDS3463_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3463", "version": 1.0, "instances": "21", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3463.tab", "compression": "gz" } ], [ [ "GDS3464.tab" ], { "title": "SPT5 mutant embryos", "description": "Analysis of fog-sk8 mutant embryos containing a severe truncation of Spt5. Spt5 regulates transcription elongation. Results identify Spt5 target genes during development.", "type": "Expression profiling by array", "pubmed_id": "18978947", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE12826", "order": "none", "update_date": "Nov 25 2008", "subsets": [ { "dataset_id": "GDS3464", "description": "wild type", "sample_id": [ "GSM322065", "GSM322066", "GSM322067" ], "type": "genotype/variation", "id": "GDS3464_1" }, { "dataset_id": "GDS3464", "description": "spt5 mutant", "sample_id": [ "GSM322068", "GSM322069", "GSM322070" ], "type": "genotype/variation", "id": "GDS3464_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS3464", "version": 1.0, "instances": "6", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3464.tab", "compression": "gz" } ], [ [ "GDS3465.tab" ], { "title": "PPARalpha deficient heart response to chronic pressure overload", "description": "Analysis of heart left ventricles subjected to chronic pressure overload for 28 days to induce cardiac hypertrophy. PPARalpha mitigates cardiac hypertrophy. Results provide insight into processes and signalling pathways regulated by PPARalpha in hearts challenged by chronic pressure overload.", "type": "Expression profiling by array", "pubmed_id": "18812456", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE12337", "order": "none", "update_date": "Nov 25 2008", "subsets": [ { "dataset_id": "GDS3465", "description": "wild type", "sample_id": [ "GSM309958", "GSM309959", "GSM309960", "GSM309961", "GSM309962", "GSM309963", "GSM309964", "GSM309965" ], "type": "genotype/variation", "id": "GDS3465_1" }, { "dataset_id": "GDS3465", "description": "PPARalpha null", "sample_id": [ "GSM309966", "GSM309967", "GSM309968", "GSM309969", "GSM309970", "GSM309971", "GSM309972", "GSM309973" ], "type": "genotype/variation", "id": "GDS3465_2" }, { "dataset_id": "GDS3465", "description": "control", "sample_id": [ "GSM309958", "GSM309959", "GSM309960", "GSM309961", "GSM309966", "GSM309967", "GSM309968", "GSM309969" ], "type": "stress", "id": "GDS3465_3" }, { "dataset_id": "GDS3465", "description": "pressure overload", "sample_id": [ "GSM309962", "GSM309963", "GSM309964", "GSM309965", "GSM309970", "GSM309971", "GSM309972", "GSM309973" ], "type": "stress", "id": "GDS3465_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3465", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3465.tab", "compression": "gz" } ], [ [ "GDS3466.tab" ], { "title": "Gastrointestinal tract response to cytotoxic chemotherapy: time course", "description": "Analysis of the gastrointestinal tracts of animals up to 72 hours following treatment with the chemotherapy agent irinotecan to induce gastrointestinal mucositis (GM). GM is caused by the cytotoxic effects of cancer chemotherapy and radiotherapy. Results provide insight into the pathogenesis of GM.", "type": "Expression profiling by array", "pubmed_id": "17594691", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE11722", "order": "none", "update_date": "Nov 25 2008", "subsets": [ { "dataset_id": "GDS3466", "description": "stomach", "sample_id": [ "GSM297524", "GSM297525", "GSM297526", "GSM297527", "GSM297528", "GSM297529", "GSM297530", "GSM297531", "GSM297532", "GSM297533" ], "type": "tissue", "id": "GDS3466_1" }, { "dataset_id": "GDS3466", "description": "jejunum", "sample_id": [ "GSM297534", "GSM297535", "GSM297536", "GSM297537", "GSM297538", "GSM297539", "GSM297540", "GSM297541", "GSM297542", "GSM297543" ], "type": "tissue", "id": "GDS3466_2" }, { "dataset_id": "GDS3466", "description": "colon", "sample_id": [ "GSM297544", "GSM297545", "GSM297546", "GSM297547", "GSM297548", "GSM297549", "GSM297550", "GSM297551", "GSM297552", "GSM297553" ], "type": "tissue", "id": "GDS3466_3" }, { "dataset_id": "GDS3466", "description": "control", "sample_id": [ "GSM297524", "GSM297525", "GSM297534", "GSM297535", "GSM297544", "GSM297545" ], "type": "agent", "id": "GDS3466_4" }, { "dataset_id": "GDS3466", "description": "irinotecan", "sample_id": [ "GSM297526", "GSM297527", "GSM297528", "GSM297529", "GSM297530", "GSM297531", "GSM297532", "GSM297533", "GSM297536", "GSM297537", "GSM297538", "GSM297539", "GSM297540", "GSM297541", "GSM297542", "GSM297543", "GSM297546", "GSM297547", "GSM297548", "GSM297549", "GSM297550", "GSM297551", "GSM297552", "GSM297553" ], "type": "agent", "id": "GDS3466_5" }, { "dataset_id": "GDS3466", "description": "0 h", "sample_id": [ "GSM297524", "GSM297525", "GSM297534", "GSM297535", "GSM297544", "GSM297545" ], "type": "time", "id": "GDS3466_6" }, { "dataset_id": "GDS3466", "description": "1 h", "sample_id": [ "GSM297526", "GSM297527", "GSM297536", "GSM297537", "GSM297546", "GSM297547" ], "type": "time", "id": "GDS3466_7" }, { "dataset_id": "GDS3466", "description": "6 h", "sample_id": [ "GSM297528", "GSM297529", "GSM297538", "GSM297539", "GSM297548", "GSM297549" ], "type": "time", "id": "GDS3466_8" }, { "dataset_id": "GDS3466", "description": "24 h", "sample_id": [ "GSM297530", "GSM297531", "GSM297540", "GSM297541", "GSM297550", "GSM297551" ], "type": "time", "id": "GDS3466_9" }, { "dataset_id": "GDS3466", "description": "72 h", "sample_id": [ "GSM297532", "GSM297533", "GSM297542", "GSM297543", "GSM297552", "GSM297553" ], "type": "time", "id": "GDS3466_10" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3466", "version": 1.0, "instances": "30", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3466.tab", "compression": "gz" } ], [ [ "GDS3467.tab" ], { "title": "Preeclampsia: first trimester placentas of pre-symptomatic women", "description": "Analysis of first trimester placenta tissues obtained by chorionic villus sampling from women destined to develop preeclampsia. Preeclampsia is a cause of maternal, fetal, and neonatal morbidity and mortality. Results provide insight into the molecular pathogenesis of preeclampsia.", "type": "Expression profiling by array", "pubmed_id": "19027158", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12767", "order": "none", "update_date": "Nov 26 2008", "subsets": [ { "dataset_id": "GDS3467", "description": "control", "sample_id": [ "GSM320282", "GSM320285", "GSM320286", "GSM320287", "GSM320289", "GSM320290", "GSM320291", "GSM320293" ], "type": "disease state", "id": "GDS3467_1" }, { "dataset_id": "GDS3467", "description": "preeclampsia", "sample_id": [ "GSM320283", "GSM320284", "GSM320288", "GSM320292" ], "type": "disease state", "id": "GDS3467_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3467", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3467.tab", "compression": "gz" } ], [ [ "GDS3468.tab" ], { "title": "Multifunctional protein 2 deficiency effect on the liver", "description": "Analysis of livers of 2 day old mutants lacking multifunctional protein 2 (Mfp2), an enzyme of the peroxisomal beta-oxidation pathway. Mfp2 deficiency results in extensive metabolic and pathological abnormalities starting in the postnatal period and leads to death by the age of 6 months.", "type": "Expression profiling by array", "pubmed_id": "18773970", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE10895", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3468", "description": "wild type", "sample_id": [ "GSM276176", "GSM276178", "GSM276179", "GSM276181" ], "type": "genotype/variation", "id": "GDS3468_1" }, { "dataset_id": "GDS3468", "description": "mfp2 null", "sample_id": [ "GSM276175", "GSM276177", "GSM276180", "GSM276182" ], "type": "genotype/variation", "id": "GDS3468_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3468", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3468.tab", "compression": "gz" } ], [ [ "GDS3469.tab" ], { "title": "Leukotriene D4 effect on monocytes", "description": "Analysis of monocytes following stimulation with leukotriene D4 (LTD4), a cysteinyl leukotriene (CysLT). CysLTs are mediators of innate immune responsiveness and chronic inflammatory diseases. Results provide insight into the signaling pathways involved in monocyte activation by cysLTs.", "type": "Expression profiling by array", "pubmed_id": "18028998", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE7807", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3469", "description": "leuktriene D4", "sample_id": [ "GSM189451", "GSM189452", "GSM189453", "GSM189454" ], "type": "agent", "id": "GDS3469_1" }, { "dataset_id": "GDS3469", "description": "control", "sample_id": [ "GSM189447", "GSM189448", "GSM189449", "GSM189450" ], "type": "agent", "id": "GDS3469_2" }, { "dataset_id": "GDS3469", "description": "donor 1", "sample_id": [ "GSM189447", "GSM189451" ], "type": "individual", "id": "GDS3469_3" }, { "dataset_id": "GDS3469", "description": "donor 2", "sample_id": [ "GSM189448", "GSM189452" ], "type": "individual", "id": "GDS3469_4" }, { "dataset_id": "GDS3469", "description": "donor 3", "sample_id": [ "GSM189449", "GSM189453" ], "type": "individual", "id": "GDS3469_5" }, { "dataset_id": "GDS3469", "description": "donor 4", "sample_id": [ "GSM189450", "GSM189454" ], "type": "individual", "id": "GDS3469_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3469", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3469.tab", "compression": "gz" } ], [ [ "GDS3470.tab" ], { "title": "miR-122 overexpression effect on embryonic stem cells", "description": "Analysis of embryonic stem cells (ESCs) overexpressing wild-type miR-122. miR-122 is an endoderm specific microRNA. Results provide insight into the role of miR-122 in the differentiation of ESCs.", "type": "Expression profiling by array", "pubmed_id": "19015728", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE13460", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3470", "description": "miR-122", "sample_id": [ "GSM339012", "GSM339426" ], "type": "agent", "id": "GDS3470_1" }, { "dataset_id": "GDS3470", "description": "control", "sample_id": [ "GSM339011", "GSM339425", "GSM339427" ], "type": "agent", "id": "GDS3470_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3470", "version": 1.0, "instances": "5", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3470.tab", "compression": "gz" } ], [ [ "GDS3471.tab" ], { "title": "B-precursor acute lymphoblastic leukemia tumors sensitive and resistant to ionizing radiation", "description": "Analysis of B-precursor acute lymphoblastic (ALL) tumor cells exposed to ionizing radiation (IR) to induce DNA damage in vitro. Half of the tumors are sensitive to IR induced apoptosis. Results provide insight into the molecular basis of the differences in response of B-precursor ALL to IR.", "type": "Expression profiling by array", "pubmed_id": "18941120", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE13280", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3471", "description": "IR-responsive ALL", "sample_id": [ "GSM335233", "GSM335234", "GSM335235", "GSM335236", "GSM335237", "GSM335238", "GSM335239", "GSM335240", "GSM335241", "GSM335242", "GSM335243", "GSM335244", "GSM335245", "GSM335246", "GSM335247", "GSM335248", "GSM335249", "GSM335250", "GSM335251", "GSM335252", "GSM335253", "GSM335254" ], "type": "disease state", "id": "GDS3471_1" }, { "dataset_id": "GDS3471", "description": "IR -resistant ALL", "sample_id": [ "GSM335255", "GSM335256", "GSM335257", "GSM335258", "GSM335259", "GSM335260", "GSM335261", "GSM335262", "GSM335263", "GSM335264", "GSM335265", "GSM335266", "GSM335267", "GSM335268", "GSM335269", "GSM335270", "GSM335271", "GSM335272", "GSM335273", "GSM335274", "GSM335275", "GSM335276" ], "type": "disease state", "id": "GDS3471_2" }, { "dataset_id": "GDS3471", "description": "control", "sample_id": [ "GSM335233", "GSM335234", "GSM335235", "GSM335236", "GSM335237", "GSM335238", "GSM335239", "GSM335240", "GSM335241", "GSM335242", "GSM335243", "GSM335255", "GSM335256", "GSM335257", "GSM335258", "GSM335259", "GSM335260", "GSM335261", "GSM335262", "GSM335263", "GSM335264", "GSM335265" ], "type": "agent", "id": "GDS3471_3" }, { "dataset_id": "GDS3471", "description": "IR", "sample_id": [ "GSM335244", "GSM335245", "GSM335246", "GSM335247", "GSM335248", "GSM335249", "GSM335250", "GSM335251", "GSM335252", "GSM335253", "GSM335254", "GSM335266", "GSM335267", "GSM335268", "GSM335269", "GSM335270", "GSM335271", "GSM335272", "GSM335273", "GSM335274", "GSM335275", "GSM335276" ], "type": "agent", "id": "GDS3471_4" }, { "dataset_id": "GDS3471", "description": "case 1", "sample_id": [ "GSM335233", "GSM335244" ], "type": "individual", "id": "GDS3471_5" }, { "dataset_id": "GDS3471", "description": "case 2", "sample_id": [ "GSM335234", "GSM335245" ], "type": "individual", "id": "GDS3471_6" }, { "dataset_id": "GDS3471", "description": "case 3", "sample_id": [ "GSM335235", "GSM335246" ], "type": "individual", "id": "GDS3471_7" }, { "dataset_id": "GDS3471", "description": "case 4", "sample_id": [ "GSM335236", "GSM335247" ], "type": "individual", "id": "GDS3471_8" }, { "dataset_id": "GDS3471", "description": "case 5", "sample_id": [ "GSM335237", "GSM335248" ], "type": "individual", "id": "GDS3471_9" }, { "dataset_id": "GDS3471", "description": "case 6", "sample_id": [ "GSM335238", "GSM335249" ], "type": "individual", "id": "GDS3471_10" }, { "dataset_id": "GDS3471", "description": "case 7", "sample_id": [ "GSM335239", "GSM335250" ], "type": "individual", "id": "GDS3471_11" }, { "dataset_id": "GDS3471", "description": "case 8", "sample_id": [ "GSM335240", "GSM335251" ], "type": "individual", "id": "GDS3471_12" }, { "dataset_id": "GDS3471", "description": "case 9", "sample_id": [ "GSM335241", "GSM335252" ], "type": "individual", "id": "GDS3471_13" }, { "dataset_id": "GDS3471", "description": "case 10", "sample_id": [ "GSM335242", "GSM335253" ], "type": "individual", "id": "GDS3471_14" }, { "dataset_id": "GDS3471", "description": "case 11", "sample_id": [ "GSM335243", "GSM335254" ], "type": "individual", "id": "GDS3471_15" }, { "dataset_id": "GDS3471", "description": "case 12", "sample_id": [ "GSM335255", "GSM335266" ], "type": "individual", "id": "GDS3471_16" }, { "dataset_id": "GDS3471", "description": "case 13", "sample_id": [ "GSM335256", "GSM335267" ], "type": "individual", "id": "GDS3471_17" }, { "dataset_id": "GDS3471", "description": "case 14", "sample_id": [ "GSM335257", "GSM335268" ], "type": "individual", "id": "GDS3471_18" }, { "dataset_id": "GDS3471", "description": "case 15", "sample_id": [ "GSM335258", "GSM335269" ], "type": "individual", "id": "GDS3471_19" }, { "dataset_id": "GDS3471", "description": "case 16", "sample_id": [ "GSM335259", "GSM335270" ], "type": "individual", "id": "GDS3471_20" }, { "dataset_id": "GDS3471", "description": "case 17", "sample_id": [ "GSM335260", "GSM335271" ], "type": "individual", "id": "GDS3471_21" }, { "dataset_id": "GDS3471", "description": "case 18", "sample_id": [ "GSM335261", "GSM335272" ], "type": "individual", "id": "GDS3471_22" }, { "dataset_id": "GDS3471", "description": "case 19", "sample_id": [ "GSM335262", "GSM335273" ], "type": "individual", "id": "GDS3471_23" }, { "dataset_id": "GDS3471", "description": "case 20", "sample_id": [ "GSM335263", "GSM335274" ], "type": "individual", "id": "GDS3471_24" }, { "dataset_id": "GDS3471", "description": "case 21", "sample_id": [ "GSM335264", "GSM335275" ], "type": "individual", "id": "GDS3471_25" }, { "dataset_id": "GDS3471", "description": "case 22", "sample_id": [ "GSM335265", "GSM335276" ], "type": "individual", "id": "GDS3471_26" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3471", "version": 1.0, "instances": "44", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3471.tab", "compression": "gz" } ], [ [ "GDS3472.tab" ], { "title": "Barrett's esophagus", "description": "Analysis of Barrett's esophagus (BE), normal esophageal, and small intestinal biopsies. In BE, normal esophageal squamous epithelium transdifferentiates into simple columnar epithelium resembling that of small intestine. Results provide insight into the molecular basis of this transdifferentiation.", "type": "Expression profiling by array", "pubmed_id": "18953412", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE13083", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3472", "description": "Barrett's esophagus", "sample_id": [ "GSM327649", "GSM327650", "GSM327651", "GSM327652", "GSM327653", "GSM327654", "GSM327655" ], "type": "disease state", "id": "GDS3472_1" }, { "dataset_id": "GDS3472", "description": "normal", "sample_id": [ "GSM327637", "GSM327638", "GSM327639", "GSM327640", "GSM327641", "GSM327642", "GSM327643", "GSM327644", "GSM327645", "GSM327646", "GSM327647", "GSM327648" ], "type": "disease state", "id": "GDS3472_2" }, { "dataset_id": "GDS3472", "description": "esophagus", "sample_id": [ "GSM327642", "GSM327643", "GSM327644", "GSM327645", "GSM327646", "GSM327647", "GSM327648", "GSM327649", "GSM327650", "GSM327651", "GSM327652", "GSM327653", "GSM327654", "GSM327655" ], "type": "tissue", "id": "GDS3472_3" }, { "dataset_id": "GDS3472", "description": "small intestine", "sample_id": [ "GSM327637", "GSM327638", "GSM327639", "GSM327640", "GSM327641" ], "type": "tissue", "id": "GDS3472_4" }, { "dataset_id": "GDS3472", "description": "control", "sample_id": [ "GSM327637", "GSM327638", "GSM327639", "GSM327640", "GSM327641" ], "type": "individual", "id": "GDS3472_5" }, { "dataset_id": "GDS3472", "description": "patient 021101", "sample_id": [ "GSM327642", "GSM327649" ], "type": "individual", "id": "GDS3472_6" }, { "dataset_id": "GDS3472", "description": "patient 021301", "sample_id": [ "GSM327643", "GSM327650" ], "type": "individual", "id": "GDS3472_7" }, { "dataset_id": "GDS3472", "description": "patient 120902", "sample_id": [ "GSM327644", "GSM327651" ], "type": "individual", "id": "GDS3472_8" }, { "dataset_id": "GDS3472", "description": "patient 130701", "sample_id": [ "GSM327645", "GSM327652" ], "type": "individual", "id": "GDS3472_9" }, { "dataset_id": "GDS3472", "description": "patient 191102-1", "sample_id": [ "GSM327646", "GSM327653" ], "type": "individual", "id": "GDS3472_10" }, { "dataset_id": "GDS3472", "description": "patient 23100", "sample_id": [ "GSM327647", "GSM327654" ], "type": "individual", "id": "GDS3472_11" }, { "dataset_id": "GDS3472", "description": "patient 25091", "sample_id": [ "GSM327648", "GSM327655" ], "type": "individual", "id": "GDS3472_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3472", "version": 1.0, "instances": "19", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3472.tab", "compression": "gz" } ], [ [ "GDS3473.tab" ], { "title": "Aiolos/OBF-1 double null mutation effect on bone marrow pre-BII cells", "description": "Analysis of bone marrow pre-BII cells from Aiolos/OBF-1 double null mutants. Aiolos is a chromatin regulator, OBF-1 a transcriptional activator. Small pre-BII to immature B cell transition is impaired in the double mutants. Results provide insight into the role of Aiolos and OBF-1 in pre-BII cells.", "type": "Expression profiling by array", "pubmed_id": "18974788", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE12356", "order": "none", "update_date": "Dec 01 2008", "subsets": [ { "dataset_id": "GDS3473", "description": "OBF-1 null", "sample_id": [ "GSM310373", "GSM310374" ], "type": "genotype/variation", "id": "GDS3473_1" }, { "dataset_id": "GDS3473", "description": "wild type", "sample_id": [ "GSM310371", "GSM310372" ], "type": "genotype/variation", "id": "GDS3473_2" }, { "dataset_id": "GDS3473", "description": "Aiolos null", "sample_id": [ "GSM310375", "GSM310376" ], "type": "genotype/variation", "id": "GDS3473_3" }, { "dataset_id": "GDS3473", "description": "Aiolos/OBF-1 double null", "sample_id": [ "GSM310377", "GSM310378" ], "type": "genotype/variation", "id": "GDS3473_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3473", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3473.tab", "compression": "gz" } ], [ [ "GDS3474.tab" ], { "title": "Limb girdle muscular dystrophy 2A (HG-U133A)", "description": "Analysis of skeletal muscles from patients with limb girdle muscular dystrophy 2A (LGMD2A). LGMD2A is a recessive genetic disorder caused by mutations in calpain 3 (CAPN3). Results provide insight into the molecular pathogenesis of LGMD2A.", "type": "Expression profiling by array", "pubmed_id": "19015733", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE11681", "order": "none", "update_date": "Dec 01 2008", "subsets": [ { "dataset_id": "GDS3474", "description": "control", "sample_id": [ "GSM296720", "GSM296721", "GSM296722", "GSM296723", "GSM296725", "GSM296726", "GSM296727", "GSM296728", "GSM296731", "GSM296732" ], "type": "disease state", "id": "GDS3474_1" }, { "dataset_id": "GDS3474", "description": "LGMD2A", "sample_id": [ "GSM296718", "GSM296719", "GSM296724", "GSM296729", "GSM296730", "GSM296733", "GSM296734", "GSM296735", "GSM296736", "GSM296737" ], "type": "disease state", "id": "GDS3474_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3474", "version": 1.0, "instances": "20", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3474.tab", "compression": "gz" } ], [ [ "GDS3475.tab" ], { "title": "Limb girdle muscular dystrophy 2A (HG-U133B)", "description": "Analysis of skeletal muscles from patients with limb girdle muscular dystrophy 2A (LGMD2A). LGMD2A is a recessive genetic disorder caused by mutations in calpain 3 (CAPN3). Results provide insight into the molecular pathogenesis of LGMD2A.", "type": "Expression profiling by array", "pubmed_id": "19015733", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE11681", "order": "none", "update_date": "Dec 01 2008", "subsets": [ { "dataset_id": "GDS3475", "description": "LGMD2A", "sample_id": [ "GSM296738", "GSM296742", "GSM296747", "GSM296748", "GSM296751", "GSM296752", "GSM296753", "GSM296754" ], "type": "disease state", "id": "GDS3475_1" }, { "dataset_id": "GDS3475", "description": "control", "sample_id": [ "GSM296739", "GSM296740", "GSM296741", "GSM296743", "GSM296744", "GSM296745", "GSM296746", "GSM296749", "GSM296750" ], "type": "disease state", "id": "GDS3475_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3475", "version": 1.0, "instances": "17", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3475.tab", "compression": "gz" } ], [ [ "GDS3476.tab" ], { "title": "NF-E2-related factor 2 Nrf2 activation effect on the liver", "description": "Analysis of livers with hepatocyte-specific Keap1 deficiency. Keap1 represses transcription factor NF-E2-related factor 2 (Nrf2) signaling. Amplification of Nrf2 signaling inhibits acute inflammatory liver injury. Results provide insight into the molecular basis of Nrf2-dependent cytoprotection.", "type": "Expression profiling by array", "pubmed_id": "18417483", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11287", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3476", "description": "Nrf2 activation", "sample_id": [ "GSM284935", "GSM284936", "GSM284937" ], "type": "protocol", "id": "GDS3476_1" }, { "dataset_id": "GDS3476", "description": "control", "sample_id": [ "GSM284938", "GSM284939", "GSM284940" ], "type": "protocol", "id": "GDS3476_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3476", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3476.tab", "compression": "gz" } ], [ [ "GDS3477.tab" ], { "title": "Zinc finger protein Zelda deficiency effect on the embryo", "description": "Analysis of embryos lacking the zinc finger protein Zelda. Results provide insight into the role of Zelda in the transfer of control of embryogenesis to the zygotic genome during the process of maternal-to-zygotic transition.", "type": "Expression profiling by array", "pubmed_id": "18931655", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11231", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3477", "description": "wild type", "sample_id": [ "GSM283122", "GSM283123", "GSM283124" ], "type": "genotype/variation", "id": "GDS3477_1" }, { "dataset_id": "GDS3477", "description": "Zelda null", "sample_id": [ "GSM283119", "GSM283120", "GSM283121" ], "type": "genotype/variation", "id": "GDS3477_2" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3477", "version": 1.0, "instances": "6", "variables": 16713, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3477.tab", "compression": "gz" } ], [ [ "GDS3478.tab" ], { "title": "22q11 microdeletion syndrome model: prefrontal cortex", "description": "Analysis of prefrontal cortex of Df(16)A/+ animals. Df(16)A/+ animals carry microdeletions of about 1.3Mb in the locus syntenic to human 22q11.2. Individuals with 22q11.2 microdeletions show behavioral and cognitive deficits and are at high risk of developing schizophrenia.", "type": "Expression profiling by array", "pubmed_id": [ "18469815", "23332760" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE10784", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS3478", "description": "wild type", "sample_id": [ "GSM272325", "GSM272326", "GSM272327", "GSM272328", "GSM272332", "GSM272334", "GSM272336", "GSM272337", "GSM272338", "GSM272339" ], "type": "strain", "id": "GDS3478_1" }, { "dataset_id": "GDS3478", "description": "Df(16)A/+", "sample_id": [ "GSM272324", "GSM272329", "GSM272330", "GSM272331", "GSM272333", "GSM272335", "GSM272340", "GSM272341", "GSM272342", "GSM272343" ], "type": "strain", "id": "GDS3478_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3478", "version": 1.0, "instances": "20", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3478.tab", "compression": "gz" } ], [ [ "GDS3479.tab" ], { "title": "22q11 microdeletion syndrome model: hippocampus", "description": "Analysis of hippocampi of Df(16)A/+ animals. Df(16)A/+ animals carry microdeletions of about 1.3Mb in the locus syntenic to human 22q11.2. Individuals with 22q11.2 microdeletions show behavioral and cognitive deficits and are at high risk of developing schizophrenia.", "type": "Expression profiling by array", "pubmed_id": [ "18469815", "23332760" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE10784", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS3479", "description": "wild type", "sample_id": [ "GSM272346", "GSM272347", "GSM272348", "GSM272349", "GSM272353", "GSM272355", "GSM272357", "GSM272358", "GSM272359", "GSM272360" ], "type": "strain", "id": "GDS3479_1" }, { "dataset_id": "GDS3479", "description": "Df(16)A/+", "sample_id": [ "GSM272344", "GSM272345", "GSM272350", "GSM272351", "GSM272352", "GSM272354", "GSM272356", "GSM272361", "GSM272362", "GSM272363" ], "type": "strain", "id": "GDS3479_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3479", "version": 1.0, "instances": "20", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3479.tab", "compression": "gz" } ], [ [ "GDS3480.tab" ], { "title": "Sox10 depletion effect on Schwannoma cell line", "description": "Analysis of RT4D6 Schwannoma cells depleted for Sox10, an Sry-related HMG-Box transcription factor. Sox10 is important in the development of several cell lineages including neural crest stem cells and the derivative peripheral glial cells and melanocytes. Results identify Sox10 gene targets.", "type": "Expression profiling by array", "pubmed_id": "18786246", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE12007", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3480", "description": "control", "sample_id": [ "GSM303510", "GSM303512" ], "type": "protocol", "id": "GDS3480_1" }, { "dataset_id": "GDS3480", "description": "Sox10 depletion", "sample_id": [ "GSM303507", "GSM303511" ], "type": "protocol", "id": "GDS3480_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3480", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3480.tab", "compression": "gz" } ], [ [ "GDS3481.tab" ], { "title": "NOR1 gene and EWS/NOR1 fusion gene overexpression", "description": "Analysis of cells overexpressing NOR1 or the EWS/NOR1 fusion gene. NOR1 encodes an orphan nuclear receptor. The EWS gene is involved in various malignancies by way of chromosomal translocations, and the EWS/NOR1 gene fusion is implicated in the pathogenesis of extraskeletal myxoid chondrosarcomas.", "type": "Expression profiling by array", "pubmed_id": "18680143", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE11185", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3481", "description": "NOR1 control", "sample_id": [ "GSM281775" ], "type": "protocol", "id": "GDS3481_1" }, { "dataset_id": "GDS3481", "description": "NOR1 overexpression", "sample_id": [ "GSM281776" ], "type": "protocol", "id": "GDS3481_2" }, { "dataset_id": "GDS3481", "description": "EWS/NOR1 overexpression", "sample_id": [ "GSM281778" ], "type": "protocol", "id": "GDS3481_3" }, { "dataset_id": "GDS3481", "description": "EWS/NOR1 control", "sample_id": [ "GSM281777" ], "type": "protocol", "id": "GDS3481_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3481", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3481.tab", "compression": "gz" } ], [ [ "GDS3482.tab" ], { "title": "X-linked inhibitor of apoptosis XIAP depletion effect on a colorectal cancer cell line", "description": "Analysis of early and late passage HCT116 colon cancer cells depleted for X-linked inhibitor of apoptosis (XIAP). XIAP is overexpressed in the majority of NCI 60 cell lines compared to normal cells suggesting a potential role as a therapeutic target in a wide spectrum of malignancies.", "type": "Expression profiling by array", "pubmed_id": "19034449", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE11618", "order": "none", "update_date": "Sep 11 2009", "subsets": [ { "dataset_id": "GDS3482", "description": "lucifierase control", "sample_id": [ "GSM294802", "GSM294803", "GSM294804", "GSM294805", "GSM294814", "GSM294815", "GSM294816", "GSM294817" ], "type": "protocol", "id": "GDS3482_1" }, { "dataset_id": "GDS3482", "description": "XIAP depletion", "sample_id": [ "GSM294806", "GSM294807", "GSM294808", "GSM294809", "GSM294810", "GSM294811", "GSM294812", "GSM294813" ], "type": "protocol", "id": "GDS3482_2" }, { "dataset_id": "GDS3482", "description": "parental control", "sample_id": [ "GSM294818", "GSM294819" ], "type": "protocol", "id": "GDS3482_3" }, { "dataset_id": "GDS3482", "description": "control", "sample_id": [ "GSM294818", "GSM294819" ], "type": "other", "id": "GDS3482_4" }, { "dataset_id": "GDS3482", "description": "early passage", "sample_id": [ "GSM294802", "GSM294803", "GSM294804", "GSM294805", "GSM294806", "GSM294807", "GSM294808", "GSM294809" ], "type": "other", "id": "GDS3482_5" }, { "dataset_id": "GDS3482", "description": "late passage", "sample_id": [ "GSM294814", "GSM294815", "GSM294816", "GSM294817", "GSM294810", "GSM294811", "GSM294812", "GSM294813" ], "type": "other", "id": "GDS3482_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3482", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3482.tab", "compression": "gz" } ], [ [ "GDS3483.tab" ], { "title": "Pulmonary microvascular endothelial cell response to hypoxia in vitro: time course", "description": "Analysis of pulmonary microvascular endothelial cells subjected to hypoxia for up to 48 hours. Pulmonary hypoxia is a common complication of chronic lung diseases leading to the development of pulmonary hypertension. Results provide insight into the molecular pathogenesis of pulmonary hypertension.", "type": "Expression profiling by array", "pubmed_id": "18469115", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE11341", "order": "none", "update_date": "Dec 10 2008", "subsets": [ { "dataset_id": "GDS3483", "description": "lung endothelial cell", "sample_id": [ "GSM286407", "GSM286408", "GSM286409", "GSM286410", "GSM286411", "GSM286412", "GSM286413", "GSM286414", "GSM286415", "GSM286416", "GSM286417" ], "type": "cell type", "id": "GDS3483_1" }, { "dataset_id": "GDS3483", "description": "cardiac endothelial cell", "sample_id": [ "GSM286418", "GSM286419", "GSM286420", "GSM286421", "GSM286422", "GSM286423", "GSM286424", "GSM286425", "GSM286426", "GSM286427", "GSM286428", "GSM286429" ], "type": "cell type", "id": "GDS3483_2" }, { "dataset_id": "GDS3483", "description": "normoxia", "sample_id": [ "GSM286407", "GSM286410", "GSM286414", "GSM286418", "GSM286422", "GSM286426" ], "type": "stress", "id": "GDS3483_3" }, { "dataset_id": "GDS3483", "description": "hypoxia", "sample_id": [ "GSM286408", "GSM286409", "GSM286411", "GSM286412", "GSM286413", "GSM286415", "GSM286416", "GSM286417", "GSM286419", "GSM286420", "GSM286421", "GSM286423", "GSM286424", "GSM286425", "GSM286427", "GSM286428", "GSM286429" ], "type": "stress", "id": "GDS3483_4" }, { "dataset_id": "GDS3483", "description": "control", "sample_id": [ "GSM286407", "GSM286410", "GSM286414", "GSM286418", "GSM286422", "GSM286426" ], "type": "time", "id": "GDS3483_5" }, { "dataset_id": "GDS3483", "description": "3 h", "sample_id": [ "GSM286411", "GSM286415", "GSM286419", "GSM286423", "GSM286427" ], "type": "time", "id": "GDS3483_6" }, { "dataset_id": "GDS3483", "description": "24 h", "sample_id": [ "GSM286408", "GSM286412", "GSM286416", "GSM286420", "GSM286424", "GSM286428" ], "type": "time", "id": "GDS3483_7" }, { "dataset_id": "GDS3483", "description": "48 h", "sample_id": [ "GSM286409", "GSM286413", "GSM286417", "GSM286421", "GSM286425", "GSM286429" ], "type": "time", "id": "GDS3483_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3483", "version": 1.0, "instances": "23", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3483.tab", "compression": "gz" } ], [ [ "GDS3484.tab" ], { "title": "Insulin-like growth factor-I effect on breast cancer cell line: time course", "description": "Analysis of breast cancer MCF-7 cells stimulated with insulin-like growth factor-I (IGF-I) for 3 or 24 hours. High serum IGF-I levels are associated with an elevated risk of breast cancer. Results provide insight into the role of IGF-1 in the development and progression of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "18757322", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE7561", "order": "none", "update_date": "Dec 10 2008", "subsets": [ { "dataset_id": "GDS3484", "description": "control", "sample_id": [ "GSM183421", "GSM183422", "GSM183423", "GSM183424", "GSM183425" ], "type": "agent", "id": "GDS3484_1" }, { "dataset_id": "GDS3484", "description": "IGF-I", "sample_id": [ "GSM183426", "GSM183427", "GSM183428", "GSM183429", "GSM183430", "GSM183431" ], "type": "agent", "id": "GDS3484_2" }, { "dataset_id": "GDS3484", "description": "3 h", "sample_id": [ "GSM183421", "GSM183422", "GSM183426", "GSM183427", "GSM183428" ], "type": "time", "id": "GDS3484_3" }, { "dataset_id": "GDS3484", "description": "24 h", "sample_id": [ "GSM183423", "GSM183424", "GSM183425", "GSM183429", "GSM183430", "GSM183431" ], "type": "time", "id": "GDS3484_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3484", "version": 1.0, "instances": "11", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3484.tab", "compression": "gz" } ], [ [ "GDS3485.tab" ], { "title": "Zinc transporter SLC39A13 deficiency effect on chondrocytes", "description": "Analysis of chondrocytes lacking the zinc transporter SLC39A13. Zinc is an essential trace element that is abundant in connective tissues. Results provide insight into the role of zinc in connective tissues.", "type": "Expression profiling by array", "pubmed_id": "18985159", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10556", "order": "none", "update_date": "Dec 10 2008", "subsets": [ { "dataset_id": "GDS3485", "description": "wild type", "sample_id": [ "GSM266740", "GSM266741", "GSM266742" ], "type": "genotype/variation", "id": "GDS3485_1" }, { "dataset_id": "GDS3485", "description": "Slc39A13 null", "sample_id": [ "GSM266743", "GSM266745", "GSM266746" ], "type": "genotype/variation", "id": "GDS3485_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3485", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3485.tab", "compression": "gz" } ], [ [ "GDS3486.tab" ], { "title": "Transcription factor GATA4 deficiency effect on the jejunum", "description": "Analysis of jejuna of animals whose small intestinal epithelia lack the zinc finger transcription factor GATA4. These mutants exhibit impaired intestinal absorption of dietary fat and cholesterol. Results provide insight into the role of GATA4 in jejunal function.", "type": "Expression profiling by array", "pubmed_id": "18812176", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE11194", "order": "none", "update_date": "Dec 10 2008", "subsets": [ { "dataset_id": "GDS3486", "description": "ileum", "sample_id": [ "GSM281932", "GSM281933", "GSM281934" ], "type": "tissue", "id": "GDS3486_1" }, { "dataset_id": "GDS3486", "description": "jejunum", "sample_id": [ "GSM281926", "GSM281927", "GSM281928", "GSM281929", "GSM281930", "GSM281931" ], "type": "tissue", "id": "GDS3486_2" }, { "dataset_id": "GDS3486", "description": "control", "sample_id": [ "GSM281926", "GSM281927", "GSM281928", "GSM281932", "GSM281933", "GSM281934" ], "type": "genotype/variation", "id": "GDS3486_3" }, { "dataset_id": "GDS3486", "description": "GATA4 null", "sample_id": [ "GSM281929", "GSM281930", "GSM281931" ], "type": "genotype/variation", "id": "GDS3486_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3486", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3486.tab", "compression": "gz" } ], [ [ "GDS3487.tab" ], { "title": "Transcription factor CREB depletion effect on myeloid leukemic cell line", "description": "Analysis of myeloid leukemia K562 cells depleted for cAMP Response Element Binding Protein (CREB), a transcription factor. CREB is overexpressed in bone marrow samples of patients with acute leukemia. Results provides insight into the molecular mechanisms by which CREB contributes to acute leukemia.", "type": "Expression profiling by array", "pubmed_id": "18801183", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE12056", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3487", "description": "control", "sample_id": [ "GSM304303", "GSM304304", "GSM304479", "GSM304480", "GSM304481", "GSM304482", "GSM304483", "GSM304484", "GSM304486", "GSM304498" ], "type": "protocol", "id": "GDS3487_1" }, { "dataset_id": "GDS3487", "description": "CREB depletion", "sample_id": [ "GSM304487", "GSM304488", "GSM304489", "GSM304490", "GSM304491", "GSM304492", "GSM304493", "GSM304494", "GSM304495", "GSM304496" ], "type": "protocol", "id": "GDS3487_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3487", "version": 1.0, "instances": "20", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3487.tab", "compression": "gz" } ], [ [ "GDS3488.tab" ], { "title": "Adipose tissue response to dihydrotestosterone: time course", "description": "Analysis of retroperitoneal adipose tissue samples from gonadectomized males and females following treatment with dihydrotestosterone (DHT) for up to 24 hours. Results provide insight into the role of DHT in the adipogenesis that occurs in retroperitoneal adipose tissues.", "type": "Expression profiling by array", "pubmed_id": "18728228", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE9631", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3488", "description": "male", "sample_id": [ "GSM243411", "GSM243412", "GSM243413", "GSM243414", "GSM243415", "GSM243416", "GSM243417", "GSM243418" ], "type": "gender", "id": "GDS3488_1" }, { "dataset_id": "GDS3488", "description": "female", "sample_id": [ "GSM243419", "GSM243420", "GSM243421", "GSM243422", "GSM243423", "GSM243424", "GSM243425", "GSM243426" ], "type": "gender", "id": "GDS3488_2" }, { "dataset_id": "GDS3488", "description": "vehicle", "sample_id": [ "GSM243411", "GSM243412", "GSM243419", "GSM243420" ], "type": "agent", "id": "GDS3488_3" }, { "dataset_id": "GDS3488", "description": "DHT", "sample_id": [ "GSM243413", "GSM243414", "GSM243415", "GSM243416", "GSM243417", "GSM243418", "GSM243421", "GSM243422", "GSM243423", "GSM243424", "GSM243425", "GSM243426" ], "type": "agent", "id": "GDS3488_4" }, { "dataset_id": "GDS3488", "description": "control", "sample_id": [ "GSM243411", "GSM243412", "GSM243419", "GSM243420" ], "type": "time", "id": "GDS3488_5" }, { "dataset_id": "GDS3488", "description": "1 h", "sample_id": [ "GSM243413", "GSM243421" ], "type": "time", "id": "GDS3488_6" }, { "dataset_id": "GDS3488", "description": "3 h", "sample_id": [ "GSM243414", "GSM243422" ], "type": "time", "id": "GDS3488_7" }, { "dataset_id": "GDS3488", "description": "6 h", "sample_id": [ "GSM243415", "GSM243423" ], "type": "time", "id": "GDS3488_8" }, { "dataset_id": "GDS3488", "description": "12 h", "sample_id": [ "GSM243416", "GSM243424" ], "type": "time", "id": "GDS3488_9" }, { "dataset_id": "GDS3488", "description": "18 h", "sample_id": [ "GSM243417", "GSM243425" ], "type": "time", "id": "GDS3488_10" }, { "dataset_id": "GDS3488", "description": "24 h", "sample_id": [ "GSM243418", "GSM243426" ], "type": "time", "id": "GDS3488_11" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3488", "version": 1.0, "instances": "16", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3488.tab", "compression": "gz" } ], [ [ "GDS3489.tab" ], { "title": "CD133 depletion effect on metastatic melanoma cell line", "description": "Analysis of metastatic melanoma FEMX-I cells depleted for CD133. CD133 is a cancer stem cell-associated antigen expressed in many malignancies such as melanoma. Results provide insight into the role of CD133 in cancer progression.", "type": "Expression profiling by array", "pubmed_id": "18802032", "platform": "GPL7430", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "41964", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE13144", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3489", "description": "control", "sample_id": [ "GSM329155", "GSM329195" ], "type": "protocol", "id": "GDS3489_1" }, { "dataset_id": "GDS3489", "description": "CD133 depletion", "sample_id": [ "GSM329201", "GSM329202" ], "type": "protocol", "id": "GDS3489_2" } ], "taxid": "9606", "genes": 28124, "aggregation_function": "mean", "name": "GDS3489", "version": 1.0, "instances": "4", "variables": 28126, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3489.tab", "compression": "gz" } ], [ [ "GDS3490.tab" ], { "title": "Deaf-1 deficiency and overexpression effect on cultured mammary epithelial cells", "description": "Analysis of cultured mammary epithelial cells lacking or overexpressing the transcription factor Deaf-1. Deaf-1 is involved in mammary gland development and breast cancer. Results identify target genes of Deaf-1.", "type": "Expression profiling by array", "pubmed_id": "18826651", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE12367", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3490", "description": "Deaf-1 overexpression", "sample_id": [ "GSM310448", "GSM310450" ], "type": "protocol", "id": "GDS3490_1" }, { "dataset_id": "GDS3490", "description": "Deaf-1 deficiency", "sample_id": [ "GSM310449", "GSM310452" ], "type": "protocol", "id": "GDS3490_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3490", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3490.tab", "compression": "gz" } ], [ [ "GDS3491.tab" ], { "title": "Aire ectopic expression effect on pancreatic islet beta cells", "description": "Analysis of pancreatic islet beta cells ectopically expressing Aire. Aire promotes T cell tolerance by inducing the expression of genes encoding peripheral tissue antigens in medullary epithelial cells of the thymus. Results provide insight into the specificity of Aire's effect on transcription.", "type": "Expression profiling by array", "pubmed_id": "18780794", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12073", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3491", "description": "pancreatic beta cell", "sample_id": [ "GSM304902", "GSM304903", "GSM304904", "GSM304905", "GSM304906", "GSM304907" ], "type": "cell type", "id": "GDS3491_1" }, { "dataset_id": "GDS3491", "description": "medullary epithelial cell", "sample_id": [ "GSM304908", "GSM304909", "GSM304910", "GSM304911", "GSM304912", "GSM304913" ], "type": "cell type", "id": "GDS3491_2" }, { "dataset_id": "GDS3491", "description": "non-transgenic control", "sample_id": [ "GSM304902", "GSM304903", "GSM304904" ], "type": "genotype/variation", "id": "GDS3491_3" }, { "dataset_id": "GDS3491", "description": "transgenic Aire overexpressor", "sample_id": [ "GSM304905", "GSM304906", "GSM304907" ], "type": "genotype/variation", "id": "GDS3491_4" }, { "dataset_id": "GDS3491", "description": "wild type", "sample_id": [ "GSM304908", "GSM304909", "GSM304910" ], "type": "genotype/variation", "id": "GDS3491_5" }, { "dataset_id": "GDS3491", "description": "Aire null", "sample_id": [ "GSM304911", "GSM304912", "GSM304913" ], "type": "genotype/variation", "id": "GDS3491_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3491", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3491.tab", "compression": "gz" } ], [ [ "GDS3492.tab" ], { "title": "Senescent activated hepatic stellate cells", "description": "Analysis of activated hepatic stellate cells (HSCs) induced to senesce by treatment with a DNA-damaging agent. Upon activation in response to liver damage, HSCs proliferate and produce the extracellular matrix deposited in the fibrotic scar. Senescence of activated HSCs limits liver fibrosis.", "type": "Expression profiling by array", "pubmed_id": "18724938", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE11954", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3492", "description": "growing", "sample_id": [ "GSM302414", "GSM302416" ], "type": "cell type", "id": "GDS3492_1" }, { "dataset_id": "GDS3492", "description": "senescent", "sample_id": [ "GSM302415", "GSM302417" ], "type": "cell type", "id": "GDS3492_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3492", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3492.tab", "compression": "gz" } ], [ [ "GDS3493.tab" ], { "title": "Cigarette smoke of full flavor brand effect on bronchial epithelial cells in vitro: time course", "description": "Analysis of normal bronchial epithelial cells exposed to cigarette smoke from a typical full flavor brand for up to 24 hours. Results provide insight into the impact of cigarette smoke exposure at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "18694499", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE10718", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3493", "description": "control", "sample_id": [ "GSM270872", "GSM270873", "GSM270874", "GSM270875", "GSM270876", "GSM270878", "GSM270879", "GSM270880", "GSM270881", "GSM270882", "GSM270883", "GSM270884" ], "type": "agent", "id": "GDS3493_1" }, { "dataset_id": "GDS3493", "description": "cigarette smoke", "sample_id": [ "GSM270885", "GSM270886", "GSM270887", "GSM270888", "GSM270889", "GSM270890", "GSM270891", "GSM270892", "GSM270893", "GSM270894", "GSM270895", "GSM270896" ], "type": "agent", "id": "GDS3493_2" }, { "dataset_id": "GDS3493", "description": "1 h", "sample_id": [ "GSM270872", "GSM270873", "GSM270874", "GSM270885", "GSM270886", "GSM270887" ], "type": "time", "id": "GDS3493_3" }, { "dataset_id": "GDS3493", "description": "2 h", "sample_id": [ "GSM270875", "GSM270876", "GSM270878", "GSM270888", "GSM270889", "GSM270890" ], "type": "time", "id": "GDS3493_4" }, { "dataset_id": "GDS3493", "description": "4 h", "sample_id": [ "GSM270879", "GSM270880", "GSM270881", "GSM270891", "GSM270892", "GSM270893" ], "type": "time", "id": "GDS3493_5" }, { "dataset_id": "GDS3493", "description": "24 h", "sample_id": [ "GSM270882", "GSM270883", "GSM270884", "GSM270894", "GSM270895", "GSM270896" ], "type": "time", "id": "GDS3493_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3493", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3493.tab", "compression": "gz" } ], [ [ "GDS3494.tab" ], { "title": "Cigarette smoke of light flavor brand effect on bronchial epithelial cells in vitro: time course", "description": "Analysis of normal bronchial epithelial cells exposed to cigarette smoke from a typical light flavor brand for up to 24 hours. Results provide insight into the impact of cigarette smoke exposure at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "18694499", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE10700", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3494", "description": "mock control", "sample_id": [ "GSM270543", "GSM270544", "GSM270545", "GSM270546", "GSM270547", "GSM270548", "GSM270549", "GSM270550", "GSM270551", "GSM270552", "GSM270553", "GSM270554", "GSM270555", "GSM270556", "GSM270557", "GSM270558" ], "type": "agent", "id": "GDS3494_1" }, { "dataset_id": "GDS3494", "description": "2R4F reference cigarette", "sample_id": [ "GSM270559", "GSM270560", "GSM270561", "GSM270562", "GSM270563", "GSM270564", "GSM270565", "GSM270566", "GSM270567", "GSM270568", "GSM270569", "GSM270570", "GSM270571", "GSM270572", "GSM270573", "GSM270574" ], "type": "agent", "id": "GDS3494_2" }, { "dataset_id": "GDS3494", "description": "lights cigarette", "sample_id": [ "GSM270575", "GSM270576", "GSM270577", "GSM270578", "GSM270579", "GSM270580", "GSM270581", "GSM270582", "GSM270583", "GSM270584", "GSM270585", "GSM270586", "GSM270587", "GSM270588", "GSM270589", "GSM270590" ], "type": "agent", "id": "GDS3494_3" }, { "dataset_id": "GDS3494", "description": "incubator control", "sample_id": [ "GSM270591", "GSM270592", "GSM270593", "GSM270594" ], "type": "agent", "id": "GDS3494_4" }, { "dataset_id": "GDS3494", "description": "control", "sample_id": [ "GSM270591", "GSM270592", "GSM270593", "GSM270594" ], "type": "time", "id": "GDS3494_5" }, { "dataset_id": "GDS3494", "description": "2 h", "sample_id": [ "GSM270543", "GSM270544", "GSM270545", "GSM270546", "GSM270559", "GSM270560", "GSM270561", "GSM270562", "GSM270575", "GSM270576", "GSM270577", "GSM270578" ], "type": "time", "id": "GDS3494_6" }, { "dataset_id": "GDS3494", "description": "4 h", "sample_id": [ "GSM270547", "GSM270548", "GSM270549", "GSM270550", "GSM270563", "GSM270564", "GSM270565", "GSM270566", "GSM270579", "GSM270580", "GSM270581", "GSM270582" ], "type": "time", "id": "GDS3494_7" }, { "dataset_id": "GDS3494", "description": "8 h", "sample_id": [ "GSM270551", "GSM270552", "GSM270553", "GSM270554", "GSM270567", "GSM270568", "GSM270569", "GSM270570", "GSM270583", "GSM270584", "GSM270585", "GSM270586" ], "type": "time", "id": "GDS3494_8" }, { "dataset_id": "GDS3494", "description": "24 h", "sample_id": [ "GSM270555", "GSM270556", "GSM270557", "GSM270558", "GSM270571", "GSM270572", "GSM270573", "GSM270574", "GSM270587", "GSM270588", "GSM270589", "GSM270590" ], "type": "time", "id": "GDS3494_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3494", "version": 1.0, "instances": "52", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3494.tab", "compression": "gz" } ], [ [ "GDS3495.tab" ], { "title": "Progerin expression in a hTERT-immortalized skin fibroblast cell line: time course", "description": "Analysis of skin fibroblasts induced to express GFP-progerin for up to 10 days. Progerin is a mutant form of lamin A and the causal agent of premature-ageing disease Hutchinson-Gilford Progeria Syndrome (HGPS). Results provide insight into molecular mechanisms underlying this pathological effect.", "type": "Expression profiling by array", "pubmed_id": "18311132", "platform": "GPL2895", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "56448", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE10123", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3495", "description": "control", "sample_id": [ "GSM255774", "GSM255806", "GSM255807", "GSM255808", "GSM255809", "GSM255828" ], "type": "protocol", "id": "GDS3495_1" }, { "dataset_id": "GDS3495", "description": "progerin expression", "sample_id": [ "GSM255829", "GSM255830", "GSM255831", "GSM255832", "GSM255833", "GSM255834" ], "type": "protocol", "id": "GDS3495_2" }, { "dataset_id": "GDS3495", "description": "0 d", "sample_id": [ "GSM255774", "GSM255806", "GSM255829", "GSM255830" ], "type": "time", "id": "GDS3495_3" }, { "dataset_id": "GDS3495", "description": "5 d", "sample_id": [ "GSM255807", "GSM255808", "GSM255831", "GSM255832" ], "type": "time", "id": "GDS3495_4" }, { "dataset_id": "GDS3495", "description": "10 d", "sample_id": [ "GSM255809", "GSM255828", "GSM255833", "GSM255834" ], "type": "time", "id": "GDS3495_5" } ], "taxid": "9606", "genes": 45746, "aggregation_function": "mean", "name": "GDS3495", "version": 1.0, "instances": "12", "variables": 45749, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3495.tab", "compression": "gz" } ], [ [ "GDS3496.tab" ], { "title": "Alveolar macrophages of cigarette smokers", "description": "Analysis of alveolar macrophages from cigarette smokers. Cigarette smoking is associated with increased lung cell turnover. Mononuclear phagocytes, such as macrophages, play an important role in the removal of apoptotic cells.", "type": "Expression profiling by array", "pubmed_id": "18587056", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE8823", "order": "none", "update_date": "Dec 11 2008", "subsets": [ { "dataset_id": "GDS3496", "description": "non-smoker", "sample_id": [ "GSM219241", "GSM219242", "GSM219243", "GSM219244", "GSM219245", "GSM219246", "GSM219247", "GSM219248", "GSM219249", "GSM219250", "GSM219251" ], "type": "other", "id": "GDS3496_1" }, { "dataset_id": "GDS3496", "description": "smoker", "sample_id": [ "GSM219252", "GSM219253", "GSM219254", "GSM219255", "GSM219256", "GSM219257", "GSM219258", "GSM219259", "GSM219260", "GSM219261", "GSM219262", "GSM219263", "GSM219264" ], "type": "other", "id": "GDS3496_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3496", "version": 1.0, "instances": "24", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3496.tab", "compression": "gz" } ], [ [ "GDS3497.tab" ], { "title": "Interleukin-12 effect on peripheral blood mononuclear cells (HG-U133A)", "description": "Analysis of cultured peripheral blood mononuclear cells (PBMCs) stimulated with interleukin-12 (IL-12). PBMCs obtained from 7 donors. IL-12 plays a central role in adaptive and innate immunity. Results provide further insight into the effects of IL-12 on the immune response.", "type": "Expression profiling by array", "pubmed_id": "19001140", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE12839", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3497", "description": "control", "sample_id": [ "GSM322310", "GSM322312", "GSM322314", "GSM322316", "GSM322318", "GSM322320", "GSM322322" ], "type": "agent", "id": "GDS3497_1" }, { "dataset_id": "GDS3497", "description": "IL-12", "sample_id": [ "GSM322309", "GSM322311", "GSM322313", "GSM322315", "GSM322317", "GSM322319", "GSM322321" ], "type": "agent", "id": "GDS3497_2" }, { "dataset_id": "GDS3497", "description": "donor 541", "sample_id": [ "GSM322309", "GSM322310" ], "type": "individual", "id": "GDS3497_3" }, { "dataset_id": "GDS3497", "description": "donor 546", "sample_id": [ "GSM322311", "GSM322312" ], "type": "individual", "id": "GDS3497_4" }, { "dataset_id": "GDS3497", "description": "donor 1193", "sample_id": [ "GSM322313", "GSM322314" ], "type": "individual", "id": "GDS3497_5" }, { "dataset_id": "GDS3497", "description": "donor 2115", "sample_id": [ "GSM322315", "GSM322316" ], "type": "individual", "id": "GDS3497_6" }, { "dataset_id": "GDS3497", "description": "donor 635", "sample_id": [ "GSM322317", "GSM322318" ], "type": "individual", "id": "GDS3497_7" }, { "dataset_id": "GDS3497", "description": "donor 1769", "sample_id": [ "GSM322319", "GSM322320" ], "type": "individual", "id": "GDS3497_8" }, { "dataset_id": "GDS3497", "description": "donor 1775", "sample_id": [ "GSM322321", "GSM322322" ], "type": "individual", "id": "GDS3497_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3497", "version": 1.0, "instances": "14", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3497.tab", "compression": "gz" } ], [ [ "GDS3498.tab" ], { "title": "Interleukin-12 effect on peripheral blood mononuclear cells (HG-U133B)", "description": "Analysis of cultured peripheral blood mononuclear cells (PBMCs) stimulated with interleukin-12 (IL-12). PBMCs obtained from 7 donors. IL-12 plays a central role in adaptive and innate immunity. Results provide further insight into the effects of IL-12 on the immune response.", "type": "Expression profiling by array", "pubmed_id": "19001140", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE12839", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3498", "description": "control", "sample_id": [ "GSM322324", "GSM322326", "GSM322328", "GSM322330", "GSM322332", "GSM322334", "GSM322336" ], "type": "agent", "id": "GDS3498_1" }, { "dataset_id": "GDS3498", "description": "IL-12", "sample_id": [ "GSM322323", "GSM322325", "GSM322327", "GSM322329", "GSM322331", "GSM322333", "GSM322335" ], "type": "agent", "id": "GDS3498_2" }, { "dataset_id": "GDS3498", "description": "donor 541", "sample_id": [ "GSM322323", "GSM322324" ], "type": "individual", "id": "GDS3498_3" }, { "dataset_id": "GDS3498", "description": "donor 546", "sample_id": [ "GSM322325", "GSM322326" ], "type": "individual", "id": "GDS3498_4" }, { "dataset_id": "GDS3498", "description": "donor 1198", "sample_id": [ "GSM322327", "GSM322328" ], "type": "individual", "id": "GDS3498_5" }, { "dataset_id": "GDS3498", "description": "donor 2115", "sample_id": [ "GSM322329", "GSM322330" ], "type": "individual", "id": "GDS3498_6" }, { "dataset_id": "GDS3498", "description": "donor 635", "sample_id": [ "GSM322331", "GSM322332" ], "type": "individual", "id": "GDS3498_7" }, { "dataset_id": "GDS3498", "description": "donor 1769", "sample_id": [ "GSM322333", "GSM322334" ], "type": "individual", "id": "GDS3498_8" }, { "dataset_id": "GDS3498", "description": "donor 1775", "sample_id": [ "GSM322335", "GSM322336" ], "type": "individual", "id": "GDS3498_9" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3498", "version": 1.0, "instances": "14", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3498.tab", "compression": "gz" } ], [ [ "GDS3499.tab" ], { "title": "TREM-1 activation effect on monocytes in vitro", "description": "Analysis of cultured monocytes following TREM-1 activation by treatment with an antibody against TREM-1. TREM-1 is an immunoreceptor expressed on monocytes, macrophages, and neutrophils. Results provide insight into the cellular consequences of TREM-1 activation.", "type": "Expression profiling by array", "pubmed_id": "18292579", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "62", "value_type": "count", "reference_series": "GSE9988", "order": "none", "update_date": "Sep 14 2009", "subsets": [ { "dataset_id": "GDS3499", "description": "anti-Trem-1 Ab", "sample_id": [ "GSM252423", "GSM252424", "GSM252425", "GSM252426", "GSM252427", "GSM252428", "GSM252429", "GSM252430", "GSM252431", "GSM252432", "GSM252433" ], "type": "agent", "id": "GDS3499_1" }, { "dataset_id": "GDS3499", "description": "control Ab and LPS", "sample_id": [ "GSM252434", "GSM252435", "GSM252436", "GSM252437", "GSM252438", "GSM252439", "GSM252440", "GSM252441", "GSM252442" ], "type": "agent", "id": "GDS3499_2" }, { "dataset_id": "GDS3499", "description": "LPS", "sample_id": [ "GSM252443", "GSM252444", "GSM252445", "GSM252447", "GSM252448", "GSM252449", "GSM252450", "GSM252451", "GSM252452", "GSM252453", "GSM252454" ], "type": "agent", "id": "GDS3499_3" }, { "dataset_id": "GDS3499", "description": "anti-Trem-1 Ab and LPS", "sample_id": [ "GSM252455", "GSM252456", "GSM252457", "GSM252458", "GSM252459", "GSM252460", "GSM252461", "GSM252462", "GSM252463", "GSM252464" ], "type": "agent", "id": "GDS3499_4" }, { "dataset_id": "GDS3499", "description": "control Ab", "sample_id": [ "GSM252465", "GSM252466", "GSM252467", "GSM252468", "GSM252469", "GSM252470", "GSM252471", "GSM252472", "GSM252473", "GSM252474", "GSM252475" ], "type": "agent", "id": "GDS3499_5" }, { "dataset_id": "GDS3499", "description": "vehicle", "sample_id": [ "GSM252476", "GSM252477", "GSM252478", "GSM252479", "GSM252480", "GSM252481", "GSM252482", "GSM252483", "GSM252484", "GSM252485" ], "type": "agent", "id": "GDS3499_6" }, { "dataset_id": "GDS3499", "description": "donor 1", "sample_id": [ "GSM252423", "GSM252451", "GSM252464", "GSM252472", "GSM252485" ], "type": "individual", "id": "GDS3499_7" }, { "dataset_id": "GDS3499", "description": "donor 2", "sample_id": [ "GSM252429", "GSM252440", "GSM252448", "GSM252463", "GSM252466", "GSM252481" ], "type": "individual", "id": "GDS3499_8" }, { "dataset_id": "GDS3499", "description": "donor 3", "sample_id": [ "GSM252424", "GSM252441", "GSM252447", "GSM252461", "GSM252469", "GSM252480" ], "type": "individual", "id": "GDS3499_9" }, { "dataset_id": "GDS3499", "description": "donor 4", "sample_id": [ "GSM252432", "GSM252436", "GSM252444", "GSM252455", "GSM252475", "GSM252479" ], "type": "individual", "id": "GDS3499_10" }, { "dataset_id": "GDS3499", "description": "donor 5", "sample_id": [ "GSM252427", "GSM252435", "GSM252450", "GSM252458", "GSM252471", "GSM252482" ], "type": "individual", "id": "GDS3499_11" }, { "dataset_id": "GDS3499", "description": "donor 6", "sample_id": [ "GSM252431", "GSM252442", "GSM252452", "GSM252460", "GSM252465", "GSM252478" ], "type": "individual", "id": "GDS3499_12" }, { "dataset_id": "GDS3499", "description": "donor 7", "sample_id": [ "GSM252430", "GSM252439", "GSM252443", "GSM252457", "GSM252474", "GSM252483" ], "type": "individual", "id": "GDS3499_13" }, { "dataset_id": "GDS3499", "description": "donor 8", "sample_id": [ "GSM252433", "GSM252438", "GSM252454", "GSM252473", "GSM252477" ], "type": "individual", "id": "GDS3499_14" }, { "dataset_id": "GDS3499", "description": "donor 9", "sample_id": [ "GSM252426", "GSM252434", "GSM252449", "GSM252456", "GSM252468", "GSM252484" ], "type": "individual", "id": "GDS3499_15" }, { "dataset_id": "GDS3499", "description": "donor 10", "sample_id": [ "GSM252428", "GSM252437", "GSM252445", "GSM252462", "GSM252470" ], "type": "individual", "id": "GDS3499_16" }, { "dataset_id": "GDS3499", "description": "donor 11", "sample_id": [ "GSM252425", "GSM252453", "GSM252459", "GSM252467", "GSM252476" ], "type": "individual", "id": "GDS3499_17" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3499", "version": 1.0, "instances": "62", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3499.tab", "compression": "gz" } ], [ [ "GDS35.tab" ], { "title": "Heat shock, mild, at variable osmolarity", "description": "Heat shock from 29\u00b0C to 33\u00b0C, with or without addition of 1 M sorbitol. Samples collected at 5, 15 and 30 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL56", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8448", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE18", "order": "none", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS35", "description": "sorbitol", "sample_id": [ "GSM934", "GSM935", "GSM936" ], "type": "agent", "id": "GDS35_1" }, { "dataset_id": "GDS35", "description": "no sorbitol", "sample_id": [ "GSM937", "GSM1024", "GSM1025" ], "type": "agent", "id": "GDS35_2" }, { "dataset_id": "GDS35", "description": "5 minute", "sample_id": [ "GSM934", "GSM1025" ], "type": "time", "id": "GDS35_3" }, { "dataset_id": "GDS35", "description": "15 minute", "sample_id": [ "GSM935", "GSM937" ], "type": "time", "id": "GDS35_4" }, { "dataset_id": "GDS35", "description": "30 minute", "sample_id": [ "GSM936", "GSM1024" ], "type": "time", "id": "GDS35_5" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS35", "version": 1.0, "instances": "6", "variables": 6378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS35.tab", "compression": "gz" } ], [ [ "GDS3500.tab" ], { "title": "Cryptosporidium infection effect on intestinal epithelial cells in vitro", "description": "Analysis of cultured intestinal epithelial cells infected with Cryptosporidium hominis or parvum. Cryptosporidium parasites are pathogens of human intestinal epithelial cells. Results provide insight into the early pathogenesis of Cryptosporidium infection.", "type": "Expression profiling by array", "pubmed_id": "18288900", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE7268", "order": "none", "update_date": "Dec 16 2008", "subsets": [ { "dataset_id": "GDS3500", "description": "subject 1", "sample_id": [ "GSM175249", "GSM175250", "GSM175251", "GSM175252" ], "type": "individual", "id": "GDS3500_1" }, { "dataset_id": "GDS3500", "description": "subject 2", "sample_id": [ "GSM175253", "GSM175254", "GSM175255" ], "type": "individual", "id": "GDS3500_2" }, { "dataset_id": "GDS3500", "description": "subject 3", "sample_id": [ "GSM175256", "GSM175257", "GSM175258", "GSM175259" ], "type": "individual", "id": "GDS3500_3" }, { "dataset_id": "GDS3500", "description": "baseline uninfected control", "sample_id": [ "GSM175249", "GSM175253", "GSM175256" ], "type": "infection", "id": "GDS3500_4" }, { "dataset_id": "GDS3500", "description": "C. hominis", "sample_id": [ "GSM175250", "GSM175257" ], "type": "infection", "id": "GDS3500_5" }, { "dataset_id": "GDS3500", "description": "C. parvum", "sample_id": [ "GSM175252", "GSM175255", "GSM175259" ], "type": "infection", "id": "GDS3500_6" }, { "dataset_id": "GDS3500", "description": "excystation solution control", "sample_id": [ "GSM175251", "GSM175254", "GSM175258" ], "type": "infection", "id": "GDS3500_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3500", "version": 1.0, "instances": "11", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3500.tab", "compression": "gz" } ], [ [ "GDS3501.tab" ], { "title": "Synchronous and metachronous liver metastases from colorectal cancer", "description": "Analysis of synchronous and metachronous liver metastatic lesions from colorectal cancer (CC). The liver is a common site of metastases from CC. Synchronous metastatic lesions arise less than 6 months after the resection of the primary tumor, metachronous lesions arise 6 months after resection.", "type": "Expression profiling by array", "pubmed_id": "18827815", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE10961", "order": "none", "update_date": "Dec 23 2008", "subsets": [ { "dataset_id": "GDS3501", "description": "metachronous metastasis", "sample_id": [ "GSM277231", "GSM277236", "GSM277238", "GSM277239", "GSM277246", "GSM277248", "GSM277253", "GSM277256" ], "type": "disease state", "id": "GDS3501_1" }, { "dataset_id": "GDS3501", "description": "synchronous metastasis", "sample_id": [ "GSM277466", "GSM277469", "GSM277477", "GSM277478", "GSM277479", "GSM277481", "GSM277494", "GSM277646", "GSM277647", "GSM277648" ], "type": "disease state", "id": "GDS3501_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3501", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3501.tab", "compression": "gz" } ], [ [ "GDS3502.tab" ], { "title": "Schizophrenia: endothelial and neuronal cells from postmortem dorsolateral prefrontal cortex tissue", "description": "Analysis of LCM-captured microvascular endothelial cells and neurons from post mortem brain tissue from schizophrenia patients, bipolar disorder patients, and healthy controls. Results provide insight into molecular mechanisms underlying the pathophysiology of schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "19088852", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE12679", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3502", "description": "endothelial cell", "sample_id": [ "GSM318410", "GSM318411", "GSM318414", "GSM318415", "GSM318416", "GSM318417", "GSM318418", "GSM318419", "GSM318420", "GSM318421", "GSM318422", "GSM318423", "GSM318424", "GSM318425", "GSM318426", "GSM318427" ], "type": "cell type", "id": "GDS3502_1" }, { "dataset_id": "GDS3502", "description": "neuron", "sample_id": [ "GSM318412", "GSM318413", "GSM318428", "GSM318429", "GSM318430", "GSM318431", "GSM318432", "GSM318433", "GSM318434", "GSM318435", "GSM318436", "GSM318437", "GSM318438", "GSM318439", "GSM318440", "GSM318441" ], "type": "cell type", "id": "GDS3502_2" }, { "dataset_id": "GDS3502", "description": "control", "sample_id": [ "GSM318415", "GSM318419", "GSM318425", "GSM318426", "GSM318427", "GSM318428", "GSM318429", "GSM318433", "GSM318436", "GSM318440", "GSM318441" ], "type": "disease state", "id": "GDS3502_3" }, { "dataset_id": "GDS3502", "description": "schizophrenia", "sample_id": [ "GSM318410", "GSM318411", "GSM318412", "GSM318413", "GSM318414", "GSM318416", "GSM318417", "GSM318418", "GSM318420", "GSM318421", "GSM318422", "GSM318423", "GSM318424", "GSM318430", "GSM318438", "GSM318439" ], "type": "disease state", "id": "GDS3502_4" }, { "dataset_id": "GDS3502", "description": "bipolar disorder", "sample_id": [ "GSM318431", "GSM318432", "GSM318434", "GSM318435", "GSM318437" ], "type": "disease state", "id": "GDS3502_5" }, { "dataset_id": "GDS3502", "description": "male", "sample_id": [ "GSM318410", "GSM318411", "GSM318412", "GSM318413", "GSM318414", "GSM318415", "GSM318416", "GSM318417", "GSM318418", "GSM318420", "GSM318424", "GSM318425", "GSM318426", "GSM318427", "GSM318428", "GSM318432", "GSM318433", "GSM318434", "GSM318435", "GSM318436", "GSM318437", "GSM318438", "GSM318440" ], "type": "gender", "id": "GDS3502_6" }, { "dataset_id": "GDS3502", "description": "female", "sample_id": [ "GSM318419", "GSM318421", "GSM318422", "GSM318423", "GSM318429", "GSM318430", "GSM318431", "GSM318439", "GSM318441" ], "type": "gender", "id": "GDS3502_7" }, { "dataset_id": "GDS3502", "description": "19 y", "sample_id": [ "GSM318420" ], "type": "age", "id": "GDS3502_8" }, { "dataset_id": "GDS3502", "description": "32 y", "sample_id": [ "GSM318415", "GSM318436" ], "type": "age", "id": "GDS3502_9" }, { "dataset_id": "GDS3502", "description": "34 y", "sample_id": [ "GSM318427", "GSM318440" ], "type": "age", "id": "GDS3502_10" }, { "dataset_id": "GDS3502", "description": "35 y", "sample_id": [ "GSM318434" ], "type": "age", "id": "GDS3502_11" }, { "dataset_id": "GDS3502", "description": "37 y", "sample_id": [ "GSM318411", "GSM318413" ], "type": "age", "id": "GDS3502_12" }, { "dataset_id": "GDS3502", "description": "39 y", "sample_id": [ "GSM318429" ], "type": "age", "id": "GDS3502_13" }, { "dataset_id": "GDS3502", "description": "41 y", "sample_id": [ "GSM318431" ], "type": "age", "id": "GDS3502_14" }, { "dataset_id": "GDS3502", "description": "42 y", "sample_id": [ "GSM318414", "GSM318424", "GSM318437" ], "type": "age", "id": "GDS3502_15" }, { "dataset_id": "GDS3502", "description": "44 y", "sample_id": [ "GSM318416", "GSM318419", "GSM318430" ], "type": "age", "id": "GDS3502_16" }, { "dataset_id": "GDS3502", "description": "45 y", "sample_id": [ "GSM318410", "GSM318412", "GSM318418" ], "type": "age", "id": "GDS3502_17" }, { "dataset_id": "GDS3502", "description": "46 y", "sample_id": [ "GSM318433" ], "type": "age", "id": "GDS3502_18" }, { "dataset_id": "GDS3502", "description": "47 y", "sample_id": [ "GSM318421", "GSM318423", "GSM318425", "GSM318428", "GSM318439" ], "type": "age", "id": "GDS3502_19" }, { "dataset_id": "GDS3502", "description": "48 y", "sample_id": [ "GSM318432" ], "type": "age", "id": "GDS3502_20" }, { "dataset_id": "GDS3502", "description": "49 y", "sample_id": [ "GSM318441" ], "type": "age", "id": "GDS3502_21" }, { "dataset_id": "GDS3502", "description": "51 y", "sample_id": [ "GSM318435" ], "type": "age", "id": "GDS3502_22" }, { "dataset_id": "GDS3502", "description": "52 y", "sample_id": [ "GSM318438" ], "type": "age", "id": "GDS3502_23" }, { "dataset_id": "GDS3502", "description": "54 y", "sample_id": [ "GSM318417", "GSM318422" ], "type": "age", "id": "GDS3502_24" }, { "dataset_id": "GDS3502", "description": "55 y", "sample_id": [ "GSM318426" ], "type": "age", "id": "GDS3502_25" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3502", "version": 1.0, "instances": "32", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3502.tab", "compression": "gz" } ], [ [ "GDS3503.tab" ], { "title": "Endothelial progenitor cell response to exercise", "description": "Analysis of peripheral blood mononuclear cells collected from 12 healthy subjects at baseline and after 3 months of exercise, then cultured for the endothelial progenitor cell-colony forming units (EPC-CFUs) assay. Results provide insight into EPC phenotype and relevance to endothelial function.", "type": "Expression profiling by array", "pubmed_id": "19092138", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE12155", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3503", "description": "before exercise", "sample_id": [ "GSM306062", "GSM306064", "GSM306066", "GSM306068", "GSM306070", "GSM306072", "GSM306074", "GSM306076", "GSM306078", "GSM306080", "GSM306082", "GSM306084" ], "type": "protocol", "id": "GDS3503_1" }, { "dataset_id": "GDS3503", "description": "after exercise", "sample_id": [ "GSM306063", "GSM306065", "GSM306067", "GSM306069", "GSM306071", "GSM306073", "GSM306075", "GSM306077", "GSM306079", "GSM306081", "GSM306083", "GSM306085" ], "type": "protocol", "id": "GDS3503_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3503", "version": 1.0, "instances": "24", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3503.tab", "compression": "gz" } ], [ [ "GDS3504.tab" ], { "title": "Dendritic cell response to 2,3,7,8-tetrachlorodibenzo-p-dioxin-induced aryl hydrocarbon receptor activation", "description": "Analysis of MACS-sorted splenic dendritic cells (DC) from aryl hydrocarbon receptor (AHR) +/+, C57BL6 females after 24hr in vivo treatment with TCDD. The TCDD ligand is an AHR agonist and a potent immunotoxicant. Results provide insight into the consequences of TCDD-induced AHR activation in DCs.", "type": "Expression profiling by array", "pubmed_id": "16972790", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE13719", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3504", "description": "control", "sample_id": [ "GSM255752", "GSM255756" ], "type": "agent", "id": "GDS3504_1" }, { "dataset_id": "GDS3504", "description": "TCDD", "sample_id": [ "GSM255757", "GSM255758" ], "type": "agent", "id": "GDS3504_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3504", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3504.tab", "compression": "gz" } ], [ [ "GDS3505.tab" ], { "title": "Seedling roots response to auxin and ethylene availability", "description": "Analysis of roots of aux1-7 seedlings treated with ethylene (ETH) and those of ein2-5 seedlings with auxin. Aux1-7 roots are defective in auxin influx but resistant to ETH. Ein2-5 roots are insensitive to ETH but responsive to auxin. Results provide insight into auxin and ETH interactions in roots.", "type": "Expression profiling by array", "pubmed_id": "17630276", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE7432", "order": "none", "update_date": "Mar 18 2009", "subsets": [ { "dataset_id": "GDS3505", "description": "wild type", "sample_id": [ "GSM179958", "GSM179959", "GSM179960", "GSM179961", "GSM179971", "GSM179972", "GSM179973", "GSM179974" ], "type": "genotype/variation", "id": "GDS3505_1" }, { "dataset_id": "GDS3505", "description": "aux1 mutant", "sample_id": [ "GSM179963", "GSM179967", "GSM179969", "GSM179970" ], "type": "genotype/variation", "id": "GDS3505_2" }, { "dataset_id": "GDS3505", "description": "ein2 mutant", "sample_id": [ "GSM179975", "GSM179976", "GSM179977", "GSM179978" ], "type": "genotype/variation", "id": "GDS3505_3" }, { "dataset_id": "GDS3505", "description": "control", "sample_id": [ "GSM179958", "GSM179959", "GSM179963", "GSM179967", "GSM179971", "GSM179972", "GSM179975", "GSM179976" ], "type": "agent", "id": "GDS3505_4" }, { "dataset_id": "GDS3505", "description": "ethylene", "sample_id": [ "GSM179960", "GSM179961", "GSM179969", "GSM179970" ], "type": "agent", "id": "GDS3505_5" }, { "dataset_id": "GDS3505", "description": "auxin", "sample_id": [ "GSM179973", "GSM179974", "GSM179977", "GSM179978" ], "type": "agent", "id": "GDS3505_6" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3505", "version": 1.0, "instances": "16", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3505.tab", "compression": "gz" } ], [ [ "GDS3506.tab" ], { "title": "Humanized gnotobiotic mouse model response to foodborne enteropathogen Listeria monocytogenes: ileum", "description": "Analysis of ileum from human enterocyte-associated E-cadherin receptor-expressing, germ-free transgenic mice (Fabpi-hEcad) colonized with wildtype L. monocytogenes or mutant strains with inlA, inlB, hly deletions. Results provide insight into host response to invasive foodborne enteropathogens.", "type": "Expression profiling by array", "pubmed_id": "17389602", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE7013", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3506", "description": "L. monocytogenes wildtype", "sample_id": [ "GSM161223", "GSM161226", "GSM161570", "GSM161571" ], "type": "infection", "id": "GDS3506_1" }, { "dataset_id": "GDS3506", "description": "L. monocytogenes (\u0394 hly)", "sample_id": [ "GSM161197", "GSM161219" ], "type": "infection", "id": "GDS3506_2" }, { "dataset_id": "GDS3506", "description": "L. monocytogenes (\u0394 inlA)", "sample_id": [ "GSM161566", "GSM161567" ], "type": "infection", "id": "GDS3506_3" }, { "dataset_id": "GDS3506", "description": "L. monocytogenes (\u0394 inlAB)", "sample_id": [ "GSM161577", "GSM161579" ], "type": "infection", "id": "GDS3506_4" }, { "dataset_id": "GDS3506", "description": "L. innocua wildtype", "sample_id": [ "GSM161568", "GSM161569" ], "type": "infection", "id": "GDS3506_5" }, { "dataset_id": "GDS3506", "description": "L. innocua (hly)", "sample_id": [ "GSM161584", "GSM161585" ], "type": "infection", "id": "GDS3506_6" }, { "dataset_id": "GDS3506", "description": "L. innocua (inlA)", "sample_id": [ "GSM161586", "GSM161587" ], "type": "infection", "id": "GDS3506_7" }, { "dataset_id": "GDS3506", "description": "Bacteroides thetaiotaomicron", "sample_id": [ "GSM161588", "GSM161589" ], "type": "infection", "id": "GDS3506_8" }, { "dataset_id": "GDS3506", "description": "control", "sample_id": [ "GSM161581", "GSM161582" ], "type": "infection", "id": "GDS3506_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3506", "version": 1.0, "instances": "20", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3506.tab", "compression": "gz" } ], [ [ "GDS3507.tab" ], { "title": "Spinal cord injury effect on the urinary bladder: time course", "description": "Analysis of bladders from Sprague-Dawley females for up to 25 days following spinal cord injury (SCI). Bladder wall tissue compliance increases within 2 weeks after SCI in this animal model. Results provide insight into the molecular basis of the changes that the bladder undergoes after SCI.", "type": "Expression profiling by array", "pubmed_id": "16038877", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE14096", "order": "none", "update_date": "May 18 2015", "subsets": [ { "dataset_id": "GDS3507", "description": "uninjured", "sample_id": [ "GSM353862" ], "type": "disease state", "id": "GDS3507_1" }, { "dataset_id": "GDS3507", "description": "spinal cord injury", "sample_id": [ "GSM353864", "GSM353865", "GSM353866" ], "type": "disease state", "id": "GDS3507_2" }, { "dataset_id": "GDS3507", "description": "control", "sample_id": [ "GSM353862" ], "type": "time", "id": "GDS3507_3" }, { "dataset_id": "GDS3507", "description": "3 d", "sample_id": [ "GSM353864" ], "type": "time", "id": "GDS3507_4" }, { "dataset_id": "GDS3507", "description": "7 d", "sample_id": [ "GSM353865" ], "type": "time", "id": "GDS3507_5" }, { "dataset_id": "GDS3507", "description": "25 d", "sample_id": [ "GSM353866" ], "type": "time", "id": "GDS3507_6" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3507", "version": 1.0, "instances": "4", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3507.tab", "compression": "gz" } ], [ [ "GDS3508.tab" ], { "title": "Hormone-sensitive lipase deficient liver response to a high fat diet", "description": "Analysis of livers from hormone-sensitive lipase (HSL) null mutants fed a high fat diet. Decreased hepatic insulin sensitivity and elevation of plasma cholesterol are observed in this HSL-null animal model. Results provide insight into the mechanisms underlying these features.", "type": "Expression profiling by array", "pubmed_id": "18664600", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10067", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3508", "description": "wild type", "sample_id": [ "GSM254439", "GSM254440" ], "type": "genotype/variation", "id": "GDS3508_1" }, { "dataset_id": "GDS3508", "description": "HSL null", "sample_id": [ "GSM254441", "GSM254442" ], "type": "genotype/variation", "id": "GDS3508_2" }, { "dataset_id": "GDS3508", "description": "normal diet", "sample_id": [ "GSM254439", "GSM254441" ], "type": "protocol", "id": "GDS3508_3" }, { "dataset_id": "GDS3508", "description": "high fat diet", "sample_id": [ "GSM254440", "GSM254442" ], "type": "protocol", "id": "GDS3508_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3508", "version": 1.0, "instances": "4", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3508.tab", "compression": "gz" } ], [ [ "GDS3509.tab" ], { "title": "Transcription factor Klf5 deficiency effect on embryonic stem cells", "description": "Analysis of embryonic stem cells (ESCs) lacking the transcription factor Klf5. Klf5 deficiency results in the failure of ESC derivation from cells of the inner cell mass and early embryonic lethality. Results provide insight into the role of Klf5 in blastocyst development and ESC self-renewal.", "type": "Expression profiling by array", "pubmed_id": "18983969", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE9244", "order": "none", "update_date": "Jan 03 2009", "subsets": [ { "dataset_id": "GDS3509", "description": "wild type", "sample_id": [ "GSM234772", "GSM234773" ], "type": "genotype/variation", "id": "GDS3509_1" }, { "dataset_id": "GDS3509", "description": "Klf5 null", "sample_id": [ "GSM234774", "GSM234775" ], "type": "genotype/variation", "id": "GDS3509_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3509", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3509.tab", "compression": "gz" } ], [ [ "GDS3510.tab" ], { "title": "Claudin-1 overexpression effect on lung adenocarcinoma cell line", "description": "Analysis of lung adenocarcinoma CL1-5 cells overexpressing Claudin-1 (CLDN1), a component of tight junction complexes. Low CLDN1 expression in lung adenocarcinomas is associated with shorter overall survival. Results provide insight into the role of CLDN1 in the progression of lung adenocarcinoma.", "type": "Expression profiling by array", "pubmed_id": "18787218", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE10309", "order": "none", "update_date": "Jan 03 2009", "subsets": [ { "dataset_id": "GDS3510", "description": "control", "sample_id": [ "GSM260533", "GSM260534" ], "type": "protocol", "id": "GDS3510_1" }, { "dataset_id": "GDS3510", "description": "CLDN1 overexpression", "sample_id": [ "GSM260535", "GSM260536" ], "type": "protocol", "id": "GDS3510_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3510", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3510.tab", "compression": "gz" } ], [ [ "GDS3511.tab" ], { "title": "HIV-1 infection effect on macrophages in vitro: time course", "description": "Analysis of cultured macrophages for up to 7 days after HIV-1 infection. Macrophages are targets of HIV-1 infection and constitute a viral reservoir that facilitates the spread of HIV-1 to other cells. Results provide insight into the signaling networks affected by HIV-1 infection in macrophages.", "type": "Expression profiling by array", "pubmed_id": "19048100", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE13395", "order": "none", "update_date": "Jan 04 2009", "subsets": [ { "dataset_id": "GDS3511", "description": "mock", "sample_id": [ "GSM338258", "GSM338259", "GSM338262", "GSM338263", "GSM338267", "GSM338268", "GSM338269", "GSM338271" ], "type": "infection", "id": "GDS3511_1" }, { "dataset_id": "GDS3511", "description": "HIV-1", "sample_id": [ "GSM338256", "GSM338257", "GSM338260", "GSM338261", "GSM338264", "GSM338265", "GSM338266", "GSM338270" ], "type": "infection", "id": "GDS3511_2" }, { "dataset_id": "GDS3511", "description": "2 d", "sample_id": [ "GSM338264", "GSM338267", "GSM338270", "GSM338271" ], "type": "time", "id": "GDS3511_3" }, { "dataset_id": "GDS3511", "description": "4 d", "sample_id": [ "GSM338256", "GSM338258", "GSM338260", "GSM338262", "GSM338265", "GSM338268" ], "type": "time", "id": "GDS3511_4" }, { "dataset_id": "GDS3511", "description": "7 d", "sample_id": [ "GSM338257", "GSM338259", "GSM338261", "GSM338263", "GSM338266", "GSM338269" ], "type": "time", "id": "GDS3511_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3511", "version": 1.0, "instances": "16", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3511.tab", "compression": "gz" } ], [ [ "GDS3512.tab" ], { "title": "Furin deficiency effect on T-cells", "description": "Analysis of T-cells lacking the proprotein convertase furin. Proprotein convertases promote the proteolytic maturation of proproteins. Furin is induced in activated T-cells. Results provide insight into the function of furin in T-cells.", "type": "Expression profiling by array", "pubmed_id": [ "18701887", "25926688" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE11884", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3512", "description": "wild type", "sample_id": [ "GSM300153", "GSM300154" ], "type": "genotype/variation", "id": "GDS3512_1" }, { "dataset_id": "GDS3512", "description": "furin null", "sample_id": [ "GSM300155", "GSM300156" ], "type": "genotype/variation", "id": "GDS3512_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3512", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3512.tab", "compression": "gz" } ], [ [ "GDS3513.tab" ], { "title": "Embryonic stem cell-derived cardiomyocytes", "description": "Analysis of cardiomyocytes (CMs) derived from embryonic stem cells (ESCs). Under the appropriate conditions, ex vivo ESCs can differentiate into beating cardiomyocytes via an embryoid body (EB) intermediate. Results provide insight into the mechanisms underlying the differentiation of ESC into CMs.", "type": "Expression profiling by array", "pubmed_id": "18941512", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log10 ratio", "reference_series": "GSE13834", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3513", "description": "ESCs", "sample_id": [ "GSM348001", "GSM348002", "GSM348003", "GSM348004" ], "type": "cell type", "id": "GDS3513_1" }, { "dataset_id": "GDS3513", "description": "embryoid bodies w/ beating CMs", "sample_id": [ "GSM348005", "GSM348006", "GSM348007", "GSM348008" ], "type": "cell type", "id": "GDS3513_2" }, { "dataset_id": "GDS3513", "description": "CMs from ESCs", "sample_id": [ "GSM348009", "GSM348010", "GSM348011", "GSM348012" ], "type": "cell type", "id": "GDS3513_3" }, { "dataset_id": "GDS3513", "description": "CMs from fetal hearts", "sample_id": [ "GSM348013", "GSM348014", "GSM348015", "GSM348016" ], "type": "cell type", "id": "GDS3513_4" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS3513", "version": 1.0, "instances": "16", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3513.tab", "compression": "gz" } ], [ [ "GDS3514.tab" ], { "title": "Liposarcoma response to doxorubicin in vitro", "description": "Analysis of various types of liposarcomas treated with doxorubicin in vitro. While doxorubicin is an established chemotherapeutic for treating liposarcomas, the response to this drug is low. Results provide insight into the molecular basis of the resistance of liposarcomas to doxorubicin.", "type": "Expression profiling by array", "pubmed_id": "18959781", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "count", "reference_series": "GSE12972", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3514", "description": "tumor 314", "sample_id": [ "GSM325240", "GSM325241" ], "type": "specimen", "id": "GDS3514_1" }, { "dataset_id": "GDS3514", "description": "tumor 387", "sample_id": [ "GSM325242", "GSM325243" ], "type": "specimen", "id": "GDS3514_2" }, { "dataset_id": "GDS3514", "description": "tumor 400", "sample_id": [ "GSM325244", "GSM325245" ], "type": "specimen", "id": "GDS3514_3" }, { "dataset_id": "GDS3514", "description": "tumor 391", "sample_id": [ "GSM325246", "GSM325247" ], "type": "specimen", "id": "GDS3514_4" }, { "dataset_id": "GDS3514", "description": "tumor 338", "sample_id": [ "GSM325248", "GSM325249" ], "type": "specimen", "id": "GDS3514_5" }, { "dataset_id": "GDS3514", "description": "tumor 385", "sample_id": [ "GSM325250", "GSM325251" ], "type": "specimen", "id": "GDS3514_6" }, { "dataset_id": "GDS3514", "description": "tumor 394", "sample_id": [ "GSM325252", "GSM325253" ], "type": "specimen", "id": "GDS3514_7" }, { "dataset_id": "GDS3514", "description": "tumor 340", "sample_id": [ "GSM325254", "GSM325255" ], "type": "specimen", "id": "GDS3514_8" }, { "dataset_id": "GDS3514", "description": "tumor 401", "sample_id": [ "GSM325256", "GSM325257" ], "type": "specimen", "id": "GDS3514_9" }, { "dataset_id": "GDS3514", "description": "tumor 393", "sample_id": [ "GSM325258", "GSM325259" ], "type": "specimen", "id": "GDS3514_10" }, { "dataset_id": "GDS3514", "description": "tumor 392", "sample_id": [ "GSM325260", "GSM325261" ], "type": "specimen", "id": "GDS3514_11" }, { "dataset_id": "GDS3514", "description": "tumor 399", "sample_id": [ "GSM325262", "GSM325263" ], "type": "specimen", "id": "GDS3514_12" }, { "dataset_id": "GDS3514", "description": "tumor 388", "sample_id": [ "GSM325264", "GSM325265" ], "type": "specimen", "id": "GDS3514_13" }, { "dataset_id": "GDS3514", "description": "tumor 377", "sample_id": [ "GSM325266", "GSM325267" ], "type": "specimen", "id": "GDS3514_14" }, { "dataset_id": "GDS3514", "description": "tumor 389", "sample_id": [ "GSM325268", "GSM325269" ], "type": "specimen", "id": "GDS3514_15" }, { "dataset_id": "GDS3514", "description": "tumor 379", "sample_id": [ "GSM325270", "GSM325271" ], "type": "specimen", "id": "GDS3514_16" }, { "dataset_id": "GDS3514", "description": "tumor 386", "sample_id": [ "GSM325272", "GSM325273" ], "type": "specimen", "id": "GDS3514_17" }, { "dataset_id": "GDS3514", "description": "tumor 398", "sample_id": [ "GSM325274", "GSM325275" ], "type": "specimen", "id": "GDS3514_18" }, { "dataset_id": "GDS3514", "description": "tumor 337", "sample_id": [ "GSM325276", "GSM325277" ], "type": "specimen", "id": "GDS3514_19" }, { "dataset_id": "GDS3514", "description": "untreated", "sample_id": [ "GSM325240", "GSM325242", "GSM325244", "GSM325246", "GSM325248", "GSM325250", "GSM325252", "GSM325254", "GSM325256", "GSM325258", "GSM325260", "GSM325262", "GSM325264", "GSM325266", "GSM325268", "GSM325270", "GSM325272", "GSM325274", "GSM325276" ], "type": "agent", "id": "GDS3514_20" }, { "dataset_id": "GDS3514", "description": "doxorubicin", "sample_id": [ "GSM325241", "GSM325243", "GSM325245", "GSM325247", "GSM325249", "GSM325251", "GSM325253", "GSM325255", "GSM325257", "GSM325259", "GSM325261", "GSM325263", "GSM325265", "GSM325267", "GSM325269", "GSM325271", "GSM325273", "GSM325275", "GSM325277" ], "type": "agent", "id": "GDS3514_21" }, { "dataset_id": "GDS3514", "description": "grade 1", "sample_id": [ "GSM325244", "GSM325245", "GSM325246", "GSM325247", "GSM325248", "GSM325249", "GSM325252", "GSM325253" ], "type": "development stage", "id": "GDS3514_22" }, { "dataset_id": "GDS3514", "description": "grade 2", "sample_id": [ "GSM325241", "GSM325243", "GSM325251", "GSM325255", "GSM325257", "GSM325259", "GSM325261", "GSM325263", "GSM325240", "GSM325242", "GSM325250", "GSM325254", "GSM325256", "GSM325258", "GSM325260", "GSM325262" ], "type": "development stage", "id": "GDS3514_23" }, { "dataset_id": "GDS3514", "description": "grade 3", "sample_id": [ "GSM325265", "GSM325267", "GSM325269", "GSM325271", "GSM325273", "GSM325275", "GSM325277", "GSM325264", "GSM325266", "GSM325268", "GSM325270", "GSM325272", "GSM325274", "GSM325276" ], "type": "development stage", "id": "GDS3514_24" }, { "dataset_id": "GDS3514", "description": "atypical", "sample_id": [ "GSM325245", "GSM325247", "GSM325249", "GSM325253", "GSM325244", "GSM325246", "GSM325248", "GSM325252", "GSM325243", "GSM325242" ], "type": "disease state", "id": "GDS3514_25" }, { "dataset_id": "GDS3514", "description": "atypical, dedifferentiated", "sample_id": [ "GSM325240", "GSM325241", "GSM325262", "GSM325263" ], "type": "disease state", "id": "GDS3514_26" }, { "dataset_id": "GDS3514", "description": "dedifferentiated", "sample_id": [ "GSM325254", "GSM325255", "GSM325256", "GSM325257", "GSM325260", "GSM325261", "GSM325264", "GSM325265" ], "type": "disease state", "id": "GDS3514_27" }, { "dataset_id": "GDS3514", "description": "myxoid", "sample_id": [ "GSM325266", "GSM325267" ], "type": "disease state", "id": "GDS3514_28" }, { "dataset_id": "GDS3514", "description": "myxoid-round", "sample_id": [ "GSM325250", "GSM325251", "GSM325270", "GSM325271", "GSM325276", "GSM325277" ], "type": "disease state", "id": "GDS3514_29" }, { "dataset_id": "GDS3514", "description": "pleomorphic", "sample_id": [ "GSM325258", "GSM325259", "GSM325268", "GSM325269", "GSM325272", "GSM325273", "GSM325274", "GSM325275" ], "type": "disease state", "id": "GDS3514_30" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3514", "version": 1.0, "instances": "38", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3514.tab", "compression": "gz" } ], [ [ "GDS3515.tab" ], { "title": "Huntington's disease htt-171-82Q in vitro model: striatal neurons", "description": "Analysis of cultured primary striatal neurons expressing the N-terminal 171 residues of the Huntingtin protein along with 82 glutamine residues (htt-171-82Q), which is a pathological number of glutamines. Results provide insight into the molecular pathogenesis of Huntington's disease.", "type": "Expression profiling by array", "pubmed_id": "18815258", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE12481", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3515", "description": "control", "sample_id": [ "GSM313577", "GSM313578", "GSM313579", "GSM313580", "GSM313581", "GSM313582" ], "type": "agent", "id": "GDS3515_1" }, { "dataset_id": "GDS3515", "description": "htt-171-82Q", "sample_id": [ "GSM313583", "GSM313584", "GSM313585", "GSM313586", "GSM313587", "GSM313588" ], "type": "agent", "id": "GDS3515_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3515", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3515.tab", "compression": "gz" } ], [ [ "GDS3516.tab" ], { "title": "Nodular lymphocyte-predominant Hodgkin lymphoma: lymphocytic and histiocytic cells", "description": "Analysis of neoplastic lymphocytic and histiocytic cells (L&H) dissected from nodular lymphocyte-predominant Hodgkin lymphoma tumors (NLPHL). L&H cells represent less than 1 percent of cells in NLPHL tumors. Results provide insight into the pathogenesis of NLPHL.", "type": "Expression profiling by array", "pubmed_id": [ "18794340", "24376854" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "67", "value_type": "count", "reference_series": "GSE12453", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS3516", "description": "classical Hodgkin lymphoma", "sample_id": [ "GSM312811", "GSM312812", "GSM312813", "GSM312814", "GSM312815", "GSM312816", "GSM312817", "GSM312818", "GSM312819", "GSM312820", "GSM312821", "GSM312822" ], "type": "disease state", "id": "GDS3516_1" }, { "dataset_id": "GDS3516", "description": "nodular lymphocyte-predominant Hodgkin lymphoma", "sample_id": [ "GSM312823", "GSM312824", "GSM312825", "GSM312826", "GSM312839" ], "type": "disease state", "id": "GDS3516_2" }, { "dataset_id": "GDS3516", "description": "T-cell rich B-cell lymphoma", "sample_id": [ "GSM312840", "GSM312841", "GSM312843", "GSM312844" ], "type": "disease state", "id": "GDS3516_3" }, { "dataset_id": "GDS3516", "description": "follicular lymphoma", "sample_id": [ "GSM312845", "GSM312846", "GSM312847", "GSM312848", "GSM312849" ], "type": "disease state", "id": "GDS3516_4" }, { "dataset_id": "GDS3516", "description": "Burkitt lymphoma", "sample_id": [ "GSM312851", "GSM312853", "GSM312854", "GSM312856", "GSM312857" ], "type": "disease state", "id": "GDS3516_5" }, { "dataset_id": "GDS3516", "description": "diffuse large B-cell lymphoma", "sample_id": [ "GSM312858", "GSM312859", "GSM312860", "GSM312861", "GSM312862", "GSM312863", "GSM312864", "GSM312865", "GSM312867", "GSM312868", "GSM312869" ], "type": "disease state", "id": "GDS3516_6" }, { "dataset_id": "GDS3516", "description": "normal naive B-cells", "sample_id": [ "GSM312870", "GSM312872", "GSM312874", "GSM312875", "GSM312876" ], "type": "disease state", "id": "GDS3516_7" }, { "dataset_id": "GDS3516", "description": "normal memory B-cells", "sample_id": [ "GSM312877", "GSM312879", "GSM312882", "GSM312883", "GSM312886" ], "type": "disease state", "id": "GDS3516_8" }, { "dataset_id": "GDS3516", "description": "normal centrocytes", "sample_id": [ "GSM312887", "GSM312890", "GSM312893", "GSM312894", "GSM312895" ], "type": "disease state", "id": "GDS3516_9" }, { "dataset_id": "GDS3516", "description": "normal centroblasts", "sample_id": [ "GSM312937", "GSM312938", "GSM312939", "GSM312940", "GSM312941" ], "type": "disease state", "id": "GDS3516_10" }, { "dataset_id": "GDS3516", "description": "normal plasma cells", "sample_id": [ "GSM312942", "GSM312943", "GSM312944", "GSM312945", "GSM312946" ], "type": "disease state", "id": "GDS3516_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3516", "version": 1.0, "instances": "67", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3516.tab", "compression": "gz" } ], [ [ "GDS3517.tab" ], { "title": "Oncogenic NRAS depletion effect on melanoma cell lines: time course", "description": "Analysis of melanoma 224 and BL cells for up to 3 days after suppression of the mutant NRAS Q61R gene with siRNA siMut10 or siMut12. Activating mutations in NRAS gene is a common genetic event in malignant melanoma. Results provide insight into the role of NRAS in the pathogenesis of melanoma.", "type": "Expression profiling by array", "pubmed_id": "18814281", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "count", "reference_series": "GSE12445", "order": "none", "update_date": "Jan 06 2009", "subsets": [ { "dataset_id": "GDS3517", "description": "224", "sample_id": [ "GSM312684", "GSM312685", "GSM312686", "GSM312687", "GSM312688", "GSM312689", "GSM312690", "GSM312691", "GSM312692", "GSM312693", "GSM312694", "GSM312695", "GSM312696", "GSM312697", "GSM312698", "GSM312699", "GSM312700", "GSM312701", "GSM312702", "GSM312703", "GSM312704", "GSM312705", "GSM312706", "GSM312707" ], "type": "cell line", "id": "GDS3517_1" }, { "dataset_id": "GDS3517", "description": "BL", "sample_id": [ "GSM312708", "GSM312709", "GSM312710", "GSM312711", "GSM312712", "GSM312713", "GSM312714", "GSM312715", "GSM312716", "GSM312717", "GSM312718", "GSM312719", "GSM312720", "GSM312721", "GSM312722", "GSM312723", "GSM312724", "GSM312725", "GSM312726", "GSM312727", "GSM312728", "GSM312729", "GSM312730", "GSM312731", "GSM312732", "GSM312733", "GSM312734" ], "type": "cell line", "id": "GDS3517_2" }, { "dataset_id": "GDS3517", "description": "none", "sample_id": [ "GSM312684", "GSM312685", "GSM312686", "GSM312708", "GSM312709", "GSM312710" ], "type": "agent", "id": "GDS3517_3" }, { "dataset_id": "GDS3517", "description": "control siRNA", "sample_id": [ "GSM312693", "GSM312694", "GSM312695", "GSM312699", "GSM312700", "GSM312701", "GSM312705", "GSM312706", "GSM312707", "GSM312719", "GSM312720", "GSM312721", "GSM312722", "GSM312731", "GSM312732", "GSM312733", "GSM312734" ], "type": "agent", "id": "GDS3517_4" }, { "dataset_id": "GDS3517", "description": "siMut10", "sample_id": [ "GSM312687", "GSM312688", "GSM312689", "GSM312696", "GSM312697", "GSM312698", "GSM312702", "GSM312703", "GSM312704", "GSM312711", "GSM312712", "GSM312713", "GSM312714", "GSM312723", "GSM312724", "GSM312725", "GSM312726" ], "type": "agent", "id": "GDS3517_5" }, { "dataset_id": "GDS3517", "description": "siMut12", "sample_id": [ "GSM312690", "GSM312691", "GSM312692", "GSM312715", "GSM312716", "GSM312717", "GSM312718", "GSM312727", "GSM312728", "GSM312729", "GSM312730" ], "type": "agent", "id": "GDS3517_6" }, { "dataset_id": "GDS3517", "description": "0 d", "sample_id": [ "GSM312684", "GSM312685", "GSM312686", "GSM312708", "GSM312709", "GSM312710" ], "type": "time", "id": "GDS3517_7" }, { "dataset_id": "GDS3517", "description": "1 d", "sample_id": [ "GSM312687", "GSM312688", "GSM312689", "GSM312690", "GSM312691", "GSM312692", "GSM312693", "GSM312694", "GSM312695", "GSM312711", "GSM312712", "GSM312713", "GSM312714", "GSM312715", "GSM312716", "GSM312717", "GSM312718", "GSM312719", "GSM312720", "GSM312721", "GSM312722" ], "type": "time", "id": "GDS3517_8" }, { "dataset_id": "GDS3517", "description": "2 d", "sample_id": [ "GSM312696", "GSM312697", "GSM312698", "GSM312699", "GSM312700", "GSM312701", "GSM312723", "GSM312724", "GSM312725", "GSM312726", "GSM312727", "GSM312728", "GSM312729", "GSM312730", "GSM312731", "GSM312732", "GSM312733", "GSM312734" ], "type": "time", "id": "GDS3517_9" }, { "dataset_id": "GDS3517", "description": "3 d", "sample_id": [ "GSM312702", "GSM312703", "GSM312704", "GSM312705", "GSM312706", "GSM312707" ], "type": "time", "id": "GDS3517_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3517", "version": 1.0, "instances": "51", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3517.tab", "compression": "gz" } ], [ [ "GDS3518.tab" ], { "title": "Chronic myelogenous leukemia response to imatinib: Philadelphia chromosome positive CD34+ cells", "description": "Analysis of Philadelphia chromosome-positive CD34+ cells of chronic myelogenous leukemia patients treated with imatinib. The anti-cancer drug imatinib is a selective bcr-abl tyrosine kinase inhibitor. Results provide insight into the molecular events affected by bcr-abl inhibition through imatinib.", "type": "Expression profiling by array", "pubmed_id": "19052557", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12211", "order": "none", "update_date": "Jan 06 2009", "subsets": [ { "dataset_id": "GDS3518", "description": "imatinib", "sample_id": [ "GSM307028", "GSM307030", "GSM307031", "GSM307032", "GSM307053", "GSM307072" ], "type": "agent", "id": "GDS3518_1" }, { "dataset_id": "GDS3518", "description": "control", "sample_id": [ "GSM307000", "GSM307012", "GSM307013", "GSM307018", "GSM307020", "GSM307023" ], "type": "agent", "id": "GDS3518_2" }, { "dataset_id": "GDS3518", "description": "patient 1", "sample_id": [ "GSM307000", "GSM307028" ], "type": "individual", "id": "GDS3518_3" }, { "dataset_id": "GDS3518", "description": "patient 2", "sample_id": [ "GSM307012", "GSM307030" ], "type": "individual", "id": "GDS3518_4" }, { "dataset_id": "GDS3518", "description": "patient 3", "sample_id": [ "GSM307013", "GSM307031" ], "type": "individual", "id": "GDS3518_5" }, { "dataset_id": "GDS3518", "description": "patient 4", "sample_id": [ "GSM307018", "GSM307032" ], "type": "individual", "id": "GDS3518_6" }, { "dataset_id": "GDS3518", "description": "patient 5", "sample_id": [ "GSM307020", "GSM307053" ], "type": "individual", "id": "GDS3518_7" }, { "dataset_id": "GDS3518", "description": "patient 6", "sample_id": [ "GSM307023", "GSM307072" ], "type": "individual", "id": "GDS3518_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3518", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3518.tab", "compression": "gz" } ], [ [ "GDS3519.tab" ], { "title": "Plasmacytoid dendritic cell response to transcription factor E2-2", "description": "Analysis of plasmocytoid dendritic cells (PDCs) heterozygous null for the transcription factor E2-2. Deletion of E2-2 blocked the development of PDCs but not of other lineages. Results provide insight into the role of E2-2 in the specification of the PDC lineage.", "type": "Expression profiling by array", "pubmed_id": "18854153", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE12505", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3519", "description": "wild type", "sample_id": [ "GSM314209", "GSM314210" ], "type": "genotype/variation", "id": "GDS3519_1" }, { "dataset_id": "GDS3519", "description": "heterozygous E2-2 null", "sample_id": [ "GSM314211", "GSM314212" ], "type": "genotype/variation", "id": "GDS3519_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3519", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3519.tab", "compression": "gz" } ], [ [ "GDS352.tab" ], { "title": "Dendritic cell subtypes", "description": "Profiling of murine splenic CD11c high dendritic cell subtypes. CD4+, CD8+ and CD8- CD4- cells analyzed both directly after sorting and after 2 hours cultivation.", "type": "Expression profiling by array", "pubmed_id": "12816982", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE339", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS352", "description": "not cultured", "sample_id": [ "GSM4697", "GSM4707", "GSM4708", "GSM4709", "GSM4710", "GSM4711" ], "type": "protocol", "id": "GDS352_1" }, { "dataset_id": "GDS352", "description": "cultured", "sample_id": [ "GSM4757", "GSM4758", "GSM4772", "GSM4773", "GSM4774", "GSM4775" ], "type": "protocol", "id": "GDS352_2" }, { "dataset_id": "GDS352", "description": "CD4+", "sample_id": [ "GSM4697", "GSM4707", "GSM4757", "GSM4758" ], "type": "cell type", "id": "GDS352_3" }, { "dataset_id": "GDS352", "description": "CD8+", "sample_id": [ "GSM4708", "GSM4709", "GSM4772", "GSM4773" ], "type": "cell type", "id": "GDS352_4" }, { "dataset_id": "GDS352", "description": "CD4- CD8-", "sample_id": [ "GSM4710", "GSM4711", "GSM4774", "GSM4775" ], "type": "cell type", "id": "GDS352_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS352", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS352.tab", "compression": "gz" } ], [ [ "GDS3520.tab" ], { "title": "Resident liver stem cell lines", "description": "Analysis of the resident liver stem cell (RLSCs) lines MetE14/3 and WTE14/1. Results provide insight into the molecular phenotype of RLSCs.", "type": "Expression profiling by array", "pubmed_id": "17932501", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE7038", "order": "none", "update_date": "Jan 06 2009", "subsets": [ { "dataset_id": "GDS3520", "description": "resident liver stem cell", "sample_id": [ "GSM162863", "GSM216535" ], "type": "cell type", "id": "GDS3520_1" }, { "dataset_id": "GDS3520", "description": "differentiated liver cell", "sample_id": [ "GSM162807", "GSM216536" ], "type": "cell type", "id": "GDS3520_2" }, { "dataset_id": "GDS3520", "description": "MMH-D3", "sample_id": [ "GSM162807", "GSM216536" ], "type": "cell line", "id": "GDS3520_3" }, { "dataset_id": "GDS3520", "description": "WTE14/1", "sample_id": [ "GSM162863" ], "type": "cell line", "id": "GDS3520_4" }, { "dataset_id": "GDS3520", "description": "MetE14/3", "sample_id": [ "GSM216535" ], "type": "cell line", "id": "GDS3520_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3520", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3520.tab", "compression": "gz" } ], [ [ "GDS3521.tab" ], { "title": "Retina response to hypoxia and subsequent reoxygenation: time course", "description": "Analysis of retinas subjected to hypoxia for 6 hours and subsequent reoxygenation for up to 16 hours. Hypoxic preconditioning protects photoreceptors from light damage in animal model. Results provide insight into the molecular basis of this protective effect.", "type": "Expression profiling by array", "pubmed_id": "18261226", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE14366", "order": "none", "update_date": "Jan 14 2009", "subsets": [ { "dataset_id": "GDS3521", "description": "hypoxic preconditioning", "sample_id": [ "GSM359254", "GSM359255", "GSM359256", "GSM359260", "GSM359261", "GSM359262", "GSM359266", "GSM359267", "GSM359268", "GSM359272", "GSM359273", "GSM359274" ], "type": "protocol", "id": "GDS3521_1" }, { "dataset_id": "GDS3521", "description": "control", "sample_id": [ "GSM359257", "GSM359258", "GSM359259", "GSM359263", "GSM359264", "GSM359265", "GSM359269", "GSM359270", "GSM359271", "GSM359275", "GSM359276", "GSM359277" ], "type": "protocol", "id": "GDS3521_2" }, { "dataset_id": "GDS3521", "description": "0 h", "sample_id": [ "GSM359254", "GSM359255", "GSM359256", "GSM359257", "GSM359258", "GSM359259" ], "type": "time", "id": "GDS3521_3" }, { "dataset_id": "GDS3521", "description": "2 h", "sample_id": [ "GSM359260", "GSM359261", "GSM359262", "GSM359263", "GSM359264", "GSM359265" ], "type": "time", "id": "GDS3521_4" }, { "dataset_id": "GDS3521", "description": "4 h", "sample_id": [ "GSM359266", "GSM359267", "GSM359268", "GSM359269", "GSM359270", "GSM359271" ], "type": "time", "id": "GDS3521_5" }, { "dataset_id": "GDS3521", "description": "16 h", "sample_id": [ "GSM359272", "GSM359273", "GSM359274", "GSM359275", "GSM359276", "GSM359277" ], "type": "time", "id": "GDS3521_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3521", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3521.tab", "compression": "gz" } ], [ [ "GDS3522.tab" ], { "title": "Lung response to aerosolized non-typeable Haemophilus influenza lysate: time course", "description": "Analysis of lungs exposed to aerosolized non-typeable Haemophilus influenza (NTHi) lysate for 2 or 4 hours. Aerosolized NTHi treatment induces lung inflammation but protects against fatal bacterial pneumonia in animal models. Results provide insight into molecular basis of NTHi's protective effect.", "type": "Expression profiling by array", "pubmed_id": "19137067", "platform": "GPL6105", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46632", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE13740", "order": "none", "update_date": "Jan 14 2009", "subsets": [ { "dataset_id": "GDS3522", "description": "control", "sample_id": [ "GSM345353", "GSM345354", "GSM345355", "GSM345356", "GSM345357", "GSM345358" ], "type": "agent", "id": "GDS3522_1" }, { "dataset_id": "GDS3522", "description": "NTHi", "sample_id": [ "GSM345359", "GSM345360", "GSM345361", "GSM345362", "GSM345363", "GSM345364", "GSM345365", "GSM345366", "GSM345367", "GSM345368", "GSM345369", "GSM345370" ], "type": "agent", "id": "GDS3522_2" }, { "dataset_id": "GDS3522", "description": "2 h", "sample_id": [ "GSM345353", "GSM345354", "GSM345355", "GSM345356", "GSM345357", "GSM345358", "GSM345359", "GSM345360", "GSM345361", "GSM345362", "GSM345363", "GSM345364" ], "type": "time", "id": "GDS3522_3" }, { "dataset_id": "GDS3522", "description": "4 h", "sample_id": [ "GSM345365", "GSM345366", "GSM345367", "GSM345368", "GSM345369", "GSM345370" ], "type": "time", "id": "GDS3522_4" } ], "taxid": "10090", "genes": 33575, "aggregation_function": "mean", "name": "GDS3522", "version": 1.0, "instances": "18", "variables": 33578, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3522.tab", "compression": "gz" } ], [ [ "GDS3523.tab" ], { "title": "Non-migratory villous cytotrophoblasts and invasive extra-villous trophoblasts", "description": "Comparison of non-migratory villous cytotrophoblasts (CTBs) and invasive extra-villous trophoblasts. Invasion of CTBs into uterine tissues is essential for placental development. Results provide insight into the molecular mechanisms regulating trophoblast invasion.", "type": "Expression profiling by array", "pubmed_id": "18845641", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE9773", "order": "none", "update_date": "Mar 13 2009", "subsets": [ { "dataset_id": "GDS3523", "description": "extravillous trophoblast cell", "sample_id": [ "GSM246492", "GSM246493", "GSM246494", "GSM307639", "GSM307640", "GSM307641" ], "type": "cell type", "id": "GDS3523_1" }, { "dataset_id": "GDS3523", "description": "cytotrophoblast cell", "sample_id": [ "GSM246495", "GSM246497", "GSM246499", "GSM307642", "GSM307643" ], "type": "cell type", "id": "GDS3523_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3523", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3523.tab", "compression": "gz" } ], [ [ "GDS3524.tab" ], { "title": "Hypoxia effect on a renal proximal tubule epithelial cell line", "description": "Analysis of cultured renal proximal tubule epithelial RPTEC cells subjected to hypoxia at 1% oxygen for 24 hours. Results identify hypoxia-controlled genes in epithelial cells.", "type": "Expression profiling by array", "pubmed_id": "18984585", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE12792", "order": "none", "update_date": "Mar 13 2009", "subsets": [ { "dataset_id": "GDS3524", "description": "normoxia", "sample_id": [ "GSM320836", "GSM320853", "GSM320854" ], "type": "stress", "id": "GDS3524_1" }, { "dataset_id": "GDS3524", "description": "hypoxia", "sample_id": [ "GSM320855", "GSM320856", "GSM320857" ], "type": "stress", "id": "GDS3524_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3524", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3524.tab", "compression": "gz" } ], [ [ "GDS3525.tab" ], { "title": "Ovarian cancer and depression", "description": "Analysis of primary ovarian tumors from patients with high depressive symptoms. Results provide insight into the contribution of biobehavioral factors such as such as stress, depression, and social support to the molecular progression of cancer.", "type": "Expression profiling by array", "pubmed_id": [ "18550328", "20176930" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE9116", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3525", "description": "low depression", "sample_id": [ "GSM230885", "GSM230886", "GSM230887", "GSM230888", "GSM230889" ], "type": "individual", "id": "GDS3525_1" }, { "dataset_id": "GDS3525", "description": "high depression", "sample_id": [ "GSM230890", "GSM230891", "GSM230892", "GSM230893", "GSM230894" ], "type": "individual", "id": "GDS3525_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3525", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3525.tab", "compression": "gz" } ], [ [ "GDS3526.tab" ], { "title": "Skeletal muscle response to myostatin inhibition", "description": "Analysis of skeletal muscles of 4 to 5 month old males treated with an anti-myostatin antibody to inhibit myostatin activity. Myostatin null mutations lead to hypermuscularity. Results provide insight into the molecular effect of the post-developmental loss of myostatin activity on skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "19141683", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE13707", "order": "none", "update_date": "Feb 05 2009", "subsets": [ { "dataset_id": "GDS3526", "description": "control", "sample_id": [ "GSM344631", "GSM344632", "GSM344633", "GSM344634", "GSM344635", "GSM344636", "GSM344637", "GSM344638", "GSM344639", "GSM344640" ], "type": "protocol", "id": "GDS3526_1" }, { "dataset_id": "GDS3526", "description": "myostatin inhibition", "sample_id": [ "GSM344641", "GSM344642", "GSM344643", "GSM344644", "GSM344645", "GSM344646", "GSM344647", "GSM344648", "GSM344649", "GSM344650" ], "type": "protocol", "id": "GDS3526_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3526", "version": 1.0, "instances": "20", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3526.tab", "compression": "gz" } ], [ [ "GDS3527.tab" ], { "title": "KRAP deficiency effect on brown adipose tissues", "description": "Analysis of brown adipose tissues from animals lacking KRAP. KRAP null mutants exhibit increased metabolic rate, reduced adiposity, improved glucose tolerance, hypoinsulinemia, and hypoleptinemia. Results provide insight into the molecular basis of the metabolic phenotype of KRAP deficient animals.", "type": "Expression profiling by array", "pubmed_id": "19156225", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE13585", "order": "none", "update_date": "Feb 09 2009", "subsets": [ { "dataset_id": "GDS3527", "description": "control", "sample_id": [ "GSM341694", "GSM341695", "GSM341696" ], "type": "genotype/variation", "id": "GDS3527_1" }, { "dataset_id": "GDS3527", "description": "KRAP null", "sample_id": [ "GSM341691", "GSM341692", "GSM341693" ], "type": "genotype/variation", "id": "GDS3527_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3527", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3527.tab", "compression": "gz" } ], [ [ "GDS3528.tab" ], { "title": "KRAP deficiency effect on the liver", "description": "Analysis of livers from animals lacking KRAP. KRAP null mutants exhibit increased metabolic rate, reduced adiposity, improved glucose tolerance, hypoinsulinemia, and hypoleptinemia. Results provide insight into the molecular basis of the metabolic phenotype of KRAP deficient animals.", "type": "Expression profiling by array", "pubmed_id": "19156225", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE13585", "order": "none", "update_date": "Feb 05 2009", "subsets": [ { "dataset_id": "GDS3528", "description": "control", "sample_id": [ "GSM341700", "GSM341701", "GSM341702" ], "type": "genotype/variation", "id": "GDS3528_1" }, { "dataset_id": "GDS3528", "description": "KRAP null", "sample_id": [ "GSM341697", "GSM341698", "GSM341699" ], "type": "genotype/variation", "id": "GDS3528_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3528", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3528.tab", "compression": "gz" } ], [ [ "GDS3529.tab" ], { "title": "Pancreatic islet response to glucose in vitro: dose response", "description": "Analysis of pancreatic islets cultured for 18 hours in 2, 5, 10, or 30 mM glucose. Culture in 2 to 10 mM glucose improves beta cell survival and function, while concentrations above 10 mM are deleterious. Results provide insight into the molecular basis of this sensitivity to glucose concentrations.", "type": "Expression profiling by array", "pubmed_id": "19165461", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE12817", "order": "none", "update_date": "Feb 05 2009", "subsets": [ { "dataset_id": "GDS3529", "description": "2 mM", "sample_id": [ "GSM322006", "GSM322007", "GSM322008", "GSM322009" ], "type": "dose", "id": "GDS3529_1" }, { "dataset_id": "GDS3529", "description": "5 mM", "sample_id": [ "GSM322010", "GSM322011", "GSM322012", "GSM322013" ], "type": "dose", "id": "GDS3529_2" }, { "dataset_id": "GDS3529", "description": "10 mM", "sample_id": [ "GSM322014", "GSM322015", "GSM322016", "GSM322017" ], "type": "dose", "id": "GDS3529_3" }, { "dataset_id": "GDS3529", "description": "30 mM", "sample_id": [ "GSM322018", "GSM322019", "GSM322020", "GSM322021" ], "type": "dose", "id": "GDS3529_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3529", "version": 1.0, "instances": "16", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3529.tab", "compression": "gz" } ], [ [ "GDS353.tab" ], { "title": "Dermal burn wounds", "description": "Investigation into dermal burn wound healing. Thermal dermal injury induced. Skin excised at 0 hours, 2 hours, 3 days and 14 days post-injury.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE460", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS353", "description": "0 hours", "sample_id": [ "GSM7478", "GSM7479", "GSM7480" ], "type": "time", "id": "GDS353_1" }, { "dataset_id": "GDS353", "description": "2 hours", "sample_id": [ "GSM7481", "GSM7482", "GSM7483" ], "type": "time", "id": "GDS353_2" }, { "dataset_id": "GDS353", "description": "3 days", "sample_id": [ "GSM7484", "GSM7485", "GSM7486" ], "type": "time", "id": "GDS353_3" }, { "dataset_id": "GDS353", "description": "14 days", "sample_id": [ "GSM7487", "GSM7488", "GSM7489" ], "type": "time", "id": "GDS353_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS353", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS353.tab", "compression": "gz" } ], [ [ "GDS3530.tab" ], { "title": "Human Papillomavirus type 16 E6 transgenic model (K14E6): cervical and skin tissues", "description": "Analysis of cervix and skin from 6 week-old, virgin, transgenic females expressing HPV16 E6 oncoprotein. K14E6 transgenics present a more aggressive phenotype in the skin than in the cervix. Results provide insight into the molecular basis for this observed difference in E6 effect.", "type": "Expression profiling by array", "pubmed_id": "19036130", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE10702", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3530", "description": "cervix", "sample_id": [ "GSM270595", "GSM270597", "GSM270598", "GSM270599" ], "type": "tissue", "id": "GDS3530_1" }, { "dataset_id": "GDS3530", "description": "skin", "sample_id": [ "GSM270600", "GSM270601", "GSM270602", "GSM270603" ], "type": "tissue", "id": "GDS3530_2" }, { "dataset_id": "GDS3530", "description": "K14E6 transgenic", "sample_id": [ "GSM270595", "GSM270597", "GSM270600", "GSM270601" ], "type": "genotype/variation", "id": "GDS3530_3" }, { "dataset_id": "GDS3530", "description": "FVB non-transgenic", "sample_id": [ "GSM270598", "GSM270599", "GSM270602", "GSM270603" ], "type": "genotype/variation", "id": "GDS3530_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3530", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3530.tab", "compression": "gz" } ], [ [ "GDS3531.tab" ], { "title": "PGC-1-related coactivator partial depletion", "description": "Analysis of U2OS cells partially depleted for the PGC-1-related coactivator PRC. Loss of PRC results in a severe reduction in respiratory energy production, the proliferation of structurally defective mitochondria, and a defect in cell cycle progression.", "type": "Expression profiling by array", "pubmed_id": "19036724", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE14428", "order": "none", "update_date": "Feb 09 2009", "subsets": [ { "dataset_id": "GDS3531", "description": "control", "sample_id": [ "GSM347892", "GSM347893", "GSM347894" ], "type": "protocol", "id": "GDS3531_1" }, { "dataset_id": "GDS3531", "description": "PRC depletion", "sample_id": [ "GSM347895", "GSM347896", "GSM347897" ], "type": "protocol", "id": "GDS3531_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3531", "version": 1.0, "instances": "6", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3531.tab", "compression": "gz" } ], [ [ "GDS3532.tab" ], { "title": "PGC-1-related coactivator depletion", "description": "Analysis of U2OS cells nearly completely depleted for the PGC-1-related coactivator PRC. Loss of PRC results in a severe reduction in respiratory energy production, the proliferation of structurally defective mitochondria, and a defect in cell cycle progression.", "type": "Expression profiling by array", "pubmed_id": "19036724", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE14428", "order": "none", "update_date": "Feb 09 2009", "subsets": [ { "dataset_id": "GDS3532", "description": "control", "sample_id": [ "GSM347904", "GSM347905", "GSM347906" ], "type": "protocol", "id": "GDS3532_1" }, { "dataset_id": "GDS3532", "description": "PRC depletion", "sample_id": [ "GSM347907", "GSM347908", "GSM347909" ], "type": "protocol", "id": "GDS3532_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3532", "version": 1.0, "instances": "6", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3532.tab", "compression": "gz" } ], [ [ "GDS3533.tab" ], { "title": "Caveolin-3 deficiency effect on virgin mammary glands", "description": "Analysis of caveolin-3 (Cav-3) deficient mammary glands from virgin females. Cav-3 deficient virgin mammary glands develop lobulo-alveolar hyperplasia, akin to the changes normally observed during pregnancy and lactation. Results provide insight into the molecular basis of this Cav-3 null phenotype.", "type": "Expression profiling by array", "pubmed_id": "19164602", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE12881", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3533", "description": "wild type", "sample_id": [ "GSM322703", "GSM322717", "GSM322718" ], "type": "genotype/variation", "id": "GDS3533_1" }, { "dataset_id": "GDS3533", "description": "Cav-3 null", "sample_id": [ "GSM322719", "GSM322721", "GSM322722" ], "type": "genotype/variation", "id": "GDS3533_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3533", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3533.tab", "compression": "gz" } ], [ [ "GDS3534.tab" ], { "title": "Lymphatic endothelial cell response to Prox1 and NR2F2 depletion", "description": "Analysis of lymphatic endothelial cells (LECs) depleted for Prox1, NR2F2, or both regulators. LECs are derived from venous endothelial cells (VECs). Prox1 and NR2F2 regulate LEC and VEC development, respectively. Results provide insight into the role of NR2F2 and Prox1 in maintaining LEC phenotypes.", "type": "Expression profiling by array", "pubmed_id": "18815287", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE12846", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3534", "description": "control", "sample_id": [ "GSM322415" ], "type": "protocol", "id": "GDS3534_1" }, { "dataset_id": "GDS3534", "description": "Prox1 depletion", "sample_id": [ "GSM322416" ], "type": "protocol", "id": "GDS3534_2" }, { "dataset_id": "GDS3534", "description": "NR2F2 depletion", "sample_id": [ "GSM322417" ], "type": "protocol", "id": "GDS3534_3" }, { "dataset_id": "GDS3534", "description": "Prox1 and NR2F2 depletion", "sample_id": [ "GSM322418" ], "type": "protocol", "id": "GDS3534_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3534", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3534.tab", "compression": "gz" } ], [ [ "GDS3535.tab" ], { "title": "Greening after extended darkness 1 (ged1) mutant seedlings", "description": "Analysis of ged1 mutant seedlings grown for 5 days in the dark followed by 2 days in the light. The ged1 mutant showed an enhanced ability to green on illumination after prolonged darkness. Results provide insight into the molecular basis of the enhanced greening ability of ged1 seedlings.", "type": "Expression profiling by array", "pubmed_id": "18931353", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12401", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3535", "description": "wildtype", "sample_id": [ "GSM311266", "GSM311267", "GSM311268" ], "type": "genotype/variation", "id": "GDS3535_1" }, { "dataset_id": "GDS3535", "description": "ged1 mutant", "sample_id": [ "GSM311269", "GSM311270", "GSM311271" ], "type": "genotype/variation", "id": "GDS3535_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3535", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3535.tab", "compression": "gz" } ], [ [ "GDS3536.tab" ], { "title": "Seizure model: brain", "description": "Analysis of brains of nicotine-induced seizure-sensitive (alpha7 +/T) and -resistant (beta4 -/-) nicotinic acetylcholine receptor (nAChR) mutants following nicotine treatment. Results provide insight into the molecular mechanisms underlying seizures.", "type": "Expression profiling by array", "pubmed_id": "17456735", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE6614", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3536", "description": "wild type", "sample_id": [ "GSM153512", "GSM153526", "GSM153527", "GSM153528", "GSM153532", "GSM153533", "GSM153534", "GSM153535", "GSM153536" ], "type": "genotype/variation", "id": "GDS3536_1" }, { "dataset_id": "GDS3536", "description": "alpha-7 +/T", "sample_id": [ "GSM153537", "GSM153538", "GSM153539", "GSM153560", "GSM153561", "GSM153562", "GSM153563", "GSM153564", "GSM153565", "GSM153566" ], "type": "genotype/variation", "id": "GDS3536_2" }, { "dataset_id": "GDS3536", "description": "beta-4 -/-", "sample_id": [ "GSM153567", "GSM153568", "GSM153569", "GSM153570", "GSM153571", "GSM153572", "GSM153573", "GSM153574", "GSM153575" ], "type": "genotype/variation", "id": "GDS3536_3" }, { "dataset_id": "GDS3536", "description": "nicotine", "sample_id": [ "GSM153534", "GSM153535", "GSM153536", "GSM153562", "GSM153563", "GSM153564", "GSM153565", "GSM153566", "GSM153572", "GSM153573", "GSM153574", "GSM153575" ], "type": "agent", "id": "GDS3536_4" }, { "dataset_id": "GDS3536", "description": "untreated", "sample_id": [ "GSM153512", "GSM153526", "GSM153527", "GSM153528", "GSM153532", "GSM153533", "GSM153537", "GSM153538", "GSM153539", "GSM153560", "GSM153561", "GSM153567", "GSM153568", "GSM153569", "GSM153570", "GSM153571" ], "type": "agent", "id": "GDS3536_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3536", "version": 1.0, "instances": "28", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3536.tab", "compression": "gz" } ], [ [ "GDS3537.tab" ], { "title": "Polybrominated diphenyl ethers effect on adrenocortical carcinoma cell line", "description": "Analysis of H295R adrenocortical carcinoma cells treated with the hydroxylated polybrominated biphenyl ether (PBDE) 2-OH-BDE47 or 2-OH-BDE85. PBDEs are used as flame retardants in various products. The two PBDEs are cytotoxic. Results provide insight into the molecular basis of PBDE cytotoxicity.", "type": "Expression profiling by array", "pubmed_id": "19095052", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE8588", "order": "none", "update_date": "Mar 30 2009", "subsets": [ { "dataset_id": "GDS3537", "description": "DMSO", "sample_id": [ "GSM213193", "GSM213194", "GSM213197" ], "type": "agent", "id": "GDS3537_1" }, { "dataset_id": "GDS3537", "description": "2-OH-BDE47", "sample_id": [ "GSM213199", "GSM213200", "GSM213201" ], "type": "agent", "id": "GDS3537_2" }, { "dataset_id": "GDS3537", "description": "2-OH-BDE85", "sample_id": [ "GSM213204", "GSM213205", "GSM213210" ], "type": "agent", "id": "GDS3537_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3537", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3537.tab", "compression": "gz" } ], [ [ "GDS3539.tab" ], { "title": "Psoriasis", "description": "Analysis of lesional and non-lesional skins from patients with psoriasis. Psoriasis is an immune-mediated disease characterized by aberrant epidermal differentiation, surface scale formation, and marked cutaneous inflammation. Results provide insight into the molecular pathogenesis of psoriasis.", "type": "Expression profiling by array", "pubmed_id": "18648529", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "82", "value_type": "transformed count", "reference_series": "GSE14905", "order": "none", "update_date": "Feb 24 2009", "subsets": [ { "dataset_id": "GDS3539", "description": "control", "sample_id": [ "GSM372286", "GSM372287", "GSM372288", "GSM372289", "GSM372290", "GSM372291", "GSM372292", "GSM372293", "GSM372294", "GSM372295", "GSM372296", "GSM372297", "GSM372298", "GSM372299", "GSM372300", "GSM372301", "GSM372302", "GSM372303", "GSM372304", "GSM372305", "GSM372306" ], "type": "disease state", "id": "GDS3539_1" }, { "dataset_id": "GDS3539", "description": "psoriasis", "sample_id": [ "GSM372307", "GSM372308", "GSM372309", "GSM372310", "GSM372311", "GSM372312", "GSM372313", "GSM372314", "GSM372315", "GSM372316", "GSM372317", "GSM372318", "GSM372319", "GSM372320", "GSM372321", "GSM372322", "GSM372323", "GSM372324", "GSM372325", "GSM372326", "GSM372327", "GSM372328", "GSM372329", "GSM372330", "GSM372331", "GSM372332", "GSM372333", "GSM372334", "GSM372335", "GSM372336", "GSM372337", "GSM372338", "GSM372339", "GSM372340", "GSM372341", "GSM372342", "GSM372343", "GSM372344", "GSM372345", "GSM372346", "GSM372347", "GSM372348", "GSM372349", "GSM372350", "GSM372351", "GSM372352", "GSM372353", "GSM372354", "GSM372355", "GSM372356", "GSM372357", "GSM372358", "GSM372359", "GSM372360", "GSM372361", "GSM372362", "GSM372363", "GSM372364", "GSM372365", "GSM372366", "GSM372367" ], "type": "disease state", "id": "GDS3539_2" }, { "dataset_id": "GDS3539", "description": "normal", "sample_id": [ "GSM372286", "GSM372287", "GSM372288", "GSM372289", "GSM372290", "GSM372291", "GSM372292", "GSM372293", "GSM372294", "GSM372295", "GSM372296", "GSM372297", "GSM372298", "GSM372299", "GSM372300", "GSM372301", "GSM372302", "GSM372303", "GSM372304", "GSM372305", "GSM372306" ], "type": "specimen", "id": "GDS3539_3" }, { "dataset_id": "GDS3539", "description": "non-lesional", "sample_id": [ "GSM372307", "GSM372309", "GSM372311", "GSM372313", "GSM372315", "GSM372317", "GSM372319", "GSM372321", "GSM372323", "GSM372326", "GSM372328", "GSM372330", "GSM372332", "GSM372335", "GSM372337", "GSM372339", "GSM372341", "GSM372343", "GSM372345", "GSM372347", "GSM372349", "GSM372351", "GSM372353", "GSM372355", "GSM372357", "GSM372359", "GSM372361", "GSM372363" ], "type": "specimen", "id": "GDS3539_4" }, { "dataset_id": "GDS3539", "description": "lesional", "sample_id": [ "GSM372308", "GSM372310", "GSM372312", "GSM372314", "GSM372316", "GSM372318", "GSM372320", "GSM372322", "GSM372324", "GSM372325", "GSM372327", "GSM372329", "GSM372331", "GSM372333", "GSM372334", "GSM372336", "GSM372338", "GSM372340", "GSM372342", "GSM372344", "GSM372346", "GSM372348", "GSM372350", "GSM372352", "GSM372354", "GSM372356", "GSM372358", "GSM372360", "GSM372362", "GSM372364", "GSM372365", "GSM372366", "GSM372367" ], "type": "specimen", "id": "GDS3539_5" }, { "dataset_id": "GDS3539", "description": "individual 1", "sample_id": [ "GSM372286" ], "type": "individual", "id": "GDS3539_6" }, { "dataset_id": "GDS3539", "description": "individual 2", "sample_id": [ "GSM372287" ], "type": "individual", "id": "GDS3539_7" }, { "dataset_id": "GDS3539", "description": "individual 3", "sample_id": [ "GSM372288" ], "type": "individual", "id": "GDS3539_8" }, { "dataset_id": "GDS3539", "description": "individual 4", "sample_id": [ "GSM372289" ], "type": "individual", "id": "GDS3539_9" }, { "dataset_id": "GDS3539", "description": "individual 5", "sample_id": [ "GSM372290" ], "type": "individual", "id": "GDS3539_10" }, { "dataset_id": "GDS3539", "description": "individual 6", "sample_id": [ "GSM372291" ], "type": "individual", "id": "GDS3539_11" }, { "dataset_id": "GDS3539", "description": "individual 7", "sample_id": [ "GSM372292" ], "type": "individual", "id": "GDS3539_12" }, { "dataset_id": "GDS3539", "description": "individual 8", "sample_id": [ "GSM372293" ], "type": "individual", "id": "GDS3539_13" }, { "dataset_id": "GDS3539", "description": "individual 9", "sample_id": [ "GSM372294" ], "type": "individual", "id": "GDS3539_14" }, { "dataset_id": "GDS3539", "description": "individual 10", "sample_id": [ "GSM372295" ], "type": "individual", "id": "GDS3539_15" }, { "dataset_id": "GDS3539", "description": "individual 11", "sample_id": [ "GSM372296" ], "type": "individual", "id": "GDS3539_16" }, { "dataset_id": "GDS3539", "description": "individual 12", "sample_id": [ "GSM372297" ], "type": "individual", "id": "GDS3539_17" }, { "dataset_id": "GDS3539", "description": "individual 13", "sample_id": [ "GSM372298" ], "type": "individual", "id": "GDS3539_18" }, { "dataset_id": "GDS3539", "description": "individual 14", "sample_id": [ "GSM372299" ], "type": "individual", "id": "GDS3539_19" }, { "dataset_id": "GDS3539", "description": "individual 15", "sample_id": [ "GSM372300" ], "type": "individual", "id": "GDS3539_20" }, { "dataset_id": "GDS3539", "description": "individual 16", "sample_id": [ "GSM372301" ], "type": "individual", "id": "GDS3539_21" }, { "dataset_id": "GDS3539", "description": "individual 17", "sample_id": [ "GSM372302" ], "type": "individual", "id": "GDS3539_22" }, { "dataset_id": "GDS3539", "description": "individual 18", "sample_id": [ "GSM372303" ], "type": "individual", "id": "GDS3539_23" }, { "dataset_id": "GDS3539", "description": "individual 19", "sample_id": [ "GSM372304" ], "type": "individual", "id": "GDS3539_24" }, { "dataset_id": "GDS3539", "description": "individual 20", "sample_id": [ "GSM372305" ], "type": "individual", "id": "GDS3539_25" }, { "dataset_id": "GDS3539", "description": "individual 21", "sample_id": [ "GSM372306" ], "type": "individual", "id": "GDS3539_26" }, { "dataset_id": "GDS3539", "description": "patient 1", "sample_id": [ "GSM372307", "GSM372308" ], "type": "individual", "id": "GDS3539_27" }, { "dataset_id": "GDS3539", "description": "patient 2", "sample_id": [ "GSM372309", "GSM372310" ], "type": "individual", "id": "GDS3539_28" }, { "dataset_id": "GDS3539", "description": "patient 3", "sample_id": [ "GSM372311", "GSM372312" ], "type": "individual", "id": "GDS3539_29" }, { "dataset_id": "GDS3539", "description": "patient 4", "sample_id": [ "GSM372313", "GSM372314" ], "type": "individual", "id": "GDS3539_30" }, { "dataset_id": "GDS3539", "description": "patient 5", "sample_id": [ "GSM372315", "GSM372316" ], "type": "individual", "id": "GDS3539_31" }, { "dataset_id": "GDS3539", "description": "patient 6", "sample_id": [ "GSM372317", "GSM372318" ], "type": "individual", "id": "GDS3539_32" }, { "dataset_id": "GDS3539", "description": "patient 7", "sample_id": [ "GSM372319", "GSM372320" ], "type": "individual", "id": "GDS3539_33" }, { "dataset_id": "GDS3539", "description": "patient 8", "sample_id": [ "GSM372321", "GSM372322" ], "type": "individual", "id": "GDS3539_34" }, { "dataset_id": "GDS3539", "description": "patient 9", "sample_id": [ "GSM372323", "GSM372324" ], "type": "individual", "id": "GDS3539_35" }, { "dataset_id": "GDS3539", "description": "patient 10", "sample_id": [ "GSM372325" ], "type": "individual", "id": "GDS3539_36" }, { "dataset_id": "GDS3539", "description": "patient 11", "sample_id": [ "GSM372326", "GSM372327" ], "type": "individual", "id": "GDS3539_37" }, { "dataset_id": "GDS3539", "description": "patient 12", "sample_id": [ "GSM372328", "GSM372329" ], "type": "individual", "id": "GDS3539_38" }, { "dataset_id": "GDS3539", "description": "patient 13", "sample_id": [ "GSM372330", "GSM372331" ], "type": "individual", "id": "GDS3539_39" }, { "dataset_id": "GDS3539", "description": "patient 14", "sample_id": [ "GSM372332", "GSM372333" ], "type": "individual", "id": "GDS3539_40" }, { "dataset_id": "GDS3539", "description": "patient 15", "sample_id": [ "GSM372334" ], "type": "individual", "id": "GDS3539_41" }, { "dataset_id": "GDS3539", "description": "patient 16", "sample_id": [ "GSM372335", "GSM372336" ], "type": "individual", "id": "GDS3539_42" }, { "dataset_id": "GDS3539", "description": "patient 17", "sample_id": [ "GSM372337", "GSM372338" ], "type": "individual", "id": "GDS3539_43" }, { "dataset_id": "GDS3539", "description": "patient 18", "sample_id": [ "GSM372339", "GSM372340" ], "type": "individual", "id": "GDS3539_44" }, { "dataset_id": "GDS3539", "description": "patient 19", "sample_id": [ "GSM372341", "GSM372342" ], "type": "individual", "id": "GDS3539_45" }, { "dataset_id": "GDS3539", "description": "patient 20", "sample_id": [ "GSM372343", "GSM372344" ], "type": "individual", "id": "GDS3539_46" }, { "dataset_id": "GDS3539", "description": "patient 21", "sample_id": [ "GSM372345", "GSM372346" ], "type": "individual", "id": "GDS3539_47" }, { "dataset_id": "GDS3539", "description": "patient 22", "sample_id": [ "GSM372347", "GSM372348" ], "type": "individual", "id": "GDS3539_48" }, { "dataset_id": "GDS3539", "description": "patient 23", "sample_id": [ "GSM372349", "GSM372350" ], "type": "individual", "id": "GDS3539_49" }, { "dataset_id": "GDS3539", "description": "patient 24", "sample_id": [ "GSM372351", "GSM372352" ], "type": "individual", "id": "GDS3539_50" }, { "dataset_id": "GDS3539", "description": "patient 25", "sample_id": [ "GSM372353", "GSM372354" ], "type": "individual", "id": "GDS3539_51" }, { "dataset_id": "GDS3539", "description": "patient 26", "sample_id": [ "GSM372355", "GSM372356" ], "type": "individual", "id": "GDS3539_52" }, { "dataset_id": "GDS3539", "description": "patient 27", "sample_id": [ "GSM372357", "GSM372358" ], "type": "individual", "id": "GDS3539_53" }, { "dataset_id": "GDS3539", "description": "patient 28", "sample_id": [ "GSM372359", "GSM372360" ], "type": "individual", "id": "GDS3539_54" }, { "dataset_id": "GDS3539", "description": "patient 29", "sample_id": [ "GSM372361", "GSM372362" ], "type": "individual", "id": "GDS3539_55" }, { "dataset_id": "GDS3539", "description": "patient 30", "sample_id": [ "GSM372363", "GSM372364" ], "type": "individual", "id": "GDS3539_56" }, { "dataset_id": "GDS3539", "description": "patient 31", "sample_id": [ "GSM372365" ], "type": "individual", "id": "GDS3539_57" }, { "dataset_id": "GDS3539", "description": "patient 32", "sample_id": [ "GSM372366" ], "type": "individual", "id": "GDS3539_58" }, { "dataset_id": "GDS3539", "description": "patient 33", "sample_id": [ "GSM372367" ], "type": "individual", "id": "GDS3539_59" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3539", "version": 1.0, "instances": "82", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3539.tab", "compression": "gz" } ], [ [ "GDS354.tab" ], { "title": "Lithium response in yeast", "description": "Wild type CEN.PK113-7D grown with 20 g/L galactose. LiCl (10 mM, therapeutically relevant) added and samples analyzed at 0, 20, 40, 60 and 140 minutes after LiCl addition. Lithium inhibits phosphoglucomutase, affecting galactose uptake and growth.", "type": "Expression profiling by array", "pubmed_id": "12791685", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE461", "order": "none", "update_date": "Nov 19 2003", "subsets": [ { "dataset_id": "GDS354", "description": "0 minute", "sample_id": [ "GSM7490", "GSM7491", "GSM7492" ], "type": "time", "id": "GDS354_1" }, { "dataset_id": "GDS354", "description": "20 minute", "sample_id": [ "GSM7493" ], "type": "time", "id": "GDS354_2" }, { "dataset_id": "GDS354", "description": "40 minute", "sample_id": [ "GSM7494" ], "type": "time", "id": "GDS354_3" }, { "dataset_id": "GDS354", "description": "60 minute", "sample_id": [ "GSM7495" ], "type": "time", "id": "GDS354_4" }, { "dataset_id": "GDS354", "description": "140 minute", "sample_id": [ "GSM7496" ], "type": "time", "id": "GDS354_5" }, { "dataset_id": "GDS354", "description": "control", "sample_id": [ "GSM7490", "GSM7491", "GSM7492" ], "type": "agent", "id": "GDS354_6" }, { "dataset_id": "GDS354", "description": "lithium", "sample_id": [ "GSM7493", "GSM7494", "GSM7495", "GSM7496" ], "type": "agent", "id": "GDS354_7" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS354", "version": 1.0, "instances": "7", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS354.tab", "compression": "gz" } ], [ [ "GDS3540.tab" ], { "title": "Macrophages from tuberculosis infected subjects response to M. tuberculosis cell lysate ex vivo", "description": "Ex vivo analysis of macrophages from individuals with a history of latent, pulmonary and meningeal tuberculosis (TB) following treatment with cell lysates of Mycobacterium tuberculosis H37Rv. Results provide insight into the molecular basis of susceptibility to TB.", "type": "Expression profiling by array", "pubmed_id": "19057661", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE11199", "order": "none", "update_date": "Jun 24 2012", "subsets": [ { "dataset_id": "GDS3540", "description": "control", "sample_id": [ "GSM280331", "GSM280333", "GSM280335", "GSM280337", "GSM280339", "GSM280341", "GSM280343", "GSM280345", "GSM280347", "GSM280349", "GSM280351", "GSM280353" ], "type": "agent", "id": "GDS3540_1" }, { "dataset_id": "GDS3540", "description": "Mycobacterium tuberculosis H37Rv lysate", "sample_id": [ "GSM280332", "GSM280334", "GSM280336", "GSM280338", "GSM280340", "GSM280342", "GSM280344", "GSM280346", "GSM280348", "GSM280350", "GSM280352", "GSM280354" ], "type": "agent", "id": "GDS3540_2" }, { "dataset_id": "GDS3540", "description": "previous meningeal tuberculosis", "sample_id": [ "GSM280335", "GSM280336", "GSM280341", "GSM280342", "GSM280351", "GSM280352", "GSM280353", "GSM280354" ], "type": "disease state", "id": "GDS3540_3" }, { "dataset_id": "GDS3540", "description": "previous pulmonary tuberculosis", "sample_id": [ "GSM280333", "GSM280334", "GSM280339", "GSM280340", "GSM280347", "GSM280348", "GSM280349", "GSM280350" ], "type": "disease state", "id": "GDS3540_4" }, { "dataset_id": "GDS3540", "description": "latent tuberculosis", "sample_id": [ "GSM280331", "GSM280332", "GSM280337", "GSM280338", "GSM280343", "GSM280344", "GSM280345", "GSM280346" ], "type": "disease state", "id": "GDS3540_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3540", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3540.tab", "compression": "gz" } ], [ [ "GDS3544.tab" ], { "title": "Spinocerebellar ataxia type 1 knock-in model: cerebellum", "description": "Analysis of cerebella from spinocerebellar ataxia type 1 (SCA1) knockin animals at an early symptomatic disease stage. SCA1 is a neurodegenerative disorder caused by expansion of a glutamine tract in ataxin-1. Results provide insight into the molecular basis of cerebellar pathogenesis in SCA1.", "type": "Expression profiling by array", "pubmed_id": "18216249", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE9914", "order": "none", "update_date": "Mar 24 2009", "subsets": [ { "dataset_id": "GDS3544", "description": "SCA1 knock-in", "sample_id": [ "GSM250857", "GSM250858", "GSM250859", "GSM250860", "GSM250861", "GSM250862" ], "type": "genotype/variation", "id": "GDS3544_1" }, { "dataset_id": "GDS3544", "description": "SCA1 wildtype", "sample_id": [ "GSM250863", "GSM250864", "GSM250865", "GSM250866", "GSM250867", "GSM250868" ], "type": "genotype/variation", "id": "GDS3544_2" }, { "dataset_id": "GDS3544", "description": "4 weeks", "sample_id": [ "GSM250857", "GSM250858", "GSM250859", "GSM250863", "GSM250864", "GSM250865" ], "type": "age", "id": "GDS3544_3" }, { "dataset_id": "GDS3544", "description": "9 weeks", "sample_id": [ "GSM250860", "GSM250866" ], "type": "age", "id": "GDS3544_4" }, { "dataset_id": "GDS3544", "description": "12 weeks", "sample_id": [ "GSM250861", "GSM250862", "GSM250867", "GSM250868" ], "type": "age", "id": "GDS3544_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3544", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3544.tab", "compression": "gz" } ], [ [ "GDS3545.tab" ], { "title": "Spinocerebellar ataxia type 7 knock-in model: cerebellum", "description": "Analysis of cerebella from spinocerebellar ataxia type 7 (SCA7) knockin animals at an early symptomatic disease stage. SCA1 is a neurodegenerative disorder caused by expansion of a glutamine tract in ataxin-7. Results provide insight into the molecular basis of cerebellar pathogenesis in SCA7.", "type": "Expression profiling by array", "pubmed_id": "18216249", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE9914", "order": "none", "update_date": "Mar 24 2009", "subsets": [ { "dataset_id": "GDS3545", "description": "SCA7 knock-in", "sample_id": [ "GSM250870", "GSM250871", "GSM250873", "GSM250876", "GSM250878" ], "type": "genotype/variation", "id": "GDS3545_1" }, { "dataset_id": "GDS3545", "description": "SCA7 wildtype", "sample_id": [ "GSM250869", "GSM250872", "GSM250874", "GSM250875", "GSM250877" ], "type": "genotype/variation", "id": "GDS3545_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3545", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3545.tab", "compression": "gz" } ], [ [ "GDS3547.tab" ], { "title": "Human cytomegalovirus chemokine receptor U28 expression effect on fibroblast cell line", "description": "Analysis of fibroblast NIH-3T3 cells expressing the human cytomegalovirus (HCMV) chemokine receptor U28. HCMV proteins are present in malignancies such as colon cancer. U28 activates inflammatory and proliferative signaling pathways. Results provide insight into the role of U28 in oncogenesis.", "type": "Expression profiling by array", "pubmed_id": "19318580", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE13567", "order": "none", "update_date": "Apr 03 2009", "subsets": [ { "dataset_id": "GDS3547", "description": "control", "sample_id": [ "GSM341571", "GSM341572" ], "type": "agent", "id": "GDS3547_1" }, { "dataset_id": "GDS3547", "description": "U28", "sample_id": [ "GSM341573", "GSM341574" ], "type": "agent", "id": "GDS3547_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3547", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3547.tab", "compression": "gz" } ], [ [ "GDS3548.tab" ], { "title": "Cigarette smoke-induced pulmonary emphysema model", "description": "Analysis of lungs of A/J animals exposed to cigarette smoke (CS) for up to 6 months. A/J animals chronically exposed to CS develop pulmonary emphysema (PE). Results provide insight into the molecular mechanisms underlying the initiation and development of PE.", "type": "Expression profiling by array", "pubmed_id": "19286929", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE8790", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3548", "description": "control", "sample_id": [ "GSM218335", "GSM218336", "GSM218337", "GSM218339", "GSM218340", "GSM218341", "GSM218345", "GSM218346", "GSM218347", "GSM218351", "GSM218352", "GSM218353" ], "type": "agent", "id": "GDS3548_1" }, { "dataset_id": "GDS3548", "description": "cigarette smoke", "sample_id": [ "GSM218338", "GSM218342", "GSM218343", "GSM218344", "GSM218348", "GSM218349", "GSM218350", "GSM218354", "GSM218355", "GSM218356" ], "type": "agent", "id": "GDS3548_2" }, { "dataset_id": "GDS3548", "description": "1 d", "sample_id": [ "GSM218335", "GSM218336", "GSM218337", "GSM218338" ], "type": "time", "id": "GDS3548_3" }, { "dataset_id": "GDS3548", "description": "8 d", "sample_id": [ "GSM218339", "GSM218340", "GSM218341", "GSM218342", "GSM218343", "GSM218344" ], "type": "time", "id": "GDS3548_4" }, { "dataset_id": "GDS3548", "description": "1.5 mo", "sample_id": [ "GSM218345", "GSM218346", "GSM218347", "GSM218348", "GSM218349", "GSM218350" ], "type": "time", "id": "GDS3548_5" }, { "dataset_id": "GDS3548", "description": "6 mo", "sample_id": [ "GSM218351", "GSM218352", "GSM218353", "GSM218354", "GSM218355", "GSM218356" ], "type": "time", "id": "GDS3548_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3548", "version": 1.0, "instances": "22", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3548.tab", "compression": "gz" } ], [ [ "GDS3549.tab" ], { "title": "Norovirus infection effect on macrophage cell line", "description": "Analysis of macrophage RAW264.7 cells infected with murine norovirus type 1. Noroviruses cause non-bacterial gastroenteritis in humans. Results provide insight into the molecular pathogenesis of norovirus infections.", "type": "Expression profiling by array", "pubmed_id": "19211757", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12518", "order": "none", "update_date": "Sep 29 2009", "subsets": [ { "dataset_id": "GDS3549", "description": "norovirus", "sample_id": [ "GSM314220", "GSM314221", "GSM314222" ], "type": "infection", "id": "GDS3549_1" }, { "dataset_id": "GDS3549", "description": "control", "sample_id": [ "GSM314244", "GSM314245", "GSM314246" ], "type": "infection", "id": "GDS3549_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3549", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3549.tab", "compression": "gz" } ], [ [ "GDS355.tab" ], { "title": "Calorie restriction and aging (Mu11K-A)", "description": "Investigation of the effect of calorie restriction on the aging process. Gene expression profiles generated for control-fed 5 month, control-fed 30 month and calorie restricted 30 month C57BL/6 mice. Kidney tissue analyzed.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE459", "order": "none", "update_date": "Jun 23 2003", "subsets": [ { "dataset_id": "GDS355", "description": "control fed", "sample_id": [ "GSM7457", "GSM7459", "GSM7461", "GSM7463", "GSM7465", "GSM7467", "GSM7468", "GSM7469", "GSM7470", "GSM7471" ], "type": "protocol", "id": "GDS355_1" }, { "dataset_id": "GDS355", "description": "calorie-restricted", "sample_id": [ "GSM7447", "GSM7449", "GSM7451", "GSM7453", "GSM7455" ], "type": "protocol", "id": "GDS355_2" }, { "dataset_id": "GDS355", "description": "5 month", "sample_id": [ "GSM7467", "GSM7468", "GSM7469", "GSM7470", "GSM7471" ], "type": "age", "id": "GDS355_3" }, { "dataset_id": "GDS355", "description": "30 month", "sample_id": [ "GSM7447", "GSM7449", "GSM7451", "GSM7453", "GSM7455", "GSM7457", "GSM7459", "GSM7461", "GSM7463", "GSM7465" ], "type": "age", "id": "GDS355_4" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS355", "version": 1.0, "instances": "15", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS355.tab", "compression": "gz" } ], [ [ "GDS3550.tab" ], { "title": "GLI1 transformed kidney epithelial cell line", "description": "Analysis of kidney epithelial RK3E cells transformed by the oncogenic transcription factor GLI1. Results compared with the gene expression profile of a subgroup of medulloblastomas that shows constitutive activation of the Sonic hedgehog pathway with expression of GLI1.", "type": "Expression profiling by array", "pubmed_id": "18924150", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11987", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3550", "description": "GLI1 transformed", "sample_id": [ "GSM303371", "GSM303372", "GSM303373", "GSM303374" ], "type": "cell type", "id": "GDS3550_1" }, { "dataset_id": "GDS3550", "description": "control", "sample_id": [ "GSM303375", "GSM303376" ], "type": "cell type", "id": "GDS3550_2" }, { "dataset_id": "GDS3550", "description": "parental cell", "sample_id": [ "GSM303375", "GSM303376" ], "type": "other", "id": "GDS3550_3" }, { "dataset_id": "GDS3550", "description": "clone 1", "sample_id": [ "GSM303371", "GSM303372" ], "type": "other", "id": "GDS3550_4" }, { "dataset_id": "GDS3550", "description": "clone 2", "sample_id": [ "GSM303373", "GSM303374" ], "type": "other", "id": "GDS3550_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3550", "version": 1.0, "instances": "6", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3550.tab", "compression": "gz" } ], [ [ "GDS3551.tab" ], { "title": "Caveolin-1 deficiency effect on hearts", "description": "Analysis of hearts lacking caveolin-1 (Cav1), the primary protein component of caveolae in non-muscle cells. Cav1 deficiency leads to cardiac hypertrophy and contractile dysfunction. Results provide insight into the molecular mechanisms underlying cardiac hypertrophy induced by Cav1 deficiency.", "type": "Expression profiling by array", "pubmed_id": "18719368", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10849", "order": "none", "update_date": "Apr 16 2009", "subsets": [ { "dataset_id": "GDS3551", "description": "Cav1 null", "sample_id": [ "GSM275318", "GSM275319", "GSM275320" ], "type": "genotype/variation", "id": "GDS3551_1" }, { "dataset_id": "GDS3551", "description": "wild type", "sample_id": [ "GSM275315", "GSM275316", "GSM275317" ], "type": "genotype/variation", "id": "GDS3551_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3551", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3551.tab", "compression": "gz" } ], [ [ "GDS3552.tab" ], { "title": "Caveolin-3 deficiency effect on hearts", "description": "Analysis of hearts lacking caveolin-3 (Cav3), the primary protein component of caveolae in muscle cells. Cav3 deficiency leads to cardiac hypertrophy and contractile dysfunction. Results provide insight into the molecular mechanisms underlying cardiac hypertrophy induced by Cav3 deficiency.", "type": "Expression profiling by array", "pubmed_id": "18552160", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE10848", "order": "none", "update_date": "Apr 16 2009", "subsets": [ { "dataset_id": "GDS3552", "description": "wild type", "sample_id": [ "GSM275315", "GSM275316", "GSM275317" ], "type": "genotype/variation", "id": "GDS3552_1" }, { "dataset_id": "GDS3552", "description": "Cav3 null", "sample_id": [ "GSM275321", "GSM275322", "GSM275323" ], "type": "genotype/variation", "id": "GDS3552_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3552", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3552.tab", "compression": "gz" } ], [ [ "GDS3553.tab" ], { "title": "Monocytes and macrophages (RNG/MRC)", "description": "Comparison of monocytes and macrophages. Samples obtained from 86 patients with acute coronary syndrome. Results used as a reference to compare the performance of Affymetrix (GDS3554) and Illumina (GDS3555) arrays.", "type": "Expression profiling by array", "pubmed_id": "18578872", "platform": "GPL1946", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "26496", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "96", "value_type": "log ratio", "reference_series": "GSE10220", "order": "none", "update_date": "Apr 26 2009", "subsets": [ { "dataset_id": "GDS3553", "description": "macrophage", "sample_id": [ "GSM257886", "GSM257888", "GSM257890", "GSM257892", "GSM257894", "GSM257896", "GSM257898", "GSM257900", "GSM257902", "GSM257904", "GSM257906", "GSM257908", "GSM257910", "GSM257912", "GSM257914", "GSM257917", "GSM257919", "GSM257921", "GSM257923", "GSM257925", "GSM257927", "GSM257929", "GSM257937", "GSM257939", "GSM257941", "GSM257943", "GSM257945", "GSM257947", "GSM257949", "GSM257951", "GSM257953", "GSM257955", "GSM257958", "GSM257960", "GSM257962", "GSM257964", "GSM257966", "GSM257968", "GSM257970", "GSM257972", "GSM257977", "GSM257982", "GSM257984", "GSM257986", "GSM257990", "GSM257992", "GSM257996", "GSM258006" ], "type": "cell type", "id": "GDS3553_1" }, { "dataset_id": "GDS3553", "description": "monocyte", "sample_id": [ "GSM257887", "GSM257889", "GSM257891", "GSM257893", "GSM257895", "GSM257897", "GSM257899", "GSM257901", "GSM257903", "GSM257905", "GSM257907", "GSM257909", "GSM257911", "GSM257913", "GSM257916", "GSM257918", "GSM257920", "GSM257922", "GSM257924", "GSM257926", "GSM257928", "GSM257930", "GSM257938", "GSM257940", "GSM257942", "GSM257944", "GSM257946", "GSM257948", "GSM257950", "GSM257952", "GSM257954", "GSM257956", "GSM257959", "GSM257961", "GSM257963", "GSM257965", "GSM257967", "GSM257969", "GSM257971", "GSM257973", "GSM257981", "GSM257983", "GSM257985", "GSM257988", "GSM257991", "GSM257993", "GSM257994", "GSM257989" ], "type": "cell type", "id": 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"description": "individual 13", "sample_id": [ "GSM257906", "GSM257907" ], "type": "individual", "id": "GDS3553_15" }, { "dataset_id": "GDS3553", "description": "individual 14", "sample_id": [ "GSM257908", "GSM257909" ], "type": "individual", "id": "GDS3553_16" }, { "dataset_id": "GDS3553", "description": "individual 15", "sample_id": [ "GSM257910", "GSM257911" ], "type": "individual", "id": "GDS3553_17" }, { "dataset_id": "GDS3553", "description": "individual 16", "sample_id": [ "GSM257912", "GSM257913" ], "type": "individual", "id": "GDS3553_18" }, { "dataset_id": "GDS3553", "description": "individual 17", "sample_id": [ "GSM257914", "GSM257916" ], "type": "individual", "id": "GDS3553_19" }, { "dataset_id": "GDS3553", "description": "individual 18", "sample_id": [ "GSM257917", "GSM257918" ], "type": "individual", "id": "GDS3553_20" }, { "dataset_id": "GDS3553", "description": "individual 19", "sample_id": [ "GSM257919", "GSM257920" ], "type": "individual", "id": "GDS3553_21" }, { "dataset_id": "GDS3553", "description": "individual 20", "sample_id": [ "GSM257921", "GSM257922" ], "type": "individual", "id": "GDS3553_22" }, { "dataset_id": "GDS3553", "description": "individual 21", "sample_id": [ "GSM257923", "GSM257924" ], "type": "individual", "id": "GDS3553_23" }, { "dataset_id": "GDS3553", "description": "individual 22", "sample_id": [ "GSM257925", "GSM257926" ], "type": "individual", "id": "GDS3553_24" }, { "dataset_id": "GDS3553", "description": "individual 23", "sample_id": [ "GSM257927", "GSM257928" ], "type": "individual", "id": "GDS3553_25" }, { "dataset_id": "GDS3553", "description": "individual 24", "sample_id": [ "GSM257930", "GSM257929" ], "type": "individual", "id": "GDS3553_26" }, { "dataset_id": "GDS3553", "description": "individual 25", "sample_id": [ "GSM257937", "GSM257938" ], "type": "individual", "id": "GDS3553_27" }, { "dataset_id": "GDS3553", "description": "individual 26", "sample_id": [ "GSM257939", "GSM257940" ], "type": "individual", "id": "GDS3553_28" }, { "dataset_id": "GDS3553", "description": "individual 27", "sample_id": [ "GSM257941", "GSM257942" ], "type": "individual", "id": "GDS3553_29" }, { "dataset_id": "GDS3553", "description": "individual 28", "sample_id": [ "GSM257943", "GSM257944" ], "type": "individual", "id": "GDS3553_30" }, { "dataset_id": "GDS3553", "description": "individual 29", "sample_id": [ "GSM257945", "GSM257946" ], "type": "individual", "id": "GDS3553_31" }, { "dataset_id": "GDS3553", "description": "individual 30", "sample_id": [ "GSM257947", "GSM257948" ], "type": "individual", "id": "GDS3553_32" }, { "dataset_id": "GDS3553", "description": "individual 31", "sample_id": [ "GSM257949", "GSM257950" ], "type": "individual", "id": "GDS3553_33" }, { "dataset_id": "GDS3553", "description": "individual 32", "sample_id": [ "GSM257951", "GSM257952" ], "type": "individual", "id": "GDS3553_34" }, { "dataset_id": "GDS3553", "description": "individual 33", "sample_id": [ "GSM257953", "GSM257954" ], "type": "individual", "id": "GDS3553_35" }, { "dataset_id": "GDS3553", "description": "individual 34", "sample_id": [ "GSM257955", "GSM257956" ], "type": "individual", "id": "GDS3553_36" }, { "dataset_id": "GDS3553", "description": "individual 35", "sample_id": [ "GSM257958", "GSM257959" ], "type": "individual", "id": "GDS3553_37" }, { "dataset_id": "GDS3553", "description": "individual 36", "sample_id": [ "GSM257960", "GSM257961" ], "type": "individual", "id": "GDS3553_38" }, { "dataset_id": "GDS3553", "description": "individual 37", "sample_id": [ "GSM257962", "GSM257963" ], "type": "individual", "id": "GDS3553_39" }, { "dataset_id": "GDS3553", "description": "individual 38", "sample_id": [ "GSM257964", "GSM257965" ], "type": "individual", "id": "GDS3553_40" }, { "dataset_id": "GDS3553", "description": "individual 40", "sample_id": [ "GSM257966", "GSM257967" ], "type": "individual", "id": "GDS3553_41" }, { "dataset_id": "GDS3553", "description": "individual 41", "sample_id": [ "GSM257968", "GSM257969" ], "type": "individual", "id": "GDS3553_42" }, { "dataset_id": "GDS3553", "description": "individual S11", "sample_id": [ "GSM257970", "GSM257971" ], "type": "individual", "id": "GDS3553_43" }, { "dataset_id": "GDS3553", "description": "individual S15", "sample_id": [ "GSM257972", "GSM257973" ], "type": "individual", "id": "GDS3553_44" }, { "dataset_id": "GDS3553", "description": "individual S16", "sample_id": [ "GSM257977", "GSM257981" ], "type": "individual", "id": "GDS3553_45" }, { "dataset_id": "GDS3553", "description": "individual S20", "sample_id": [ "GSM257982", "GSM257983" ], "type": "individual", "id": "GDS3553_46" }, { "dataset_id": "GDS3553", "description": "individual S21", "sample_id": [ "GSM257984", "GSM257985" ], "type": "individual", "id": "GDS3553_47" }, { "dataset_id": "GDS3553", "description": "individual S26", "sample_id": [ "GSM257986", "GSM257988" ], "type": "individual", "id": "GDS3553_48" }, { "dataset_id": "GDS3553", "description": "individual S61", "sample_id": [ "GSM257990", "GSM257991" ], "type": "individual", "id": "GDS3553_49" }, { "dataset_id": "GDS3553", "description": "individual S101", "sample_id": [ "GSM257992", "GSM257993" ], "type": "individual", "id": "GDS3553_50" }, { "dataset_id": "GDS3553", "description": "individual S121", "sample_id": [ "GSM257994", "GSM257996" ], "type": "individual", "id": "GDS3553_51" }, { "dataset_id": "GDS3553", "description": "individual S28", "sample_id": [ "GSM257989", "GSM258006" ], "type": "individual", "id": "GDS3553_52" } ], "taxid": "9606", "genes": 22593, "aggregation_function": "mean", "name": "GDS3553", "version": 1.0, "instances": "96", "variables": 22597, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3553.tab", "compression": "gz" } ], [ [ "GDS3554.tab" ], { "title": "Monocytes and macrophages (Affymetrix)", "description": "Comparison of monocytes and macrophages. Samples obtained from patients with acute coronary syndrome. Results compared to the performance of Illumina arrays (GDS3555). The result from two-color arrays (GDS3553) was used as a reference for the Illumina and Affymetrix arrays.", "type": "Expression profiling by array", "pubmed_id": "18578872", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE11430", "order": "none", "update_date": "Apr 26 2009", "subsets": [ { "dataset_id": "GDS3554", "description": "monocyte", "sample_id": [ "GSM257664", "GSM257666", "GSM257668", "GSM257670", "GSM257672" ], "type": "cell type", "id": "GDS3554_1" }, { "dataset_id": "GDS3554", "description": "macrophage", "sample_id": [ "GSM257665", "GSM257667", "GSM257669", "GSM257671", "GSM257673" ], "type": "cell type", "id": "GDS3554_2" }, { "dataset_id": "GDS3554", "description": "16", "sample_id": [ "GSM257664", "GSM257665" ], "type": "individual", "id": "GDS3554_3" }, { "dataset_id": "GDS3554", "description": "20", "sample_id": [ "GSM257666", "GSM257667" ], "type": "individual", "id": "GDS3554_4" }, { "dataset_id": "GDS3554", "description": "21", "sample_id": [ "GSM257668", "GSM257669" ], "type": "individual", "id": "GDS3554_5" }, { "dataset_id": "GDS3554", "description": "26", "sample_id": [ "GSM257670", "GSM257671" ], "type": "individual", "id": "GDS3554_6" }, { "dataset_id": "GDS3554", "description": "28", "sample_id": [ "GSM257672", "GSM257673" ], "type": "individual", "id": "GDS3554_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3554", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3554.tab", "compression": "gz" } ], [ [ "GDS3555.tab" ], { "title": "Monocytes and macrophages (Illumina)", "description": "Comparison of monocytes and macrophages. Samples obtained from patients with acute coronary syndrome. Results compared to the performance of Affymetrix arrays (GDS3554). The result from two-color arrays (GDS3553) was used as a reference for the Illumina and Affymetrix arrays.", "type": "Expression profiling by array", "pubmed_id": "18578872", "platform": "GPL6097", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47296", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE10213", "order": "none", "update_date": "Apr 21 2009", "subsets": [ { "dataset_id": "GDS3555", "description": "monocyte", "sample_id": [ "GSM257770", "GSM257794", "GSM257796", "GSM257798", "GSM257801" ], "type": "cell type", "id": "GDS3555_1" }, { "dataset_id": "GDS3555", "description": "macrophage", "sample_id": [ "GSM257793", "GSM257795", "GSM257797", "GSM257799", "GSM257805" ], "type": "cell type", "id": "GDS3555_2" }, { "dataset_id": "GDS3555", "description": "individual 16", "sample_id": [ "GSM257770", "GSM257793" ], "type": "individual", "id": "GDS3555_3" }, { "dataset_id": "GDS3555", "description": "individual 20", "sample_id": [ "GSM257794", "GSM257795" ], "type": "individual", "id": "GDS3555_4" }, { "dataset_id": "GDS3555", "description": "individual 21", "sample_id": [ "GSM257796", "GSM257797" ], "type": "individual", "id": "GDS3555_5" }, { "dataset_id": "GDS3555", "description": "individual 26", "sample_id": [ "GSM257798", "GSM257799" ], "type": "individual", "id": "GDS3555_6" }, { "dataset_id": "GDS3555", "description": "individual 28", "sample_id": [ "GSM257801", "GSM257805" ], "type": "individual", "id": "GDS3555_7" } ], "taxid": "9606", "genes": 44916, "aggregation_function": "mean", "name": "GDS3555", "version": 1.0, "instances": "10", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3555.tab", "compression": "gz" } ], [ [ "GDS3556.tab" ], { "title": "Torcetrapib effect on adrenal carcinoma cell line", "description": "Analysis of H295 adrenal carcinoma cells treated with torcetrapib, an anti-cholesterol drug. Adverse side effects of torcetrapib treatment include changes in blood pressure, potassium, sodium, and aldosterone. Results provide insight into the molecular basis of the off-target side effects.", "type": "Expression profiling by array", "pubmed_id": "19164467", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE15918", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3556", "description": "solvent control", "sample_id": [ "GSM399572", "GSM399573", "GSM399574" ], "type": "agent", "id": "GDS3556_1" }, { "dataset_id": "GDS3556", "description": "angiotensin II", "sample_id": [ "GSM399575", "GSM399576", "GSM399577" ], "type": "agent", "id": "GDS3556_2" }, { "dataset_id": "GDS3556", "description": "torcetrapib", "sample_id": [ "GSM399578", "GSM399579", "GSM399580" ], "type": "agent", "id": "GDS3556_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3556", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3556.tab", "compression": "gz" } ], [ [ "GDS3557.tab" ], { "title": "ERG transcription factor depletion effect on endothelial cell", "description": "Analysis of endothelial HUVEC cells depleted for the ETS-related gene (ERG) product. ERG is a member of the ETS family of transcription factors. Results provide insight into the role of ERG in the regulation of normal endothelial cell function.", "type": "Expression profiling by array", "pubmed_id": "19359602", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE14801", "order": "none", "update_date": "May 22 2009", "subsets": [ { "dataset_id": "GDS3557", "description": "ERG siRNA", "sample_id": [ "GSM370399", "GSM370400" ], "type": "agent", "id": "GDS3557_1" }, { "dataset_id": "GDS3557", "description": "non-sense siRNA", "sample_id": [ "GSM370401", "GSM370402" ], "type": "agent", "id": "GDS3557_2" }, { "dataset_id": "GDS3557", "description": "control vector", "sample_id": [ "GSM370403", "GSM370404" ], "type": "agent", "id": "GDS3557_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3557", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3557.tab", "compression": "gz" } ], [ [ "GDS3558.tab" ], { "title": "Deferasirox effect on leukemia cell line: dose response", "description": "Analysis of leukemia K562 cells treated with 10 or 50 uM deferasirox. Deferasirox is an iron chelator taken orally to treat iron toxicity. Iron depletion by deferasirox inhibits cancer cell proliferation in vitro. Results provide insight into the molecular basis of this anti-proliferative effect.", "type": "Expression profiling by array", "pubmed_id": "19298223", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11670", "order": "none", "update_date": "May 22 2009", "subsets": [ { "dataset_id": "GDS3558", "description": "untreated", "sample_id": [ "GSM296608", "GSM296609" ], "type": "agent", "id": "GDS3558_1" }, { "dataset_id": "GDS3558", "description": "deferasirox", "sample_id": [ "GSM296612", "GSM296613", "GSM296615", "GSM296616" ], "type": "agent", "id": "GDS3558_2" }, { "dataset_id": "GDS3558", "description": "control", "sample_id": [ "GSM296608", "GSM296609" ], "type": "dose", "id": "GDS3558_3" }, { "dataset_id": "GDS3558", "description": "10 uM", "sample_id": [ "GSM296612", "GSM296613" ], "type": "dose", "id": "GDS3558_4" }, { "dataset_id": "GDS3558", "description": "50 uM", "sample_id": [ "GSM296615", "GSM296616" ], "type": "dose", "id": "GDS3558_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3558", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3558.tab", "compression": "gz" } ], [ [ "GDS3559.tab" ], { "title": "Occupational benzene exposure: peripheral blood mononuclear cells (HG-U133A)", "description": "Analysis of peripheral blood mononuclear cells from shoe factory workers exposed to benzene. Benzene is a leukemogen. Results provide insight into molecular mechanisms of benzene carcinogenicity.", "type": "Expression profiling by array", "pubmed_id": "19162166", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE9569", "order": "none", "update_date": "May 29 2009", "subsets": [ { "dataset_id": "GDS3559", "description": "control", "sample_id": [ "GSM243780", "GSM243781", "GSM243782", "GSM243783", "GSM243784", "GSM243785", "GSM243786", "GSM243787" ], "type": "agent", "id": "GDS3559_1" }, { "dataset_id": "GDS3559", "description": "benzene", "sample_id": [ "GSM243788", "GSM243789", "GSM243790", "GSM243791", "GSM243792", "GSM243793", "GSM243794", "GSM243795" ], "type": "agent", "id": "GDS3559_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3559", "version": 1.0, "instances": "16", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3559.tab", "compression": "gz" } ], [ [ "GDS356.tab" ], { "title": "Calorie restriction and aging (Mu11K-B)", "description": "Investigation of the effect of calorie restriction on the aging process. Gene expression profiles generated for control-fed 5 month, control-fed 30 month and calorie restricted 30 month C57BL/6 mice. Kidney tissue analyzed.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE459", "order": "none", "update_date": "Jun 23 2003", "subsets": [ { "dataset_id": "GDS356", "description": "control fed", "sample_id": [ "GSM7458", "GSM7460", "GSM7462", "GSM7464", "GSM7466", "GSM7472", "GSM7473", "GSM7474", "GSM7475", "GSM7476" ], "type": "protocol", "id": "GDS356_1" }, { "dataset_id": "GDS356", "description": "calorie-restricted", "sample_id": [ "GSM7448", "GSM7450", "GSM7452", "GSM7454", "GSM7456" ], "type": "protocol", "id": "GDS356_2" }, { "dataset_id": "GDS356", "description": "5 month", "sample_id": [ "GSM7472", "GSM7473", "GSM7474", "GSM7475", "GSM7476" ], "type": "age", "id": "GDS356_3" }, { "dataset_id": "GDS356", "description": "30 month", "sample_id": [ "GSM7448", "GSM7450", "GSM7452", "GSM7454", "GSM7456", "GSM7458", "GSM7460", "GSM7462", "GSM7464", "GSM7466" ], "type": "age", "id": "GDS356_4" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS356", "version": 1.0, "instances": "15", "variables": 6163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS356.tab", "compression": "gz" } ], [ [ "GDS3560.tab" ], { "title": "Occupational benzene exposure: peripheral blood mononuclear cells (HG-U133B)", "description": "Analysis of peripheral blood mononuclear cells from shoe factory workers exposed to benzene. Benzene is a leukemogen. Results provide insight into molecular mechanisms of benzene carcinogenicity.", "type": "Expression profiling by array", "pubmed_id": "19162166", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE9569", "order": "none", "update_date": "May 29 2009", "subsets": [ { "dataset_id": "GDS3560", "description": "control", "sample_id": [ "GSM243796", "GSM243797", "GSM243798", "GSM243799", "GSM243800", "GSM243801", "GSM243802", "GSM243803" ], "type": "agent", "id": "GDS3560_1" }, { "dataset_id": "GDS3560", "description": "benzene", "sample_id": [ "GSM243804", "GSM243805", "GSM243806", "GSM243807", "GSM243808", "GSM243809", "GSM243810", "GSM243811" ], "type": "agent", "id": "GDS3560_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3560", "version": 1.0, "instances": "16", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3560.tab", "compression": "gz" } ], [ [ "GDS3561.tab" ], { "title": "Occupational benzene exposure: peripheral blood mononuclear cells (HumanRef-8)", "description": "Analysis of peripheral blood mononuclear cells from shoe factory workers exposed to benzene. Benzene is a leukemogen. Results provide insight into molecular mechanisms of benzene carcinogenicity.", "type": "Expression profiling by array", "pubmed_id": "19162166", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE9569", "order": "none", "update_date": "Sep 15 2009", "subsets": [ { "dataset_id": "GDS3561", "description": "control", "sample_id": [ "GSM241938", "GSM241939", "GSM241940", "GSM241941", "GSM241942", "GSM241943", "GSM241944", "GSM241945" ], "type": "agent", "id": "GDS3561_1" }, { "dataset_id": "GDS3561", "description": "benzene", "sample_id": [ "GSM241946", "GSM241947", "GSM241948", "GSM241949", "GSM241950", "GSM241951", "GSM241952", "GSM241953" ], "type": "agent", "id": "GDS3561_2" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS3561", "version": 1.0, "instances": "16", "variables": 22008, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3561.tab", "compression": "gz" } ], [ [ "GDS3564.tab" ], { "title": "Rapid stimulation effect on an in vitro atrial (HL-1) myocyte model", "description": "Analysis of spontaneously contracting HL-1 atrial cells rapidly stimulated for 24 hr. The resulting electrical remodeling of the HL-1 cells resembles that seen in atrial fibrillation (AF)/atrial tachycardia (AT). Results provide insight into the molecular basis of early atrial myocyte remodeling.", "type": "Expression profiling by array", "pubmed_id": "19615375", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE10598", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3564", "description": "rapid electric stimulation", "sample_id": [ "GSM267172", "GSM267174" ], "type": "stress", "id": "GDS3564_1" }, { "dataset_id": "GDS3564", "description": "control", "sample_id": [ "GSM267173", "GSM267175" ], "type": "stress", "id": "GDS3564_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3564", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3564.tab", "compression": "gz" } ], [ [ "GDS3566.tab" ], { "title": "Mutant transcription factor ThPOK effect on memory P14 T cells", "description": "Analysis of CD8 P14 memory cells from helper-deficient (hd/hd) animals harboring a mutation in the gene encoding ThPOK. Clonal expansion is significantly reduced in CD8 T cells lacking functional ThPOK. Results provide insight into the role of ThPOK in CD8 T cell response to acute viral infection.", "type": "Expression profiling by array", "pubmed_id": "19734230", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE17812", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3566", "description": "control", "sample_id": [ "GSM426400", "GSM426401" ], "type": "genotype/variation", "id": "GDS3566_1" }, { "dataset_id": "GDS3566", "description": "mutant ThPOK", "sample_id": [ "GSM426402", "GSM426403" ], "type": "genotype/variation", "id": "GDS3566_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3566", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3566.tab", "compression": "gz" } ], [ [ "GDS3567.tab" ], { "title": "VEGF-A effect on endothelial cell line: time course (HG-U133 Plus 2.0)", "description": "Analysis of umbilical vein endothelial cells (HUVEC) treated with VEGF-A for up to 150 minutes in vitro. VEGF-A is a major trigger of vasculogenesis and physiologic angiogenesis. Results provide insight into the molecular mechanisms underlying the vasculogenic and angiogenic activity of VEGF-A.", "type": "Expression profiling by array", "pubmed_id": "19718476", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE15464", "order": "none", "update_date": "Oct 07 2009", "subsets": [ { "dataset_id": "GDS3567", "description": "untreated", "sample_id": [ "GSM385333" ], "type": "agent", "id": "GDS3567_1" }, { "dataset_id": "GDS3567", "description": "VEGF-A", "sample_id": [ "GSM385338", "GSM385350", "GSM385353" ], "type": "agent", "id": "GDS3567_2" }, { "dataset_id": "GDS3567", "description": "control", "sample_id": [ "GSM385333" ], "type": "time", "id": "GDS3567_3" }, { "dataset_id": "GDS3567", "description": "30 min", "sample_id": [ "GSM385338" ], "type": "time", "id": "GDS3567_4" }, { "dataset_id": "GDS3567", "description": "60 min", "sample_id": [ "GSM385350" ], "type": "time", "id": "GDS3567_5" }, { "dataset_id": "GDS3567", "description": "150 min", "sample_id": [ "GSM385353" ], "type": "time", "id": "GDS3567_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3567", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3567.tab", "compression": "gz" } ], [ [ "GDS3568.tab" ], { "title": "VEGF-A effect on endothelial cell line: time course (HG-U133A)", "description": "Analysis of umbilical vein endothelial cells (HUVEC) treated with VEGF-A or EGF for up to 6 hours. VEGF-A is a major trigger of vasculogenesis and angiogenesis. EGF is a general growth factor. Results provide insight into the mechanisms underlying the vasculogenic and angiogenic activity of VEGF-A.", "type": "Expression profiling by array", "pubmed_id": "19718476", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE10778", "order": "none", "update_date": "Oct 07 2009", "subsets": [ { "dataset_id": "GDS3568", "description": "untreated", "sample_id": [ "GSM272113" ], "type": "agent", "id": "GDS3568_1" }, { "dataset_id": "GDS3568", "description": "VEGF-A", "sample_id": [ "GSM272114", "GSM272115", "GSM272116", "GSM272117" ], "type": "agent", "id": "GDS3568_2" }, { "dataset_id": "GDS3568", "description": "EGF", "sample_id": [ "GSM272118", "GSM272119", "GSM272120", "GSM272121" ], "type": "agent", "id": "GDS3568_3" }, { "dataset_id": "GDS3568", "description": "control", "sample_id": [ "GSM272113" ], "type": "time", "id": "GDS3568_4" }, { "dataset_id": "GDS3568", "description": "30 min", "sample_id": [ "GSM272114", "GSM272118" ], "type": "time", "id": "GDS3568_5" }, { "dataset_id": "GDS3568", "description": "60 min", "sample_id": [ "GSM272115", "GSM272119" ], "type": "time", "id": "GDS3568_6" }, { "dataset_id": "GDS3568", "description": "150 min", "sample_id": [ "GSM272116", "GSM272120" ], "type": "time", "id": "GDS3568_7" }, { "dataset_id": "GDS3568", "description": "360 min", "sample_id": [ "GSM272117", "GSM272121" ], "type": "time", "id": "GDS3568_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3568", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3568.tab", "compression": "gz" } ], [ [ "GDS3570.tab" ], { "title": "VEGF-A effect on endothelial cell line: time course (HG-U133B)", "description": "Analysis of umbilical vein endothelial cells (HUVEC) treated with VEGF-A for up to 6 hours in vitro. VEGF-A is a major trigger of vasculogenesis and physiologic angiogenesis. Results provide insight into the molecular mechanisms underlying the vasculogenic and angiogenic activity of VEGF-A.", "type": "Expression profiling by array", "pubmed_id": "19718476", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE10778", "order": "none", "update_date": "Oct 07 2009", "subsets": [ { "dataset_id": "GDS3570", "description": "untreated", "sample_id": [ "GSM272122" ], "type": "agent", "id": "GDS3570_1" }, { "dataset_id": "GDS3570", "description": "VEGF-A", "sample_id": [ "GSM272123", "GSM272124", "GSM272125", "GSM272126" ], "type": "agent", "id": "GDS3570_2" }, { "dataset_id": "GDS3570", "description": "control", "sample_id": [ "GSM272122" ], "type": "time", "id": "GDS3570_3" }, { "dataset_id": "GDS3570", "description": "30 min", "sample_id": [ "GSM272123" ], "type": "time", "id": "GDS3570_4" }, { "dataset_id": "GDS3570", "description": "60 min", "sample_id": [ "GSM272124" ], "type": "time", "id": "GDS3570_5" }, { "dataset_id": "GDS3570", "description": "150 min", "sample_id": [ "GSM272125" ], "type": "time", "id": "GDS3570_6" }, { "dataset_id": "GDS3570", "description": "360 min", "sample_id": [ "GSM272126" ], "type": "time", "id": "GDS3570_7" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3570", "version": 1.0, "instances": "5", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3570.tab", "compression": "gz" } ], [ [ "GDS3571.tab" ], { "title": "Jag1 expression effect on endometrial stromal cells", "description": "Analysis of endometrial stromal cells engineered to have an increased expression of Jag1. Jag1 is a Notch ligand. Results provide insight into the role of Notch signaling in endometrial cells.", "type": "Expression profiling by array", "pubmed_id": "19607805", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE16906", "order": "none", "update_date": "Oct 07 2009", "subsets": [ { "dataset_id": "GDS3571", "description": "control", "sample_id": [ "GSM423834", "GSM423842", "GSM423843" ], "type": "agent", "id": "GDS3571_1" }, { "dataset_id": "GDS3571", "description": "Jag1", "sample_id": [ "GSM423835", "GSM423840", "GSM423841" ], "type": "agent", "id": "GDS3571_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3571", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3571.tab", "compression": "gz" } ], [ [ "GDS3573.tab" ], { "title": "Chlamydia pneumonia infection effect on dendritic cells", "description": "Analysis of monocyte-derived dendritic cells infected with Chlamydia pneumonia. C. pneumonia is a human respiratory pathogen associated with various chronic diseases such as asthma and atherosclerosis. Results provide insight into the host defense response to C. pneumonia infections.", "type": "Expression profiling by array", "pubmed_id": "19643200", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE12806", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3573", "description": "C. pneumonia", "sample_id": [ "GSM321607", "GSM321608" ], "type": "infection", "id": "GDS3573_1" }, { "dataset_id": "GDS3573", "description": "control", "sample_id": [ "GSM321605", "GSM321606" ], "type": "infection", "id": "GDS3573_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3573", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3573.tab", "compression": "gz" } ], [ [ "GDS3574.tab" ], { "title": "Zfp36l2 deficiency effect on the fetal liver", "description": "Analysis of E14.5 fetal livers lacking Zfp36l2, a member of the tristetraprolin family of tandem CCCH zinc finger proteins. Knockout animals exhibit pancytopenia and decreased hematopoietic progenitor cells from fetal liver. Results provide insight into the role of Zfp36l2 in hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "19633199", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE15146", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3574", "description": "wild-type", "sample_id": [ "GSM378250", "GSM378251", "GSM378252", "GSM378253", "GSM378254" ], "type": "genotype/variation", "id": "GDS3574_1" }, { "dataset_id": "GDS3574", "description": "Zfp36l2 null", "sample_id": [ "GSM378255", "GSM378256", "GSM378257", "GSM378258", "GSM378259" ], "type": "genotype/variation", "id": "GDS3574_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3574", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3574.tab", "compression": "gz" } ], [ [ "GDS3575.tab" ], { "title": "Aryl hydrocarbon receptor deficiency effect on Langerhan cells", "description": "Analysis of Langerhan cells (LCs) lacking the aryl hydrocarbon receptor (AhR). LCs are Ag-presenting cells of the epidermis. AhR is a ligand-activated transcription factor involved in low molecular mass chemical metabolism and cell differentiation. Results provide insight into the role of AhR in LC.", "type": "Expression profiling by array", "pubmed_id": "19454665", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE13130", "order": "none", "update_date": "Oct 08 2009", "subsets": [ { "dataset_id": "GDS3575", "description": "wild-type", "sample_id": [ "GSM328766", "GSM328767" ], "type": "genotype/variation", "id": "GDS3575_1" }, { "dataset_id": "GDS3575", "description": "AhR null", "sample_id": [ "GSM328764", "GSM328765" ], "type": "genotype/variation", "id": "GDS3575_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3575", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3575.tab", "compression": "gz" } ], [ [ "GDS3576.tab" ], { "title": "Diamond-Blackfan anaemia: fibroblasts", "description": "Analysis of fibroblasts from patients with Diamond-Blackfan anaemia (DBA). DBA is a rare inherited red cell hypoplasia characterized by a defect in the maturation of erythroid progenitors. Results provide insight into the involvement of non-hematopoietic tissues in DBA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "19765279", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE14335", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3576", "description": "control", "sample_id": [ "GSM358669", "GSM358670", "GSM358671", "GSM358672", "GSM358673", "GSM358674" ], "type": "disease state", "id": "GDS3576_1" }, { "dataset_id": "GDS3576", "description": "Diamond-Blackfan anaemia", "sample_id": [ "GSM358675", "GSM358676", "GSM358677", "GSM358678" ], "type": "disease state", "id": "GDS3576_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3576", "version": 1.0, "instances": "10", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3576.tab", "compression": "gz" } ], [ [ "GDS3577.tab" ], { "title": "Cbfbeta deficiency effect on regulatory T cells", "description": "Analysis of regulatory T cells lacking Cbfbeta. Cbfbeta is a cofactor for the Runx family of transcription factors. Results provide insight into the role of the Runx1-Cbfbeta transcription complex in regulatory T cell function.", "type": "Expression profiling by array", "pubmed_id": "19800266", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE18148", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3577", "description": "control", "sample_id": [ "GSM453646", "GSM453648", "GSM453649" ], "type": "genotype/variation", "id": "GDS3577_1" }, { "dataset_id": "GDS3577", "description": "Cbfbeta null", "sample_id": [ "GSM453647", "GSM453650", "GSM453651" ], "type": "genotype/variation", "id": "GDS3577_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3577", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3577.tab", "compression": "gz" } ], [ [ "GDS3578.tab" ], { "title": "Beta-catenin depletion effect on multiple myeloma cell line", "description": "Analysis of multiple myeloma MM1.S cells depleted for beta-catenin. Beta-catenin is an effector of the Wnt signaling pathway. Results provide insight into the role of Wnt/beta-catenin signaling in the progression of multiple myeloma.", "type": "Expression profiling by array", "pubmed_id": "19652203", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE17385", "order": "none", "update_date": "Nov 10 2009", "subsets": [ { "dataset_id": "GDS3578", "description": "control", "sample_id": [ "GSM434408", "GSM434409", "GSM434410" ], "type": "protocol", "id": "GDS3578_1" }, { "dataset_id": "GDS3578", "description": "beta-catenin depletion", "sample_id": [ "GSM434411", "GSM434412", "GSM434413" ], "type": "protocol", "id": "GDS3578_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3578", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3578.tab", "compression": "gz" } ], [ [ "GDS3579.tab" ], { "title": "Fer-1 null mutants", "description": "Analysis of fer-1 loss of function C. elegans mutants. The fer-1 gene encodes a homolog for the human Dysferlin gene. Mutations in the human Dysferlin gene results in Limb Girdle Muscular Dystrophy 2B (LGMD2B). Results provide insight into the molecular pathogenesis of LGMD2B.", "type": "Expression profiling by array", "pubmed_id": "19755517", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE16753", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3579", "description": "wild type", "sample_id": [ "GSM419959", "GSM419960", "GSM419961", "GSM419962" ], "type": "genotype/variation", "id": "GDS3579_1" }, { "dataset_id": "GDS3579", "description": "fer-1 hc1ts null", "sample_id": [ "GSM419963", "GSM419964", "GSM419965", "GSM419966" ], "type": "genotype/variation", "id": "GDS3579_2" }, { "dataset_id": "GDS3579", "description": "fer-1 hc24ts null", "sample_id": [ "GSM419967", "GSM419968", "GSM419969", "GSM419970" ], "type": "genotype/variation", "id": "GDS3579_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3579", "version": 1.0, "instances": "12", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3579.tab", "compression": "gz" } ], [ [ "GDS358.tab" ], { "title": "Leprosy lesions", "description": "Molecular characterization of lepromatous leprosy (LL) and borderline tuberculoid (BT) leprosy skin lesions.", "type": "Expression profiling by array", "pubmed_id": "12970564", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE443", "order": "none", "update_date": "Jun 24 2003", "subsets": [ { "dataset_id": "GDS358", "description": "lepromatous leprosy", "sample_id": [ "GSM6766", "GSM6768", "GSM6769", "GSM6773", "GSM6774", "GSM6775" ], "type": "disease state", "id": "GDS358_1" }, { "dataset_id": "GDS358", "description": "borderline tuberculoid leprosy", "sample_id": [ "GSM6767", "GSM6770", "GSM6771", "GSM6772", "GSM6776" ], "type": "disease state", "id": "GDS358_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS358", "version": 1.0, "instances": "11", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS358.tab", "compression": "gz" } ], [ [ "GDS3580.tab" ], { "title": "Pulmonary sarcoidosis", "description": "Analysis of lungs from patients with pulmonary sarcoidosis (PS). PS is characterized by the granulomatous inflammation of the lung. Results provide insight into the molecular pathogenesis of PS.", "type": "Expression profiling by array", "pubmed_id": "19218196", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE16538", "order": "none", "update_date": "Nov 10 2009", "subsets": [ { "dataset_id": "GDS3580", "description": "normal", "sample_id": [ "GSM415386", "GSM415387", "GSM415388", "GSM415389", "GSM415390", "GSM415391" ], "type": "disease state", "id": "GDS3580_1" }, { "dataset_id": "GDS3580", "description": "sarcoidosis", "sample_id": [ "GSM415392", "GSM415393", "GSM415394", "GSM415395", "GSM415396", "GSM415397" ], "type": "disease state", "id": "GDS3580_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3580", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3580.tab", "compression": "gz" } ], [ [ "GDS3581.tab" ], { "title": "Anti-mitotic compound MT7 effect on immortalized cell line: time course", "description": "Analysis of HeLa cells treated for up to 12 hrs with MT7, an anti-mitotic compound from a combinatorial library. MT7 inhibits cell proliferation by arresting mitosis specifically and reversibly in various tumor cell lines of human origin. Results provide insight into the mechanism of action of MT7.", "type": "Expression profiling by array", "pubmed_id": "19705064", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE16378", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3581", "description": "untreated", "sample_id": [ "GSM410912" ], "type": "agent", "id": "GDS3581_1" }, { "dataset_id": "GDS3581", "description": "MT7", "sample_id": [ "GSM410913", "GSM410914", "GSM410915", "GSM410916" ], "type": "agent", "id": "GDS3581_2" }, { "dataset_id": "GDS3581", "description": "control", "sample_id": [ "GSM410912" ], "type": "time", "id": "GDS3581_3" }, { "dataset_id": "GDS3581", "description": "1.5 h", "sample_id": [ "GSM410913" ], "type": "time", "id": "GDS3581_4" }, { "dataset_id": "GDS3581", "description": "3 h", "sample_id": [ "GSM410914" ], "type": "time", "id": "GDS3581_5" }, { "dataset_id": "GDS3581", "description": "6 h", "sample_id": [ "GSM410915" ], "type": "time", "id": "GDS3581_6" }, { "dataset_id": "GDS3581", "description": "12 h", "sample_id": [ "GSM410916" ], "type": "time", "id": "GDS3581_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3581", "version": 1.0, "instances": "5", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3581.tab", "compression": "gz" } ], [ [ "GDS3582.tab" ], { "title": "PTEN heterozygosity effect on Smoothened-active mouse model", "description": "Analysis of medulloblastoma (MB) tumors from mice heterozygous for PTEN. SmoA1 +; Pten +/- mice exhibited decreased survival, an increased incidence, and a shorter time to onset of symptoms, compared to SmoA1 +; Pten +/+ mice. Results provide insight into the role of PTEN in the pathogenesis of MB.", "type": "Expression profiling by array", "pubmed_id": "20520772", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE19059", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3582", "description": "wildtype pten", "sample_id": [ "GSM471648", "GSM471650", "GSM471651", "GSM471653" ], "type": "genotype/variation", "id": "GDS3582_1" }, { "dataset_id": "GDS3582", "description": "heterozygous pten", "sample_id": [ "GSM471652", "GSM471654", "GSM471655", "GSM471656", "GSM471657", "GSM471658", "GSM471659", "GSM471660" ], "type": "genotype/variation", "id": "GDS3582_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS3582", "version": 1.0, "instances": "12", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3582.tab", "compression": "gz" } ], [ [ "GDS3583.tab" ], { "title": "GR24 effect on strigolactone-deficient mutant seedlings", "description": "Analysis of ecotype Columbia, strigolactone (SL)-deficient mutant seedlings treated with GR24 (1uM), a synthetic SL analog. SLs regulate shoot branching. Results provide insight into the molecular mechanisms underlying SL signaling.", "type": "Expression profiling by array", "pubmed_id": "19897913", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE19661", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3583", "description": "DMSO", "sample_id": [ "GSM490338", "GSM490339" ], "type": "agent", "id": "GDS3583_1" }, { "dataset_id": "GDS3583", "description": "GR24", "sample_id": [ "GSM490340", "GSM490341" ], "type": "agent", "id": "GDS3583_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3583", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3583.tab", "compression": "gz" } ], [ [ "GDS359.tab" ], { "title": "Glaucoma and aqueous humor outflow", "description": "Glaucoma study investigating molecular basis of increase in aqueous humor outflow when human ciliary muscle or human trabecular meshwork cells are treated with prostaglandin analogs latanoprost free acid or prostaglandin F2alpha.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE492", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS359", "description": "control", "sample_id": [ "GSM7621", "GSM7622", "GSM7623", "GSM7624" ], "type": "agent", "id": "GDS359_1" }, { "dataset_id": "GDS359", "description": "latanoprost free acid", "sample_id": [ "GSM6681", "GSM6682", "GSM6683", "GSM6684" ], "type": "agent", "id": "GDS359_2" }, { "dataset_id": "GDS359", "description": "prostaglandin F2alpha", "sample_id": [ "GSM6685", "GSM6686", "GSM6687", "GSM6688" ], "type": "agent", "id": "GDS359_3" }, { "dataset_id": "GDS359", "description": "ciliary muscle", "sample_id": [ "GSM6681", "GSM6682", "GSM6685", "GSM6686", "GSM7621", "GSM7622" ], "type": "cell type", "id": "GDS359_4" }, { "dataset_id": "GDS359", "description": "trabecular meshwork", "sample_id": [ "GSM6683", "GSM6684", "GSM6687", "GSM6688", "GSM7623", "GSM7624" ], "type": "cell type", "id": "GDS359_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS359", "version": 1.0, "instances": "12", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS359.tab", "compression": "gz" } ], [ [ "GDS3591.tab" ], { "title": "Quinine effect on yeast eukaryotic model", "description": "Analysis of Saccharomyces cerevisiae cells subjected to anti-malaria drug quinine (QN) at concentration that exerted a very slight effect on cellular growth. Results provide insight into the molecular mechanisms underlying QN action and the host response to the drug.", "type": "Expression profiling by array", "pubmed_id": "19805573", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE18037", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3591", "description": "control", "sample_id": [ "GSM451048", "GSM451049" ], "type": "agent", "id": "GDS3591_1" }, { "dataset_id": "GDS3591", "description": "quinine", "sample_id": [ "GSM451050", "GSM451051" ], "type": "agent", "id": "GDS3591_2" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS3591", "version": 1.0, "instances": "4", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3591.tab", "compression": "gz" } ], [ [ "GDS3592.tab" ], { "title": "Ovarian normal surface epithelia and ovarian cancer epithelial cells", "description": "Comparison of normal ovarian surface epithelia (OSE) and ovarian cancer epithelial cells (CEPIs). CEPIs were isolated by laser capture microdissection from serous papillary ovarian adenocarcinomas. Results provide insight into the role of OSE in the development of ovarian adenocarcinoma.", "type": "Expression profiling by array", "pubmed_id": "20040092", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE14407", "order": "none", "update_date": "Jan 05 2010", "subsets": [ { "dataset_id": "GDS3592", "description": "normal", "sample_id": [ "GSM359972", "GSM359973", "GSM359974", "GSM359975", "GSM359976", "GSM359977", "GSM359978", "GSM359979", "GSM359980", "GSM359981", "GSM359982", "GSM359983" ], "type": "disease state", "id": "GDS3592_1" }, { "dataset_id": "GDS3592", "description": "ovarian adenocarcinoma", "sample_id": [ "GSM359984", "GSM360039", "GSM360040", "GSM360041", "GSM360042", "GSM360043", "GSM360044", "GSM360045", "GSM360046", "GSM360047", "GSM360048", "GSM360049" ], "type": "disease state", "id": "GDS3592_2" }, { "dataset_id": "GDS3592", "description": "ovarian surface epithelia", "sample_id": [ "GSM359972", "GSM359973", "GSM359974", "GSM359975", "GSM359976", "GSM359977", "GSM359978", "GSM359979", "GSM359980", "GSM359981", "GSM359982", "GSM359983" ], "type": "specimen", "id": "GDS3592_3" }, { "dataset_id": "GDS3592", "description": "ovarian cancer epithelial cells", "sample_id": [ "GSM359984", "GSM360039", "GSM360040", "GSM360041", "GSM360042", "GSM360043", "GSM360044", "GSM360045", "GSM360046", "GSM360047", "GSM360048", "GSM360049" ], "type": "specimen", "id": "GDS3592_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3592", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3592.tab", "compression": "gz" } ], [ [ "GDS3593.tab" ], { "title": "Heat-shocked embryonic fibroblast response to lipopolysaccharide", "description": "Analysis of embryonic fibroblasts subjected to heat shock and then treated with lipolysaccharide (LPS). LPS induces the expression of inflammatory genes. Results provide insight into the mechanisms underlying the fever-mediated suppression of inflammatory gene expression.", "type": "Expression profiling by array", "pubmed_id": "20018623", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE16266", "order": "none", "update_date": "Jan 05 2010", "subsets": [ { "dataset_id": "GDS3593", "description": "untreated", "sample_id": [ "GSM409451", "GSM409454" ], "type": "agent", "id": "GDS3593_1" }, { "dataset_id": "GDS3593", "description": "LPS alone", "sample_id": [ "GSM409452", "GSM409455" ], "type": "agent", "id": "GDS3593_2" }, { "dataset_id": "GDS3593", "description": "LPS and Heat Shock", "sample_id": [ "GSM409453", "GSM409456" ], "type": "agent", "id": "GDS3593_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3593", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3593.tab", "compression": "gz" } ], [ [ "GDS3595.tab" ], { "title": "Macrophage response to H1N1 and H5N1 influenza viral infections", "description": "Analysis of macrophages at 1, 3, and 6 hours post-infection with H1N1 or H5N1 viruses in vitro. The avian H5N1 virus is highly pathogenic, while the swine H1N1 virus is less so. Alveolar macrophages are targets of H5N1. Results provide insight into the host response to H1N1 and H5N1 infections.", "type": "Expression profiling by array", "pubmed_id": "20011590", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE18816", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3595", "description": "donor 1", "sample_id": [ "GSM466570", "GSM466571", "GSM466572", "GSM466573", "GSM466574", "GSM466575", "GSM466576", "GSM466577", "GSM466578" ], "type": "individual", "id": "GDS3595_1" }, { "dataset_id": "GDS3595", "description": "donor 2", "sample_id": [ "GSM466579", "GSM466580", "GSM466581", "GSM466582", "GSM466583", "GSM466584", "GSM466585", "GSM466586", "GSM466587" ], "type": "individual", "id": "GDS3595_2" }, { "dataset_id": "GDS3595", "description": "donor 3", "sample_id": [ "GSM466588", "GSM466589", "GSM466590", "GSM466591", "GSM466592", "GSM466593", "GSM466594", "GSM466595", "GSM466596" ], "type": "individual", "id": "GDS3595_3" }, { "dataset_id": "GDS3595", "description": "mock", "sample_id": [ "GSM466570", "GSM466573", "GSM466576", "GSM466579", "GSM466582", "GSM466585", "GSM466588", "GSM466591", "GSM466594" ], "type": "infection", "id": "GDS3595_4" }, { "dataset_id": "GDS3595", "description": "H1N1", "sample_id": [ "GSM466571", "GSM466574", "GSM466577", "GSM466580", "GSM466583", "GSM466586", "GSM466589", "GSM466592", "GSM466595" ], "type": "infection", "id": "GDS3595_5" }, { "dataset_id": "GDS3595", "description": "H5N1", "sample_id": [ "GSM466572", "GSM466575", "GSM466578", "GSM466581", "GSM466584", "GSM466587", "GSM466590", "GSM466593", "GSM466596" ], "type": "infection", "id": "GDS3595_6" }, { "dataset_id": "GDS3595", "description": "1 h", "sample_id": [ "GSM466570", "GSM466571", "GSM466572", "GSM466579", "GSM466580", "GSM466581", "GSM466588", "GSM466589", "GSM466590" ], "type": "time", "id": "GDS3595_7" }, { "dataset_id": "GDS3595", "description": "3 h", "sample_id": [ "GSM466573", "GSM466574", "GSM466575", "GSM466582", "GSM466583", "GSM466584", "GSM466591", "GSM466592", "GSM466593" ], "type": "time", "id": "GDS3595_8" }, { "dataset_id": "GDS3595", "description": "6 h", "sample_id": [ "GSM466576", "GSM466577", "GSM466578", "GSM466585", "GSM466586", "GSM466587", "GSM466594", "GSM466595", "GSM466596" ], "type": "time", "id": "GDS3595_9" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3595", "version": 1.0, "instances": "27", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3595.tab", "compression": "gz" } ], [ [ "GDS3596.tab" ], { "title": "Isoproterenol-induced cardiomyopathy and exercise-induced cardiac hypertrophy", "description": "Comparison of hearts of C57BL/6 males with isoproterenol-induced cardiomyopathy to those with exercise-induced cardiac hypertrophy. Results provide insight into the molecular differences between pathological and physiological cardiac hypertrophy models.", "type": "Expression profiling by array", "pubmed_id": "20003209", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE18801", "order": "none", "update_date": "Jan 06 2010", "subsets": [ { "dataset_id": "GDS3596", "description": "control", "sample_id": [ "GSM466341", "GSM466348", "GSM466349" ], "type": "protocol", "id": "GDS3596_1" }, { "dataset_id": "GDS3596", "description": "isoproterenol-induced cardiomyopathy", "sample_id": [ "GSM466350", "GSM466351", "GSM466394" ], "type": "protocol", "id": "GDS3596_2" }, { "dataset_id": "GDS3596", "description": "exercise-induced cardiac hypertrophy", "sample_id": [ "GSM466399", "GSM466400", "GSM466401" ], "type": "protocol", "id": "GDS3596_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3596", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3596.tab", "compression": "gz" } ], [ [ "GDS3597.tab" ], { "title": "Increased cell membrane saturated fatty acid effect on Escherichia coli", "description": "Analysis of Escherichia coli cells treated with CHIR-090, an inhibitor of lipid A bioynthesis, to increase the ratio of saturated to unsaturated fatty acids (SFA:UFA) in the cell membrane. Results provide insight into molecular mechanisms regulating membrane lipid homeostasis in E. coli.", "type": "Expression profiling by array", "pubmed_id": "19854834", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE18623", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3597", "description": "control", "sample_id": [ "GSM462878", "GSM462879", "GSM462880" ], "type": "agent", "id": "GDS3597_1" }, { "dataset_id": "GDS3597", "description": "CHIR-090", "sample_id": [ "GSM462881", "GSM462882", "GSM462883" ], "type": "agent", "id": "GDS3597_2" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS3597", "version": 1.0, "instances": "6", "variables": 8805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3597.tab", "compression": "gz" } ], [ [ "GDS3598.tab" ], { "title": "p300 genetic reduction model of Rubinstein-Taybi syndrome: hippocampus", "description": "Analysis of hippocampi from heterozygous p300 deletion animals. A small percentage of cases of Rubinstein-Taybi syndrome (RSTS) is caused by p300 mutations. Results provide insight in the contribution of p300 to RSTS pathoetiology.", "type": "Expression profiling by array", "pubmed_id": "19822209", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE18383", "order": "none", "update_date": "Jan 06 2010", "subsets": [ { "dataset_id": "GDS3598", "description": "p300 +/-", "sample_id": [ "GSM458547", "GSM458548", "GSM458549" ], "type": "genotype/variation", "id": "GDS3598_1" }, { "dataset_id": "GDS3598", "description": "wild-type", "sample_id": [ "GSM458550", "GSM458551", "GSM458552" ], "type": "genotype/variation", "id": "GDS3598_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3598", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3598.tab", "compression": "gz" } ], [ [ "GDS3599.tab" ], { "title": "Eset depletion effect on embryonic stem cell", "description": "Analysis of embryonic stem (ES) cells following shRNA knock-down of Eset. Eset is a histone H3 lysine 9 (H3K9) methyltransferase critical for development of the inner cell mass (ICM) from which ES cells are derived. Results provide insight into the role of Eset in ES cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "19884257", "platform": "GPL6333", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46120", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE17439", "order": "none", "update_date": "Mar 24 2010", "subsets": [ { "dataset_id": "GDS3599", "description": "control", "sample_id": [ "GSM435059", "GSM435060", "GSM435061" ], "type": "protocol", "id": "GDS3599_1" }, { "dataset_id": "GDS3599", "description": "Eset depletion", "sample_id": [ "GSM435062", "GSM435063", "GSM435064" ], "type": "protocol", "id": "GDS3599_2" } ], "taxid": "10090", "genes": 31032, "aggregation_function": "mean", "name": "GDS3599", "version": 1.0, "instances": "6", "variables": 31034, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3599.tab", "compression": "gz" } ], [ [ "GDS36.tab" ], { "title": "Heat shock from 29\u00b0C to 33\u00b0C time course", "description": "Heat shock from 29\u00b0C to 33\u00b0C. Samples collected at 5, 15, 30 and 90 minutes. Included as part of a detailed characterization of global expression programs triggered by environmental stress.", "type": "Expression profiling by array", "pubmed_id": "11102521", "platform": "GPL56", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8448", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE18", "order": "ordered", "update_date": "Nov 03 2005", "subsets": [ { "dataset_id": "GDS36", "description": "5 minute", "sample_id": [ "GSM918" ], "type": "time", "id": "GDS36_1" }, { "dataset_id": "GDS36", "description": "15 minute", "sample_id": [ "GSM919" ], "type": "time", "id": "GDS36_2" }, { "dataset_id": "GDS36", "description": "30 minute", "sample_id": [ "GSM932" ], "type": "time", "id": "GDS36_3" }, { "dataset_id": "GDS36", "description": "90 minute", "sample_id": [ "GSM933" ], "type": "time", "id": "GDS36_4" } ], "taxid": "4932", "genes": 6375, "aggregation_function": "mean", "name": "GDS36", "version": 1.0, "instances": "4", "variables": 6377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS36.tab", "compression": "gz" } ], [ [ "GDS360.tab" ], { "title": "Breast cancer and docetaxel treatment", "description": "Breast cancer core biopsies taken from patients found to be resistant (greater than 25% residual tumor volume) or sensitive (less than 25% residual tumor volume) to docetaxel treatment.", "type": "Expression profiling by array", "pubmed_id": "15718313", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE6434", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS360", "description": "docetaxel resistant tumor", "sample_id": [ "GSM4901", "GSM4902", "GSM4904", "GSM4905", "GSM4906", "GSM4909", "GSM4910", "GSM4911", "GSM4912", "GSM4913", "GSM4916", "GSM4918", "GSM4922", "GSM4924" ], "type": "disease state", "id": "GDS360_1" }, { "dataset_id": "GDS360", "description": "docetaxel sensitive tumor", "sample_id": [ "GSM4903", "GSM4907", "GSM4908", "GSM4914", "GSM4915", "GSM4917", "GSM4919", "GSM4920", "GSM4921", "GSM4923" ], "type": "disease state", "id": "GDS360_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS360", "version": 1.0, "instances": "24", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS360.tab", "compression": "gz" } ], [ [ "GDS3600.tab" ], { "title": "Endothelial cell response to estradiol in vitro", "description": "Analysis of cultured umbilical vein endothelial cells treated with 1 nmol/L estradiol for 24 hours. The incidence of coronary heart disease in women increases after menopause. Results provide insight into the response of the cardiovascular system to estrogens at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "20011585", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE16683", "order": "none", "update_date": "Jan 06 2010", "subsets": [ { "dataset_id": "GDS3600", "description": "control", "sample_id": [ "GSM418126", "GSM418127", "GSM418128" ], "type": "agent", "id": "GDS3600_1" }, { "dataset_id": "GDS3600", "description": "estradiol", "sample_id": [ "GSM418129", "GSM418130", "GSM418131" ], "type": "agent", "id": "GDS3600_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3600", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3600.tab", "compression": "gz" } ], [ [ "GDS3601.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95A)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 4 male and 5 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "Jan 08 2010", "subsets": [ { "dataset_id": "GDS3601", "description": "lean", "sample_id": [ "GSM47224", "GSM47225", "GSM47226", "GSM47227", "GSM47228", "GSM47234", "GSM47235", "GSM47242", "GSM47256", "GSM47269" ], "type": "disease state", "id": "GDS3601_1" }, { "dataset_id": "GDS3601", "description": "obese", "sample_id": [ "GSM47317", "GSM47319", "GSM47321", "GSM47322", "GSM47323", "GSM47329", "GSM47330", "GSM47331", "GSM47332" ], "type": "disease state", "id": "GDS3601_2" }, { "dataset_id": "GDS3601", "description": "male", "sample_id": [ "GSM47234", "GSM47235", "GSM47242", "GSM47256", "GSM47269", "GSM47329", "GSM47330", "GSM47331", "GSM47332" ], "type": "gender", "id": "GDS3601_3" }, { "dataset_id": "GDS3601", "description": "female", "sample_id": [ "GSM47224", "GSM47225", "GSM47226", "GSM47227", "GSM47228", "GSM47317", "GSM47319", "GSM47321", "GSM47322", "GSM47323" ], "type": "gender", "id": "GDS3601_4" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS3601", "version": 1.0, "instances": "19", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3601.tab", "compression": "gz" } ], [ [ "GDS3602.tab" ], { "title": "Obesity: adipocyte expression profile (HG-U95Av2)", "description": "Analysis of cultured abdominal subcutaneous mature adipocytes from 5 male and 5 female non-diabetic obese Pima Indians. The prevalence of obesity in Pima Indians is among the highest of any population. Results provide insight into the role of adipocytes in obesity and obesity-related inflammation.", "type": "Expression profiling by array", "pubmed_id": "16059715", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE2508", "order": "none", "update_date": "Jan 08 2010", "subsets": [ { "dataset_id": "GDS3602", "description": "lean", "sample_id": [ "GSM47229", "GSM47230", "GSM47231", "GSM47232", "GSM47233", "GSM47286", "GSM47299", "GSM47300", "GSM47301", "GSM47303" ], "type": "disease state", "id": "GDS3602_1" }, { "dataset_id": "GDS3602", "description": "obese", "sample_id": [ "GSM47324", "GSM47325", "GSM47326", "GSM47327", "GSM47328", "GSM47333", "GSM47334", "GSM47335", "GSM47336", "GSM47337" ], "type": "disease state", "id": "GDS3602_2" }, { "dataset_id": "GDS3602", "description": "male", "sample_id": [ "GSM47286", "GSM47299", "GSM47300", "GSM47301", "GSM47303", "GSM47333", "GSM47334", "GSM47335", "GSM47336", "GSM47337" ], "type": "gender", "id": "GDS3602_3" }, { "dataset_id": "GDS3602", "description": "female", "sample_id": [ "GSM47229", "GSM47230", "GSM47231", "GSM47232", "GSM47233", "GSM47324", "GSM47325", "GSM47326", "GSM47327", "GSM47328" ], "type": "gender", "id": "GDS3602_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3602", "version": 1.0, "instances": "20", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3602.tab", "compression": "gz" } ], [ [ "GDS3603.tab" ], { "title": "Renal cancer response to rapamycin analog CCI-779 treatment: time course", "description": "Expression profiling of peripheral blood mononuclear cells (PBMC) from patients with advanced renal cancer following treatment with the rapamycin analog CCI-779. Gene expression examined 8 and 16 weeks after treatment. Results identify potential gene markers of CCI-779 exposure.", "type": "Expression profiling by array", "pubmed_id": "15637533", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "count", "reference_series": "GSE1982", "order": "none", "update_date": "Oct 05 2012", "subsets": [ { "dataset_id": "GDS3603", "description": "0 wk", "sample_id": [ "GSM35527", "GSM35455", "GSM35449", "GSM35461", "GSM35532", "GSM35497", "GSM35519", "GSM35475", "GSM35512", "GSM35511", "GSM35496", "GSM35508", "GSM35472", "GSM35460", "GSM35446", "GSM35463", "GSM35483", "GSM35504", "GSM35441", "GSM35515", "GSM35458" ], "type": "time", "id": "GDS3603_1" }, { "dataset_id": "GDS3603", "description": "8 wk", "sample_id": [ "GSM35439", "GSM35443", "GSM35445", "GSM35448", "GSM35451", "GSM35454", "GSM35457", "GSM35465", "GSM35468", "GSM35471", "GSM35473", "GSM35477", "GSM35480", "GSM35482", "GSM35485", "GSM35489", "GSM35492", "GSM35495", "GSM35499", "GSM35502", "GSM35505", "GSM35507", "GSM35510", "GSM35514", "GSM35517", "GSM35520", "GSM35523", "GSM35529", "GSM35531", "GSM35534", "GSM35536", "GSM35538", "GSM35539", "GSM35540", "GSM35541" ], "type": "time", "id": "GDS3603_2" }, { "dataset_id": "GDS3603", "description": "16 wk", "sample_id": [ "GSM35442", "GSM35447", "GSM35450", "GSM35453", "GSM35456", "GSM35464", "GSM35467", "GSM35470", "GSM35479", "GSM35484", "GSM35488", "GSM35491", "GSM35494", "GSM35498", "GSM35501", "GSM35509", "GSM35513", "GSM35516", "GSM35522", "GSM35525", "GSM35528", "GSM35533", "GSM35537" ], "type": "time", "id": "GDS3603_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3603", "version": 1.0, "instances": "79", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3603.tab", "compression": "gz" } ], [ [ "GDS3604.tab" ], { "title": "Tamoxifen effect on endometrioid carcinomas", "description": "Analysis of endometrial epithelial cells from stage I or II endometrioid carcinomas after treatment with oestrogen or tamoxifen (TMX). Results provide insight into the molecular basis of the association of TMX treatment of breast cancer with an increased incidence of endometrial cancer.", "type": "Expression profiling by array", "pubmed_id": "16355216", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE3013", "order": "none", "update_date": "Jun 21 2010", "subsets": [ { "dataset_id": "GDS3604", "description": "stage I endometrioid carcinoma", "sample_id": [ "GSM65277", "GSM65279", "GSM65281" ], "type": "disease state", "id": "GDS3604_1" }, { "dataset_id": "GDS3604", "description": "stage II endometrioid carcinoma", "sample_id": [ "GSM65283", "GSM65284", "GSM65285", "GSM65287" ], "type": "disease state", "id": "GDS3604_2" }, { "dataset_id": "GDS3604", "description": "control", "sample_id": [ "GSM65277", "GSM65283" ], "type": "agent", "id": "GDS3604_3" }, { "dataset_id": "GDS3604", "description": "oestrogen", "sample_id": [ "GSM65279", "GSM65284", "GSM65285" ], "type": "agent", "id": "GDS3604_4" }, { "dataset_id": "GDS3604", "description": "tamoxifen", "sample_id": [ "GSM65281", "GSM65287" ], "type": "agent", "id": "GDS3604_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3604", "version": 1.0, "instances": "7", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3604.tab", "compression": "gz" } ], [ [ "GDS3605.tab" ], { "title": "Spared nerve injury model of peripheral neuropathic pain: dorsal horn of spinal cord", "description": "Analysis of adult and neonatal dorsal horns of spinal cords 7 days after spared nerve injury (SNI). SNI is a model for neuropathic pain (NP). Partial peripheral nerve injury in adults result in NP-like hypersensitivity, but not in neonates. Results provide insight into the molecular basis of NP.", "type": "Expression profiling by array", "pubmed_id": "19923276", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE18803", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3605", "description": "neonate", "sample_id": [ "GSM466420", "GSM466421", "GSM466422", "GSM466423", "GSM466424", "GSM466425", "GSM466426", "GSM466427", "GSM466428", "GSM466429", "GSM466430", "GSM466431" ], "type": "development stage", "id": "GDS3605_1" }, { "dataset_id": "GDS3605", "description": "adult", "sample_id": [ "GSM466408", "GSM466409", "GSM466410", "GSM466411", "GSM466412", "GSM466413", "GSM466414", "GSM466415", "GSM466416", "GSM466417", "GSM466418", "GSM466419" ], "type": "development stage", "id": "GDS3605_2" }, { "dataset_id": "GDS3605", "description": "control", "sample_id": [ "GSM466408", "GSM466409", "GSM466410", "GSM466411", "GSM466412", "GSM466413", "GSM466420", "GSM466421", "GSM466422", "GSM466423", "GSM466424", "GSM466425" ], "type": "protocol", "id": "GDS3605_3" }, { "dataset_id": "GDS3605", "description": "spared nerve injury", "sample_id": [ "GSM466414", "GSM466415", "GSM466416", "GSM466417", "GSM466418", "GSM466419", "GSM466426", "GSM466427", "GSM466428", "GSM466429", "GSM466430", "GSM466431" ], "type": "protocol", "id": "GDS3605_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3605", "version": 1.0, "instances": "24", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3605.tab", "compression": "gz" } ], [ [ "GDS3606.tab" ], { "title": "Myeloid leukemia cell response to thrombopoietin receptor agonist SB-559457 in vitro", "description": "Analysis of primary cultured myeloid leukemia cells treated with recombinant human thrombopoietin or the thrombopoietin receptor agonist SB-559457 (SB). SB is toxic to leukemia cells. Results provide insight into the mechanism of action of SB.", "type": "Expression profiling by array", "pubmed_id": "19880492", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE18673", "order": "none", "update_date": "Jan 12 2010", "subsets": [ { "dataset_id": "GDS3606", "description": "patient 1", "sample_id": [ "GSM463910", "GSM463911" ], "type": "individual", "id": "GDS3606_1" }, { "dataset_id": "GDS3606", "description": "patient 2", "sample_id": [ "GSM463912", "GSM463913" ], "type": "individual", "id": "GDS3606_2" }, { "dataset_id": "GDS3606", "description": "patient 3", "sample_id": [ "GSM463914", "GSM463915" ], "type": "individual", "id": "GDS3606_3" }, { "dataset_id": "GDS3606", "description": "patient 4", "sample_id": [ "GSM463916", "GSM463917" ], "type": "individual", "id": "GDS3606_4" }, { "dataset_id": "GDS3606", "description": "patient 5", "sample_id": [ "GSM463918", "GSM463919" ], "type": "individual", "id": "GDS3606_5" }, { "dataset_id": "GDS3606", "description": "rhTpo", "sample_id": [ "GSM463919", "GSM463911", "GSM463913", "GSM463915", "GSM463917" ], "type": "agent", "id": "GDS3606_6" }, { "dataset_id": "GDS3606", "description": "SB-559457", "sample_id": [ "GSM463910", "GSM463912", "GSM463914", "GSM463916", "GSM463918" ], "type": "agent", "id": "GDS3606_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3606", "version": 1.0, "instances": "10", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3606.tab", "compression": "gz" } ], [ [ "GDS3607.tab" ], { "title": "Egr-1 deficiency effect on retina during eye development", "description": "Analysis of retinas of Egr-1 deficient animals at post-natal days 30 and 42. 42 day-old Egr-1 knockout animals have longer eyes and a more myopic refractive error compared to wild-types. Results provide insight into the molecular mechanisms regulating axial eye growth.", "type": "Expression profiling by array", "pubmed_id": "20019881", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE16974", "order": "none", "update_date": "Jan 12 2010", "subsets": [ { "dataset_id": "GDS3607", "description": "30 d", "sample_id": [ "GSM424879", "GSM424880", "GSM424881", "GSM424882", "GSM424883", "GSM424884", "GSM424885", "GSM424886" ], "type": "age", "id": "GDS3607_1" }, { "dataset_id": "GDS3607", "description": "42 d", "sample_id": [ "GSM424887", "GSM424888", "GSM424889", "GSM424890", "GSM424891", "GSM424892", "GSM424893", "GSM424894" ], "type": "age", "id": "GDS3607_2" }, { "dataset_id": "GDS3607", "description": "wild-type", "sample_id": [ "GSM424879", "GSM424880", "GSM424881", "GSM424882", "GSM424887", "GSM424888", "GSM424889", "GSM424890" ], "type": "genotype/variation", "id": "GDS3607_3" }, { "dataset_id": "GDS3607", "description": "Egr-1 null", "sample_id": [ "GSM424883", "GSM424884", "GSM424885", "GSM424886", "GSM424891", "GSM424892", "GSM424893", "GSM424894" ], "type": "genotype/variation", "id": "GDS3607_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3607", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3607.tab", "compression": "gz" } ], [ [ "GDS3608.tab" ], { "title": "Liver response to perinatal exposure to 2,2',4,4'-tetrabromodiphenyl ether: dose response", "description": "Analysis of livers of animals exposed to low doses of 2,2',4,4'-tetrabromodiphenyl ether (BDE-47) from gestational day 15 to post-natal day 20. Polybrominated diphenyl ethers are flame-retardant chemicals used in consumer products. Results provide insight into the mechanisms of toxicity of BDE-47.", "type": "Expression profiling by array", "pubmed_id": "20056577", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE19868", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3608", "description": "vehicle", "sample_id": [ "GSM496404", "GSM496405", "GSM496406", "GSM496407", "GSM496408", "GSM496409" ], "type": "agent", "id": "GDS3608_1" }, { "dataset_id": "GDS3608", "description": "BDE-47", "sample_id": [ "GSM496410", "GSM496411", "GSM496412", "GSM496413", "GSM496414", "GSM496415", "GSM496416", "GSM496417", "GSM496418", "GSM496419", "GSM496420", "GSM496421" ], "type": "agent", "id": "GDS3608_2" }, { "dataset_id": "GDS3608", "description": "control", "sample_id": [ "GSM496404", "GSM496405", "GSM496406", "GSM496407", "GSM496408", "GSM496409" ], "type": "dose", "id": "GDS3608_3" }, { "dataset_id": "GDS3608", "description": "0.002 mg/kg", "sample_id": [ "GSM496410", "GSM496411", "GSM496412", "GSM496413", "GSM496414", "GSM496415" ], "type": "dose", "id": "GDS3608_4" }, { "dataset_id": "GDS3608", "description": "0.2 mg/kg", "sample_id": [ "GSM496416", "GSM496417", "GSM496418", "GSM496419", "GSM496420", "GSM496421" ], "type": "dose", "id": "GDS3608_5" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS3608", "version": 1.0, "instances": "18", "variables": 22036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3608.tab", "compression": "gz" } ], [ [ "GDS3609.tab" ], { "title": "Syk depletion effect on breast epithelial cell line", "description": "Analysis of MCF10A breast epithelial cells depleted for Syk. Progressive loss of Syk mRNA occurs during breast tumor development. Results provide insight into Syk\u2019s tumor suppressor function and role in normal breast development.", "type": "Expression profiling by array", "pubmed_id": "19829710", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE16200", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3609", "description": "siRNA-mediated Syk knockdown", "sample_id": [ "GSM406566", "GSM406567", "GSM406568", "GSM406569", "GSM406570", "GSM406571" ], "type": "protocol", "id": "GDS3609_1" }, { "dataset_id": "GDS3609", "description": "control", "sample_id": [ "GSM406560", "GSM406561", "GSM406562", "GSM406563", "GSM406564", "GSM406565" ], "type": "protocol", "id": "GDS3609_2" }, { "dataset_id": "GDS3609", "description": "collagen gel", "sample_id": [ "GSM406560", "GSM406562", "GSM406564", "GSM406566", "GSM406568", "GSM406570" ], "type": "growth protocol", "id": "GDS3609_3" }, { "dataset_id": "GDS3609", "description": "no collagen gel", "sample_id": [ "GSM406561", "GSM406563", "GSM406565", "GSM406567", "GSM406569", "GSM406571" ], "type": "growth protocol", "id": "GDS3609_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3609", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3609.tab", "compression": "gz" } ], [ [ "GDS3610.tab" ], { "title": "Nasopharyngeal carcinoma", "description": "Analysis of biopsies from patients with Epstein-Barr virus (EBV)-positive undifferentiated nasopharyngeal carcinoma (NPC). NPC is a common cancer in China and Southeast Asia. Results provide insight into the molecular pathogenesis of NPC.", "type": "Expression profiling by array", "pubmed_id": "19142888", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE13597", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3610", "description": "control", "sample_id": [ "GSM342152", "GSM342153", "GSM342154" ], "type": "disease state", "id": "GDS3610_1" }, { "dataset_id": "GDS3610", "description": "nasopharyngeal carcinoma", "sample_id": [ "GSM342155", "GSM342156", "GSM342157", "GSM342158", "GSM342159", "GSM342160", "GSM342161", "GSM342162", "GSM342163", "GSM342164", "GSM342165", "GSM342166", "GSM342167", "GSM342168", "GSM342169", "GSM342170", "GSM342171", "GSM342172", "GSM342173", "GSM342174", "GSM342175", "GSM342176", "GSM342177", "GSM342178", "GSM342179" ], "type": "disease state", "id": "GDS3610_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3610", "version": 1.0, "instances": "28", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3610.tab", "compression": "gz" } ], [ [ "GDS3612.tab" ], { "title": "Claudin16 deficiency effect on kidneys", "description": "Analysis of kidneys from animals deficient for Claudin16. Mutations in Caludin16 are associated with renal Ca2+ and Mg2+ wasting, nephrocalcinosis and progressive renal insufficiency in humans. Results provide insight into the role of Caludin16 in Ca2+ and Mg2+ homeostasis.", "type": "Expression profiling by array", "pubmed_id": "20147368", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE19961", "order": "none", "update_date": "Feb 23 2010", "subsets": [ { "dataset_id": "GDS3612", "description": "wild-type", "sample_id": [ "GSM498687", "GSM498688", "GSM498689", "GSM498690" ], "type": "genotype/variation", "id": "GDS3612_1" }, { "dataset_id": "GDS3612", "description": "heterozygous Claudin16 null", "sample_id": [ "GSM498691", "GSM498692", "GSM498693" ], "type": "genotype/variation", "id": "GDS3612_2" }, { "dataset_id": "GDS3612", "description": "homozygous Claudin16 null", "sample_id": [ "GSM498694", "GSM498695", "GSM498696", "GSM498697" ], "type": "genotype/variation", "id": "GDS3612_3" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS3612", "version": 1.0, "instances": "11", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3612.tab", "compression": "gz" } ], [ [ "GDS3613.tab" ], { "title": "Luteolin effect on pro-inflammatory challenged microglial cell line", "description": "Analysis of lipopolysaccharide-activated microglial BV-2 cells treated with luteolin, a plant derived flavonoid. Luteolin possesses the ability to scavenge oxygen and nitrogen species, and exhibits anti-inflammatory activities. Results provide insight into the immuno-modulatory effects of luteolin.", "type": "Expression profiling by array", "pubmed_id": "20074346", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE18740", "order": "none", "update_date": "Feb 23 2010", "subsets": [ { "dataset_id": "GDS3613", "description": "control", "sample_id": [ "GSM465440", "GSM465441", "GSM465442" ], "type": "agent", "id": "GDS3613_1" }, { "dataset_id": "GDS3613", "description": "luteolin", "sample_id": [ "GSM465443", "GSM465444", "GSM465445" ], "type": "agent", "id": "GDS3613_2" }, { "dataset_id": "GDS3613", "description": "LPS", "sample_id": [ "GSM465446", "GSM465447", "GSM465448" ], "type": "agent", "id": "GDS3613_3" }, { "dataset_id": "GDS3613", "description": "LPS and luteolin", "sample_id": [ "GSM465449", "GSM465450", "GSM465451" ], "type": "agent", "id": "GDS3613_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3613", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3613.tab", "compression": "gz" } ], [ [ "GDS3615.tab" ], { "title": "Asthma exacerbation and convalescent phases: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells of children with acute asthma during exacerbation and at subsequent convalescence. Severe asthma exacerbations in children are associated with viral infection and occur among atopics. Results provide insight into the significance of these comorbidities.", "type": "Expression profiling by array", "pubmed_id": "19620293", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE16032", "order": "none", "update_date": "Feb 24 2010", "subsets": [ { "dataset_id": "GDS3615", "description": "convalescence", "sample_id": [ "GSM401289", "GSM401291", "GSM401293", "GSM401295", "GSM401297" ], "type": "disease state", "id": "GDS3615_1" }, { "dataset_id": "GDS3615", "description": "exacerbation", "sample_id": [ "GSM401290", "GSM401292", "GSM401294", "GSM401296", "GSM401298" ], "type": "disease state", "id": "GDS3615_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3615", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3615.tab", "compression": "gz" } ], [ [ "GDS3616.tab" ], { "title": "Primary coenzyme Q deficient liver response to probucol (430 2.0)", "description": "Analysis of livers from B6.Alb/cre,Pdss2(loxP/loxP) animals following treatment with probucol, an antioxidant/antihyperlipidemic agent. Results used to evaluate the performance of Affymetrix 430 2.0 in comparison to Affymetrix Gene 1.0 ST, and Illumina Mouse WG-6.", "type": "Expression profiling by array", "pubmed_id": "19944634", "platform": "GPL9523", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "23424", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE18677", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3616", "description": "untreated", "sample_id": [ "GSM467876", "GSM467877" ], "type": "agent", "id": "GDS3616_1" }, { "dataset_id": "GDS3616", "description": "probucol", "sample_id": [ "GSM467878", "GSM467879" ], "type": "agent", "id": "GDS3616_2" }, { "dataset_id": "GDS3616", "description": "female", "sample_id": [ "GSM467876", "GSM467878" ], "type": "gender", "id": "GDS3616_3" }, { "dataset_id": "GDS3616", "description": "male", "sample_id": [ "GSM467877", "GSM467879" ], "type": "gender", "id": "GDS3616_4" } ], "taxid": "10090", "genes": 21191, "aggregation_function": "mean", "name": "GDS3616", "version": 1.0, "instances": "4", "variables": 21194, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3616.tab", "compression": "gz" } ], [ [ "GDS3618.tab" ], { "title": "Primary coenzyme Q deficient liver response to probucol (Gene 1.0 ST)", "description": "Analysis of livers from B6.Alb/cre,Pdss2(loxP/loxP) animals following treatment with probucol, an antioxidant/antihyperlipidemic agent. Results used to evaluate the performance of Affymetrix Gene 1.0 ST in comparison to Affymetrix 430 2.0, and Illumina Mouse WG-6.", "type": "Expression profiling by array", "pubmed_id": "19944634", "platform": "GPL9525", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "42612", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE18677", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3618", "description": "untreated", "sample_id": [ "GSM467884", "GSM467885" ], "type": "agent", "id": "GDS3618_1" }, { "dataset_id": "GDS3618", "description": "probucol", "sample_id": [ "GSM467886", "GSM467887" ], "type": "agent", "id": "GDS3618_2" }, { "dataset_id": "GDS3618", "description": "female", "sample_id": [ "GSM467884", "GSM467886" ], "type": "gender", "id": "GDS3618_3" }, { "dataset_id": "GDS3618", "description": "male", "sample_id": [ "GSM467885", "GSM467887" ], "type": "gender", "id": "GDS3618_4" } ], "taxid": "10090", "genes": 35521, "aggregation_function": "mean", "name": "GDS3618", "version": 1.0, "instances": "4", "variables": 35524, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3618.tab", "compression": "gz" } ], [ [ "GDS3619.tab" ], { "title": "Primary coenzyme Q deficient liver response to probucol (WG-6 2.0)", "description": "Analysis of livers from B6.Alb/cre,Pdss2(loxP/loxP) animals following treatment with probucol, an antioxidant/antihyperlipidemic agent. Results used to evaluate the performance of Illumina Mouse WG-6 in comparison to Affymetrix 430 2.0, and Affymetrix Gene 1.0 ST.", "type": "Expression profiling by array", "pubmed_id": "19944634", "platform": "GPL9526", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "23829", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE18677", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3619", "description": "untreated", "sample_id": [ "GSM467888", "GSM467889", "GSM467892" ], "type": "agent", "id": "GDS3619_1" }, { "dataset_id": "GDS3619", "description": "probucol", "sample_id": [ "GSM467890", "GSM467891", "GSM467893" ], "type": "agent", "id": "GDS3619_2" }, { "dataset_id": "GDS3619", "description": "female", "sample_id": [ "GSM467888", "GSM467890" ], "type": "gender", "id": "GDS3619_3" }, { "dataset_id": "GDS3619", "description": "male", "sample_id": [ "GSM467889", "GSM467891", "GSM467892", "GSM467893" ], "type": "gender", "id": "GDS3619_4" }, { "dataset_id": "GDS3619", "description": "alb168", "sample_id": [ "GSM467888" ], "type": "individual", "id": "GDS3619_5" }, { "dataset_id": "GDS3619", "description": "alb187", "sample_id": [ "GSM467889", "GSM467892" ], "type": "individual", "id": "GDS3619_6" }, { "dataset_id": "GDS3619", "description": "alb189", "sample_id": [ "GSM467890" ], "type": "individual", "id": "GDS3619_7" }, { "dataset_id": "GDS3619", "description": "alb193", "sample_id": [ "GSM467891", "GSM467893" ], "type": "individual", "id": "GDS3619_8" } ], "taxid": "10090", "genes": 21570, "aggregation_function": "mean", "name": "GDS3619", "version": 1.0, "instances": "6", "variables": 21574, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3619.tab", "compression": "gz" } ], [ [ "GDS362.tab" ], { "title": "Aging in yeast", "description": "Wild type and sgs1 null yeast grown with or without DNA damaging agent methyl methanesulfonate (MMS). sgs1 homologous genes linked with Bloom's and Werner's aging syndromes in humans. sgs1 mutants have high sensitivity to MMS.", "type": "Expression profiling by array", "pubmed_id": "12875747", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE423", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS362", "description": "sgs1 null mutant", "sample_id": [ "GSM6219", "GSM6220", "GSM6221", "GSM6222" ], "type": "strain", "id": "GDS362_1" }, { "dataset_id": "GDS362", "description": "wild type", "sample_id": [ "GSM6223", "GSM6224", "GSM6225", "GSM6226" ], "type": "strain", "id": "GDS362_2" }, { "dataset_id": "GDS362", "description": "control", "sample_id": [ "GSM6219", "GSM6220", "GSM6223", "GSM6224" ], "type": "agent", "id": "GDS362_3" }, { "dataset_id": "GDS362", "description": "methyl methanesulfonate", "sample_id": [ "GSM6221", "GSM6222", "GSM6225", "GSM6226" ], "type": "agent", "id": "GDS362_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS362", "version": 1.0, "instances": "8", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS362.tab", "compression": "gz" } ], [ [ "GDS3620.tab" ], { "title": "Huntington disease model: brain striatum (430 2.0)", "description": "Analysis of brain striata from YAC128 trangenic animals at 12 and 24 months of age. The YAC128 transgenic animal is a model for Huntington disease (HD). Results provide insight into the pathogenesis of HD.", "type": "Expression profiling by array", "pubmed_id": "20089533", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE19677", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3620", "description": "wild type", "sample_id": [ "GSM461846", "GSM461847", "GSM461848", "GSM461849", "GSM461850", "GSM461852", "GSM461855", "GSM461859" ], "type": "genotype/variation", "id": "GDS3620_1" }, { "dataset_id": "GDS3620", "description": "YAC128", "sample_id": [ "GSM461842", "GSM461843", "GSM461844", "GSM461845", "GSM461851", "GSM461853", "GSM461854", "GSM461856", "GSM461857", "GSM461858" ], "type": "genotype/variation", "id": "GDS3620_2" }, { "dataset_id": "GDS3620", "description": "12 m", "sample_id": [ "GSM461842", "GSM461843", "GSM461844", "GSM461845", "GSM461846", "GSM461847", "GSM461848", "GSM461849" ], "type": "age", "id": "GDS3620_3" }, { "dataset_id": "GDS3620", "description": "24 m", "sample_id": [ "GSM461850", "GSM461851", "GSM461852", "GSM461853", "GSM461854", "GSM461855", "GSM461856", "GSM461857", "GSM461858", "GSM461859" ], "type": "age", "id": "GDS3620_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3620", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3620.tab", "compression": "gz" } ], [ [ "GDS3621.tab" ], { "title": "Huntington disease model: brain striatum (Ref-6 V1)", "description": "Analysis of brain striata from YAC128 trangenic animals at 12 and 24 months of age. The YAC128 transgenic animal is a model for Huntington disease (HD). Results provide insight into the pathogenesis of HD.", "type": "Expression profiling by array", "pubmed_id": "20089533", "platform": "GPL6333", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46120", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE19677", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3621", "description": "wild type", "sample_id": [ "GSM491327", "GSM491328", "GSM491329", "GSM491330", "GSM491336", "GSM491337", "GSM491338", "GSM491339" ], "type": "genotype/variation", "id": "GDS3621_1" }, { "dataset_id": "GDS3621", "description": "YAC128", "sample_id": [ "GSM491331", "GSM491332", "GSM491333", "GSM491334", "GSM491335", "GSM491340", "GSM491341", "GSM491342", "GSM491343", "GSM491344" ], "type": "genotype/variation", "id": "GDS3621_2" }, { "dataset_id": "GDS3621", "description": "12 m", "sample_id": [ "GSM491327", "GSM491328", "GSM491329", "GSM491330", "GSM491331", "GSM491332", "GSM491333", "GSM491334", "GSM491335" ], "type": "age", "id": "GDS3621_3" }, { "dataset_id": "GDS3621", "description": "24 m", "sample_id": [ "GSM491336", "GSM491337", "GSM491338", "GSM491339", "GSM491340", "GSM491341", "GSM491342", "GSM491343", "GSM491344" ], "type": "age", "id": "GDS3621_4" } ], "taxid": "10090", "genes": 31032, "aggregation_function": "mean", "name": "GDS3621", "version": 1.0, "instances": "18", "variables": 31035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3621.tab", "compression": "gz" } ], [ [ "GDS3622.tab" ], { "title": "Nrf2-deficient lung response to cigarette smoke: dose response and time course", "description": "Analysis of lungs from transcription factor Nrf2-deficient animals exposed to cigarette smoke (CS) at various doses and for various lengths of time with or without a subsequent recovery period. Results provide insight into the impact of Nrf2 in acute and subchronic smoking scenarios.", "type": "Expression profiling by array", "pubmed_id": "20133372", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "110", "value_type": "transformed count", "reference_series": "GSE18344", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3622", "description": "wild type", "sample_id": [ "GSM457913", "GSM457914", "GSM457915", "GSM457916", "GSM457917", "GSM457918", "GSM457919", "GSM457920", "GSM457921", "GSM457922", "GSM457923", "GSM457924", "GSM457925", "GSM457926", "GSM457927", "GSM457928", "GSM457937", "GSM457938", "GSM457939", "GSM457940", "GSM457941", "GSM457942", "GSM457943", "GSM457944", "GSM457945", "GSM457946", "GSM457947", "GSM457948", "GSM457949", "GSM457950", "GSM457951", "GSM457952", "GSM457967", "GSM457968", "GSM457969", "GSM457970", "GSM457971", "GSM457972", "GSM457973", "GSM457974", "GSM457975", "GSM457976", "GSM457977", "GSM457978", "GSM457979", "GSM457980", "GSM457981", "GSM457982", "GSM458007", "GSM458008", "GSM458009", "GSM458010", "GSM458011", "GSM458012", "GSM458013", "GSM458014" ], "type": "genotype/variation", "id": "GDS3622_1" }, { "dataset_id": "GDS3622", "description": "Nrf2 null", "sample_id": [ "GSM457905", "GSM457906", "GSM457907", "GSM457908", "GSM457909", "GSM457910", "GSM457911", "GSM457912", "GSM457929", "GSM457930", "GSM457931", "GSM457932", "GSM457933", "GSM457934", "GSM457935", "GSM457936", "GSM457953", "GSM457954", "GSM457955", "GSM457956", "GSM457957", "GSM457958", "GSM457959", "GSM457960", "GSM457961", "GSM457962", "GSM457963", "GSM457964", "GSM457965", "GSM457966", "GSM457983", "GSM457984", "GSM457985", "GSM457986", "GSM457987", "GSM457988", "GSM457989", "GSM457990", "GSM457991", "GSM457992", "GSM457993", "GSM457994", "GSM457995", "GSM457996", "GSM457997", "GSM457998", "GSM457999", "GSM458000", "GSM458001", "GSM458002", "GSM458003", "GSM458004", "GSM458005", "GSM458006" ], "type": "genotype/variation", "id": "GDS3622_2" }, { "dataset_id": "GDS3622", "description": "sham", "sample_id": [ "GSM457905", "GSM457906", "GSM457907", "GSM457908", "GSM457913", "GSM457914", "GSM457915", "GSM457916", "GSM457921", "GSM457922", "GSM457923", "GSM457924", "GSM457929", "GSM457930", "GSM457931", "GSM457932", "GSM457937", "GSM457938", "GSM457939", "GSM457940", "GSM457953", "GSM457954", "GSM457955", "GSM457967", "GSM457968", "GSM457969", "GSM457970", "GSM457983", "GSM457984", "GSM457985", "GSM457986", "GSM457999", "GSM458000", "GSM458001", "GSM458002", "GSM458007", "GSM458008", "GSM458009", "GSM458010" ], "type": "agent", "id": "GDS3622_3" }, { "dataset_id": "GDS3622", "description": "cigarette smoke", "sample_id": [ "GSM457909", "GSM457910", "GSM457911", "GSM457912", "GSM457917", "GSM457918", "GSM457919", "GSM457920", "GSM457925", "GSM457926", "GSM457927", "GSM457928", "GSM457933", "GSM457934", "GSM457935", "GSM457936", "GSM457941", "GSM457942", "GSM457943", "GSM457944", "GSM457945", "GSM457946", "GSM457947", "GSM457948", "GSM457949", "GSM457950", "GSM457951", "GSM457952", "GSM457956", "GSM457957", "GSM457958", "GSM457959", "GSM457960", "GSM457961", "GSM457962", "GSM457963", "GSM457964", "GSM457965", "GSM457966", "GSM457971", "GSM457972", "GSM457973", "GSM457974", "GSM457975", "GSM457976", "GSM457977", "GSM457978", "GSM457979", "GSM457980", "GSM457981", "GSM457982", "GSM457987", "GSM457988", "GSM457989", "GSM457990", "GSM457991", "GSM457992", "GSM457993", "GSM457994", "GSM457995", "GSM457996", "GSM457997", "GSM457998", "GSM458003", "GSM458004", "GSM458005", "GSM458006", "GSM458011", "GSM458012", "GSM458013", "GSM458014" ], "type": "agent", "id": "GDS3622_4" }, { "dataset_id": "GDS3622", "description": "control", "sample_id": [ "GSM457905", "GSM457906", "GSM457907", "GSM457908", "GSM457913", "GSM457914", "GSM457915", "GSM457916", "GSM457921", "GSM457922", "GSM457923", "GSM457924", "GSM457929", "GSM457930", "GSM457931", "GSM457932", "GSM457937", "GSM457938", "GSM457939", "GSM457940", "GSM457953", "GSM457954", "GSM457955", "GSM457967", "GSM457968", "GSM457969", "GSM457970", "GSM457983", "GSM457984", "GSM457985", "GSM457986", "GSM457999", "GSM458000", "GSM458001", "GSM458002", "GSM458007", "GSM458008", "GSM458009", "GSM458010" ], "type": "dose", "id": "GDS3622_5" }, { "dataset_id": "GDS3622", "description": "low", "sample_id": [ "GSM457941", "GSM457942", "GSM457943", "GSM457944", "GSM457956", "GSM457957", "GSM457958", "GSM457959", "GSM457971", "GSM457972", "GSM457973", "GSM457974", "GSM457987", "GSM457988", "GSM457989", "GSM457990" ], "type": "dose", "id": "GDS3622_6" }, { "dataset_id": "GDS3622", "description": "medium", "sample_id": [ "GSM457909", "GSM457910", "GSM457911", "GSM457912", "GSM457917", "GSM457918", "GSM457919", "GSM457920", "GSM457925", "GSM457926", "GSM457927", "GSM457928", "GSM457933", "GSM457934", "GSM457935", "GSM457936", "GSM457945", "GSM457946", "GSM457947", "GSM457948", "GSM457960", "GSM457961", "GSM457962", "GSM457963", "GSM457975", "GSM457976", "GSM457977", "GSM457978", "GSM457991", "GSM457992", "GSM457993", "GSM457994", "GSM458003", "GSM458004", "GSM458005", "GSM458006", "GSM458011", "GSM458012", "GSM458013", "GSM458014" ], "type": "dose", "id": "GDS3622_7" }, { "dataset_id": "GDS3622", "description": "high", "sample_id": [ "GSM457949", "GSM457950", "GSM457951", "GSM457952", "GSM457964", "GSM457965", "GSM457966", "GSM457979", "GSM457980", "GSM457981", "GSM457982", "GSM457995", "GSM457996", "GSM457997", "GSM457998" ], "type": "dose", "id": "GDS3622_8" }, { "dataset_id": "GDS3622", "description": "1 d", "sample_id": [ "GSM457905", "GSM457906", "GSM457907", "GSM457908", "GSM457909", "GSM457910", "GSM457911", "GSM457912", "GSM457913", "GSM457914", "GSM457915", "GSM457916", "GSM457917", "GSM457918", "GSM457919", "GSM457920" ], "type": "time", "id": "GDS3622_9" }, { "dataset_id": "GDS3622", "description": "2 m", "sample_id": [ "GSM457921", "GSM457922", "GSM457923", "GSM457924", "GSM457925", "GSM457926", "GSM457927", "GSM457928", "GSM457929", "GSM457930", "GSM457931", "GSM457932", "GSM457933", "GSM457934", "GSM457935", "GSM457936" ], "type": "time", "id": "GDS3622_10" }, { "dataset_id": "GDS3622", "description": "5 m", "sample_id": [ "GSM457937", "GSM457938", "GSM457939", "GSM457940", "GSM457941", "GSM457942", "GSM457943", "GSM457944", "GSM457945", "GSM457946", "GSM457947", "GSM457948", "GSM457949", "GSM457950", "GSM457951", "GSM457952", "GSM457953", "GSM457954", "GSM457955", "GSM457956", "GSM457957", "GSM457958", "GSM457959", "GSM457960", "GSM457961", "GSM457962", "GSM457963", "GSM457964", "GSM457965", "GSM457966", "GSM457967", "GSM457968", "GSM457969", "GSM457970", "GSM457971", "GSM457972", "GSM457973", "GSM457974", "GSM457975", "GSM457976", "GSM457977", "GSM457978", "GSM457979", "GSM457980", "GSM457981", "GSM457982", "GSM457983", "GSM457984", "GSM457985", "GSM457986", "GSM457987", "GSM457988", "GSM457989", "GSM457990", "GSM457991", "GSM457992", "GSM457993", "GSM457994", "GSM457995", "GSM457996", "GSM457997", "GSM457998", "GSM457999", "GSM458000", "GSM458001", "GSM458002", "GSM458003", "GSM458004", "GSM458005", "GSM458006", "GSM458007", "GSM458008", "GSM458009", "GSM458010", "GSM458011", "GSM458012", "GSM458013", "GSM458014" ], "type": "time", "id": "GDS3622_11" }, { "dataset_id": "GDS3622", "description": "no recovery", "sample_id": [ "GSM457905", "GSM457906", "GSM457907", "GSM457908", "GSM457909", "GSM457910", "GSM457911", "GSM457912", "GSM457913", "GSM457914", "GSM457915", "GSM457916", "GSM457917", "GSM457918", "GSM457919", "GSM457920", "GSM457921", "GSM457922", "GSM457923", "GSM457924", "GSM457925", "GSM457926", "GSM457927", "GSM457928", "GSM457929", "GSM457930", "GSM457931", "GSM457932", "GSM457933", "GSM457934", "GSM457935", "GSM457936", "GSM457937", "GSM457938", "GSM457939", "GSM457940", "GSM457941", "GSM457942", "GSM457943", "GSM457944", "GSM457945", "GSM457946", "GSM457947", "GSM457948", "GSM457949", "GSM457950", "GSM457951", "GSM457952", "GSM457953", "GSM457954", "GSM457955", "GSM457956", "GSM457957", "GSM457958", "GSM457959", "GSM457960", "GSM457961", "GSM457962", "GSM457963", "GSM457964", "GSM457965", "GSM457966" ], "type": "protocol", "id": "GDS3622_12" }, { "dataset_id": "GDS3622", "description": "1 d recovery", "sample_id": [ "GSM457967", "GSM457968", "GSM457969", "GSM457970", "GSM457971", "GSM457972", "GSM457973", "GSM457974", "GSM457975", "GSM457976", "GSM457977", "GSM457978", "GSM457979", "GSM457980", "GSM457981", "GSM457982", "GSM457983", "GSM457984", "GSM457985", "GSM457986", "GSM457987", "GSM457988", "GSM457989", "GSM457990", "GSM457991", "GSM457992", "GSM457993", "GSM457994", "GSM457995", "GSM457996", "GSM457997", "GSM457998" ], "type": "protocol", "id": "GDS3622_13" }, { "dataset_id": "GDS3622", "description": "13 d recovery", "sample_id": [ "GSM457999", "GSM458000", "GSM458001", "GSM458002", "GSM458003", "GSM458004", "GSM458005", "GSM458006", "GSM458007", "GSM458008", "GSM458009", "GSM458010", "GSM458011", "GSM458012", "GSM458013", "GSM458014" ], "type": "protocol", "id": "GDS3622_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3622", "version": 1.0, "instances": "110", "variables": 26687, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3622.tab", "compression": "gz" } ], [ [ "GDS3623.tab" ], { "title": "Heart regeneration in zebrafish", "description": "Analysis of hearts of zebrafish 1 to 7 days following partial heart amputation. Unlike mammals, zebrafish hearts display an extensive regenerative capacity. Results provide insight into the molecular basis of this regenerative capacity.", "type": "Expression profiling by array", "pubmed_id": "20179605", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE17993", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3623", "description": "not amputated", "sample_id": [ "GSM450363", "GSM450364", "GSM450365" ], "type": "protocol", "id": "GDS3623_1" }, { "dataset_id": "GDS3623", "description": "amputated", "sample_id": [ "GSM450366", "GSM450367", "GSM450368", "GSM450369", "GSM450370", "GSM450371", "GSM450372", "GSM450373", "GSM450374", "GSM450375", "GSM450376", "GSM450377" ], "type": "protocol", "id": "GDS3623_2" }, { "dataset_id": "GDS3623", "description": "control", "sample_id": [ "GSM450363", "GSM450364", "GSM450365" ], "type": "time", "id": "GDS3623_3" }, { "dataset_id": "GDS3623", "description": "1 d", "sample_id": [ "GSM450366", "GSM450367", "GSM450368" ], "type": "time", "id": "GDS3623_4" }, { "dataset_id": "GDS3623", "description": "3 d", "sample_id": [ "GSM450369", "GSM450370", "GSM450371" ], "type": "time", "id": "GDS3623_5" }, { "dataset_id": "GDS3623", "description": "5 d", "sample_id": [ "GSM450372", "GSM450373", "GSM450374" ], "type": "time", "id": "GDS3623_6" }, { "dataset_id": "GDS3623", "description": "7 d", "sample_id": [ "GSM450375", "GSM450376", "GSM450377" ], "type": "time", "id": "GDS3623_7" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS3623", "version": 1.0, "instances": "15", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3623.tab", "compression": "gz" } ], [ [ "GDS3624.tab" ], { "title": "Neurotrophin-3 effect on ovaries in vitro", "description": "Analysis of 4 day old ovaries cultured in the presence of neurotrophin-3 (NT3) for 2 days. Neurotrophins are growth factors involved in promoting cell survival and differentiation. Results provide insight into the role of NT3 in ovarian primordial follicle development.", "type": "Expression profiling by array", "pubmed_id": "19584175", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE20358", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3624", "description": "control", "sample_id": [ "GSM510066", "GSM510067", "GSM510068" ], "type": "agent", "id": "GDS3624_1" }, { "dataset_id": "GDS3624", "description": "NT3", "sample_id": [ "GSM510069", "GSM510070", "GSM510071" ], "type": "agent", "id": "GDS3624_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3624", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3624.tab", "compression": "gz" } ], [ [ "GDS3625.tab" ], { "title": "Heart atrium and ventricle", "description": "Comparison of heart atrial appendages and ventricular free walls. Unlike ventricular muscle cells, atrial muscle cells produce the hormones atrial natriuretic factor and brain natriuretic peptide. Results provide insight into the molecular basis of this phenotypic difference.", "type": "Expression profiling by array", "pubmed_id": "19486520", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE5266", "order": "none", "update_date": "Mar 29 2010", "subsets": [ { "dataset_id": "GDS3625", "description": "atrium", "sample_id": [ "GSM119422", "GSM119423", "GSM119424", "GSM119425" ], "type": "tissue", "id": "GDS3625_1" }, { "dataset_id": "GDS3625", "description": "ventricle", "sample_id": [ "GSM119426", "GSM119427", "GSM119428", "GSM119429" ], "type": "tissue", "id": "GDS3625_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3625", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3625.tab", "compression": "gz" } ], [ [ "GDS3626.tab" ], { "title": "Macrophage migration inhibitory factor depletion effect on kidney cell line", "description": "Analysis of HEK293 kidney cells depleted for the macrophage migration inhibitory factor (MIF). MIF depletion in HEK293 cells result in G(0)/G(1) cell cycle arrest. Results provide insight into the molecular mechanisms underlying this cell cycle arrest.", "type": "Expression profiling by array", "pubmed_id": "18469521", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10241", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3626", "description": "control", "sample_id": [ "GSM258516", "GSM258517" ], "type": "protocol", "id": "GDS3626_1" }, { "dataset_id": "GDS3626", "description": "MIF depletion", "sample_id": [ "GSM258515", "GSM258530" ], "type": "protocol", "id": "GDS3626_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3626", "version": 1.0, "instances": "4", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3626.tab", "compression": "gz" } ], [ [ "GDS3627.tab" ], { "title": "Non-small lung cancer subtypes: adenocarcinoma and squamous cell carcinoma", "description": "Comparison of two non-small cell lung cancer histological subtypes: adenocarcinomas (AC) and squamous cell carcinomas (SCC). Results provide insight into the molecular differences between AC and SCC.", "type": "Expression profiling by array", "pubmed_id": "18486272", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "58", "value_type": "transformed count", "reference_series": "GSE10245", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3627", "description": "squamous cell carcinoma", "sample_id": [ "GSM258553", "GSM258555", "GSM258556", "GSM258557", "GSM258562", "GSM258563", "GSM258565", "GSM258566", "GSM258570", "GSM258578", "GSM258580", "GSM258583", "GSM258585", "GSM258590", "GSM258594", "GSM258596", "GSM258599", "GSM258603" ], "type": "disease state", "id": "GDS3627_1" }, { "dataset_id": "GDS3627", "description": "adenocarcinoma", "sample_id": [ "GSM258551", "GSM258552", "GSM258554", "GSM258558", "GSM258559", "GSM258560", "GSM258561", "GSM258564", "GSM258567", "GSM258568", "GSM258569", "GSM258571", "GSM258572", "GSM258573", "GSM258574", "GSM258575", "GSM258576", "GSM258577", "GSM258579", "GSM258581", "GSM258582", "GSM258584", "GSM258586", "GSM258587", "GSM258588", "GSM258589", "GSM258591", "GSM258592", "GSM258593", "GSM258595", "GSM258597", "GSM258598", "GSM258600", "GSM258601", "GSM258602", "GSM258604", "GSM258605", "GSM258606", "GSM258607", "GSM258608" ], "type": "disease state", "id": "GDS3627_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3627", "version": 1.0, "instances": "58", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3627.tab", "compression": "gz" } ], [ [ "GDS3628.tab" ], { "title": "Rheumatoid arthritis and response to anti-TNF alpha therapy: blood", "description": "Analysis of whole blood from rheumatoid arthritis patients at baseline of infliximab therapy. Infliximab is an anti-TNF alpha antibody. Clinical response to infliximab determined at week 14 of therapy. Results identify a gene expression signature for predicting the response to infliximab.", "type": "Expression profiling by array", "pubmed_id": "19847310", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE12051", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3628", "description": "non-responder", "sample_id": [ "GSM304385", "GSM304386", "GSM304387", "GSM304388", "GSM304389", "GSM304391", "GSM304392" ], "type": "disease state", "id": "GDS3628_1" }, { "dataset_id": "GDS3628", "description": "responder", "sample_id": [ "GSM304393", "GSM304396", "GSM304398", "GSM304399", "GSM304400", "GSM304401", "GSM304402", "GSM304409", "GSM304410", "GSM304411", "GSM304412", "GSM304413", "GSM304414", "GSM304416", "GSM304417", "GSM304418", "GSM304419", "GSM304421", "GSM304422", "GSM304423", "GSM304425", "GSM304426", "GSM304427", "GSM304428", "GSM304429", "GSM304430", "GSM304431", "GSM304432", "GSM304433", "GSM304434", "GSM304436", "GSM304437", "GSM304438", "GSM304440", "GSM304441", "GSM304443", "GSM304444" ], "type": "disease state", "id": "GDS3628_2" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS3628", "version": 1.0, "instances": "44", "variables": 44919, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3628.tab", "compression": "gz" } ], [ [ "GDS3629.tab" ], { "title": "Rod-derived cone viability factor deficiency effect on the retina", "description": "Analysis of retinas from animals lacking the rod-derived cone viability factor (RdCVF). RdCVF is encoded by the Nxnl1 gene. Cone loss in animal models of retinitis pigmentosa is reduced by RdCVF protein therapy. Results provide insight into the physiological role of RdCVF in the retina.", "type": "Expression profiling by array", "pubmed_id": "20139892", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE13869", "order": "none", "update_date": "Mar 01 2010", "subsets": [ { "dataset_id": "GDS3629", "description": "heterozygous Nxnl1 null", "sample_id": [ "GSM349024", "GSM349027" ], "type": "genotype/variation", "id": "GDS3629_1" }, { "dataset_id": "GDS3629", "description": "wild type", "sample_id": [ "GSM349023", "GSM349026", "GSM349029" ], "type": "genotype/variation", "id": "GDS3629_2" }, { "dataset_id": "GDS3629", "description": "homozygous Nxnl1 null", "sample_id": [ "GSM349025", "GSM349028", "GSM349030" ], "type": "genotype/variation", "id": "GDS3629_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3629", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3629.tab", "compression": "gz" } ], [ [ "GDS3630.tab" ], { "title": "Monozygotic and dizygotic twin pairs: intestinal mucosa", "description": "Analysis of healthy intestinal mucosa biopsies from 10 monozygotic and 10 dizygotic twin pairs. Barrier organs such as the gut are exposed to continual environmental challenge. Results provide insight into genetic and non-genetic determinants of gene expression.", "type": "Expression profiling by array", "pubmed_id": [ "19276242", "21621540" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE7821", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3630", "description": "monozygotic twin", "sample_id": [ "GSM189751", "GSM189752", "GSM189753", "GSM189754", "GSM189755", "GSM189756", "GSM189757", "GSM189758", "GSM189759", "GSM189760", "GSM189761", "GSM189762", "GSM189763", "GSM189764", "GSM189765", "GSM189766", "GSM189767", "GSM189768", "GSM189769", "GSM189770" ], "type": "genotype/variation", "id": "GDS3630_1" }, { "dataset_id": "GDS3630", "description": "dizygotic twin", "sample_id": [ "GSM189771", "GSM189772", "GSM189773", "GSM189774", "GSM189775", "GSM189776", "GSM189777", "GSM189778", "GSM189779", "GSM189780", "GSM189781", "GSM189782", "GSM189783", "GSM189784", "GSM189785", "GSM189786", "GSM189787", "GSM189788", "GSM189789", "GSM189790" ], "type": "genotype/variation", "id": "GDS3630_2" }, { "dataset_id": "GDS3630", "description": "pair 1", "sample_id": [ "GSM189751", "GSM189752" ], "type": "other", "id": "GDS3630_3" }, { "dataset_id": "GDS3630", "description": "pair 2", "sample_id": [ "GSM189753", "GSM189754" ], "type": "other", "id": "GDS3630_4" }, { "dataset_id": "GDS3630", "description": "pair 3", "sample_id": [ "GSM189755", "GSM189756" ], "type": "other", "id": "GDS3630_5" }, { "dataset_id": "GDS3630", "description": "pair 4", "sample_id": [ "GSM189757", "GSM189758" ], "type": "other", "id": "GDS3630_6" }, { "dataset_id": "GDS3630", "description": "pair 5", "sample_id": [ "GSM189759", "GSM189760" ], "type": "other", "id": "GDS3630_7" }, { "dataset_id": "GDS3630", "description": "pair 6", "sample_id": [ "GSM189761", "GSM189762" ], "type": "other", "id": "GDS3630_8" }, { "dataset_id": "GDS3630", "description": "pair 7", "sample_id": [ "GSM189763", "GSM189764" ], "type": "other", "id": "GDS3630_9" }, { "dataset_id": "GDS3630", "description": "pair 8", "sample_id": [ "GSM189765", "GSM189766" ], "type": "other", "id": "GDS3630_10" }, { "dataset_id": "GDS3630", "description": "pair 11", "sample_id": [ "GSM189767", "GSM189768" ], "type": "other", "id": "GDS3630_11" }, { "dataset_id": "GDS3630", "description": "pair 12", "sample_id": [ "GSM189769", "GSM189770" ], "type": "other", "id": "GDS3630_12" }, { "dataset_id": "GDS3630", "description": "pair 20", "sample_id": [ "GSM189771", "GSM189772" ], "type": "other", "id": "GDS3630_13" }, { "dataset_id": "GDS3630", "description": "pair 21", "sample_id": [ "GSM189773", "GSM189774" ], "type": "other", "id": "GDS3630_14" }, { "dataset_id": "GDS3630", "description": "pair 23", "sample_id": [ "GSM189777", "GSM189778" ], "type": "other", "id": "GDS3630_15" }, { "dataset_id": "GDS3630", "description": "pair 24", "sample_id": [ "GSM189779", "GSM189780" ], "type": "other", "id": "GDS3630_16" }, { "dataset_id": "GDS3630", "description": "pair 25", "sample_id": [ "GSM189781", "GSM189782" ], "type": "other", "id": "GDS3630_17" }, { "dataset_id": "GDS3630", "description": "pair 26", "sample_id": [ "GSM189783", "GSM189784" ], "type": "other", "id": "GDS3630_18" }, { "dataset_id": "GDS3630", "description": "pair 27", "sample_id": [ "GSM189785", "GSM189786" ], "type": "other", "id": "GDS3630_19" }, { "dataset_id": "GDS3630", "description": "pair 28", "sample_id": [ "GSM189787", "GSM189788" ], "type": "other", "id": "GDS3630_20" }, { "dataset_id": "GDS3630", "description": "pair 29", "sample_id": [ "GSM189789", "GSM189790" ], "type": "other", "id": "GDS3630_21" }, { "dataset_id": "GDS3630", "description": "female", "sample_id": [ "GSM189751", "GSM189752", "GSM189753", "GSM189754", "GSM189755", "GSM189756", "GSM189757", "GSM189758", "GSM189759", "GSM189760", "GSM189763", "GSM189764", "GSM189765", "GSM189766", "GSM189771", "GSM189772", "GSM189773", "GSM189774", "GSM189779", "GSM189780", "GSM189781", "GSM189782", "GSM189783", "GSM189784", "GSM189785", "GSM189786", "GSM189789", "GSM189790" ], "type": "gender", "id": "GDS3630_22" }, { "dataset_id": "GDS3630", "description": "male", "sample_id": [ "GSM189761", "GSM189762", "GSM189767", "GSM189768", "GSM189769", "GSM189770", "GSM189775", "GSM189776", "GSM189777", "GSM189778", "GSM189787", "GSM189788" ], "type": "gender", "id": "GDS3630_23" }, { "dataset_id": "GDS3630", "description": "pair 22", "sample_id": [ "GSM189775", "GSM189776" ], "type": "other", "id": "GDS3630_24" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3630", "version": 1.0, "instances": "40", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3630.tab", "compression": "gz" } ], [ [ "GDS3631.tab" ], { "title": "Asthma and socioeconomic status: peripheral blood CD2+ leukocyte", "description": "Analysis of peripheral blood CD2+ leukocytes from asthmatic children of low and high socioeconomic families. Low socioeconomic status is a social factor associated with disease morbidity, including more severe asthma in childhood. Results provide insight into the molecular basis of this link.", "type": "Expression profiling by array", "pubmed_id": "19001005", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE7894", "order": "none", "update_date": "Mar 02 2010", "subsets": [ { "dataset_id": "GDS3631", "description": "low socioeconomic status", "sample_id": [ "GSM194174", "GSM194175", "GSM194176", "GSM194177", "GSM194178", "GSM194179", "GSM194180", "GSM194181", "GSM194182", "GSM194183", "GSM194184", "GSM194185", "GSM194186", "GSM194187", "GSM194188", "GSM194189" ], "type": "other", "id": "GDS3631_1" }, { "dataset_id": "GDS3631", "description": "high socioeconomic status", "sample_id": [ "GSM194190", "GSM194191", "GSM194192", "GSM194193", "GSM194194", "GSM194195", "GSM194196", "GSM194197", "GSM194198", "GSM194199", "GSM194200", "GSM194201", "GSM194202" ], "type": "other", "id": "GDS3631_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3631", "version": 1.0, "instances": "29", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3631.tab", "compression": "gz" } ], [ [ "GDS3632.tab" ], { "title": "Cadmium effect on hepatocyte in vitro", "description": "Analysis of primary cultured hepatocytes exposed to 4 uM cadmium for 3 hours. Cadmium is a potent carcinogen. Results provide insight into the molecular basis of cadmium toxicity.", "type": "Expression profiling by array", "pubmed_id": "19010381", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE8013", "order": "none", "update_date": "Mar 02 2010", "subsets": [ { "dataset_id": "GDS3632", "description": "control", "sample_id": [ "GSM197832", "GSM197833", "GSM197834", "GSM197835" ], "type": "agent", "id": "GDS3632_1" }, { "dataset_id": "GDS3632", "description": "cadmium", "sample_id": [ "GSM197836", "GSM197837", "GSM197838", "GSM197839" ], "type": "agent", "id": "GDS3632_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3632", "version": 1.0, "instances": "8", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3632.tab", "compression": "gz" } ], [ [ "GDS3633.tab" ], { "title": "p24 deficiency", "description": "Analysis of abdominal and head/thorax segments of mutants lacking p24. Members of the p24 protein family are transmembrane constituents of the ER and Golgi-derived transport vesicles that function in trafficking secretory proteins. Results provide insight into the effect of the loss of p24 function.", "type": "Expression profiling by array", "pubmed_id": "18466616", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE10940", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3633", "description": "control", "sample_id": [ "GSM277408", "GSM277409", "GSM277410", "GSM277411", "GSM277412", "GSM277413" ], "type": "genotype/variation", "id": "GDS3633_1" }, { "dataset_id": "GDS3633", "description": "p24 null", "sample_id": [ "GSM277414", "GSM277415", "GSM277416", "GSM277417", "GSM277418", "GSM277419" ], "type": "genotype/variation", "id": "GDS3633_2" }, { "dataset_id": "GDS3633", "description": "abdomen", "sample_id": [ "GSM277408", "GSM277409", "GSM277410", "GSM277414", "GSM277415", "GSM277416" ], "type": "tissue", "id": "GDS3633_3" }, { "dataset_id": "GDS3633", "description": "head to thorax", "sample_id": [ "GSM277411", "GSM277412", "GSM277413", "GSM277417", "GSM277418", "GSM277419" ], "type": "tissue", "id": "GDS3633_4" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3633", "version": 1.0, "instances": "12", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3633.tab", "compression": "gz" } ], [ [ "GDS3634.tab" ], { "title": "miR-205 expression effect on prostate cancer cell line", "description": "Analysis of DU145 prostate cancer cells with restored miR-205 expression. miR-205 expression is lower in prostate cancer cell lines than in normal cell lines, as well as in prostate tumors than in matched normal prostate tissues. Results provide insight into the role of miR-205 in prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "19244118", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE11701", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3634", "description": "control", "sample_id": [ "GSM297214", "GSM297215", "GSM297216", "GSM297217" ], "type": "protocol", "id": "GDS3634_1" }, { "dataset_id": "GDS3634", "description": "miR-205 expression", "sample_id": [ "GSM297218", "GSM297219", "GSM297220", "GSM297221" ], "type": "protocol", "id": "GDS3634_2" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS3634", "version": 1.0, "instances": "8", "variables": 18869, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3634.tab", "compression": "gz" } ], [ [ "GDS3635.tab" ], { "title": "Vitamin C effect on skin fibroblast cell line", "description": "Analysis of GM5659 skin fibroblasts treated with ascorbic acid or the stable vitamin C derivative, ascorbic acid 2-phosphate. Vitamin C is an important water-soluble free radical scavenger and an essential cofactor for collagen synthesis by dermal fibroblasts.", "type": "Expression profiling by array", "pubmed_id": "18973801", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE11919", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3635", "description": "control", "sample_id": [ "GSM301264", "GSM301265", "GSM301266" ], "type": "agent", "id": "GDS3635_1" }, { "dataset_id": "GDS3635", "description": "ascorbic acid", "sample_id": [ "GSM301258", "GSM301262", "GSM301263" ], "type": "agent", "id": "GDS3635_2" }, { "dataset_id": "GDS3635", "description": "ascorbic acid 2-phosphate", "sample_id": [ "GSM301253", "GSM301254", "GSM301256" ], "type": "agent", "id": "GDS3635_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3635", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3635.tab", "compression": "gz" } ], [ [ "GDS3636.tab" ], { "title": "Matricellular glycoprotein SPARC deficiency effect on lens epithelium", "description": "Analysis of lens epithelia from animals lacking SPARC. SPARC is a matricellular glycoprotein involved in regulation of extracellular matrix, growth factors, adhesion, and migration. Results provide insight into the function of SPARC in the lens.", "type": "Expression profiling by array", "pubmed_id": "19401199", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE13402", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3636", "description": "wild type", "sample_id": [ "GSM338339", "GSM338341", "GSM338342" ], "type": "genotype/variation", "id": "GDS3636_1" }, { "dataset_id": "GDS3636", "description": "SPARC null", "sample_id": [ "GSM338336", "GSM338338", "GSM338340", "GSM338343" ], "type": "genotype/variation", "id": "GDS3636_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3636", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3636.tab", "compression": "gz" } ], [ [ "GDS3637.tab" ], { "title": "Myostatin depletion effect on mature skeletal muscle", "description": "Analysis of mature skeletal muscle depleted for the TBFb protein myostatin (MSTN). MSTN inhibits muscle differentiation and growth. MSTN deficiency during development results in muscle hypertrophy. Results provide insight into the effect of reducing MSTN activity after normal muscle development.", "type": "Expression profiling by array", "pubmed_id": "19509079", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE15349", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3637", "description": "control", "sample_id": [ "GSM385406", "GSM385407", "GSM385408", "GSM385409", "GSM385410" ], "type": "protocol", "id": "GDS3637_1" }, { "dataset_id": "GDS3637", "description": "myostatin depletion", "sample_id": [ "GSM385411", "GSM385412", "GSM385413", "GSM385414", "GSM385415" ], "type": "protocol", "id": "GDS3637_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3637", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3637.tab", "compression": "gz" } ], [ [ "GDS3638.tab" ], { "title": "Actein effect on breast cancer cell line: dose response and time course", "description": "Analysis of MDB-MB-453 breast cancer cells treated with 20 or 40 ug/ml actein for 6 or 24 hours. Actein is a triterpene glycoside from the herb black cohosh and inhibits the growth of cancer cells in vitro. Results provide insight into the molecular basis of this inhibitory effect.", "type": "Expression profiling by array", "pubmed_id": "17621630", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE7848", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3638", "description": "DMSO", "sample_id": [ "GSM185884", "GSM185885", "GSM187297", "GSM187690", "GSM189660", "GSM189661" ], "type": "agent", "id": "GDS3638_1" }, { "dataset_id": "GDS3638", "description": "actein", "sample_id": [ "GSM184379", "GSM185036", "GSM185508", "GSM188211", "GSM188220", "GSM188221", "GSM188459", "GSM188482", "GSM189113", "GSM189115" ], "type": "agent", "id": "GDS3638_2" }, { "dataset_id": "GDS3638", "description": "control", "sample_id": [ "GSM185884", "GSM185885", "GSM187297", "GSM187690", "GSM189660", "GSM189661" ], "type": "dose", "id": "GDS3638_3" }, { "dataset_id": "GDS3638", "description": "20 ug/ml", "sample_id": [ "GSM188211", "GSM188220", "GSM188221", "GSM189113", "GSM189115" ], "type": "dose", "id": "GDS3638_4" }, { "dataset_id": "GDS3638", "description": "40 ug/ml", "sample_id": [ "GSM184379", "GSM185036", "GSM185508", "GSM188459", "GSM188482" ], "type": "dose", "id": "GDS3638_5" }, { "dataset_id": "GDS3638", "description": "6 h", "sample_id": [ "GSM188459", "GSM188482", "GSM189113", "GSM189115", "GSM189660", "GSM189661" ], "type": "time", "id": "GDS3638_6" }, { "dataset_id": "GDS3638", "description": "24 h", "sample_id": [ "GSM184379", "GSM185036", "GSM185508", "GSM185884", "GSM185885", "GSM187297", "GSM187690", "GSM188211", "GSM188220", "GSM188221" ], "type": "time", "id": "GDS3638_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3638", "version": 1.0, "instances": "16", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3638.tab", "compression": "gz" } ], [ [ "GDS3639.tab" ], { "title": "Male and female fruit flies of various wild-type laboratory strains", "description": "Analysis of male and female flies of 5 wild-type laboratory strains. Results provide insight into the extent to which transcriptional variation is inherent in commonly used laboratory strains and the relationship of variation in gene expression to sexual dimorphism.", "type": "Expression profiling by array", "pubmed_id": "18070343", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE9149", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3639", "description": "male", "sample_id": [ "GSM231205", "GSM231206", "GSM231207", "GSM231211", "GSM231212", "GSM231213", "GSM231217", "GSM231218", "GSM231219", "GSM231223", "GSM231224", "GSM231225", "GSM231229", "GSM231230", "GSM231231" ], "type": "gender", "id": "GDS3639_1" }, { "dataset_id": "GDS3639", "description": "female", "sample_id": [ "GSM231208", "GSM231209", "GSM231210", "GSM231214", "GSM231215", "GSM231216", "GSM231220", "GSM231221", "GSM231222", "GSM231226", "GSM231227", "GSM231228", "GSM231232", "GSM231233" ], "type": "gender", "id": "GDS3639_2" }, { "dataset_id": "GDS3639", "description": "France", "sample_id": [ "GSM231205", "GSM231206", "GSM231207", "GSM231208", "GSM231209", "GSM231210" ], "type": "strain", "id": "GDS3639_3" }, { "dataset_id": "GDS3639", "description": "Antigua", "sample_id": [ "GSM231211", "GSM231212", "GSM231213", "GSM231214", "GSM231215", "GSM231216" ], "type": "strain", "id": "GDS3639_4" }, { "dataset_id": "GDS3639", "description": "Glasgow", "sample_id": [ "GSM231217", "GSM231218", "GSM231219", "GSM231220", "GSM231221", "GSM231222" ], "type": "strain", "id": "GDS3639_5" }, { "dataset_id": "GDS3639", "description": "Cambridge", "sample_id": [ "GSM231223", "GSM231224", "GSM231225", "GSM231226", "GSM231227", "GSM231228" ], "type": "strain", "id": "GDS3639_6" }, { "dataset_id": "GDS3639", "description": "Hikone", "sample_id": [ "GSM231229", "GSM231230", "GSM231231", "GSM231232", "GSM231233" ], "type": "strain", "id": "GDS3639_7" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS3639", "version": 1.0, "instances": "29", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3639.tab", "compression": "gz" } ], [ [ "GDS364.tab" ], { "title": "Anesthetic effect on brain", "description": "Analysis of effect of repetitive exposure to halothane or isoflurane inhalation anesthetics on whole brain tissue. Male Sprague Dawley rats examined.", "type": "Expression profiling by array", "pubmed_id": "16495776", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE6433", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS364", "description": "halothane", "sample_id": [ "GSM5082", "GSM5084", "GSM5085", "GSM5086", "GSM5087", "GSM5090", "GSM5105", "GSM5106", "GSM5107", "GSM5108", "GSM5109", "GSM5110", "GSM5111", "GSM5112", "GSM5113", "GSM11379", "GSM11380", "GSM11381" ], "type": "agent", "id": "GDS364_1" }, { "dataset_id": "GDS364", "description": "isoflurane", "sample_id": [ "GSM5114", "GSM5115", "GSM5116", "GSM5117", "GSM5118", "GSM5119" ], "type": "agent", "id": "GDS364_2" }, { "dataset_id": "GDS364", "description": "control (3 min exposure)", "sample_id": [ "GSM5082", "GSM5084", "GSM5085", "GSM5086", "GSM5087", "GSM5090", "GSM5105", "GSM5106", "GSM5107", "GSM11379", "GSM11380", "GSM11381" ], "type": "protocol", "id": "GDS364_3" }, { "dataset_id": "GDS364", "description": "5 exposures", "sample_id": [ "GSM5111", "GSM5112", "GSM5113", "GSM5117", "GSM5118", "GSM5119" ], "type": "protocol", "id": "GDS364_4" }, { "dataset_id": "GDS364", "description": "10 exposures", "sample_id": [ "GSM5108", "GSM5109", "GSM5110", "GSM5114", "GSM5115", "GSM5116" ], "type": "protocol", "id": "GDS364_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS364", "version": 1.0, "instances": "24", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS364.tab", "compression": "gz" } ], [ [ "GDS3640.tab" ], { "title": "Copper effect on liver cell line: dose response and time course", "description": "Analysis of HepG2 liver cells treated with up to 600 uM copper sulfate for up to 24 hours. Copper is an essential trace element but can be extremely toxic at supraphysiological levels. Results provide insight into the molecular basis of copper toxicity.", "type": "Expression profiling by array", "pubmed_id": "19549813", "platform": "GPL6087", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "20228", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "98", "value_type": "log e ratio", "reference_series": "GSE9539", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3640", "description": "100 uM Cu", "sample_id": [ "GSM241451", "GSM241452", "GSM241453", "GSM241454", "GSM241455", "GSM241456", "GSM241457", "GSM241458", "GSM241459", "GSM241460", "GSM241461", "GSM241462", "GSM241463", "GSM241464", "GSM241465", "GSM241466", "GSM241467", "GSM241468", "GSM241469", "GSM241470", "GSM241471", "GSM241472", "GSM241473", "GSM241474" ], "type": "dose", "id": "GDS3640_1" }, { "dataset_id": "GDS3640", "description": "200 uM Cu", "sample_id": [ "GSM241475", "GSM241476", "GSM241477", "GSM241478", "GSM241479", "GSM241480", "GSM241481", "GSM241482", "GSM241483", "GSM241484", "GSM241485", "GSM241486", "GSM241487", "GSM241488", "GSM241489", "GSM241490", "GSM241491", "GSM241492", "GSM241493", "GSM241494", "GSM241495", "GSM241496", "GSM241497", "GSM241498" ], "type": "dose", "id": "GDS3640_2" }, { "dataset_id": "GDS3640", "description": "400 uM Cu", "sample_id": [ "GSM241499", "GSM241500", "GSM241501", "GSM241502", "GSM241503", "GSM241504", "GSM241505", "GSM241506", "GSM241507", "GSM241508", "GSM241509", "GSM241510", "GSM241511", "GSM241512", "GSM241513", "GSM241514", "GSM241515", "GSM241516", "GSM241517", "GSM241518", "GSM241519", "GSM241520", "GSM241521", "GSM241522", "GSM241523", "GSM241524" ], "type": "dose", "id": "GDS3640_3" }, { "dataset_id": "GDS3640", "description": "600 uM Cu", "sample_id": [ "GSM241525", "GSM241526", "GSM241527", "GSM241528", "GSM241529", "GSM241530", "GSM241531", "GSM241532", "GSM241533", "GSM241534", "GSM241535", "GSM241536", "GSM241537", "GSM241538", "GSM241539", "GSM241540", "GSM241541", "GSM241542", "GSM241543", "GSM241544", "GSM241545", "GSM241546", "GSM241547", "GSM241548" ], "type": "dose", "id": "GDS3640_4" }, { "dataset_id": "GDS3640", "description": "4 h", "sample_id": [ "GSM241451", "GSM241452", "GSM241453", "GSM241454", "GSM241455", "GSM241456", "GSM241475", "GSM241476", "GSM241477", "GSM241478", "GSM241479", "GSM241480", "GSM241499", "GSM241500", "GSM241501", "GSM241502", "GSM241503", "GSM241504", "GSM241505", "GSM241506", "GSM241525", "GSM241526", "GSM241527", "GSM241528", "GSM241529", "GSM241530" ], "type": "time", "id": "GDS3640_5" }, { "dataset_id": "GDS3640", "description": "8 h", "sample_id": [ "GSM241457", "GSM241458", "GSM241459", "GSM241460", "GSM241461", "GSM241462", "GSM241481", "GSM241482", "GSM241483", "GSM241484", "GSM241485", "GSM241486", "GSM241507", "GSM241508", "GSM241509", "GSM241510", "GSM241511", "GSM241512", "GSM241531", "GSM241532", "GSM241533", "GSM241534", "GSM241535", "GSM241536" ], "type": "time", "id": "GDS3640_6" }, { "dataset_id": "GDS3640", "description": "12 h", "sample_id": [ "GSM241463", "GSM241464", "GSM241465", "GSM241466", "GSM241467", "GSM241468", "GSM241487", "GSM241488", "GSM241489", "GSM241490", "GSM241491", "GSM241492", "GSM241513", "GSM241514", "GSM241515", "GSM241516", "GSM241517", "GSM241518", "GSM241537", "GSM241538", "GSM241539", "GSM241540", "GSM241541", "GSM241542" ], "type": "time", "id": "GDS3640_7" }, { "dataset_id": "GDS3640", "description": "24 h", "sample_id": [ "GSM241469", "GSM241470", "GSM241471", "GSM241472", "GSM241473", "GSM241474", "GSM241493", "GSM241494", "GSM241495", "GSM241496", "GSM241497", "GSM241498", "GSM241519", "GSM241520", "GSM241521", "GSM241522", "GSM241523", "GSM241524", "GSM241543", "GSM241544", "GSM241545", "GSM241546", "GSM241547", "GSM241548" ], "type": "time", "id": "GDS3640_8" } ], "taxid": "9606", "genes": 18342, "aggregation_function": "mean", "name": "GDS3640", "version": 1.0, "instances": "98", "variables": 18345, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3640.tab", "compression": "gz" } ], [ [ "GDS3641.tab" ], { "title": "Methyltransferase Hypb deficiency effect on the yolk sac during development", "description": "Analysis of yolk sacs from E9 and E10.5 embryos lacking Hypb, a histone H3 lysine 36-specific methytransferase. Hypb deficiency results in lethality at E10.5-E11.5 and severe vascular defects in the embryo, yolk sac, and placenta. Results provide insight into the function of Hypb in development.", "type": "Expression profiling by array", "pubmed_id": "20133625", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE10113", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3641", "description": "Hypb null", "sample_id": [ "GSM255648", "GSM255653", "GSM255654", "GSM255747", "GSM255748", "GSM255751" ], "type": "genotype/variation", "id": "GDS3641_1" }, { "dataset_id": "GDS3641", "description": "wild type", "sample_id": [ "GSM255657", "GSM255740", "GSM255746", "GSM255749", "GSM255750", "GSM255753" ], "type": "genotype/variation", "id": "GDS3641_2" }, { "dataset_id": "GDS3641", "description": "E9", "sample_id": [ "GSM255648", "GSM255653", "GSM255654", "GSM255657", "GSM255740", "GSM255746" ], "type": "development stage", "id": "GDS3641_3" }, { "dataset_id": "GDS3641", "description": "E10.5", "sample_id": [ "GSM255747", "GSM255748", "GSM255749", "GSM255750", "GSM255751", "GSM255753" ], "type": "development stage", "id": "GDS3641_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3641", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3641.tab", "compression": "gz" } ], [ [ "GDS3642.tab" ], { "title": "Fasting effect on the liver", "description": "Analysis of livers from male FVB animals fasting for up to 72 hours. Results provide insight into the adaptive response of the liver to fasting.", "type": "Expression profiling by array", "pubmed_id": "18990241", "platform": "GPL922", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE10653", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3642", "description": "baseline control", "sample_id": [ "GSM268253", "GSM268254", "GSM268255" ], "type": "time", "id": "GDS3642_1" }, { "dataset_id": "GDS3642", "description": "12 h", "sample_id": [ "GSM269467", "GSM269469", "GSM269471" ], "type": "time", "id": "GDS3642_2" }, { "dataset_id": "GDS3642", "description": "24 h", "sample_id": [ "GSM269507", "GSM269524", "GSM269525" ], "type": "time", "id": "GDS3642_3" }, { "dataset_id": "GDS3642", "description": "72 h", "sample_id": [ "GSM269533", "GSM269534", "GSM269535" ], "type": "time", "id": "GDS3642_4" } ], "taxid": "10090", "genes": 17212, "aggregation_function": "mean", "name": "GDS3642", "version": 1.0, "instances": "12", "variables": 17214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3642.tab", "compression": "gz" } ], [ [ "GDS3643.tab" ], { "title": "D-serine effect on the brain: dose response", "description": "Analysis of forebrains of animals treated with up to 500 mg/kg D-serine for 96 hours. D-serine is involved in many physiological processes through its interaction with the glycine binding site of the NMDA receptor. Results provide insight into the impact of D-serine exposure on neuronal functions.", "type": "Expression profiling by array", "pubmed_id": "19212759", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE10748", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3643", "description": "control", "sample_id": [ "GSM271362", "GSM271365", "GSM271367", "GSM271369" ], "type": "agent", "id": "GDS3643_1" }, { "dataset_id": "GDS3643", "description": "D-serine", "sample_id": [ "GSM271372", "GSM271375", "GSM271377", "GSM271379", "GSM271382", "GSM271383", "GSM271384", "GSM271385", "GSM271386", "GSM271387", "GSM271388", "GSM271389", "GSM271390", "GSM271391", "GSM271392", "GSM271393", "GSM271394", "GSM271395", "GSM271396", "GSM271397" ], "type": "agent", "id": "GDS3643_2" }, { "dataset_id": "GDS3643", "description": "0 mg/kg", "sample_id": [ "GSM271362", "GSM271365", "GSM271367", "GSM271369" ], "type": "dose", "id": "GDS3643_3" }, { "dataset_id": "GDS3643", "description": "5 mg/kg", "sample_id": [ "GSM271372", "GSM271375", "GSM271377", "GSM271379" ], "type": "dose", "id": "GDS3643_4" }, { "dataset_id": "GDS3643", "description": "20 mg/kg", "sample_id": [ "GSM271382", "GSM271383", "GSM271384", "GSM271385" ], "type": "dose", "id": "GDS3643_5" }, { "dataset_id": "GDS3643", "description": "50 mg/kg", "sample_id": [ "GSM271386", "GSM271387", "GSM271388", "GSM271389" ], "type": "dose", "id": "GDS3643_6" }, { "dataset_id": "GDS3643", "description": "200 mg/kg", "sample_id": [ "GSM271390", "GSM271391", "GSM271392", "GSM271393" ], "type": "dose", "id": "GDS3643_7" }, { "dataset_id": "GDS3643", "description": "500 mg/kg", "sample_id": [ "GSM271394", "GSM271395", "GSM271396", "GSM271397" ], "type": "dose", "id": "GDS3643_8" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3643", "version": 1.0, "instances": "24", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3643.tab", "compression": "gz" } ], [ [ "GDS3644.tab" ], { "title": "Cerebral palsy: wrist muscles", "description": "Analysis of wrist muscle extensors and flexors of cerebral palsy (CP) patients. CP is an upper motor neuron disease that results in a progressive movement disorder. Muscles of CP patients often become spastic. Results provide insight into the molecular alterations in spastic muscles of CP patients.", "type": "Expression profiling by array", "pubmed_id": "19602279", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE11686", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3644", "description": "cerebral palsy", "sample_id": [ "GSM296826", "GSM296827", "GSM296828", "GSM296829", "GSM296830", "GSM296831", "GSM296832", "GSM296833", "GSM296834", "GSM296835", "GSM296838", "GSM296839" ], "type": "disease state", "id": "GDS3644_1" }, { "dataset_id": "GDS3644", "description": "control", "sample_id": [ "GSM296836", "GSM296837", "GSM296840", "GSM296841" ], "type": "disease state", "id": "GDS3644_2" }, { "dataset_id": "GDS3644", "description": "extensor", "sample_id": [ "GSM296826", "GSM296828", "GSM296830", "GSM296832", "GSM296834", "GSM296836", "GSM296838", "GSM296840" ], "type": "tissue", "id": "GDS3644_3" }, { "dataset_id": "GDS3644", "description": "flexor", "sample_id": [ "GSM296827", "GSM296829", "GSM296831", "GSM296833", "GSM296835", "GSM296837", "GSM296839", "GSM296841" ], "type": "tissue", "id": "GDS3644_4" }, { "dataset_id": "GDS3644", "description": "subject AI", "sample_id": [ "GSM296826", "GSM296827" ], "type": "individual", "id": "GDS3644_5" }, { "dataset_id": "GDS3644", "description": "subject AN", "sample_id": [ "GSM296828", "GSM296829" ], "type": "individual", "id": "GDS3644_6" }, { "dataset_id": "GDS3644", "description": "subject AO", "sample_id": [ "GSM296830", "GSM296831" ], "type": "individual", "id": "GDS3644_7" }, { "dataset_id": "GDS3644", "description": "subject AQ", "sample_id": [ "GSM296832", "GSM296833" ], "type": "individual", "id": "GDS3644_8" }, { "dataset_id": "GDS3644", "description": "subject AT", "sample_id": [ "GSM296834", "GSM296835" ], "type": "individual", "id": "GDS3644_9" }, { "dataset_id": "GDS3644", "description": "subject AZ", "sample_id": [ "GSM296836", "GSM296837" ], "type": "individual", "id": "GDS3644_10" }, { "dataset_id": "GDS3644", "description": "subject BF", "sample_id": [ "GSM296838", "GSM296839" ], "type": "individual", "id": "GDS3644_11" }, { "dataset_id": "GDS3644", "description": "subject BP", "sample_id": [ "GSM296840", "GSM296841" ], "type": "individual", "id": "GDS3644_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3644", "version": 1.0, "instances": "16", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3644.tab", "compression": "gz" } ], [ [ "GDS3646.tab" ], { "title": "Celiac disease: primary leukocytes", "description": "Expression analysis of untouched primary leukocytes from unrelated celiac disease individuals. Results used in conjunction with genome-wide association genotype data provide insight into genetic variation effects on gene expression in primary leukocytes from an immune-mediated disease.", "type": "Expression profiling by array", "pubmed_id": "19128478", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "132", "value_type": "transformed count", "reference_series": "GSE11501", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3646", "description": "celiac disease", "sample_id": [ "GSM289470", "GSM289471", "GSM289472", "GSM289473", "GSM289474", "GSM289475", "GSM289476", "GSM289477", "GSM289478", "GSM289479", "GSM289480", "GSM289481", "GSM289482", "GSM289483", "GSM289484", "GSM289485", "GSM289486", "GSM289487", "GSM289488", "GSM289489", "GSM289490", "GSM289491", "GSM289492", "GSM289493", "GSM289494", "GSM289495", "GSM289496", "GSM289497", "GSM289498", "GSM289499", "GSM289500", "GSM289501", "GSM289502", "GSM289503", "GSM289504", "GSM289505", "GSM289506", "GSM289507", "GSM289508", "GSM289509", "GSM289510", "GSM289511", "GSM289512", "GSM289513", "GSM289514", "GSM289515", "GSM289516", "GSM289517", "GSM289518", "GSM289519", "GSM289520", "GSM289521", "GSM289522", "GSM289523", "GSM289524", "GSM289525", "GSM289526", "GSM289527", "GSM289528", "GSM289529", "GSM289530", "GSM289531", "GSM289532", "GSM289533", "GSM289534", "GSM289535", "GSM289536", "GSM289537", "GSM289538", "GSM289539", "GSM289540", "GSM289541", "GSM289542", "GSM289543", "GSM289544", "GSM289545", "GSM289546", "GSM289547", "GSM289548", "GSM289549", "GSM289550", "GSM289551", "GSM289552", "GSM289553", "GSM289554", "GSM289555", "GSM289556", "GSM289557", "GSM289558", "GSM289559", "GSM289560", "GSM289561", "GSM289562", "GSM289563", "GSM289564", "GSM289565", "GSM289566", "GSM289567", "GSM289568", "GSM289569", "GSM289570", "GSM289571", "GSM289572", "GSM289573", "GSM289574", "GSM289575", "GSM289576", "GSM289577", "GSM289578", "GSM289579" ], "type": "disease state", "id": "GDS3646_1" }, { "dataset_id": "GDS3646", "description": "healthy control", "sample_id": [ "GSM289580", "GSM289581", "GSM289582", "GSM289583", "GSM289584", "GSM289585", "GSM289586", "GSM289587", "GSM289588", "GSM289589", "GSM289590", "GSM289591", "GSM289592", "GSM289593", "GSM289594", "GSM289595", "GSM289596", "GSM289597", "GSM289598", "GSM289599", "GSM289600", "GSM289601" ], "type": "disease state", "id": "GDS3646_2" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS3646", "version": 1.0, "instances": "132", "variables": 18869, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3646.tab", "compression": "gz" } ], [ [ "GDS3647.tab" ], { "title": "Wolfram syndrome model: temporal lobe", "description": "Analysis of temporal lobes of C57B6 and 129S6 animals deficient for the Wfs1 protein. WFS1 gene mutations cause the Wolfram syndrome, an autosomal recessive disorder characterized by diabetes insipidus, diabetes mellitus, optic atrophy, and deafness. WFS1 is expressed in the temporal lobe.", "type": "Expression profiling by array", "pubmed_id": "19293327", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "transformed count", "reference_series": "GSE15293", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3647", "description": "C57B6", "sample_id": [ "GSM382168", "GSM382169", "GSM382170", "GSM382171", "GSM382172", "GSM382173", "GSM382174", "GSM382175", "GSM382176", "GSM382177", "GSM382178", "GSM382179", "GSM382180", "GSM382181", "GSM382182", "GSM382183", "GSM382184", "GSM382185" ], "type": "strain", "id": "GDS3647_1" }, { "dataset_id": "GDS3647", "description": "129S6", "sample_id": [ "GSM382186", "GSM382187", "GSM382188", "GSM382189", "GSM382190", "GSM382191", "GSM382192", "GSM382193", "GSM382194", "GSM382195", "GSM382196", "GSM382197", "GSM382198", "GSM382199", "GSM382200", "GSM382201", "GSM382202", "GSM382203", "GSM382204" ], "type": "strain", "id": "GDS3647_2" }, { "dataset_id": "GDS3647", "description": "wild type", "sample_id": [ "GSM382177", "GSM382178", "GSM382179", "GSM382180", "GSM382181", "GSM382182", "GSM382183", "GSM382184", "GSM382185", "GSM382196", "GSM382197", "GSM382198", "GSM382199", "GSM382200", "GSM382201", "GSM382202", "GSM382203", "GSM382204" ], "type": "genotype/variation", "id": "GDS3647_3" }, { "dataset_id": "GDS3647", "description": "wfs1 null", "sample_id": [ "GSM382168", "GSM382169", "GSM382170", "GSM382171", "GSM382172", "GSM382173", "GSM382174", "GSM382175", "GSM382176", "GSM382186", "GSM382187", "GSM382188", "GSM382189", "GSM382190", "GSM382191", "GSM382192", "GSM382193", "GSM382194", "GSM382195" ], "type": "genotype/variation", "id": "GDS3647_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3647", "version": 1.0, "instances": "37", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3647.tab", "compression": "gz" } ], [ [ "GDS3648.tab" ], { "title": "Cardiomyocyte response to various types of fatty acids in vitro", "description": "Analysis of cardiomyocytes treated with 0.4 mM octanoate, palmitate, stearate, oleate, or linoleate for 24 hours. Studies suggest that distinct fatty acid species are cardiotoxic, while others are cardioprotective. Results provide insight into the molecular basis of these effects on the heart.", "type": "Expression profiling by array", "pubmed_id": "18387886", "platform": "GPL10239", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22517", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE21023", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3648", "description": "control", "sample_id": [ "GSM525196", "GSM525197", "GSM525198", "GSM525199", "GSM525200", "GSM525201", "GSM525202" ], "type": "agent", "id": "GDS3648_1" }, { "dataset_id": "GDS3648", "description": "linoleic acid", "sample_id": [ "GSM525203", "GSM525204", "GSM525205", "GSM525206", "GSM525207", "GSM525208", "GSM525209" ], "type": "agent", "id": "GDS3648_2" }, { "dataset_id": "GDS3648", "description": "octanoic acid", "sample_id": [ "GSM525210", "GSM525211", "GSM525212", "GSM525213", "GSM525214", "GSM525215", "GSM525216", "GSM525217" ], "type": "agent", "id": "GDS3648_3" }, { "dataset_id": "GDS3648", "description": "oleic acid", "sample_id": [ "GSM525218", "GSM525219", "GSM525220", "GSM525221", "GSM525222", "GSM525223", "GSM525224", "GSM525225" ], "type": "agent", "id": "GDS3648_4" }, { "dataset_id": "GDS3648", "description": "palmitic acid", "sample_id": [ "GSM525226", "GSM525227", "GSM525228", "GSM525229", "GSM525230", "GSM525231", "GSM525232", "GSM525233" ], "type": "agent", "id": "GDS3648_5" }, { "dataset_id": "GDS3648", "description": "stearic acid", "sample_id": [ "GSM525234", "GSM525235", "GSM525236", "GSM525237", "GSM525238", "GSM525239", "GSM525240", "GSM525241" ], "type": "agent", "id": "GDS3648_6" } ], "taxid": "10116", "genes": 22228, "aggregation_function": "mean", "name": "GDS3648", "version": 1.0, "instances": "46", "variables": 22230, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3648.tab", "compression": "gz" } ], [ [ "GDS3649.tab" ], { "title": "Proinsulin C-peptide and TGF-beta 1 effect on proximal tubular cell line: time course", "description": "Analysis of HK2 proximal tubular cells (PTCs) treated with C-peptide, TBF-beta 1, or both agents for 18 or 48 hours. C-peptide alleviates TGF-beta 1-mediated phenotypic and morphological changes in PTCs associated with epithelial-mesenchymal transformation (EMT). EMT contributes to renal fibrosis.", "type": "Expression profiling by array", "pubmed_id": "20197308", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE20247", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3649", "description": "control", "sample_id": [ "GSM507414", "GSM507415", "GSM507416", "GSM507417", "GSM507418", "GSM507419" ], "type": "agent", "id": "GDS3649_1" }, { "dataset_id": "GDS3649", "description": "TGF-beta 1", "sample_id": [ "GSM507420", "GSM507421", "GSM507422" ], "type": "agent", "id": "GDS3649_2" }, { "dataset_id": "GDS3649", "description": "C-peptide", "sample_id": [ "GSM507423", "GSM507424", "GSM507425", "GSM507426", "GSM507427", "GSM507428" ], "type": "agent", "id": "GDS3649_3" }, { "dataset_id": "GDS3649", "description": "TGF-beta 1 and C-peptide", "sample_id": [ "GSM507429", "GSM507430", "GSM507431" ], "type": "agent", "id": "GDS3649_4" }, { "dataset_id": "GDS3649", "description": "18 h", "sample_id": [ "GSM507417", "GSM507418", "GSM507419", "GSM507426", "GSM507427", "GSM507428" ], "type": "time", "id": "GDS3649_5" }, { "dataset_id": "GDS3649", "description": "48 h", "sample_id": [ "GSM507414", "GSM507415", "GSM507416", "GSM507420", "GSM507421", "GSM507422", "GSM507423", "GSM507424", "GSM507425", "GSM507429", "GSM507430", "GSM507431" ], "type": "time", "id": "GDS3649_6" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS3649", "version": 1.0, "instances": "18", "variables": 39534, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3649.tab", "compression": "gz" } ], [ [ "GDS3653.tab" ], { "title": "ob/ob liver response to low doses of leptin", "description": "Analysis of liver from ob/ob animals treated with 12.5 or 25 ng/hour of leptin. Treatment of ob/ob animals with 12.5 ng/hour of leptin lowers blood glucose and that with 25 ng/hour normalizes plasma glucose and insulin without reducing body weight.", "type": "Expression profiling by array", "pubmed_id": "20074524", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE19185", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3653", "description": "untreated", "sample_id": [ "GSM475609", "GSM475610", "GSM475611" ], "type": "agent", "id": "GDS3653_1" }, { "dataset_id": "GDS3653", "description": "leptin", "sample_id": [ "GSM475612", "GSM475613", "GSM475614", "GSM475615", "GSM475616" ], "type": "agent", "id": "GDS3653_2" }, { "dataset_id": "GDS3653", "description": "0 ng/h", "sample_id": [ "GSM475609", "GSM475610", "GSM475611" ], "type": "dose", "id": "GDS3653_3" }, { "dataset_id": "GDS3653", "description": "12.5 ng/h", "sample_id": [ "GSM475612", "GSM475613" ], "type": "dose", "id": "GDS3653_4" }, { "dataset_id": "GDS3653", "description": "25 ng/h", "sample_id": [ "GSM475614", "GSM475615", "GSM475616" ], "type": "dose", "id": "GDS3653_5" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3653", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3653.tab", "compression": "gz" } ], [ [ "GDS3654.tab" ], { "title": "Sphingosine 1-phosphate lyase deficiency effect on liver", "description": "Analysis of liver of animals lacking sphingosine 1-phosphate lyase (S1P). In addition to the expected increase of sphingoid base phosphates, other sphingolipids are elevated in the sera and livers of S1P deficient animals. Results provide insight into the role of S1P in lipid metabolic pathways.", "type": "Expression profiling by array", "pubmed_id": [ "20097939", "21173151" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE18745", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3654", "description": "wild type", "sample_id": [ "GSM465509", "GSM465512", "GSM465514" ], "type": "genotype/variation", "id": "GDS3654_1" }, { "dataset_id": "GDS3654", "description": "S1P null", "sample_id": [ "GSM465510", "GSM465511", "GSM465513" ], "type": "genotype/variation", "id": "GDS3654_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3654", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3654.tab", "compression": "gz" } ], [ [ "GDS3655.tab" ], { "title": "Post-ischemic heart failure model", "description": "Analysis of C57BL/6 hearts 7 weeks after inducing myocardial infarction. Myocardial infarcts were produced by ligation of the descending branch of the left coronary artery. Results provide insight into the molecular pathogenesis of post-ischemic heart failure.", "type": "Expression profiling by array", "pubmed_id": "20209379", "platform": "GPL5371", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33600", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log2 ratio", "reference_series": "GSE18703", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3655", "description": "control", "sample_id": [ "GSM464361", "GSM464362", "GSM464404", "GSM464405" ], "type": "disease state", "id": "GDS3655_1" }, { "dataset_id": "GDS3655", "description": "myocardial infarction", "sample_id": [ "GSM464406", "GSM464407", "GSM464408", "GSM464409" ], "type": "disease state", "id": "GDS3655_2" } ], "taxid": "10090", "genes": 15581, "aggregation_function": "mean", "name": "GDS3655", "version": 1.0, "instances": "8", "variables": 15583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3655.tab", "compression": "gz" } ], [ [ "GDS3656.tab" ], { "title": "Folic acid effect on endothelial progenitor cells of type 1 diabetes patients", "description": "Analysis of endothelial progenitor cells (EPCs) from patients with type 1 diabetes (T1D) before and 4 weeks of dietary folic acid (FA) supplementation. EPCs are involved in vascular wall repair. T1D results in reduced circulating EPCs. Results provide insight into the effect of FA on EPC function.", "type": "Expression profiling by array", "pubmed_id": "19706161", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE17635", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3656", "description": "untreated", "sample_id": [ "GSM440157", "GSM440158", "GSM440159", "GSM440160", "GSM440161", "GSM440162", "GSM440163", "GSM440164", "GSM440165", "GSM440166", "GSM440167", "GSM440178", "GSM440179", "GSM440180", "GSM440181", "GSM440182", "GSM440183", "GSM440184", "GSM440185", "GSM440186", "GSM440187", "GSM440188" ], "type": "agent", "id": "GDS3656_1" }, { "dataset_id": "GDS3656", "description": "folic acid", "sample_id": [ "GSM440168", "GSM440169", "GSM440170", "GSM440171", "GSM440172", "GSM440173", "GSM440174", "GSM440175", "GSM440176", "GSM440177" ], "type": "agent", "id": "GDS3656_2" }, { "dataset_id": "GDS3656", "description": "type 1 diabetes", "sample_id": [ "GSM440157", "GSM440158", "GSM440159", "GSM440160", "GSM440161", "GSM440162", "GSM440163", "GSM440164", "GSM440165", "GSM440166", "GSM440167", "GSM440168", "GSM440169", "GSM440170", "GSM440171", "GSM440172", "GSM440173", "GSM440174", "GSM440175", "GSM440176", "GSM440177" ], "type": "disease state", "id": "GDS3656_3" }, { "dataset_id": "GDS3656", "description": "healthy", "sample_id": [ "GSM440178", "GSM440179", "GSM440180", "GSM440181", "GSM440182", "GSM440183", "GSM440184", "GSM440185", "GSM440186", "GSM440187", "GSM440188" ], "type": "disease state", "id": "GDS3656_4" }, { "dataset_id": "GDS3656", "description": "control", "sample_id": [ "GSM440178", "GSM440179", "GSM440180", "GSM440181", "GSM440182", "GSM440183", "GSM440184", "GSM440185", "GSM440186", "GSM440187", "GSM440188" ], "type": "individual", "id": "GDS3656_5" }, { "dataset_id": "GDS3656", "description": "patient 1", "sample_id": [ "GSM440157", "GSM440168" ], "type": "individual", "id": "GDS3656_6" }, { "dataset_id": "GDS3656", "description": "patient 2", "sample_id": [ "GSM440158", "GSM440169" ], "type": "individual", "id": "GDS3656_7" }, { "dataset_id": "GDS3656", "description": "patient 3", "sample_id": [ "GSM440159", "GSM440170" ], "type": "individual", "id": "GDS3656_8" }, { "dataset_id": "GDS3656", "description": "patient 4", "sample_id": [ "GSM440160", "GSM440171" ], "type": "individual", "id": "GDS3656_9" }, { "dataset_id": "GDS3656", "description": "patient 5", "sample_id": [ "GSM440161", "GSM440172" ], "type": "individual", "id": "GDS3656_10" }, { "dataset_id": "GDS3656", "description": "patient 6", "sample_id": [ "GSM440162", "GSM440173" ], "type": "individual", "id": "GDS3656_11" }, { "dataset_id": "GDS3656", "description": "patient 7", "sample_id": [ "GSM440163", "GSM440174" ], "type": "individual", "id": "GDS3656_12" }, { "dataset_id": "GDS3656", "description": "patient 8", "sample_id": [ "GSM440164", "GSM440175" ], "type": "individual", "id": "GDS3656_13" }, { "dataset_id": "GDS3656", "description": "patient 9", "sample_id": [ "GSM440165", "GSM440176" ], "type": "individual", "id": "GDS3656_14" }, { "dataset_id": "GDS3656", "description": "patient 10", "sample_id": [ "GSM440166", "GSM440177" ], "type": "individual", "id": "GDS3656_15" }, { "dataset_id": "GDS3656", "description": "patient 11", "sample_id": [ "GSM440167" ], "type": "individual", "id": "GDS3656_16" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS3656", "version": 1.0, "instances": "32", "variables": 22010, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3656.tab", "compression": "gz" } ], [ [ "GDS3657.tab" ], { "title": "Diabetic retina", "description": "Analysis of retina from adult CD-1 animals injected with streptozotocin on three successive days. This drug selectively destroys the beta-islet cells of the pancreas thereby inducing diabetes. Results provide insight into the molecular mechanisms underlying neural degeneration of the retina.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE12610", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3657", "description": "control", "sample_id": [ "GSM315895", "GSM315896" ], "type": "disease state", "id": "GDS3657_1" }, { "dataset_id": "GDS3657", "description": "diabetes", "sample_id": [ "GSM315892", "GSM315893", "GSM315894" ], "type": "disease state", "id": "GDS3657_2" }, { "dataset_id": "GDS3657", "description": "3-4 wks", "sample_id": [ "GSM315894" ], "type": "time", "id": "GDS3657_3" }, { "dataset_id": "GDS3657", "description": "5 wks", "sample_id": [ "GSM315892", "GSM315893" ], "type": "time", "id": "GDS3657_4" }, { "dataset_id": "GDS3657", "description": "n/a", "sample_id": [ "GSM315895", "GSM315896" ], "type": "time", "id": "GDS3657_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3657", "version": 1.0, "instances": "5", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3657.tab", "compression": "gz" } ], [ [ "GDS3658.tab" ], { "title": "Coronary collateral artery growth: monocytes", "description": "Analysis of monocytes from patients with chronic coronary occlusions who were dichotomized as sufficient or insufficient collateral responders following coronary intervention. Results of in vitro stimulation of monocytes with LPS provide insight into the role of IFN-beta in collateral artery growth.", "type": "Expression profiling by array", "pubmed_id": [ "20736166", "21831908" ], "platform": "GPL5104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "20589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE13290", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3658", "description": "insufficient coronary collateralization", "sample_id": [ "GSM335353", "GSM335372", "GSM335373", "GSM335375", "GSM335378", "GSM335381", "GSM335382", "GSM335385", "GSM335386", "GSM335388" ], "type": "disease state", "id": "GDS3658_1" }, { "dataset_id": "GDS3658", "description": "sufficient coronary collateralization", "sample_id": [ "GSM335371", "GSM335374", "GSM335376", "GSM335377", "GSM335379", "GSM335380", "GSM335383", "GSM335384", "GSM335387", "GSM335389" ], "type": "disease state", "id": "GDS3658_2" } ], "taxid": "9606", "genes": 18739, "aggregation_function": "mean", "name": "GDS3658", "version": 1.0, "instances": "20", "variables": 18741, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3658.tab", "compression": "gz" } ], [ [ "GDS3659.tab" ], { "title": "Transcriptional regulator Fog2 knockout effect on adult heart", "description": "Analysis of heart ventricles of 6-week-old animals deficient for zinc finger transcriptional regulator FOG2 (friend of Gata 2, also known as ZFPM2). Fog2-null adults have severely depressed ventricular function and die at 8-14 weeks. Results provide insight into the role of Fog2 in the adult heart.", "type": "Expression profiling by array", "pubmed_id": "19411759", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE15078", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3659", "description": "control", "sample_id": [ "GSM377182", "GSM377183", "GSM377184" ], "type": "genotype/variation", "id": "GDS3659_1" }, { "dataset_id": "GDS3659", "description": "Fog2 knockout", "sample_id": [ "GSM377185", "GSM377186", "GSM377187" ], "type": "genotype/variation", "id": "GDS3659_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3659", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3659.tab", "compression": "gz" } ], [ [ "GDS366.tab" ], { "title": "Necrotizing enterocolitis development", "description": "Rodent model of necrotizing enterocolitis (NEC) used to study effect of formula feeding and hypoxia on NEC development. Newborn rats either breast fed, or formula-fed with hypoxic stress. Three pups sacrificed daily for 5 days. Terminal ileum examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE491", "order": "none", "update_date": "Nov 15 2005", "subsets": [ { "dataset_id": "GDS366", "description": "control unfed newborn", "sample_id": [ "GSM7609" ], "type": "protocol", "id": "GDS366_1" }, { "dataset_id": "GDS366", "description": "breast fed", "sample_id": [ "GSM7602", "GSM7603", "GSM7604", "GSM7605", "GSM7606", "GSM7607", "GSM7608" ], "type": "protocol", "id": "GDS366_2" }, { "dataset_id": "GDS366", "description": "formula fed and hypoxia", "sample_id": [ "GSM7610", "GSM7611", "GSM7612", "GSM7613", "GSM7614", "GSM7615", "GSM7616", "GSM7617", "GSM7618", "GSM7619" ], "type": "protocol", "id": "GDS366_3" }, { "dataset_id": "GDS366", "description": "0 day", "sample_id": [ "GSM7609" ], "type": "time", "id": "GDS366_4" }, { "dataset_id": "GDS366", "description": "1 day", "sample_id": [ "GSM7602", "GSM7603", "GSM7610", "GSM7611", "GSM7612" ], "type": "time", "id": "GDS366_5" }, { "dataset_id": "GDS366", "description": "2 day", "sample_id": [ "GSM7604", "GSM7605", "GSM7606", "GSM7613", "GSM7614", "GSM7615" ], "type": "time", "id": "GDS366_6" }, { "dataset_id": "GDS366", "description": "3 day", "sample_id": [ "GSM7607", "GSM7608", "GSM7616", "GSM7617", "GSM7618" ], "type": "time", "id": "GDS366_7" }, { "dataset_id": "GDS366", "description": "4 day", "sample_id": [ "GSM7619" ], "type": "time", "id": "GDS366_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS366", "version": 1.0, "instances": "18", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS366.tab", "compression": "gz" } ], [ [ "GDS3660.tab" ], { "title": "Particulate matter effect on dilated cardiomyopathy model: lung and heart", "description": "Analysis of lung and heart left ventricle from CD-1 animals with congestive heart failure (CHF) exposed to ambient particulate matter (PM). Results provide insight into potential mechanistic links between PM exposure and increased cardiovascular morbidity and mortality observed in people with CHF.", "type": "Expression profiling by array", "pubmed_id": "22108299", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE17478", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3660", "description": "lung", "sample_id": [ "GSM435909", "GSM435910", "GSM435911", "GSM435912", "GSM435913", "GSM435914", "GSM435915", "GSM435916", "GSM435917", "GSM435918", "GSM435919", "GSM435920" ], "type": "tissue", "id": "GDS3660_1" }, { "dataset_id": "GDS3660", "description": "heart left ventricle", "sample_id": [ "GSM435921", "GSM435922", "GSM435923", "GSM435924", "GSM435925", "GSM435926", "GSM435927", "GSM435928", "GSM435929", "GSM435930", "GSM435931", "GSM435932" ], "type": "tissue", "id": "GDS3660_2" }, { "dataset_id": "GDS3660", "description": "wild type", "sample_id": [ "GSM435909", "GSM435910", "GSM435911", "GSM435912", "GSM435913", "GSM435914", "GSM435921", "GSM435922", "GSM435923", "GSM435924", "GSM435925", "GSM435926" ], "type": "genotype/variation", "id": "GDS3660_3" }, { "dataset_id": "GDS3660", "description": "transcription factor CREB mutant", "sample_id": [ "GSM435915", "GSM435916", "GSM435917", "GSM435918", "GSM435919", "GSM435920", "GSM435927", "GSM435928", "GSM435929", "GSM435930", "GSM435931", "GSM435932" ], "type": "genotype/variation", "id": "GDS3660_4" }, { "dataset_id": "GDS3660", "description": "control", "sample_id": [ "GSM435909", "GSM435910", "GSM435911", "GSM435915", "GSM435916", "GSM435917", "GSM435921", "GSM435922", "GSM435923", "GSM435927", "GSM435928", "GSM435929" ], "type": "agent", "id": "GDS3660_5" }, { "dataset_id": "GDS3660", "description": "particulate matter", "sample_id": [ "GSM435912", "GSM435913", "GSM435914", "GSM435918", "GSM435919", "GSM435920", "GSM435924", "GSM435925", "GSM435926", "GSM435930", "GSM435931", "GSM435932" ], "type": "agent", "id": "GDS3660_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3660", "version": 1.0, "instances": "24", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3660.tab", "compression": "gz" } ], [ [ "GDS3661.tab" ], { "title": "Hypertensive heart failure model", "description": "Analysis of heart from age-matched, spontaneously hypertensive animals with and without heart failure (HF). Results provide insight into the molecular mechanisms underlying the transition to hypertensive HF.", "type": "Expression profiling by array", "pubmed_id": "20006699", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE19210", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3661", "description": "heart failure", "sample_id": [ "GSM476048", "GSM476049", "GSM476050", "GSM476051", "GSM476052", "GSM476053" ], "type": "disease state", "id": "GDS3661_1" }, { "dataset_id": "GDS3661", "description": "control", "sample_id": [ "GSM476054", "GSM476055", "GSM476056", "GSM476057", "GSM476058", "GSM476059" ], "type": "disease state", "id": "GDS3661_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3661", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3661.tab", "compression": "gz" } ], [ [ "GDS3662.tab" ], { "title": "A2B adenosine receptor deficient heart response to ischemic preconditioning and subsequent reperfusion", "description": "Analysis of heart of A2B adenosine receptor (A2BAR) deficient animals subjected to ischemic preconditioning (IP) and subsequent reperfusion. IP induces cardioprotection to prolonged ischemia. A2BAR deficient animals do not respond to IP and have increased susceptibility to acute myocardial ischemia.", "type": "Expression profiling by array", "pubmed_id": "22504483", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE19875", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS3662", "description": "control", "sample_id": [ "GSM496718", "GSM496719", "GSM496720", "GSM496724", "GSM496725", "GSM496726" ], "type": "protocol", "id": "GDS3662_1" }, { "dataset_id": "GDS3662", "description": "ischemic preconditioning", "sample_id": [ "GSM496715", "GSM496716", "GSM496717", "GSM496721", "GSM496722", "GSM496723" ], "type": "protocol", "id": "GDS3662_2" }, { "dataset_id": "GDS3662", "description": "wild type", "sample_id": [ "GSM496721", "GSM496722", "GSM496723", "GSM496724", "GSM496725", "GSM496726" ], "type": "genotype/variation", "id": "GDS3662_3" }, { "dataset_id": "GDS3662", "description": "A2BAR null", "sample_id": [ "GSM496715", "GSM496716", "GSM496717", "GSM496718", "GSM496719", "GSM496720" ], "type": "genotype/variation", "id": "GDS3662_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3662", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3662.tab", "compression": "gz" } ], [ [ "GDS3663.tab" ], { "title": "Zinc finger transcription factor Gata4 inactivation effect on endothelial-derived cells", "description": "Analysis of atrioventricular canals (AVC) from E9.5 hearts with endocardial-restricted Gata4 inactivation. The mutant endothelium failed to undergo epithelial-mesenchymal transition (EMT), resulting in hypocellular AV cushions. Results provide insight into the role of Gata4 in endocardial cell EMT.", "type": "Expression profiling by array", "pubmed_id": "16914500", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE5298", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3663", "description": "control", "sample_id": [ "GSM120064", "GSM120065", "GSM120066", "GSM120067" ], "type": "genotype/variation", "id": "GDS3663_1" }, { "dataset_id": "GDS3663", "description": "Gata4 inactivation", "sample_id": [ "GSM120068", "GSM120069", "GSM120070", "GSM120071" ], "type": "genotype/variation", "id": "GDS3663_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3663", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3663.tab", "compression": "gz" } ], [ [ "GDS3664.tab" ], { "title": "Suppressor of cytokine signaling 3 expression effect on skeletal muscles", "description": "Analysis of skeletal muscle of transgenics constitutively expressing suppressor of cytokine signaling 3 (SOCS-3). SOCS proteins are feedback inhibitors of signaling pathways induced by stimuli such as hormones and cytokines. Results provide insight into the role of SOCS-3 in the skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "19672574", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE17063", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3664", "description": "SOCS-3 transgenic", "sample_id": [ "GSM426840", "GSM426841", "GSM426842" ], "type": "genotype/variation", "id": "GDS3664_1" }, { "dataset_id": "GDS3664", "description": "wild type", "sample_id": [ "GSM426843", "GSM426844", "GSM426845" ], "type": "genotype/variation", "id": "GDS3664_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3664", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3664.tab", "compression": "gz" } ], [ [ "GDS3665.tab" ], { "title": "Visceral adipose tissues of obese diabetic women", "description": "Analysis of visceral adipose omentum tissues of obese women with type 2 diabetes mellitus. Age and BMI-matched glucose-tolerant women used as controls.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2986", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE16415", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3665", "description": "diabetes", "sample_id": [ "GSM412612", "GSM412613", "GSM412614", "GSM412615", "GSM412616" ], "type": "disease state", "id": "GDS3665_1" }, { "dataset_id": "GDS3665", "description": "control", "sample_id": [ "GSM412607", "GSM412608", "GSM412609", "GSM412610", "GSM412611" ], "type": "disease state", "id": "GDS3665_2" } ], "taxid": "9606", "genes": 30389, "aggregation_function": "mean", "name": "GDS3665", "version": 1.0, "instances": "10", "variables": 30391, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3665.tab", "compression": "gz" } ], [ [ "GDS3666.tab" ], { "title": "SIRT1 deficiency effect on the liver", "description": "Analysis of liver deficient for SIRT1. SIRT1, a NAD+-dependent protein deacetylase, is an important regulator of energy homeostasis in response to nutrient availability. Results provide insight into the role of hepatic SIRT1 in fatty acid metabolsim.", "type": "Expression profiling by array", "pubmed_id": "19356714", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE14921", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3666", "description": "control", "sample_id": [ "GSM371988", "GSM371989", "GSM371990" ], "type": "genotype/variation", "id": "GDS3666_1" }, { "dataset_id": "GDS3666", "description": "SIRT1 null", "sample_id": [ "GSM371991", "GSM371992", "GSM371993" ], "type": "genotype/variation", "id": "GDS3666_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS3666", "version": 1.0, "instances": "6", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3666.tab", "compression": "gz" } ], [ [ "GDS3667.tab" ], { "title": "Transgenic model of selective ATF6 activation: heart", "description": "Analysis of heart left ventricle from ATF6-MER transgenic (TG) males, treated with tamoxifen to confer activation to ATF6-MER. Activating ATF6 protects the heart of TG animals from endoplasmic reticulum stress. Results provide insight into molecular mechanisms underlying this protective effect.", "type": "Expression profiling by array", "pubmed_id": "18319259", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE8322", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3667", "description": "ATF6-MER transgenic", "sample_id": [ "GSM205922", "GSM205923", "GSM206335", "GSM206348", "GSM206349", "GSM206350" ], "type": "genotype/variation", "id": "GDS3667_1" }, { "dataset_id": "GDS3667", "description": "nontransgenic", "sample_id": [ "GSM206351", "GSM206352", "GSM206353", "GSM206354", "GSM206355", "GSM206356" ], "type": "genotype/variation", "id": "GDS3667_2" }, { "dataset_id": "GDS3667", "description": "tamoxifen", "sample_id": [ "GSM205922", "GSM205923", "GSM206335", "GSM206351", "GSM206352", "GSM206353" ], "type": "agent", "id": "GDS3667_3" }, { "dataset_id": "GDS3667", "description": "control", "sample_id": [ "GSM206348", "GSM206349", "GSM206350", "GSM206354", "GSM206355", "GSM206356" ], "type": "agent", "id": "GDS3667_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3667", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3667.tab", "compression": "gz" } ], [ [ "GDS3668.tab" ], { "title": "Familial hypercholesterolemia and atherosclerosis: monocytes", "description": "Analysis of monocytes (MO) from familial hypercholesterolemia (FH) patients. FH patients have a defective or missing LDLR resulting in atherosclerosis. Atherosclerotic lesions often contain MO-derived, lipid-laden macrophages. Results provide insight into the role of MO in onset of atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "19040724", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE6054", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3668", "description": "heterozygous FH", "sample_id": [ "GSM140232", "GSM140236", "GSM140239", "GSM140240", "GSM140241", "GSM140257" ], "type": "disease state", "id": "GDS3668_1" }, { "dataset_id": "GDS3668", "description": "homozygous FH", "sample_id": [ "GSM140233", "GSM140234", "GSM140235", "GSM140237" ], "type": "disease state", "id": "GDS3668_2" }, { "dataset_id": "GDS3668", "description": "control", "sample_id": [ "GSM140244", "GSM140245", "GSM140246", "GSM140247", "GSM140248", "GSM140249", "GSM140250", "GSM140251", "GSM140252", "GSM140253", "GSM140254", "GSM140255", "GSM140256" ], "type": "disease state", "id": "GDS3668_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3668", "version": 1.0, "instances": "23", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3668.tab", "compression": "gz" } ], [ [ "GDS3669.tab" ], { "title": "Familial hypercholesterolemia and atherosclerosis: T lymphocytes", "description": "Analysis of T cells from familial hypercholesterolemia (FH) patients. FH patients have a defective or missing LDLR resulting in atherosclerosis. In response to initial events of atherosclerosis, T cells interact with vessel wall. Results provide insight into the role of T cells in atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE6088", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3669", "description": "heterozygous FH", "sample_id": [ "GSM141543", "GSM141546", "GSM141548", "GSM141549", "GSM141550", "GSM141551", "GSM141566" ], "type": "disease state", "id": "GDS3669_1" }, { "dataset_id": "GDS3669", "description": "homozygous FH", "sample_id": [ "GSM141544", "GSM141545", "GSM141547" ], "type": "disease state", "id": "GDS3669_2" }, { "dataset_id": "GDS3669", "description": "control", "sample_id": [ "GSM141552", "GSM141553", "GSM141554", "GSM141555", "GSM141556", "GSM141557", "GSM141558", "GSM141559", "GSM141560", "GSM141561", "GSM141562", "GSM141563", "GSM141564" ], "type": "disease state", "id": "GDS3669_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3669", "version": 1.0, "instances": "23", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3669.tab", "compression": "gz" } ], [ [ "GDS367.tab" ], { "title": "Skeletal repair in non-union fractures (HG-U95A)", "description": "Identification of mechanisms leading to lack of skeletal repair in non-union fractures. Non-union fractures do not heal six months after injury and may cause advanced arthritis or loss of limb function. Normal and non-union callous bone samples examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE494", "order": "none", "update_date": "Jul 02 2003", "subsets": [ { "dataset_id": "GDS367", "description": "non-union skeletal fracture", "sample_id": [ "GSM7625", "GSM7628" ], "type": "disease state", "id": "GDS367_1" }, { "dataset_id": "GDS367", "description": "normal skeletal fracture", "sample_id": [ "GSM7631", "GSM7632" ], "type": "disease state", "id": "GDS367_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS367", "version": 1.0, "instances": "4", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS367.tab", "compression": "gz" } ], [ [ "GDS3670.tab" ], { "title": "Hypochlorous acid effect on macrophage cell line: dose response", "description": "Analysis of macrophage RAW 264.7 cells treated with up to 3.5 mM hypochlorous acid (HOCl). HOCl exposure can occur from chlorine gas inhalation or from endogenous sources of HOCl, such as respiratory burst by phagocytes. Results provide insight into the dose-dependent molecular response to HOCl.", "type": "Expression profiling by array", "pubmed_id": "19376150", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE15457", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3670", "description": "0 mM HOCl", "sample_id": [ "GSM387601", "GSM387602", "GSM387605", "GSM387606" ], "type": "dose", "id": "GDS3670_1" }, { "dataset_id": "GDS3670", "description": "0.14 mM HOCl", "sample_id": [ "GSM387645", "GSM387646", "GSM387647" ], "type": "dose", "id": "GDS3670_2" }, { "dataset_id": "GDS3670", "description": "0.35 mM HOCl", "sample_id": [ "GSM387648", "GSM387649", "GSM387676" ], "type": "dose", "id": "GDS3670_3" }, { "dataset_id": "GDS3670", "description": "0.7 mM HOCl", "sample_id": [ "GSM387677", "GSM387678", "GSM387679" ], "type": "dose", "id": "GDS3670_4" }, { "dataset_id": "GDS3670", "description": "1.4 mM HOCl", "sample_id": [ "GSM387698", "GSM387699", "GSM387700" ], "type": "dose", "id": "GDS3670_5" }, { "dataset_id": "GDS3670", "description": "2.1 mM HOCl", "sample_id": [ "GSM387701", "GSM387702", "GSM387703" ], "type": "dose", "id": "GDS3670_6" }, { "dataset_id": "GDS3670", "description": "2.8 mM HOCl", "sample_id": [ "GSM387713", "GSM387714", "GSM387716" ], "type": "dose", "id": "GDS3670_7" }, { "dataset_id": "GDS3670", "description": "3.5 mM HOCl", "sample_id": [ "GSM387750", "GSM387751", "GSM387752" ], "type": "dose", "id": "GDS3670_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3670", "version": 1.0, "instances": "25", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3670.tab", "compression": "gz" } ], [ [ "GDS3671.tab" ], { "title": "Maternal hypercholesterolemia effect on offspring: carotid a", "description": "Analysis of carotid artery from 20 week old, heterozygous apolipoprotein E deficient (apoE-/+) progeny of apoE+/+ or apoE-/- mothers. Results provide insight into whether in utero exposure to maternal atherosclerotic risk factors increases susceptibility to cardiovascular disease in adult life.", "type": "Expression profiling by array", "pubmed_id": "17656671", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE6134", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3671", "description": "wildtype (apoE+/+) mother", "sample_id": [ "GSM142367", "GSM142369", "GSM142370" ], "type": "genotype/variation", "id": "GDS3671_1" }, { "dataset_id": "GDS3671", "description": "apolipoprotein E-deficient (apoE-/-) mother", "sample_id": [ "GSM142372", "GSM142374", "GSM142376", "GSM142380" ], "type": "genotype/variation", "id": "GDS3671_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3671", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3671.tab", "compression": "gz" } ], [ [ "GDS3672.tab" ], { "title": "Hypertension model: aorta", "description": "Analysis of aorta of genetically hypotensive BPL, normotensive BPN, and hypertensive BPH inbred strains. Results provide insight into the molecular pathways affected by hypertension in the aorta.", "type": "Expression profiling by array", "pubmed_id": "20587620", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE19817", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3672", "description": "hypertensive", "sample_id": [ "GSM493487", "GSM493488", "GSM493489", "GSM493490", "GSM493491", "GSM493492", "GSM493493", "GSM493494", "GSM493495" ], "type": "disease state", "id": "GDS3672_1" }, { "dataset_id": "GDS3672", "description": "hypotensive", "sample_id": [ "GSM493496", "GSM493497", "GSM493498", "GSM493499", "GSM493500", "GSM493501", "GSM493502", "GSM493503", "GSM493504" ], "type": "disease state", "id": "GDS3672_2" }, { "dataset_id": "GDS3672", "description": "normotensive", "sample_id": [ "GSM493505", "GSM493506", "GSM493507", "GSM493508", "GSM493509" ], "type": "disease state", "id": "GDS3672_3" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS3672", "version": 1.0, "instances": "23", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3672.tab", "compression": "gz" } ], [ [ "GDS3673.tab" ], { "title": "Hypertension model: heart", "description": "Analysis of heart of genetically hypotensive BPL, normotensive BPN, and hypertensive BPH inbred strains. Results provide insight into the molecular pathways affected by hypertension in the heart.", "type": "Expression profiling by array", "pubmed_id": "20587620", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE19817", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3673", "description": "hypertension", "sample_id": [ "GSM493525", "GSM493526", "GSM493527", "GSM493528", "GSM493529" ], "type": "disease state", "id": "GDS3673_1" }, { "dataset_id": "GDS3673", "description": "hypotension", "sample_id": [ "GSM493530", "GSM493531", "GSM493532", "GSM493533", "GSM493534" ], "type": "disease state", "id": "GDS3673_2" }, { "dataset_id": "GDS3673", "description": "normotension", "sample_id": [ "GSM493535", "GSM493536", "GSM493537", "GSM493538", "GSM493539" ], "type": "disease state", "id": "GDS3673_3" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS3673", "version": 1.0, "instances": "15", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3673.tab", "compression": "gz" } ], [ [ "GDS3674.tab" ], { "title": "Hypertension model: liver", "description": "Analysis of liver of genetically hypotensive BPL, normotensive BPN, and hypertensive BPH inbred strains. Results provide insight into the molecular pathways affected by hypertension in the liver.", "type": "Expression profiling by array", "pubmed_id": "20587620", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE19817", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3674", "description": "hypotension", "sample_id": [ "GSM493559", "GSM493560", "GSM493561", "GSM493562", "GSM493563" ], "type": "disease state", "id": "GDS3674_1" }, { "dataset_id": "GDS3674", "description": "hypertension", "sample_id": [ "GSM493554", "GSM493555", "GSM493556", "GSM493557", "GSM493558" ], "type": "disease state", "id": "GDS3674_2" }, { "dataset_id": "GDS3674", "description": "normotension", "sample_id": [ "GSM493564", "GSM493565", "GSM493566", "GSM493567", "GSM493568" ], "type": "disease state", "id": "GDS3674_3" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS3674", "version": 1.0, "instances": "15", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3674.tab", "compression": "gz" } ], [ [ "GDS3675.tab" ], { "title": "Hypertension model: kidney", "description": "Analysis of kidney of genetically hypotensive BPL, normotensive BPN, and hypertensive BPH inbred strains. Results provide insight into the molecular pathways affected by hypertension in the kidney.", "type": "Expression profiling by array", "pubmed_id": "20587620", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE19817", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3675", "description": "hypertension", "sample_id": [ "GSM493540", "GSM493541", "GSM493542", "GSM493543", "GSM493544" ], "type": "disease state", "id": "GDS3675_1" }, { "dataset_id": "GDS3675", "description": "hypotension", "sample_id": [ "GSM493545", "GSM493546", "GSM493547", "GSM493548" ], "type": "disease state", "id": "GDS3675_2" }, { "dataset_id": "GDS3675", "description": "normotension", "sample_id": [ "GSM493549", "GSM493550", "GSM493551", "GSM493552", "GSM493553" ], "type": "disease state", "id": "GDS3675_3" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS3675", "version": 1.0, "instances": "14", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3675.tab", "compression": "gz" } ], [ [ "GDS3676.tab" ], { "title": "Quercetin effect on CD14+ monocyte", "description": "Analysis of CD14+ monocytes from individuals on a diet supplemented with quercetin for 2 weeks. Quercetin is a flavonoid from plant extracts used as a nutritional supplement, and has reported benefits ranging from anti-carcinogenic properties to reduced risk of cardiovascular disease.", "type": "Expression profiling by array", "pubmed_id": "20416132", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE13899", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3676", "description": "untreated", "sample_id": [ "GSM350084", "GSM350085", "GSM350086" ], "type": "agent", "id": "GDS3676_1" }, { "dataset_id": "GDS3676", "description": "quercetin", "sample_id": [ "GSM350087", "GSM350088", "GSM350089" ], "type": "agent", "id": "GDS3676_2" }, { "dataset_id": "GDS3676", "description": "subject 1", "sample_id": [ "GSM350084", "GSM350087" ], "type": "individual", "id": "GDS3676_3" }, { "dataset_id": "GDS3676", "description": "subject 2", "sample_id": [ "GSM350085", "GSM350088" ], "type": "individual", "id": "GDS3676_4" }, { "dataset_id": "GDS3676", "description": "subject 3", "sample_id": [ "GSM350086", "GSM350089" ], "type": "individual", "id": "GDS3676_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3676", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3676.tab", "compression": "gz" } ], [ [ "GDS3677.tab" ], { "title": "High-fat-diet model: liver", "description": "Analysis of liver from obesity-prone (OP) Wistar males with nonalcoholic fatty liver disease (NAFLD) induced by a 16 week, high-fat diet (HFD). Obesity-resistant (OR) males, fed an identical diet, were also examined. Results provide insight into molecular mechanisms underlying NAFLD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "19913842", "platform": "GPL4294", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12288", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE11492", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3677", "description": "obesity-prone", "sample_id": [ "GSM271483", "GSM271484", "GSM271485", "GSM271487" ], "type": "disease state", "id": "GDS3677_1" }, { "dataset_id": "GDS3677", "description": "obesity-resistant", "sample_id": [ "GSM271486", "GSM271488", "GSM271489", "GSM271490" ], "type": "disease state", "id": "GDS3677_2" } ], "taxid": "10116", "genes": 8997, "aggregation_function": "mean", "name": "GDS3677", "version": 1.0, "instances": "8", "variables": 8999, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3677.tab", "compression": "gz" } ], [ [ "GDS3678.tab" ], { "title": "Saturated fatty acid rich diet effect on risk of metabolic syndrome: adipose tissue", "description": "Analysis of adipose tissue from moderately overweight subjects who consumed a saturated fat (SFA)-rich diet for 2 weeks, followed by SFA or monounsaturated (MUFA)-rich intervention diets for 8 weeks. Results provide insight into role of dietary fat on the risk of developing metabolic syndrome.", "type": "Expression profiling by array", "pubmed_id": "19828712", "platform": "GPL7020", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "23941", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE14954", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3678", "description": "saturated fatty acid rich diet", "sample_id": [ "GSM373458", "GSM373459", "GSM373460", "GSM373461", "GSM373462", "GSM373463", "GSM373464", "GSM373465", "GSM373466", "GSM373467", "GSM373468", "GSM373469", "GSM373470", "GSM373471", "GSM373472", "GSM373473", "GSM373474", "GSM373475", "GSM373476", "GSM373477" ], "type": "protocol", "id": "GDS3678_1" }, { "dataset_id": "GDS3678", "description": "monounsaturated fatty acid rich diet", "sample_id": [ "GSM373478", "GSM373479", "GSM373480", "GSM373481", "GSM373482", "GSM373483", "GSM373484", "GSM373485", "GSM373486", "GSM373487", "GSM373488", "GSM373489", "GSM373490", "GSM373491", "GSM373492", "GSM373493", "GSM373494", "GSM373495", "GSM373496", "GSM373497" ], "type": "protocol", "id": "GDS3678_2" }, { "dataset_id": "GDS3678", "description": "control", "sample_id": [ "GSM373458", "GSM373459", "GSM373460", "GSM373461", "GSM373462", "GSM373463", "GSM373464", "GSM373465", "GSM373466", "GSM373467", "GSM373478", "GSM373479", "GSM373480", "GSM373481", "GSM373482", "GSM373483", "GSM373484", "GSM373485", "GSM373486", "GSM373487" ], "type": "time", "id": "GDS3678_3" }, { "dataset_id": "GDS3678", "description": "8 weeks", "sample_id": [ "GSM373468", "GSM373469", "GSM373470", "GSM373471", "GSM373472", "GSM373473", "GSM373474", "GSM373475", "GSM373476", "GSM373477", "GSM373488", "GSM373489", "GSM373490", "GSM373491", "GSM373492", "GSM373493", "GSM373494", "GSM373495", "GSM373496", "GSM373497" ], "type": "time", "id": "GDS3678_4" }, { "dataset_id": "GDS3678", "description": "113", "sample_id": [ "GSM373458", "GSM373468" ], "type": "individual", "id": "GDS3678_5" }, { "dataset_id": "GDS3678", "description": "114", "sample_id": [ "GSM373459", "GSM373469" ], "type": "individual", "id": "GDS3678_6" }, { "dataset_id": "GDS3678", "description": "119", "sample_id": [ "GSM373460", "GSM373470" ], "type": "individual", "id": "GDS3678_7" }, { "dataset_id": "GDS3678", "description": "122", "sample_id": [ "GSM373461", "GSM373471" ], "type": "individual", "id": "GDS3678_8" }, { "dataset_id": "GDS3678", "description": "129", "sample_id": [ "GSM373462", "GSM373472" ], "type": "individual", "id": "GDS3678_9" }, { "dataset_id": "GDS3678", "description": "169", "sample_id": [ "GSM373463", "GSM373473" ], "type": "individual", "id": "GDS3678_10" }, { "dataset_id": "GDS3678", "description": "170", "sample_id": [ "GSM373464", "GSM373474" ], "type": "individual", "id": "GDS3678_11" }, { "dataset_id": "GDS3678", "description": "179", "sample_id": [ "GSM373465", "GSM373475" ], "type": "individual", "id": "GDS3678_12" }, { "dataset_id": "GDS3678", "description": "181", "sample_id": [ "GSM373466", "GSM373476" ], "type": "individual", "id": "GDS3678_13" }, { "dataset_id": "GDS3678", "description": "185", "sample_id": [ "GSM373467", "GSM373477" ], "type": "individual", "id": "GDS3678_14" }, { "dataset_id": "GDS3678", "description": "101", "sample_id": [ "GSM373478", "GSM373488" ], "type": "individual", "id": "GDS3678_15" }, { "dataset_id": "GDS3678", "description": "103", "sample_id": [ "GSM373479", "GSM373489" ], "type": "individual", "id": "GDS3678_16" }, { "dataset_id": "GDS3678", "description": "106", "sample_id": [ "GSM373480", "GSM373490" ], "type": "individual", "id": "GDS3678_17" }, { "dataset_id": "GDS3678", "description": "108", "sample_id": [ "GSM373481", "GSM373491" ], "type": "individual", "id": "GDS3678_18" }, { "dataset_id": "GDS3678", "description": "110", "sample_id": [ "GSM373483", "GSM373493" ], "type": "individual", "id": "GDS3678_19" }, { "dataset_id": "GDS3678", "description": "136", "sample_id": [ "GSM373484", "GSM373494" ], "type": "individual", "id": "GDS3678_20" }, { "dataset_id": "GDS3678", "description": "144", "sample_id": [ "GSM373485", "GSM373495" ], "type": "individual", "id": "GDS3678_21" }, { "dataset_id": "GDS3678", "description": "146", "sample_id": [ "GSM373486", "GSM373496" ], "type": "individual", "id": "GDS3678_22" }, { "dataset_id": "GDS3678", "description": "180", "sample_id": [ "GSM373487", "GSM373497" ], "type": "individual", "id": "GDS3678_23" }, { "dataset_id": "GDS3678", "description": "109", "sample_id": [ "GSM373482", "GSM373492" ], "type": "individual", "id": "GDS3678_24" }, { "dataset_id": "GDS3678", "description": "female", "sample_id": [ "GSM373458", "GSM373461", "GSM373464", "GSM373465", "GSM373467", "GSM373468", "GSM373471", "GSM373474", "GSM373475", "GSM373477", "GSM373478", "GSM373482", "GSM373484", "GSM373485", "GSM373486", "GSM373488", "GSM373492", "GSM373494", "GSM373495", "GSM373496" ], "type": "gender", "id": "GDS3678_25" }, { "dataset_id": "GDS3678", "description": "male", "sample_id": [ "GSM373459", "GSM373460", "GSM373462", "GSM373463", "GSM373466", "GSM373469", "GSM373470", "GSM373472", "GSM373473", "GSM373476", "GSM373479", "GSM373480", "GSM373481", "GSM373483", "GSM373487", "GSM373489", "GSM373490", "GSM373491", "GSM373493", "GSM373497" ], "type": "gender", "id": "GDS3678_26" } ], "taxid": "9606", "genes": 18410, "aggregation_function": "mean", "name": "GDS3678", "version": 1.0, "instances": "40", "variables": 18415, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3678.tab", "compression": "gz" } ], [ [ "GDS3679.tab" ], { "title": "Morbid obesity: subcutaneous and omental adipose tissues", "description": "Analysis of SC and OM adipose tissue collected from morbidly obese patients. Patients grouped as Low or High Acylation Stimulating protein (ASP) and Triglyceride (TG). ASP is associated with various metabolic disorders. Results provide insight into molecular basis of the two ASP-TG lipemic indices.", "type": "Expression profiling by array", "pubmed_id": "20105310", "platform": "GPL4044", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20469", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE15524", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3679", "description": "1", "sample_id": [ "GSM388904" ], "type": "individual", "id": "GDS3679_1" }, { "dataset_id": "GDS3679", "description": "3", "sample_id": [ "GSM388917" ], "type": "individual", "id": "GDS3679_2" }, { "dataset_id": "GDS3679", "description": "4", "sample_id": [ "GSM388918" ], "type": "individual", "id": "GDS3679_3" }, { "dataset_id": "GDS3679", "description": "5", "sample_id": [ "GSM388905", "GSM388919" ], "type": "individual", "id": "GDS3679_4" }, { "dataset_id": "GDS3679", "description": "6", "sample_id": [ "GSM388930", "GSM388931" ], "type": "individual", "id": "GDS3679_5" }, { "dataset_id": "GDS3679", "description": "10", "sample_id": [ "GSM388906", "GSM388920" ], "type": "individual", "id": "GDS3679_6" }, { "dataset_id": "GDS3679", "description": "14", "sample_id": [ "GSM388907", "GSM388921" ], "type": "individual", "id": "GDS3679_7" }, { "dataset_id": "GDS3679", "description": "15", "sample_id": [ "GSM388908", "GSM388922" ], "type": "individual", "id": "GDS3679_8" }, { "dataset_id": "GDS3679", "description": "17", "sample_id": [ "GSM388909", "GSM388923" ], "type": "individual", "id": "GDS3679_9" }, { "dataset_id": "GDS3679", "description": "18", "sample_id": [ "GSM388910", "GSM388924" ], "type": "individual", "id": "GDS3679_10" }, { "dataset_id": "GDS3679", "description": "19", "sample_id": [ "GSM388911", "GSM388925" ], "type": "individual", "id": "GDS3679_11" }, { "dataset_id": "GDS3679", "description": "20", "sample_id": [ "GSM388912", "GSM388926" ], "type": "individual", "id": "GDS3679_12" }, { "dataset_id": "GDS3679", "description": "21", "sample_id": [ "GSM388913", "GSM388927" ], "type": "individual", "id": "GDS3679_13" }, { "dataset_id": "GDS3679", "description": "22", "sample_id": [ "GSM388914", "GSM388928" ], "type": "individual", "id": "GDS3679_14" }, { "dataset_id": "GDS3679", "description": "23", "sample_id": [ "GSM388915", "GSM388929" ], "type": "individual", "id": "GDS3679_15" }, { "dataset_id": "GDS3679", "description": "24", "sample_id": [ "GSM388916" ], "type": "individual", "id": "GDS3679_16" }, { "dataset_id": "GDS3679", "description": "control", "sample_id": [ "GSM388904", "GSM388905", "GSM388917", "GSM388918", "GSM388919", "GSM388930", "GSM388931" ], "type": "disease state", "id": "GDS3679_17" }, { "dataset_id": "GDS3679", "description": "obese", "sample_id": [ "GSM388906", "GSM388907", "GSM388908", "GSM388909", "GSM388910", "GSM388911", "GSM388912", "GSM388913", "GSM388914", "GSM388915", "GSM388916", "GSM388920", "GSM388921", "GSM388922", "GSM388923", "GSM388924", "GSM388925", "GSM388926", "GSM388927", "GSM388928", "GSM388929" ], "type": "disease state", "id": "GDS3679_18" }, { "dataset_id": "GDS3679", "description": "omental adipose", "sample_id": [ "GSM388904", "GSM388905", "GSM388906", "GSM388907", "GSM388908", "GSM388909", "GSM388910", "GSM388911", "GSM388912", "GSM388913", "GSM388914", "GSM388915", "GSM388916", "GSM388930" ], "type": "tissue", "id": "GDS3679_19" }, { "dataset_id": "GDS3679", "description": "subcutaneous adipose", "sample_id": [ "GSM388917", "GSM388918", "GSM388919", "GSM388920", "GSM388921", "GSM388922", "GSM388923", "GSM388924", "GSM388925", "GSM388926", "GSM388927", "GSM388928", "GSM388929", "GSM388931" ], "type": "tissue", "id": "GDS3679_20" } ], "taxid": "9606", "genes": 16935, "aggregation_function": "mean", "name": "GDS3679", "version": 1.0, "instances": "28", "variables": 16939, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3679.tab", "compression": "gz" } ], [ [ "GDS368.tab" ], { "title": "Skeletal repair in non-union fractures (HG-U95B)", "description": "Identification of mechanisms leading to lack of skeletal repair in non-union fractures. Non-union fractures do not heal six months after injury and may cause advanced arthritis or loss of limb function. Normal and non-union callous bone samples examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE494", "order": "none", "update_date": "Jul 02 2003", "subsets": [ { "dataset_id": "GDS368", "description": "non-union skeletal fracture", "sample_id": [ "GSM7626", "GSM7629" ], "type": "disease state", "id": "GDS368_1" }, { "dataset_id": "GDS368", "description": "normal skeletal fracture", "sample_id": [ "GSM7633", "GSM7635" ], "type": "disease state", "id": "GDS368_2" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS368", "version": 1.0, "instances": "4", "variables": 10311, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS368.tab", "compression": "gz" } ], [ [ "GDS3680.tab" ], { "title": "Calreticulin deficiency effect on embryonic stem cell line", "description": "Analysis of D3 embryonic stem cells lacking calreticulin (CRT). CRT is a calcium binding protein.", "type": "Expression profiling by array", "pubmed_id": "20506533", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE13805", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3680", "description": "wild type", "sample_id": [ "GSM347150", "GSM347151" ], "type": "genotype/variation", "id": "GDS3680_1" }, { "dataset_id": "GDS3680", "description": "calreticulin null", "sample_id": [ "GSM347152", "GSM347153", "GSM347154", "GSM347155", "GSM347156" ], "type": "genotype/variation", "id": "GDS3680_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3680", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3680.tab", "compression": "gz" } ], [ [ "GDS3681.tab" ], { "title": "Type 2 diabetes: myotube", "description": "Analysis of myotube cell lines established from type 2 diabetes (T2D) subjects. Insulin resistance and reduced mitochondrial biogenesis coexist early in T2D pathogenesis independent of hyperglycemia and obesity. Results provide insight into the effect of T2D on developing skeletal muscle cells.", "type": "Expression profiling by array", "pubmed_id": "18719883", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE12643", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3681", "description": "type 2 diabetes", "sample_id": [ "GSM317322", "GSM317323", "GSM317324", "GSM317325", "GSM317326", "GSM317327", "GSM317328", "GSM317329", "GSM317330", "GSM317331" ], "type": "disease state", "id": "GDS3681_1" }, { "dataset_id": "GDS3681", "description": "control", "sample_id": [ "GSM317332", "GSM317333", "GSM317334", "GSM317335", "GSM317336", "GSM317337", "GSM317338", "GSM317339", "GSM317340", "GSM317341" ], "type": "disease state", "id": "GDS3681_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS3681", "version": 1.0, "instances": "20", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3681.tab", "compression": "gz" } ], [ [ "GDS3682.tab" ], { "title": "Thiamine supplementation effect on non-insulin-dependent diabetes model: liver", "description": "Analysis of liver from OLETF males treated with thiamine for 51 weeks. OLETF males exhibit progressive obesity and metabolic disorders similar to human metabolic syndrome. Thiamine mitigates the metabolic disorders. Results provide insight into the molecular basis of this protective effect.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2896", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "36736", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE19292", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3682", "description": "thiamine", "sample_id": [ "GSM476602", "GSM476603" ], "type": "agent", "id": "GDS3682_1" }, { "dataset_id": "GDS3682", "description": "control", "sample_id": [ "GSM476604", "GSM476605" ], "type": "agent", "id": "GDS3682_2" } ], "taxid": "10116", "genes": 28629, "aggregation_function": "mean", "name": "GDS3682", "version": 1.0, "instances": "4", "variables": 28631, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3682.tab", "compression": "gz" } ], [ [ "GDS3683.tab" ], { "title": "ACE inhibitor captopril effect on atherosclerosis model: aorta", "description": "Analysis of aorta from hypercholesterolemic, apolipoprotein E (APOE)-null animals treated with captopril, an angiotensin-converting enzyme (ACE) inhibitor. Captopril attenuates atherosclerosis. Results provide insight into the molecular basis of the antiatherosclerotic effect of captopril.", "type": "Expression profiling by array", "pubmed_id": "20504763", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE19286", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3683", "description": "APOE-deficient", "sample_id": [ "GSM478606", "GSM478607", "GSM478608", "GSM478609" ], "type": "genotype/variation", "id": "GDS3683_1" }, { "dataset_id": "GDS3683", "description": "nontransgenic control", "sample_id": [ "GSM478610", "GSM478611" ], "type": "genotype/variation", "id": "GDS3683_2" }, { "dataset_id": "GDS3683", "description": "atherosclerosis", "sample_id": [ "GSM478606", "GSM478607", "GSM478608", "GSM478609" ], "type": "disease state", "id": "GDS3683_3" }, { "dataset_id": "GDS3683", "description": "control", "sample_id": [ "GSM478610", "GSM478611" ], "type": "disease state", "id": "GDS3683_4" }, { "dataset_id": "GDS3683", "description": "captopril", "sample_id": [ "GSM478608", "GSM478609" ], "type": "agent", "id": "GDS3683_5" }, { "dataset_id": "GDS3683", "description": "untreated", "sample_id": [ "GSM478606", "GSM478607", "GSM478610", "GSM478611" ], "type": "agent", "id": "GDS3683_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3683", "version": 1.0, "instances": "6", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3683.tab", "compression": "gz" } ], [ [ "GDS3684.tab" ], { "title": "Catecholamine stress effect on hearts of beta2 adrenergic receptor deficient mutants", "description": "Analysis of hearts of various wild type and beta2 adrenergic receptor (B2KO) deficient animals subjected to catecholamine (CA) stress by beta receptor agonist isoproterenol treatment. B2KO mutants and FVB wild type animals develop left ventricle systolic dysfunction in response to CA stress.", "type": "Expression profiling by array", "pubmed_id": "19770745", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "86", "value_type": "count", "reference_series": "GSE12413", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3684", "description": "untreated", "sample_id": [ "GSM311495", "GSM311496", "GSM311497", "GSM311498", "GSM311499", "GSM311500", "GSM311501", "GSM311502", "GSM311503", "GSM311504", "GSM311517", "GSM311518", "GSM311519", "GSM311520", "GSM311521", "GSM311522", "GSM311523", "GSM311524", "GSM311525", "GSM311526", "GSM311527", "GSM311538", "GSM311539", "GSM311540", "GSM311541", "GSM311542", "GSM311543", "GSM311544", "GSM311545", "GSM311546", "GSM311547", "GSM311560", "GSM311561", "GSM311562", "GSM311563", "GSM311564", "GSM311565", "GSM311566", "GSM311567", "GSM311568", "GSM311569" ], "type": "agent", "id": "GDS3684_1" }, { "dataset_id": "GDS3684", "description": "isoproterenol", "sample_id": [ "GSM311505", "GSM311506", "GSM311507", "GSM311508", "GSM311509", "GSM311510", "GSM311511", "GSM311512", "GSM311513", "GSM311514", "GSM311515", "GSM311516", "GSM311528", "GSM311529", "GSM311530", "GSM311531", "GSM311532", "GSM311533", "GSM311534", "GSM311535", "GSM311536", "GSM311537", "GSM311548", "GSM311549", "GSM311550", "GSM311551", "GSM311552", "GSM311553", "GSM311554", "GSM311555", "GSM311556", "GSM311557", "GSM311558", "GSM311559", "GSM311570", "GSM311571", "GSM311572", "GSM311573", "GSM311574", "GSM311575", "GSM311576", "GSM311577", "GSM311578", "GSM311579", "GSM311580" ], "type": "agent", "id": "GDS3684_2" }, { "dataset_id": "GDS3684", "description": "FVB", "sample_id": [ "GSM311495", "GSM311496", "GSM311497", "GSM311498", "GSM311499", "GSM311500", "GSM311501", "GSM311502", "GSM311503", "GSM311504", "GSM311505", "GSM311506", "GSM311507", "GSM311508", "GSM311509", "GSM311510", "GSM311511", "GSM311512", "GSM311513", "GSM311514", "GSM311515", "GSM311516" ], "type": "strain", "id": "GDS3684_3" }, { "dataset_id": "GDS3684", "description": "C57BL/6", "sample_id": [ "GSM311517", "GSM311518", "GSM311519", "GSM311520", "GSM311521", "GSM311522", "GSM311523", "GSM311524", "GSM311525", "GSM311526", "GSM311527", "GSM311528", "GSM311529", "GSM311530", "GSM311531", "GSM311532", "GSM311533", "GSM311534", "GSM311535", "GSM311536", "GSM311537" ], "type": "strain", "id": "GDS3684_4" }, { "dataset_id": "GDS3684", "description": "B6129SF2/J", "sample_id": [ "GSM311538", "GSM311539", "GSM311540", "GSM311541", "GSM311542", "GSM311543", "GSM311544", "GSM311545", "GSM311546", "GSM311547", "GSM311548", "GSM311549", "GSM311550", "GSM311551", "GSM311552", "GSM311553", "GSM311554", "GSM311555", "GSM311556", "GSM311557", "GSM311558", "GSM311559" ], "type": "strain", "id": "GDS3684_5" }, { "dataset_id": "GDS3684", "description": "B2KO mutant", "sample_id": [ "GSM311560", "GSM311561", "GSM311562", "GSM311563", "GSM311564", "GSM311565", "GSM311566", "GSM311567", "GSM311568", "GSM311569", "GSM311570", "GSM311571", "GSM311572", "GSM311573", "GSM311574", "GSM311575", "GSM311576", "GSM311577", "GSM311578", "GSM311579", "GSM311580" ], "type": "strain", "id": "GDS3684_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3684", "version": 1.0, "instances": "86", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3684.tab", "compression": "gz" } ], [ [ "GDS3685.tab" ], { "title": "Livers with Dicer1 deficient hepatocytes", "description": "Analysis of liver with hepatocytes lacking Dicer1. Dicer1 is an RNaseIII-type enzyme that cleaves both long double-stranded RNA molecules and hairpin miRNA precursors, and it is required for the processing of all miRNAs. Results provide insight into the function of Dicer1 in the liver.", "type": "Expression profiling by array", "pubmed_id": "19127519", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE11899", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3685", "description": "wild type", "sample_id": [ "GSM300676", "GSM300677", "GSM300678", "GSM300679", "GSM300680" ], "type": "genotype/variation", "id": "GDS3685_1" }, { "dataset_id": "GDS3685", "description": "Dicer1 null", "sample_id": [ "GSM300681", "GSM300682", "GSM300683", "GSM300684", "GSM300685" ], "type": "genotype/variation", "id": "GDS3685_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3685", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3685.tab", "compression": "gz" } ], [ [ "GDS3686.tab" ], { "title": "Colony stimulating factor 1 effect on monocyte derived macrophage", "description": "Analysis of mature monocyte derived macrophages treated with colony stimulating factor 1 (CSF-1) in vitro for 6 hours. CSF-1 supports the proliferation and differentiation of monocytes and macrophages. Results provide insight into the effect of CSF-1 stimulation on mature monocytes.", "type": "Expression profiling by array", "pubmed_id": "19004987", "platform": "GPL2507", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "47293", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11061", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3686", "description": "donor 1", "sample_id": [ "GSM279639", "GSM279640" ], "type": "individual", "id": "GDS3686_1" }, { "dataset_id": "GDS3686", "description": "donor 2", "sample_id": [ "GSM279641", "GSM279642" ], "type": "individual", "id": "GDS3686_2" }, { "dataset_id": "GDS3686", "description": "donor 3", "sample_id": [ "GSM279643", "GSM279644" ], "type": "individual", "id": "GDS3686_3" }, { "dataset_id": "GDS3686", "description": "control", "sample_id": [ "GSM279639", "GSM279641", "GSM279643" ], "type": "agent", "id": "GDS3686_4" }, { "dataset_id": "GDS3686", "description": "CSF-1", "sample_id": [ "GSM279640", "GSM279642", "GSM279644" ], "type": "agent", "id": "GDS3686_5" } ], "taxid": "9606", "genes": 44917, "aggregation_function": "mean", "name": "GDS3686", "version": 1.0, "instances": "6", "variables": 44920, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3686.tab", "compression": "gz" } ], [ [ "GDS3687.tab" ], { "title": "Streptozotocin-induced diabetes during pregnancy effect on the neonatal lung", "description": "Analysis of lung from 14 day old Sprague-Dawley neonates born to a parent with streptozotocin-induced diabetes. Maternal diabetes is associated with fetal and neonatal adverse effects including pulmonary disturbances.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8031", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22226", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE14307", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3687", "description": "control", "sample_id": [ "GSM357828", "GSM357829", "GSM357830", "GSM357831" ], "type": "protocol", "id": "GDS3687_1" }, { "dataset_id": "GDS3687", "description": "exposure to maternal diabetes", "sample_id": [ "GSM357832", "GSM357833", "GSM357834", "GSM357835" ], "type": "protocol", "id": "GDS3687_2" } ], "taxid": "10116", "genes": 22006, "aggregation_function": "mean", "name": "GDS3687", "version": 1.0, "instances": "8", "variables": 22008, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3687.tab", "compression": "gz" } ], [ [ "GDS3688.tab" ], { "title": "Obese children: omental adipose tissue", "description": "Analysis of omental adipose from obese, prepubertal children. Obese children display insulin resistance (IR) and other metabolic abnormalities at higher rates than do normal weight children. Results provide insight into the molecular mechanisms underlying the pathogenesis of childhood obesity.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE9624", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3688", "description": "control", "sample_id": [ "GSM243215", "GSM243216", "GSM243217", "GSM243218", "GSM243219", "GSM243220" ], "type": "disease state", "id": "GDS3688_1" }, { "dataset_id": "GDS3688", "description": "obese", "sample_id": [ "GSM243225", "GSM243226", "GSM243227", "GSM243228", "GSM243275" ], "type": "disease state", "id": "GDS3688_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3688", "version": 1.0, "instances": "11", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3688.tab", "compression": "gz" } ], [ [ "GDS3689.tab" ], { "title": "Diesel exhaust particle effect on healthy animals: heart left ventricle", "description": "Analysis of heart left ventricle from healthy animals exposed to diesel exhaust (DE) particles. Spontaneously hypertensive animals also examined. DE is linked to cardiovascular impairment. Results suggest DE exposure produces a hypertensive-like cardiac gene expression pattern in healthy animals.", "type": "Expression profiling by array", "pubmed_id": "19165385", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE9694", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3689", "description": "spontaneously hypertensive", "sample_id": [ "GSM245140", "GSM245141", "GSM245142", "GSM245143", "GSM245145", "GSM245147", "GSM245149", "GSM245151" ], "type": "disease state", "id": "GDS3689_1" }, { "dataset_id": "GDS3689", "description": "healthy", "sample_id": [ "GSM245153", "GSM245155", "GSM245156", "GSM245157", "GSM245158", "GSM245160", "GSM245162", "GSM245163" ], "type": "disease state", "id": "GDS3689_2" }, { "dataset_id": "GDS3689", "description": "control", "sample_id": [ "GSM245140", "GSM245141", "GSM245142", "GSM245143", "GSM245153", "GSM245155", "GSM245156", "GSM245157" ], "type": "stress", "id": "GDS3689_3" }, { "dataset_id": "GDS3689", "description": "diesel exhaust particles", "sample_id": [ "GSM245145", "GSM245147", "GSM245149", "GSM245151", "GSM245158", "GSM245160", "GSM245162", "GSM245163" ], "type": "stress", "id": "GDS3689_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3689", "version": 1.0, "instances": "16", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3689.tab", "compression": "gz" } ], [ [ "GDS369.tab" ], { "title": "Skeletal repair in non-union fractures (HG-U95C)", "description": "Identification of mechanisms leading to lack of skeletal repair in non-union fractures. Non-union fractures do not heal six months after injury and may cause advanced arthritis or loss of limb function. Normal and non-union callous bone samples examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE494", "order": "none", "update_date": "Jul 02 2003", "subsets": [ { "dataset_id": "GDS369", "description": "non-union skeletal fracture", "sample_id": [ "GSM7627", "GSM7630" ], "type": "disease state", "id": "GDS369_1" }, { "dataset_id": "GDS369", "description": "normal skeletal fracture", "sample_id": [ "GSM7634", "GSM7636" ], "type": "disease state", "id": "GDS369_2" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS369", "version": 1.0, "instances": "4", "variables": 10624, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS369.tab", "compression": "gz" } ], [ [ "GDS3690.tab" ], { "title": "Atherosclerotic Coronary Artery Disease: circulating mononuclear cell types", "description": "Analysis of various mononuclear cells from patients with severe triple-vessel coronary artery disease (CAD). CD34+ stem cells, CD4+ T-helper cells, CD14+ resting monocytes, LPS-stimulated monocytes, and macrophages were examined. Results provide insight into the pathophysiology of atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "19059264", "platform": "GPL6255", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "20589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "153", "value_type": "transformed count", "reference_series": "GSE9820", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3690", "description": "A1", "sample_id": [ "GSM247742", "GSM247755", "GSM247758", "GSM247795", "GSM247841", "GSM247854" ], "type": "individual", "id": "GDS3690_1" }, { "dataset_id": "GDS3690", "description": "A10", "sample_id": [ "GSM247703", "GSM247715", "GSM247739", "GSM247829", "GSM247842" ], "type": "individual", "id": "GDS3690_2" }, { "dataset_id": "GDS3690", "description": "A11", "sample_id": [ "GSM247776", "GSM247786", "GSM247805", "GSM247812", "GSM247850" ], "type": "individual", "id": "GDS3690_3" }, { "dataset_id": "GDS3690", "description": "A12", "sample_id": [ "GSM247717", "GSM247783", "GSM247784", "GSM247834", "GSM247846" ], "type": "individual", "id": "GDS3690_4" }, { "dataset_id": "GDS3690", "description": "A13", "sample_id": [ "GSM247710", "GSM247713", "GSM247733", "GSM247822", "GSM247840", "GSM247852" ], "type": "individual", "id": "GDS3690_5" }, { "dataset_id": "GDS3690", "description": "A15", "sample_id": [ "GSM247730", "GSM247770", "GSM247790", "GSM247824" ], "type": "individual", "id": "GDS3690_6" }, { "dataset_id": "GDS3690", "description": "A19", "sample_id": [ "GSM247711", "GSM247782", "GSM247785", "GSM247836", "GSM247847" ], "type": "individual", "id": "GDS3690_7" }, { "dataset_id": "GDS3690", "description": "A2", "sample_id": [ "GSM247750", "GSM247760", "GSM247772", "GSM247788", "GSM247849" ], "type": "individual", "id": "GDS3690_8" }, { "dataset_id": "GDS3690", "description": "A20", "sample_id": [ "GSM247704", "GSM247714", "GSM247764", "GSM247818", "GSM247828", "GSM247851" ], "type": "individual", "id": "GDS3690_9" }, { "dataset_id": "GDS3690", "description": "A22", "sample_id": [ "GSM247706", "GSM247734", "GSM247823", "GSM247835" ], "type": "individual", "id": "GDS3690_10" }, { "dataset_id": "GDS3690", "description": "A24", "sample_id": [ "GSM247809", "GSM247819", "GSM247830", "GSM247833" ], "type": "individual", "id": "GDS3690_11" }, { "dataset_id": "GDS3690", "description": "A25", "sample_id": [ "GSM247716", "GSM247722", "GSM247738", "GSM247747" ], "type": "individual", "id": "GDS3690_12" }, { "dataset_id": "GDS3690", "description": "A27", "sample_id": [ "GSM247798", "GSM247816", "GSM247821", "GSM247838", "GSM247839" ], "type": "individual", "id": "GDS3690_13" }, { "dataset_id": "GDS3690", "description": "A3", "sample_id": [ "GSM247721", "GSM247762", "GSM247777", "GSM247781", "GSM247825" ], "type": "individual", "id": "GDS3690_14" }, { "dataset_id": "GDS3690", "description": "A30", "sample_id": [ "GSM247720", "GSM247732", "GSM247761", "GSM247814" ], "type": "individual", "id": "GDS3690_15" }, { "dataset_id": "GDS3690", "description": "A31", "sample_id": [ "GSM247708", "GSM247740", "GSM247748", "GSM247749", "GSM247767" ], "type": "individual", "id": "GDS3690_16" }, { "dataset_id": "GDS3690", "description": "A32", "sample_id": [ "GSM247705", "GSM247746", "GSM247752", "GSM247753", "GSM247769" ], "type": "individual", "id": "GDS3690_17" }, { "dataset_id": "GDS3690", "description": "A33", "sample_id": [ "GSM247723", "GSM247756", "GSM247775", "GSM247779", "GSM247826" ], "type": "individual", "id": "GDS3690_18" }, { "dataset_id": "GDS3690", "description": "A34", "sample_id": [ "GSM247741", "GSM247778", "GSM247799", "GSM247806", "GSM247815" ], "type": "individual", "id": "GDS3690_19" }, { "dataset_id": "GDS3690", "description": "A35", "sample_id": [ "GSM247735", "GSM247780", "GSM247791", "GSM247831", "GSM247845", "GSM247853" ], "type": "individual", "id": "GDS3690_20" }, 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"GSM247751", "GSM247757", "GSM247794", "GSM247837", "GSM247754", "GSM247763", "GSM247771", "GSM247789", "GSM247802" ], "type": "disease state", "id": "GDS3690_33" }, { "dataset_id": "GDS3690", "description": "macrophage", "sample_id": [ "GSM247795", "GSM247854", "GSM247717", "GSM247822", "GSM247750", "GSM247721", "GSM247761", "GSM247705", "GSM247792", "GSM247745", "GSM247855", "GSM247736", "GSM247707", "GSM247808", "GSM247766", "GSM247703", "GSM247805", "GSM247790", "GSM247711", "GSM247764", "GSM247851", "GSM247823", "GSM247819", "GSM247738", "GSM247816", "GSM247708", "GSM247723", "GSM247741", "GSM247735", "GSM247800", "GSM247759", "GSM247796", "GSM247794", "GSM247754" ], "type": "cell type", "id": "GDS3690_34" }, { "dataset_id": "GDS3690", "description": "resting monocyte", "sample_id": [ "GSM247758", "GSM247784", "GSM247710", "GSM247788", "GSM247781", "GSM247720", "GSM247746", "GSM247726", "GSM247804", "GSM247712", "GSM247737", "GSM247787", "GSM247718", "GSM247739", "GSM247786", "GSM247730", "GSM247782", "GSM247714", "GSM247706", "GSM247809", "GSM247716", "GSM247839", "GSM247740", "GSM247779", "GSM247799", "GSM247831", "GSM247729", "GSM247724", "GSM247725", "GSM247757", "GSM247789" ], "type": "cell type", "id": "GDS3690_35" }, { "dataset_id": "GDS3690", "description": "stem cell", "sample_id": [ "GSM247742", "GSM247834", "GSM247713", "GSM247849", "GSM247762", "GSM247752", "GSM247803", "GSM247774", "GSM247797", "GSM247843", "GSM247832", "GSM247715", "GSM247836", "GSM247828", "GSM247821", "GSM247749", "GSM247756", "GSM247778", "GSM247845", "GSM247810", "GSM247801", "GSM247744", "GSM247802" ], "type": "cell type", "id": "GDS3690_36" }, { "dataset_id": "GDS3690", "description": "stimulated monocyte", "sample_id": [ "GSM247755", "GSM247783", "GSM247840", "GSM247772", "GSM247825", "GSM247814", "GSM247769", "GSM247728", "GSM247807", "GSM247743", "GSM247827", "GSM247811", "GSM247709", "GSM247829", "GSM247812", "GSM247824", "GSM247785", "GSM247704", "GSM247835", "GSM247830", "GSM247747", "GSM247798", "GSM247767", "GSM247826", "GSM247806", "GSM247791", "GSM247844", "GSM247817", "GSM247731", "GSM247751", "GSM247771" ], "type": "cell type", "id": "GDS3690_37" }, { "dataset_id": "GDS3690", "description": "T cell", "sample_id": [ "GSM247841", "GSM247846", "GSM247733", "GSM247852", "GSM247760", "GSM247777", "GSM247732", "GSM247753", "GSM247768", "GSM247813", "GSM247719", "GSM247848", "GSM247773", "GSM247820", "GSM247842", "GSM247776", "GSM247850", "GSM247770", "GSM247847", "GSM247818", "GSM247734", "GSM247833", "GSM247722", "GSM247838", "GSM247748", "GSM247775", "GSM247815", "GSM247780", "GSM247853", "GSM247793", "GSM247727", "GSM247765", "GSM247837", "GSM247763" ], "type": "cell type", "id": "GDS3690_38" } ], "taxid": "9606", "genes": 18739, "aggregation_function": "mean", "name": "GDS3690", "version": 1.0, "instances": "153", "variables": 18743, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3690.tab", "compression": "gz" } ], [ [ "GDS3691.tab" ], { "title": "Sustained olive oil consumption effect on peripheral blood mononuclear cells", "description": "Analysis of PBMCs from healthy males after 3 weeks of virgin olive oil (VOO) consumption at doses common in the Mediterranean diet. The Mediterranean diet protects against cardiovascular diseases. Results provide insight into the molecular mechanisms underlying the beneficial action of VOO.", "type": "Expression profiling by array", "pubmed_id": [ "19545487", "19290808" ], "platform": "GPL6511", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE10590", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3691", "description": "baseline", "sample_id": [ "GSM266996", "GSM266997", "GSM266998" ], "type": "protocol", "id": "GDS3691_1" }, { "dataset_id": "GDS3691", "description": "olive oil consumption", "sample_id": [ "GSM266999", "GSM267000", "GSM267001", "GSM267002", "GSM267003", "GSM267004" ], "type": "protocol", "id": "GDS3691_2" }, { "dataset_id": "GDS3691", "description": "control", "sample_id": [ "GSM266996", "GSM266997", "GSM266998" ], "type": "time", "id": "GDS3691_3" }, { "dataset_id": "GDS3691", "description": "6 hours", "sample_id": [ "GSM266999", "GSM267000", "GSM267001" ], "type": "time", "id": "GDS3691_4" }, { "dataset_id": "GDS3691", "description": "3 weeks", "sample_id": [ "GSM267002", "GSM267003", "GSM267004" ], "type": "time", "id": "GDS3691_5" } ], "taxid": "9606", "genes": 28309, "aggregation_function": "mean", "name": "GDS3691", "version": 1.0, "instances": "9", "variables": 28312, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3691.tab", "compression": "gz" } ], [ [ "GDS3692.tab" ], { "title": "Lean B6.C-D7Mit353 strain: various tissues", "description": "Analysis of brain, liver, gastrocnemius muscle, and gonadal white adipose tissue from male B6.C-D7Mit353 and C57BL/6J animals. B6.C-D7Mit353 is a lean congenic stain with less body fat than the background C57BL/6J strain.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL2995", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "33012", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE7431", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3692", "description": "gonadal white adipose", "sample_id": [ "GSM179979", "GSM179980", "GSM179981", "GSM179996", "GSM179997", "GSM179998" ], "type": "tissue", "id": "GDS3692_1" }, { "dataset_id": "GDS3692", "description": "brain", "sample_id": [ "GSM179982", "GSM179983", "GSM179999", "GSM180000", "GSM180001", "GSM180002", "GSM180003" ], "type": "tissue", "id": "GDS3692_2" }, { "dataset_id": "GDS3692", "description": "liver", "sample_id": [ "GSM179984", "GSM179985", "GSM179986", "GSM179987", "GSM179988", "GSM179989" ], "type": "tissue", "id": "GDS3692_3" }, { "dataset_id": "GDS3692", "description": "gastrocnemius", "sample_id": [ "GSM179990", "GSM179991", "GSM179992", "GSM179993", "GSM179994", "GSM179995" ], "type": "tissue", "id": "GDS3692_4" }, { "dataset_id": "GDS3692", "description": "B6.C-D7Mit353", "sample_id": [ "GSM179980", "GSM179981", "GSM179982", "GSM179983", "GSM179984", "GSM179985", "GSM179986", "GSM179990", "GSM179991", "GSM179992", "GSM180002", "GSM180003", "GSM179979" ], "type": "strain", "id": "GDS3692_5" }, { "dataset_id": "GDS3692", "description": "C57BL/6J", "sample_id": [ "GSM179987", "GSM179988", "GSM179989", "GSM179993", "GSM179994", "GSM179995", "GSM179996", "GSM179997", "GSM179998", "GSM179999", "GSM180000", "GSM180001" ], "type": "strain", "id": "GDS3692_6" } ], "taxid": "10090", "genes": 32220, "aggregation_function": "mean", "name": "GDS3692", "version": 1.0, "instances": "25", "variables": 32223, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3692.tab", "compression": "gz" } ], [ [ "GDS3694.tab" ], { "title": "Skeletal muscles of diet sensitive and resistant individuals after completion of a weight loss program", "description": "Analysis of skeletal muscle from obese diet sensitive and resistant women after completion of a weight loss program. Subjects are in the highest and lowest quintiles for weight loss rate. Results provide insight into the molecular basis of the variability in weight loss during caloric restriction.", "type": "Expression profiling by array", "pubmed_id": "20332421", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE17371", "order": "none", "update_date": "Apr 22 2010", "subsets": [ { "dataset_id": "GDS3694", "description": "diet-resistant", "sample_id": [ "GSM434104", "GSM434105", "GSM434106", "GSM434109", "GSM434110", "GSM434113" ], "type": "specimen", "id": "GDS3694_1" }, { "dataset_id": "GDS3694", "description": "diet-sensitive", "sample_id": [ "GSM434107", "GSM434108", "GSM434111", "GSM434112", "GSM434114", "GSM434115" ], "type": "specimen", "id": "GDS3694_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3694", "version": 1.0, "instances": "12", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3694.tab", "compression": "gz" } ], [ [ "GDS3696.tab" ], { "title": "Atherosclerotic left anterior descendent coronary artery: low scan", "description": "Analysis of 8 atherosclerotic LAD coronaries presenting at least 75% stenosis and calcified plaques. Atherosclerosis affects aorta, coronary, carotid, and iliac arteries more frequently than any other vessel. Results provide insight into molecular networks underlying the atherosclerotic condition.", "type": "Expression profiling by array", "pubmed_id": "19134193", "platform": "GPL6647", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "21888", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "22", "value_type": "log2 ratio", "reference_series": "GSE11138", "order": "none", "update_date": "Apr 23 2010", "subsets": [ { "dataset_id": "GDS3696", "description": "patient 1", "sample_id": [ "GSM280187", "GSM280188", "GSM280189", "GSM280190" ], "type": "individual", "id": "GDS3696_1" }, { "dataset_id": "GDS3696", "description": "patient 4", "sample_id": [ "GSM280191", "GSM280192" ], "type": "individual", "id": "GDS3696_2" }, { "dataset_id": "GDS3696", "description": "patient 6", "sample_id": [ "GSM280193", "GSM280194" ], "type": "individual", "id": "GDS3696_3" }, { "dataset_id": "GDS3696", "description": "patient 2", "sample_id": [ "GSM280195", "GSM280196", "GSM280197", "GSM280198" ], "type": "individual", "id": "GDS3696_4" }, { "dataset_id": "GDS3696", "description": "patient 8", "sample_id": [ "GSM280206", "GSM280207", "GSM280212", "GSM280214" ], "type": "individual", "id": "GDS3696_5" }, { "dataset_id": "GDS3696", "description": "patient 5", "sample_id": [ "GSM280209", "GSM280210" ], "type": "individual", "id": "GDS3696_6" }, { "dataset_id": "GDS3696", "description": "patient 3", "sample_id": [ "GSM280216", "GSM280218" ], "type": "individual", "id": "GDS3696_7" }, { "dataset_id": "GDS3696", "description": "patient 7", "sample_id": [ "GSM280219", "GSM280222" ], "type": "individual", "id": "GDS3696_8" } ], "taxid": "9606", "genes": 19928, "aggregation_function": "mean", "name": "GDS3696", "version": 1.0, "instances": "22", "variables": 19930, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3696.tab", "compression": "gz" } ], [ [ "GDS3697.tab" ], { "title": "Atherosclerotic left anterior descendent coronary artery: medium scan", "description": "Analysis of 8 atherosclerotic LAD coronaries presenting at least 75% stenosis and calcified plaques. Atherosclerosis affects aorta, coronary, carotid, and iliac arteries more frequently than any other vessel. Results provide insight into molecular networks underlying the atherosclerotic condition.", "type": "Expression profiling by array", "pubmed_id": "19134193", "platform": "GPL6647", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "21888", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "22", "value_type": "log2 ratio", "reference_series": "GSE11138", "order": "none", "update_date": "Apr 23 2010", "subsets": [ { "dataset_id": "GDS3697", "description": "patient 1", "sample_id": [ "GSM280132", "GSM280133", "GSM280134", "GSM280135" ], "type": "individual", "id": "GDS3697_1" }, { "dataset_id": "GDS3697", "description": "patient 4", "sample_id": [ "GSM280136", "GSM280137" ], "type": "individual", "id": "GDS3697_2" }, { "dataset_id": "GDS3697", "description": "patient 6", "sample_id": [ "GSM280138", "GSM280139" ], "type": "individual", "id": "GDS3697_3" }, { "dataset_id": "GDS3697", "description": "patient 2", "sample_id": [ "GSM280140", "GSM280141", "GSM280142", "GSM280143" ], "type": "individual", "id": "GDS3697_4" }, { "dataset_id": "GDS3697", "description": "patient 8", "sample_id": [ "GSM280144", "GSM280145", "GSM280148", "GSM280149" ], "type": "individual", "id": "GDS3697_5" }, { "dataset_id": "GDS3697", "description": "patient 5", "sample_id": [ "GSM280146", "GSM280147" ], "type": "individual", "id": "GDS3697_6" }, { "dataset_id": "GDS3697", "description": "patient 3", "sample_id": [ "GSM280150", "GSM280151" ], "type": "individual", "id": "GDS3697_7" }, { "dataset_id": "GDS3697", "description": "patient 7", "sample_id": [ "GSM280152", "GSM280153" ], "type": "individual", "id": "GDS3697_8" } ], "taxid": "9606", "genes": 19928, "aggregation_function": "mean", "name": "GDS3697", "version": 1.0, "instances": "22", "variables": 19930, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3697.tab", "compression": "gz" } ], [ [ "GDS3698.tab" ], { "title": "Atherosclerotic left anterior descendent coronary artery: high scan", "description": "Analysis of 8 atherosclerotic LAD coronaries presenting at least 75% stenosis and calcified plaques. Atherosclerosis affects aorta, coronary, carotid, and iliac arteries more frequently than any other vessel. Results provide insight into molecular networks underlying the atherosclerotic condition.", "type": "Expression profiling by array", "pubmed_id": "19134193", "platform": "GPL6647", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "21888", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "22", "value_type": "log2 ratio", "reference_series": "GSE11138", "order": "none", "update_date": "Apr 23 2010", "subsets": [ { "dataset_id": "GDS3698", "description": "patient 1", "sample_id": [ "GSM279949", "GSM279950", "GSM279951", "GSM279952" ], "type": "individual", "id": "GDS3698_1" }, { "dataset_id": "GDS3698", "description": "patient 4", "sample_id": [ "GSM279953", "GSM279954" ], "type": "individual", "id": "GDS3698_2" }, { "dataset_id": "GDS3698", "description": "patient 6", "sample_id": [ "GSM279955", "GSM279956" ], "type": "individual", "id": "GDS3698_3" }, { "dataset_id": "GDS3698", "description": "patient 2", "sample_id": [ "GSM279957", "GSM279959", "GSM279960", "GSM279962" ], "type": "individual", "id": "GDS3698_4" }, { "dataset_id": "GDS3698", "description": "patient 8", "sample_id": [ "GSM279967", "GSM279970", "GSM279991", "GSM279992" ], "type": "individual", "id": "GDS3698_5" }, { "dataset_id": "GDS3698", "description": "patient 5", "sample_id": [ "GSM279976", "GSM279982" ], "type": "individual", "id": "GDS3698_6" }, { "dataset_id": "GDS3698", "description": "patient 3", "sample_id": [ "GSM280011", "GSM280014" ], "type": "individual", "id": "GDS3698_7" }, { "dataset_id": "GDS3698", "description": "patient 7", "sample_id": [ "GSM280015", "GSM280016" ], "type": "individual", "id": "GDS3698_8" } ], "taxid": "9606", "genes": 19928, "aggregation_function": "mean", "name": "GDS3698", "version": 1.0, "instances": "22", "variables": 19930, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3698.tab", "compression": "gz" } ], [ [ "GDS3699.tab" ], { "title": "Night and day effects on pineal gland (Expt. A)", "description": "Analysis of pineal glands from Sprague-Dawley rats at mid-day (Zeitgeber time ZT7) or midnight (ZT19). Rats were kept on a 14:10 light-dark (LD) cycle. The pineal gland plays a vital role in vertebrate chronobiology. Results provide insight into night/day changes in pineal gene expression.", "type": "Expression profiling by array", "pubmed_id": [ "19103603", "21367864" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12341", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3699", "description": "mid-day (ZT7)", "sample_id": [ "GSM310017", "GSM310018", "GSM310019" ], "type": "time", "id": "GDS3699_1" }, { "dataset_id": "GDS3699", "description": "midnight (ZT19)", "sample_id": [ "GSM310020", "GSM310021", "GSM310022" ], "type": "time", "id": "GDS3699_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3699", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3699.tab", "compression": "gz" } ], [ [ "GDS37.tab" ], { "title": "Diauxic shift time course", "description": "Gene expression patterns accompanying the metabolic shift from anaerobic fermentation to aerobic respiration. Samples taken at several time points up to 20.5 h.", "type": "Expression profiling by array", "pubmed_id": "9381177", "platform": "GPL57", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6400", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE28", "order": "ordered", "update_date": "Jan 22 2009", "subsets": [ { "dataset_id": "GDS37", "description": "0 hour", "sample_id": [ "GSM888" ], "type": "time", "id": "GDS37_1" }, { "dataset_id": "GDS37", "description": "9.5 hour", "sample_id": [ "GSM890" ], "type": "time", "id": "GDS37_2" }, { "dataset_id": "GDS37", "description": "11.5 hour", "sample_id": [ "GSM891" ], "type": "time", "id": "GDS37_3" }, { "dataset_id": "GDS37", "description": "13.5 hour", "sample_id": [ "GSM892" ], "type": "time", "id": "GDS37_4" }, { "dataset_id": "GDS37", "description": "15.5 hour", "sample_id": [ "GSM887" ], "type": "time", "id": "GDS37_5" }, { "dataset_id": "GDS37", "description": "18.5 hour", "sample_id": [ "GSM889" ], "type": "time", "id": "GDS37_6" }, { "dataset_id": "GDS37", "description": "20.5 hour", "sample_id": [ "GSM893" ], "type": "time", "id": "GDS37_7" } ], "taxid": "4932", "genes": 6181, "aggregation_function": "mean", "name": "GDS37", "version": 1.0, "instances": "7", "variables": 6183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS37.tab", "compression": "gz" } ], [ [ "GDS3700.tab" ], { "title": "Night and day effects on pineal gland (Expt. B)", "description": "Analysis of pineal glands from Sprague-Dawley rats at mid-day (ZT7) or midnight (ZT19). Similar samples from pineal gland-specific DNF2 transgenic rats also examined. The pineal plays a vital role in vertebrate chronobiology. Results provide insight into night/day changes in pineal gene expression.", "type": "Expression profiling by array", "pubmed_id": [ "19103603", "21367864" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12342", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3700", "description": "mid-day (ZT7)", "sample_id": [ "GSM310023", "GSM310024", "GSM310025", "GSM310029", "GSM310030", "GSM310031" ], "type": "time", "id": "GDS3700_1" }, { "dataset_id": "GDS3700", "description": "midnight (ZT19)", "sample_id": [ "GSM310026", "GSM310027", "GSM310028", "GSM310032", "GSM310033", "GSM310034" ], "type": "time", "id": "GDS3700_2" }, { "dataset_id": "GDS3700", "description": "wild type", "sample_id": [ "GSM310023", "GSM310024", "GSM310025", "GSM310026", "GSM310027", "GSM310028" ], "type": "genotype/variation", "id": "GDS3700_3" }, { "dataset_id": "GDS3700", "description": "DNF2 transgenic", "sample_id": [ "GSM310029", "GSM310030", "GSM310031", "GSM310032", "GSM310033", "GSM310034" ], "type": "genotype/variation", "id": "GDS3700_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3700", "version": 1.0, "instances": "12", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3700.tab", "compression": "gz" } ], [ [ "GDS3701.tab" ], { "title": "Night and day effects on pineal gland and various other tissues (Expt. C)", "description": "Analysis of pineal glands and other tissues (retina, neocortex, cerebellum, hypothalamus, heart, and liver) obtained from Sprague-Dawley rats at mid-day (ZT7) or midnight (ZT19). Results provide insight into genes that characterize the pineal gland, independent of tonic or night/day influences.", "type": "Expression profiling by array", "pubmed_id": [ "19103603", "21367864" ], "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE12343", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3701", "description": "mid-day (ZT9)", "sample_id": [ "GSM310035", "GSM310036", "GSM310037", "GSM310038", "GSM310043", "GSM310045", "GSM310047", "GSM310049", "GSM310051", "GSM310053" ], "type": "time", "id": "GDS3701_1" }, { "dataset_id": "GDS3701", "description": "midnight (ZT19)", "sample_id": [ "GSM310039", "GSM310040", "GSM310041", "GSM310042", "GSM310044", "GSM310046", "GSM310048", "GSM310050", "GSM310052", "GSM310054" ], "type": "time", "id": "GDS3701_2" }, { "dataset_id": "GDS3701", "description": "pineal gland", "sample_id": [ "GSM310035", "GSM310036", "GSM310037", "GSM310038", "GSM310039", "GSM310040", "GSM310041", "GSM310042" ], "type": "tissue", "id": "GDS3701_3" }, { "dataset_id": "GDS3701", "description": "retina", "sample_id": [ "GSM310043", "GSM310044" ], "type": "tissue", "id": "GDS3701_4" }, { "dataset_id": "GDS3701", "description": "cerebellum", "sample_id": [ "GSM310045", "GSM310046" ], "type": "tissue", "id": "GDS3701_5" }, { "dataset_id": "GDS3701", "description": "cortex", "sample_id": [ "GSM310047", "GSM310048" ], "type": "tissue", "id": "GDS3701_6" }, { "dataset_id": "GDS3701", "description": "hypothalamus", "sample_id": [ "GSM310049", "GSM310050" ], "type": "tissue", "id": "GDS3701_7" }, { "dataset_id": "GDS3701", "description": "liver", "sample_id": [ "GSM310051", "GSM310052" ], "type": "tissue", "id": "GDS3701_8" }, { "dataset_id": "GDS3701", "description": "heart", "sample_id": [ "GSM310053", "GSM310054" ], "type": "tissue", "id": "GDS3701_9" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3701", "version": 1.0, "instances": "20", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3701.tab", "compression": "gz" } ], [ [ "GDS3702.tab" ], { "title": "In vitro pineal gland organ culture response to adrenergic/cAMP stimulation (Expt. C)", "description": "Analysis of pineal organ cultures treated with norepinephrine (NE) and cAMP. Effects of forskolin also examined. Previous studies of night/day differentially expressed genes suggest control by NE/cAMP signaling. Results of this study expand the scope of the NE/cAMP regulatory cascade.", "type": "Expression profiling by array", "pubmed_id": [ "19103603", "21367864" ], "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12343", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3702", "description": "untreated", "sample_id": [ "GSM310055", "GSM310056", "GSM310057" ], "type": "agent", "id": "GDS3702_1" }, { "dataset_id": "GDS3702", "description": "norepinephrine", "sample_id": [ "GSM310058", "GSM310059", "GSM310060" ], "type": "agent", "id": "GDS3702_2" }, { "dataset_id": "GDS3702", "description": "cAMP", "sample_id": [ "GSM310061", "GSM310062", "GSM310063" ], "type": "agent", "id": "GDS3702_3" }, { "dataset_id": "GDS3702", "description": "forskolin", "sample_id": [ "GSM310064", "GSM310065", "GSM310066" ], "type": "agent", "id": "GDS3702_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3702", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3702.tab", "compression": "gz" } ], [ [ "GDS3703.tab" ], { "title": "Addictive drugs effect on brain striatum: time course", "description": "Analysis of brain striata of C57BL/6J animals treated for up to 8 hours with cocaine, ethanol, heroin, methamphetamine, morphine, or nicotine. Results provide insight into the molecular mechanisms underlying addiction to different classes of drugs of abuse.", "type": "Expression profiling by array", "pubmed_id": [ "20459597", "24010892" ], "platform": "GPL6105", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46632", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "108", "value_type": "transformed count", "reference_series": "GSE15774", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3703", "description": "cocaine", "sample_id": [ "GSM396134", "GSM396135", "GSM396136", "GSM396137", "GSM396148", "GSM396149", "GSM396150", "GSM396151", "GSM396164", "GSM396165", "GSM396166", "GSM396167" ], "type": "agent", "id": "GDS3703_1" }, { "dataset_id": "GDS3703", "description": "ethanol", "sample_id": [ "GSM396180", "GSM396184", "GSM396188", "GSM396193", "GSM396195", "GSM396203", "GSM396208", "GSM396213", "GSM396218", "GSM396223", "GSM396228", "GSM396233" ], "type": "agent", "id": "GDS3703_2" }, { "dataset_id": "GDS3703", "description": "heroin", "sample_id": [ "GSM396128", "GSM396129", "GSM396138", "GSM396139", "GSM396152", "GSM396153", "GSM396154", "GSM396155", "GSM396168", "GSM396169", "GSM396170", "GSM396171" ], "type": "agent", "id": "GDS3703_3" }, { "dataset_id": "GDS3703", "description": "methamphetamine", "sample_id": [ "GSM396179", "GSM396183", "GSM396192", "GSM396194", "GSM396199", "GSM396202", "GSM396207", "GSM396212", "GSM396217", "GSM396222", "GSM396227", "GSM396232" ], "type": "agent", "id": "GDS3703_4" }, { "dataset_id": "GDS3703", "description": "morphine", "sample_id": [ "GSM396130", "GSM396131", "GSM396132", "GSM396133", "GSM396156", "GSM396157", "GSM396158", "GSM396159", "GSM396172", "GSM396173", "GSM396174", "GSM396175" ], "type": "agent", "id": "GDS3703_5" }, { "dataset_id": "GDS3703", "description": "nicotine", "sample_id": [ "GSM396176", "GSM396181", "GSM396185", "GSM396189", "GSM396196", "GSM396204", "GSM396209", "GSM396214", "GSM396219", "GSM396224", "GSM396229", "GSM396234" ], "type": "agent", "id": "GDS3703_6" }, { "dataset_id": "GDS3703", "description": "saline", "sample_id": [ "GSM396140", "GSM396141", "GSM396142", "GSM396143", "GSM396144", "GSM396145", "GSM396146", "GSM396147", "GSM396160", "GSM396161", "GSM396162", "GSM396163", "GSM396177", "GSM396186", "GSM396190", "GSM396197", "GSM396200", "GSM396205", "GSM396210", "GSM396215", "GSM396220", "GSM396225", "GSM396230", "GSM396235" ], "type": "agent", "id": "GDS3703_7" }, { "dataset_id": "GDS3703", "description": "none", "sample_id": [ "GSM396178", "GSM396182", "GSM396187", "GSM396191", "GSM396198", "GSM396201", "GSM396206", "GSM396211", "GSM396216", "GSM396221", "GSM396226", "GSM396231" ], "type": "agent", "id": "GDS3703_8" }, { "dataset_id": "GDS3703", "description": "1 h", "sample_id": [ "GSM396130", "GSM396134", "GSM396138", "GSM396140", "GSM396144", "GSM396148", "GSM396152", "GSM396156", "GSM396160", "GSM396164", "GSM396168", "GSM396172", "GSM396178", "GSM396182", "GSM396186", "GSM396188", "GSM396192", "GSM396196", "GSM396200", "GSM396204", "GSM396208", "GSM396212", "GSM396216", "GSM396220", "GSM396224", "GSM396228", "GSM396232" ], "type": "time", "id": "GDS3703_9" }, { "dataset_id": "GDS3703", "description": "2 h", "sample_id": [ "GSM396131", "GSM396135", "GSM396139", "GSM396141", "GSM396145", "GSM396149", "GSM396153", "GSM396157", "GSM396161", "GSM396165", "GSM396169", "GSM396173", "GSM396179", "GSM396183", "GSM396187", "GSM396189", "GSM396193", "GSM396197", "GSM396201", "GSM396205", "GSM396209", "GSM396213", "GSM396217", "GSM396221", "GSM396225", "GSM396229", "GSM396233" ], "type": "time", "id": "GDS3703_10" }, { "dataset_id": "GDS3703", "description": "4 h", "sample_id": [ "GSM396128", "GSM396132", "GSM396136", "GSM396142", "GSM396146", "GSM396150", "GSM396154", "GSM396158", "GSM396162", "GSM396166", "GSM396170", "GSM396174", "GSM396176", "GSM396180", "GSM396184", "GSM396190", "GSM396194", "GSM396198", "GSM396202", "GSM396206", "GSM396210", "GSM396214", "GSM396218", "GSM396222", "GSM396226", "GSM396230", "GSM396234" ], "type": "time", "id": "GDS3703_11" }, { "dataset_id": "GDS3703", "description": "8 h", "sample_id": [ "GSM396129", "GSM396133", "GSM396137", "GSM396143", "GSM396147", "GSM396151", "GSM396155", "GSM396159", "GSM396163", "GSM396167", "GSM396171", "GSM396175", "GSM396177", "GSM396181", "GSM396185", "GSM396191", "GSM396195", "GSM396199", "GSM396203", "GSM396207", "GSM396211", "GSM396215", "GSM396219", "GSM396223", "GSM396227", "GSM396231", "GSM396235" ], "type": "time", "id": "GDS3703_12" } ], "taxid": "10090", "genes": 33575, "aggregation_function": "mean", "name": "GDS3703", "version": 1.0, "instances": "108", "variables": 33578, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3703.tab", "compression": "gz" } ], [ [ "GDS3704.tab" ], { "title": "Dietary polyunsaturated and saturated fatty acids effect on peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells of individuals before and 6 hours after the consumption of shakes containing either mainly polyunsanturated (PUFA) or saturated fatty acids (SFA). Results provide insight into the molecular basis of the beneficial effect of PUFA on health.", "type": "Expression profiling by array", "pubmed_id": "19923369", "platform": "GPL7144", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "16313", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "84", "value_type": "transformed count", "reference_series": "GSE13466", "order": "none", "update_date": "May 10 2010", "subsets": [ { "dataset_id": "GDS3704", "description": "PUFA consumption", "sample_id": [ "GSM339455", "GSM339456", "GSM339457", "GSM339458", "GSM339459", "GSM339460", "GSM339461", "GSM339462", "GSM339463", "GSM339464", "GSM339465", "GSM339466", "GSM339467", "GSM339468", "GSM339469", "GSM339470", "GSM339471", "GSM339472", "GSM339473", "GSM339474", "GSM339475", "GSM339476", "GSM339477", "GSM339478", "GSM339479", "GSM339480", "GSM339481", "GSM339482", "GSM339483", "GSM339484", "GSM339485", "GSM339486", "GSM339487", "GSM339488", "GSM339489", "GSM339490", "GSM339491", "GSM339492", "GSM339493", "GSM339494", "GSM339495", "GSM339496" ], "type": "protocol", "id": "GDS3704_1" }, { "dataset_id": "GDS3704", "description": "SFA consumption", "sample_id": [ "GSM339497", "GSM339498", "GSM339499", "GSM339500", "GSM339501", "GSM339502", "GSM339503", "GSM339504", "GSM339505", "GSM339506", "GSM339507", "GSM339508", "GSM339509", "GSM339510", "GSM339511", "GSM339512", "GSM339513", "GSM339514", "GSM339515", "GSM339516", "GSM339517", "GSM339518", "GSM339519", "GSM339520", "GSM339521", "GSM339522", "GSM339523", "GSM339524", "GSM339525", "GSM339526", "GSM339527", "GSM339528", "GSM339529", "GSM339530", "GSM339531", "GSM339532", "GSM339533", "GSM339534", "GSM339535", "GSM339536", "GSM339537", "GSM339538" ], "type": "protocol", "id": "GDS3704_2" }, { "dataset_id": "GDS3704", "description": "baseline", "sample_id": [ "GSM339455", "GSM339456", "GSM339457", "GSM339458", "GSM339459", "GSM339460", "GSM339461", "GSM339462", "GSM339463", "GSM339464", "GSM339465", "GSM339466", "GSM339467", "GSM339468", "GSM339469", "GSM339470", "GSM339471", "GSM339472", "GSM339473", "GSM339474", "GSM339475", "GSM339497", "GSM339498", "GSM339499", "GSM339500", "GSM339501", "GSM339502", "GSM339503", "GSM339504", "GSM339505", "GSM339506", "GSM339507", "GSM339508", "GSM339509", "GSM339510", "GSM339511", "GSM339512", "GSM339513", "GSM339514", "GSM339515", "GSM339516", "GSM339517" ], "type": "agent", "id": "GDS3704_3" }, { "dataset_id": "GDS3704", "description": "PUFA", "sample_id": [ "GSM339476", "GSM339477", "GSM339478", "GSM339479", "GSM339480", "GSM339481", "GSM339482", "GSM339483", "GSM339484", "GSM339485", "GSM339486", "GSM339487", "GSM339488", "GSM339489", "GSM339490", "GSM339491", "GSM339492", "GSM339493", "GSM339494", "GSM339495", "GSM339496" ], "type": "agent", "id": "GDS3704_4" }, { "dataset_id": "GDS3704", "description": "SUFA", "sample_id": [ "GSM339518", "GSM339519", "GSM339520", "GSM339521", "GSM339522", "GSM339523", "GSM339524", "GSM339525", "GSM339526", "GSM339527", "GSM339528", "GSM339529", "GSM339530", "GSM339531", "GSM339532", "GSM339533", "GSM339534", "GSM339535", "GSM339536", "GSM339537", "GSM339538" ], "type": "agent", "id": "GDS3704_5" }, { "dataset_id": "GDS3704", "description": "subject 1a", "sample_id": [ "GSM339455", "GSM339476" ], "type": "individual", "id": "GDS3704_6" }, { "dataset_id": "GDS3704", "description": "subject 2a", "sample_id": [ "GSM339456", "GSM339477" ], "type": "individual", "id": "GDS3704_7" }, { "dataset_id": "GDS3704", "description": "subject 3a", "sample_id": [ "GSM339457", "GSM339478" ], "type": "individual", "id": "GDS3704_8" }, { "dataset_id": "GDS3704", "description": "subject 4a", "sample_id": [ "GSM339458", "GSM339479" ], "type": "individual", "id": "GDS3704_9" }, { "dataset_id": "GDS3704", "description": "subject 5a", "sample_id": [ "GSM339459", "GSM339480" ], "type": "individual", "id": "GDS3704_10" }, { "dataset_id": "GDS3704", "description": "subject 6a", "sample_id": [ "GSM339460", "GSM339481" ], "type": "individual", "id": "GDS3704_11" }, { "dataset_id": "GDS3704", "description": "subject 7a", "sample_id": [ "GSM339461", "GSM339482" ], "type": "individual", "id": "GDS3704_12" }, { "dataset_id": "GDS3704", "description": "subject 10a", "sample_id": [ "GSM339462", "GSM339483" ], "type": "individual", "id": "GDS3704_13" }, { "dataset_id": "GDS3704", "description": "subject 11a", "sample_id": [ "GSM339463", "GSM339484" ], "type": "individual", "id": "GDS3704_14" }, { "dataset_id": "GDS3704", "description": "subject 12a", "sample_id": [ "GSM339464", "GSM339485" ], "type": "individual", "id": "GDS3704_15" }, { "dataset_id": "GDS3704", "description": "subject 14a", "sample_id": [ "GSM339465", "GSM339486" ], "type": "individual", "id": "GDS3704_16" }, { "dataset_id": "GDS3704", "description": "subject 15a", "sample_id": [ "GSM339466", "GSM339487" ], "type": "individual", "id": "GDS3704_17" }, { "dataset_id": "GDS3704", "description": "subject 16a", "sample_id": [ "GSM339467", "GSM339488" ], "type": "individual", "id": "GDS3704_18" }, { "dataset_id": "GDS3704", "description": "subject 17a", "sample_id": [ "GSM339468", "GSM339489" ], "type": "individual", "id": "GDS3704_19" }, { "dataset_id": "GDS3704", "description": "subject 20a", "sample_id": [ "GSM339469", "GSM339490" ], "type": "individual", "id": "GDS3704_20" }, { "dataset_id": "GDS3704", "description": "subject 21a", "sample_id": [ "GSM339470", "GSM339491" ], "type": "individual", "id": "GDS3704_21" }, { "dataset_id": "GDS3704", "description": "subject 22a", "sample_id": [ "GSM339471", "GSM339492" ], "type": "individual", "id": "GDS3704_22" }, { "dataset_id": "GDS3704", "description": "subject 23a", "sample_id": [ "GSM339472", "GSM339493" ], "type": "individual", "id": "GDS3704_23" }, { "dataset_id": "GDS3704", "description": "subject 24a", "sample_id": [ "GSM339473", "GSM339494" ], "type": "individual", "id": "GDS3704_24" }, { "dataset_id": "GDS3704", "description": "subject 25a", "sample_id": [ "GSM339474", "GSM339495" ], "type": "individual", "id": "GDS3704_25" }, { "dataset_id": "GDS3704", "description": "subject 27a", "sample_id": [ "GSM339475", "GSM339496" ], "type": "individual", "id": "GDS3704_26" }, { "dataset_id": "GDS3704", "description": "subject 1b", "sample_id": [ "GSM339497", "GSM339518" ], "type": "individual", "id": "GDS3704_27" }, { "dataset_id": "GDS3704", "description": "subject 2b", "sample_id": [ "GSM339498", "GSM339519" ], "type": "individual", "id": "GDS3704_28" }, { "dataset_id": "GDS3704", "description": "subject 3b", "sample_id": [ "GSM339499", "GSM339520" ], "type": "individual", "id": "GDS3704_29" }, { "dataset_id": "GDS3704", "description": "subject 4b", "sample_id": [ "GSM339500", "GSM339521" ], "type": "individual", "id": "GDS3704_30" }, { "dataset_id": "GDS3704", "description": "subject 5b", "sample_id": [ "GSM339501", "GSM339522" ], "type": "individual", "id": "GDS3704_31" }, { "dataset_id": "GDS3704", "description": "subject 6b", "sample_id": [ "GSM339502", "GSM339523" ], "type": "individual", "id": "GDS3704_32" }, { "dataset_id": "GDS3704", "description": "subject 7b", "sample_id": [ "GSM339503", "GSM339524" ], "type": "individual", "id": "GDS3704_33" }, { "dataset_id": "GDS3704", "description": "subject 10b", "sample_id": [ "GSM339504", "GSM339525" ], "type": "individual", "id": "GDS3704_34" }, { "dataset_id": "GDS3704", "description": "subject 11b", "sample_id": [ "GSM339505", "GSM339526" ], "type": "individual", "id": "GDS3704_35" }, { "dataset_id": "GDS3704", "description": "subject 12b", "sample_id": [ "GSM339506", "GSM339527" ], "type": "individual", "id": "GDS3704_36" }, { "dataset_id": "GDS3704", "description": "subject 14b", "sample_id": [ "GSM339507", "GSM339528" ], "type": "individual", "id": "GDS3704_37" }, { "dataset_id": "GDS3704", "description": "subject 15b", "sample_id": [ "GSM339508", "GSM339529" ], "type": "individual", "id": "GDS3704_38" }, { "dataset_id": "GDS3704", "description": "subject 16b", "sample_id": [ "GSM339509", "GSM339530" ], "type": "individual", "id": "GDS3704_39" }, { "dataset_id": "GDS3704", "description": "subject 17b", "sample_id": [ "GSM339510", "GSM339531" ], "type": "individual", "id": "GDS3704_40" }, { "dataset_id": "GDS3704", "description": "subject 20b", "sample_id": [ "GSM339511", "GSM339532" ], "type": "individual", "id": "GDS3704_41" }, { "dataset_id": "GDS3704", "description": "subject 21b", "sample_id": [ "GSM339512", "GSM339533" ], "type": "individual", "id": "GDS3704_42" }, { "dataset_id": "GDS3704", "description": "subject 22b", "sample_id": [ "GSM339513", "GSM339534" ], "type": "individual", "id": "GDS3704_43" }, { "dataset_id": "GDS3704", "description": "subject 23b", "sample_id": [ "GSM339514", "GSM339535" ], "type": "individual", "id": "GDS3704_44" }, { "dataset_id": "GDS3704", "description": "subject 24b", "sample_id": [ "GSM339515", "GSM339536" ], "type": "individual", "id": "GDS3704_45" }, { "dataset_id": "GDS3704", "description": "subject 25b", "sample_id": [ "GSM339516", "GSM339537" ], "type": "individual", "id": "GDS3704_46" }, { "dataset_id": "GDS3704", "description": "subject 27b", "sample_id": [ "GSM339517", "GSM339538" ], "type": "individual", "id": "GDS3704_47" } ], "taxid": "9606", "genes": 16193, "aggregation_function": "mean", "name": "GDS3704", "version": 1.0, "instances": "84", "variables": 16197, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3704.tab", "compression": "gz" } ], [ [ "GDS3705.tab" ], { "title": "Progressive pulmonary sarcoidosis", "description": "Comparison of lungs from patients with nodular self-limiting pulmonary sarcoidosis (PS) to those with progressive fibrotic PS. About 60-70% of patients with PS have disease that resolves spontaneously, the rest follow a chronic course. Results provide insight into the pathogenesis of progressive PS.", "type": "Expression profiling by array", "pubmed_id": "20194811", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE19976", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3705", "description": "nodular self-limiting sarcoidosis", "sample_id": [ "GSM499117", "GSM499118", "GSM499119", "GSM499120", "GSM499121", "GSM499122", "GSM499123", "GSM499124" ], "type": "disease state", "id": "GDS3705_1" }, { "dataset_id": "GDS3705", "description": "progressive fibrotic sarcoidosis", "sample_id": [ "GSM499125", "GSM499126", "GSM499127", "GSM499128", "GSM499129", "GSM499130", "GSM499131" ], "type": "disease state", "id": "GDS3705_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3705", "version": 1.0, "instances": "15", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3705.tab", "compression": "gz" } ], [ [ "GDS3706.tab" ], { "title": "Benzo[a]pyrene diol epoxide effect on lung WI-38 fibroblasts: dose-response", "description": "Analysis of normal lung WI-38 fibroblasts exposed to various concentrations of the carcinogen benzo[a]pyrene diol epoxide (BPDE). BPDE is a metabolite of benzo[a]pyrene, a component of cigarette smoke. Results provide insight into the molecular response of normal lung fibroblasts to BPDE.", "type": "Expression profiling by array", "pubmed_id": "20382639", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE19510", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3706", "description": "vehicle", "sample_id": [ "GSM484752", "GSM484813", "GSM484814", "GSM484815" ], "type": "agent", "id": "GDS3706_1" }, { "dataset_id": "GDS3706", "description": "BPDE", "sample_id": [ "GSM484816", "GSM484817", "GSM484818", "GSM484819", "GSM486528", "GSM486529", "GSM486530", "GSM486531", "GSM486532", "GSM486533" ], "type": "agent", "id": "GDS3706_2" }, { "dataset_id": "GDS3706", "description": "control", "sample_id": [ "GSM484752", "GSM484813", "GSM484814", "GSM484815" ], "type": "dose", "id": "GDS3706_3" }, { "dataset_id": "GDS3706", "description": "0.1 uM", "sample_id": [ "GSM486531", "GSM486532", "GSM486533" ], "type": "dose", "id": "GDS3706_4" }, { "dataset_id": "GDS3706", "description": "0.5 uM", "sample_id": [ "GSM486528", "GSM486529", "GSM486530" ], "type": "dose", "id": "GDS3706_5" }, { "dataset_id": "GDS3706", "description": "1 uM", "sample_id": [ "GSM484816", "GSM484817", "GSM484818", "GSM484819" ], "type": "dose", "id": "GDS3706_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3706", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3706.tab", "compression": "gz" } ], [ [ "GDS3707.tab" ], { "title": "Acute ethanol exposure: time course", "description": "Analysis of heads of animals exposed to ethanol vapor for up to 240 minutes. Increased ethanol intake is facilitated by the development of tolerance to the aversive and pleasurable effects of ethanol. Results provide insight into the molecular mechanisms underlying ethanol tolerance development.", "type": "Expression profiling by array", "pubmed_id": "19951294", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE18208", "order": "none", "update_date": "May 11 2010", "subsets": [ { "dataset_id": "GDS3707", "description": "humidified air", "sample_id": [ "GSM455231", "GSM455232", "GSM455233", "GSM455234", "GSM455235", "GSM455236", "GSM455237" ], "type": "agent", "id": "GDS3707_1" }, { "dataset_id": "GDS3707", "description": "ethanol", "sample_id": [ "GSM455238", "GSM455239", "GSM455240", "GSM455241", "GSM455242", "GSM455243", "GSM455244" ], "type": "agent", "id": "GDS3707_2" }, { "dataset_id": "GDS3707", "description": "untreated", "sample_id": [ "GSM455245", "GSM455246" ], "type": "agent", "id": "GDS3707_3" }, { "dataset_id": "GDS3707", "description": "control", "sample_id": [ "GSM455245", "GSM455246" ], "type": "time", "id": "GDS3707_4" }, { "dataset_id": "GDS3707", "description": "30 min", "sample_id": [ "GSM455231", "GSM455238" ], "type": "time", "id": "GDS3707_5" }, { "dataset_id": "GDS3707", "description": "60 min", "sample_id": [ "GSM455232", "GSM455239" ], "type": "time", "id": "GDS3707_6" }, { "dataset_id": "GDS3707", "description": "90 min", "sample_id": [ "GSM455233", "GSM455240" ], "type": "time", "id": "GDS3707_7" }, { "dataset_id": "GDS3707", "description": "120 min", "sample_id": [ "GSM455234", "GSM455241" ], "type": "time", "id": "GDS3707_8" }, { "dataset_id": "GDS3707", "description": "150 min", "sample_id": [ "GSM455235", "GSM455242" ], "type": "time", "id": "GDS3707_9" }, { "dataset_id": "GDS3707", "description": "210 min", "sample_id": [ "GSM455236", "GSM455243" ], "type": "time", "id": "GDS3707_10" }, { "dataset_id": "GDS3707", "description": "240 min", "sample_id": [ "GSM455237", "GSM455244" ], "type": "time", "id": "GDS3707_11" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3707", "version": 1.0, "instances": "16", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3707.tab", "compression": "gz" } ], [ [ "GDS3709.tab" ], { "title": "Cigarette smoke effect on the oral mucosa", "description": "Analysis of oral mucosae from 40 cigarette smokers and 40 age and gender matched never-smokers. Results provide insight into the carcinogenic effects of cigarette smoke.", "type": "Expression profiling by array", "pubmed_id": "20179299", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "count", "reference_series": "GSE17913", "order": "none", "update_date": "May 13 2010", "subsets": [ { "dataset_id": "GDS3709", "description": "female", "sample_id": [ "GSM447400", "GSM447401", "GSM447402", "GSM447403", "GSM447405", "GSM447411", "GSM447413", "GSM447415", "GSM447416", "GSM447418", "GSM447422", "GSM447424", "GSM447425", "GSM447427", "GSM447428", "GSM447429", "GSM447430", "GSM447431", "GSM447432", "GSM447434", "GSM447435", "GSM447440", "GSM447442", "GSM447444", "GSM447448", "GSM447449", "GSM447450", "GSM447451", "GSM447452", "GSM447458", "GSM447461", "GSM447462", "GSM447463", "GSM447464", "GSM447467", "GSM447468", "GSM447469", "GSM447472", "GSM447473" ], "type": "gender", "id": "GDS3709_1" }, { "dataset_id": "GDS3709", "description": "male", "sample_id": [ "GSM447398", "GSM447399", "GSM447404", "GSM447406", "GSM447407", "GSM447408", "GSM447409", "GSM447410", "GSM447412", "GSM447414", "GSM447417", "GSM447419", "GSM447420", "GSM447421", "GSM447423", "GSM447426", "GSM447433", "GSM447436", "GSM447437", "GSM447438", "GSM447439", "GSM447441", "GSM447443", "GSM447445", "GSM447446", "GSM447447", "GSM447453", "GSM447454", "GSM447455", "GSM447456", "GSM447457", "GSM447459", "GSM447460", "GSM447465", "GSM447466", "GSM447470", "GSM447471", "GSM447474", "GSM447475", "GSM447476" ], "type": "gender", "id": "GDS3709_2" }, { "dataset_id": "GDS3709", "description": "cigarette smoke", "sample_id": [ "GSM447401", "GSM447404", "GSM447406", "GSM447407", "GSM447409", "GSM447411", "GSM447412", "GSM447413", "GSM447415", "GSM447416", "GSM447425", "GSM447426", "GSM447430", "GSM447433", "GSM447435", "GSM447439", "GSM447440", "GSM447441", "GSM447443", "GSM447444", "GSM447445", "GSM447446", "GSM447448", "GSM447449", "GSM447450", "GSM447452", "GSM447453", "GSM447455", "GSM447456", "GSM447458", "GSM447459", "GSM447461", "GSM447464", "GSM447466", "GSM447468", "GSM447470", "GSM447472", "GSM447474", "GSM447475" ], "type": "agent", "id": "GDS3709_3" }, { "dataset_id": "GDS3709", "description": "control", "sample_id": [ "GSM447398", "GSM447399", "GSM447400", "GSM447402", "GSM447403", "GSM447405", "GSM447408", "GSM447410", "GSM447414", "GSM447417", "GSM447418", "GSM447419", "GSM447420", "GSM447421", "GSM447422", "GSM447423", "GSM447424", "GSM447427", "GSM447428", "GSM447429", "GSM447431", "GSM447432", "GSM447434", "GSM447436", "GSM447437", "GSM447438", "GSM447442", "GSM447447", "GSM447451", "GSM447454", "GSM447457", "GSM447460", "GSM447462", "GSM447463", "GSM447465", "GSM447467", "GSM447469", "GSM447471", "GSM447473", "GSM447476" ], "type": "agent", "id": "GDS3709_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3709", "version": 1.0, "instances": "79", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3709.tab", "compression": "gz" } ], [ [ "GDS3710.tab" ], { "title": "TGF-beta-induced epithelial-mesenchymal transition model", "description": "Analysis of A549 epithelial cells treated for up to 72 hours with TGF-beta to induce epithelial-mesenchymal transition (EMT). EMT is a developmental process that facilitates the dispersion of cells. A similar process is reactivated in cancer cells as an early event during tumor metastasis.", "type": "Expression profiling by array", "pubmed_id": "20007254", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE17708", "order": "none", "update_date": "May 13 2010", "subsets": [ { "dataset_id": "GDS3710", "description": "untreated", "sample_id": [ "GSM442026", "GSM442027", "GSM442028" ], "type": "agent", "id": "GDS3710_1" }, { "dataset_id": "GDS3710", "description": "TGF-beta", "sample_id": [ "GSM442029", "GSM442030", "GSM442031", "GSM442032", "GSM442033", "GSM442034", "GSM442035", "GSM442036", "GSM442037", "GSM442038", "GSM442039", "GSM442040", "GSM442041", "GSM442042", "GSM442043", "GSM442044", "GSM442045", "GSM442046", "GSM442047", "GSM442048", "GSM442049", "GSM442050", "GSM442051" ], "type": "agent", "id": "GDS3710_2" }, { "dataset_id": "GDS3710", "description": "control", "sample_id": [ "GSM442026", "GSM442027", "GSM442028" ], "type": "time", "id": "GDS3710_3" }, { "dataset_id": "GDS3710", "description": "0.5 h", "sample_id": [ "GSM442029", "GSM442030", "GSM442031" ], "type": "time", "id": "GDS3710_4" }, { "dataset_id": "GDS3710", "description": "1 h", "sample_id": [ "GSM442032", "GSM442033", "GSM442034" ], "type": "time", "id": "GDS3710_5" }, { "dataset_id": "GDS3710", "description": "2 h", "sample_id": [ "GSM442035", "GSM442036" ], "type": "time", "id": "GDS3710_6" }, { "dataset_id": "GDS3710", "description": "4 h", "sample_id": [ "GSM442037", "GSM442038", "GSM442039" ], "type": "time", "id": "GDS3710_7" }, { "dataset_id": "GDS3710", "description": "8 h", "sample_id": [ "GSM442040", "GSM442041", "GSM442042" ], "type": "time", "id": "GDS3710_8" }, { "dataset_id": "GDS3710", "description": "16 h", "sample_id": [ "GSM442043", "GSM442044", "GSM442045" ], "type": "time", "id": "GDS3710_9" }, { "dataset_id": "GDS3710", "description": "24 h", "sample_id": [ "GSM442046", "GSM442047", "GSM442048" ], "type": "time", "id": "GDS3710_10" }, { "dataset_id": "GDS3710", "description": "72 h", "sample_id": [ "GSM442049", "GSM442050", "GSM442051" ], "type": "time", "id": "GDS3710_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3710", "version": 1.0, "instances": "26", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3710.tab", "compression": "gz" } ], [ [ "GDS3711.tab" ], { "title": "Asthmatic atopic epithelium", "description": "Analysis of airway epithelial cells (AEC) from children with asthma and healthy non-atopic controls. Epithelial cells from asthmatic children fail to heal a wound in vitro. Results provide insight into the molecular mechanisms underlying dysregulated AEC repair.", "type": "Expression profiling by array", "pubmed_id": "20110557", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE18965", "order": "none", "update_date": "Jun 17 2010", "subsets": [ { "dataset_id": "GDS3711", "description": "asthma atopic", "sample_id": [ "GSM469518", "GSM469520", "GSM469522", "GSM469523", "GSM469509", "GSM469510", "GSM469511", "GSM469512", "GSM469514" ], "type": "disease state", "id": "GDS3711_1" }, { "dataset_id": "GDS3711", "description": "healthy non-atopic", "sample_id": [ "GSM469515", "GSM469516", "GSM469517", "GSM469519", "GSM469521", "GSM469508", "GSM469513" ], "type": "disease state", "id": "GDS3711_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3711", "version": 1.0, "instances": "16", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3711.tab", "compression": "gz" } ], [ [ "GDS3712.tab" ], { "title": "Nephrosclerosis: glomeruli", "description": "Analysis of glomeruli microdissected from renal biopsy specimens from 14 patients with nephrosclerosis (NSC). Tumor-free kidney specimens from patients undergoing tumor nephrectomy (TN) served as controls. Results provide insight into the role of hypoxia in glomerulopathies such as NSC.", "type": "Expression profiling by array", "pubmed_id": "20019191", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE20602", "order": "none", "update_date": "Jul 01 2010", "subsets": [ { "dataset_id": "GDS3712", "description": "control (TN)", "sample_id": [ "GSM517372", "GSM517371", "GSM517370", "GSM517369" ], "type": "disease state", "id": "GDS3712_1" }, { "dataset_id": "GDS3712", "description": "Nephrosclerosis (NSC)", "sample_id": [ "GSM517361", "GSM517360", "GSM517359", "GSM517358", "GSM517357", "GSM517356", "GSM517368", "GSM517367", "GSM517366", "GSM517365", "GSM517364", "GSM517363", "GSM517362", "GSM517355" ], "type": "disease state", "id": "GDS3712_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3712", "version": 1.0, "instances": "18", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3712.tab", "compression": "gz" } ], [ [ "GDS3713.tab" ], { "title": "Smoking effect on B lymphocytes in females", "description": "Analysis of peripheral circulating B cells from smoking and non-smoking healthy US white females. B cells are directly associated with the onset and development of many smoking-induced diseases. Results provide insight into the molecular basis of B cell involvement in smoking-related pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20217071", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "count", "reference_series": "GSE18723", "order": "none", "update_date": "Jul 11 2010", "subsets": [ { "dataset_id": "GDS3713", "description": "control", "sample_id": [ "GSM464697", "GSM464698", "GSM464699", "GSM464700", "GSM464701", "GSM464702", "GSM464703", "GSM464704", "GSM464705", "GSM464706", "GSM464707", "GSM464708", "GSM464709", "GSM464710", "GSM464711", "GSM464712", "GSM464713", "GSM464714", "GSM464715", "GSM464716", "GSM464717", "GSM464718", "GSM464719", "GSM464720", "GSM464721", "GSM464722", "GSM464723", "GSM464724", "GSM464725", "GSM464726", "GSM464727", "GSM464728", "GSM464729", "GSM464730", "GSM464731", "GSM464732", "GSM464733", "GSM464734", "GSM464735", "GSM464736" ], "type": "stress", "id": "GDS3713_1" }, { "dataset_id": "GDS3713", "description": "cigarette smoke", "sample_id": [ "GSM464658", "GSM464659", "GSM464660", "GSM464661", "GSM464662", "GSM464663", "GSM464664", "GSM464665", "GSM464666", "GSM464667", "GSM464668", "GSM464669", "GSM464670", "GSM464671", "GSM464672", "GSM464673", "GSM464674", "GSM464675", "GSM464676", "GSM464677", "GSM464678", "GSM464679", "GSM464680", "GSM464681", "GSM464682", "GSM464683", "GSM464684", "GSM464685", "GSM464686", "GSM464687", "GSM464688", "GSM464689", "GSM464690", "GSM464691", "GSM464692", "GSM464693", "GSM464694", "GSM464695", "GSM464696" ], "type": "stress", "id": "GDS3713_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3713", "version": 1.0, "instances": "79", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3713.tab", "compression": "gz" } ], [ [ "GDS3714.tab" ], { "title": "Ecotropic viral integration site-1 expression effect on primary bone marrow cells", "description": "Analysis of C57BL/6 mononuclear bone marrow cells transduced with ecotropic viral integration site-1 (EVI-1). EVI-1 is one of the dominant oncogenes associated with murine and human myeloid leukemia. Results provide insight into the mechanistic basis of Evi1-mediated leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "21289308", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE22434", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3714", "description": "control", "sample_id": [ "GSM557504", "GSM557505", "GSM557506", "GSM557507" ], "type": "protocol", "id": "GDS3714_1" }, { "dataset_id": "GDS3714", "description": "Evi1 retroviral transduction", "sample_id": [ "GSM557508", "GSM557509", "GSM557510", "GSM557511" ], "type": "protocol", "id": "GDS3714_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3714", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3714.tab", "compression": "gz" } ], [ [ "GDS3715.tab" ], { "title": "Insulin effect on skeletal muscle", "description": "Analysis of vastus lateralis muscle biopsies from insulin-sensitive subjects, insulin-resistant subjects, and diabetic patients, following insulin treatment. Results provide insight into the molecular basis of insulin action in skeletal muscle and the underlying defects causing insulin resistance.", "type": "Expression profiling by array", "pubmed_id": [ "17709892", "21109598" ], "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "110", "value_type": "transformed count", "reference_series": "GSE22309", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3715", "description": "insulin sensitive", "sample_id": [ "GSM555237", "GSM555238", "GSM555239", "GSM555240", "GSM555241", "GSM555242", "GSM555243", "GSM555244", "GSM555245", "GSM555246", "GSM555247", "GSM555248", "GSM555249", "GSM555250", "GSM555251", "GSM555252", "GSM555253", "GSM555254", "GSM555255", "GSM555256", "GSM555257", "GSM555258", "GSM555259", "GSM555260", "GSM555261", "GSM555262", "GSM555263", "GSM555264", "GSM555265", "GSM555266", "GSM555267", "GSM555268", "GSM555269", "GSM555270", "GSM555271", "GSM555272", "GSM555273", "GSM555274", "GSM555275", "GSM555276" ], "type": "disease state", "id": "GDS3715_1" }, { "dataset_id": "GDS3715", "description": "insulin resistant", "sample_id": [ "GSM555277", "GSM555278", "GSM555279", "GSM555280", "GSM555281", "GSM555282", "GSM555283", "GSM555284", "GSM555285", "GSM555286", "GSM555287", "GSM555288", "GSM555289", "GSM555290", "GSM555291", "GSM555292", "GSM555293", "GSM555294", "GSM555295", "GSM555296", "GSM555297", "GSM555298", "GSM555299", "GSM555300", "GSM555301", "GSM555302", "GSM555303", "GSM555304", "GSM555305", "GSM555306", "GSM555307", "GSM555308", "GSM555309", "GSM555310", "GSM555311", "GSM555312", "GSM555313", "GSM555314", "GSM555315", "GSM555316" ], "type": "disease state", "id": "GDS3715_2" }, { "dataset_id": "GDS3715", "description": "diabetic", "sample_id": [ "GSM555317", "GSM555318", "GSM555319", "GSM555320", "GSM555321", "GSM555322", "GSM555323", "GSM555324", "GSM555325", "GSM555326", "GSM555327", "GSM555328", "GSM555329", "GSM555330", "GSM555331", "GSM555332", "GSM555333", "GSM555334", "GSM555335", "GSM555336", "GSM555337", "GSM555338", "GSM555339", "GSM555340", "GSM555341", "GSM555342", "GSM555343", "GSM555344", "GSM555345", "GSM555346" ], "type": "disease state", "id": "GDS3715_3" }, { "dataset_id": "GDS3715", "description": "untreated", "sample_id": [ "GSM555237", "GSM555239", "GSM555241", "GSM555243", "GSM555245", "GSM555247", "GSM555249", "GSM555251", "GSM555253", "GSM555255", "GSM555257", "GSM555259", "GSM555261", "GSM555263", "GSM555265", "GSM555267", "GSM555269", "GSM555271", "GSM555273", "GSM555275", "GSM555277", "GSM555279", "GSM555281", "GSM555283", "GSM555285", "GSM555287", "GSM555289", "GSM555291", "GSM555293", "GSM555295", "GSM555297", "GSM555299", "GSM555301", "GSM555303", "GSM555305", "GSM555307", "GSM555309", "GSM555311", "GSM555313", "GSM555315", "GSM555317", "GSM555319", "GSM555321", "GSM555323", "GSM555325", "GSM555327", "GSM555329", "GSM555331", "GSM555333", "GSM555335", "GSM555337", "GSM555339", "GSM555341", "GSM555343", "GSM555345" ], "type": "agent", "id": "GDS3715_4" }, { "dataset_id": "GDS3715", "description": "insulin", "sample_id": [ "GSM555238", "GSM555240", "GSM555242", "GSM555244", "GSM555246", "GSM555248", "GSM555250", "GSM555252", "GSM555254", "GSM555256", "GSM555258", "GSM555260", "GSM555262", "GSM555264", "GSM555266", "GSM555268", "GSM555270", "GSM555272", "GSM555274", "GSM555276", "GSM555278", "GSM555280", "GSM555282", "GSM555284", "GSM555286", "GSM555288", "GSM555290", "GSM555292", "GSM555294", "GSM555296", "GSM555298", "GSM555300", "GSM555302", "GSM555304", "GSM555306", "GSM555308", "GSM555310", "GSM555312", "GSM555314", "GSM555316", "GSM555318", "GSM555320", "GSM555322", "GSM555324", "GSM555326", "GSM555328", "GSM555330", "GSM555332", "GSM555334", "GSM555336", "GSM555338", "GSM555340", "GSM555342", "GSM555344", "GSM555346" ], "type": "agent", "id": "GDS3715_5" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS3715", "version": 1.0, "instances": "110", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3715.tab", "compression": "gz" } ], [ [ "GDS3716.tab" ], { "title": "Breast cancer: histologically normal breast epithelium", "description": "Analysis of histological normal breast epithelia from both ER- and ER+ breast cancer patients and prophylactic mastectomy patients, and normal breast epithelia from reduction mammoplasty patients. Results provide insight into the mechanisms underlying breast cancer initiation and progression.", "type": "Expression profiling by array", "pubmed_id": "20197764", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE20437", "order": "none", "update_date": "Jun 23 2010", "subsets": [ { "dataset_id": "GDS3716", "description": "reduction mammoplasty", "sample_id": [ "GSM512539", "GSM512540", "GSM512541", "GSM512542", "GSM512543", "GSM512544", "GSM512545", "GSM512546", "GSM512547", "GSM512548", "GSM512549", "GSM512550", "GSM512551", "GSM512552", "GSM512553", "GSM512554", "GSM512555", "GSM512556" ], "type": "specimen", "id": "GDS3716_1" }, { "dataset_id": "GDS3716", "description": "prophylactic masectomy", "sample_id": [ "GSM512575", "GSM512576", "GSM512577", "GSM512578", "GSM512579", "GSM512580" ], "type": "specimen", "id": "GDS3716_2" }, { "dataset_id": "GDS3716", "description": "ER- breast cancer", "sample_id": [ "GSM512566", "GSM512567", "GSM512568", "GSM512569", "GSM512570", "GSM512571", "GSM512572", "GSM512573", "GSM512574" ], "type": "specimen", "id": "GDS3716_3" }, { "dataset_id": "GDS3716", "description": "ER+ breast cancer", "sample_id": [ "GSM512557", "GSM512558", "GSM512559", "GSM512560", "GSM512561", "GSM512562", "GSM512563", "GSM512564", "GSM512565" ], "type": "specimen", "id": "GDS3716_4" }, { "dataset_id": "GDS3716", "description": "breast cancer", "sample_id": [ "GSM512557", "GSM512558", "GSM512559", "GSM512560", "GSM512561", "GSM512562", "GSM512563", "GSM512564", "GSM512565", "GSM512566", "GSM512567", "GSM512568", "GSM512569", "GSM512570", "GSM512571", "GSM512572", "GSM512573", "GSM512574" ], "type": "disease state", "id": "GDS3716_5" }, { "dataset_id": "GDS3716", "description": "control", "sample_id": [ "GSM512539", "GSM512540", "GSM512541", "GSM512542", "GSM512543", "GSM512544", "GSM512545", "GSM512546", "GSM512547", "GSM512548", "GSM512549", "GSM512550", "GSM512551", "GSM512552", "GSM512553", "GSM512554", "GSM512555", "GSM512556", "GSM512575", "GSM512576", "GSM512577", "GSM512578", "GSM512579", "GSM512580" ], "type": "disease state", "id": "GDS3716_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3716", "version": 1.0, "instances": "42", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3716.tab", "compression": "gz" } ], [ [ "GDS3717.tab" ], { "title": "NOTCH antagonist SAHM1 effect on T-ALL cell lines", "description": "Analysis of HPB-ALL and KOPT-K1 cells treated with SAHM1, an antagonist of the NOTCH transcription factor. SAHM1 is an alpha-helical hydrocarbon stapled peptide derived from MAML1. Results provide insight into the specificity of the antagonistic effect of SAHM1 on gene expression driven by NOTCH.", "type": "Expression profiling by array", "pubmed_id": "19907488", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE18198", "order": "none", "update_date": "Jun 23 2010", "subsets": [ { "dataset_id": "GDS3717", "description": "KOPT-K1", "sample_id": [ "GSM455115", "GSM455116", "GSM455117", "GSM455121", "GSM455122", "GSM455123" ], "type": "cell line", "id": "GDS3717_1" }, { "dataset_id": "GDS3717", "description": "HPB-ALL", "sample_id": [ "GSM455118", "GSM455119", "GSM455120", "GSM455124", "GSM455125", "GSM455126" ], "type": "cell line", "id": "GDS3717_2" }, { "dataset_id": "GDS3717", "description": "control", "sample_id": [ "GSM455115", "GSM455116", "GSM455117", "GSM455118", "GSM455119", "GSM455120" ], "type": "agent", "id": "GDS3717_3" }, { "dataset_id": "GDS3717", "description": "SAHM1", "sample_id": [ "GSM455121", "GSM455122", "GSM455123", "GSM455124", "GSM455125", "GSM455126" ], "type": "agent", "id": "GDS3717_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3717", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3717.tab", "compression": "gz" } ], [ [ "GDS3718.tab" ], { "title": "Zinc finger Zbtb20 deficiency effect on the developing hippocampus", "description": "Analysis of hippocampi of postnatal day 2 mutants lacking Zbtb20. Zbtb20 is a member of the BTB/POZ zinc finger family. Results provide insight into the role of Zbtb20 in hippocampal development.", "type": "Expression profiling by array", "pubmed_id": "20308569", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE19513", "order": "none", "update_date": "Jun 23 2010", "subsets": [ { "dataset_id": "GDS3718", "description": "wild type", "sample_id": [ "GSM506899", "GSM506900" ], "type": "genotype/variation", "id": "GDS3718_1" }, { "dataset_id": "GDS3718", "description": "Zbtb20 null", "sample_id": [ "GSM506901", "GSM506902" ], "type": "genotype/variation", "id": "GDS3718_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3718", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3718.tab", "compression": "gz" } ], [ [ "GDS3719.tab" ], { "title": "Transcription factor Ovo1 depletion effect on 12 hour post-fertilization embryos", "description": "Analysis of wild-type embryos injected with Ovo1 morpholino antisense oligos. At 12 hpf, the Ovo1 morphants begin showing neural crest (NC) defects wherein a subset of NC cells aggregates in the dorsal midline above the neural tube. Results provide insight into the role of Ovo1 in NC migration.", "type": "Expression profiling by array", "pubmed_id": "20463035", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21539", "order": "none", "update_date": "Jun 24 2010", "subsets": [ { "dataset_id": "GDS3719", "description": "control", "sample_id": [ "GSM537962", "GSM537963", "GSM537964" ], "type": "genotype/variation", "id": "GDS3719_1" }, { "dataset_id": "GDS3719", "description": "Ovo1 morphant", "sample_id": [ "GSM537965", "GSM537966", "GSM537967" ], "type": "genotype/variation", "id": "GDS3719_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS3719", "version": 1.0, "instances": "6", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3719.tab", "compression": "gz" } ], [ [ "GDS3720.tab" ], { "title": "ROR alpha1 deletion effect on skeletal muscle", "description": "Analysis of skeletal muscle (SM) from transgenics deficient in retinoic acid receptor-related orphan receptor (ROR) alpha 1delDE. SM accounts for significant levels of lipid catabolism; ROR alpha is involved in regulating lipid metabolism. Results provide insight into ROR alpha1 signaling in SM.", "type": "Expression profiling by array", "pubmed_id": "20338882", "platform": "GPL6105", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46632", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE20646", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3720", "description": "wild type", "sample_id": [ "GSM518351", "GSM518352", "GSM518353" ], "type": "genotype/variation", "id": "GDS3720_1" }, { "dataset_id": "GDS3720", "description": "RORalpha1delDE", "sample_id": [ "GSM518354", "GSM518355", "GSM518356" ], "type": "genotype/variation", "id": "GDS3720_2" } ], "taxid": "10090", "genes": 33575, "aggregation_function": "mean", "name": "GDS3720", "version": 1.0, "instances": "6", "variables": 33577, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3720.tab", "compression": "gz" } ], [ [ "GDS3721.tab" ], { "title": "Pretreatment breast needle biopsies of locally advanced breast cancer", "description": "Analysis of pretreatment breast cancer (BC) tumors from patients enrolled in a paclitaxel/radiation clinical trial. Patients achieved pathologic complete response (pCR) or partial response (pPR). Results provide insight into molecular markers of pathologic response to paclitaxel/RT treatment of BC.", "type": "Expression profiling by array", "pubmed_id": [ "20068102", "21633166", "20878462" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE22513", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3721", "description": "pCR", "sample_id": [ "GSM559062", "GSM559063", "GSM559064", "GSM559065", "GSM559066", "GSM559067", "GSM559068", "GSM559069" ], "type": "disease state", "id": "GDS3721_1" }, { "dataset_id": "GDS3721", "description": "pPR", "sample_id": [ "GSM559042", "GSM559043", "GSM559044", "GSM559045", "GSM559046", "GSM559047", "GSM559048", "GSM559049", "GSM559050", "GSM559051", "GSM559052", "GSM559053", "GSM559054", "GSM559055", "GSM559056", "GSM559057", "GSM559058", "GSM559059", "GSM559060", "GSM559061" ], "type": "disease state", "id": "GDS3721_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3721", "version": 1.0, "instances": "28", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3721.tab", "compression": "gz" } ], [ [ "GDS3722.tab" ], { "title": "Activator protein-2gamma silencing effect on MCF-7 breast tumor cell line", "description": "Analysis of MCF-7 cells silenced for activator protein (AP)-2\u03b3 transcription factor using three distinct self-targeting sequences (AP-2\u03b3 siRNA1-3). AP-2\u03b3 overexpression in breast tumors is a predictor of poor outcome. Results provide further insight into the role of AP-2\u03b3 in breast carcinoma.", "type": "Expression profiling by array", "pubmed_id": "19798054", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE15481", "order": "none", "update_date": "May 24 2011", "subsets": [ { "dataset_id": "GDS3722", "description": "AP-2 gamma siRNA 1", "sample_id": [ "GSM388424", "GSM388425", "GSM388426" ], "type": "protocol", "id": "GDS3722_1" }, { "dataset_id": "GDS3722", "description": "AP-2 gamma siRNA 2", "sample_id": [ "GSM388427", "GSM388428", "GSM388429" ], "type": "protocol", "id": "GDS3722_2" }, { "dataset_id": "GDS3722", "description": "AP-2 gamma siRNA 3", "sample_id": [ "GSM388430", "GSM388431", "GSM388432" ], "type": "protocol", "id": "GDS3722_3" }, { "dataset_id": "GDS3722", "description": "control (transfection reagent)", "sample_id": [ "GSM388436", "GSM388437", "GSM388438" ], "type": "protocol", "id": "GDS3722_4" }, { "dataset_id": "GDS3722", "description": "Non-silencing control siRNA", "sample_id": [ "GSM388433", "GSM388434", "GSM388435" ], "type": "protocol", "id": "GDS3722_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3722", "version": 1.0, "instances": "15", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3722.tab", "compression": "gz" } ], [ [ "GDS3723.tab" ], { "title": "Low and high aerobic exercise capacity strains: skeletal muscle", "description": "Analysis of gastrocnemius muscle from strains of low and high inherited aerobic exercise capacity; these strains also differ in their risk for metabolic syndrome. Results provide insight into the link between oxygen metabolism and metabolic disease risk factors.", "type": "Expression profiling by array", "pubmed_id": "20643908", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE17190", "order": "none", "update_date": "Mar 04 2013", "subsets": [ { "dataset_id": "GDS3723", "description": "LCR", "sample_id": [ "GSM429923", "GSM429924", "GSM429925", "GSM429926", "GSM429929", "GSM429930", "GSM429933", "GSM429934", "GSM429937", "GSM429938", "GSM429941", "GSM429942" ], "type": "strain", "id": "GDS3723_1" }, { "dataset_id": "GDS3723", "description": "HCR", "sample_id": [ "GSM429920", "GSM429922", "GSM429927", "GSM429928", "GSM429931", "GSM429932", "GSM429935", "GSM429936", "GSM429939", "GSM429940", "GSM429943", "GSM429944" ], "type": "strain", "id": "GDS3723_2" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS3723", "version": 1.0, "instances": "24", "variables": 22035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3723.tab", "compression": "gz" } ], [ [ "GDS3724.tab" ], { "title": "Effects of high-fat maternal diet and transcription factor Cited2 deficiency on embryos", "description": "Analysis of Cited2-deficient, C57BL6/J embryos from high-fat diet mothers. Maternal high-fat diet results in abnormal laterality and cleft palate in Cited2 -/- embryos. Results provide insight into a gene-environment interaction with significant consequences for patterning the developing embryo.", "type": "Expression profiling by array", "pubmed_id": "20566713", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22558", "order": "none", "update_date": "Feb 13 2013", "subsets": [ { "dataset_id": "GDS3724", "description": "wildtype", "sample_id": [ "GSM559819", "GSM559820", "GSM559821", "GSM559825", "GSM559826", "GSM559827" ], "type": "strain", "id": "GDS3724_1" }, { "dataset_id": "GDS3724", "description": "Cited2-/-", "sample_id": [ "GSM559816", "GSM559817", "GSM559818", "GSM559822", "GSM559823", "GSM559824" ], "type": "strain", "id": "GDS3724_2" }, { "dataset_id": "GDS3724", "description": "control maternal diet", "sample_id": [ "GSM559816", "GSM559820", "GSM559822", "GSM559824", "GSM559825", "GSM559826" ], "type": "stress", "id": "GDS3724_3" }, { "dataset_id": "GDS3724", "description": "high fat maternal diet", "sample_id": [ "GSM559817", "GSM559818", "GSM559819", "GSM559827", "GSM559821", "GSM559823" ], "type": "stress", "id": "GDS3724_4" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS3724", "version": 1.0, "instances": "12", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3724.tab", "compression": "gz" } ], [ [ "GDS3725.tab" ], { "title": "Industrial wine yeast strains during fermentation: time course", "description": "Analysis of five industrial wine yeast strains during fermentation. Yeast is an important component of wine fermentation and determines various attributes of the final product. Results provide insight into the differences in wine yeast physiology and metabolism during fermentation.", "type": "Expression profiling by array", "pubmed_id": [ "18990252", "19711068", "19700545", "20418425" ], "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE11651", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS3725", "description": "285", "sample_id": [ "GSM291000", "GSM291001", "GSM291115", "GSM291116", "GSM291117", "GSM291140", "GSM291141", "GSM291142" ], "type": "strain", "id": "GDS3725_1" }, { "dataset_id": "GDS3725", "description": "BM45", "sample_id": [ "GSM290992", "GSM290993", "GSM291462", "GSM291523", "GSM291524", "GSM291555", "GSM296856", "GSM296857" ], "type": "strain", "id": "GDS3725_2" }, { "dataset_id": "GDS3725", "description": "DV10", "sample_id": [ "GSM290989", "GSM290990", "GSM290991", "GSM290994", "GSM290995", "GSM290996", "GSM291538", "GSM291539", "GSM291540" ], "type": "strain", "id": "GDS3725_3" }, { "dataset_id": "GDS3725", "description": "EC1118", "sample_id": [ "GSM290997", "GSM290998", "GSM290999", "GSM291435", "GSM291439", "GSM291445", "GSM291554", "GSM296858", "GSM296859" ], "type": "strain", "id": "GDS3725_4" }, { "dataset_id": "GDS3725", "description": "VIN13", "sample_id": [ "GSM290901", "GSM290902", "GSM290903", "GSM291002", "GSM291003", "GSM291525", "GSM292045", "GSM296860", "GSM296861" ], "type": "strain", "id": "GDS3725_5" }, { "dataset_id": "GDS3725", "description": "Day 2", "sample_id": [ "GSM291115", "GSM291116", "GSM291117", "GSM291462", "GSM291523", "GSM291524", "GSM290989", "GSM290990", "GSM290991", "GSM291435", "GSM291439", "GSM291445", "GSM290901", "GSM290902", "GSM290903" ], "type": "time", "id": "GDS3725_6" }, { "dataset_id": "GDS3725", "description": "Day 5", "sample_id": [ "GSM291140", "GSM291141", "GSM291142", "GSM291555", "GSM296856", "GSM296857", "GSM291525", "GSM291538", "GSM291539", "GSM291540", "GSM291554", "GSM296858", "GSM296859", "GSM296860", "GSM296861" ], "type": "time", "id": "GDS3725_7" }, { "dataset_id": "GDS3725", "description": "Day 14", "sample_id": [ "GSM291000", "GSM291001", "GSM290992", "GSM290993", "GSM290995", "GSM290996", "GSM290997", "GSM290998", "GSM290999", "GSM291002", "GSM291003", "GSM292045", "GSM290994" ], "type": "time", "id": "GDS3725_8" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS3725", "version": 1.0, "instances": "43", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3725.tab", "compression": "gz" } ], [ [ "GDS3726.tab" ], { "title": "Oxidative stress-vulnerable and -resistant neurons", "description": "Analysis of neurons from 4 brain regions: hippocampal CA1 and CA3, cerebellar CbG, and cerebral cortex. CA1 and CbG neurons are vulnerable to oxidative stress (OS), CA3 and cerebral cortex neurons resistant. Results provide insight into the molecular basis for selective neuronal vulnerability to OS.", "type": "Expression profiling by array", "pubmed_id": "19228403", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7139", "order": "none", "update_date": "Aug 04 2010", "subsets": [ { "dataset_id": "GDS3726", "description": "cerebellar granular layer", "sample_id": [ "GSM172046", "GSM172047", "GSM172048" ], "type": "tissue", "id": "GDS3726_1" }, { "dataset_id": "GDS3726", "description": "cerebral cortex", "sample_id": [ "GSM172049", "GSM172050", "GSM172051" ], "type": "tissue", "id": "GDS3726_2" }, { "dataset_id": "GDS3726", "description": "hippocampal CA1", "sample_id": [ "GSM172040", "GSM172041", "GSM172042" ], "type": "tissue", "id": "GDS3726_3" }, { "dataset_id": "GDS3726", "description": "hippocampal CA3", "sample_id": [ "GSM172043", "GSM172044", "GSM172045" ], "type": "tissue", "id": "GDS3726_4" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3726", "version": 1.0, "instances": "12", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3726.tab", "compression": "gz" } ], [ [ "GDS3727.tab" ], { "title": "Endogenous miRNA transfection effect on cultured fibroblasts", "description": "Analysis of AG01522 fibroblasts transfected with the small RNA fraction from an identical culture, essentially doubling cellular miRNA content to enhance downregulation of the normally targeted transcripts. Results provide insight into the scope of miRNA regulation in a particular cellular context.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE20755", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3727", "description": "miRNA transfection", "sample_id": [ "GSM520723", "GSM520724", "GSM520725", "GSM520726", "GSM520727" ], "type": "protocol", "id": "GDS3727_1" }, { "dataset_id": "GDS3727", "description": "control", "sample_id": [ "GSM520728", "GSM520729", "GSM520730", "GSM520731", "GSM520732" ], "type": "protocol", "id": "GDS3727_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS3727", "version": 1.0, "instances": "10", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3727.tab", "compression": "gz" } ], [ [ "GDS3728.tab" ], { "title": "X chromosome dosage model", "description": "Analysis of four somatic tissues (brain, liver, kidney and muscle) from 12-week-old 40,XX and X monosomic (39,XO) mice. In humans, complete or partial monosomy of the X chromosome results in Turner syndrome (45,XO). Genes deregulated in XO mice provide insight into the molecular basis of TS.", "type": "Expression profiling by array", "pubmed_id": "20122165", "platform": "GPL6105", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46632", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE13520", "order": "none", "update_date": "Aug 04 2010", "subsets": [ { "dataset_id": "GDS3728", "description": "muscle", "sample_id": [ "GSM340923", "GSM340924", "GSM340925", "GSM340926", "GSM340927", "GSM340928", "GSM340929", "GSM340930", "GSM340931" ], "type": "tissue", "id": "GDS3728_1" }, { "dataset_id": "GDS3728", "description": "liver", "sample_id": [ "GSM340905", "GSM340906", "GSM340907", "GSM340908", "GSM340909", "GSM340910", "GSM340911", "GSM340912", "GSM340913" ], "type": "tissue", "id": "GDS3728_2" }, { "dataset_id": "GDS3728", "description": "kidney", "sample_id": [ "GSM340914", "GSM340915", "GSM340916", "GSM340917", "GSM340918", "GSM340919", "GSM340920", "GSM340921", "GSM340922" ], "type": "tissue", "id": "GDS3728_3" }, { "dataset_id": "GDS3728", "description": "brain", "sample_id": [ "GSM340932", "GSM340933", "GSM340934", "GSM340935", "GSM340936", "GSM340937", "GSM340938", "GSM340939", "GSM340940" ], "type": "tissue", "id": "GDS3728_4" }, { "dataset_id": "GDS3728", "description": "40,XX", "sample_id": [ "GSM340932", "GSM340914", "GSM340905", "GSM340923", "GSM340933", "GSM340915", "GSM340906", "GSM340924", "GSM340934", "GSM340916", "GSM340907", "GSM340925" ], "type": "genotype/variation", "id": "GDS3728_5" }, { "dataset_id": "GDS3728", "description": "39,XmO", "sample_id": [ "GSM340938", "GSM340920", "GSM340911", "GSM340929", "GSM340939", "GSM340921", "GSM340912", "GSM340930", "GSM340940", "GSM340922", "GSM340913", "GSM340931" ], "type": "genotype/variation", "id": "GDS3728_6" }, { "dataset_id": "GDS3728", "description": "39,XpO", "sample_id": [ "GSM340935", "GSM340917", "GSM340908", "GSM340926", "GSM340936", "GSM340918", "GSM340909", "GSM340927", "GSM340937", "GSM340919", "GSM340910", "GSM340928" ], "type": "genotype/variation", "id": "GDS3728_7" } ], "taxid": "10090", "genes": 33575, "aggregation_function": "mean", "name": "GDS3728", "version": 1.0, "instances": "36", "variables": 33578, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3728.tab", "compression": "gz" } ], [ [ "GDS3729.tab" ], { "title": "Embryonic stem cell cardiopoiesis", "description": "Analysis of CGR8 embryonic stem (ES) cells undergoing guided cardiogenic differentiation. Cell types examined include: undifferentiated ES plus leukemia inhibitory factor (LIF), ES-LIF(-), cardiopoietic cells, and cardiomyocytes. Results provide insight into the molecular basis of cardiogenesis.", "type": "Expression profiling by array", "pubmed_id": "18184438", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6689", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3729", "description": "control", "sample_id": [ "GSM522304", "GSM238849", "GSM154465" ], "type": "time", "id": "GDS3729_1" }, { "dataset_id": "GDS3729", "description": "timepoint 1", "sample_id": [ "GSM522305", "GSM238850", "GSM154466" ], "type": "time", "id": "GDS3729_2" }, { "dataset_id": "GDS3729", "description": "timepoint 1b", "sample_id": [ "GSM522308", "GSM522307", "GSM238853" ], "type": "time", "id": "GDS3729_3" }, { "dataset_id": "GDS3729", "description": "timepoint 2", "sample_id": [ "GSM522306", "GSM238852", "GSM154467" ], "type": "time", "id": "GDS3729_4" }, { "dataset_id": "GDS3729", "description": "ES-LIF(+), stem cells w/ LIF", "sample_id": [ "GSM522304", "GSM238849", "GSM154465" ], "type": "cell type", "id": "GDS3729_5" }, { "dataset_id": "GDS3729", "description": "ES-LIF(-), stem cells w/o LIF", "sample_id": [ "GSM522305", "GSM238850", "GSM154466" ], "type": "cell type", "id": "GDS3729_6" }, { "dataset_id": "GDS3729", "description": "cardiopoietic cell (CP)", "sample_id": [ "GSM522308", "GSM522307", "GSM238853" ], "type": "cell type", "id": "GDS3729_7" }, { "dataset_id": "GDS3729", "description": "cardiomyocyte (CM)", "sample_id": [ "GSM522306", "GSM238852", "GSM154467" ], "type": "cell type", "id": "GDS3729_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3729", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3729.tab", "compression": "gz" } ], [ [ "GDS3730.tab" ], { "title": "Transactive response DNA-binding protein (TDP-43) knockdown effect on embryonic kidney cells", "description": "Analysis of HEK293E cells depleted of transactive response DNA-binding protein (TDP-43). Inclusions of TDP-43 are hallmarks of frontotemporal dementia and amyotrophic lateral sclerosis (ALS). Results provide insight into the molecular basis of TDP-43 misfunction in neurodegenerative diseases.", "type": "Expression profiling by array", "pubmed_id": "19910924", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE18632", "order": "none", "update_date": "Dec 29 2010", "subsets": [ { "dataset_id": "GDS3730", "description": "control", "sample_id": [ "GSM463018", "GSM463017", "GSM463016", "GSM463015" ], "type": "genotype/variation", "id": "GDS3730_1" }, { "dataset_id": "GDS3730", "description": "TDP-43 knockdown", "sample_id": [ "GSM463022", "GSM463021", "GSM463020", "GSM463019" ], "type": "genotype/variation", "id": "GDS3730_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3730", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3730.tab", "compression": "gz" } ], [ [ "GDS3732.tab" ], { "title": "Transcription factor SRF deletion effect on hematopoietic stem cells", "description": "Analysis of hematopoietic LSK (Lin-Sca1+c-Kit+) cells invalidated for the serum response factor (SRF) gene. SRF regulates genes controlling cytoskeleton structures involved in cell spreading, adhesion and migration. Results provide insight into the role of SRF in hematopoietic stem cell homeostasis.", "type": "Expression profiling by array", "pubmed_id": "20709909", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE23556", "order": "none", "update_date": "Aug 23 2010", "subsets": [ { "dataset_id": "GDS3732", "description": "SRF wildtype", "sample_id": [ "GSM577851", "GSM577852", "GSM577853" ], "type": "genotype/variation", "id": "GDS3732_1" }, { "dataset_id": "GDS3732", "description": "SRF knockout mutant", "sample_id": [ "GSM577854", "GSM577855", "GSM577856" ], "type": "genotype/variation", "id": "GDS3732_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3732", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3732.tab", "compression": "gz" } ], [ [ "GDS3733.tab" ], { "title": "Growth plate chondrocytes", "description": "Analysis of growth plate chondrocytes, representing reserve and hypertrophic zones (RZ and HZ, respectively), isolated from metacarpals of prepubertal males. RZ cells terminally differentiate into non-dividing HZ cells. Results provide insight into the molecular basis of chondrocyte development.", "type": "Expression profiling by array", "pubmed_id": "19897599", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE18738", "order": "none", "update_date": "Sep 22 2010", "subsets": [ { "dataset_id": "GDS3733", "description": "growth plate chondrocytes, hypertrophic zone", "sample_id": [ "GSM465414", "GSM465416", "GSM465418", "GSM465420", "GSM465422", "GSM465424" ], "type": "cell type", "id": "GDS3733_1" }, { "dataset_id": "GDS3733", "description": "growth plate chondrocytes, reserve zone", "sample_id": [ "GSM465415", "GSM465417", "GSM465419", "GSM465421", "GSM465423", "GSM465425" ], "type": "cell type", "id": "GDS3733_2" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS3733", "version": 1.0, "instances": "12", "variables": 19375, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3733.tab", "compression": "gz" } ], [ [ "GDS3735.tab" ], { "title": "Hand2 loss of function effect on embryonic heart", "description": "Analysis of Hand2 mutant embryo hearts at 19 hpf. Hand2 is a myocardial transcription factor essential for fusion of bilateral cardiomyocyte populations moving toward the embryonic midline. Results provide insight into downstream components of the Hand2 pathway that mediates cardiac morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "20724450", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE23381", "order": "none", "update_date": "Sep 27 2010", "subsets": [ { "dataset_id": "GDS3735", "description": "hand2 mutant", "sample_id": [ "GSM573574", "GSM573576", "GSM573578" ], "type": "genotype/variation", "id": "GDS3735_1" }, { "dataset_id": "GDS3735", "description": "wild type", "sample_id": [ "GSM573573", "GSM573575", "GSM573577" ], "type": "genotype/variation", "id": "GDS3735_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS3735", "version": 1.0, "instances": "6", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3735.tab", "compression": "gz" } ], [ [ "GDS3736.tab" ], { "title": "Reversible pressure overload of left ventricle model", "description": "Analysis of left ventricle from C57BL/6 subjected to banding and debanding of the ascending aorta to mimic aortic stenosis (AS) and subsequent aortic valve replacement (AVR) in humans. Results provide insight into molecular mechanisms underlying the early phase of AVR-induced reverse remodeling.", "type": "Expression profiling by array", "pubmed_id": "20525982", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE24454", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS3736", "description": "aortic banding", "sample_id": [ "GSM602551", "GSM602552", "GSM602553" ], "type": "stress", "id": "GDS3736_1" }, { "dataset_id": "GDS3736", "description": "aortic banding and subsequent debanding", "sample_id": [ "GSM602545", "GSM602548", "GSM602549" ], "type": "stress", "id": "GDS3736_2" }, { "dataset_id": "GDS3736", "description": "sham procedure", "sample_id": [ "GSM602554", "GSM602555", "GSM602556" ], "type": "stress", "id": "GDS3736_3" }, { "dataset_id": "GDS3736", "description": "sham procedure and subsequent debanding", "sample_id": [ "GSM602546", "GSM602547", "GSM602550" ], "type": "stress", "id": "GDS3736_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3736", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3736.tab", "compression": "gz" } ], [ [ "GDS374.tab" ], { "title": "RNA quantity effect", "description": "Analysis of the effect of varying starting quantity of RNA. Three different amounts, 20 ug, 40 ug and 80 ug total Kc167 RNA used in homotypic labelings to determine optimal quantity of RNA.", "type": "Expression profiling by array", "pubmed_id": "14608405", "platform": "GPL311", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16896", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE417", "order": "none", "update_date": "Jul 10 2003", "subsets": [ { "dataset_id": "GDS374", "description": "20 ug RNA", "sample_id": [ "GSM6155" ], "type": "protocol", "id": "GDS374_1" }, { "dataset_id": "GDS374", "description": "40 ug RNA", "sample_id": [ "GSM6157" ], "type": "protocol", "id": "GDS374_2" }, { "dataset_id": "GDS374", "description": "80 ug RNA", "sample_id": [ "GSM6158" ], "type": "protocol", "id": "GDS374_3" } ], "taxid": "7227", "genes": 6885, "aggregation_function": "mean", "name": "GDS374", "version": 1.0, "instances": "3", "variables": 6887, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS374.tab", "compression": "gz" } ], [ [ "GDS3746.tab" ], { "title": "Cigarette smoke effect on tracheal explants", "description": "Analysis of tracheal explants at 2hrs and 24hrs following brief exposure to whole smoke. Some of the explants were pretreated with dexamethasone prior to smoke exposure. Results provide insight into the molecular mechanisms underlying pathogenesis of cigarette smoke-induced small airway remodeling.", "type": "Expression profiling by array", "pubmed_id": "19883206", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "count", "reference_series": "GSE15563", "order": "none", "update_date": "May 29 2015", "subsets": [ { "dataset_id": "GDS3746", "description": "control", "sample_id": [ "GSM389530", "GSM389531", "GSM389532", "GSM389533", "GSM389534", "GSM389535", "GSM389536", "GSM389537", "GSM389538", "GSM389539", "GSM389540", "GSM389541" ], "type": "stress", "id": "GDS3746_1" }, { "dataset_id": "GDS3746", "description": "dexamethasone", "sample_id": [ "GSM389554", "GSM389555", "GSM389556", "GSM389557", "GSM389558", "GSM389559", "GSM389560", "GSM389561", "GSM389562", "GSM389563", "GSM389564", "GSM389565" ], "type": "stress", "id": "GDS3746_2" }, { "dataset_id": "GDS3746", "description": "smoke", "sample_id": [ "GSM389566", "GSM389567", "GSM389568", "GSM389569", "GSM389570", "GSM389571", "GSM389572", "GSM389573", "GSM389574", "GSM389575", "GSM389576" ], "type": "stress", "id": "GDS3746_3" }, { "dataset_id": "GDS3746", "description": "dexamethasone + smoke", "sample_id": [ "GSM389542", "GSM389543", "GSM389544", "GSM389545", "GSM389546", "GSM389547", "GSM389548", "GSM389549", "GSM389550", "GSM389551", "GSM389552", "GSM389553" ], "type": "stress", "id": "GDS3746_4" }, { "dataset_id": "GDS3746", "description": "2 hrs", "sample_id": [ "GSM389536", "GSM389537", "GSM389538", "GSM389539", "GSM389540", "GSM389541", "GSM389548", "GSM389549", "GSM389550", "GSM389551", "GSM389552", "GSM389553", "GSM389560", "GSM389561", "GSM389562", "GSM389563", "GSM389564", "GSM389565", "GSM389571", "GSM389572", "GSM389573", "GSM389574", "GSM389575", "GSM389576" ], "type": "time", "id": "GDS3746_5" }, { "dataset_id": "GDS3746", "description": "24 hrs", "sample_id": [ "GSM389530", "GSM389531", "GSM389532", "GSM389533", "GSM389534", "GSM389535", "GSM389542", "GSM389543", "GSM389544", "GSM389545", "GSM389546", "GSM389547", "GSM389554", "GSM389555", "GSM389556", "GSM389557", "GSM389558", "GSM389559", "GSM389566", "GSM389567", "GSM389568", "GSM389569", "GSM389570" ], "type": "time", "id": "GDS3746_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3746", "version": 1.0, "instances": "47", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3746.tab", "compression": "gz" } ], [ [ "GDS3747.tab" ], { "title": "Transcription factor ETS-4 deletion effect on larvae", "description": "Analysis of stage L4 larvae with two distinct deletion alleles of ets-4: ets-4(ok165) and ets-4(uz1). Adults with ets-4 mutations have a significant extension of mean life span. Results provide insight into the transcriptional control of aging effectors by the ETS-4 transcription factor.", "type": "Expression profiling by array", "pubmed_id": "20862312", "platform": "GPL7272", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "20416", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log2 ratio", "reference_series": "GSE21851", "order": "none", "update_date": "Oct 12 2010", "subsets": [ { "dataset_id": "GDS3747", "description": "ets-4(ok165) mutant", "sample_id": [ "GSM543590", "GSM543592", "GSM543594" ], "type": "genotype/variation", "id": "GDS3747_1" }, { "dataset_id": "GDS3747", "description": "ets-4(uz1) mutant", "sample_id": [ "GSM543591", "GSM543593", "GSM543595" ], "type": "genotype/variation", "id": "GDS3747_2" } ], "taxid": "6239", "genes": 20128, "aggregation_function": "mean", "name": "GDS3747", "version": 1.0, "instances": "6", "variables": 20130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3747.tab", "compression": "gz" } ], [ [ "GDS3748.tab" ], { "title": "Peroxisome proliferator-activated receptor alpha deficiency effect on phthalate-exposed liver", "description": "Analysis of livers from peroxisome proliferator-activated receptor (PPAR) \u03b1-null animals exposed to the plasticizer di-(2-ethylhexyl) phthalate (DEHP). DEHP increases liver tumors in the absence of PPAR\u03b1. Results provide insight into DEHP-induced transcriptional changes independent of PPAR\u03b1.", "type": "Expression profiling by array", "pubmed_id": "19850644", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE18564", "order": "none", "update_date": "Oct 14 2010", "subsets": [ { "dataset_id": "GDS3748", "description": "wild type", "sample_id": [ "GSM461976", "GSM461977", "GSM461978", "GSM461979", "GSM461980", "GSM461981", "GSM461982", "GSM461983" ], "type": "genotype/variation", "id": "GDS3748_1" }, { "dataset_id": "GDS3748", "description": "PPAR knockout", "sample_id": [ "GSM461984", "GSM461985", "GSM461986", "GSM461987", "GSM461988", "GSM461989", "GSM461990" ], "type": "genotype/variation", "id": "GDS3748_2" }, { "dataset_id": "GDS3748", "description": "DEHP", "sample_id": [ "GSM461983", "GSM461982", "GSM461981", "GSM461980", "GSM461990", "GSM461989", "GSM461988" ], "type": "agent", "id": "GDS3748_3" }, { "dataset_id": "GDS3748", "description": "control", "sample_id": [ "GSM461976", "GSM461977", "GSM461978", "GSM461979", "GSM461987", "GSM461986", "GSM461985", "GSM461984" ], "type": "agent", "id": "GDS3748_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3748", "version": 1.0, "instances": "15", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3748.tab", "compression": "gz" } ], [ [ "GDS3749.tab" ], { "title": "Intratracheal lipopolysaccharide (IT LPS)-induced lung injury effect on Rag-1 null, lymphocyte-deficient mutants", "description": "Temporal analysis of lungs from recombinase-activating gene-1-deficient (Rag-1 -/-), lymphocyte-deficient animals following acute lung injury. Resolution of acute lung injury is impaired in Rag-1 null mutants. Results provide insight into molecular mechanisms underlying resolution of lung injury.", "type": "Expression profiling by array", "pubmed_id": "20028937", "platform": "GPL4865", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24048", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE17355", "order": "none", "update_date": "Oct 19 2010", "subsets": [ { "dataset_id": "GDS3749", "description": "Rag-1 null mutant", "sample_id": [ "GSM433840", "GSM433839", "GSM433838", "GSM433837", "GSM433836", "GSM433835", "GSM433834", "GSM433833", "GSM433832", "GSM433831", "GSM433830", "GSM433829" ], "type": "genotype/variation", "id": "GDS3749_1" }, { "dataset_id": "GDS3749", "description": "wild type", "sample_id": [ "GSM433828", "GSM433827", "GSM433826", "GSM433825", "GSM433824", "GSM433823", "GSM433822", "GSM433821", "GSM433820", "GSM433819", "GSM433818", "GSM433817" ], "type": "genotype/variation", "id": "GDS3749_2" }, { "dataset_id": "GDS3749", "description": "control", "sample_id": [ "GSM433829", "GSM433830", "GSM433831", "GSM433817", "GSM433818", "GSM433819" ], "type": "agent", "id": "GDS3749_3" }, { "dataset_id": "GDS3749", "description": "LPS", "sample_id": [ "GSM433838", "GSM433839", "GSM433840", "GSM433826", "GSM433827", "GSM433828", "GSM433832", "GSM433833", "GSM433834", "GSM433820", "GSM433821", "GSM433822", "GSM433835", "GSM433836", "GSM433837", "GSM433823", "GSM433824", "GSM433825" ], "type": "agent", "id": "GDS3749_4" }, { "dataset_id": "GDS3749", "description": "n/a", "sample_id": [ "GSM433829", "GSM433830", "GSM433831", "GSM433817", "GSM433818", "GSM433819" ], "type": "time", "id": "GDS3749_5" }, { "dataset_id": "GDS3749", "description": "1 day", "sample_id": [ "GSM433832", "GSM433833", "GSM433834", "GSM433820", "GSM433821", "GSM433822" ], "type": "time", "id": "GDS3749_6" }, { "dataset_id": "GDS3749", "description": "4 days", "sample_id": [ "GSM433835", "GSM433836", "GSM433837", "GSM433823", "GSM433824", "GSM433825" ], "type": "time", "id": "GDS3749_7" }, { "dataset_id": "GDS3749", "description": "10 days", "sample_id": [ "GSM433838", "GSM433839", "GSM433840", "GSM433826", "GSM433827", "GSM433828" ], "type": "time", "id": "GDS3749_8" } ], "taxid": "10090", "genes": 18829, "aggregation_function": "mean", "name": "GDS3749", "version": 1.0, "instances": "24", "variables": 18833, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3749.tab", "compression": "gz" } ], [ [ "GDS3750.tab" ], { "title": "Peroxiredoxin-like peroxidase DJ-1 knockdown effect on neuroblastoma cell line", "description": "Analysis of SH-SY5Y neuroblastoma cells depleted of DJ-1, an atypical peroxiredoxin-like peroxidase. Mutations in the gene encoding DJ-1 cause autosomal recessive early-onset Parkinson disease (AREP). Results provide insight into the molecular mechanisms underlying DJ-1-mediated PD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20395301", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE17204", "order": "none", "update_date": "Oct 20 2010", "subsets": [ { "dataset_id": "GDS3750", "description": "DJ-1 knockdown", "sample_id": [ "GSM430339", "GSM430340", "GSM430341", "GSM430342" ], "type": "genotype/variation", "id": "GDS3750_1" }, { "dataset_id": "GDS3750", "description": "control", "sample_id": [ "GSM430343", "GSM430344", "GSM430345", "GSM430346" ], "type": "genotype/variation", "id": "GDS3750_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3750", "version": 1.0, "instances": "8", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3750.tab", "compression": "gz" } ], [ [ "GDS3751.tab" ], { "title": "Clioquinol effect on yeast", "description": "Analysis of wildtype BY4742 yeast cultures treated with clioquinol (CQ), a hydrophobic chelator of copper, zinc, and iron in vitro. CQ signi\ufb01cantly decreased amyloid-beta levels in a mouse model of Alzheimer's disease (AD). Results provide insight into molecular mechanisms underlying CQ action.", "type": "Expression profiling by array", "pubmed_id": "21504115", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE17257", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3751", "description": "control", "sample_id": [ "GSM432203", "GSM432204", "GSM432205" ], "type": "agent", "id": "GDS3751_1" }, { "dataset_id": "GDS3751", "description": "clioquinol", "sample_id": [ "GSM432206", "GSM432207", "GSM432208" ], "type": "agent", "id": "GDS3751_2" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS3751", "version": 1.0, "instances": "6", "variables": 10625, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3751.tab", "compression": "gz" } ], [ [ "GDS3752.tab" ], { "title": "Concanavalin A-induced fulminant hepatitis model", "description": "Temporal analysis of liver from Balb/C males injected with concanavalin A (ConA) to induce fulminant hepatitis. ConA-induced hepatitis closely resembles human fulminant hepatitis. Results provide insight into the molecular mechanisms underlying the early stages of fulminant hepatitis.", "type": "Expression profiling by array", "pubmed_id": "20398290", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE17184", "order": "none", "update_date": "Oct 22 2010", "subsets": [ { "dataset_id": "GDS3752", "description": "untreated", "sample_id": [ "GSM429426", "GSM429428", "GSM429430" ], "type": "agent", "id": "GDS3752_1" }, { "dataset_id": "GDS3752", "description": "concanavalin A", "sample_id": [ "GSM429856", "GSM429857", "GSM429858", "GSM429859", "GSM429860", "GSM429861", "GSM429862", "GSM429863", "GSM429864" ], "type": "agent", "id": "GDS3752_2" }, { "dataset_id": "GDS3752", "description": "0 hr", "sample_id": [ "GSM429426", "GSM429428", "GSM429430" ], "type": "time", "id": "GDS3752_3" }, { "dataset_id": "GDS3752", "description": "1 hr", "sample_id": [ "GSM429858", "GSM429857", "GSM429856" ], "type": "time", "id": "GDS3752_4" }, { "dataset_id": "GDS3752", "description": "3 hr", "sample_id": [ "GSM429860", "GSM429862", "GSM429859" ], "type": "time", "id": "GDS3752_5" }, { "dataset_id": "GDS3752", "description": "6 hr", "sample_id": [ "GSM429864", "GSM429863", "GSM429861" ], "type": "time", "id": "GDS3752_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3752", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3752.tab", "compression": "gz" } ], [ [ "GDS3753.tab" ], { "title": "Skin-derived precursors", "description": "Analysis of primary passage neonatal skin-derived precursors (SKP) and Sox2-positive hair follicle dermal cells from which SKPs derive. SKPs and Sox2+ dermal precursors share similar function and transcriptional profile. Results provide insight into potential role of SKPs as adult dermal stem cells.", "type": "Expression profiling by array", "pubmed_id": "19951689", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE18690", "order": "none", "update_date": "Jun 21 2012", "subsets": [ { "dataset_id": "GDS3753", "description": "SKP", "sample_id": [ "GSM464261", "GSM464262", "GSM464263", "GSM464264" ], "type": "cell type", "id": "GDS3753_1" }, { "dataset_id": "GDS3753", "description": "Sox2-positive follicle dermal cells", "sample_id": [ "GSM464265", "GSM464266", "GSM464267", "GSM464268", "GSM464269" ], "type": "cell type", "id": "GDS3753_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3753", "version": 1.0, "instances": "9", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3753.tab", "compression": "gz" } ], [ [ "GDS3754.tab" ], { "title": "A2780 epithelial ovarian cancer cell line with acquired platinum resistance", "description": "Analysis of a cisplatin-resistant, A2780 cell line derived from parental (drug-sensitive) A2780 cells after 5 rounds of drug selection. Resistance to platinum (Pt)-based drugs occurs in the large majority of initially responsive tumors. Results provide insight into molecular basis of Pt resistance.", "type": "Expression profiling by array", "pubmed_id": "19505326", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE15709", "order": "none", "update_date": "Nov 16 2010", "subsets": [ { "dataset_id": "GDS3754", "description": "cisplatin-sensitive", "sample_id": [ "GSM385721", "GSM385722", "GSM385723", "GSM385724", "GSM385725" ], "type": "cell line", "id": "GDS3754_1" }, { "dataset_id": "GDS3754", "description": "cisplatin-resistant", "sample_id": [ "GSM385726", "GSM385727", "GSM385728", "GSM385729", "GSM385730" ], "type": "cell line", "id": "GDS3754_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3754", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3754.tab", "compression": "gz" } ], [ [ "GDS3755.tab" ], { "title": "Receptor for AGE (RAGE) deletion effect on ApoE null mice: aorta", "description": "Analysis of aortas of nondiabetic and diabetic ApoE-null mice expressing or lacking the multiligand receptor for advanced glycation end products (RAGE). RAGE contributes to atherosclerosis in ApoE-null mice. Results provide insight into molecular mechanisms by which RAGE accelerates atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "20133903", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE15729", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS3755", "description": "diabetic", "sample_id": [ "GSM379380", "GSM385478", "GSM389764", "GSM389765", "GSM392018", "GSM392019", "GSM392020", "GSM392021" ], "type": "disease state", "id": "GDS3755_1" }, { "dataset_id": "GDS3755", "description": "non-diabetic", "sample_id": [ "GSM390127", "GSM390128", "GSM390129", "GSM390289", "GSM392146", "GSM392156", "GSM392158" ], "type": "disease state", "id": "GDS3755_2" }, { "dataset_id": "GDS3755", "description": "ApoE-null", "sample_id": [ "GSM379380", "GSM385478", "GSM389764", "GSM389765", "GSM390127", "GSM390128", "GSM390129", "GSM390289" ], "type": "genotype/variation", "id": "GDS3755_3" }, { "dataset_id": "GDS3755", "description": "ApoE-null, RAGE-null", "sample_id": [ "GSM392018", "GSM392019", "GSM392020", "GSM392021", "GSM392146", "GSM392156", "GSM392158" ], "type": "genotype/variation", "id": "GDS3755_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3755", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3755.tab", "compression": "gz" } ], [ [ "GDS3756.tab" ], { "title": "Preoperative radio-chemotherapy effect on rectal cancer", "description": "Analysis of normal and tumor tissue specimens from Norwegian patients with resectable adenocarcinoma of the rectum, before and after preoperative radio-chemotherapy (RCT). Results provide insight into the molecular mechanisms underlying tumor response to neoadjuvant RCT.", "type": "Expression profiling by array", "pubmed_id": "19969511", "platform": "GPL2986", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE15781", "order": "none", "update_date": "Nov 17 2010", "subsets": [ { "dataset_id": "GDS3756", "description": "rectal tumor", "sample_id": [ "GSM396309", "GSM396310", "GSM396311", "GSM396312", "GSM396313", "GSM396314", "GSM396315", "GSM396316", "GSM396317", "GSM396318", "GSM396319", "GSM396320", "GSM396321", "GSM396332", "GSM396333", "GSM396334", "GSM396335", "GSM396336", "GSM396337", "GSM396338", "GSM396339", "GSM396340" ], "type": "tissue", "id": "GDS3756_1" }, { "dataset_id": "GDS3756", "description": "normal rectal tissue", "sample_id": [ "GSM396322", "GSM396323", "GSM396324", "GSM396325", "GSM396326", "GSM396327", "GSM396328", "GSM396329", "GSM396330", "GSM396331", "GSM396341", "GSM396342", "GSM396343", "GSM396344", "GSM396345", "GSM396346", "GSM396347", "GSM396348", "GSM396349", "GSM396350" ], "type": "tissue", "id": "GDS3756_2" }, { "dataset_id": "GDS3756", "description": "radio-chemotherapy", "sample_id": [ "GSM396341", "GSM396350", "GSM396342", "GSM396343", "GSM396344", "GSM396345", "GSM396346", "GSM396347", "GSM396348", "GSM396349", "GSM396332", "GSM396333", "GSM396334", "GSM396335", "GSM396336", "GSM396337", "GSM396338", "GSM396339", "GSM396340" ], "type": "protocol", "id": "GDS3756_3" }, { "dataset_id": "GDS3756", "description": "control", "sample_id": [ "GSM396322", "GSM396331", "GSM396323", "GSM396324", "GSM396325", "GSM396326", "GSM396327", "GSM396328", "GSM396329", "GSM396330", "GSM396309", "GSM396318", "GSM396319", "GSM396320", "GSM396321", "GSM396310", "GSM396311", "GSM396312", "GSM396313", "GSM396314", "GSM396315", "GSM396316", "GSM396317" ], "type": "protocol", "id": "GDS3756_4" } ], "taxid": "9606", "genes": 30389, "aggregation_function": "mean", "name": "GDS3756", "version": 1.0, "instances": "42", "variables": 30392, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3756.tab", "compression": "gz" } ], [ [ "GDS3758.tab" ], { "title": "Osteoarthritic chondrocytes: monolayer and matrix cultures", "description": "Analysis of monolayer cultures and Hyaff-11 scaffold cultures of chondrocytes from 3 donors suffering from osteoarthritis (OA). Results provide insight into the differentiation process of OA chondrocytes and their possible use in matrix-associated autologous chondrocyte transplantation (ACT).", "type": "Expression profiling by array", "pubmed_id": "19723327", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE16464", "order": "none", "update_date": "Nov 17 2010", "subsets": [ { "dataset_id": "GDS3758", "description": "osteoarthritis", "sample_id": [ "GSM413849", "GSM413850", "GSM413851", "GSM413843", "GSM413844", "GSM413845" ], "type": "disease state", "id": "GDS3758_1" }, { "dataset_id": "GDS3758", "description": "normal", "sample_id": [ "GSM413846", "GSM413847", "GSM413848", "GSM413840", "GSM413841", "GSM413842" ], "type": "disease state", "id": "GDS3758_2" }, { "dataset_id": "GDS3758", "description": "matrix culture", "sample_id": [ "GSM413851", "GSM413849", "GSM413850", "GSM413846", "GSM413847", "GSM413848" ], "type": "growth protocol", "id": "GDS3758_3" }, { "dataset_id": "GDS3758", "description": "monolayer culture", "sample_id": [ "GSM413843", "GSM413844", "GSM413845", "GSM413840", "GSM413841", "GSM413842" ], "type": "growth protocol", "id": "GDS3758_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3758", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3758.tab", "compression": "gz" } ], [ [ "GDS3759.tab" ], { "title": "Onconase effect on mesothelioma cells in vitro", "description": "Analysis of malignant mesothelioma (MM) cell lines (M25, M29, and M49) exposed to Onconase for 24 hrs. Onconase, an RNA damaging therapeutic agent, induces apoptosis in MM cells. Results provide insight into the molecular mechanisms underlying Onconase action in MM.", "type": "Expression profiling by array", "pubmed_id": "20137089", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE17009", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3759", "description": "M25", "sample_id": [ "GSM425507", "GSM425510" ], "type": "cell line", "id": "GDS3759_1" }, { "dataset_id": "GDS3759", "description": "M29", "sample_id": [ "GSM425508", "GSM425511" ], "type": "cell line", "id": "GDS3759_2" }, { "dataset_id": "GDS3759", "description": "M49", "sample_id": [ "GSM425509", "GSM425512" ], "type": "cell line", "id": "GDS3759_3" }, { "dataset_id": "GDS3759", "description": "control", "sample_id": [ "GSM425507", "GSM425508", "GSM425509" ], "type": "agent", "id": "GDS3759_4" }, { "dataset_id": "GDS3759", "description": "onconase", "sample_id": [ "GSM425510", "GSM425511", "GSM425512" ], "type": "agent", "id": "GDS3759_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3759", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3759.tab", "compression": "gz" } ], [ [ "GDS3761.tab" ], { "title": "1,25 dihydroxyvitamin D effect on prostate epithelial cell line RWPE1: time course", "description": "Analysis of RWPE1 cells, an immortalized, non-tumorigenic prostate epithelial cell line, treated with 1,25(OH)2D (i.e., the active form of vitamin D), for up to 48 hrs. RWPE1 cells are growth arrested by 1,25(OH)2D. Results provide insight into the role of vitamin D in prostate cancer prevention.", "type": "Expression profiling by array", "pubmed_id": "20070897", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE15947", "order": "none", "update_date": "Dec 28 2010", "subsets": [ { "dataset_id": "GDS3761", "description": "vehicle", "sample_id": [ "GSM400059", "GSM400060", "GSM400061", "GSM400062", "GSM400067", "GSM400068", "GSM400069", "GSM400070", "GSM400051", "GSM400052", "GSM400053", "GSM400054" ], "type": "agent", "id": "GDS3761_1" }, { "dataset_id": "GDS3761", "description": "1,25(OH)2D", "sample_id": [ "GSM400063", "GSM400064", "GSM400065", "GSM400066", "GSM400071", "GSM400072", "GSM400073", "GSM400074", "GSM400055", "GSM400056", "GSM400057", "GSM400058" ], "type": "agent", "id": "GDS3761_2" }, { "dataset_id": "GDS3761", "description": "6 hrs", "sample_id": [ "GSM400051", "GSM400052", "GSM400053", "GSM400054", "GSM400055", "GSM400056", "GSM400057", "GSM400058" ], "type": "time", "id": "GDS3761_3" }, { "dataset_id": "GDS3761", "description": "24 hrs", "sample_id": [ "GSM400059", "GSM400060", "GSM400061", "GSM400062", "GSM400063", "GSM400064", "GSM400065", "GSM400066" ], "type": "time", "id": "GDS3761_4" }, { "dataset_id": "GDS3761", "description": "48 hrs", "sample_id": [ "GSM400067", "GSM400068", "GSM400069", "GSM400070", "GSM400071", "GSM400072", "GSM400073", "GSM400074" ], "type": "time", "id": "GDS3761_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3761", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3761.tab", "compression": "gz" } ], [ [ "GDS3762.tab" ], { "title": "Skeletal muscle response to unloading and subsequent reloading", "description": "Analysis of left vastus lateralis muscle biopsies from 7 sedentary men following unloading (48 hr) via unilateral lower limb suspensionand and subsequent reloading (24 hr). Results provide insight into molecular events underlying the earliest stages of skeletal muscle disuse and reambulation.", "type": "Expression profiling by array", "pubmed_id": "20798274", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE21496", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS3762", "description": "subject 1", "sample_id": [ "GSM537138", "GSM537140", "GSM537139" ], "type": "individual", "id": "GDS3762_1" }, { "dataset_id": "GDS3762", "description": "subject 2", "sample_id": [ "GSM537135", "GSM537136", "GSM537137" ], "type": "individual", "id": "GDS3762_2" }, { "dataset_id": "GDS3762", "description": "subject 3", "sample_id": [ "GSM537132", "GSM537133", "GSM537134" ], "type": "individual", "id": "GDS3762_3" }, { "dataset_id": "GDS3762", "description": "subject 4", "sample_id": [ "GSM537129", "GSM537130", "GSM537131" ], "type": "individual", "id": "GDS3762_4" }, { "dataset_id": "GDS3762", "description": "subject 5", "sample_id": [ "GSM537126", "GSM537127", "GSM537128" ], "type": "individual", "id": "GDS3762_5" }, { "dataset_id": "GDS3762", "description": "subject 6", "sample_id": [ "GSM537123", "GSM537124", "GSM537125" ], "type": "individual", "id": "GDS3762_6" }, { "dataset_id": "GDS3762", "description": "subject 7", "sample_id": [ "GSM537120", "GSM537121", "GSM537122" ], "type": "individual", "id": "GDS3762_7" }, { "dataset_id": "GDS3762", "description": "baseline control", "sample_id": [ "GSM537122", "GSM537125", "GSM537128", "GSM537131", "GSM537134", "GSM537137", "GSM537140" ], "type": "protocol", "id": "GDS3762_8" }, { "dataset_id": "GDS3762", "description": "unloading for 48h", "sample_id": [ "GSM537121", "GSM537124", "GSM537127", "GSM537130", "GSM537133", "GSM537136", "GSM537139" ], "type": "protocol", "id": "GDS3762_9" }, { "dataset_id": "GDS3762", "description": "reloading for 24h", "sample_id": [ "GSM537120", "GSM537123", "GSM537126", "GSM537129", "GSM537132", "GSM537135", "GSM537138" ], "type": "protocol", "id": "GDS3762_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3762", "version": 1.0, "instances": "21", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3762.tab", "compression": "gz" } ], [ [ "GDS3763.tab" ], { "title": "Electrical stimulation in vivo effect on neonatal ventricular cardiomyocytes in the presence of an inhibitor of contraction", "description": "Analysis of neonatal ventricular cardiomyocytes subjected to electrical stimulation in the presence of blebbistatin to inhibit contraction. Results provide insight into electrical pulse-induced changes in gene expression in neonatal ventricular cardiomyocytes independent of contraction.", "type": "Expression profiling by array", "pubmed_id": "20858713", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE15856", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3763", "description": "no pulsing", "sample_id": [ "GSM398196", "GSM398198", "GSM398201" ], "type": "protocol", "id": "GDS3763_1" }, { "dataset_id": "GDS3763", "description": "electric pulsing", "sample_id": [ "GSM398197", "GSM398199", "GSM398202", "GSM398204" ], "type": "protocol", "id": "GDS3763_2" }, { "dataset_id": "GDS3763", "description": "electric pulsing with blebbistatin", "sample_id": [ "GSM398200", "GSM398203", "GSM398205" ], "type": "protocol", "id": "GDS3763_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3763", "version": 1.0, "instances": "10", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3763.tab", "compression": "gz" } ], [ [ "GDS3764.tab" ], { "title": "Fetal epithelial intestine-stomach boundary formation: time course", "description": "Analysis of stomach, pylorus and duodenum from E14.5 and E16.5 embryos. In adults, distinct morphological differences separate stomach from intestinal epithelium. This discrete junction is established at E16.5. Results provide insight into the molecular basis of epithelial pyloric border formation.", "type": "Expression profiling by array", "pubmed_id": "19877272", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE15872", "order": "none", "update_date": "Jun 20 2012", "subsets": [ { "dataset_id": "GDS3764", "description": "stomach", "sample_id": [ "GSM398467", "GSM398466", "GSM398465", "GSM398458", "GSM398457", "GSM398456" ], "type": "tissue", "id": "GDS3764_1" }, { "dataset_id": "GDS3764", "description": "pylorus", "sample_id": [ "GSM398470", "GSM398469", "GSM398468", "GSM398461", "GSM398460", "GSM398459" ], "type": "tissue", "id": "GDS3764_2" }, { "dataset_id": "GDS3764", "description": "duodenum", "sample_id": [ "GSM398473", "GSM398472", "GSM398471", "GSM398464", "GSM398463", "GSM398462" ], "type": "tissue", "id": "GDS3764_3" }, { "dataset_id": "GDS3764", "description": "E14.5", "sample_id": [ "GSM398456", "GSM398457", "GSM398458", "GSM398459", "GSM398460", "GSM398461", "GSM398462", "GSM398463", "GSM398464" ], "type": "age", "id": "GDS3764_4" }, { "dataset_id": "GDS3764", "description": "E16.5", "sample_id": [ "GSM398465", "GSM398466", "GSM398467", "GSM398468", "GSM398469", "GSM398470", "GSM398471", "GSM398472", "GSM398473" ], "type": "age", "id": "GDS3764_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3764", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3764.tab", "compression": "gz" } ], [ [ "GDS3765.tab" ], { "title": "Histone H3K27 methyltransferase Ezh2 deletion effect on primary preadipocyte cultures", "description": "Analysis of preadipocytes deficient in Ezh2, the enzymatic subunit of H3K27 methyltransferase PRC2. Deletion of Ezh2 eliminates H3K27me3 on Wnt promoters leading to activation of Wnt/b-catenin signaling and inhibition of adipogenesis. Results provide insight into the role of PRC2 in adipogenesis.", "type": "Expression profiling by array", "pubmed_id": "20368440", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE20054", "order": "none", "update_date": "Dec 29 2010", "subsets": [ { "dataset_id": "GDS3765", "description": "control", "sample_id": [ "GSM501365", "GSM501366" ], "type": "genotype/variation", "id": "GDS3765_1" }, { "dataset_id": "GDS3765", "description": "Ezh2 knockout", "sample_id": [ "GSM501363", "GSM501364" ], "type": "genotype/variation", "id": "GDS3765_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3765", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3765.tab", "compression": "gz" } ], [ [ "GDS3766.tab" ], { "title": "Inhibitor of nuclear factor kappa B kinase beta-subunit overactivity effect on skin cells", "description": "Analysis of back skin from transgenic (Tg) animals with keratinocyte-specific IKKbeta overexpression. The Tg animals present an inflammatory skin phenotype with histological features characteristic of interface dermatitis. Results provide insight into the role of IKKbeta in skin physiopathology.", "type": "Expression profiling by array", "pubmed_id": "20200541", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE17511", "order": "none", "update_date": "Dec 29 2010", "subsets": [ { "dataset_id": "GDS3766", "description": "control", "sample_id": [ "GSM436516", "GSM436517" ], "type": "genotype/variation", "id": "GDS3766_1" }, { "dataset_id": "GDS3766", "description": "IKKbeta overexpression", "sample_id": [ "GSM436518", "GSM436519" ], "type": "genotype/variation", "id": "GDS3766_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3766", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3766.tab", "compression": "gz" } ], [ [ "GDS3767.tab" ], { "title": "Zinc finger transcription factor PLAGL2 effect on primary p53-null neural stem cells", "description": "Analysis of PlagL2-transduced, p53-null neural stem cells (NSCs) following differentiation induction. PLAGL2 strongly suppresses NSC differentiation while promoting self-renewal capacity. Results provide insight into the molecular basis of this differentiation-suppressive activity.", "type": "Expression profiling by array", "pubmed_id": "20478531", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21143", "order": "none", "update_date": "Dec 29 2010", "subsets": [ { "dataset_id": "GDS3767", "description": "control", "sample_id": [ "GSM529451", "GSM529449", "GSM529445" ], "type": "protocol", "id": "GDS3767_1" }, { "dataset_id": "GDS3767", "description": "PlagL2 transduction", "sample_id": [ "GSM529452", "GSM529450", "GSM529448" ], "type": "protocol", "id": "GDS3767_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3767", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3767.tab", "compression": "gz" } ], [ [ "GDS3768.tab" ], { "title": "Fat-Specific protein 27 knockout effect on white adipose tissue", "description": "Analysis of gonadal white adipose tissue (WAT) from Fat-Specific protein 27 (FSP27)-null males. FSP27-null WATs have reduced lipid storage, smaller lipid droplets, and increased mitochondrial activity. Results provide insight into molecular mechanisms by which FSP27 controls lipid storage in WAT.", "type": "Expression profiling by array", "pubmed_id": [ "20649970", "26484280" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE22693", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3768", "description": "wild type", "sample_id": [ "GSM562380", "GSM562382" ], "type": "genotype/variation", "id": "GDS3768_1" }, { "dataset_id": "GDS3768", "description": "FSP27 knockout", "sample_id": [ "GSM562379", "GSM562381" ], "type": "genotype/variation", "id": "GDS3768_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3768", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3768.tab", "compression": "gz" } ], [ [ "GDS3769.tab" ], { "title": "Asparaginyl Hydroxylase Factor inhibiting HIF-1\u03b1 (FIH) deficiency effect on immortalized embryonic fibroblasts", "description": "Analysis of FIH-null large T antigen-immortalized murine embryonic fibroblasts (MEFs) grown under normoxic conditions. von Hippel-Lindau tumor suppressor gene (VHL)-null and VHL/FIH-null mutants were also examined. Results provide insight into the role of FIH as an essential regulator of metabolism.", "type": "Expression profiling by array", "pubmed_id": "20399150", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE20335", "order": "none", "update_date": "Dec 29 2010", "subsets": [ { "dataset_id": "GDS3769", "description": "wild type", "sample_id": [ "GSM509574", "GSM509575" ], "type": "genotype/variation", "id": "GDS3769_1" }, { "dataset_id": "GDS3769", "description": "FIH null", "sample_id": [ "GSM509576", "GSM509577" ], "type": "genotype/variation", "id": "GDS3769_2" }, { "dataset_id": "GDS3769", "description": "VHL null", "sample_id": [ "GSM509578", "GSM509579" ], "type": "genotype/variation", "id": "GDS3769_3" }, { "dataset_id": "GDS3769", "description": "FIH/VHL null", "sample_id": [ "GSM509580", "GSM509581" ], "type": "genotype/variation", "id": "GDS3769_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3769", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3769.tab", "compression": "gz" } ], [ [ "GDS3770.tab" ], { "title": "Early-passage induced pluripotent stem (iPS) cells derived from various somatic cell populations", "description": "Analysis of iPSCs (at p4) derived from different cell types (fibroblasts, hematopoietic, myogenic cells) through ectopic expression of transcription factors Oct4, Sox2, Klf4, cMyc. Results provide insight into the influence of cellular origin on transcriptional patterns of derivative iPSCs.", "type": "Expression profiling by array", "pubmed_id": "20644536", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22908", "order": "none", "update_date": "Dec 31 2010", "subsets": [ { "dataset_id": "GDS3770", "description": "splenic B cell iPS", "sample_id": [ "GSM565756", "GSM565757", "GSM565758" ], "type": "cell type", "id": "GDS3770_1" }, { "dataset_id": "GDS3770", "description": "bone marrow granulocyte iPS", "sample_id": [ "GSM565753", "GSM565754", "GSM565755" ], "type": "cell type", "id": "GDS3770_2" }, { "dataset_id": "GDS3770", "description": "skeletal muscle precursor iPS", "sample_id": [ "GSM565762", "GSM565763", "GSM565764" ], "type": "cell type", "id": "GDS3770_3" }, { "dataset_id": "GDS3770", "description": "tail tip fibroblast iPS", "sample_id": [ "GSM565759", "GSM565760", "GSM565761" ], "type": "cell type", "id": "GDS3770_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3770", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3770.tab", "compression": "gz" } ], [ [ "GDS3771.tab" ], { "title": "Continuous passaging effect on induced pluripotent stem (iPS) cells derived from various somatic cell populations (I)", "description": "Analysis of iPSCs (at p10) derived from different cell types (fibroblasts, hematopoietic cells) through ectopic expression of transcription factors Oct4, Sox2, Klf4, cMyc. Results provide insight into the effect of passaging on iPSC functionality.", "type": "Expression profiling by array", "pubmed_id": "20644536", "platform": "GPL8759", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22716", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE22043", "order": "none", "update_date": "Jun 21 2012", "subsets": [ { "dataset_id": "GDS3771", "description": "splenic B cell iPS", "sample_id": [ "GSM547983", "GSM547984", "GSM547985", "GSM547977", "GSM547978", "GSM547979" ], "type": "cell type", "id": "GDS3771_1" }, { "dataset_id": "GDS3771", "description": "bone marrow granulocyte iPS", "sample_id": [ "GSM547974", "GSM547975", "GSM547976", "GSM547968", "GSM547969", "GSM547970", "GSM547947", "GSM547948", "GSM547949", "GSM547943", "GSM547942", "GSM547941" ], "type": "cell type", "id": "GDS3771_2" }, { "dataset_id": "GDS3771", "description": "skeletal muscle precursor iPS", "sample_id": [ "GSM547944", "GSM547945", "GSM547946" ], "type": "cell type", "id": "GDS3771_3" }, { "dataset_id": "GDS3771", "description": "T cell iPS", "sample_id": [ "GSM547965", "GSM547966", "GSM547967", "GSM547959", "GSM547960", "GSM547961" ], "type": "cell type", "id": "GDS3771_4" }, { "dataset_id": "GDS3771", "description": "tail tip fibroblast iPS", "sample_id": [ "GSM547956", "GSM547957", "GSM547958", "GSM547950", "GSM547951", "GSM547952" ], "type": "cell type", "id": "GDS3771_5" }, { "dataset_id": "GDS3771", "description": "cell passage 4", "sample_id": [ "GSM547952", "GSM547951", "GSM547950", "GSM547961", "GSM547960", "GSM547959", "GSM547943", "GSM547942", "GSM547941", "GSM547970", "GSM547969", "GSM547968", "GSM547979", "GSM547978", "GSM547977" ], "type": "growth protocol", "id": "GDS3771_6" }, { "dataset_id": "GDS3771", "description": "cell passage 6", "sample_id": [ "GSM547946", "GSM547945", "GSM547944" ], "type": "growth protocol", "id": "GDS3771_7" }, { "dataset_id": "GDS3771", "description": "cell passage 16", "sample_id": [ "GSM547958", "GSM547957", "GSM547956", "GSM547967", "GSM547966", "GSM547965", "GSM547949", "GSM547948", "GSM547947", "GSM547976", "GSM547975", "GSM547974", "GSM547985", "GSM547984", "GSM547983" ], "type": "growth protocol", "id": "GDS3771_8" } ], "taxid": "10090", "genes": 15695, "aggregation_function": "mean", "name": "GDS3771", "version": 1.0, "instances": "33", "variables": 15698, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3771.tab", "compression": "gz" } ], [ [ "GDS3772.tab" ], { "title": "Continuous passaging effect on induced pluripotent stem (iPS) cells derived from various somatic cell populations (II)", "description": "Analysis of iPSCs (from p4 to p16) derived from different cell types (fibroblasts, hematopoietic, myogenic cells) through ectopic expression of transcription factors Oct4, Sox2, Klf4, cMyc. Results provide insight into the effect of passaging on iPSC functionality.", "type": "Expression profiling by array", "pubmed_id": "20644536", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22043", "order": "none", "update_date": "Jun 21 2012", "subsets": [ { "dataset_id": "GDS3772", "description": "tail tip fibroblast iPS", "sample_id": [ "GSM547953", "GSM547954", "GSM547955" ], "type": "cell type", "id": "GDS3772_1" }, { "dataset_id": "GDS3772", "description": "T cell iPS", "sample_id": [ "GSM547962", "GSM547963", "GSM547964" ], "type": "cell type", "id": "GDS3772_2" }, { "dataset_id": "GDS3772", "description": "bone marrow granulocyte iPS", "sample_id": [ "GSM547971", "GSM547972", "GSM547973" ], "type": "cell type", "id": "GDS3772_3" }, { "dataset_id": "GDS3772", "description": "splenic B cell iPS", "sample_id": [ "GSM547980", "GSM547981", "GSM547982" ], "type": "cell type", "id": "GDS3772_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3772", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3772.tab", "compression": "gz" } ], [ [ "GDS3773.tab" ], { "title": "Interleukin 6 effect on liver", "description": "Analysis of livers from C57BL6 males treated with IL-6. Cytokines such as IL-6 activate STAT3 which plays a role in glucose homeostasis by negatively regulating hepatic gluconeogenic gene expression. Results provide insight into STAT3 targets involved in the development of metabolic syndrome.", "type": "Expression profiling by array", "pubmed_id": "20304921", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE21060", "order": "none", "update_date": "Feb 14 2011", "subsets": [ { "dataset_id": "GDS3773", "description": "control", "sample_id": [ "GSM526561", "GSM526562", "GSM526602" ], "type": "agent", "id": "GDS3773_1" }, { "dataset_id": "GDS3773", "description": "IL-6", "sample_id": [ "GSM526603", "GSM526605", "GSM526678" ], "type": "agent", "id": "GDS3773_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3773", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3773.tab", "compression": "gz" } ], [ [ "GDS3774.tab" ], { "title": "microRNA-124 guide strand segmentation effect on HCT-116 Dicer hypomorph cells", "description": "Analysis of HCT-116 dicer- cells transfected with miR-124 duplex containing a segmented guide strand. Following miRNA guide strand segmentation, seed-based (positions 2 through 8 at the 5' end of the guide strand) activity persisted. Results illustrate a structural flexibility in miRNA duplexes.", "type": "Expression profiling by array", "pubmed_id": "20971811", "platform": "GPL10379", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "52378", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE25224", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS3774", "description": "control", "sample_id": [ "GSM619260", "GSM620811" ], "type": "protocol", "id": "GDS3774_1" }, { "dataset_id": "GDS3774", "description": "miR-124 G/P intact guide strand transfection", "sample_id": [ "GSM620812" ], "type": "protocol", "id": "GDS3774_2" }, { "dataset_id": "GDS3774", "description": "miR-124 G10.12/P segmented guide strand transfection", "sample_id": [ "GSM620813" ], "type": "protocol", "id": "GDS3774_3" } ], "taxid": "9606", "genes": 36059, "aggregation_function": "mean", "name": "GDS3774", "version": 1.0, "instances": "4", "variables": 36061, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3774.tab", "compression": "gz" } ], [ [ "GDS3775.tab" ], { "title": "Zinc metalloproteinase Zmpste24 deficiency effect on embryonic fibroblasts in vitro", "description": "Analysis of cultured, early passage (P3) embryonic fibroblasts deficient in Zmpste24. ZMPSTE24-null mutants have a short lifespan and show some signs of accelerated ageing. Results provide insight into the role of Zmpste24 in the aging process.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE25257", "order": "none", "update_date": "Jun 22 2012", "subsets": [ { "dataset_id": "GDS3775", "description": "wild type", "sample_id": [ "GSM621319", "GSM621320", "GSM621321" ], "type": "genotype/variation", "id": "GDS3775_1" }, { "dataset_id": "GDS3775", "description": "Zmpste24 null mutant", "sample_id": [ "GSM621322", "GSM621323", "GSM621324" ], "type": "genotype/variation", "id": "GDS3775_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3775", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3775.tab", "compression": "gz" } ], [ [ "GDS3776.tab" ], { "title": "IKKbeta deletion effect on neutrophils", "description": "Analysis of Ly6G+ thioglycollate-elicited peritoneal neutrophils from animals with inducible deletion of IKKbeta. Ikkbeta-delta neutrophils had a longer lifespan than did wild-type counterparts. Results provide insight into the molecular basis of enhanced neutrophil lifespan in IKKbeta deficiency.", "type": "Expression profiling by array", "pubmed_id": "21170027", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE25211", "order": "none", "update_date": "Feb 15 2011", "subsets": [ { "dataset_id": "GDS3776", "description": "deleted Ikkbeta", "sample_id": [ "GSM619274", "GSM619275" ], "type": "genotype/variation", "id": "GDS3776_1" }, { "dataset_id": "GDS3776", "description": "floxed Ikkbeta", "sample_id": [ "GSM619276", "GSM619277" ], "type": "genotype/variation", "id": "GDS3776_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3776", "version": 1.0, "instances": "4", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3776.tab", "compression": "gz" } ], [ [ "GDS3777.tab" ], { "title": "BPH model of hypertension: adrenal gland", "description": "Analysis of adrenal glands from genetically/hereditary hypertensive (BPH/2) and genetically/hereditary low-blood pressure (BPL/1) 12-week old adults. Results provide insight into molecular mechanisms underlying the pathogenesis of genetic hypertension.", "type": "Expression profiling by array", "pubmed_id": "15166183", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE19342", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3777", "description": "hypotensive BPL", "sample_id": [ "GSM480408", "GSM480409", "GSM480410" ], "type": "strain", "id": "GDS3777_1" }, { "dataset_id": "GDS3777", "description": "hypertensive BPH", "sample_id": [ "GSM480411", "GSM480412", "GSM480413" ], "type": "strain", "id": "GDS3777_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3777", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3777.tab", "compression": "gz" } ], [ [ "GDS3779.tab" ], { "title": "Chromogranin A-null model of hypertension: adrenal gland", "description": "Analysis of adrenal glands from 12-week old, chromogranin A knockouts (Chga KO). The Chga KO displays severe hypertension coupled with reduction in size, number, and density of regulated secretory granules. Results provide insight into the molecular basis of this monogenic hypertension model.", "type": "Expression profiling by array", "pubmed_id": "19952279", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE18332", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3779", "description": "Chga knockout", "sample_id": [ "GSM457016", "GSM457017", "GSM457018" ], "type": "genotype/variation", "id": "GDS3779_1" }, { "dataset_id": "GDS3779", "description": "wild type", "sample_id": [ "GSM457019", "GSM457020", "GSM457021" ], "type": "genotype/variation", "id": "GDS3779_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS3779", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3779.tab", "compression": "gz" } ], [ [ "GDS378.tab" ], { "title": "Germination and gibberellin inhibitor", "description": "Analysis of effect of uniconazole-P, a gibberellin biosynthetic inhibitor, on wild type and pickle (pkl) germinating seeds. pkl mutants are defective in repressing embryonic differentiation characteristics. Gibberellins promote germination of seeds.", "type": "Expression profiling by array", "pubmed_id": "12834400", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE277", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS378", "description": "pickle mutant", "sample_id": [ "GSM3841", "GSM3842", "GSM3843", "GSM3844", "GSM3849", "GSM3850", "GSM3851", "GSM3856" ], "type": "strain", "id": "GDS378_1" }, { "dataset_id": "GDS378", "description": "wild type", "sample_id": [ "GSM3845", "GSM3846", "GSM3847", "GSM3848", "GSM3852", "GSM3853", "GSM3854", "GSM3855" ], "type": "strain", "id": "GDS378_2" }, { "dataset_id": "GDS378", "description": "no uniconazole-P", "sample_id": [ "GSM3841", "GSM3849", "GSM3850", "GSM3851", "GSM3852", "GSM3853", "GSM3854", "GSM3855" ], "type": "agent", "id": "GDS378_3" }, { "dataset_id": "GDS378", "description": "uniconazole-P", "sample_id": [ "GSM3842", "GSM3843", "GSM3844", "GSM3845", "GSM3846", "GSM3847", "GSM3848", "GSM3856" ], "type": "agent", "id": "GDS378_4" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS378", "version": 1.0, "instances": "16", "variables": 7548, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS378.tab", "compression": "gz" } ], [ [ "GDS3780.tab" ], { "title": "Chromogranin A-null model of hypertension: liver", "description": "Analysis of livers from 12-week old, chromogranin A knockouts (Chga KO). The Chga KO displays severe hypertension coupled with reduction in size, number, and density of regulated secretory granules. Results provide insight into the molecular basis of this monogenic hypertension model.", "type": "Expression profiling by array", "pubmed_id": "19952279", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE18332", "order": "none", "update_date": "Feb 15 2011", "subsets": [ { "dataset_id": "GDS3780", "description": "Chga knockout", "sample_id": [ "GSM457022", "GSM457023", "GSM457024" ], "type": "genotype/variation", "id": "GDS3780_1" }, { "dataset_id": "GDS3780", "description": "wild type", "sample_id": [ "GSM457025", "GSM457026", "GSM457027" ], "type": "genotype/variation", "id": "GDS3780_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3780", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3780.tab", "compression": "gz" } ], [ [ "GDS3781.tab" ], { "title": "Morbidly obese insulin-resistant patients: omental and subcutaneous adipose tissue", "description": "Analysis of subcutaneous and visceral adipose tissue from body mass index (BMI)-matched, obese patients who were insulin-sensitive versus insulin-resistant, thereby eliminating obesity as a variable. Results provide insight into molecular mechanisms mediating obesity-related insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "20678967", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "transformed count", "reference_series": "GSE20950", "order": "none", "update_date": "Feb 15 2011", "subsets": [ { "dataset_id": "GDS3781", "description": "female", "sample_id": [ "GSM523837", "GSM523839", "GSM523840", "GSM523841", "GSM523845", "GSM523846", "GSM523847", "GSM523848", "GSM523850", "GSM523851", "GSM523852", "GSM523854", "GSM523855", "GSM523856", "GSM523857", "GSM523859", "GSM523860", "GSM523861", "GSM523865", "GSM523866", "GSM523867", "GSM523868", "GSM523870", "GSM523871", "GSM523872", "GSM523874", "GSM523875" ], "type": "gender", "id": "GDS3781_1" }, { "dataset_id": "GDS3781", "description": "male", "sample_id": [ "GSM523838", "GSM523842", "GSM523843", "GSM523844", "GSM523849", "GSM523853", "GSM523858", "GSM523862", "GSM523863", "GSM523864", "GSM523869", "GSM523873" ], "type": "gender", "id": "GDS3781_2" }, { "dataset_id": "GDS3781", "description": "insulin sensitive", "sample_id": [ "GSM523849", "GSM523869", "GSM523848", "GSM523868", "GSM523847", "GSM523867", "GSM523846", "GSM523866", "GSM523855", "GSM523875", "GSM523854", "GSM523874", "GSM523853", "GSM523873", "GSM523852", "GSM523872", "GSM523851", "GSM523871", "GSM523850", "GSM523870" ], "type": "disease state", "id": "GDS3781_3" }, { "dataset_id": "GDS3781", "description": "insulin resistant", "sample_id": [ "GSM523839", "GSM523859", "GSM523838", "GSM523858", "GSM523837", "GSM523857", "GSM523856", "GSM523845", "GSM523865", "GSM523844", "GSM523864", "GSM523843", "GSM523863", "GSM523842", "GSM523862", "GSM523841", "GSM523861", "GSM523840", "GSM523860" ], "type": "disease state", "id": "GDS3781_4" }, { "dataset_id": "GDS3781", "description": "subcutaneous adipose tissue", "sample_id": [ "GSM523837", "GSM523838", "GSM523839", "GSM523840", "GSM523841", "GSM523842", "GSM523843", "GSM523844", "GSM523845", "GSM523846", "GSM523847", "GSM523848", "GSM523849", "GSM523850", "GSM523851", "GSM523852", "GSM523853", "GSM523854", "GSM523855" ], "type": "tissue", "id": "GDS3781_5" }, { "dataset_id": "GDS3781", "description": "omental adipose tissue", "sample_id": [ "GSM523856", "GSM523857", "GSM523858", "GSM523859", "GSM523860", "GSM523861", "GSM523862", "GSM523863", "GSM523864", "GSM523865", "GSM523866", "GSM523867", "GSM523868", "GSM523869", "GSM523870", "GSM523871", "GSM523872", "GSM523873", "GSM523874", "GSM523875" ], "type": "tissue", "id": "GDS3781_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3781", "version": 1.0, "instances": "39", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3781.tab", "compression": "gz" } ], [ [ "GDS3782.tab" ], { "title": "Type 2 diabetes: pancreatic beta-cells", "description": "Analysis of beta-cell enriched pancreatic tissue obtained by laser capture microdissection from subjects with type 2 diabetes (T2D). In subjects predisposed to T2D, beta-cell dysfunction occurs early in the course of the disease. Results provide further insight into the pathogenesis of T2D.", "type": "Expression profiling by array", "pubmed_id": "20644627", "platform": "GPL1352", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "61359", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE20966", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3782", "description": "non-diabetic control", "sample_id": [ "GSM524151", "GSM524152", "GSM524153", "GSM524154", "GSM524155", "GSM524156", "GSM524157", "GSM524158", "GSM524159", "GSM524160" ], "type": "disease state", "id": "GDS3782_1" }, { "dataset_id": "GDS3782", "description": "type 2 diabetes", "sample_id": [ "GSM524161", "GSM524162", "GSM524163", "GSM524164", "GSM524165", "GSM524166", "GSM524167", "GSM524168", "GSM524169", "GSM524170" ], "type": "disease state", "id": "GDS3782_2" } ], "taxid": "9606", "genes": 32392, "aggregation_function": "mean", "name": "GDS3782", "version": 1.0, "instances": "20", "variables": 32394, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3782.tab", "compression": "gz" } ], [ [ "GDS3783.tab" ], { "title": "Jurkat T cell response to silver nanoparticles", "description": "Analysis of Jurkat T cells exposed to to 0.2 mg/L of silver nanoparticles (AgNPs) and Ag ions for 24 hours. Cell viability screening revealed that Jurkat T cells exhibit higher sensitivity to AgNPs than to Ag ions. Results provide insight into the molecular basis of this difference in sensitivity.", "type": "Expression profiling by array", "pubmed_id": [ "20932003", "24974767" ], "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE20692", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS3783", "description": "control", "sample_id": [ "GSM519528", "GSM519529", "GSM519530" ], "type": "stress", "id": "GDS3783_1" }, { "dataset_id": "GDS3783", "description": "Ag nanoparticles", "sample_id": [ "GSM519531", "GSM519532", "GSM519533" ], "type": "stress", "id": "GDS3783_2" }, { "dataset_id": "GDS3783", "description": "Ag ions", "sample_id": [ "GSM519534", "GSM519535", "GSM519536" ], "type": "stress", "id": "GDS3783_3" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS3783", "version": 1.0, "instances": "9", "variables": 19337, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3783.tab", "compression": "gz" } ], [ [ "GDS3784.tab" ], { "title": "Left internal mammary artery response to implantation of paclitaxel-eluting and bare-metal stents", "description": "Analysis of left internal mammary artery (LIMA) fitted with either a drug-eluting stent (DES) or a bare-metal stent. DES use has led to a large reduction in restenosis rates compared with bare-metal stents. Results provide insight into molecular mechanisms underlying the different clinical outcomes.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE19136", "order": "none", "update_date": "Jun 20 2012", "subsets": [ { "dataset_id": "GDS3784", "description": "patient 1", "sample_id": [ "GSM474494", "GSM474493", "GSM474495" ], "type": "individual", "id": "GDS3784_1" }, { "dataset_id": "GDS3784", "description": "patient 2", "sample_id": [ "GSM474497", "GSM474496", "GSM474498" ], "type": "individual", "id": "GDS3784_2" }, { "dataset_id": "GDS3784", "description": "patient 4", "sample_id": [ "GSM474500", "GSM474499", "GSM474501" ], "type": "individual", "id": "GDS3784_3" }, { "dataset_id": "GDS3784", "description": "patient 5", "sample_id": [ "GSM474503", "GSM474502", "GSM474504" ], "type": "individual", "id": "GDS3784_4" }, { "dataset_id": "GDS3784", "description": "control", "sample_id": [ "GSM474493", "GSM474496", "GSM474499", "GSM474502" ], "type": "protocol", "id": "GDS3784_5" }, { "dataset_id": "GDS3784", "description": "bare-metal stent", "sample_id": [ "GSM474494", "GSM474497", "GSM474500", "GSM474503" ], "type": "protocol", "id": "GDS3784_6" }, { "dataset_id": "GDS3784", "description": "paclitaxel-eluting stent", "sample_id": [ "GSM474495", "GSM474498", "GSM474501", "GSM474504" ], "type": "protocol", "id": "GDS3784_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3784", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3784.tab", "compression": "gz" } ], [ [ "GDS3785.tab" ], { "title": "Osteoarthritic chondrocytes and healthy mesenchymal stem cell during chondrogenic differentiation: time course", "description": "Temporal analysis of chondrocytes from osteoarthritic knee joints and mesenchymal stem cells from bone marrow of healthy donors, grown in a pellet culture system under chondrogenic conditions. Results provide insight into molecular mechanisms underlying chondrogenic commitment of both cell types.", "type": "Expression profiling by array", "pubmed_id": "20883804", "platform": "GPL9828", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "17589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE19664", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3785", "description": "chondrocyte", "sample_id": [ "GSM490979", "GSM490980", "GSM490981", "GSM490982" ], "type": "cell type", "id": "GDS3785_1" }, { "dataset_id": "GDS3785", "description": "mesenchymal stem cell (MSC)", "sample_id": [ "GSM490983", "GSM490984", "GSM490985", "GSM490986" ], "type": "cell type", "id": "GDS3785_2" }, { "dataset_id": "GDS3785", "description": "0 d", "sample_id": [ "GSM490979", "GSM490983" ], "type": "time", "id": "GDS3785_3" }, { "dataset_id": "GDS3785", "description": "3 d", "sample_id": [ "GSM490980", "GSM490984" ], "type": "time", "id": "GDS3785_4" }, { "dataset_id": "GDS3785", "description": "7 d", "sample_id": [ "GSM490981", "GSM490985" ], "type": "time", "id": "GDS3785_5" }, { "dataset_id": "GDS3785", "description": "14 d", "sample_id": [ "GSM490982", "GSM490986" ], "type": "time", "id": "GDS3785_6" } ], "taxid": "9606", "genes": 17528, "aggregation_function": "mean", "name": "GDS3785", "version": 1.0, "instances": "8", "variables": 17531, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3785.tab", "compression": "gz" } ], [ [ "GDS3786.tab" ], { "title": "Snord116del mutant hypothalamus response to neonatal starvation", "description": "Analysis of P5 and P13 hypothalami from Snord116del animals, a model for Prader-Willi syndrome, a disease that involves infantile feeding difficulties and failure to thrive. P5 neonates subjected to 6h starvation. Results provide insight into the role of Snord116 in feeding regulation in neonates.", "type": "Expression profiling by array", "pubmed_id": "20195375", "platform": "GPL6103", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24613", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE14984", "order": "none", "update_date": "Jun 23 2012", "subsets": [ { "dataset_id": "GDS3786", "description": "postnatal day 5", "sample_id": [ "GSM374086", "GSM374087", "GSM374088", "GSM374089", "GSM374090", "GSM374091", "GSM374092", "GSM374093", "GSM374094", "GSM374095", "GSM374096", "GSM374097" ], "type": "age", "id": "GDS3786_1" }, { "dataset_id": "GDS3786", "description": "postnatal day 13", "sample_id": [ "GSM374098", "GSM374099", "GSM374100", "GSM374101" ], "type": "age", "id": "GDS3786_2" }, { "dataset_id": "GDS3786", "description": "wild type", "sample_id": [ "GSM374086", "GSM374088", "GSM374090", "GSM374092", "GSM374094", "GSM374096", "GSM374098", "GSM374100" ], "type": "genotype/variation", "id": "GDS3786_3" }, { "dataset_id": "GDS3786", "description": "Snord116del", "sample_id": [ "GSM374087", "GSM374089", "GSM374091", "GSM374093", "GSM374095", "GSM374097", "GSM374099", "GSM374101" ], "type": "genotype/variation", "id": "GDS3786_4" }, { "dataset_id": "GDS3786", "description": "fasting", "sample_id": [ "GSM374088", "GSM374089", "GSM374092", "GSM374093" ], "type": "stress", "id": "GDS3786_5" }, { "dataset_id": "GDS3786", "description": "no fasting", "sample_id": [ "GSM374086", "GSM374087", "GSM374090", "GSM374091", "GSM374094", "GSM374095", "GSM374096", "GSM374097", "GSM374098", "GSM374099", "GSM374100", "GSM374101" ], "type": "stress", "id": "GDS3786_6" } ], "taxid": "10090", "genes": 19378, "aggregation_function": "mean", "name": "GDS3786", "version": 1.0, "instances": "16", "variables": 19382, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3786.tab", "compression": "gz" } ], [ [ "GDS3787.tab" ], { "title": "CXC chemokine ligand 4 effect on monocyte-derived macrophages", "description": "Analysis of blood monocytes differentiated to macrophages (MP) with CXC Chemokine Ligand 4 (CXCL4) and macrophage colony-stimulation factor (M-CSF). In atherosclerotic arteries, monocytes differentiate to MPs in the presence of growth factors, such as M-CSF, and chemokines, such as CXCL4.", "type": "Expression profiling by array", "pubmed_id": "20335529", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE20484", "order": "none", "update_date": "Jun 09 2012", "subsets": [ { "dataset_id": "GDS3787", "description": "macrophage colony-stimulation factor (MCSF)", "sample_id": [ "GSM514669", "GSM514670" ], "type": "agent", "id": "GDS3787_1" }, { "dataset_id": "GDS3787", "description": "CXC chemokine ligand 4 (CXCL4)", "sample_id": [ "GSM514671", "GSM514672" ], "type": "agent", "id": "GDS3787_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3787", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3787.tab", "compression": "gz" } ], [ [ "GDS3788.tab" ], { "title": "Transcription factors YY2 and YY1 knockdown effect on HeLa cells", "description": "Analysis of HeLa cells following shRNA knockdown of zinc-finger transcription factor Yin Yang 1 (YY1), its homolog YY2, or both YY1 and YY2. YY1 plays a critical role in controlling cell proliferation, development and DNA damage responses. Results provide insight into YY2 versus YY1 target genes.", "type": "Expression profiling by array", "pubmed_id": "20215434", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE14964", "order": "none", "update_date": "Jun 24 2012", "subsets": [ { "dataset_id": "GDS3788", "description": "control", "sample_id": [ "GSM373614", "GSM373615", "GSM373616" ], "type": "genotype/variation", "id": "GDS3788_1" }, { "dataset_id": "GDS3788", "description": "shYY1 knock down", "sample_id": [ "GSM373617", "GSM373618", "GSM373619" ], "type": "genotype/variation", "id": "GDS3788_2" }, { "dataset_id": "GDS3788", "description": "shYY2 knock down", "sample_id": [ "GSM373620", "GSM373623", "GSM373621", "GSM373622" ], "type": "genotype/variation", "id": "GDS3788_3" }, { "dataset_id": "GDS3788", "description": "combined shYY1-shYY2 knock down", "sample_id": [ "GSM373624", "GSM373625", "GSM373626" ], "type": "genotype/variation", "id": "GDS3788_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3788", "version": 1.0, "instances": "13", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3788.tab", "compression": "gz" } ], [ [ "GDS3789.tab" ], { "title": "Coronary artery disease response to exercise: CD133+ cells", "description": "Analysis of CD133+ endothelial progenitor cells of coronary artey disease (CAD) patients after 3 months of exercise. Bone marrow derived progenitor cells with endothelial differentiation potential are fewer in CAD. Results provide insight into the impact of exercise on CD133+ cells of CAD patients.", "type": "Expression profiling by array", "pubmed_id": "21235297", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE18608", "order": "none", "update_date": "Mar 14 2011", "subsets": [ { "dataset_id": "GDS3789", "description": "patient 1", "sample_id": [ "GSM462608", "GSM462609" ], "type": "individual", "id": "GDS3789_1" }, { "dataset_id": "GDS3789", "description": "patient 2", "sample_id": [ "GSM462610", "GSM462611" ], "type": "individual", "id": "GDS3789_2" }, { "dataset_id": "GDS3789", "description": "patient 3", "sample_id": [ "GSM462612", "GSM462613" ], "type": "individual", "id": "GDS3789_3" }, { "dataset_id": "GDS3789", "description": "patient 4", "sample_id": [ "GSM462614", "GSM462615" ], "type": "individual", "id": "GDS3789_4" }, { "dataset_id": "GDS3789", "description": "patient 5", "sample_id": [ "GSM462616", "GSM462617" ], "type": "individual", "id": "GDS3789_5" }, { "dataset_id": "GDS3789", "description": "patient 6", "sample_id": [ "GSM462618", "GSM462619" ], "type": "individual", "id": "GDS3789_6" }, { "dataset_id": "GDS3789", "description": "patient 7", "sample_id": [ "GSM462620", "GSM462621" ], "type": "individual", "id": "GDS3789_7" }, { "dataset_id": "GDS3789", "description": "patient 8", "sample_id": [ "GSM462622", "GSM462623" ], "type": "individual", "id": "GDS3789_8" }, { "dataset_id": "GDS3789", "description": "patient 9", "sample_id": [ "GSM462624", "GSM462625" ], "type": "individual", "id": "GDS3789_9" }, { "dataset_id": "GDS3789", "description": "patient 10", "sample_id": [ "GSM462626", "GSM462627" ], "type": "individual", "id": "GDS3789_10" }, { "dataset_id": "GDS3789", "description": "control 1", "sample_id": [ "GSM462628" ], "type": "individual", "id": "GDS3789_11" }, { "dataset_id": "GDS3789", "description": "control 2", "sample_id": [ "GSM462629" ], "type": "individual", "id": "GDS3789_12" }, { "dataset_id": "GDS3789", "description": "control 3", "sample_id": [ "GSM462630" ], "type": "individual", "id": "GDS3789_13" }, { "dataset_id": "GDS3789", "description": "control 4", "sample_id": [ "GSM462631" ], "type": "individual", "id": "GDS3789_14" }, { "dataset_id": "GDS3789", "description": "healthy", "sample_id": [ "GSM462628", "GSM462629", "GSM462630", "GSM462631" ], "type": "disease state", "id": "GDS3789_15" }, { "dataset_id": "GDS3789", "description": "coronary artery disease", "sample_id": [ "GSM462608", "GSM462609", "GSM462610", "GSM462611", "GSM462612", "GSM462613", "GSM462614", "GSM462615", "GSM462616", "GSM462617", "GSM462618", "GSM462619", "GSM462620", "GSM462621", "GSM462622", "GSM462623", "GSM462624", "GSM462625", "GSM462626", "GSM462627" ], "type": "disease state", "id": "GDS3789_16" }, { "dataset_id": "GDS3789", "description": "baseline", "sample_id": [ "GSM462608", "GSM462610", "GSM462612", "GSM462614", "GSM462616", "GSM462618", "GSM462620", "GSM462622", "GSM462624", "GSM462626", "GSM462628", "GSM462629", "GSM462630", "GSM462631" ], "type": "protocol", "id": "GDS3789_17" }, { "dataset_id": "GDS3789", "description": "exercise", "sample_id": [ "GSM462609", "GSM462611", "GSM462613", "GSM462615", "GSM462617", "GSM462619", "GSM462621", "GSM462623", "GSM462625", "GSM462627" ], "type": "protocol", "id": "GDS3789_18" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3789", "version": 1.0, "instances": "24", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3789.tab", "compression": "gz" } ], [ [ "GDS3790.tab" ], { "title": "Erk5 activation effect on endothelial cells", "description": "Analysis of umbilical vein endothelial cells (ECs) transfected with MEK5D, a constitutively active mutant kinase, to activate Erk5. The MEK5/Erk5 MAPK pathway is activated by laminar shear stress in ECs. Results provide insight into the role of the MEK5/Erk5 pathway in endothelial function.", "type": "Expression profiling by array", "pubmed_id": "20551324", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE17939", "order": "none", "update_date": "Mar 14 2011", "subsets": [ { "dataset_id": "GDS3790", "description": "control", "sample_id": [ "GSM448023", "GSM448025", "GSM448043" ], "type": "protocol", "id": "GDS3790_1" }, { "dataset_id": "GDS3790", "description": "MEK5D transfection", "sample_id": [ "GSM448029", "GSM448041", "GSM448047" ], "type": "protocol", "id": "GDS3790_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3790", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3790.tab", "compression": "gz" } ], [ [ "GDS3791.tab" ], { "title": "BRCA1 depletion effect on HeLa cells", "description": "Analysis of HeLa cells depleted for BRCA1. BRCA1, the breast and ovarian cancer specific tumor suppressor, is a transcriptional regulator. Results identify transcriptional targets of BRCA1.", "type": "Expression profiling by array", "pubmed_id": "20103632", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE22259", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS3791", "description": "control", "sample_id": [ "GSM554070", "GSM554072", "GSM554074" ], "type": "protocol", "id": "GDS3791_1" }, { "dataset_id": "GDS3791", "description": "BRCA1 depletion", "sample_id": [ "GSM554071", "GSM554073", "GSM554075" ], "type": "protocol", "id": "GDS3791_2" }, { "dataset_id": "GDS3791", "description": "total RNA", "sample_id": [ "GSM554070", "GSM554071", "GSM554072", "GSM554073" ], "type": "other", "id": "GDS3791_3" }, { "dataset_id": "GDS3791", "description": "mRNA", "sample_id": [ "GSM554074", "GSM554075" ], "type": "other", "id": "GDS3791_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3791", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3791.tab", "compression": "gz" } ], [ [ "GDS3792.tab" ], { "title": "Carboplatin effect on epithelial ovarian cancer cell line: time course", "description": "Analysis of 36M2 epithelial ovarian cancer cells (EOC) treated with 100 uM carboplatin for up to 36 hours. Gene expression profile compared to those from ovarian cells of patients with unfavorable and favorable outcomes. Results provide insight into the mechanism of drug resistance in EOC.", "type": "Expression profiling by array", "pubmed_id": "19038057", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE13525", "order": "none", "update_date": "Mar 15 2011", "subsets": [ { "dataset_id": "GDS3792", "description": "carboplatin", "sample_id": [ "GSM341221", "GSM341222", "GSM341223", "GSM341227", "GSM341228", "GSM341229" ], "type": "agent", "id": "GDS3792_1" }, { "dataset_id": "GDS3792", "description": "control", "sample_id": [ "GSM341224", "GSM341225", "GSM341226", "GSM341230", "GSM341231", "GSM341232" ], "type": "agent", "id": "GDS3792_2" }, { "dataset_id": "GDS3792", "description": "24 h", "sample_id": [ "GSM341221", "GSM341224", "GSM341227", "GSM341230" ], "type": "time", "id": "GDS3792_3" }, { "dataset_id": "GDS3792", "description": "30 h", "sample_id": [ "GSM341222", "GSM341225", "GSM341228", "GSM341231" ], "type": "time", "id": "GDS3792_4" }, { "dataset_id": "GDS3792", "description": "36 h", "sample_id": [ "GSM341223", "GSM341226", "GSM341229", "GSM341232" ], "type": "time", "id": "GDS3792_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3792", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3792.tab", "compression": "gz" } ], [ [ "GDS3793.tab" ], { "title": "Tobacco smoke effect on the placenta", "description": "Analysis of placentas of women who smoked during pregnancy. Smoking increases the risk of preterm delivery and complications such as placental previa and abruption. Results provide insight into the molecular basis of smoke-induced placental abnormalities.", "type": "Expression profiling by array", "pubmed_id": "20092892", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "76", "value_type": "count", "reference_series": "GSE18044", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS3793", "description": "none", "sample_id": [ "GSM451236", "GSM451235", "GSM451234", "GSM451233", "GSM451231", "GSM451230", "GSM451228", "GSM451227", "GSM451226", "GSM451225", "GSM451224", "GSM451222", "GSM451221", "GSM451220", "GSM451219", "GSM451217", "GSM451216", "GSM451215", "GSM451214", "GSM451213", "GSM451212", "GSM451210", "GSM451209", "GSM451208", "GSM451207", "GSM451206", "GSM451205", "GSM451204", "GSM451203", "GSM451202", "GSM451201", "GSM451199", "GSM451197", "GSM451196", "GSM451195", "GSM451193", "GSM451191", "GSM451190", "GSM451189", "GSM451188", "GSM451187", "GSM451186", "GSM451185", "GSM451184", "GSM451183", "GSM451182", "GSM451181", "GSM451180", "GSM451179", "GSM451178", "GSM451177", "GSM451175", "GSM451174", "GSM451173", "GSM451172", "GSM451171", "GSM451170", "GSM451169", "GSM451168", "GSM451167", "GSM451165", "GSM451164", "GSM451163", "GSM451162" ], "type": "agent", "id": "GDS3793_1" }, { "dataset_id": "GDS3793", "description": "tobacco smoke", "sample_id": [ "GSM451232", "GSM451218", "GSM451198", "GSM451194", "GSM451166", "GSM451237", "GSM451229", "GSM451223", "GSM451211", "GSM451200", "GSM451192", "GSM451176" ], "type": "agent", "id": "GDS3793_2" }, { "dataset_id": "GDS3793", "description": "no exposure", "sample_id": [ "GSM451236", "GSM451235", "GSM451234", "GSM451233", "GSM451231", "GSM451230", "GSM451228", "GSM451227", "GSM451226", "GSM451225", "GSM451224", "GSM451222", "GSM451221", "GSM451220", "GSM451219", "GSM451217", "GSM451216", "GSM451215", "GSM451214", "GSM451213", "GSM451212", "GSM451210", "GSM451209", "GSM451208", "GSM451207", "GSM451206", "GSM451205", "GSM451204", "GSM451203", "GSM451202", "GSM451201", "GSM451199", "GSM451197", "GSM451196", "GSM451195", "GSM451193", "GSM451191", "GSM451190", "GSM451189", "GSM451188", "GSM451187", "GSM451186", "GSM451185", "GSM451184", "GSM451183", "GSM451182", "GSM451181", "GSM451180", "GSM451179", "GSM451178", "GSM451177", "GSM451175", "GSM451174", "GSM451173", "GSM451172", "GSM451171", "GSM451170", "GSM451169", "GSM451168", "GSM451167", "GSM451165", "GSM451164", "GSM451163", "GSM451162" ], "type": "dose", "id": "GDS3793_3" }, { "dataset_id": "GDS3793", "description": "light exposure", "sample_id": [ "GSM451232", "GSM451218", "GSM451198", "GSM451194", "GSM451166" ], "type": "dose", "id": "GDS3793_4" }, { "dataset_id": "GDS3793", "description": "heavy exposure", "sample_id": [ "GSM451237", "GSM451229", "GSM451223", "GSM451211", "GSM451200", "GSM451192", "GSM451176" ], "type": "dose", "id": "GDS3793_5" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS3793", "version": 1.0, "instances": "76", "variables": 18870, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3793.tab", "compression": "gz" } ], [ [ "GDS3794.tab" ], { "title": "Rheumatoid arthritis: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells of rheumatoid arthritis (RA) patients. Results provide insight into the molecular pathogenesis and pathophysiology of RA.", "type": "Expression profiling by array", "pubmed_id": "19710928", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE15573", "order": "none", "update_date": "Mar 16 2011", "subsets": [ { "dataset_id": "GDS3794", "description": "control", "sample_id": [ "GSM389710", "GSM389705", "GSM389720", "GSM389713", "GSM389718", "GSM389734", "GSM389728", "GSM389709", "GSM389723", "GSM389732", "GSM389725", "GSM389707", "GSM389715", "GSM389712", "GSM389729" ], "type": "disease state", "id": "GDS3794_1" }, { "dataset_id": "GDS3794", "description": "rheumatoid arthritis", "sample_id": [ "GSM389704", "GSM389703", "GSM389708", "GSM389706", "GSM389711", "GSM389726", "GSM389717", "GSM389733", "GSM389716", "GSM389714", "GSM389735", "GSM389719", "GSM389722", "GSM389731", "GSM389727", "GSM389721", "GSM389724", "GSM389730" ], "type": "disease state", "id": "GDS3794_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3794", "version": 1.0, "instances": "33", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3794.tab", "compression": "gz" } ], [ [ "GDS3795.tab" ], { "title": "Myelodysplastic syndrome: CD34+ hematopoietic stem cells", "description": "Analysis of bone marrow CD34+ hematopoietic stem cells of myelodysplastic syndrome (MDS) patients. MDS is a group of clonal hematopoietic stem cell malignancies characterized by ineffective hematopoiesis. Results provide insight into the molecular pathogenesis of MDS.", "type": "Expression profiling by array", "pubmed_id": "20220779", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "200", "value_type": "count", "reference_series": "GSE19429", "order": "none", "update_date": "Mar 18 2011", "subsets": [ { "dataset_id": "GDS3795", "description": "myelodysplastic syndrome", "sample_id": [ "GSM483297", "GSM483298", "GSM483299", "GSM483300", "GSM483301", "GSM483302", "GSM483303", "GSM483304", "GSM483305", "GSM483306", "GSM483307", "GSM483308", "GSM483309", "GSM483310", "GSM483311", "GSM483312", "GSM483313", "GSM483314", "GSM483315", "GSM483316", "GSM483317", "GSM483318", "GSM483319", "GSM483320", "GSM483321", "GSM483322", "GSM483323", "GSM483324", "GSM483325", "GSM483326", "GSM483327", "GSM483328", "GSM483329", "GSM483330", "GSM483331", "GSM483332", "GSM483333", "GSM483334", "GSM483335", "GSM483336", "GSM483337", "GSM483338", "GSM483339", "GSM483340", "GSM483341", "GSM483342", "GSM483343", "GSM483344", "GSM483345", "GSM483346", "GSM483347", "GSM483348", "GSM483349", "GSM483350", "GSM483351", "GSM483352", "GSM483353", "GSM483354", "GSM483355", "GSM483356", "GSM483357", "GSM483358", "GSM483359", "GSM483360", "GSM483361", "GSM483362", "GSM483363", "GSM483364", "GSM483365", "GSM483366", "GSM483367", "GSM483368", "GSM483369", "GSM483370", "GSM483371", "GSM483372", "GSM483373", "GSM483374", "GSM483375", "GSM483376", "GSM483377", "GSM483378", "GSM483379", "GSM483380", "GSM483381", "GSM483382", "GSM483383", "GSM483384", "GSM483385", "GSM483386", "GSM483387", "GSM483388", "GSM483389", "GSM483390", "GSM483391", "GSM483392", "GSM483393", "GSM483394", "GSM483395", "GSM483396", "GSM483397", "GSM483398", "GSM483399", "GSM483400", "GSM483401", "GSM483402", "GSM483403", "GSM483404", "GSM483405", "GSM483406", "GSM483407", "GSM483408", "GSM483409", "GSM483410", "GSM483411", "GSM483412", "GSM483413", "GSM483414", "GSM483415", "GSM483416", "GSM483417", "GSM483418", "GSM483419", "GSM483420", "GSM483421", "GSM483422", "GSM483423", "GSM483424", "GSM483425", "GSM483426", "GSM483427", "GSM483428", "GSM483429", "GSM483430", "GSM483431", "GSM483432", "GSM483433", "GSM483434", "GSM483435", "GSM483436", "GSM483437", "GSM483438", "GSM483439", "GSM483440", "GSM483441", "GSM483442", "GSM483443", "GSM483444", "GSM483445", "GSM483446", "GSM483447", "GSM483448", "GSM483449", "GSM483450", "GSM483451", "GSM483452", "GSM483453", "GSM483454", "GSM483455", "GSM483456", "GSM483457", "GSM483458", "GSM483459", "GSM483460", "GSM483461", "GSM483462", "GSM483463", "GSM483464", "GSM483465", "GSM483466", "GSM483467", "GSM483468", "GSM483469", "GSM483470", "GSM483471", "GSM483472", "GSM483473", "GSM483474", "GSM483475", "GSM483476", "GSM483477", "GSM483478", "GSM483479" ], "type": "disease state", "id": "GDS3795_1" }, { "dataset_id": "GDS3795", "description": "healthy", "sample_id": [ "GSM483480", "GSM483481", "GSM483482", "GSM483483", "GSM483484", "GSM483485", "GSM483486", "GSM483487", "GSM483488", "GSM483489", "GSM483490", "GSM483491", "GSM483492", "GSM483493", "GSM483494", "GSM483495", "GSM483496" ], "type": "disease state", "id": "GDS3795_2" }, { "dataset_id": "GDS3795", "description": "control", "sample_id": [ "GSM483480", "GSM483481", "GSM483482", "GSM483483", "GSM483484", "GSM483485", "GSM483486", "GSM483487", "GSM483488", "GSM483489", "GSM483490", "GSM483491", "GSM483492", "GSM483493", "GSM483494", "GSM483495", "GSM483496" ], "type": "specimen", "id": "GDS3795_3" }, { "dataset_id": "GDS3795", "description": "refractory anemia", "sample_id": [ "GSM483301", "GSM483302", "GSM483303", "GSM483305", "GSM483307", "GSM483312", "GSM483313", "GSM483317", "GSM483318", "GSM483319", "GSM483322", "GSM483327", "GSM483328", "GSM483330", "GSM483332", "GSM483333", "GSM483336", "GSM483337", "GSM483339", "GSM483351", "GSM483352", "GSM483354", "GSM483358", "GSM483384", "GSM483386", "GSM483388", "GSM483390", "GSM483391", "GSM483396", "GSM483399", "GSM483400", "GSM483401", "GSM483412", "GSM483418", "GSM483420", "GSM483421", "GSM483426", "GSM483428", "GSM483431", "GSM483436", "GSM483442", "GSM483443", "GSM483444", "GSM483447", "GSM483448", "GSM483450", "GSM483455", "GSM483458", "GSM483461", "GSM483462", "GSM483464", "GSM483466", "GSM483468", "GSM483476", "GSM483477" ], "type": "specimen", "id": "GDS3795_4" }, { "dataset_id": "GDS3795", "description": "refractory anemia with excess blasts 1", "sample_id": [ "GSM483300", "GSM483308", "GSM483310", "GSM483311", "GSM483323", "GSM483338", "GSM483353", "GSM483361", "GSM483363", "GSM483364", "GSM483366", "GSM483368", "GSM483371", "GSM483372", "GSM483373", "GSM483374", "GSM483379", "GSM483380", "GSM483381", "GSM483389", "GSM483404", "GSM483405", "GSM483410", "GSM483411", "GSM483413", "GSM483416", "GSM483417", "GSM483419", "GSM483427", "GSM483433", "GSM483434", "GSM483445", "GSM483459", "GSM483465", "GSM483470", "GSM483473", "GSM483478" ], "type": "specimen", "id": "GDS3795_5" }, { "dataset_id": "GDS3795", "description": "refractory anemia with excess blasts 2", "sample_id": [ "GSM483304", "GSM483315", "GSM483320", "GSM483325", "GSM483329", "GSM483331", "GSM483334", "GSM483341", "GSM483343", "GSM483344", "GSM483347", "GSM483348", "GSM483349", "GSM483350", "GSM483356", "GSM483362", "GSM483365", "GSM483367", "GSM483369", "GSM483370", "GSM483375", "GSM483376", "GSM483377", "GSM483378", "GSM483385", "GSM483402", "GSM483403", "GSM483406", "GSM483407", "GSM483408", "GSM483414", "GSM483415", "GSM483424", "GSM483437", "GSM483439", "GSM483440", "GSM483446", "GSM483449", "GSM483454", "GSM483456", "GSM483460", "GSM483463", "GSM483471" ], "type": "specimen", "id": "GDS3795_6" }, { "dataset_id": "GDS3795", "description": "refractory anemia with ringed sideroblasts", "sample_id": [ "GSM483297", "GSM483298", "GSM483299", "GSM483306", "GSM483309", "GSM483314", "GSM483316", "GSM483321", "GSM483324", "GSM483326", "GSM483335", "GSM483340", "GSM483342", "GSM483345", "GSM483346", "GSM483355", "GSM483357", "GSM483359", "GSM483360", "GSM483382", "GSM483383", "GSM483387", "GSM483392", "GSM483393", "GSM483394", "GSM483395", "GSM483397", "GSM483398", "GSM483409", "GSM483422", "GSM483423", "GSM483425", "GSM483429", "GSM483430", "GSM483432", "GSM483435", "GSM483438", "GSM483441", "GSM483451", "GSM483452", "GSM483453", "GSM483457", "GSM483467", "GSM483469", "GSM483472", "GSM483474", "GSM483475", "GSM483479" ], "type": "specimen", "id": "GDS3795_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3795", "version": 1.0, "instances": "200", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3795.tab", "compression": "gz" } ], [ [ "GDS3796.tab" ], { "title": "Alkylphospholipids effect on HaCaT keratinocytes", "description": "Analysis of HaCaT keratinocytes treated with alkylphospholipids (APLs) Ino-C2-PAF, Glc-PAF, and edelfosine. APLs interfere with a variety of key enzymes implicated in cell growth, motility, invasion, and apoptosis. Results provide insight into mechanism of action of APLs.", "type": "Expression profiling by array", "pubmed_id": "21681147", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE20722", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3796", "description": "control", "sample_id": [ "GSM520257", "GSM520258", "GSM520259" ], "type": "agent", "id": "GDS3796_1" }, { "dataset_id": "GDS3796", "description": "InoPAF", "sample_id": [ "GSM520260", "GSM520261", "GSM520262" ], "type": "agent", "id": "GDS3796_2" }, { "dataset_id": "GDS3796", "description": "GlcPAF", "sample_id": [ "GSM520263", "GSM520264", "GSM520265" ], "type": "agent", "id": "GDS3796_3" }, { "dataset_id": "GDS3796", "description": "edelfosine", "sample_id": [ "GSM520266", "GSM520267", "GSM520268" ], "type": "agent", "id": "GDS3796_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS3796", "version": 1.0, "instances": "12", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3796.tab", "compression": "gz" } ], [ [ "GDS3797.tab" ], { "title": "beta-TrCP inhibition and androgen ablation effects on prostate cancer cell line LAPC4", "description": "Analysis of androgen-sensitive LAPC4 prostate cancer cells following beta-TrCP knockdown and androgen ablation. beta-TrCP inhibition reduces prostate cancer growth, showing an additive effect with androgen ablation. Results provide insight into the molecular basis of beta-TrCP inhibition.", "type": "Expression profiling by array", "pubmed_id": "20140206", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE19141", "order": "none", "update_date": "Jun 23 2012", "subsets": [ { "dataset_id": "GDS3797", "description": "control", "sample_id": [ "GSM474585", "GSM474586" ], "type": "genotype/variation", "id": "GDS3797_1" }, { "dataset_id": "GDS3797", "description": "beta-TrCP knockdown", "sample_id": [ "GSM474587", "GSM474588" ], "type": "genotype/variation", "id": "GDS3797_2" }, { "dataset_id": "GDS3797", "description": "FCS (control)", "sample_id": [ "GSM474585", "GSM474587" ], "type": "growth protocol", "id": "GDS3797_3" }, { "dataset_id": "GDS3797", "description": "CSS (androgen ablation)", "sample_id": [ "GSM474586", "GSM474588" ], "type": "growth protocol", "id": "GDS3797_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3797", "version": 1.0, "instances": "4", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3797.tab", "compression": "gz" } ], [ [ "GDS3798.tab" ], { "title": "Peroxisome proliferator-activated receptor gamma 2 activation effect on marrow mesenchymal stem cells: time course", "description": "Temporal analysis of U-33 marrow mesenchymal stem cell (MSC) line stably transfected with PPARg2, following treatment with PPARg agonist Rosiglitazone (Rosi). Results provide insight into the molecular mechanisms by which PPARg2 suppresses osteoblastogenesis and promotes adipogenesis in MSC.", "type": "Expression profiling by array", "pubmed_id": "19115254", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE10192", "order": "none", "update_date": "Jun 22 2012", "subsets": [ { "dataset_id": "GDS3798", "description": "control", "sample_id": [ "GSM257423", "GSM257427", "GSM257422", "GSM257426", "GSM257414", "GSM257416", "GSM257412", "GSM257415", "GSM257418", "GSM257419", "GSM257417", "GSM257463" ], "type": "genotype/variation", "id": "GDS3798_1" }, { "dataset_id": "GDS3798", "description": "PPARg2 expression", "sample_id": [ "GSM257421", "GSM257425", "GSM257420", "GSM257424", "GSM257452", "GSM257454", "GSM257451", "GSM257453", "GSM257456", "GSM257458", "GSM257455", "GSM257457" ], "type": "genotype/variation", "id": "GDS3798_2" }, { "dataset_id": "GDS3798", "description": "DMSO control", "sample_id": [ "GSM257418", "GSM257416", "GSM257419", "GSM257423", "GSM257427", "GSM257456", "GSM257458", "GSM257421", "GSM257425", "GSM257452", "GSM257454", "GSM257414" ], "type": "agent", "id": "GDS3798_3" }, { "dataset_id": "GDS3798", "description": "Rosiglitazone", "sample_id": [ "GSM257417", "GSM257415", "GSM257463", "GSM257422", "GSM257426", "GSM257455", "GSM257457", "GSM257420", "GSM257424", "GSM257451", "GSM257453", "GSM257412" ], "type": "agent", "id": "GDS3798_4" }, { "dataset_id": "GDS3798", "description": "2 hrs", "sample_id": [ "GSM257424", "GSM257420", "GSM257425", "GSM257421", "GSM257426", "GSM257422", "GSM257427", "GSM257423" ], "type": "time", "id": "GDS3798_5" }, { "dataset_id": "GDS3798", "description": "24 hrs", "sample_id": [ "GSM257453", "GSM257451", "GSM257454", "GSM257452", "GSM257412", "GSM257416", "GSM257414", "GSM257415" ], "type": "time", "id": "GDS3798_6" }, { "dataset_id": "GDS3798", "description": "72 hrs", "sample_id": [ "GSM257457", "GSM257455", "GSM257458", "GSM257456", "GSM257463", "GSM257417", "GSM257419", "GSM257418" ], "type": "time", "id": "GDS3798_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3798", "version": 1.0, "instances": "24", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3798.tab", "compression": "gz" } ], [ [ "GDS3799.tab" ], { "title": "Bone morphogenetic protein type II receptor mutation effect on lung", "description": "Analysis of lung from transgenics expressing a BMPR2 tail domain mutation (BMPR2R899X) in smooth muscle. Nine weeks of BMPR2R899X expression can result in elevated right ventricular systolic pressures (RVSP), producing a mutant phenotype relevant to human pulmonary arterial hypertension (PAH).", "type": "Expression profiling by array", "pubmed_id": "18723761", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11018", "order": "none", "update_date": "Mar 18 2011", "subsets": [ { "dataset_id": "GDS3799", "description": "control", "sample_id": [ "GSM278697", "GSM278698" ], "type": "disease state", "id": "GDS3799_1" }, { "dataset_id": "GDS3799", "description": "normal right ventricular systolic pressure", "sample_id": [ "GSM278699", "GSM278700" ], "type": "disease state", "id": "GDS3799_2" }, { "dataset_id": "GDS3799", "description": "elevated right ventricular systolic pressure", "sample_id": [ "GSM278701", "GSM278702" ], "type": "disease state", "id": "GDS3799_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3799", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3799.tab", "compression": "gz" } ], [ [ "GDS38.tab" ], { "title": "Cell cycle, alpha-factor block-release time course", "description": "Culture synchronized by alpha factor arrest, then samples taken every 7 minutes as cells went through cell cycle. Included as part of a comprehensive identification of cell cycle-regulated genes.", "type": "Expression profiling by array", "pubmed_id": [ "9843569", "10963673" ], "platform": "GPL59", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7680", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log ratio", "reference_series": "GSE22", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS38", "description": "7 min interval #13", "sample_id": [ "GSM980" ], "type": "time", "id": "GDS38_1" }, { "dataset_id": "GDS38", "description": "7 min interval #14", "sample_id": [ "GSM863" ], "type": "time", "id": "GDS38_2" }, { "dataset_id": "GDS38", "description": "7 min interval #15", "sample_id": [ "GSM921" ], "type": "time", "id": "GDS38_3" }, { "dataset_id": "GDS38", "description": "7 min interval #16", "sample_id": [ "GSM920" ], "type": "time", "id": "GDS38_4" }, { "dataset_id": "GDS38", "description": "7 min interval #17", "sample_id": [ "GSM988" ], "type": "time", "id": "GDS38_5" }, { "dataset_id": "GDS38", "description": "7 min interval #18", "sample_id": [ "GSM922" ], "type": "time", "id": "GDS38_6" }, { "dataset_id": "GDS38", "description": "7 min interval #19", "sample_id": [ "GSM989" ], "type": "time", "id": "GDS38_7" }, { "dataset_id": "GDS38", "description": "7 min interval #20", "sample_id": [ "GSM858" ], "type": "time", "id": "GDS38_8" }, { "dataset_id": "GDS38", "description": "7 min interval #21", "sample_id": [ "GSM902" ], "type": "time", "id": "GDS38_9" }, { "dataset_id": "GDS38", "description": "7 min interval #22", "sample_id": [ "GSM931" ], "type": "time", "id": "GDS38_10" }, { "dataset_id": "GDS38", "description": "7 min interval #23", "sample_id": [ "GSM861" ], "type": "time", "id": "GDS38_11" }, { "dataset_id": "GDS38", "description": "7 min interval #25", "sample_id": [ "GSM862" ], "type": "time", "id": "GDS38_12" }, { "dataset_id": "GDS38", "description": "7 min interval #27", "sample_id": [ "GSM923" ], "type": "time", "id": "GDS38_13" }, { "dataset_id": "GDS38", "description": "7 min interval #28", "sample_id": [ "GSM860" ], "type": "time", "id": "GDS38_14" }, { "dataset_id": "GDS38", "description": "7 min interval #29", "sample_id": [ "GSM924" ], "type": "time", "id": "GDS38_15" }, { "dataset_id": "GDS38", "description": "7 min interval #30", "sample_id": [ "GSM859" ], "type": "time", "id": "GDS38_16" } ], "taxid": "4932", "genes": 6179, "aggregation_function": "mean", "name": "GDS38", "version": 1.0, "instances": "16", "variables": 6181, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS38.tab", "compression": "gz" } ], [ [ "GDS3800.tab" ], { "title": "von Hippel-Lindau (VHL) tumor suppressor protein deficiency effect on pancreatic islet cells", "description": "Analysis of pancreatic islet cells deficient for the von Hippel-Lindau tumor suppressor protein from 18 to 26 wk-old animals. Loss of Vhlh in beta-cells leads to impaired glucose tolerance and to abnormal insulin secretion. Results provide insight into the role of Vhlh in pancreatic beta cells.", "type": "Expression profiling by array", "pubmed_id": "19056893", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE11484", "order": "none", "update_date": "Mar 22 2011", "subsets": [ { "dataset_id": "GDS3800", "description": "control", "sample_id": [ "GSM289098", "GSM289160", "GSM289161" ], "type": "genotype/variation", "id": "GDS3800_1" }, { "dataset_id": "GDS3800", "description": "Vhlh knockout", "sample_id": [ "GSM289162", "GSM289163", "GSM289164" ], "type": "genotype/variation", "id": "GDS3800_2" }, { "dataset_id": "GDS3800", "description": "18 weeks", "sample_id": [ "GSM289161", "GSM289164" ], "type": "age", "id": "GDS3800_3" }, { "dataset_id": "GDS3800", "description": "20 weeks", "sample_id": [ "GSM289160", "GSM289163" ], "type": "age", "id": "GDS3800_4" }, { "dataset_id": "GDS3800", "description": "26 weeks", "sample_id": [ "GSM289098", "GSM289162" ], "type": "age", "id": "GDS3800_5" }, { "dataset_id": "GDS3800", "description": "female", "sample_id": [ "GSM289160", "GSM289163" ], "type": "gender", "id": "GDS3800_6" }, { "dataset_id": "GDS3800", "description": "male", "sample_id": [ "GSM289098", "GSM289161", "GSM289162", "GSM289164" ], "type": "gender", "id": "GDS3800_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3800", "version": 1.0, "instances": "6", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3800.tab", "compression": "gz" } ], [ [ "GDS3801.tab" ], { "title": "Lung response to chronic and acute exposure to ingested arsenic", "description": "Analysis of lungs of C57BL/6 males, on defined diets, chronically exposed to environmentally relevant concentrations of arsenic (As) in food or drinking water. Acute exposure to As through intraperitoneal injection also examined. Results provide insight into the basis of As toxicity from ingestion.", "type": "Expression profiling by array", "pubmed_id": "19654921", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "55", "value_type": "transformed count", "reference_series": "GSE11056", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3801", "description": "AIN-76A diet", "sample_id": [ "GSM279231", "GSM279232", "GSM279234", "GSM279235", "GSM279243", "GSM279261", "GSM279262", "GSM279263", "GSM279264", "GSM279269", "GSM279270", "GSM279272", "GSM279275", "GSM279233", "GSM279236", "GSM279239", "GSM279247", "GSM279252", "GSM279240", "GSM279245", "GSM279248", "GSM279250", "GSM279253", "GSM279238", "GSM279241", "GSM279251", "GSM279255", "GSM279268", "GSM279221", "GSM279260", "GSM279267", "GSM279271", "GSM279274", "GSM279230", "GSM279249", "GSM279258", "GSM279265", "GSM279273" ], "type": "growth protocol", "id": "GDS3801_1" }, { "dataset_id": "GDS3801", "description": "LRD-5001 diet", "sample_id": [ "GSM279222", "GSM279224", "GSM279225", "GSM279226", "GSM279227", "GSM279229", "GSM279246", "GSM279254", "GSM279256", "GSM279257", "GSM279259", "GSM279266", "GSM279223", "GSM279228", "GSM279237", "GSM279242", "GSM279244" ], "type": "growth protocol", "id": "GDS3801_2" }, { "dataset_id": "GDS3801", "description": "sodium arsenite", "sample_id": [ "GSM279234", "GSM279262", "GSM279269", "GSM279272", "GSM279222", "GSM279226", "GSM279246", "GSM279259", "GSM279266", "GSM279231", "GSM279243", "GSM279261", "GSM279263", "GSM279227", "GSM279254", "GSM279257", "GSM279230", "GSM279249", "GSM279258", "GSM279265", "GSM279273", "GSM279223", "GSM279228", "GSM279237", "GSM279242", "GSM279244", "GSM279240", "GSM279245", "GSM279248", "GSM279250", "GSM279253" ], "type": "agent", "id": "GDS3801_3" }, { "dataset_id": "GDS3801", "description": "dexamethasone", "sample_id": [ "GSM279233", "GSM279236", "GSM279239", "GSM279247", "GSM279252" ], "type": "agent", "id": "GDS3801_4" }, { "dataset_id": "GDS3801", "description": "none", "sample_id": [ "GSM279232", "GSM279235", "GSM279264", "GSM279270", "GSM279275", "GSM279224", "GSM279225", "GSM279229", "GSM279256" ], "type": "agent", "id": "GDS3801_5" }, { "dataset_id": "GDS3801", "description": "saline", "sample_id": [ "GSM279221", "GSM279260", "GSM279267", "GSM279271", "GSM279274" ], "type": "agent", "id": "GDS3801_6" }, { "dataset_id": "GDS3801", "description": "sodium arsenite, dexamethasone", "sample_id": [ "GSM279238", "GSM279241", "GSM279251", "GSM279255", "GSM279268" ], "type": "agent", "id": "GDS3801_7" }, { "dataset_id": "GDS3801", "description": "injection", "sample_id": [ "GSM279240", "GSM279245", "GSM279248", "GSM279250", "GSM279253", "GSM279233", "GSM279236", "GSM279239", "GSM279247", "GSM279252", "GSM279221", "GSM279260", "GSM279267", "GSM279271", "GSM279274", "GSM279238", "GSM279241", "GSM279251", "GSM279255", "GSM279268" ], "type": "protocol", "id": "GDS3801_8" }, { "dataset_id": "GDS3801", "description": "added to drinking water", "sample_id": [ "GSM279234", "GSM279262", "GSM279269", "GSM279272", "GSM279222", "GSM279226", "GSM279246", "GSM279259", "GSM279266", "GSM279231", "GSM279243", "GSM279261", "GSM279263", "GSM279227", "GSM279254", "GSM279257" ], "type": "protocol", "id": "GDS3801_9" }, { "dataset_id": "GDS3801", "description": "added to food", "sample_id": [ "GSM279230", "GSM279249", "GSM279258", "GSM279265", "GSM279273", "GSM279223", "GSM279228", "GSM279237", "GSM279242", "GSM279244" ], "type": "protocol", "id": "GDS3801_10" }, { "dataset_id": "GDS3801", "description": "control", "sample_id": [ "GSM279232", "GSM279235", "GSM279264", "GSM279270", "GSM279275", "GSM279224", "GSM279225", "GSM279229", "GSM279256" ], "type": "protocol", "id": "GDS3801_11" }, { "dataset_id": "GDS3801", "description": "n/a", "sample_id": [ "GSM279221", "GSM279260", "GSM279267", "GSM279271", "GSM279274", "GSM279232", "GSM279235", "GSM279264", "GSM279270", "GSM279275", "GSM279224", "GSM279225", "GSM279229", "GSM279256" ], "type": "dose", "id": "GDS3801_12" }, { "dataset_id": "GDS3801", "description": "10ppb", "sample_id": [ "GSM279234", "GSM279262", "GSM279269", "GSM279272", "GSM279222", "GSM279226", "GSM279246", "GSM279259", "GSM279266", "GSM279230", "GSM279249", "GSM279258", "GSM279265", "GSM279273", "GSM279223", "GSM279228", "GSM279237", "GSM279242", "GSM279244" ], "type": "dose", "id": "GDS3801_13" }, { "dataset_id": "GDS3801", "description": "100ppb", "sample_id": [ "GSM279231", "GSM279243", "GSM279261", "GSM279263", "GSM279227", "GSM279254", "GSM279257" ], "type": "dose", "id": "GDS3801_14" }, { "dataset_id": "GDS3801", "description": "1mg/kg", "sample_id": [ "GSM279240", "GSM279245", "GSM279248", "GSM279250", "GSM279253", "GSM279233", "GSM279236", "GSM279239", "GSM279247", "GSM279252", "GSM279238", "GSM279241", "GSM279251", "GSM279255", "GSM279268" ], "type": "dose", "id": "GDS3801_15" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3801", "version": 1.0, "instances": "55", "variables": 26686, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3801.tab", "compression": "gz" } ], [ [ "GDS3802.tab" ], { "title": "P19CL6 cardiogenic embryonal carcinoma cell differentiation into a cardiac lineage: time course", "description": "Temporal analysis of P19CL6 cells induced to differentiate into a cardiac lineage in the presence of DMSO. These results, together with results from E10.5 second heart field (SHF)-containing pharyngeal arch and E12.5 heart, provide insight into Nkx2.5 target genes relevant specifically to SHF.", "type": "Expression profiling by array", "pubmed_id": "20549724", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE17936", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS3802", "description": "DMSO", "sample_id": [ "GSM447355", "GSM447356", "GSM447357", "GSM447358", "GSM447359", "GSM447360", "GSM447361", "GSM447362", "GSM447363", "GSM447364", "GSM447365", "GSM447366", "GSM447367" ], "type": "growth protocol", "id": "GDS3802_1" }, { "dataset_id": "GDS3802", "description": "control", "sample_id": [ "GSM447352", "GSM447353", "GSM447354" ], "type": "growth protocol", "id": "GDS3802_2" }, { "dataset_id": "GDS3802", "description": "n/a", "sample_id": [ "GSM447352", "GSM447353", "GSM447354" ], "type": "time", "id": "GDS3802_3" }, { "dataset_id": "GDS3802", "description": "4 days", "sample_id": [ "GSM447355", "GSM447356", "GSM447357" ], "type": "time", "id": "GDS3802_4" }, { "dataset_id": "GDS3802", "description": "6 days", "sample_id": [ "GSM447358", "GSM447359" ], "type": "time", "id": "GDS3802_5" }, { "dataset_id": "GDS3802", "description": "8 days", "sample_id": [ "GSM447360", "GSM447361", "GSM447362" ], "type": "time", "id": "GDS3802_6" }, { "dataset_id": "GDS3802", "description": "10 days", "sample_id": [ "GSM447363", "GSM447364", "GSM447365" ], "type": "time", "id": "GDS3802_7" }, { "dataset_id": "GDS3802", "description": "12 days", "sample_id": [ "GSM447366", "GSM447367" ], "type": "time", "id": "GDS3802_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3802", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3802.tab", "compression": "gz" } ], [ [ "GDS3803.tab" ], { "title": "Embryonic pharyngeal arch and embryonic heart", "description": "Analysis of second heart field (SHF)-containing pharyngeal arch from E10.5 embryos and heart from E12.5 embryos. These results, together with results from P19CL6 cells induced to differentiate into a cardiac lineage, provide insight into Nkx2.5 target genes relevant specifically to the SHF.", "type": "Expression profiling by array", "pubmed_id": "20549724", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE17936", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS3803", "description": "pharyngeal arch", "sample_id": [ "GSM448017", "GSM448016", "GSM448015", "GSM448014", "GSM448013" ], "type": "tissue", "id": "GDS3803_1" }, { "dataset_id": "GDS3803", "description": "heart", "sample_id": [ "GSM448021", "GSM448020", "GSM448019", "GSM448018", "GSM448022" ], "type": "tissue", "id": "GDS3803_2" }, { "dataset_id": "GDS3803", "description": "E10.5", "sample_id": [ "GSM448017", "GSM448016", "GSM448015", "GSM448014", "GSM448013" ], "type": "age", "id": "GDS3803_3" }, { "dataset_id": "GDS3803", "description": "E12.5", "sample_id": [ "GSM448021", "GSM448020", "GSM448019", "GSM448018", "GSM448022" ], "type": "age", "id": "GDS3803_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3803", "version": 1.0, "instances": "10", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3803.tab", "compression": "gz" } ], [ [ "GDS3804.tab" ], { "title": "Cold effect on inguinal white adipose tissue: time course", "description": "Analysis of white adipose tissue (WAT) from C57/Bl6 males exposed to 4 degrees C for up to 5 weeks. The cold induces an angiogenic switch, and conversion to a more BAT-like phenotype, in WAT. Results provide insight into molecular mechanisms of angiogenesis in relation to adipose tissue metabolism.", "type": "Expression profiling by array", "pubmed_id": "19117550", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE13432", "order": "none", "update_date": "Apr 05 2011", "subsets": [ { "dataset_id": "GDS3804", "description": "4 degrees C", "sample_id": [ "GSM338986", "GSM338987", "GSM338988", "GSM338992", "GSM338993", "GSM338994" ], "type": "temperature", "id": "GDS3804_1" }, { "dataset_id": "GDS3804", "description": "30 degrees C", "sample_id": [ "GSM338983", "GSM338984", "GSM338985", "GSM338989", "GSM338990", "GSM338991" ], "type": "temperature", "id": "GDS3804_2" }, { "dataset_id": "GDS3804", "description": "1 week", "sample_id": [ "GSM338986", "GSM338987", "GSM338988", "GSM338983", "GSM338984", "GSM338985" ], "type": "time", "id": "GDS3804_3" }, { "dataset_id": "GDS3804", "description": "5 weeks", "sample_id": [ "GSM338992", "GSM338993", "GSM338994", "GSM338989", "GSM338990", "GSM338991" ], "type": "time", "id": "GDS3804_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3804", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3804.tab", "compression": "gz" } ], [ [ "GDS3805.tab" ], { "title": "Liver response to antagonism of endogenous microRNA-122 using a chemically modified antisense oligonucleotide: time course", "description": "Analysis of liver from NMRI females treated with 25mg/kg LNA (locked nucleic acid)-antimiR-122 on day 2 and sacrificed at days 3, 9 and 23. Results provide insight into the utility of LNA-modified oligonucleotides in silencing miRNAs in vivo.", "type": "Expression profiling by array", "pubmed_id": "18158304", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE13948", "order": "none", "update_date": "Apr 05 2011", "subsets": [ { "dataset_id": "GDS3805", "description": "control (saline)", "sample_id": [ "GSM351082", "GSM351083", "GSM351084", "GSM351085", "GSM351086", "GSM351087", "GSM351091", "GSM351092", "GSM351093" ], "type": "agent", "id": "GDS3805_1" }, { "dataset_id": "GDS3805", "description": "LNA-antimiR", "sample_id": [ "GSM351073", "GSM351074", "GSM351075", "GSM351076", "GSM351077", "GSM351078", "GSM351079", "GSM351080", "GSM351081", "GSM351088", "GSM351089", "GSM351090" ], "type": "agent", "id": "GDS3805_2" }, { "dataset_id": "GDS3805", "description": "1 day", "sample_id": [ "GSM351076", "GSM351077", "GSM351078", "GSM351082", "GSM351083", "GSM351084" ], "type": "time", "id": "GDS3805_3" }, { "dataset_id": "GDS3805", "description": "2 days", "sample_id": [ "GSM351079", "GSM351080", "GSM351081", "GSM351085", "GSM351086", "GSM351087" ], "type": "time", "id": "GDS3805_4" }, { "dataset_id": "GDS3805", "description": "21 days", "sample_id": [ "GSM351073", "GSM351074", "GSM351075", "GSM351088", "GSM351089", "GSM351090", "GSM351091", "GSM351092", "GSM351093" ], "type": "time", "id": "GDS3805_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3805", "version": 1.0, "instances": "21", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3805.tab", "compression": "gz" } ], [ [ "GDS3806.tab" ], { "title": "Atopic dermatitis", "description": "Analysis of non-lesional epidermal samples from individuals with atopic dermatitis (AD). AD is characterized by dry eczematous skin lesions, a relapsing and often chronic course, and an intense intractable pruritus. Results provide insight into the molecular pathogenesis of AD.", "type": "Expression profiling by array", "pubmed_id": "21163515", "platform": "GPL2700", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24354", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE26952", "order": "none", "update_date": "Apr 06 2011", "subsets": [ { "dataset_id": "GDS3806", "description": "atopic dermatitis", "sample_id": [ "GSM663510", "GSM663511", "GSM663512", "GSM663513", "GSM663514" ], "type": "disease state", "id": "GDS3806_1" }, { "dataset_id": "GDS3806", "description": "psoriasis", "sample_id": [ "GSM663515", "GSM663516", "GSM663517", "GSM663518" ], "type": "disease state", "id": "GDS3806_2" }, { "dataset_id": "GDS3806", "description": "non-atopic control", "sample_id": [ "GSM663519", "GSM663520", "GSM663521", "GSM663522", "GSM663523", "GSM663524", "GSM663525" ], "type": "disease state", "id": "GDS3806_3" } ], "taxid": "9606", "genes": 22006, "aggregation_function": "mean", "name": "GDS3806", "version": 1.0, "instances": "16", "variables": 22008, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3806.tab", "compression": "gz" } ], [ [ "GDS3807.tab" ], { "title": "Sebacic acid supplemented diet effect on db/db liver", "description": "Analysis of livers of db/db animals fed a diet supplemented with sebacic acid (SA) for 6 weeks. SA supplementation improves fasting plasma glucose, HbA1c and glucose tolerance in this model of type 2 diabetes. Results provide insight into the mechanism of action of SA.", "type": "Expression profiling by array", "pubmed_id": "20977585", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE21083", "order": "none", "update_date": "Jun 11 2014", "subsets": [ { "dataset_id": "GDS3807", "description": "control", "sample_id": [ "GSM527058", "GSM527059", "GSM527060", "GSM527061", "GSM527062", "GSM527063", "GSM527064", "GSM527065", "GSM527066", "GSM527067", "GSM527068", "GSM527069", "GSM527070", "GSM527071", "GSM527072" ], "type": "agent", "id": "GDS3807_1" }, { "dataset_id": "GDS3807", "description": "sebacic acid", "sample_id": [ "GSM527073", "GSM527074", "GSM527075", "GSM527076", "GSM527077", "GSM527078", "GSM527079", "GSM527080", "GSM527081", "GSM527082", "GSM527083", "GSM527084", "GSM527085", "GSM527086", "GSM527087" ], "type": "agent", "id": "GDS3807_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3807", "version": 1.0, "instances": "30", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3807.tab", "compression": "gz" } ], [ [ "GDS3808.tab" ], { "title": "Trans-10, cis-12 conjugated linoleic acid and metformin effect on 3T3-L1 adipocytes", "description": "Analysis of adipocytes treated with trans-10, cis-12 conjugated linoleic acid in conjunction with AMPK activator metformin. The combined treatment results in greater triglyceride (TG) reduction than with the individual chemicals. Results provide insight into molecular basis of the TG reduction.", "type": "Expression profiling by array", "pubmed_id": "19828681", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE14888", "order": "none", "update_date": "Jun 22 2012", "subsets": [ { "dataset_id": "GDS3808", "description": "conjugated linoleic acid", "sample_id": [ "GSM372033", "GSM372034", "GSM372035" ], "type": "agent", "id": "GDS3808_1" }, { "dataset_id": "GDS3808", "description": "linoleic acid", "sample_id": [ "GSM372030", "GSM372031", "GSM372032" ], "type": "agent", "id": "GDS3808_2" }, { "dataset_id": "GDS3808", "description": "metformin", "sample_id": [ "GSM372036", "GSM372037", "GSM372038" ], "type": "agent", "id": "GDS3808_3" }, { "dataset_id": "GDS3808", "description": "conjugated linoleic acid + metformin", "sample_id": [ "GSM372039", "GSM372040", "GSM372041" ], "type": "agent", "id": "GDS3808_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3808", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3808.tab", "compression": "gz" } ], [ [ "GDS3809.tab" ], { "title": "TNF receptor and lymphotoxin beta -receptor activation effect on aortic smooth muscle cells in vitro: time course", "description": "Analysis of cultured aortic smooth muscle cells (SMCs) stimulated with a combination of tumor necrosis factor (TNF) and \u03b1-LT\u03b2R monoclonal antibody for up to 24 hours. SMCs stimulated by TNF/\u03b1-LT\u03b2R mAb, but not with either agent alone, differentiate into lymphoid tissue organizer (LTO)-like cells", "type": "Expression profiling by array", "pubmed_id": [ "20139367", "20139359" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE15062", "order": "none", "update_date": "Jun 22 2012", "subsets": [ { "dataset_id": "GDS3809", "description": "control", "sample_id": [ "GSM375931", "GSM375930", "GSM376019", "GSM376018", "GSM376017", "GSM376012" ], "type": "agent", "id": "GDS3809_1" }, { "dataset_id": "GDS3809", "description": "\u03b1-LT\u03b2R monoclonal antibody", "sample_id": [ "GSM376025", "GSM376020", "GSM376030", "GSM376028", "GSM376027", "GSM376026" ], "type": "agent", "id": "GDS3809_2" }, { "dataset_id": "GDS3809", "description": "tumor necrosis factor", "sample_id": [ "GSM376032", "GSM376031", "GSM376039", "GSM376038", "GSM376037", "GSM376034" ], "type": "agent", "id": "GDS3809_3" }, { "dataset_id": "GDS3809", "description": "tumor necrosis factor + \u03b1-LT\u03b2R antibody", "sample_id": [ "GSM376048", "GSM376047", "GSM376045" ], "type": "agent", "id": "GDS3809_4" }, { "dataset_id": "GDS3809", "description": "2 hours", "sample_id": [ "GSM376020", "GSM376031", "GSM375930" ], "type": "time", "id": "GDS3809_5" }, { "dataset_id": "GDS3809", "description": "6 hours", "sample_id": [ "GSM375931", "GSM376025", "GSM376032" ], "type": "time", "id": "GDS3809_6" }, { "dataset_id": "GDS3809", "description": "24 hours", "sample_id": [ "GSM376012", "GSM376017", "GSM376018", "GSM376019", "GSM376026", "GSM376027", "GSM376028", "GSM376030", "GSM376034", "GSM376037", "GSM376038", "GSM376039", "GSM376045", "GSM376047", "GSM376048" ], "type": "time", "id": "GDS3809_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3809", "version": 1.0, "instances": "21", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3809.tab", "compression": "gz" } ], [ [ "GDS3810.tab" ], { "title": "TNF receptor and lymphotoxin beta -receptor activation effect on aortic endothelial cells in vitro", "description": "Analysis of cultured aortic endothelial cells stimulated with a combination of tumor necrosis factor (TNF) and \u03b1-LT\u00dfR antibody for 24 hours. Unlike similarly-treated aortic smooth muscle cells (SMCs), the endothelial cells did not differentiate into a lymphoid tissue organizer (LTO) phenotype.", "type": "Expression profiling by array", "pubmed_id": "20139367", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE19139", "order": "none", "update_date": "Jun 22 2012", "subsets": [ { "dataset_id": "GDS3810", "description": "control", "sample_id": [ "GSM474526", "GSM474527", "GSM474528" ], "type": "agent", "id": "GDS3810_1" }, { "dataset_id": "GDS3810", "description": "tumor necrosis factor + \u03b1-LT\u00dfR antibody", "sample_id": [ "GSM474529", "GSM474530" ], "type": "agent", "id": "GDS3810_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3810", "version": 1.0, "instances": "5", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3810.tab", "compression": "gz" } ], [ [ "GDS3811.tab" ], { "title": "\u03b2-Catenin stabilized cardiac progenitor cells in vivo", "description": "Analysis of \u03b2-Catenin-stabilized cardiac progenitor cells (CPCs) from E9.0 mutant embryos, before cardiac dysfunction. \u03b2-Catenin signaling promotes expansion of multipotent CPCs in vivo. Results provide insight into the molecular mechanisms underlying CPC expansion.", "type": "Expression profiling by array", "pubmed_id": "19620969", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE15232", "order": "none", "update_date": "Apr 06 2011", "subsets": [ { "dataset_id": "GDS3811", "description": "wild type", "sample_id": [ "GSM380347", "GSM380348", "GSM380349" ], "type": "genotype/variation", "id": "GDS3811_1" }, { "dataset_id": "GDS3811", "description": "\u03b2-Catenin-stabilized mutant", "sample_id": [ "GSM380350", "GSM380351", "GSM380352" ], "type": "genotype/variation", "id": "GDS3811_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3811", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3811.tab", "compression": "gz" } ], [ [ "GDS3812.tab" ], { "title": "Kr\u00fcppel-like zinc finger transcription factor Gli-similar 3 knockout effect on embryonic pancreas", "description": "Analysis of pancreas from E15.5 embryos deficient in transcription factor Gli-similar 3 (Glis3). The Glis3zf/zf mutant pancreas shows a dramatic loss of \u03b2 and \u03b4 cells, contrasting a smaller relative loss of \u03b1, PP, and \u025b cells. Results provide insight into the role of Glis3 in pancreas.", "type": "Expression profiling by array", "pubmed_id": "19805515", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE18172", "order": "none", "update_date": "Apr 06 2011", "subsets": [ { "dataset_id": "GDS3812", "description": "wild type", "sample_id": [ "GSM454291", "GSM454292", "GSM454293" ], "type": "genotype/variation", "id": "GDS3812_1" }, { "dataset_id": "GDS3812", "description": "Glis3zf/zf knockout mutant", "sample_id": [ "GSM454294", "GSM454295", "GSM454296", "GSM454297" ], "type": "genotype/variation", "id": "GDS3812_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3812", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3812.tab", "compression": "gz" } ], [ [ "GDS3813.tab" ], { "title": "Bifidobacterium bifidum and Lactobacillus acidophilus co-stimulation effect on bone-marrow derived dendritic cells", "description": "Analysis of dendritic cells (DC) co-stimulated with B. bifidum and L. acidophilus. DCs are involved in the initiation of both innate and adaptive immunity by responding to environmental microorganisms. Results provide insight into the immune response in DCs elicited by this co-stimulation.", "type": "Expression profiling by array", "pubmed_id": "20548777", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE20302", "order": "none", "update_date": "Jun 11 2012", "subsets": [ { "dataset_id": "GDS3813", "description": "control", "sample_id": [ "GSM508907", "GSM508908", "GSM508909" ], "type": "agent", "id": "GDS3813_1" }, { "dataset_id": "GDS3813", "description": "Lactobacillus NCFM", "sample_id": [ "GSM508910", "GSM508911", "GSM508912" ], "type": "agent", "id": "GDS3813_2" }, { "dataset_id": "GDS3813", "description": "Bifidobacterium Z9", "sample_id": [ "GSM508913", "GSM508914", "GSM508915" ], "type": "agent", "id": "GDS3813_3" }, { "dataset_id": "GDS3813", "description": "NCFM+Z9", "sample_id": [ "GSM508916", "GSM508917", "GSM508918" ], "type": "agent", "id": "GDS3813_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3813", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3813.tab", "compression": "gz" } ], [ [ "GDS3814.tab" ], { "title": "Fetal and adult reticulocytes", "description": "Comparison of reticulocytes from adult peripheral blood and umbilical cord blood. Hemoglobin (Hb) composition switches around the time of birth from fetal Hb to adult Hb. Together with microRNA profiling, results provide insight into the role of microRNAs in fetal-to-adult Hb switching.", "type": "Expression profiling by array", "pubmed_id": "19939273", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE17639", "order": "none", "update_date": "Jun 24 2012", "subsets": [ { "dataset_id": "GDS3814", "description": "adult", "sample_id": [ "GSM440234", "GSM440235", "GSM440236", "GSM440237", "GSM440238", "GSM440239" ], "type": "development stage", "id": "GDS3814_1" }, { "dataset_id": "GDS3814", "description": "fetal", "sample_id": [ "GSM440240", "GSM440241", "GSM440242", "GSM440243", "GSM440244", "GSM440245" ], "type": "development stage", "id": "GDS3814_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3814", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3814.tab", "compression": "gz" } ], [ [ "GDS3815.tab" ], { "title": "Basic helix-loop-helix transcription factor Mesp1 effect on embryonic stem cells in vitro: time course", "description": "Analysis of ESCs bearing a doxycycline(dox)-inducible, Mesp1 transgene and differentiated in the absence or presence of DKK1 (days 0-4), with or without dox (days 2-4). Results provide insight into the early and intermediate effects of transiently forced Mesp1 expression during ESC differentiation.", "type": "Expression profiling by array", "pubmed_id": "18593559", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE5976", "order": "none", "update_date": "Apr 07 2011", "subsets": [ { "dataset_id": "GDS3815", "description": "control", "sample_id": [ "GSM139021", "GSM139025", "GSM139029" ], "type": "growth protocol", "id": "GDS3815_1" }, { "dataset_id": "GDS3815", "description": "DKK1", "sample_id": [ "GSM139023", "GSM139027", "GSM139031" ], "type": "growth protocol", "id": "GDS3815_2" }, { "dataset_id": "GDS3815", "description": "doxycycline", "sample_id": [ "GSM139022", "GSM139026", "GSM139030" ], "type": "growth protocol", "id": "GDS3815_3" }, { "dataset_id": "GDS3815", "description": "DKK1 + doxycycline", "sample_id": [ "GSM139024", "GSM139028", "GSM139032" ], "type": "growth protocol", "id": "GDS3815_4" }, { "dataset_id": "GDS3815", "description": "day 3", "sample_id": [ "GSM139021", "GSM139022", "GSM139023", "GSM139024" ], "type": "time", "id": "GDS3815_5" }, { "dataset_id": "GDS3815", "description": "day 4", "sample_id": [ "GSM139025", "GSM139026", "GSM139027", "GSM139028" ], "type": "time", "id": "GDS3815_6" }, { "dataset_id": "GDS3815", "description": "day 6", "sample_id": [ "GSM139029", "GSM139030", "GSM139031", "GSM139032" ], "type": "time", "id": "GDS3815_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3815", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3815.tab", "compression": "gz" } ], [ [ "GDS3816.tab" ], { "title": "Estrogen effect on bone marrow-derived c-kit+ stem cells and CD44+ stromal cells", "description": "Analysis of bone marrow (BM) c-kit+ stem cells (SCs) and CD44+ stromal cells (StroCs) after exposure to physiological dose of 17b-estradiol. Results provide insight into the role of estrogen in regulating the functional organization of the BM SC niche and into its role in cardiac repair.", "type": "Expression profiling by array", "pubmed_id": "19006456", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE9098", "order": "none", "update_date": "Jun 20 2012", "subsets": [ { "dataset_id": "GDS3816", "description": "c-kit+ stem cells", "sample_id": [ "GSM230342", "GSM230336", "GSM230332", "GSM230341", "GSM230338", "GSM230334" ], "type": "cell type", "id": "GDS3816_1" }, { "dataset_id": "GDS3816", "description": "CD44+ stromal cells", "sample_id": [ "GSM230339", "GSM230335", "GSM230331", "GSM230340", "GSM230337", "GSM230333" ], "type": "cell type", "id": "GDS3816_2" }, { "dataset_id": "GDS3816", "description": "control", "sample_id": [ "GSM230342", "GSM230336", "GSM230332", "GSM230339", "GSM230335", "GSM230331" ], "type": "agent", "id": "GDS3816_3" }, { "dataset_id": "GDS3816", "description": "17\u03b2-estradiol (17\u03b2E)", "sample_id": [ "GSM230341", "GSM230338", "GSM230334", "GSM230340", "GSM230337", "GSM230333" ], "type": "agent", "id": "GDS3816_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3816", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3816.tab", "compression": "gz" } ], [ [ "GDS3818.tab" ], { "title": "Atherosclerotic lesion regression: aorta", "description": "Analysis of Apolipoprotein E-deficient C57BL/6 females fed a high cholesterol diet for 30 wks to induce advanced atherosclerosis, and then treated with adenovirus expressing human apoE3 to regress the atherosclerotic lesions. Results provide insight into molecular basis of atherosclerosis regression", "type": "Expression profiling by array", "pubmed_id": "21804111", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE15914", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3818", "description": "vehicle", "sample_id": [ "GSM399506", "GSM399507", "GSM399508" ], "type": "agent", "id": "GDS3818_1" }, { "dataset_id": "GDS3818", "description": "empty vector", "sample_id": [ "GSM399499", "GSM399497", "GSM399501" ], "type": "agent", "id": "GDS3818_2" }, { "dataset_id": "GDS3818", "description": "human apolipoprotein E3", "sample_id": [ "GSM399502", "GSM399503", "GSM399504" ], "type": "agent", "id": "GDS3818_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3818", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3818.tab", "compression": "gz" } ], [ [ "GDS3819.tab" ], { "title": "Autosomal dominant monocytopenia: polymorphonuclear leukocytes (RNeasy)", "description": "Analysis of polymorphonuclear cells from patients affected with autosomal dominant monocytopenia characterized by mycobacterial, fungal, and viral infections, and frequently myelodysplasia. RNA extracted using RNeasy. Results provide insight into molecular mechanisms underlying this syndrome.", "type": "Expression profiling by array", "pubmed_id": "20040766", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE16020", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3819", "description": "control", "sample_id": [ "GSM400913", "GSM400914", "GSM400915", "GSM400916", "GSM400917", "GSM400918", "GSM400919" ], "type": "disease state", "id": "GDS3819_1" }, { "dataset_id": "GDS3819", "description": "autosomal dominant monocytopenia", "sample_id": [ "GSM400920", "GSM400921", "GSM400922" ], "type": "disease state", "id": "GDS3819_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3819", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3819.tab", "compression": "gz" } ], [ [ "GDS3820.tab" ], { "title": "Autosomal dominant monocytopenia: polymorphonuclear leukocytes (STAT60)", "description": "Analysis of polymorphonuclear cells from patients affected with autosomal dominant monocytopenia characterized by mycobacterial, fungal, and viral infections, and frequently myelodysplasia. RNA extracted using STAT60. Results provide insight into molecular mechanisms underlying this syndrome.", "type": "Expression profiling by array", "pubmed_id": "20040766", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE16020", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3820", "description": "control", "sample_id": [ "GSM400923", "GSM400924", "GSM400925", "GSM400926", "GSM400927" ], "type": "disease state", "id": "GDS3820_1" }, { "dataset_id": "GDS3820", "description": "autosomal dominant monocytopenia", "sample_id": [ "GSM400928", "GSM400929", "GSM400930", "GSM400931", "GSM400932" ], "type": "disease state", "id": "GDS3820_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3820", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3820.tab", "compression": "gz" } ], [ [ "GDS3823.tab" ], { "title": "Auxin effect on seedlings", "description": "Analysis of seedlings treated with auxin only or auxin plus brassinazole (a brassinosteroid (BR) biosynthetic inhibitor). Auxin induces expression of DWARF4. The DWARF4 enzyme catalyzes the rate-determining step in BR biosynthesis. Results provide insight into the role of auxin in BR biosynthesis.", "type": "Expression profiling by array", "pubmed_id": "21284753", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE12964", "order": "none", "update_date": "Aug 11 2011", "subsets": [ { "dataset_id": "GDS3823", "description": "Auxin", "sample_id": [ "GSM325126", "GSM325127", "GSM325128" ], "type": "agent", "id": "GDS3823_1" }, { "dataset_id": "GDS3823", "description": "Auxin and brassinazole", "sample_id": [ "GSM325129", "GSM325130", "GSM325131" ], "type": "agent", "id": "GDS3823_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3823", "version": 1.0, "instances": "6", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3823.tab", "compression": "gz" } ], [ [ "GDS3824.tab" ], { "title": "Pineal gland development", "description": "Analysis of pineal gland across 5 developmental stages (3 larval, 2 adult) during the day and night. Pineal gland is a site of melatonin production, contains photoreceptor cells, and acts as a circadian clock pace maker. Results provide insight into the molecular basis of pineal gland development.", "type": "Expression profiling by array", "pubmed_id": "19504458", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "69", "value_type": "count", "reference_series": "GSE13371", "order": "none", "update_date": "Aug 11 2011", "subsets": [ { "dataset_id": "GDS3824", "description": "3 day old", "sample_id": [ "GSM337572", "GSM337573", "GSM337574", "GSM337575", "GSM337576", "GSM337577", "GSM337578", "GSM337579", "GSM337580", "GSM337581", "GSM337582", "GSM337583", "GSM337584", "GSM337585" ], "type": "age", "id": "GDS3824_1" }, { "dataset_id": "GDS3824", "description": "5 day old", "sample_id": [ "GSM337586", "GSM337587", "GSM337588", "GSM337589", "GSM337590", "GSM337591", "GSM337592", "GSM337593", "GSM337594", "GSM337595", "GSM337596", "GSM337597", "GSM337598", "GSM337599" ], "type": "age", "id": "GDS3824_2" }, { "dataset_id": "GDS3824", "description": "10 day old", "sample_id": [ "GSM337600", "GSM337601", "GSM337602", "GSM337603", "GSM337604", "GSM337605", "GSM337606", "GSM337607", "GSM337608", "GSM337609", "GSM337610", "GSM337611", "GSM337612", "GSM337613", "GSM337614" ], "type": "age", "id": "GDS3824_3" }, { "dataset_id": "GDS3824", "description": "3 month old", "sample_id": [ "GSM337615", "GSM337616", "GSM337617", "GSM337618", "GSM337619", "GSM337620", "GSM337621", "GSM337622", "GSM337623", "GSM337624", "GSM337625", "GSM337626" ], "type": "age", "id": "GDS3824_4" }, { "dataset_id": "GDS3824", "description": "1-2 years old", "sample_id": [ "GSM337627", "GSM337628", "GSM337629", "GSM337630", "GSM337631", "GSM337632", "GSM337633", "GSM337634", "GSM337635", "GSM337636", "GSM337637", "GSM337638", "GSM337639", "GSM337640" ], "type": "age", "id": "GDS3824_5" }, { "dataset_id": "GDS3824", "description": "day", "sample_id": [ "GSM337572", "GSM337573", "GSM337574", "GSM337575", "GSM337576", "GSM337577", "GSM337586", "GSM337587", "GSM337588", "GSM337589", "GSM337590", "GSM337591", "GSM337592", "GSM337593", "GSM337600", "GSM337601", "GSM337602", "GSM337603", "GSM337604", "GSM337605", "GSM337606", "GSM337615", "GSM337616", "GSM337617", "GSM337618", "GSM337619", "GSM337620", "GSM337627", "GSM337628", "GSM337629", "GSM337630", "GSM337631", "GSM337632", "GSM337633" ], "type": "time", "id": "GDS3824_6" }, { "dataset_id": "GDS3824", "description": "night", "sample_id": [ "GSM337578", "GSM337579", "GSM337580", "GSM337581", "GSM337582", "GSM337583", "GSM337584", "GSM337585", "GSM337594", "GSM337595", "GSM337596", "GSM337597", "GSM337598", "GSM337599", "GSM337607", "GSM337608", "GSM337609", "GSM337610", "GSM337611", "GSM337612", "GSM337613", "GSM337614", "GSM337621", "GSM337622", "GSM337623", "GSM337624", "GSM337625", "GSM337626", "GSM337634", "GSM337635", "GSM337636", "GSM337637", "GSM337638", "GSM337639", "GSM337640" ], "type": "time", "id": "GDS3824_7" }, { "dataset_id": "GDS3824", "description": "pineal gland", "sample_id": [ "GSM337594", "GSM337595", "GSM337596", "GSM337597", "GSM337586", "GSM337587", "GSM337588", "GSM337589", "GSM337590", "GSM337621", "GSM337622", "GSM337623", "GSM337615", "GSM337616", "GSM337617", "GSM337578", "GSM337579", "GSM337580", "GSM337581", "GSM337572", "GSM337573", "GSM337574", "GSM337607", "GSM337608", "GSM337609", "GSM337610", "GSM337600", "GSM337601", "GSM337602", "GSM337603", "GSM337634", "GSM337635", "GSM337636", "GSM337637", "GSM337627", "GSM337628", "GSM337629", "GSM337630" ], "type": "tissue", "id": "GDS3824_8" }, { "dataset_id": "GDS3824", "description": "brain", "sample_id": [ "GSM337598", "GSM337599", "GSM337591", "GSM337592", "GSM337593", "GSM337624", "GSM337625", "GSM337626", "GSM337618", "GSM337619", "GSM337620", "GSM337582", "GSM337583", "GSM337584", "GSM337585", "GSM337575", "GSM337576", "GSM337577", "GSM337611", "GSM337612", "GSM337613", "GSM337614", "GSM337604", "GSM337605", "GSM337606", "GSM337638", "GSM337639", "GSM337640", "GSM337631", "GSM337632", "GSM337633" ], "type": "tissue", "id": "GDS3824_9" }, { "dataset_id": "GDS3824", "description": "larval", "sample_id": [ "GSM337572", "GSM337573", "GSM337574", "GSM337575", "GSM337576", "GSM337577", "GSM337578", "GSM337579", "GSM337580", "GSM337581", "GSM337582", "GSM337583", "GSM337584", "GSM337585", "GSM337586", "GSM337587", "GSM337588", "GSM337589", "GSM337590", "GSM337591", "GSM337592", "GSM337593", "GSM337594", "GSM337595", "GSM337596", "GSM337597", "GSM337598", "GSM337599", "GSM337600", "GSM337601", "GSM337602", "GSM337603", "GSM337604", "GSM337605", "GSM337606", "GSM337607", "GSM337608", "GSM337609", "GSM337610", "GSM337611", "GSM337612", "GSM337613", "GSM337614" ], "type": "development stage", "id": "GDS3824_10" }, { "dataset_id": "GDS3824", "description": "adult", "sample_id": [ "GSM337615", "GSM337616", "GSM337617", "GSM337618", "GSM337619", "GSM337620", "GSM337621", "GSM337622", "GSM337623", "GSM337624", "GSM337625", "GSM337626", "GSM337627", "GSM337628", "GSM337629", "GSM337630", "GSM337631", "GSM337632", "GSM337633", "GSM337634", "GSM337635", "GSM337636", "GSM337637", "GSM337638", "GSM337639", "GSM337640" ], "type": "development stage", "id": "GDS3824_11" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS3824", "version": 1.0, "instances": "69", "variables": 13305, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3824.tab", "compression": "gz" } ], [ [ "GDS3825.tab" ], { "title": "SP-C/c-raf transgenic model of lung cancer: dysplasia", "description": "Analysis of dysplastic lung cells and transgenic but morphologically unaltered lung cells, both harvested from SP-C/c-raf transgenics. Normal lung from non-transgenic littermates also examined. Results provide insight into molecular mechanisms underlying an early stage of lung cancer development.", "type": "Expression profiling by array", "pubmed_id": "19529782", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE13963", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3825", "description": "dysplasia", "sample_id": [ "GSM351069", "GSM351065", "GSM351066", "GSM351067", "GSM351068" ], "type": "disease state", "id": "GDS3825_1" }, { "dataset_id": "GDS3825", "description": "control (transgenic, but unchanged)", "sample_id": [ "GSM351064", "GSM351070", "GSM351071", "GSM351072", "GSM351094" ], "type": "disease state", "id": "GDS3825_2" }, { "dataset_id": "GDS3825", "description": "control (non-transgenic)", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "disease state", "id": "GDS3825_3" }, { "dataset_id": "GDS3825", "description": "SPC-c-raf transgenic", "sample_id": [ "GSM351069", "GSM351065", "GSM351066", "GSM351067", "GSM351068", "GSM351064", "GSM351070", "GSM351071", "GSM351072", "GSM351094" ], "type": "genotype/variation", "id": "GDS3825_4" }, { "dataset_id": "GDS3825", "description": "wild type", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "genotype/variation", "id": "GDS3825_5" }, { "dataset_id": "GDS3825", "description": "5 month old", "sample_id": [ "GSM351066", "GSM351067", "GSM351068", "GSM351071", "GSM351072", "GSM351094" ], "type": "age", "id": "GDS3825_6" }, { "dataset_id": "GDS3825", "description": "6 month old", "sample_id": [ "GSM351069", "GSM351065", "GSM351064", "GSM351070" ], "type": "age", "id": "GDS3825_7" }, { "dataset_id": "GDS3825", "description": "7 month old", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "age", "id": "GDS3825_8" }, { "dataset_id": "GDS3825", "description": "male", "sample_id": [ "GSM351069", "GSM351065", "GSM351067", "GSM351068", "GSM351064", "GSM351070", "GSM351072", "GSM351094", "GSM351095", "GSM351144", "GSM351146" ], "type": "gender", "id": "GDS3825_9" }, { "dataset_id": "GDS3825", "description": "female", "sample_id": [ "GSM351066", "GSM351071", "GSM351145", "GSM351147" ], "type": "gender", "id": "GDS3825_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3825", "version": 1.0, "instances": "15", "variables": 26686, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3825.tab", "compression": "gz" } ], [ [ "GDS3826.tab" ], { "title": "SP-C/c-raf transgenic model of lung cancer: adenocarcinomas", "description": "Analysis of lung tumor cells and transgenic but morphologically unaltered lung cells, both harvested from SP-C/c-raf transgenics. Normal lung from non-transgenic littermates also examined. Results provide insight into molecular mechanisms underlying the progression from lung dysplasia to cancer.", "type": "Expression profiling by array", "pubmed_id": "19812696", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE14277", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3826", "description": "tumor", "sample_id": [ "GSM357141", "GSM357142", "GSM357143", "GSM357144", "GSM357145" ], "type": "disease state", "id": "GDS3826_1" }, { "dataset_id": "GDS3826", "description": "control (transgenic, but unchanged)", "sample_id": [ "GSM351064", "GSM351070", "GSM351071", "GSM351072", "GSM351094" ], "type": "disease state", "id": "GDS3826_2" }, { "dataset_id": "GDS3826", "description": "control (non-transgenic)", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "disease state", "id": "GDS3826_3" }, { "dataset_id": "GDS3826", "description": "SPC-c-raf transgenic", "sample_id": [ "GSM357141", "GSM357142", "GSM357143", "GSM357144", "GSM357145", "GSM351064", "GSM351070", "GSM351071", "GSM351072", "GSM351094" ], "type": "genotype/variation", "id": "GDS3826_4" }, { "dataset_id": "GDS3826", "description": "wild type", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "genotype/variation", "id": "GDS3826_5" }, { "dataset_id": "GDS3826", "description": "5 month old", "sample_id": [ "GSM351071", "GSM351072", "GSM351094" ], "type": "age", "id": "GDS3826_6" }, { "dataset_id": "GDS3826", "description": "6 month old", "sample_id": [ "GSM351064", "GSM351070" ], "type": "age", "id": "GDS3826_7" }, { "dataset_id": "GDS3826", "description": "7 month old", "sample_id": [ "GSM351095", "GSM351144", "GSM351145", "GSM351146", "GSM351147" ], "type": "age", "id": "GDS3826_8" }, { "dataset_id": "GDS3826", "description": "10 month old", "sample_id": [ "GSM357141", "GSM357143" ], "type": "age", "id": "GDS3826_9" }, { "dataset_id": "GDS3826", "description": "12 month old", "sample_id": [ "GSM357144" ], "type": "age", "id": "GDS3826_10" }, { "dataset_id": "GDS3826", "description": "13 month old", "sample_id": [ "GSM357142" ], "type": "age", "id": "GDS3826_11" }, { "dataset_id": "GDS3826", "description": "14 month old", "sample_id": [ "GSM357145" ], "type": "age", "id": "GDS3826_12" }, { "dataset_id": "GDS3826", "description": "male", "sample_id": [ "GSM357141", "GSM357142", "GSM357145", "GSM351064", "GSM351070", "GSM351072", "GSM351094", "GSM351095", "GSM351144", "GSM351146" ], "type": "gender", "id": "GDS3826_13" }, { "dataset_id": "GDS3826", "description": "female", "sample_id": [ "GSM357143", "GSM357144", "GSM351071", "GSM351145", "GSM351147" ], "type": "gender", "id": "GDS3826_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3826", "version": 1.0, "instances": "15", "variables": 26686, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3826.tab", "compression": "gz" } ], [ [ "GDS3827.tab" ], { "title": "Pilocarpine model of epilepsy: hippocampus", "description": "Analysis of hippocampal cells from Wistar adult males treated with pilocarpine during the course of epileptogenesis: 3 days post-status epilepticus (D3), D7, and immediately after the first spontaneous seizure (Chronic). Results provide insight into molecular mechanisms involved in epileptogenesis.", "type": "Expression profiling by array", "pubmed_id": "20377889", "platform": "GPL2896", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "36736", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE14763", "order": "none", "update_date": "Aug 17 2011", "subsets": [ { "dataset_id": "GDS3827", "description": "3 days post-SE", "sample_id": [ "GSM367527", "GSM367528", "GSM367531", "GSM367532", "GSM367534", "GSM367718" ], "type": "time", "id": "GDS3827_1" }, { "dataset_id": "GDS3827", "description": "7 days post-SE", "sample_id": [ "GSM367536", "GSM367538", "GSM367539", "GSM367540", "GSM367541", "GSM367719" ], "type": "time", "id": "GDS3827_2" }, { "dataset_id": "GDS3827", "description": "immediate", "sample_id": [ "GSM367545", "GSM367546", "GSM367548", "GSM367549", "GSM367551", "GSM367721" ], "type": "time", "id": "GDS3827_3" }, { "dataset_id": "GDS3827", "description": "pilocarpine", "sample_id": [ "GSM367527", "GSM367528", "GSM367531", "GSM367532", "GSM367534", "GSM367536", "GSM367538", "GSM367539", "GSM367540", "GSM367541", "GSM367545", "GSM367546", "GSM367548", "GSM367549", "GSM367551" ], "type": "agent", "id": "GDS3827_4" }, { "dataset_id": "GDS3827", "description": "saline", "sample_id": [ "GSM367718", "GSM367719", "GSM367721" ], "type": "agent", "id": "GDS3827_5" } ], "taxid": "10116", "genes": 28629, "aggregation_function": "mean", "name": "GDS3827", "version": 1.0, "instances": "18", "variables": 28632, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3827.tab", "compression": "gz" } ], [ [ "GDS3829.tab" ], { "title": "Fludarabine, cyclophosphamide, and rituximab chemoimmunotherapy effect on chronic lymphocytic leukemia", "description": "Analysis of CD19+ selected B cells from CLL patients before and after chemoimmunotherapy regimens of rituximab (R), fludarabine and cyclophosphamide (FC), or RFC. Results provide insight into the molecular mechanisms underlying the beneficial effects of the chemoimmunotherapy regimens.", "type": "Expression profiling by array", "pubmed_id": "20966934", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE15490", "order": "none", "update_date": "May 22 2012", "subsets": [ { "dataset_id": "GDS3829", "description": "rituximab", "sample_id": [ "GSM388593", "GSM388594", "GSM388595", "GSM388596", "GSM388597", "GSM388598", "GSM388599", "GSM388600", "GSM388601", "GSM388602" ], "type": "agent", "id": "GDS3829_1" }, { "dataset_id": "GDS3829", "description": "fludarabine, cyclophosphamide", "sample_id": [ "GSM388623", "GSM388624", "GSM388625", "GSM388626", "GSM388627", "GSM388628", "GSM388629", "GSM388630", "GSM388631", "GSM388632" ], "type": "agent", "id": "GDS3829_2" }, { "dataset_id": "GDS3829", "description": "rituximab, fludarabine, cyclophosphamide", "sample_id": [ "GSM388603", "GSM388604", "GSM388605", "GSM388606", "GSM388607", "GSM388608", "GSM388609", "GSM388610", "GSM388611", "GSM388612" ], "type": "agent", "id": "GDS3829_3" }, { "dataset_id": "GDS3829", "description": "control (before rituximab)", "sample_id": [ "GSM388583", "GSM388584", "GSM388585", "GSM388586", "GSM388587", "GSM388588", "GSM388589", "GSM388590", "GSM388591", "GSM388592" ], "type": "agent", "id": "GDS3829_4" }, { "dataset_id": "GDS3829", "description": "control (before fludarabine, cyclophosphamide)", "sample_id": [ "GSM388613", "GSM388614", "GSM388615", "GSM388616", "GSM388617", "GSM388618", "GSM388619", "GSM388620", "GSM388621", "GSM388622" ], "type": "agent", "id": "GDS3829_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3829", "version": 1.0, "instances": "50", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3829.tab", "compression": "gz" } ], [ [ "GDS3830.tab" ], { "title": "Williams-Beuren Syndrome: fibroblast cell lines", "description": "Analysis of primary skin fibroblasts of 8 Williams-Beuren Syndrome (WBS) and 9 control Caucasian females aged 3 to 8 years. WBS is a neurodevelopmental disorder associated with a microdeletion within the 7q11.23 chromosomal band. Results provide insight into the molecular basis of the WBS phenotype.", "type": "Expression profiling by array", "pubmed_id": "21304579", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE16715", "order": "none", "update_date": "Aug 26 2011", "subsets": [ { "dataset_id": "GDS3830", "description": "control", "sample_id": [ "GSM418744", "GSM418745", "GSM418746", "GSM418747", "GSM418748", "GSM418749", "GSM418750", "GSM418751", "GSM418752" ], "type": "disease state", "id": "GDS3830_1" }, { "dataset_id": "GDS3830", "description": "WBS", "sample_id": [ "GSM418753", "GSM418754", "GSM418755", "GSM418756", "GSM418757", "GSM418758", "GSM418759", "GSM418760" ], "type": "disease state", "id": "GDS3830_2" }, { "dataset_id": "GDS3830", "description": "3 years", "sample_id": [ "GSM418756", "GSM418759", "GSM418755", "GSM418744", "GSM418748", "GSM418752" ], "type": "age", "id": "GDS3830_3" }, { "dataset_id": "GDS3830", "description": "4 years", "sample_id": [ "GSM418757", "GSM418758", "GSM418749" ], "type": "age", "id": "GDS3830_4" }, { "dataset_id": "GDS3830", "description": "5 years", "sample_id": [ "GSM418750", "GSM418751", "GSM418745" ], "type": "age", "id": "GDS3830_5" }, { "dataset_id": "GDS3830", "description": "7 years", "sample_id": [ "GSM418760", "GSM418754", "GSM418747" ], "type": "age", "id": "GDS3830_6" }, { "dataset_id": "GDS3830", "description": "8 years", "sample_id": [ "GSM418753", "GSM418746" ], "type": "age", "id": "GDS3830_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3830", "version": 1.0, "instances": "17", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3830.tab", "compression": "gz" } ], [ [ "GDS3831.tab" ], { "title": "Supplementary dietary calcium effect on small-intestinal mucosal cells", "description": "Analysis of small intestine (proximal, middle, distal) mucosal cells of C57BL/6J males fed high-fat diets differing in Ca concentration. High-Ca (150mmol/kg) stimulates fecal fat and bile acid excretion. Results provide insight into role of dietary Ca on development of obesity or insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "21205428", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE18581", "order": "none", "update_date": "Aug 26 2011", "subsets": [ { "dataset_id": "GDS3831", "description": "calcium, 50 mmol/kg", "sample_id": [ "GSM462209", "GSM462208", "GSM462207" ], "type": "protocol", "id": "GDS3831_1" }, { "dataset_id": "GDS3831", "description": "calcium, 150 mmol/kg", "sample_id": [ "GSM213057", "GSM213051", "GSM213045" ], "type": "protocol", "id": "GDS3831_2" }, { "dataset_id": "GDS3831", "description": "proximal, small intestine", "sample_id": [ "GSM213045", "GSM462207" ], "type": "tissue", "id": "GDS3831_3" }, { "dataset_id": "GDS3831", "description": "middle, small intestine", "sample_id": [ "GSM213051", "GSM462208" ], "type": "tissue", "id": "GDS3831_4" }, { "dataset_id": "GDS3831", "description": "distal, small intestine", "sample_id": [ "GSM213057", "GSM462209" ], "type": "tissue", "id": "GDS3831_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3831", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3831.tab", "compression": "gz" } ], [ [ "GDS3832.tab" ], { "title": "Complement protein C1q effect on immature neurons", "description": "Analysis of primary cortical neurons stimulated with C1q. In vitro, C1q, in the absence of other complement proteins, improves neuronal viability, neurite outgrowth and prevents \u03b2-amyloid-induced neuronal death. Results provide insight into the molecular basis of the neuroprotective role of C1q.", "type": "Expression profiling by array", "pubmed_id": "21368058", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE18860", "order": "none", "update_date": "Aug 30 2011", "subsets": [ { "dataset_id": "GDS3832", "description": "C1q", "sample_id": [ "GSM467495", "GSM467496", "GSM467497" ], "type": "agent", "id": "GDS3832_1" }, { "dataset_id": "GDS3832", "description": "control, untreated", "sample_id": [ "GSM467492", "GSM467493", "GSM467494" ], "type": "agent", "id": "GDS3832_2" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS3832", "version": 1.0, "instances": "6", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3832.tab", "compression": "gz" } ], [ [ "GDS3833.tab" ], { "title": "Metastatic tumor growth in gestating mice: lung and liver", "description": "Analysis of lung and liver of 16-day pregnant and virgin NOD/SCID littermates. Enhanced metastatic tumor growth is observed in gestant mice regardless of injected tumor cell type. Results provide insight into the molecular mechanisms underlying permissiveness for tumor metastasis during gestation.", "type": "Expression profiling by array", "pubmed_id": "21646719", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE18907", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3833", "description": "lung", "sample_id": [ "GSM468530", "GSM468529", "GSM468528", "GSM468533", "GSM468532", "GSM468531" ], "type": "tissue", "id": "GDS3833_1" }, { "dataset_id": "GDS3833", "description": "liver", "sample_id": [ "GSM468536", "GSM468535", "GSM468534", "GSM468539", "GSM468538", "GSM468537" ], "type": "tissue", "id": "GDS3833_2" }, { "dataset_id": "GDS3833", "description": "virgin", "sample_id": [ "GSM468530", "GSM468529", "GSM468528", "GSM468536", "GSM468535", "GSM468534" ], "type": "development stage", "id": "GDS3833_3" }, { "dataset_id": "GDS3833", "description": "pregnant", "sample_id": [ "GSM468533", "GSM468532", "GSM468531", "GSM468539", "GSM468538", "GSM468537" ], "type": "development stage", "id": "GDS3833_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3833", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3833.tab", "compression": "gz" } ], [ [ "GDS3834.tab" ], { "title": "Multiple normal tissues", "description": "Analysis of 42 normal tissues. Housekeeping genes (HKG) are constitutively expressed in all tissues; tissue-enriched genes (TEG) are more highly expressed in a single tissue type than in others. Results provide insight into mechanisms by which cells maintain basic and tissue-specific functions.", "type": "Expression profiling by array", "pubmed_id": "19534766", "platform": "GPL8217", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18780", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "42", "value_type": "log10 ratio", "reference_series": "GSE14938", "order": "none", "update_date": "Sep 02 2011", "subsets": [ { "dataset_id": "GDS3834", "description": "Adipose", "sample_id": [ "GSM373223" ], "type": "tissue", "id": "GDS3834_1" }, { "dataset_id": "GDS3834", "description": "Adrenal gland", "sample_id": [ "GSM373224" ], "type": "tissue", "id": "GDS3834_2" }, { "dataset_id": "GDS3834", "description": "Bladder", "sample_id": [ "GSM373225" ], "type": "tissue", "id": "GDS3834_3" }, { "dataset_id": "GDS3834", "description": "Bone marrow", "sample_id": [ "GSM373226" ], "type": "tissue", "id": "GDS3834_4" }, { "dataset_id": "GDS3834", "description": "Brain", "sample_id": [ "GSM373227" ], "type": "tissue", "id": "GDS3834_5" }, { "dataset_id": "GDS3834", "description": "Cerebellum", "sample_id": [ "GSM373228" ], "type": "tissue", "id": "GDS3834_6" }, { "dataset_id": "GDS3834", "description": "Cerebral cortex", "sample_id": [ "GSM373229" ], "type": "tissue", "id": "GDS3834_7" }, { "dataset_id": "GDS3834", "description": "Fetal brain", "sample_id": [ "GSM373230" ], "type": "tissue", "id": "GDS3834_8" }, { "dataset_id": "GDS3834", "description": "Hippocampus", "sample_id": [ "GSM373231" ], "type": "tissue", "id": "GDS3834_9" }, { "dataset_id": "GDS3834", "description": "Thalamus", "sample_id": [ "GSM373232" ], "type": "tissue", "id": "GDS3834_10" }, { "dataset_id": "GDS3834", "description": "CD4+ T cells", "sample_id": [ "GSM373233" ], "type": "tissue", "id": "GDS3834_11" }, { "dataset_id": "GDS3834", "description": "CD8+ T cells", "sample_id": [ "GSM373234" ], "type": "tissue", "id": "GDS3834_12" }, { "dataset_id": "GDS3834", "description": "Cervix", "sample_id": [ "GSM373235" ], "type": "tissue", "id": "GDS3834_13" }, { "dataset_id": "GDS3834", "description": "Colon", "sample_id": [ "GSM373236" ], "type": "tissue", "id": "GDS3834_14" }, { "dataset_id": "GDS3834", "description": "Epididymis", "sample_id": [ "GSM373237" ], "type": "tissue", "id": "GDS3834_15" }, { "dataset_id": "GDS3834", "description": "Heart", "sample_id": [ "GSM373238" ], "type": "tissue", "id": "GDS3834_16" }, { "dataset_id": "GDS3834", "description": "Kidney", "sample_id": [ "GSM373239" ], "type": "tissue", "id": "GDS3834_17" }, { "dataset_id": "GDS3834", "description": "Fetal kidney", "sample_id": [ "GSM373240" ], "type": "tissue", "id": "GDS3834_18" }, { "dataset_id": "GDS3834", "description": "Liver", "sample_id": [ "GSM373241" ], "type": "tissue", "id": "GDS3834_19" }, { "dataset_id": "GDS3834", "description": "Fetal liver", "sample_id": [ "GSM373242" ], "type": "tissue", "id": "GDS3834_20" }, { "dataset_id": "GDS3834", "description": "Lung", "sample_id": [ "GSM373243" ], "type": "tissue", "id": "GDS3834_21" }, { "dataset_id": "GDS3834", "description": "Fetal lung", "sample_id": [ "GSM373244" ], "type": "tissue", "id": "GDS3834_22" }, { "dataset_id": "GDS3834", "description": "Lymph node", "sample_id": [ "GSM373245" ], "type": "tissue", "id": "GDS3834_23" }, { "dataset_id": "GDS3834", "description": "Mammary gland", "sample_id": [ "GSM373246" ], "type": "tissue", "id": "GDS3834_24" }, { "dataset_id": "GDS3834", "description": "Sketetal muscle", "sample_id": [ "GSM373247" ], "type": "tissue", "id": "GDS3834_25" }, { "dataset_id": "GDS3834", "description": "Ovary", "sample_id": [ "GSM373248" ], "type": "tissue", "id": "GDS3834_26" }, { "dataset_id": "GDS3834", "description": "Pituitary gland", "sample_id": [ "GSM373249" ], "type": "tissue", "id": "GDS3834_27" }, { "dataset_id": "GDS3834", "description": "Placenta", "sample_id": [ "GSM373250" ], "type": "tissue", "id": "GDS3834_28" }, { "dataset_id": "GDS3834", "description": "Prostate", "sample_id": [ "GSM373251" ], "type": "tissue", "id": "GDS3834_29" }, { "dataset_id": "GDS3834", "description": "Retinal", "sample_id": [ "GSM373252" ], "type": "tissue", "id": "GDS3834_30" }, { "dataset_id": "GDS3834", "description": "Salivary gland", "sample_id": [ "GSM373253" ], "type": "tissue", "id": "GDS3834_31" }, { "dataset_id": "GDS3834", "description": "Skin", "sample_id": [ "GSM373254" ], "type": "tissue", "id": "GDS3834_32" }, { "dataset_id": "GDS3834", "description": "Duodenum", "sample_id": [ "GSM373255" ], "type": "tissue", "id": "GDS3834_33" }, { "dataset_id": "GDS3834", "description": "Ileum", "sample_id": [ "GSM373256" ], "type": "tissue", "id": "GDS3834_34" }, { "dataset_id": "GDS3834", "description": "Jejunum", "sample_id": [ "GSM373257" ], "type": "tissue", "id": "GDS3834_35" }, { "dataset_id": "GDS3834", "description": "Spinal cord", "sample_id": [ "GSM373258" ], "type": "tissue", "id": "GDS3834_36" }, { "dataset_id": "GDS3834", "description": "Spleen", "sample_id": [ "GSM373259" ], "type": "tissue", "id": "GDS3834_37" }, { "dataset_id": "GDS3834", "description": "Stomach", "sample_id": [ "GSM373260" ], "type": "tissue", "id": "GDS3834_38" }, { "dataset_id": "GDS3834", "description": "Testis", "sample_id": [ "GSM373261" ], "type": "tissue", "id": "GDS3834_39" }, { "dataset_id": "GDS3834", "description": "Thymus", "sample_id": [ "GSM373262" ], "type": "tissue", "id": "GDS3834_40" }, { "dataset_id": "GDS3834", "description": "Thyroid", "sample_id": [ "GSM373263" ], "type": "tissue", "id": "GDS3834_41" }, { "dataset_id": "GDS3834", "description": "Trachea", "sample_id": [ "GSM373264" ], "type": "tissue", "id": "GDS3834_42" } ], "taxid": "9606", "genes": 18712, "aggregation_function": "mean", "name": "GDS3834", "version": 1.0, "instances": "42", "variables": 18714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3834.tab", "compression": "gz" } ], [ [ "GDS3836.tab" ], { "title": "Multistep pancreatic carcinogenesis: epithelial cells", "description": "Analysis of epithelial neoplastic cells at 3 stages of tumor development and normal cells from the main pancreatic duct. Anti-tumor immunity changes over the course of tumor progression. Results provide insight into how and when effective immune surveillance is overcome during cancer progression.", "type": "Expression profiling by array", "pubmed_id": "20955708", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE19650", "order": "none", "update_date": "Aug 31 2011", "subsets": [ { "dataset_id": "GDS3836", "description": "control, normal", "sample_id": [ "GSM490138", "GSM490139", "GSM490140", "GSM490141", "GSM490142", "GSM490143", "GSM490144" ], "type": "disease state", "id": "GDS3836_1" }, { "dataset_id": "GDS3836", "description": "intraductal papillary-mucinous adenoma (IPMA)", "sample_id": [ "GSM490145", "GSM490146", "GSM490147", "GSM490148", "GSM490149", "GSM490150" ], "type": "disease state", "id": "GDS3836_2" }, { "dataset_id": "GDS3836", "description": "intraductal papillary-mucinous carcinoma (IPMC)", "sample_id": [ "GSM490151", "GSM490152", "GSM490153", "GSM490154", "GSM490155", "GSM490156" ], "type": "disease state", "id": "GDS3836_3" }, { "dataset_id": "GDS3836", "description": "invasive cancer of intraductal papillary-mucinous neoplasm (IPMN)", "sample_id": [ "GSM490157", "GSM490158", "GSM490159" ], "type": "disease state", "id": "GDS3836_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3836", "version": 1.0, "instances": "22", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3836.tab", "compression": "gz" } ], [ [ "GDS3837.tab" ], { "title": "Non-small cell lung carcinoma in female nonsmokers", "description": "Analysis of paired tumor and adjacent normal lung tissue specimens obtained from nonsmoking female non-small cell lung carcinoma (NSCLC) patients in Taiwan. Results provide insight into potential prognostic biomarkers and therapeutic targets for NSCLC.", "type": "Expression profiling by array", "pubmed_id": "20802022", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "120", "value_type": "transformed count", "reference_series": "GSE19804", "order": "none", "update_date": "Sep 03 2011", "subsets": [ { "dataset_id": "GDS3837", "description": "lung cancer", "sample_id": [ "GSM494556", "GSM494557", "GSM494558", "GSM494559", "GSM494560", "GSM494561", "GSM494562", "GSM494563", "GSM494564", "GSM494565", "GSM494566", "GSM494567", "GSM494568", "GSM494569", "GSM494570", "GSM494571", "GSM494572", "GSM494573", "GSM494574", "GSM494575", "GSM494576", "GSM494577", "GSM494578", "GSM494579", "GSM494580", "GSM494581", "GSM494582", "GSM494583", "GSM494584", "GSM494585", "GSM494586", "GSM494587", "GSM494588", "GSM494589", "GSM494590", "GSM494591", "GSM494592", "GSM494593", "GSM494594", "GSM494595", "GSM494596", "GSM494597", "GSM494598", "GSM494599", "GSM494600", "GSM494601", "GSM494602", "GSM494603", "GSM494604", "GSM494605", "GSM494606", "GSM494607", "GSM494608", "GSM494609", "GSM494610", "GSM494611", "GSM494612", "GSM494613", "GSM494614", "GSM494615" ], "type": "disease state", "id": "GDS3837_1" }, { "dataset_id": "GDS3837", "description": "control", "sample_id": [ "GSM494616", "GSM494617", "GSM494618", "GSM494619", "GSM494620", "GSM494621", "GSM494622", "GSM494623", "GSM494624", "GSM494625", "GSM494626", "GSM494627", "GSM494628", "GSM494629", "GSM494630", "GSM494631", "GSM494632", "GSM494633", "GSM494634", "GSM494635", "GSM494636", "GSM494637", "GSM494638", "GSM494639", "GSM494640", "GSM494641", "GSM494642", "GSM494643", "GSM494644", "GSM494645", "GSM494646", "GSM494647", "GSM494648", "GSM494649", "GSM494650", "GSM494651", "GSM494652", "GSM494653", 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Genomic instability plays an important role in ESCC. Gene expression results, together with DNA copy number neutral loss of heterozygosity (CNNLOH) status, provide insight into ESCC development.", "type": "Expression profiling by array", "pubmed_id": "20955586", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE20347", "order": "none", "update_date": "Sep 04 2011", "subsets": [ { "dataset_id": "GDS3838", "description": "control", "sample_id": [ "GSM509787", "GSM509788", "GSM509789", "GSM509790", "GSM509791", "GSM509792", "GSM509793", "GSM509794", "GSM509795", "GSM509796", "GSM509797", "GSM509798", "GSM509799", "GSM509800", "GSM509801", "GSM509802", "GSM509803" ], "type": "disease state", "id": "GDS3838_1" }, { "dataset_id": "GDS3838", "description": "ESCC", "sample_id": [ "GSM509804", "GSM509805", "GSM509806", "GSM509807", "GSM509808", "GSM509809", "GSM509810", "GSM509811", "GSM509812", "GSM509813", "GSM509814", "GSM509815", "GSM509816", "GSM509817", "GSM509818", "GSM509819", "GSM509820" ], "type": "disease state", "id": "GDS3838_2" }, { "dataset_id": "GDS3838", "description": "E1507", "sample_id": [ "GSM509787", "GSM509804" ], "type": "individual", "id": "GDS3838_3" }, { "dataset_id": "GDS3838", "description": "E1520", "sample_id": [ "GSM509788", "GSM509805" ], "type": "individual", "id": "GDS3838_4" }, { "dataset_id": "GDS3838", "description": "E1521", "sample_id": [ "GSM509789", "GSM509806" ], "type": "individual", "id": "GDS3838_5" }, { "dataset_id": "GDS3838", "description": "E1532", "sample_id": [ "GSM509790", "GSM509807" ], "type": "individual", "id": "GDS3838_6" }, { "dataset_id": "GDS3838", "description": "E1535", "sample_id": [ "GSM509791", "GSM509808" ], "type": "individual", "id": "GDS3838_7" }, { "dataset_id": "GDS3838", "description": "E1542", "sample_id": [ "GSM509792", "GSM509809" ], "type": "individual", "id": "GDS3838_8" }, { "dataset_id": "GDS3838", "description": "E1546", "sample_id": [ "GSM509793", "GSM509810" ], "type": "individual", "id": "GDS3838_9" }, { "dataset_id": "GDS3838", "description": "E1566", "sample_id": [ "GSM509794", "GSM509811" ], "type": "individual", "id": "GDS3838_10" }, { "dataset_id": "GDS3838", "description": "E1584", "sample_id": [ "GSM509795", "GSM509812" ], "type": "individual", "id": "GDS3838_11" }, { "dataset_id": "GDS3838", "description": "E1589", "sample_id": [ "GSM509796", "GSM509813" ], "type": "individual", "id": "GDS3838_12" }, { "dataset_id": "GDS3838", "description": "E1603", "sample_id": [ "GSM509797", "GSM509814" ], "type": "individual", "id": "GDS3838_13" }, { "dataset_id": "GDS3838", "description": "E1610", "sample_id": [ "GSM509798", "GSM509815" ], "type": "individual", "id": "GDS3838_14" }, { "dataset_id": "GDS3838", "description": "E1614", "sample_id": [ "GSM509799", "GSM509816" ], "type": "individual", "id": "GDS3838_15" }, { "dataset_id": "GDS3838", "description": "E1635", "sample_id": [ "GSM509800", "GSM509817" ], "type": "individual", "id": "GDS3838_16" }, { "dataset_id": "GDS3838", "description": "E1709", "sample_id": [ "GSM509801", "GSM509818" ], "type": "individual", "id": "GDS3838_17" }, { "dataset_id": "GDS3838", "description": "E1796", "sample_id": [ "GSM509802", "GSM509819" ], "type": "individual", "id": "GDS3838_18" }, { "dataset_id": "GDS3838", "description": "E2644", "sample_id": [ "GSM509803", "GSM509820" ], "type": "individual", "id": "GDS3838_19" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3838", "version": 1.0, "instances": "34", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3838.tab", "compression": "gz" } ], [ [ "GDS3839.tab" ], { "title": "Acute myelogenous leukemia stem cells", "description": "Analysis of acute myelogenous leukemia (AML) leukemia stem cells (LSC) induced either by Hoxa9/Meis1a oncogenes or MLL-AF9 oncoprotein. LSC self-renewal pathway in myeloid cells is central to AML development. Results provide insight into the molecular mechanisms underlying development of LSC in AML.", "type": "Expression profiling by array", "pubmed_id": [ "20339075", "25293777" ], "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE20377", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3839", "description": "CMP", "sample_id": [ "GSM510380", "GSM510381", "GSM510382" ], "type": "cell type", "id": "GDS3839_1" }, { "dataset_id": "GDS3839", "description": "HSC", "sample_id": [ "GSM510377", "GSM510378", "GSM510379" ], "type": "cell type", "id": "GDS3839_2" }, { "dataset_id": "GDS3839", "description": "GMP", "sample_id": [ "GSM510383", "GSM510384", "GSM510385" ], "type": "cell type", "id": "GDS3839_3" }, { "dataset_id": "GDS3839", "description": "GMP-MLLAF9", "sample_id": [ "GSM510386", "GSM510387", "GSM510388" ], "type": "cell type", "id": "GDS3839_4" }, { "dataset_id": "GDS3839", "description": "KLS-HOXA9/M", "sample_id": [ "GSM510389", "GSM510390", "GSM510391" ], "type": "cell type", "id": "GDS3839_5" }, { "dataset_id": "GDS3839", "description": "normal", "sample_id": [ "GSM510377", "GSM510378", "GSM510379", "GSM510380", "GSM510381", "GSM510382", "GSM510383", "GSM510384", "GSM510385" ], "type": "disease state", "id": "GDS3839_6" }, { "dataset_id": "GDS3839", "description": "acute myelogenous leukemia", "sample_id": [ "GSM510386", "GSM510387", "GSM510388", "GSM510389", "GSM510390", "GSM510391" ], "type": "disease state", "id": "GDS3839_7" }, { "dataset_id": "GDS3839", "description": "Lin- Sca1+ CD117+", "sample_id": [ "GSM510377", "GSM510378", "GSM510379" ], "type": "cell line", "id": "GDS3839_8" }, { "dataset_id": "GDS3839", "description": "Lin- Sca1- CD117+ CD34+/low CD16/32-low", "sample_id": [ "GSM510380", "GSM510381", "GSM510382" ], "type": "cell line", "id": "GDS3839_9" }, { "dataset_id": "GDS3839", "description": "Lin- Sca1- CD117+ CD34+ CD16/32+", "sample_id": [ "GSM510383", "GSM510384", "GSM510385" ], "type": "cell line", "id": "GDS3839_10" }, { "dataset_id": "GDS3839", "description": "Lin- Sca1- CD117+ CD34+/low CD16/32-high", "sample_id": [ "GSM510386", "GSM510387", "GSM510388", "GSM510389", "GSM510390", "GSM510391" ], "type": "cell line", "id": "GDS3839_11" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3839", "version": 1.0, "instances": "15", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3839.tab", "compression": "gz" } ], [ [ "GDS384.tab" ], { "title": "Congenital heart disease - E12.5 (Mu11K-A)", "description": "Examination of whole heart of embryonic day 12.5 Csx/Nkx2.5 heterozygous and homozygous embryos to identify downstream target genes and affected pathways of Nkx2.5. Nkx2.5 is a cardiogenic marker with critical function in cardiac differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE528", "order": "none", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS384", "description": "wildtype", "sample_id": [ "GSM7773", "GSM7774", "GSM7775", "GSM7776", "GSM7777" ], "type": "strain", "id": "GDS384_1" }, { "dataset_id": "GDS384", "description": "Csx/Nkx2.5 heterozygous", "sample_id": [ "GSM7760", "GSM7761", "GSM7762", "GSM7763" ], "type": "strain", "id": "GDS384_2" }, { "dataset_id": "GDS384", "description": "Csx/Nkx2.5 homozygous", "sample_id": [ "GSM7768", "GSM7770", "GSM7771", "GSM7772" ], "type": "strain", "id": "GDS384_3" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS384", "version": 1.0, "instances": "13", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS384.tab", "compression": "gz" } ], [ [ "GDS3840.tab" ], { "title": "Retinoic acid effect on CD4+ T cells from spleen/lymph nodes", "description": "Analysis of CD4+ T cells pooled from spleen and mesenteric/peripheral lymph nodes and cultured with exogenous retinoic acid (RA). Integrins are required for T cell migration to mucosal tissues. Results provide insight into the role of RA in the regulation of mucosal integrin expression in T cells.", "type": "Expression profiling by array", "pubmed_id": "20664575", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE20500", "order": "none", "update_date": "Sep 07 2011", "subsets": [ { "dataset_id": "GDS3840", "description": "Control", "sample_id": [ "GSM515084", "GSM515124" ], "type": "agent", "id": "GDS3840_1" }, { "dataset_id": "GDS3840", "description": "Ro41-5253", "sample_id": [ "GSM515127", "GSM515128" ], "type": "agent", "id": "GDS3840_2" }, { "dataset_id": "GDS3840", "description": "retinoic acid", "sample_id": [ "GSM515125", "GSM515126" ], "type": "agent", "id": "GDS3840_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3840", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3840.tab", "compression": "gz" } ], [ [ "GDS3841.tab" ], { "title": "Lean and overweight-obese polycystic ovary syndrome patients: cultured cumulus cells", "description": "Analysis of cumulus cells from lean and overweight-obese polycystic ovary syndrome (PCOS) patients undergoing in vitro fertilization (IVF). PCOS is a heterogeneous endocrinopathy in women of reproductive age, mostly associated with ovulation failure. Results provide insight into PCOS pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "19141487", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE10946", "order": "none", "update_date": "Aug 25 2011", "subsets": [ { "dataset_id": "GDS3841", "description": "Control, non-polycystic ovary syndrome", "sample_id": [ "GSM277448", "GSM277447", "GSM277446", "GSM277445", "GSM277444", "GSM277443", "GSM277442", "GSM277441", "GSM277440", "GSM277439", "GSM277438" ], "type": "disease state", "id": "GDS3841_1" }, { "dataset_id": "GDS3841", "description": "Polycystic ovary syndrome", "sample_id": [ "GSM277460", "GSM277459", "GSM277458", "GSM277457", "GSM277456", "GSM277455", "GSM277454", "GSM277453", "GSM277452", "GSM277451", "GSM277450", "GSM277449" ], "type": "disease state", "id": "GDS3841_2" }, { "dataset_id": "GDS3841", "description": "Lean", "sample_id": [ "GSM277449", "GSM277450", "GSM277451", "GSM277452", "GSM277453", "GSM277438", "GSM277439", "GSM277440", "GSM277441", "GSM277442", "GSM277443" ], "type": "other", "id": "GDS3841_3" }, { "dataset_id": "GDS3841", "description": "Obese", "sample_id": [ "GSM277454", "GSM277455", "GSM277456", "GSM277457", "GSM277458", "GSM277459", "GSM277460", "GSM277444", "GSM277445", "GSM277446", "GSM277447", "GSM277448" ], "type": "other", "id": "GDS3841_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3841", "version": 1.0, "instances": "23", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3841.tab", "compression": "gz" } ], [ [ "GDS3842.tab" ], { "title": "Transcription factor-induced pluripotent stem cells", "description": "Analysis of induced pluripotent stem cells (iPSC) and their parental somatic cells (SC) from amniotic mesodermal (AM), placental artery endothelial (PAE), uterine endometrium (UtE), and MRC sources. Results identify potential candidates for linkage between inner and outer cellular states in iPSCs.", "type": "Expression profiling by array", "pubmed_id": [ "21471226", "21637780", "21689476" ], "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "count", "reference_series": "GSE20750", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3842", "description": "somatic cell", "sample_id": [ "GSM520689", "GSM520690", "GSM520691", "GSM520665", "GSM520666", "GSM520667", "GSM520704", "GSM520705", "GSM520711", "GSM520692", "GSM520693", "GSM520694" ], "type": "cell type", "id": "GDS3842_1" }, { "dataset_id": "GDS3842", "description": "induced pluripotent stem cell (iPSC)", "sample_id": [ "GSM520681", "GSM520682", "GSM520680", "GSM520674", "GSM520675", "GSM520676", "GSM520677", "GSM520678", "GSM520679", "GSM520683", "GSM520684", "GSM520685", "GSM520708", "GSM520706", "GSM520707", "GSM520671", "GSM520672", "GSM520673", "GSM520686", "GSM520687", "GSM520688", "GSM520668", "GSM520669", "GSM520670", "GSM520713", "GSM520714", "GSM520715", "GSM520695", "GSM520696", "GSM520697", "GSM520709", "GSM520710", "GSM520712", "GSM520698", "GSM520699", "GSM520700", "GSM520701", "GSM520702", "GSM520703" ], "type": "cell type", "id": "GDS3842_2" }, { "dataset_id": "GDS3842", "description": "fetal lung fibroblast (MRC-5)", "sample_id": [ "GSM520665", "GSM520666", "GSM520667" ], "type": "cell line", "id": "GDS3842_3" }, { "dataset_id": "GDS3842", "description": "MRC-hiPS, Tic(JCRB1331)", "sample_id": [ "GSM520668", "GSM520669", "GSM520670" ], "type": "cell line", "id": "GDS3842_4" }, { "dataset_id": "GDS3842", "description": "placental artery-derived endothelial (PAE)", "sample_id": [ "GSM520704", "GSM520705", "GSM520711" ], "type": "cell line", "id": "GDS3842_5" }, { "dataset_id": "GDS3842", "description": "PAE-hiPS", "sample_id": [ "GSM520713", "GSM520714", "GSM520715" ], "type": "cell line", "id": "GDS3842_6" }, { "dataset_id": "GDS3842", "description": "uterine endometrium (UtE)", "sample_id": [ "GSM520692", "GSM520693", "GSM520694" ], "type": "cell line", "id": "GDS3842_7" }, { "dataset_id": "GDS3842", "description": "UtE-hiPS, 1", "sample_id": [ "GSM520712", "GSM520710", "GSM520709", "GSM520697", "GSM520696", "GSM520695" ], "type": "cell line", "id": "GDS3842_8" }, { "dataset_id": "GDS3842", "description": "UtE-hiPS, 2", "sample_id": [ "GSM520703", "GSM520702", "GSM520701", "GSM520700", "GSM520699", "GSM520698" ], "type": "cell line", "id": "GDS3842_9" }, { "dataset_id": "GDS3842", "description": "amniotic ectoderm and mesoderm layer (AM)", "sample_id": [ "GSM520689", "GSM520690", "GSM520691" ], "type": "cell line", "id": "GDS3842_10" }, { "dataset_id": "GDS3842", "description": "AM-hiPS, Sage", "sample_id": [ "GSM520671", "GSM520672", "GSM520673" ], "type": "cell line", "id": "GDS3842_11" }, { "dataset_id": "GDS3842", "description": "AM-hiPS, Chives", "sample_id": [ "GSM520681", "GSM520682", "GSM520680" ], "type": "cell line", "id": "GDS3842_12" }, { "dataset_id": "GDS3842", "description": "AM-hiPS, Lovage", "sample_id": [ "GSM520677", "GSM520678", "GSM520679", "GSM520674", "GSM520675", "GSM520676" ], "type": "cell line", "id": "GDS3842_13" }, { "dataset_id": "GDS3842", "description": "AM-hiPS, Thyme", "sample_id": [ "GSM520686", "GSM520687", "GSM520688" ], "type": "cell line", "id": "GDS3842_14" }, { "dataset_id": "GDS3842", "description": "AM-hiPS, Marry", "sample_id": [ "GSM520683", "GSM520684", "GSM520685", "GSM520708", "GSM520706", "GSM520707" ], "type": "cell line", "id": "GDS3842_15" }, { "dataset_id": "GDS3842", "description": "n/a", "sample_id": [ "GSM520667", "GSM520666", "GSM520665" ], "type": "other", "id": "GDS3842_16" }, { "dataset_id": "GDS3842", "description": "passage 7", "sample_id": [ "GSM520682", "GSM520681", "GSM520673", "GSM520672", "GSM520671" ], "type": "other", "id": "GDS3842_17" }, { "dataset_id": "GDS3842", "description": "passage 8", "sample_id": [ "GSM520680", "GSM520677", "GSM520694", "GSM520693", "GSM520692" ], "type": "other", "id": "GDS3842_18" }, { "dataset_id": "GDS3842", "description": "passage 9", "sample_id": [ "GSM520679", "GSM520678" ], "type": "other", "id": "GDS3842_19" }, { "dataset_id": "GDS3842", "description": "passage 10", "sample_id": [ "GSM520689" ], "type": "other", "id": "GDS3842_20" }, { "dataset_id": "GDS3842", "description": "passage 12", "sample_id": [ "GSM520676", "GSM520675", "GSM520674" ], "type": "other", "id": "GDS3842_21" }, { "dataset_id": "GDS3842", "description": "passage 13", "sample_id": [ "GSM520700", "GSM520699", "GSM520698", "GSM520691", "GSM520690" ], "type": "other", "id": "GDS3842_22" }, { "dataset_id": "GDS3842", "description": "passage 15", "sample_id": [ "GSM520685", "GSM520684", "GSM520683" ], "type": "other", "id": "GDS3842_23" }, { "dataset_id": "GDS3842", "description": "passage 16", "sample_id": [ "GSM520711", "GSM520705", "GSM520704", "GSM520688", "GSM520687", "GSM520686" ], "type": "other", "id": "GDS3842_24" }, { "dataset_id": "GDS3842", "description": "passage 18", "sample_id": [ "GSM520715", "GSM520714", "GSM520713", "GSM520697", "GSM520696", "GSM520695", "GSM520703", "GSM520702", "GSM520701" ], "type": "other", "id": "GDS3842_25" }, { "dataset_id": "GDS3842", "description": "passage 19", "sample_id": [ "GSM520708" ], "type": "other", "id": "GDS3842_26" }, { "dataset_id": "GDS3842", "description": "passage 20", "sample_id": [ "GSM520707", "GSM520706" ], "type": "other", "id": "GDS3842_27" }, { "dataset_id": "GDS3842", "description": "passage 22", "sample_id": [ "GSM520670", "GSM520669", "GSM520668" ], "type": "other", "id": "GDS3842_28" }, { "dataset_id": "GDS3842", "description": "passage 27", "sample_id": [ "GSM520712", "GSM520710", "GSM520709" ], "type": "other", "id": "GDS3842_29" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS3842", "version": 1.0, "instances": "51", "variables": 29585, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3842.tab", "compression": "gz" } ], [ [ "GDS3846.tab" ], { "title": "Ciliopathy-based photoreceptor degeneration model: time course", "description": "Analysis of retina from PKD-2-247 (TGR) males at 1 and 3 months of age (i.e., before and after retinal vasoregression). The TGR model develops primary photoreceptor degeneration and secondary vasoregression. Results provide insight into molecular mechanisms underlying development of vasoregression.", "type": "Expression profiling by array", "pubmed_id": "21379381", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE20967", "order": "none", "update_date": "Sep 12 2011", "subsets": [ { "dataset_id": "GDS3846", "description": "Spraque-Dawley", "sample_id": [ "GSM524171", "GSM524172", "GSM524173", "GSM524174", "GSM524175", "GSM524176" ], "type": "strain", "id": "GDS3846_1" }, { "dataset_id": "GDS3846", "description": "PKD-2-247", "sample_id": [ "GSM524177", "GSM524178", "GSM524179", "GSM524180", "GSM524181", "GSM524182" ], "type": "strain", "id": "GDS3846_2" }, { "dataset_id": "GDS3846", "description": "Wild type", "sample_id": [ "GSM524171", "GSM524172", "GSM524173", "GSM524174", "GSM524175", "GSM524176" ], "type": "genotype/variation", "id": "GDS3846_3" }, { "dataset_id": "GDS3846", "description": "Truncated polycystin-2", "sample_id": [ "GSM524177", "GSM524178", "GSM524179", "GSM524180", "GSM524181", "GSM524182" ], "type": "genotype/variation", "id": "GDS3846_4" }, { "dataset_id": "GDS3846", "description": "1 month", "sample_id": [ "GSM524171", "GSM524172", "GSM524173", "GSM524177", "GSM524178", "GSM524179" ], "type": "age", "id": "GDS3846_5" }, { "dataset_id": "GDS3846", "description": "3 months", "sample_id": [ "GSM524174", "GSM524175", "GSM524176", "GSM524180", "GSM524181", "GSM524182" ], "type": "age", "id": "GDS3846_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3846", "version": 1.0, "instances": "12", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3846.tab", "compression": "gz" } ], [ [ "GDS3847.tab" ], { "title": "Hypothalamus development: hypothalamic and preoptic area tissues", "description": "Analysis of the hypothalamus and preoptic area from C57Bl/6 and CD-1 males and females across 9 embryonic/3 postnatal time points. The hypothalamus is a central regulator of many behaviors essential for survival. Results provide insight into molecular pathways mediating hypothalamic development.", "type": "Expression profiling by array", "pubmed_id": "20436479", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE21278", "order": "none", "update_date": "Sep 12 2011", "subsets": [ { "dataset_id": "GDS3847", "description": "CD-1", "sample_id": [ "GSM531953", "GSM531952", "GSM531951", "GSM531950", "GSM531949", "GSM531948", "GSM531947", "GSM531946", "GSM531945", "GSM531884", "GSM531883", "GSM531882", "GSM531881", "GSM531880", "GSM531879", "GSM531878", "GSM531877", "GSM531876", "GSM531875", "GSM531874", "GSM531873", "GSM531872", "GSM531871", "GSM531870" ], "type": "strain", "id": "GDS3847_1" }, { "dataset_id": "GDS3847", "description": "C57Bl/6", "sample_id": [ "GSM531858", "GSM531857", "GSM531856", "GSM531855", "GSM531854", "GSM531853", "GSM531852", "GSM531851", "GSM531850", "GSM531849", "GSM531848", "GSM531847", "GSM531846", "GSM531845", "GSM531844", "GSM531843", "GSM531836", "GSM531835", "GSM531834", "GSM531833", "GSM531832", "GSM531831", "GSM531818", "GSM531810" ], "type": "strain", "id": "GDS3847_2" }, { "dataset_id": "GDS3847", "description": "Male", "sample_id": [ "GSM531953", "GSM531951", "GSM531949", "GSM531947", "GSM531945", "GSM531883", "GSM531881", "GSM531879", "GSM531877", "GSM531875", "GSM531873", "GSM531871", "GSM531858", "GSM531856", "GSM531854", "GSM531852", "GSM531850", "GSM531848", "GSM531846", "GSM531844", "GSM531836", "GSM531834", "GSM531832", "GSM531818" ], "type": "gender", "id": "GDS3847_3" }, { "dataset_id": "GDS3847", "description": "Female", "sample_id": [ "GSM531952", "GSM531950", "GSM531948", "GSM531946", "GSM531884", "GSM531882", "GSM531880", "GSM531878", "GSM531876", "GSM531874", "GSM531872", "GSM531870", "GSM531857", "GSM531855", "GSM531853", "GSM531851", "GSM531849", "GSM531847", "GSM531845", "GSM531843", "GSM531835", "GSM531833", "GSM531831", "GSM531810" ], "type": "gender", "id": "GDS3847_4" }, { "dataset_id": "GDS3847", "description": "Embryonic day 10", "sample_id": [ "GSM531810", "GSM531818", "GSM531870", "GSM531871" ], "type": "age", "id": "GDS3847_5" }, { "dataset_id": "GDS3847", "description": "Embryonic day 11", "sample_id": [ "GSM531831", "GSM531832", "GSM531872", "GSM531873" ], "type": "age", "id": "GDS3847_6" }, { "dataset_id": "GDS3847", "description": "Embryonic day 12", "sample_id": [ "GSM531874", "GSM531875", "GSM531833", "GSM531834" ], "type": "age", "id": "GDS3847_7" }, { "dataset_id": "GDS3847", "description": "Embryonic day 13", "sample_id": [ "GSM531835", "GSM531836", "GSM531876", "GSM531877" ], "type": "age", "id": "GDS3847_8" }, { "dataset_id": "GDS3847", "description": "Embryonic day 14", "sample_id": [ "GSM531843", "GSM531844", "GSM531878", "GSM531879" ], "type": "age", "id": "GDS3847_9" }, { "dataset_id": "GDS3847", "description": "Embryonic day 15", "sample_id": [ "GSM531880", "GSM531881", "GSM531845", "GSM531846" ], "type": "age", "id": "GDS3847_10" }, { "dataset_id": "GDS3847", "description": "Embryonic day 16", "sample_id": [ "GSM531847", "GSM531848", "GSM531882", "GSM531883" ], "type": "age", "id": "GDS3847_11" }, { "dataset_id": "GDS3847", "description": "Embryonic day 17", "sample_id": [ "GSM531884", "GSM531945", "GSM531849", "GSM531850" ], "type": "age", "id": "GDS3847_12" }, { "dataset_id": "GDS3847", "description": "Embryonic day 18", "sample_id": [ "GSM531851", "GSM531852", "GSM531946", "GSM531947" ], "type": "age", "id": "GDS3847_13" }, { "dataset_id": "GDS3847", "description": "Postnatal day 0", "sample_id": [ "GSM531853", "GSM531854", "GSM531948", "GSM531949" ], "type": "age", "id": "GDS3847_14" }, { "dataset_id": "GDS3847", "description": "Postnatal day 21", "sample_id": [ "GSM531950", "GSM531951", "GSM531855", "GSM531856" ], "type": "age", "id": "GDS3847_15" }, { "dataset_id": "GDS3847", "description": "Postnatal day 42", "sample_id": [ "GSM531857", "GSM531858", "GSM531952", "GSM531953" ], "type": "age", "id": "GDS3847_16" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3847", "version": 1.0, "instances": "48", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3847.tab", "compression": "gz" } ], [ [ "GDS3848.tab" ], { "title": "HMEC-1 endothelial cell line response to infection by Rickettsia prowazekii", "description": "Analysis of endothelial cells infected by R. prowazekii strains (Erus, Evir, Rp22) of varying virulence. Virulent R. prowazekii causes epidemic typhus and avirulent strains can revert to virulence. Results provide insight into the molecular basis of virulence and adaptive mutation in R. prowazekii.", "type": "Expression profiling by array", "pubmed_id": "20368341", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE16123", "order": "none", "update_date": "Sep 06 2011", "subsets": [ { "dataset_id": "GDS3848", "description": "control, uninfected", "sample_id": [ "GSM403281", "GSM403377", "GSM403378", "GSM403379" ], "type": "strain", "id": "GDS3848_1" }, { "dataset_id": "GDS3848", "description": "R. prowazekii Rp22", "sample_id": [ "GSM403380", "GSM403382", "GSM403383", "GSM403384" ], "type": "strain", "id": "GDS3848_2" }, { "dataset_id": "GDS3848", "description": "R. prowazekii Evir", "sample_id": [ "GSM403387", "GSM403388", "GSM403389", "GSM403391" ], "type": "strain", "id": "GDS3848_3" }, { "dataset_id": "GDS3848", "description": "R. prowazekii Erus", "sample_id": [ "GSM403444", "GSM403445", "GSM403446", "GSM403447" ], "type": "strain", "id": "GDS3848_4" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS3848", "version": 1.0, "instances": "16", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3848.tab", "compression": "gz" } ], [ [ "GDS3849.tab" ], { "title": "Hematopoietic differentiation model: time course", "description": "Analysis of Hoxa9-ER, an AML cell line created by transducing bone marrow with Hoxa9 fused to a modified ER ligand binding domain in the presence of tamoxifen (4-OHT), for up to 5 days post 4-OHT withdrawal which induces differentiation. Results provide insight into role of Hoxa9 in hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "20541477", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE21299", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3849", "description": "day 0", "sample_id": [ "GSM532289", "GSM532290", "GSM532291" ], "type": "time", "id": "GDS3849_1" }, { "dataset_id": "GDS3849", "description": "day 3", "sample_id": [ "GSM532280", "GSM532281", "GSM532282" ], "type": "time", "id": "GDS3849_2" }, { "dataset_id": "GDS3849", "description": "day 4", "sample_id": [ "GSM532283", "GSM532284", "GSM532285" ], "type": "time", "id": "GDS3849_3" }, { "dataset_id": "GDS3849", "description": "day 5", "sample_id": [ "GSM532286", "GSM532287", "GSM532288" ], "type": "time", "id": "GDS3849_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3849", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3849.tab", "compression": "gz" } ], [ [ "GDS385.tab" ], { "title": "Congenital heart disease - E12.5 (Mu11K-B)", "description": "Examination of whole heart of embryonic day 12.5 Csx/Nkx2.5 heterozygous and homozygous embryos to identify downstream target genes and affected pathways of Nkx2.5. Nkx2.5 is a cardiogenic marker with critical function in cardiac differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE528", "order": "none", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS385", "description": "wildtype", "sample_id": [ "GSM7778", "GSM7779", "GSM7780", "GSM7781", "GSM7782" ], "type": "strain", "id": "GDS385_1" }, { "dataset_id": "GDS385", "description": "Csx/Nkx2.5 heterozygous", "sample_id": [ "GSM7783", "GSM7784", "GSM7785", "GSM7786" ], "type": "strain", "id": "GDS385_2" }, { "dataset_id": "GDS385", "description": "Csx/Nkx2.5 homozygous", "sample_id": [ "GSM7787", "GSM7788", "GSM7789", "GSM7791" ], "type": "strain", "id": "GDS385_3" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS385", "version": 1.0, "instances": "13", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS385.tab", "compression": "gz" } ], [ [ "GDS3850.tab" ], { "title": "Peroxisome proliferator-activated receptor-\u03b3 ligand treatment: adipose tissue, skeletal muscle, and liver", "description": "Analysis of 3 tissue types from lean and insulin resistant, obese Zucker rats untreated or treated with 1 of 4 PPAR\u03b3 ligands (pioglitazone, rosiglitazone, troglitazone, AG035029). Results provide insight into the role of PPAR\u03b3 as an essential mediator for maintenance of body insulin sensitivity.", "type": "Expression profiling by array", "pubmed_id": "20959535", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE21329", "order": "none", "update_date": "Sep 13 2011", "subsets": [ { "dataset_id": "GDS3850", "description": "lean (fa/+)", "sample_id": [ "GSM533029", "GSM533030", "GSM533031", "GSM533011", "GSM533012", "GSM533013", "GSM532993", "GSM532994", "GSM532995" ], "type": "genotype/variation", "id": "GDS3850_1" }, { "dataset_id": "GDS3850", "description": "fatty (fa/fa)", "sample_id": [ "GSM533038", "GSM533039", "GSM533040", "GSM533035", "GSM533036", "GSM533037", "GSM533032", "GSM533033", "GSM533034", "GSM533023", "GSM533024", "GSM533025", "GSM533026", "GSM533027", "GSM533028", "GSM533020", "GSM533021", "GSM533022", "GSM533017", "GSM533018", "GSM533019", "GSM533014", "GSM533015", "GSM533016", "GSM533005", "GSM533006", "GSM533007", "GSM533008", "GSM533009", "GSM533010", "GSM533002", "GSM533003", "GSM533004", "GSM532999", "GSM533000", "GSM533001", "GSM532996", "GSM532997", "GSM532998", "GSM532987", "GSM532988", "GSM532989", "GSM532990", "GSM532991", "GSM532992" ], "type": "genotype/variation", "id": "GDS3850_2" }, { "dataset_id": "GDS3850", "description": "adipose tissue (epididymal)", "sample_id": [ "GSM532987", "GSM532988", "GSM532989", "GSM532990", "GSM532991", "GSM532992", "GSM532993", "GSM532994", "GSM532995", "GSM532996", "GSM532997", "GSM532998", "GSM532999", "GSM533000", "GSM533001", "GSM533002", "GSM533003", "GSM533004" ], "type": "tissue", "id": "GDS3850_3" }, { "dataset_id": "GDS3850", "description": "liver", "sample_id": [ "GSM533005", "GSM533006", "GSM533007", "GSM533008", "GSM533009", "GSM533010", "GSM533011", "GSM533012", "GSM533013", "GSM533014", "GSM533015", "GSM533016", "GSM533017", "GSM533018", "GSM533019", "GSM533020", "GSM533021", "GSM533022" ], "type": "tissue", "id": "GDS3850_4" }, { "dataset_id": "GDS3850", "description": "skeletal muscle (gastrocnemius)", "sample_id": [ "GSM533023", "GSM533024", "GSM533025", "GSM533026", "GSM533027", "GSM533028", "GSM533029", "GSM533030", "GSM533031", "GSM533032", "GSM533033", "GSM533034", "GSM533035", "GSM533036", "GSM533037", "GSM533038", "GSM533039", "GSM533040" ], "type": "tissue", "id": "GDS3850_5" }, { "dataset_id": "GDS3850", "description": "AG035029", "sample_id": [ "GSM532989", "GSM532988", "GSM532987", "GSM533007", "GSM533006", "GSM533005", "GSM533025", "GSM533024", "GSM533023" ], "type": "agent", "id": "GDS3850_6" }, { "dataset_id": "GDS3850", "description": "Pioglitazone", "sample_id": [ "GSM532998", "GSM532997", "GSM532996", "GSM533016", "GSM533015", "GSM533014", "GSM533034", "GSM533033", "GSM533032" ], "type": "agent", "id": "GDS3850_7" }, { "dataset_id": "GDS3850", "description": "Rosiglitazone", "sample_id": [ "GSM533001", "GSM533000", "GSM532999", "GSM533019", "GSM533018", "GSM533017", "GSM533037", "GSM533036", "GSM533035" ], "type": "agent", "id": "GDS3850_8" }, { "dataset_id": "GDS3850", "description": "Troglitazone", "sample_id": [ "GSM533004", "GSM533003", "GSM533002", "GSM533022", "GSM533021", "GSM533020", "GSM533040", "GSM533039", "GSM533038" ], "type": "agent", "id": "GDS3850_9" }, { "dataset_id": "GDS3850", "description": "control", "sample_id": [ "GSM532992", "GSM532991", "GSM532990", "GSM533010", "GSM533009", "GSM533008", "GSM533028", "GSM533027", "GSM533026", "GSM532995", "GSM532994", "GSM532993", "GSM533013", "GSM533012", "GSM533011", "GSM533031", "GSM533030", "GSM533029" ], "type": "agent", "id": "GDS3850_10" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3850", "version": 1.0, "instances": "54", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3850.tab", "compression": "gz" } ], [ [ "GDS3851.tab" ], { "title": "Smooth muscle cell cord morphogenesis (HG-U133B)", "description": "Analysis of HITC6 vascular smooth muscle cells (SMC) before and after serum withdrawal-induced formation of cords showing end-to-end and side-to-side SMC assemblies that approximate the association of SMCs in the arterial media. Results provide insight into molecular basis of SMC cord morphogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21499246", "25767275" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21363", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3851", "description": "0 days (before serum withdrawal)", "sample_id": [ "GSM533850", "GSM533851", "GSM533852" ], "type": "time", "id": "GDS3851_1" }, { "dataset_id": "GDS3851", "description": "8 days (after serum withdrawal)", "sample_id": [ "GSM533853", "GSM533854", "GSM533855" ], "type": "time", "id": "GDS3851_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3851", "version": 1.0, "instances": "6", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3851.tab", "compression": "gz" } ], [ [ "GDS3852.tab" ], { "title": "Smooth muscle cell cord morphogenesis (HG-U133A)", "description": "Analysis of HITC6 vascular smooth muscle cells (SMC) before and after serum withdrawal-induced formation of cords showing end-to-end and side-to-side SMC assemblies that approximate the association of SMCs in the arterial media. Results provide insight into molecular basis of SMC cord morphogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21499246", "25767275" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21363", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3852", "description": "0 days (before serum withdrawal)", "sample_id": [ "GSM533844", "GSM533845", "GSM533846" ], "type": "time", "id": "GDS3852_1" }, { "dataset_id": "GDS3852", "description": "8 days (after serum withdrawal)", "sample_id": [ "GSM533847", "GSM533848", "GSM533849" ], "type": "time", "id": "GDS3852_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3852", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3852.tab", "compression": "gz" } ], [ [ "GDS3853.tab" ], { "title": "Ductal carcinoma in situ: mammary gland", "description": "Analysis of ductal carcinoma in situ (DCIS) of mammary gland. DCIS represents an early, pre-invasive stage in development of invasive breast carcinoma. These results, together with results from a rodent model of DCIS development, provide insight into molecular basis of early stages of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21314937", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE21422", "order": "none", "update_date": "Sep 21 2011", "subsets": [ { "dataset_id": "GDS3853", "description": "control (healthy breast)", "sample_id": [ "GSM535617", "GSM535616", "GSM535615", "GSM535614", "GSM535613" ], "type": "disease state", "id": "GDS3853_1" }, { "dataset_id": "GDS3853", "description": "ductal carcinoma in situ (DCIS)", "sample_id": [ "GSM535612", "GSM535611", "GSM535610", "GSM535609", "GSM535608", "GSM535607", "GSM535606", "GSM535605", "GSM535604" ], "type": "disease state", "id": "GDS3853_2" }, { "dataset_id": "GDS3853", "description": "invasive ductal carcinoma (IDC)", "sample_id": [ "GSM535622", "GSM535621", "GSM535620", "GSM535619", "GSM535618" ], "type": "disease state", "id": "GDS3853_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3853", "version": 1.0, "instances": "19", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3853.tab", "compression": "gz" } ], [ [ "GDS3854.tab" ], { "title": "Early neuronal development: embryos", "description": "Analysis of atonal-expressing (atoGFP+) and atoGFP- cells from transgenic wild type and ato-mutant embryos, at 3 time points corresponding to the first 3hr of neural development. Results provide insight into how proneural factors such as ato regulate specialized neuronal differentiation pathways.", "type": "Expression profiling by array", "pubmed_id": "21283833", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "transformed count", "reference_series": "GSE21520", "order": "none", "update_date": "Sep 21 2011", "subsets": [ { "dataset_id": "GDS3854", "description": "atonalGFP reporter_plus", "sample_id": [ "GSM537542", "GSM537544", "GSM537546", "GSM537548", "GSM537550", "GSM537552", "GSM537554", "GSM537556", "GSM537559", "GSM537561", "GSM537563", "GSM537564", "GSM537565", "GSM537567", "GSM537569", "GSM537571" ], "type": "cell type", "id": "GDS3854_1" }, { "dataset_id": "GDS3854", "description": "atonalGFP reporter_minus", "sample_id": [ "GSM537566", "GSM537568", "GSM537570", "GSM537572", "GSM537543", "GSM537545", "GSM537547", "GSM537549", "GSM537551", "GSM537553", "GSM537555", "GSM537557", "GSM537558", "GSM537560", "GSM537562" ], "type": "cell type", "id": "GDS3854_2" }, { "dataset_id": "GDS3854", "description": "wild type", "sample_id": [ "GSM537542", "GSM537544", "GSM537546", "GSM537548", "GSM537550", "GSM537552", "GSM537554", "GSM537556", "GSM537559", "GSM537561", "GSM537563", "GSM537564", "GSM537543", "GSM537545", "GSM537547", "GSM537549", "GSM537551", "GSM537553", "GSM537555", "GSM537557", "GSM537558", "GSM537560", "GSM537562" ], "type": "genotype/variation", "id": "GDS3854_3" }, { "dataset_id": "GDS3854", "description": "atonal mutant", "sample_id": [ "GSM537565", "GSM537567", "GSM537569", "GSM537571", "GSM537566", "GSM537568", "GSM537570", "GSM537572" ], "type": "genotype/variation", "id": "GDS3854_4" }, { "dataset_id": "GDS3854", "description": "5.75-6.75 hrs after egg laying", "sample_id": [ "GSM537565", "GSM537566", "GSM537567", "GSM537568", "GSM537569", "GSM537570", "GSM537571", "GSM537572", "GSM537542", "GSM537543", "GSM537544", "GSM537545", "GSM537546", "GSM537547", "GSM537548", "GSM537549" ], "type": "development stage", "id": "GDS3854_5" }, { "dataset_id": "GDS3854", "description": "6.75-7.75 hrs after egg laying", "sample_id": [ "GSM537550", "GSM537551", "GSM537552", "GSM537553", "GSM537554", "GSM537555", "GSM537556", "GSM537557" ], "type": "development stage", "id": "GDS3854_6" }, { "dataset_id": "GDS3854", "description": "7.75-8.75 hrs after egg laying", "sample_id": [ "GSM537558", "GSM537559", "GSM537560", "GSM537561", "GSM537562", "GSM537563", "GSM537564" ], "type": "development stage", "id": "GDS3854_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3854", "version": 1.0, "instances": "31", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3854.tab", "compression": "gz" } ], [ [ "GDS3855.tab" ], { "title": "Monozygotic twins discordant for postmenopausal hormone replacement therapy: mid-part of vastus lateralis muscle", "description": "Analysis of skeletal muscle biopsies from monozygotic female twin pairs (55-62 years) discordant for estrogen-based, HRT (2-16 years). Results provide insight into molecular mechanisms underlying the beneficial effects of long-term HRT on skeletal muscle characteristics.", "type": "Expression profiling by array", "pubmed_id": "20883525", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE21421", "order": "none", "update_date": "Sep 21 2011", "subsets": [ { "dataset_id": "GDS3855", "description": "estrogen-based HRT", "sample_id": [ "GSM535582", "GSM535584", "GSM535586", "GSM535588", "GSM535590", "GSM535592", "GSM535594", "GSM535596", "GSM535599", "GSM535600", "GSM535603" ], "type": "agent", "id": "GDS3855_1" }, { "dataset_id": "GDS3855", "description": "control", "sample_id": [ "GSM535583", "GSM535585", "GSM535587", "GSM535589", "GSM535591", "GSM535593", "GSM535595", "GSM535597", "GSM535598", "GSM535601", "GSM535602" ], "type": "agent", "id": "GDS3855_2" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS3855", "version": 1.0, "instances": "22", "variables": 39533, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3855.tab", "compression": "gz" } ], [ [ "GDS3856.tab" ], { "title": "Oral mucosal fibroblast response to artificial wounding stimulus", "description": "Temporal analysis of oral mucosal (OM) fibroblasts and patient-matched skin fibroblasts following serum starvation/induction. OM fibroblasts exhibit a preferential wound-healing response compared to that of dermis. Results provide insight into molecular basis of OM fibroblast wound healing response.", "type": "Expression profiling by array", "pubmed_id": "21098492", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE21648", "order": "none", "update_date": "Sep 21 2011", "subsets": [ { "dataset_id": "GDS3856", "description": "patient 3", "sample_id": [ "GSM540051", "GSM540055", "GSM540059", "GSM540063" ], "type": "individual", "id": "GDS3856_1" }, { "dataset_id": "GDS3856", "description": "patient 4", "sample_id": [ "GSM540052", "GSM540056", "GSM540060", "GSM540064" ], "type": "individual", "id": "GDS3856_2" }, { "dataset_id": "GDS3856", "description": "patient 5", "sample_id": [ "GSM540053", "GSM540057", "GSM540061" ], "type": "individual", "id": "GDS3856_3" }, { "dataset_id": "GDS3856", "description": "patient 6", "sample_id": [ "GSM540054", "GSM540058", "GSM540062", "GSM540065" ], "type": "individual", "id": "GDS3856_4" }, { "dataset_id": "GDS3856", "description": "skin fibroblast", "sample_id": [ "GSM540065", "GSM540058", "GSM540057", "GSM540064", "GSM540056", "GSM540063", "GSM540055" ], "type": "cell type", "id": "GDS3856_5" }, { "dataset_id": "GDS3856", "description": "oral mucosal fibroblast", "sample_id": [ "GSM540062", "GSM540054", "GSM540061", "GSM540053", "GSM540060", "GSM540052", "GSM540059", "GSM540051" ], "type": "cell type", "id": "GDS3856_6" }, { "dataset_id": "GDS3856", "description": "serum starvation", "sample_id": [ "GSM540051", "GSM540052", "GSM540053", "GSM540054", "GSM540055", "GSM540056", "GSM540057", "GSM540058" ], "type": "protocol", "id": "GDS3856_7" }, { "dataset_id": "GDS3856", "description": "serum stimulation", "sample_id": [ "GSM540059", "GSM540060", "GSM540061", "GSM540062", "GSM540063", "GSM540064", "GSM540065" ], "type": "protocol", "id": "GDS3856_8" }, { "dataset_id": "GDS3856", "description": "0 hour", "sample_id": [ "GSM540051", "GSM540052", "GSM540053", "GSM540054", "GSM540055", "GSM540056", "GSM540057", "GSM540058" ], "type": "time", "id": "GDS3856_9" }, { "dataset_id": "GDS3856", "description": "6 hours", "sample_id": [ "GSM540059", "GSM540060", "GSM540061", "GSM540062", "GSM540063", "GSM540064", "GSM540065" ], "type": "time", "id": "GDS3856_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3856", "version": 1.0, "instances": "15", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3856.tab", "compression": "gz" } ], [ [ "GDS3858.tab" ], { "title": "Hypoxia effect on monocyte-derived, mature dendritic cells", "description": "Analysis of mature dendritic cells (mDC) generated from monocytes under chronic hypoxia (1%O2). Hypoxia is a common feature at pathologic sites that creates a unique microenvironment affecting cell phenotype and behavior. Results provide insight into the impact of chronic hypoxia on mDC development.", "type": "Expression profiling by array", "pubmed_id": "21148811", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE22282", "order": "none", "update_date": "Sep 26 2011", "subsets": [ { "dataset_id": "GDS3858", "description": "hypoxia", "sample_id": [ "GSM554394", "GSM554395", "GSM554396" ], "type": "protocol", "id": "GDS3858_1" }, { "dataset_id": "GDS3858", "description": "normoxia", "sample_id": [ "GSM554397", "GSM554398", "GSM554399" ], "type": "protocol", "id": "GDS3858_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3858", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3858.tab", "compression": "gz" } ], [ [ "GDS3859.tab" ], { "title": "Dextran sodium sulfate-induced colitis model: time course", "description": "Analysis of colon from C57BL/6J 12-14wk-olds treated with DSS for up to 6 days. DSS model emulates clinical and histopathological features of ulcerative colitis (UC), a type of Inflammatory Bowel Disease (IBD). Results provide insight into molecular mechanisms underlying development of DSS colitis.", "type": "Expression profiling by array", "pubmed_id": "20923862", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE22307", "order": "none", "update_date": "Sep 26 2011", "subsets": [ { "dataset_id": "GDS3859", "description": "normal", "sample_id": [ "GSM555189", "GSM555190", "GSM555191", "GSM555192", "GSM555193" ], "type": "disease state", "id": "GDS3859_1" }, { "dataset_id": "GDS3859", "description": "DSS colitis", "sample_id": [ "GSM555194", "GSM555195", "GSM555196", "GSM555197", "GSM555198", "GSM555199", "GSM555200", "GSM555201", "GSM555202", "GSM555203", "GSM555204", "GSM555205", "GSM555206", "GSM555207", "GSM555208", "GSM555209", "GSM555210", "GSM555211" ], "type": "disease state", "id": "GDS3859_2" }, { "dataset_id": "GDS3859", "description": "control", "sample_id": [ "GSM555189", "GSM555190", "GSM555191", "GSM555192", "GSM555193" ], "type": "agent", "id": "GDS3859_3" }, { "dataset_id": "GDS3859", "description": "dextran sodium sulfate", "sample_id": [ "GSM555194", "GSM555195", "GSM555196", "GSM555197", "GSM555198", "GSM555199", "GSM555200", "GSM555201", "GSM555202", "GSM555203", "GSM555204", "GSM555205", "GSM555206", "GSM555207", "GSM555208", "GSM555209", "GSM555210", "GSM555211" ], "type": "agent", "id": "GDS3859_4" }, { "dataset_id": "GDS3859", "description": "0 day", "sample_id": [ "GSM555193", "GSM555192", "GSM555191", "GSM555190", "GSM555189" ], "type": "time", "id": "GDS3859_5" }, { "dataset_id": "GDS3859", "description": "2 day", "sample_id": [ "GSM555197", "GSM555196", "GSM555195", "GSM555199", "GSM555198", "GSM555194" ], "type": "time", "id": "GDS3859_6" }, { "dataset_id": "GDS3859", "description": "4 day", "sample_id": [ "GSM555205", "GSM555204", "GSM555203", "GSM555202", "GSM555201", "GSM555200" ], "type": "time", "id": "GDS3859_7" }, { "dataset_id": "GDS3859", "description": "6 day", "sample_id": [ "GSM555209", "GSM555208", "GSM555207", "GSM555211", "GSM555210", "GSM555206" ], "type": "time", "id": "GDS3859_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3859", "version": 1.0, "instances": "23", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3859.tab", "compression": "gz" } ], [ [ "GDS386.tab" ], { "title": "Arthritis synoviocyte response to TNF alpha", "description": "Temporal analysis of arthritic synovial biopsies treated with TNF alpha at 0, 4 and 24 hours.", "type": "Expression profiling by array", "pubmed_id": "12965196", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE516", "order": "ordered", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS386", "description": "0 hours", "sample_id": [ "GSM7735" ], "type": "time", "id": "GDS386_1" }, { "dataset_id": "GDS386", "description": "4 hours", "sample_id": [ "GSM7736" ], "type": "time", "id": "GDS386_2" }, { "dataset_id": "GDS386", "description": "24 hours", "sample_id": [ "GSM7737" ], "type": "time", "id": "GDS386_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS386", "version": 1.0, "instances": "3", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS386.tab", "compression": "gz" } ], [ [ "GDS3860.tab" ], { "title": "Erythropoiesis: PBMC-derived, FACS-sorted erythroid progenitors", "description": "Analysis of 4 discrete populations of erythroid progenitors at successive erythropoietin-dependent stages of erythropoiesis: CFU-E, Pro-E, Int-E and Late-E. Unsorted erythroid cells at each stage also examined. Results provide insight into the molecular mechanisms underlying erythroblast maturation.", "type": "Expression profiling by array", "pubmed_id": "21270440", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE22552", "order": "none", "update_date": "Sep 27 2011", "subsets": [ { "dataset_id": "GDS3860", "description": "sorted", "sample_id": [ "GSM559689", "GSM559690", "GSM559691", "GSM559695", "GSM559696", "GSM559697", "GSM559692", "GSM559693", "GSM559694", "GSM559698", "GSM559699", "GSM559700" ], "type": "protocol", "id": "GDS3860_1" }, { "dataset_id": "GDS3860", "description": "unsorted", "sample_id": [ "GSM559704", "GSM559701", "GSM559702", "GSM559703" ], "type": "protocol", "id": "GDS3860_2" }, { "dataset_id": "GDS3860", "description": "CFU-erythroid", "sample_id": [ "GSM559689", "GSM559690", "GSM559691", "GSM559701" ], "type": "development stage", "id": "GDS3860_3" }, { "dataset_id": "GDS3860", "description": "Pro-erythroblast", "sample_id": [ "GSM559692", "GSM559693", "GSM559694", "GSM559702" ], "type": "development stage", "id": "GDS3860_4" }, { "dataset_id": "GDS3860", "description": "Intermediate-erythroblast", "sample_id": [ "GSM559695", "GSM559696", "GSM559697", "GSM559703" ], "type": "development stage", "id": "GDS3860_5" }, { "dataset_id": "GDS3860", "description": "Late-erythroblast", "sample_id": [ "GSM559704", "GSM559698", "GSM559699", "GSM559700" ], "type": "development stage", "id": "GDS3860_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3860", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3860.tab", "compression": "gz" } ], [ [ "GDS3861.tab" ], { "title": "Synthetic androgen R1881 effect on transcription factor SRF-deficient prostate cancer cells", "description": "Analysis of LNCaP androgen-sensitive prostate adenocarcinoma cells, SRF (serum response factor)-silenced and treated with synthetic androgen R1881. Effects of androgens on prostate cancer (PCa) cells can be mediated by SRF. Results provide insight into targets for androgen action in PCa cells.", "type": "Expression profiling by array", "pubmed_id": "21324924", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22606", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3861", "description": "SRF Silenced", "sample_id": [ "GSM560834", "GSM560835", "GSM560836", "GSM560837", "GSM560838", "GSM560839" ], "type": "protocol", "id": "GDS3861_1" }, { "dataset_id": "GDS3861", "description": "control siRNA", "sample_id": [ "GSM560828", "GSM560829", "GSM560830", "GSM560831", "GSM560832", "GSM560833" ], "type": "protocol", "id": "GDS3861_2" }, { "dataset_id": "GDS3861", "description": "EtOH", "sample_id": [ "GSM560828", "GSM560829", "GSM560830", "GSM560834", "GSM560835", "GSM560836" ], "type": "agent", "id": "GDS3861_3" }, { "dataset_id": "GDS3861", "description": "R1881", "sample_id": [ "GSM560831", "GSM560832", "GSM560833", "GSM560837", "GSM560838", "GSM560839" ], "type": "agent", "id": "GDS3861_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3861", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3861.tab", "compression": "gz" } ], [ [ "GDS3862.tab" ], { "title": "Embryonic development of male reproductive tract tissues", "description": "Analysis of efferent ducts, epididymis, and vas deferens of CD1 males from embryonic day 14 to postnatal day 1. Proper development of these tissues is essential for fertility. Results provide insight into molecular mechanisms underlying tissue-specific regulation in organ morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "20652947", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE22616", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3862", "description": "efferent ducts", "sample_id": [ "GSM560923", "GSM560924", "GSM560925", "GSM560926", "GSM560927", "GSM560928", "GSM560929", "GSM560930" ], "type": "tissue", "id": "GDS3862_1" }, { "dataset_id": "GDS3862", "description": "epididymis", "sample_id": [ "GSM560931", "GSM560932", "GSM560933", "GSM560934", "GSM560935", "GSM560936", "GSM560937", "GSM560938" ], "type": "tissue", "id": "GDS3862_2" }, { "dataset_id": "GDS3862", "description": "vas deferens", "sample_id": [ "GSM560939", "GSM560940", "GSM560941", "GSM560942", "GSM560943", "GSM560944", "GSM560945", "GSM560946" ], "type": "tissue", "id": "GDS3862_3" }, { "dataset_id": "GDS3862", "description": "embryonic day 14.5", "sample_id": [ "GSM560923", "GSM560924", "GSM560931", "GSM560932", "GSM560939", "GSM560940" ], "type": "development stage", "id": "GDS3862_4" }, { "dataset_id": "GDS3862", "description": "embryonic day 16.5", "sample_id": [ "GSM560925", "GSM560926", "GSM560933", "GSM560934", "GSM560941", "GSM560942" ], "type": "development stage", "id": "GDS3862_5" }, { "dataset_id": "GDS3862", "description": "embryonic day 18.5", "sample_id": [ "GSM560927", "GSM560928", "GSM560935", "GSM560936", "GSM560943", "GSM560944" ], "type": "development stage", "id": "GDS3862_6" }, { "dataset_id": "GDS3862", "description": "postnatal day 1", "sample_id": [ "GSM560929", "GSM560930", "GSM560937", "GSM560938", "GSM560945", "GSM560946" ], "type": "development stage", "id": "GDS3862_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3862", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3862.tab", "compression": "gz" } ], [ [ "GDS3864.tab" ], { "title": "In vivo glucocorticoid effect on non-leukemic peripheral blood lymphocytes", "description": "Analysis of mononuclear cells from non-leukemic individuals (1 healthy/3 epileptic) up to 24 hr after glucocorticoid (GC) injection. GCs induce apoptosis and are used to treat lymphoid malignancies. Results provide insight into molecular mechanisms responsible for the anti-leukemic GC effects.", "type": "Expression profiling by array", "pubmed_id": "21092265", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE22779", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3864", "description": "epilepsy (non-leukemic)", "sample_id": [ "GSM563242", "GSM563244", "GSM563243", "GSM563241", "GSM563246", "GSM563248", "GSM563247", "GSM563245", "GSM563250", "GSM563252", "GSM563251", "GSM563249" ], "type": "disease state", "id": "GDS3864_1" }, { "dataset_id": "GDS3864", "description": "healthy", "sample_id": [ "GSM563254", "GSM563256", "GSM563255", "GSM563253" ], "type": "disease state", "id": "GDS3864_2" }, { "dataset_id": "GDS3864", "description": "patient E3", "sample_id": [ "GSM563241", "GSM563242", "GSM563243", "GSM563244" ], "type": "individual", "id": "GDS3864_3" }, { "dataset_id": "GDS3864", "description": "patient E4", "sample_id": [ "GSM563245", "GSM563246", "GSM563247", "GSM563248" ], "type": "individual", "id": "GDS3864_4" }, { "dataset_id": "GDS3864", "description": "patient E5", "sample_id": [ "GSM563249", "GSM563250", "GSM563251", "GSM563252" ], "type": "individual", "id": "GDS3864_5" }, { "dataset_id": "GDS3864", "description": "non-patient", "sample_id": [ "GSM563254", "GSM563256", "GSM563255", "GSM563253" ], "type": "individual", "id": "GDS3864_6" }, { "dataset_id": "GDS3864", "description": "untreated", "sample_id": [ "GSM563241", "GSM563245", "GSM563249", "GSM563253" ], "type": "agent", "id": "GDS3864_7" }, { "dataset_id": "GDS3864", "description": "glucocorticoid", "sample_id": [ "GSM563242", "GSM563246", "GSM563250", "GSM563254", "GSM563243", "GSM563247", "GSM563251", "GSM563255", "GSM563244", "GSM563248", "GSM563252", "GSM563256" ], "type": "agent", "id": "GDS3864_8" }, { "dataset_id": "GDS3864", "description": "0 hour", "sample_id": [ "GSM563241", "GSM563245", "GSM563249", "GSM563253" ], "type": "time", "id": "GDS3864_9" }, { "dataset_id": "GDS3864", "description": "2 hours", "sample_id": [ "GSM563242", "GSM563246", "GSM563250", "GSM563254" ], "type": "time", "id": "GDS3864_10" }, { "dataset_id": "GDS3864", "description": "6 hours", "sample_id": [ "GSM563243", "GSM563247", "GSM563251", "GSM563255" ], "type": "time", "id": "GDS3864_11" }, { "dataset_id": "GDS3864", "description": "24 hours", "sample_id": [ "GSM563244", "GSM563248", "GSM563252", "GSM563256" ], "type": "time", "id": "GDS3864_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3864", "version": 1.0, "instances": "16", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3864.tab", "compression": "gz" } ], [ [ "GDS3865.tab" ], { "title": "Nephrogenesis: embryonic kidney segments", "description": "Spatial and temporal analysis of laser capture microdissected wild-type, CD1 embryonic kidney sections across 3 developmental time points (E11.5, E12.5, E15.5) representing early stages of nephron formation. Results provide insight into molecular mechanisms underlying the stages of nephrogenesis.", "type": "Expression profiling by array", "pubmed_id": "19501082", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE6290", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS3865", "description": "E11.5, Theiler stage 19", "sample_id": [ "GSM144610", "GSM144611", "GSM144612", "GSM144613", "GSM144614", "GSM144615", "GSM144616", "GSM144617", "GSM144618", "GSM144619", "GSM144620", "GSM144621" ], "type": "development stage", "id": "GDS3865_1" }, { "dataset_id": "GDS3865", "description": "E12.5, Theiler stage 20", "sample_id": [ "GSM144585", "GSM144586", "GSM144587", "GSM144588", "GSM144589" ], "type": "development stage", "id": "GDS3865_2" }, { "dataset_id": "GDS3865", "description": "E15.5, Theiler stage 23", "sample_id": [ "GSM144590", "GSM144591", "GSM144592", "GSM144593", "GSM144594", "GSM144595", "GSM144596", "GSM144597", "GSM144598", "GSM144599", "GSM144600", "GSM144601", "GSM144602", "GSM144603", "GSM144604", "GSM144605", "GSM144606", "GSM144607", "GSM144608", "GSM144609" ], "type": "development stage", "id": "GDS3865_3" }, { "dataset_id": "GDS3865", "description": "metanephric mesenchyme", "sample_id": [ "GSM144610", "GSM144611", "GSM144612", "GSM144613", "GSM144614", "GSM144615", "GSM144616", "GSM144617" ], "type": "tissue", "id": "GDS3865_4" }, { "dataset_id": "GDS3865", "description": "ureteric bud", "sample_id": [ "GSM144618", "GSM144619", "GSM144620", "GSM144621" ], "type": "tissue", "id": "GDS3865_5" }, { "dataset_id": "GDS3865", "description": "renal vesicle", "sample_id": [ "GSM144585", "GSM144586", "GSM144587", "GSM144588", "GSM144589" ], "type": "tissue", "id": "GDS3865_6" }, { "dataset_id": "GDS3865", "description": "renal corpuscle", "sample_id": [ "GSM144590", "GSM144591", "GSM144592", "GSM144593" ], "type": "tissue", "id": "GDS3865_7" }, { "dataset_id": "GDS3865", "description": "early proximal tubule", "sample_id": [ "GSM144594", "GSM144595" ], "type": "tissue", "id": "GDS3865_8" }, { "dataset_id": "GDS3865", "description": "medullary collecting duct", "sample_id": [ "GSM144596", "GSM144597", "GSM144598" ], "type": "tissue", "id": "GDS3865_9" }, { "dataset_id": "GDS3865", "description": "ureteric tip", "sample_id": [ "GSM144599", "GSM144600", "GSM144601" ], "type": "tissue", "id": "GDS3865_10" }, { "dataset_id": "GDS3865", "description": "s-shaped body", "sample_id": [ "GSM144602", "GSM144603", "GSM144604", "GSM144605" ], "type": "tissue", "id": "GDS3865_11" }, { "dataset_id": "GDS3865", "description": "renal medullary interstitium", "sample_id": [ "GSM144606", "GSM144607", "GSM144608", "GSM144609" ], "type": "tissue", "id": "GDS3865_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3865", "version": 1.0, "instances": "37", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3865.tab", "compression": "gz" } ], [ [ "GDS3866.tab" ], { "title": "Yeast response to sudden oxygen depletion: time course", "description": "Analysis of glucose-limited cultures after shift from fully aerobic (20.9% O2) or oxygen-limited (1.0% O2) to anaerobic conditions, for up to 79 (20.9% O2) or 72 (1.0% O2) h post-shift. Results provide insight into adaptative mechanisms underlying transition from respiratory to fermentative growth.", "type": "Expression profiling by array", "pubmed_id": "21348598", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE22832", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3866", "description": "1% to 0% oxygen shift", "sample_id": [ "GSM564449", "GSM564450", "GSM564451", "GSM564452", "GSM564453", "GSM564454", "GSM564455", "GSM564456", "GSM564457", "GSM564458", "GSM564459", "GSM564460", "GSM564461", "GSM564462" ], "type": "protocol", "id": "GDS3866_1" }, { "dataset_id": "GDS3866", "description": "20.9% to 0% oxygen shift", "sample_id": [ "GSM564463", "GSM564464", "GSM564465", "GSM564466", "GSM564467", "GSM564468", "GSM564469", "GSM564470", "GSM564471", "GSM564472", "GSM564473", "GSM564474", "GSM564475", "GSM564476" ], "type": "protocol", "id": "GDS3866_2" }, { "dataset_id": "GDS3866", "description": "0 hour", "sample_id": [ "GSM564449", "GSM564456", "GSM564463", "GSM564470" ], "type": "time", "id": "GDS3866_3" }, { "dataset_id": "GDS3866", "description": "0.2 hour", "sample_id": [ "GSM564450", "GSM564457", "GSM564464", "GSM564471" ], "type": "time", "id": "GDS3866_4" }, { "dataset_id": "GDS3866", "description": "1 hour", "sample_id": [ "GSM564451", "GSM564458", "GSM564465", "GSM564472" ], "type": "time", "id": "GDS3866_5" }, { "dataset_id": "GDS3866", "description": "3 hour", "sample_id": [ "GSM564452", "GSM564459", "GSM564466", "GSM564473" ], "type": "time", "id": "GDS3866_6" }, { "dataset_id": "GDS3866", "description": "8 hour", "sample_id": [ "GSM564453", "GSM564460", "GSM564467", "GSM564474" ], "type": "time", "id": "GDS3866_7" }, { "dataset_id": "GDS3866", "description": "24 hour", "sample_id": [ "GSM564454", "GSM564461", "GSM564468", "GSM564475" ], "type": "time", "id": "GDS3866_8" }, { "dataset_id": "GDS3866", "description": "72 hour", "sample_id": [ "GSM564455", "GSM564462" ], "type": "time", "id": "GDS3866_9" }, { "dataset_id": "GDS3866", "description": "79 hour", "sample_id": [ "GSM564469", "GSM564476" ], "type": "time", "id": "GDS3866_10" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS3866", "version": 1.0, "instances": "28", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3866.tab", "compression": "gz" } ], [ [ "GDS3867.tab" ], { "title": "Comparison of induced pluripotent and embryonic stem cells", "description": "Analysis of induced pluripotent stem (iPS) cells from somatic cells (melanocytes, fibroblasts, and hepatocytes) representing all 3 embryonic germ layers, embryonic stem (ES) cell lines (H1, H7, H9) and their embryoid bodies. Results suggest iPS cells retain a memory of the original somatic cells.", "type": "Expression profiling by array", "pubmed_id": "21499256", "platform": "GPL10666", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31860", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE23034", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3867", "description": "hepatocyte", "sample_id": [ "GSM568481", "GSM568482", "GSM568483" ], "type": "cell type", "id": "GDS3867_1" }, { "dataset_id": "GDS3867", "description": "hepatocyte-iPS", "sample_id": [ "GSM568484", "GSM568485", "GSM568486" ], "type": "cell type", "id": "GDS3867_2" }, { "dataset_id": "GDS3867", "description": "fibroblast", "sample_id": [ "GSM568487", "GSM568488", "GSM568489" ], "type": "cell type", "id": "GDS3867_3" }, { "dataset_id": "GDS3867", "description": "fibroblast-iPS", "sample_id": [ "GSM568490", "GSM568491", "GSM568492" ], "type": "cell type", "id": "GDS3867_4" }, { "dataset_id": "GDS3867", "description": "melanocyte", "sample_id": [ "GSM568493", "GSM568494", "GSM568495" ], "type": "cell type", "id": "GDS3867_5" }, { "dataset_id": "GDS3867", "description": "melanocyte-iPS", "sample_id": [ "GSM568496", "GSM568497", "GSM568498" ], "type": "cell type", "id": "GDS3867_6" }, { "dataset_id": "GDS3867", "description": "H1 embryonic stem", "sample_id": [ "GSM568499" ], "type": "cell type", "id": "GDS3867_7" }, { "dataset_id": "GDS3867", "description": "H7 embryonic stem", "sample_id": [ "GSM568500" ], "type": "cell type", "id": "GDS3867_8" }, { "dataset_id": "GDS3867", "description": "H9 embryonic stem", "sample_id": [ "GSM568501" ], "type": "cell type", "id": "GDS3867_9" }, { "dataset_id": "GDS3867", "description": "H1 embroid body", "sample_id": [ "GSM568502" ], "type": "cell type", "id": "GDS3867_10" }, { "dataset_id": "GDS3867", "description": "H7 embroid body", "sample_id": [ "GSM568503" ], "type": "cell type", "id": "GDS3867_11" }, { "dataset_id": "GDS3867", "description": "H9 embroid body", "sample_id": [ "GSM568504" ], "type": "cell type", "id": "GDS3867_12" }, { "dataset_id": "GDS3867", "description": "0 passages", "sample_id": [ "GSM568481", "GSM568482", "GSM568483" ], "type": "other", "id": "GDS3867_13" }, { "dataset_id": "GDS3867", "description": "4 passages", "sample_id": [ "GSM568493", "GSM568494", "GSM568495" ], "type": "other", "id": "GDS3867_14" }, { "dataset_id": "GDS3867", "description": "5 passages", "sample_id": [ "GSM568484", "GSM568490", "GSM568491", "GSM568492" ], "type": "other", "id": "GDS3867_15" }, { "dataset_id": "GDS3867", "description": "6 passages", "sample_id": [ "GSM568485" ], "type": "other", "id": "GDS3867_16" }, { "dataset_id": "GDS3867", "description": "7 passages", "sample_id": [ "GSM568486" ], "type": "other", "id": "GDS3867_17" }, { "dataset_id": "GDS3867", "description": "14 passages", "sample_id": [ "GSM568487", "GSM568488", "GSM568489" ], "type": "other", "id": "GDS3867_18" }, { "dataset_id": "GDS3867", "description": "15 passages", "sample_id": [ "GSM568496", "GSM568497" ], "type": "other", "id": "GDS3867_19" }, { "dataset_id": "GDS3867", "description": "11 passages", "sample_id": [ "GSM568498" ], "type": "other", "id": "GDS3867_20" }, { "dataset_id": "GDS3867", "description": "50 passages", "sample_id": [ "GSM568499", "GSM568500" ], "type": "other", "id": "GDS3867_21" }, { "dataset_id": "GDS3867", "description": "60 passages", "sample_id": [ "GSM568501" ], "type": "other", "id": "GDS3867_22" }, { "dataset_id": "GDS3867", "description": "n/a", "sample_id": [ "GSM568502", "GSM568503", "GSM568504" ], "type": "other", "id": "GDS3867_23" } ], "taxid": "9606", "genes": 22905, "aggregation_function": "mean", "name": "GDS3867", "version": 1.0, "instances": "24", "variables": 22908, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3867.tab", "compression": "gz" } ], [ [ "GDS3868.tab" ], { "title": "Elevated laminar shear stress effect on umbilical endothelial cells", "description": "Analysis of HUVECs cultured for 24\u2009h at a normal laminar shear stress (LSS15) or elevated shear stress (LSS75). LSS is a key regulator of endothelial function that underlies protection or predilection for atherogenesis. Results provide insight into the effect of increased LSS on the endothelium.", "type": "Expression profiling by array", "pubmed_id": "21302282", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE23289", "order": "none", "update_date": "Oct 21 2011", "subsets": [ { "dataset_id": "GDS3868", "description": "normal LSS", "sample_id": [ "GSM591781", "GSM591782", "GSM591783", "GSM591784" ], "type": "stress", "id": "GDS3868_1" }, { "dataset_id": "GDS3868", "description": "elevated LSS", "sample_id": [ "GSM591785", "GSM591786", "GSM591787", "GSM591788" ], "type": "stress", "id": "GDS3868_2" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS3868", "version": 1.0, "instances": "8", "variables": 18869, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3868.tab", "compression": "gz" } ], [ [ "GDS3869.tab" ], { "title": "Indolent B-cell lymphoma and very early chronic lymphocytic leukemia: peripheral blood CD4+ Tcells", "description": "Analysis of in vitro-stimulated CD4+ Tcells from patients with indolent B-cell malignancies (follicular lymphoma, extranodal marginal zone lymphoma) and chronic lymphocytic leukemia. Results provide insight into molecular basis of lymphoma-associated aberrant stimulation response of T helper cells.", "type": "Expression profiling by array", "pubmed_id": "21270444", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "41", "value_type": "count", "reference_series": "GSE23293", "order": "none", "update_date": "Sep 22 2011", "subsets": [ { "dataset_id": "GDS3869", "description": "35 years", "sample_id": [ "GSM571757" ], "type": "age", "id": "GDS3869_1" }, { "dataset_id": "GDS3869", "description": "36 years", "sample_id": [ "GSM571760" ], "type": "age", "id": "GDS3869_2" }, { "dataset_id": "GDS3869", "description": "37 years", "sample_id": [ "GSM571725" ], "type": "age", "id": "GDS3869_3" }, { "dataset_id": "GDS3869", "description": "41 years", "sample_id": [ "GSM571720" ], "type": "age", "id": "GDS3869_4" }, { "dataset_id": "GDS3869", "description": "42 years", "sample_id": [ "GSM571731", "GSM571756" ], "type": "age", "id": "GDS3869_5" }, { "dataset_id": "GDS3869", "description": "43 years", "sample_id": [ "GSM571742", "GSM571734" ], "type": "age", "id": "GDS3869_6" }, { "dataset_id": "GDS3869", "description": "49 years", "sample_id": [ "GSM571758", "GSM571735" ], "type": "age", "id": "GDS3869_7" }, { "dataset_id": "GDS3869", "description": "50 years", "sample_id": [ "GSM571737" ], "type": "age", "id": "GDS3869_8" }, { "dataset_id": "GDS3869", "description": "51 years", "sample_id": [ "GSM571724", "GSM571741", "GSM571748" ], "type": "age", "id": "GDS3869_9" }, { "dataset_id": "GDS3869", "description": "53 years", "sample_id": [ "GSM571722" ], "type": "age", "id": "GDS3869_10" }, { "dataset_id": "GDS3869", "description": "54 years", "sample_id": [ "GSM571730" ], "type": "age", "id": "GDS3869_11" }, { "dataset_id": "GDS3869", "description": "55 years", "sample_id": [ "GSM571733" ], "type": "age", "id": "GDS3869_12" }, { "dataset_id": "GDS3869", "description": "56 years", "sample_id": [ "GSM571744" ], "type": "age", "id": "GDS3869_13" }, { "dataset_id": "GDS3869", "description": "59 years", "sample_id": [ "GSM571755" ], "type": "age", "id": "GDS3869_14" }, { "dataset_id": "GDS3869", "description": "60 years", "sample_id": [ "GSM571732", "GSM571728", "GSM571743" ], "type": "age", "id": "GDS3869_15" }, { "dataset_id": "GDS3869", "description": "62 years", "sample_id": [ "GSM571753" ], "type": "age", "id": "GDS3869_16" }, { "dataset_id": "GDS3869", "description": "63 years", "sample_id": [ "GSM571746" ], "type": "age", "id": "GDS3869_17" }, { "dataset_id": "GDS3869", "description": "64 years", "sample_id": [ "GSM571736", "GSM571749", "GSM571751", "GSM571754" ], "type": "age", "id": "GDS3869_18" }, { "dataset_id": "GDS3869", "description": "65 years", "sample_id": [ "GSM571721", "GSM571745", "GSM571747", "GSM571723" ], "type": "age", "id": "GDS3869_19" }, { "dataset_id": "GDS3869", "description": "66 years", "sample_id": [ "GSM571739", "GSM571729", "GSM571740" ], "type": "age", "id": "GDS3869_20" }, { "dataset_id": "GDS3869", "description": "68 years", "sample_id": [ "GSM571759" ], "type": "age", "id": "GDS3869_21" }, { "dataset_id": "GDS3869", "description": "70 years", "sample_id": [ "GSM571752" ], "type": "age", "id": "GDS3869_22" }, { "dataset_id": "GDS3869", "description": "72 years", "sample_id": [ "GSM571726" ], "type": "age", "id": "GDS3869_23" }, { "dataset_id": "GDS3869", "description": "74 years", "sample_id": [ "GSM571738" ], "type": "age", "id": "GDS3869_24" }, { "dataset_id": "GDS3869", "description": "76 years", "sample_id": [ "GSM571750" ], "type": "age", "id": "GDS3869_25" }, { "dataset_id": "GDS3869", "description": "77 years", "sample_id": [ "GSM571727" ], "type": "age", "id": "GDS3869_26" }, { "dataset_id": "GDS3869", "description": "chronic lymphocytic leukemia (CLL)", "sample_id": [ "GSM571726", "GSM571730", "GSM571731", "GSM571732", "GSM571738", "GSM571739", "GSM571722" ], "type": "disease state", "id": "GDS3869_27" }, { "dataset_id": "GDS3869", "description": "follicular lymphoma (FL)", "sample_id": [ "GSM571725", "GSM571728", "GSM571729", "GSM571736", "GSM571756", "GSM571759", "GSM571721", "GSM571724" ], "type": "disease state", "id": "GDS3869_28" }, { "dataset_id": "GDS3869", "description": "mucosa associated lymphoid tissue (MALT)", "sample_id": [ "GSM571727", "GSM571735", "GSM571744", "GSM571757", "GSM571723" ], "type": "disease state", "id": "GDS3869_29" }, { "dataset_id": "GDS3869", "description": "monoclonal gammopathy of unknown significance (MGUS)", "sample_id": [ "GSM571733", "GSM571734", "GSM571737", "GSM571740", "GSM571755" ], "type": "disease state", "id": "GDS3869_30" }, { "dataset_id": "GDS3869", "description": "control (healthy, age-matched)", "sample_id": [ "GSM571741", "GSM571742", "GSM571743", "GSM571745", "GSM571746", "GSM571747", "GSM571748", "GSM571749", "GSM571750", "GSM571751", "GSM571752", "GSM571753", "GSM571720", "GSM571754", "GSM571758", "GSM571760" ], "type": "disease state", "id": "GDS3869_31" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3869", "version": 1.0, "instances": "41", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3869.tab", "compression": "gz" } ], [ [ "GDS387.tab" ], { "title": "Cardiac remodeling (Mu11K-A)", "description": "Evaluation of in vivo models of cardiac remodeling. Mice underwent transverse aortic constriction (TAC); myocardial infarction (MI) or sham operation. Left ventricle free wall and septum tissues examined 1 week later.", "type": "Expression profiling by array", "pubmed_id": "12902547", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE415", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS387", "description": "myocardial infarction", "sample_id": [ "GSM6118", "GSM6119", "GSM6120", "GSM6121", "GSM6122", "GSM6123" ], "type": "protocol", "id": "GDS387_1" }, { "dataset_id": "GDS387", "description": "transverse aortic constriction", "sample_id": [ "GSM6132", "GSM6133", "GSM6134", "GSM6135" ], "type": "protocol", "id": "GDS387_2" }, { "dataset_id": "GDS387", "description": "sham operation", "sample_id": [ "GSM6124", "GSM6125", "GSM6126", "GSM6127", "GSM6128", "GSM6129", "GSM6130", "GSM6131" ], "type": "protocol", "id": "GDS387_3" }, { "dataset_id": "GDS387", "description": "heart left ventricle free wall", "sample_id": [ "GSM6118", "GSM6119", "GSM6120", "GSM6124", "GSM6125", "GSM6126", "GSM6127", "GSM6132", "GSM6133" ], "type": "tissue", "id": "GDS387_4" }, { "dataset_id": "GDS387", "description": "heart intra-ventricular septum", "sample_id": [ "GSM6121", "GSM6122", "GSM6123", "GSM6128", "GSM6129", "GSM6130", "GSM6131", "GSM6134", "GSM6135" ], "type": "tissue", "id": "GDS387_5" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS387", "version": 1.0, "instances": "18", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS387.tab", "compression": "gz" } ], [ [ "GDS3871.tab" ], { "title": "Male and female genital imaginal discs during early morphogenesis: time course", "description": "Analysis of female or male genital discs dissected during early morphogenesis (L3, P6, or P20). In flies, the sex-determination hierarchy terminates in the doublesex (dsx) gene. Results provide insight into molecular mechanisms downstream of dsx underlying sex-specific differentiation of genitalia.", "type": "Expression profiling by array", "pubmed_id": "21343364", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE23344", "order": "none", "update_date": "Nov 10 2011", "subsets": [ { "dataset_id": "GDS3871", "description": "male", "sample_id": [ "GSM572821", "GSM572822", "GSM572823", "GSM572824", "GSM572829", "GSM572830", "GSM572831", "GSM572832", "GSM572837", "GSM572838", "GSM572839", "GSM572840" ], "type": "gender", "id": "GDS3871_1" }, { "dataset_id": "GDS3871", "description": "female", "sample_id": [ "GSM572817", "GSM572818", "GSM572819", "GSM572820", "GSM572825", "GSM572826", "GSM572827", "GSM572828", "GSM572833", "GSM572834", "GSM572835", "GSM572836" ], "type": "gender", "id": "GDS3871_2" }, { "dataset_id": "GDS3871", "description": "L3, late 3rd-instar larvae", "sample_id": [ "GSM572817", "GSM572818", "GSM572819", "GSM572820", "GSM572821", "GSM572822", "GSM572823", "GSM572824" ], "type": "development stage", "id": "GDS3871_3" }, { "dataset_id": "GDS3871", "description": "P6, pupae 6 hr APF", "sample_id": [ "GSM572825", "GSM572826", "GSM572827", "GSM572828", "GSM572829", "GSM572830", "GSM572831", "GSM572832" ], "type": "development stage", "id": "GDS3871_4" }, { "dataset_id": "GDS3871", "description": "P20, pupae 20 hr APF", "sample_id": [ "GSM572833", "GSM572834", "GSM572835", "GSM572836", "GSM572837", "GSM572838", "GSM572839", "GSM572840" ], "type": "development stage", "id": "GDS3871_5" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS3871", "version": 1.0, "instances": "24", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3871.tab", "compression": "gz" } ], [ [ "GDS3872.tab" ], { "title": "Xenograft ovarian tumor response to anti-cancer therapeutic MT19: time course", "description": "Analysis of ovarian xenograft tumors from nude mice inoculated with SKOV-3 cells then treated with anti-cancer agent MT19c. Xenograft tumors collected up to 30 days after initiation of MT19c treatment. Results provide insight into molecular mechanisms underlying ovarian xenograft tumor progression.", "type": "Expression profiling by array", "pubmed_id": "21781307", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE23616", "order": "none", "update_date": "Nov 10 2011", "subsets": [ { "dataset_id": "GDS3872", "description": "MT19C", "sample_id": [ "GSM579080", "GSM579081", "GSM579082", "GSM579083", "GSM579084", "GSM579085", "GSM579086", "GSM579087" ], "type": "agent", "id": "GDS3872_1" }, { "dataset_id": "GDS3872", "description": "untreated", "sample_id": [ "GSM579073", "GSM579074", "GSM579075", "GSM579076", "GSM579077", "GSM579078", "GSM579079" ], "type": "agent", "id": "GDS3872_2" }, { "dataset_id": "GDS3872", "description": "8 day", "sample_id": [ "GSM579073", "GSM579074", "GSM579075", "GSM579080", "GSM579081", "GSM579082" ], "type": "time", "id": "GDS3872_3" }, { "dataset_id": "GDS3872", "description": "16 day", "sample_id": [ "GSM579076", "GSM579077", "GSM579078", "GSM579083", "GSM579084", "GSM579085" ], "type": "time", "id": "GDS3872_4" }, { "dataset_id": "GDS3872", "description": "30 day", "sample_id": [ "GSM579079", "GSM579086", "GSM579087" ], "type": "time", "id": "GDS3872_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3872", "version": 1.0, "instances": "15", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3872.tab", "compression": "gz" } ], [ [ "GDS3873.tab" ], { "title": "Hypertension: heart", "description": "Analysis of heart from low-salt diet fed, 53-day old males representing hypertensive, salt-sensitive (S) Dahl strain and congenic strain S.LEW(10)x12x2x3x5. Results provide further insight into molecular basis of hypertension development.", "type": "Expression profiling by array", "pubmed_id": "21357277", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23643", "order": "none", "update_date": "Nov 14 2011", "subsets": [ { "dataset_id": "GDS3873", "description": "Dahl salt-sensitve", "sample_id": [ "GSM579999", "GSM580000", "GSM580001" ], "type": "strain", "id": "GDS3873_1" }, { "dataset_id": "GDS3873", "description": "S.LEW(10)x12x2x3x5 congenic", "sample_id": [ "GSM580002", "GSM580003", "GSM580004" ], "type": "strain", "id": "GDS3873_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3873", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3873.tab", "compression": "gz" } ], [ [ "GDS3874.tab" ], { "title": "Diabetic children: peripheral blood mononuclear cells (U133A)", "description": "Analysis of PBMCs from children (2-18 years) with newly diagnosed type 1 or 2 diabetes (T1D or T2D). One and 4 month samples were obtained from 20 of the T1D patients. Results provide insight into molecular mechanisms that distinguish T1D and T2D and those that are common to both forms of diabetes.", "type": "Expression profiling by array", "pubmed_id": "17595242", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "117", "value_type": "count", "reference_series": "GSE9006", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3874", "description": "healthy", "sample_id": [ "GSM228562", "GSM228563", "GSM228564", "GSM228565", "GSM228566", "GSM228567", "GSM228568", "GSM228569", "GSM228570", "GSM228571", "GSM228572", "GSM228573", "GSM228574", "GSM228575", "GSM228576", "GSM228577", "GSM228578", "GSM228579", "GSM228580", "GSM228581", "GSM228663", "GSM228664", "GSM228665", "GSM228666" ], "type": "disease state", "id": "GDS3874_1" }, { "dataset_id": "GDS3874", "description": "type 1 diabetes", "sample_id": [ "GSM228582", "GSM228583", "GSM228584", "GSM228585", "GSM228586", "GSM228587", "GSM228588", "GSM228589", "GSM228590", "GSM228591", "GSM228592", "GSM228593", "GSM228594", "GSM228595", "GSM228596", "GSM228597", "GSM228598", "GSM228599", "GSM228600", "GSM228601", "GSM228602", "GSM228603", "GSM228604", "GSM228605", "GSM228606", "GSM228607", "GSM228608", "GSM228609", "GSM228610", "GSM228611", "GSM228612", "GSM228613", "GSM228614", "GSM228615", "GSM228616", "GSM228617", "GSM228618", "GSM228619", "GSM228620", "GSM228621", "GSM228622", "GSM228623", "GSM228624", "GSM228625", "GSM228626", "GSM228627", "GSM228628", "GSM228629", "GSM228630", "GSM228631", "GSM228632", "GSM228633", "GSM228634", "GSM228635", "GSM228636", "GSM228637", "GSM228638", "GSM228639", "GSM228640", "GSM228641", "GSM228642", "GSM228643", "GSM228644", "GSM228645", "GSM228646", "GSM228647", "GSM228648", "GSM228649", "GSM228650", "GSM228651", "GSM228652", "GSM228653", "GSM228654", "GSM228655", "GSM228656", "GSM228657", "GSM228658", "GSM228659", "GSM228660", "GSM228661", "GSM228662" ], "type": "disease state", "id": "GDS3874_2" }, { "dataset_id": "GDS3874", "description": "type 2 diabetes", "sample_id": [ "GSM228667", "GSM228668", "GSM228669", "GSM228670", "GSM228671", "GSM228672", "GSM228673", "GSM228674", "GSM228675", "GSM228676", "GSM228677", "GSM228678" ], "type": "disease state", "id": "GDS3874_3" }, { "dataset_id": "GDS3874", "description": "control", "sample_id": [ "GSM228562", "GSM228563", "GSM228565", "GSM228566", "GSM228567", "GSM228570", "GSM228571", "GSM228574", "GSM228575", "GSM228576", "GSM228579", "GSM228580", "GSM228581", "GSM228666", "GSM228564", "GSM228568", "GSM228569", "GSM228572", "GSM228573", "GSM228577", "GSM228578", "GSM228663", "GSM228664", "GSM228665" ], "type": "time", "id": "GDS3874_4" }, { "dataset_id": "GDS3874", "description": "0 month, new", "sample_id": [ "GSM228583", "GSM228588", "GSM228589", "GSM228591", "GSM228597", "GSM228601", "GSM228604", "GSM228608", "GSM228628", "GSM228634", "GSM228642", "GSM228645", "GSM228646", "GSM228652", "GSM228656", "GSM228582", "GSM228585", "GSM228587", "GSM228590", "GSM228609", "GSM228613", "GSM228616", "GSM228655", "GSM228659", "GSM228662", "GSM228586", "GSM228592", "GSM228594", "GSM228598", "GSM228612", "GSM228622", "GSM228631", "GSM228633", "GSM228639", "GSM228649", "GSM228660", "GSM228661", "GSM228584", "GSM228593", "GSM228607", "GSM228619", "GSM228625", "GSM228637", "GSM228670", "GSM228671", "GSM228672", "GSM228675", "GSM228676", "GSM228674", "GSM228667", "GSM228668", "GSM228669", "GSM228673", "GSM228677", "GSM228678" ], "type": "time", "id": "GDS3874_5" }, { "dataset_id": "GDS3874", "description": "1 month", "sample_id": [ "GSM228595", "GSM228599", "GSM228602", "GSM228605", "GSM228610", "GSM228614", "GSM228617", "GSM228620", "GSM228623", "GSM228626", "GSM228629", "GSM228632", "GSM228635", "GSM228640", "GSM228643", "GSM228647", "GSM228650", "GSM228653", "GSM228657" ], "type": "time", "id": "GDS3874_6" }, { "dataset_id": "GDS3874", "description": "4 months", "sample_id": [ "GSM228596", "GSM228600", "GSM228603", "GSM228606", "GSM228611", "GSM228615", "GSM228618", "GSM228621", "GSM228624", "GSM228627", "GSM228630", "GSM228636", "GSM228638", "GSM228641", "GSM228644", "GSM228648", "GSM228651", "GSM228654", "GSM228658" ], "type": "time", "id": "GDS3874_7" }, { "dataset_id": "GDS3874", "description": "female", "sample_id": [ "GSM228562", "GSM228563", "GSM228565", "GSM228566", "GSM228567", "GSM228570", "GSM228571", "GSM228574", "GSM228575", "GSM228576", "GSM228579", "GSM228580", "GSM228581", "GSM228582", "GSM228583", "GSM228585", "GSM228587", "GSM228588", "GSM228589", "GSM228590", "GSM228591", "GSM228595", "GSM228596", "GSM228597", "GSM228599", "GSM228600", "GSM228601", "GSM228602", "GSM228603", "GSM228604", "GSM228608", "GSM228609", "GSM228613", "GSM228614", "GSM228615", "GSM228616", "GSM228626", "GSM228627", "GSM228628", "GSM228634", "GSM228640", "GSM228641", "GSM228642", "GSM228643", "GSM228644", "GSM228645", "GSM228646", "GSM228650", "GSM228651", "GSM228652", "GSM228653", "GSM228654", "GSM228655", "GSM228656", "GSM228657", "GSM228658", "GSM228659", "GSM228662", "GSM228666", "GSM228670", "GSM228671", "GSM228672", "GSM228674", "GSM228675", "GSM228676" ], "type": "gender", "id": "GDS3874_8" }, { "dataset_id": "GDS3874", "description": "male", "sample_id": [ "GSM228564", "GSM228568", "GSM228569", "GSM228572", "GSM228573", "GSM228577", "GSM228578", "GSM228584", "GSM228586", "GSM228592", "GSM228593", "GSM228594", "GSM228598", "GSM228605", "GSM228606", "GSM228607", "GSM228610", "GSM228611", "GSM228612", "GSM228617", "GSM228618", "GSM228619", "GSM228620", "GSM228621", "GSM228622", "GSM228623", "GSM228624", "GSM228625", "GSM228629", "GSM228630", "GSM228631", "GSM228632", "GSM228633", "GSM228635", "GSM228636", "GSM228637", "GSM228638", "GSM228639", "GSM228647", "GSM228648", "GSM228649", "GSM228660", "GSM228661", "GSM228663", "GSM228664", "GSM228665", "GSM228667", "GSM228668", "GSM228669", "GSM228673", "GSM228677", "GSM228678" ], "type": "gender", "id": "GDS3874_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3874", "version": 1.0, "instances": "117", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3874.tab", "compression": "gz" } ], [ [ "GDS3875.tab" ], { "title": "Diabetic children: peripheral blood mononuclear cells (U133B)", "description": "Analysis of PBMCs from children (2-18 years) with newly diagnosed type 1 or 2 diabetes (T1D or T2D). One and 4 month samples were obtained from 20 of the T1D patients. Results provide insight into molecular mechanisms that distinguish T1D and T2D and those that are common to both forms of diabetes.", "type": "Expression profiling by array", "pubmed_id": "17595242", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "117", "value_type": "count", "reference_series": "GSE9006", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3875", "description": "healthy", "sample_id": [ "GSM254177", "GSM254178", "GSM254179", "GSM254180", "GSM254181", "GSM254182", "GSM254183", "GSM254277", "GSM254278", "GSM254279", "GSM254280", "GSM254281", "GSM254282", "GSM254283", "GSM254284", "GSM254285", "GSM254286", "GSM254287", "GSM254288", "GSM254289", "GSM254290", "GSM254291", "GSM254292", "GSM254293" ], "type": "disease state", "id": "GDS3875_1" }, { "dataset_id": "GDS3875", "description": "type 1 diabetes", "sample_id": [ "GSM254197", "GSM254201", "GSM254204", "GSM254207", "GSM254212", "GSM254216", "GSM254219", "GSM254222", "GSM254225", "GSM254228", "GSM254231", "GSM254234", "GSM254237", "GSM254242", "GSM254245", "GSM254249", "GSM254252", "GSM254255", "GSM254259", "GSM254198", "GSM254202", "GSM254205", "GSM254208", "GSM254213", "GSM254217", "GSM254220", "GSM254223", "GSM254226", "GSM254229", "GSM254232", "GSM254238", "GSM254240", "GSM254243", "GSM254246", "GSM254250", "GSM254253", "GSM254256", "GSM254260", "GSM254184", "GSM254185", "GSM254186", "GSM254187", "GSM254188", "GSM254189", "GSM254190", "GSM254191", "GSM254192", "GSM254193", "GSM254194", "GSM254195", "GSM254196", "GSM254199", "GSM254200", "GSM254203", "GSM254206", "GSM254209", "GSM254210", "GSM254211", "GSM254214", "GSM254215", "GSM254218", "GSM254221", "GSM254224", "GSM254227", "GSM254230", "GSM254233", "GSM254235", "GSM254236", "GSM254239", "GSM254241", "GSM254244", "GSM254247", "GSM254248", "GSM254251", "GSM254254", "GSM254257", "GSM254258", "GSM254261", "GSM254262", "GSM254263", "GSM254264" ], "type": "disease state", "id": "GDS3875_2" }, { "dataset_id": "GDS3875", "description": "type 2 diabetes", "sample_id": [ "GSM254265", "GSM254266", "GSM254267", "GSM254268", "GSM254269", "GSM254270", "GSM254271", "GSM254272", "GSM254273", "GSM254274", "GSM254275", "GSM254276" ], "type": "disease state", "id": "GDS3875_3" }, { "dataset_id": "GDS3875", "description": "control", "sample_id": [ "GSM254177", "GSM254178", "GSM254179", "GSM254180", "GSM254181", "GSM254182", "GSM254183", "GSM254277", "GSM254278", "GSM254279", "GSM254280", "GSM254281", "GSM254282", "GSM254283", "GSM254284", "GSM254285", "GSM254286", "GSM254287", "GSM254288", "GSM254289", "GSM254290", "GSM254291", "GSM254292", "GSM254293" ], "type": "time", "id": "GDS3875_4" }, { "dataset_id": "GDS3875", "description": "0 month, new", "sample_id": [ "GSM254185", "GSM254188", "GSM254190", "GSM254191", "GSM254193", "GSM254194", "GSM254196", "GSM254199", "GSM254200", "GSM254203", "GSM254206", "GSM254210", "GSM254214", "GSM254224", "GSM254230", "GSM254233", "GSM254235", "GSM254236", "GSM254241", "GSM254244", "GSM254247", "GSM254248", "GSM254251", "GSM254254", "GSM254258", "GSM254262", "GSM254263", "GSM254184", "GSM254186", "GSM254187", "GSM254189", "GSM254192", "GSM254195", "GSM254209", "GSM254211", "GSM254215", "GSM254218", "GSM254221", "GSM254227", "GSM254239", "GSM254257", "GSM254261", "GSM254264", "GSM254265", "GSM254266", "GSM254267", "GSM254268", "GSM254269", "GSM254270", "GSM254271", "GSM254273", "GSM254274", "GSM254272", "GSM254275", "GSM254276" ], "type": "time", "id": "GDS3875_5" }, { "dataset_id": "GDS3875", "description": "1 month", "sample_id": [ "GSM254197", "GSM254201", "GSM254204", "GSM254207", "GSM254212", "GSM254216", "GSM254219", "GSM254222", "GSM254225", "GSM254228", "GSM254231", "GSM254234", "GSM254237", "GSM254242", "GSM254245", "GSM254249", "GSM254252", "GSM254255", "GSM254259" ], "type": "time", "id": "GDS3875_6" }, { "dataset_id": "GDS3875", "description": "4 months", "sample_id": [ "GSM254198", "GSM254202", "GSM254205", "GSM254208", "GSM254213", "GSM254217", "GSM254220", "GSM254223", "GSM254226", "GSM254229", "GSM254232", "GSM254238", "GSM254240", "GSM254243", "GSM254246", "GSM254250", "GSM254253", "GSM254256", "GSM254260" ], "type": "time", "id": "GDS3875_7" }, { "dataset_id": "GDS3875", "description": "female", "sample_id": [ "GSM254177", "GSM254179", "GSM254180", "GSM254182", "GSM254183", "GSM254184", "GSM254185", "GSM254187", "GSM254189", "GSM254190", "GSM254191", "GSM254192", "GSM254193", "GSM254197", "GSM254198", "GSM254199", "GSM254201", "GSM254202", "GSM254203", "GSM254204", "GSM254205", "GSM254206", "GSM254210", "GSM254211", "GSM254215", "GSM254216", "GSM254217", "GSM254218", "GSM254228", "GSM254229", "GSM254230", "GSM254236", "GSM254242", "GSM254243", "GSM254244", "GSM254245", "GSM254246", "GSM254247", "GSM254248", "GSM254252", "GSM254253", "GSM254254", "GSM254255", "GSM254256", "GSM254257", "GSM254258", "GSM254259", "GSM254260", "GSM254261", "GSM254264", "GSM254268", "GSM254269", "GSM254270", "GSM254272", "GSM254273", "GSM254274", "GSM254277", "GSM254278", "GSM254281", "GSM254282", "GSM254284", "GSM254286", "GSM254290", "GSM254291", "GSM254293" ], "type": "gender", "id": "GDS3875_8" }, { "dataset_id": "GDS3875", "description": "male", "sample_id": [ "GSM254178", "GSM254181", "GSM254186", "GSM254188", "GSM254194", "GSM254195", "GSM254196", "GSM254200", "GSM254207", "GSM254208", "GSM254209", "GSM254212", "GSM254213", "GSM254214", "GSM254219", "GSM254220", "GSM254221", "GSM254222", "GSM254223", "GSM254224", "GSM254225", "GSM254226", "GSM254227", "GSM254231", "GSM254232", "GSM254233", "GSM254234", "GSM254235", "GSM254237", "GSM254238", "GSM254239", "GSM254240", "GSM254241", "GSM254249", "GSM254250", "GSM254251", "GSM254262", "GSM254263", "GSM254265", "GSM254266", "GSM254267", "GSM254271", "GSM254275", "GSM254276", "GSM254279", "GSM254280", "GSM254283", "GSM254285", "GSM254287", "GSM254288", "GSM254289", "GSM254292" ], "type": "gender", "id": "GDS3875_9" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS3875", "version": 1.0, "instances": "117", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3875.tab", "compression": "gz" } ], [ [ "GDS3876.tab" ], { "title": "Obese patients with and without type 2 diabetes: liver", "description": "Analysis of liver biopsies from 13 obese subjects (9 with type 2 diabetes, T2D). Hepatic lipid accumulation contributes to insulin resistance, hyperglycemia, and hyperlipidemia. Results provide insight into molecular mechanisms related to hepatic lipid accumulation in obese patients with or w/o T2D.", "type": "Expression profiling by array", "pubmed_id": "19549744", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE15653", "order": "none", "update_date": "Dec 09 2011", "subsets": [ { "dataset_id": "GDS3876", "description": "lean", "sample_id": [ "GSM391693", "GSM391694", "GSM391695", "GSM391696", "GSM391697" ], "type": "individual", "id": "GDS3876_1" }, { "dataset_id": "GDS3876", "description": "no T2D", "sample_id": [ "GSM391698", "GSM391699", "GSM391700", "GSM391701", "GSM391693", "GSM391694", "GSM391695", "GSM391696", "GSM391697" ], "type": "disease state", "id": "GDS3876_2" }, { "dataset_id": "GDS3876", "description": "T2D well-controlled", "sample_id": [ "GSM391702", "GSM391703", "GSM391704", "GSM391705", "GSM391706" ], "type": "disease state", "id": "GDS3876_3" }, { "dataset_id": "GDS3876", "description": "T2D poorly-controlled", "sample_id": [ "GSM391707", "GSM391708", "GSM391709", "GSM391710" ], "type": "disease state", "id": "GDS3876_4" }, { "dataset_id": "GDS3876", "description": "male", "sample_id": [ "GSM391700", "GSM391703", "GSM391707", "GSM391709" ], "type": "gender", "id": "GDS3876_5" }, { "dataset_id": "GDS3876", "description": "female", "sample_id": [ "GSM391693", "GSM391694", "GSM391695", "GSM391696", "GSM391697", "GSM391698", "GSM391699", "GSM391701", "GSM391702", "GSM391704", "GSM391705", "GSM391706", "GSM391708", "GSM391710" ], "type": "gender", "id": "GDS3876_6" }, { "dataset_id": "GDS3876", "description": "obese", "sample_id": [ "GSM391698", "GSM391699", "GSM391700", "GSM391701", "GSM391702", "GSM391703", "GSM391704", "GSM391705", "GSM391706", "GSM391707", "GSM391708", "GSM391709", "GSM391710" ], "type": "individual", "id": "GDS3876_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3876", "version": 1.0, "instances": "18", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3876.tab", "compression": "gz" } ], [ [ "GDS388.tab" ], { "title": "Cardiac remodeling (Mu11K-B)", "description": "Evaluation of in vivo models of cardiac remodeling. Mice underwent transverse aortic constriction (TAC); myocardial infarction (MI) or sham operation. Left ventricle free wall and septum tissues examined 1 week later.", "type": "Expression profiling by array", "pubmed_id": "12902547", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE415", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS388", "description": "myocardial infarction", "sample_id": [ "GSM6136", "GSM6137", "GSM6138", "GSM6139", "GSM6140", "GSM6141" ], "type": "protocol", "id": "GDS388_1" }, { "dataset_id": "GDS388", "description": "transverse aortic constriction", "sample_id": [ "GSM6150", "GSM6151", "GSM6152", "GSM6153" ], "type": "protocol", "id": "GDS388_2" }, { "dataset_id": "GDS388", "description": "sham operation", "sample_id": [ "GSM6142", "GSM6143", "GSM6144", "GSM6145", "GSM6146", "GSM6147", "GSM6148", "GSM6149" ], "type": "protocol", "id": "GDS388_3" }, { "dataset_id": "GDS388", "description": "heart left ventricle free wall", "sample_id": [ "GSM6136", "GSM6137", "GSM6138", "GSM6142", "GSM6143", "GSM6144", "GSM6145", "GSM6150", "GSM6151" ], "type": "tissue", "id": "GDS388_4" }, { "dataset_id": "GDS388", "description": "heart intra-ventricular septum", "sample_id": [ "GSM6139", "GSM6140", "GSM6141", "GSM6146", "GSM6147", "GSM6148", "GSM6149", "GSM6152", "GSM6153" ], "type": "tissue", "id": "GDS388_5" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS388", "version": 1.0, "instances": "18", "variables": 6163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS388.tab", "compression": "gz" } ], [ [ "GDS3880.tab" ], { "title": "Prolonged exercise training effect on skeletal muscle from type 2 diabetes subjects", "description": "Analysis of skeletal muscle biopsies from insulin-treated type 2 diabetes (T2D) subjects before/after exercise training, pre-diabetics and healthy controls. Results provide insight into the molecular basis of T2D, the role of mitochondrial dysfunction, and the effects of prolonged exercise training.", "type": "Expression profiling by array", "pubmed_id": "22802091", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE19420", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3880", "description": "type 2 diabetes", "sample_id": [ "GSM482936", "GSM482937", "GSM482940", "GSM482941", "GSM482942", "GSM482943", "GSM482946", "GSM482949", "GSM482950", "GSM482951", "GSM482952", "GSM482954", "GSM482955", "GSM482956", "GSM482964", "GSM482965", "GSM482972", "GSM482973" ], "type": "disease state", "id": "GDS3880_1" }, { "dataset_id": "GDS3880", "description": "pre-diabetes", "sample_id": [ "GSM482933", "GSM482935", "GSM482939", "GSM482944", "GSM482953", "GSM482959", "GSM482962", "GSM482963", "GSM482966", "GSM482967", "GSM482971", "GSM482969" ], "type": "disease state", "id": "GDS3880_2" }, { "dataset_id": "GDS3880", "description": "normoglycemic control", "sample_id": [ "GSM482934", "GSM482938", "GSM482945", "GSM482947", "GSM482948", "GSM482957", "GSM482958", "GSM482960", "GSM482961", "GSM482968", "GSM482970", "GSM482974" ], "type": "disease state", "id": "GDS3880_3" }, { "dataset_id": "GDS3880", "description": "0 weeks exercise", "sample_id": [ "GSM482936", "GSM482940", "GSM482942", "GSM482946", "GSM482949", "GSM482951", "GSM482954", "GSM482955", "GSM482964", "GSM482972" ], "type": "protocol", "id": "GDS3880_4" }, { "dataset_id": "GDS3880", "description": "52 weeks exercise", "sample_id": [ "GSM482937", "GSM482941", "GSM482943", "GSM482950", "GSM482952", "GSM482956", "GSM482965", "GSM482973" ], "type": "protocol", "id": "GDS3880_5" }, { "dataset_id": "GDS3880", "description": "n/a", "sample_id": [ "GSM482933", "GSM482934", "GSM482935", "GSM482938", "GSM482939", "GSM482944", "GSM482945", "GSM482947", "GSM482948", "GSM482953", "GSM482957", "GSM482958", "GSM482959", "GSM482960", "GSM482961", "GSM482962", "GSM482963", "GSM482966", "GSM482967", "GSM482968", "GSM482969", "GSM482970", "GSM482971", "GSM482974" ], "type": "protocol", "id": "GDS3880_6" }, { "dataset_id": "GDS3880", "description": "BA26", "sample_id": [ "GSM482933" ], "type": "individual", "id": "GDS3880_7" }, { "dataset_id": "GDS3880", "description": "BE16", "sample_id": [ "GSM482934" ], "type": "individual", "id": "GDS3880_8" }, { "dataset_id": "GDS3880", "description": "BL21", "sample_id": [ "GSM482935" ], "type": "individual", "id": "GDS3880_9" }, { "dataset_id": "GDS3880", "description": "CA07", "sample_id": [ "GSM482936", "GSM482937" ], "type": "individual", "id": "GDS3880_10" }, { "dataset_id": "GDS3880", "description": "DE25", "sample_id": [ "GSM482938" ], "type": "individual", "id": "GDS3880_11" }, { "dataset_id": "GDS3880", "description": "DO15", "sample_id": [ "GSM482939" ], "type": "individual", "id": "GDS3880_12" }, { "dataset_id": "GDS3880", "description": "EI03", "sample_id": [ "GSM482940", "GSM482941" ], "type": "individual", "id": "GDS3880_13" }, { "dataset_id": "GDS3880", "description": "EN04", "sample_id": [ "GSM482942", "GSM482943" ], "type": "individual", "id": "GDS3880_14" }, { "dataset_id": "GDS3880", "description": "GA01", "sample_id": [ "GSM482944" ], "type": "individual", "id": "GDS3880_15" }, { "dataset_id": "GDS3880", "description": "GL33", "sample_id": [ "GSM482945" ], "type": "individual", "id": "GDS3880_16" }, { "dataset_id": "GDS3880", "description": "GO11", "sample_id": [ "GSM482946" ], "type": "individual", "id": "GDS3880_17" }, { "dataset_id": "GDS3880", "description": "GO32", "sample_id": [ "GSM482947" ], "type": "individual", "id": "GDS3880_18" }, { "dataset_id": "GDS3880", "description": "GR31", "sample_id": [ "GSM482948" ], "type": "individual", "id": "GDS3880_19" }, { "dataset_id": "GDS3880", "description": "HE08", "sample_id": [ "GSM482949", "GSM482950" ], "type": "individual", "id": "GDS3880_20" }, { "dataset_id": "GDS3880", "description": "HO02", "sample_id": [ "GSM482951", "GSM482952" ], "type": "individual", "id": "GDS3880_21" }, { "dataset_id": "GDS3880", "description": "HO07", "sample_id": [ "GSM482953" ], "type": "individual", "id": "GDS3880_22" }, { "dataset_id": "GDS3880", "description": "KA06", "sample_id": [ "GSM482954" ], "type": "individual", "id": "GDS3880_23" }, { "dataset_id": "GDS3880", "description": "KR10", "sample_id": [ "GSM482955", "GSM482956" ], "type": "individual", "id": "GDS3880_24" }, { "dataset_id": "GDS3880", "description": "ME11", "sample_id": [ "GSM482957" ], "type": "individual", "id": "GDS3880_25" }, { "dataset_id": "GDS3880", "description": "MR23", "sample_id": [ "GSM482958" ], "type": "individual", "id": "GDS3880_26" }, { "dataset_id": "GDS3880", "description": "NI24", "sample_id": [ "GSM482959" ], "type": "individual", "id": "GDS3880_27" }, { "dataset_id": "GDS3880", "description": "NW30", "sample_id": [ "GSM482960" ], "type": "individual", "id": "GDS3880_28" }, { "dataset_id": "GDS3880", "description": "ON04", "sample_id": [ "GSM482961" ], "type": "individual", "id": "GDS3880_29" }, { "dataset_id": "GDS3880", "description": "OP10", "sample_id": [ "GSM482962" ], "type": "individual", "id": "GDS3880_30" }, { "dataset_id": "GDS3880", "description": "PO14", "sample_id": [ "GSM482963" ], "type": "individual", "id": "GDS3880_31" }, { "dataset_id": "GDS3880", "description": "SL01", "sample_id": [ "GSM482964", "GSM482965" ], "type": "individual", "id": "GDS3880_32" }, { "dataset_id": "GDS3880", "description": "SL22", "sample_id": [ "GSM482966" ], "type": "individual", "id": "GDS3880_33" }, { "dataset_id": "GDS3880", "description": "SW17", "sample_id": [ "GSM482967" ], "type": "individual", "id": "GDS3880_34" }, { "dataset_id": "GDS3880", "description": "TI05", "sample_id": [ "GSM482968" ], "type": "individual", "id": "GDS3880_35" }, { "dataset_id": "GDS3880", "description": "TM18", "sample_id": [ "GSM482969" ], "type": "individual", "id": "GDS3880_36" }, { "dataset_id": "GDS3880", "description": "VB09", "sample_id": [ "GSM482970" ], "type": "individual", "id": "GDS3880_37" }, { "dataset_id": "GDS3880", "description": "VE02", "sample_id": [ "GSM482971" ], "type": "individual", "id": "GDS3880_38" }, { "dataset_id": "GDS3880", "description": "VH05", "sample_id": [ "GSM482972", "GSM482973" ], "type": "individual", "id": "GDS3880_39" }, { "dataset_id": "GDS3880", "description": "VI29", "sample_id": [ "GSM482974" ], "type": "individual", "id": "GDS3880_40" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3880", "version": 1.0, "instances": "42", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3880.tab", "compression": "gz" } ], [ [ "GDS3881.tab" ], { "title": "Bariatric surgery effect on obesity-related type 2 diabetes: whole blood", "description": "Analysis of whole blood from 11 obese subjects with type 2 diabetes (T2D), before and after bariatric surgery. Bariatric surgery resulted in weight loss and improved hyperglycemia for all subjects. Results provide insight into molecular basis for T2D susceptibility and/or therapeutic response.", "type": "Expression profiling by array", "pubmed_id": "21423737", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE19790", "order": "none", "update_date": "Dec 09 2011", "subsets": [ { "dataset_id": "GDS3881", "description": "pre surgery", "sample_id": [ "GSM494319", "GSM494321", "GSM494323", "GSM494325", "GSM494327", "GSM494329", "GSM494331", "GSM494333", "GSM494335", "GSM494337", "GSM494339" ], "type": "protocol", "id": "GDS3881_1" }, { "dataset_id": "GDS3881", "description": "post surgery", "sample_id": [ "GSM494320", "GSM494322", "GSM494324", "GSM494326", "GSM494328", "GSM494330", "GSM494332", "GSM494334", "GSM494336", "GSM494338", "GSM494340" ], "type": "protocol", "id": "GDS3881_2" }, { "dataset_id": "GDS3881", "description": "male", "sample_id": [ "GSM494319", "GSM494320", "GSM494325", "GSM494326", "GSM494327", "GSM494328", "GSM494329", "GSM494330", "GSM494331", "GSM494332", "GSM494337", "GSM494338" ], "type": "gender", "id": "GDS3881_3" }, { "dataset_id": "GDS3881", "description": "female", "sample_id": [ "GSM494321", "GSM494322", "GSM494323", "GSM494324", "GSM494333", "GSM494334", "GSM494335", "GSM494336", "GSM494339", "GSM494340" ], "type": "gender", "id": "GDS3881_4" }, { "dataset_id": "GDS3881", "description": "Subject 004", "sample_id": [ "GSM494319", "GSM494320" ], "type": "individual", "id": "GDS3881_5" }, { "dataset_id": "GDS3881", "description": "Subject 005", "sample_id": [ "GSM494321", "GSM494322" ], "type": "individual", "id": "GDS3881_6" }, { "dataset_id": "GDS3881", "description": "Subject 006", "sample_id": [ "GSM494323", "GSM494324" ], "type": "individual", "id": "GDS3881_7" }, { "dataset_id": "GDS3881", "description": "Subject 012", "sample_id": [ "GSM494325", "GSM494326" ], "type": "individual", "id": "GDS3881_8" }, { "dataset_id": "GDS3881", "description": "Subject 015", "sample_id": [ "GSM494327", "GSM494328" ], "type": "individual", "id": "GDS3881_9" }, { "dataset_id": "GDS3881", "description": "Subject 007", "sample_id": [ "GSM494329", "GSM494330" ], "type": "individual", "id": "GDS3881_10" }, { "dataset_id": "GDS3881", "description": "Subject 501", "sample_id": [ "GSM494331", "GSM494332" ], "type": "individual", "id": "GDS3881_11" }, { "dataset_id": "GDS3881", "description": "Subject 503", "sample_id": [ "GSM494333", "GSM494334" ], "type": "individual", "id": "GDS3881_12" }, { "dataset_id": "GDS3881", "description": "Subject 008", "sample_id": [ "GSM494335", "GSM494336" ], "type": "individual", "id": "GDS3881_13" }, { "dataset_id": "GDS3881", "description": "Subject 013", "sample_id": [ "GSM494337", "GSM494338" ], "type": "individual", "id": "GDS3881_14" }, { "dataset_id": "GDS3881", "description": "Subject 014", "sample_id": [ "GSM494339", "GSM494340" ], "type": "individual", "id": "GDS3881_15" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3881", "version": 1.0, "instances": "22", "variables": 43620, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3881.tab", "compression": "gz" } ], [ [ "GDS3882.tab" ], { "title": "Type 2 diabetic pancreatic islets of Langerhans", "description": "Analysis of islet of Langerhans isolated from type 2 diabetic (T2D) organ donors. Phosphoinositide 3-kinases (PI3Ks) are critical regulators of pancreatic \u03b2 cell mass and survival. Results provide insight into a role for class II PI3Ks in insulin secretion in pancreatic \u03b2 cells.", "type": "Expression profiling by array", "pubmed_id": "21127054", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE25724", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3882", "description": "non-diabetic", "sample_id": [ "GSM631755", "GSM631756", "GSM631757", "GSM631758", "GSM631759", "GSM631760", "GSM631761" ], "type": "disease state", "id": "GDS3882_1" }, { "dataset_id": "GDS3882", "description": "type 2 diabetic", "sample_id": [ "GSM631762", "GSM631763", "GSM631764", "GSM631765", "GSM631766", "GSM631767" ], "type": "disease state", "id": "GDS3882_2" }, { "dataset_id": "GDS3882", "description": "33 years", "sample_id": [ "GSM631756" ], "type": "age", "id": "GDS3882_3" }, { "dataset_id": "GDS3882", "description": "47 years", "sample_id": [ "GSM631755", "GSM631757" ], "type": "age", "id": "GDS3882_4" }, { "dataset_id": "GDS3882", "description": "54 years", "sample_id": [ "GSM631758", "GSM631766" ], "type": "age", "id": "GDS3882_5" }, { "dataset_id": "GDS3882", "description": "66 years", "sample_id": [ "GSM631767" ], "type": "age", "id": "GDS3882_6" }, { "dataset_id": "GDS3882", "description": "73 years", "sample_id": [ "GSM631761", "GSM631764" ], "type": "age", "id": "GDS3882_7" }, { "dataset_id": "GDS3882", "description": "75 years", "sample_id": [ "GSM631765" ], "type": "age", "id": "GDS3882_8" }, { "dataset_id": "GDS3882", "description": "76 years", "sample_id": [ "GSM631759", "GSM631763" ], "type": "age", "id": "GDS3882_9" }, { "dataset_id": "GDS3882", "description": "77 years", "sample_id": [ "GSM631760" ], "type": "age", "id": "GDS3882_10" }, { "dataset_id": "GDS3882", "description": "79 years", "sample_id": [ "GSM631762" ], "type": "age", "id": "GDS3882_11" }, { "dataset_id": "GDS3882", "description": "male", "sample_id": [ "GSM631755", "GSM631756", "GSM631757", "GSM631758", "GSM631762", "GSM631763", "GSM631767" ], "type": "gender", "id": "GDS3882_12" }, { "dataset_id": "GDS3882", "description": "female", "sample_id": [ "GSM631759", "GSM631760", "GSM631761", "GSM631764", "GSM631765", "GSM631766" ], "type": "gender", "id": "GDS3882_13" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3882", "version": 1.0, "instances": "13", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3882.tab", "compression": "gz" } ], [ [ "GDS3883.tab" ], { "title": "Type 2 diabetes and role of hepatokines", "description": "Analysis of percutaneous needle liver biopsies from 10 people with type 2 diabetes (T2D) and 7 normal subjects. The liver has a central role in glucose homeostasis and is a major site of secretory protein production. Results provide insight into the role of hepatokines in T2D insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "21035759", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE23343", "order": "none", "update_date": "Dec 11 2011", "subsets": [ { "dataset_id": "GDS3883", "description": "type 2 diabetes", "sample_id": [ "GSM572807", "GSM572808", "GSM572809", "GSM572810", "GSM572811", "GSM572812", "GSM572813", "GSM572814", "GSM572815", "GSM572816" ], "type": "disease state", "id": "GDS3883_1" }, { "dataset_id": "GDS3883", "description": "normal glucose tolerance", "sample_id": [ "GSM572800", "GSM572801", "GSM572802", "GSM572803", "GSM572804", "GSM572805", "GSM572806" ], "type": "disease state", "id": "GDS3883_2" }, { "dataset_id": "GDS3883", "description": "male", "sample_id": [ "GSM572800", "GSM572801", "GSM572804", "GSM572805", "GSM572808", "GSM572809", "GSM572811", "GSM572813", "GSM572815", "GSM572816" ], "type": "gender", "id": "GDS3883_3" }, { "dataset_id": "GDS3883", "description": "female", "sample_id": [ "GSM572802", "GSM572803", "GSM572806", "GSM572807", "GSM572810", "GSM572812", "GSM572814" ], "type": "gender", "id": "GDS3883_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3883", "version": 1.0, "instances": "17", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3883.tab", "compression": "gz" } ], [ [ "GDS3884.tab" ], { "title": "Type 2 diabetic and insulin-resistant but normoglycemic cohorts: skeletal muscle", "description": "Analysis of quadriceps muscle from type 2 diabetes (T2D) patients and from normoglycemic but insulin-resistant subjects with a parental family history of T2D. Insulin resistance in skeletal muscle is a key phenotype of T2D. Results provide insight into the molecular basis of this insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "21393865", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "count", "reference_series": "GSE25462", "order": "none", "update_date": "Dec 11 2011", "subsets": [ { "dataset_id": "GDS3884", "description": "type 2 diabetes", "sample_id": [ "GSM624961", "GSM624970", "GSM624962", "GSM624963", "GSM624964", "GSM624965", "GSM624966", "GSM624967", "GSM624968", "GSM624969" ], "type": "disease state", "id": "GDS3884_1" }, { "dataset_id": "GDS3884", "description": "normoglycemia (FH-)", "sample_id": [ "GSM624925", "GSM624934", "GSM624935", "GSM624936", "GSM624937", "GSM624971", "GSM624973", "GSM624926", "GSM624927", "GSM624928", "GSM624929", "GSM624930", "GSM624931", "GSM624932", "GSM624933" ], "type": "disease state", "id": "GDS3884_2" }, { "dataset_id": "GDS3884", "description": "normoglycemia (FH+)", "sample_id": [ "GSM624938", "GSM624947", "GSM624948", "GSM624949", "GSM624950", "GSM624951", "GSM624952", "GSM624953", "GSM624954", "GSM624955", "GSM624956", "GSM624939", "GSM624957", "GSM624958", "GSM624959", "GSM624960", "GSM624972", "GSM624974", "GSM624940", "GSM624941", "GSM624942", "GSM624943", "GSM624944", "GSM624945", "GSM624946" ], "type": "disease state", "id": "GDS3884_3" }, { "dataset_id": "GDS3884", "description": "female", "sample_id": [ "GSM624925", "GSM624927", "GSM624929", "GSM624930", "GSM624931", "GSM624935", "GSM624936", "GSM624937", "GSM624938", "GSM624940", "GSM624941", "GSM624942", "GSM624943", "GSM624945", "GSM624946", "GSM624949", "GSM624951", "GSM624952", "GSM624955", "GSM624956", "GSM624957", "GSM624962", "GSM624963", "GSM624967", "GSM624968", "GSM624969", "GSM624970", "GSM624974" ], "type": "gender", "id": "GDS3884_4" }, { "dataset_id": "GDS3884", "description": "male", "sample_id": [ "GSM624926", "GSM624928", "GSM624932", "GSM624933", "GSM624934", "GSM624939", "GSM624944", "GSM624947", "GSM624948", "GSM624950", "GSM624953", "GSM624954", "GSM624958", "GSM624959", "GSM624960", "GSM624961", "GSM624964", "GSM624965", "GSM624966", "GSM624971", "GSM624972", "GSM624973" ], "type": "gender", "id": "GDS3884_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3884", "version": 1.0, "instances": "50", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3884.tab", "compression": "gz" } ], [ [ "GDS3885.tab" ], { "title": "Glioblastoma stem-like cell lines, glioblastomas, and glioma cell lines", "description": "Analysis of glioblastoma stem-like (GS) cell lines, corresponding glioblastoma primary tumors, conventional glioma cell lines, and GS neurospheres. Results provide insight into cell lines recapitulating transcriptional aspects of glioblastomas, thereby allowing identification of therapeutic targets.", "type": "Expression profiling by array", "pubmed_id": [ "21294158", "18037961", "25543125" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "92", "value_type": "transformed count", "reference_series": "GSE23806", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS3885", "description": "conventional glioma cell line", "sample_id": [ "GSM587155", "GSM587156", "GSM587157", "GSM587158", "GSM587159", "GSM587160", "GSM587161", "GSM587162", "GSM587163", "GSM587164", "GSM587165", "GSM587166", "GSM587167", "GSM587168", "GSM587169", "GSM587170", "GSM587171", "GSM587172", "GSM587173", "GSM587174", "GSM587175", "GSM587176", "GSM587177", "GSM587178", "GSM587179", "GSM587180", "GSM587181", "GSM587182", "GSM587183", "GSM587184", "GSM587185", "GSM587186" ], "type": "specimen", "id": "GDS3885_1" }, { "dataset_id": "GDS3885", "description": "monolayer culture, ML", "sample_id": [ "GSM587187", "GSM587188", "GSM587189", "GSM587190" ], "type": "specimen", "id": "GDS3885_2" }, { "dataset_id": "GDS3885", "description": "GSf (full) cell line", "sample_id": [ "GSM587203", "GSM587204", "GSM587205", "GSM587206", "GSM587207", "GSM587208", "GSM587209", "GSM587210", "GSM587211", "GSM587212", "GSM587213", "GSM587214", "GSM587215", "GSM587216", "GSM587217" ], "type": "specimen", "id": "GDS3885_3" }, { "dataset_id": "GDS3885", "description": "GSr (restricted) cell line", "sample_id": [ "GSM587191", "GSM587192", "GSM587193", "GSM587194", "GSM587195", "GSM587196", "GSM587197", "GSM587198", "GSM587199", "GSM587200", "GSM587201", "GSM587202" ], "type": "specimen", "id": "GDS3885_4" }, { "dataset_id": "GDS3885", "description": "GSf (full) neurosphere", "sample_id": [ "GSM198767", "GSM198769", "GSM198772", "GSM198773", "GSM198776", "GSM198778", "GSM198780", "GSM198781" ], "type": "specimen", "id": "GDS3885_5" }, { "dataset_id": "GDS3885", "description": "GSr (restricted) neurosphere", "sample_id": [ "GSM198765", "GSM198766", "GSM198768", "GSM198770", "GSM198771", "GSM198774", "GSM198775", "GSM198777", "GSM198779" ], "type": "specimen", "id": "GDS3885_6" }, { "dataset_id": "GDS3885", "description": "GS primary tumor", "sample_id": [ "GSM587218", "GSM587219", "GSM587220", "GSM587221", "GSM587222", "GSM587223", "GSM587224", "GSM587225", "GSM587226", "GSM587227", "GSM587228", "GSM587229" ], "type": "specimen", "id": "GDS3885_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3885", "version": 1.0, "instances": "92", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3885.tab", "compression": "gz" } ], [ [ "GDS3886.tab" ], { "title": "Multiple sclerosis: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells (PBMCs) from multiple sclerosis (MS) patients. MS is an inflammatory disease of the central nervous system (CNS). Results provide insight into molecular mechanisms underlying MS pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "21346816", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE23832", "order": "none", "update_date": "Dec 12 2011", "subsets": [ { "dataset_id": "GDS3886", "description": "healthy control", "sample_id": [ "GSM587541", "GSM587542", "GSM587543", "GSM587544" ], "type": "disease state", "id": "GDS3886_1" }, { "dataset_id": "GDS3886", "description": "multiple sclerosis", "sample_id": [ "GSM587545", "GSM587546", "GSM587547", "GSM587548", "GSM587549", "GSM587550", "GSM587551", "GSM587552" ], "type": "disease state", "id": "GDS3886_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3886", "version": 1.0, "instances": "12", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3886.tab", "compression": "gz" } ], [ [ "GDS3887.tab" ], { "title": "Uroplakin II promoter-SV40Tag transgenic model for invasive bladder cancer: time course", "description": "Analysis of urothelium from UPII-SV40Tag transgenics at 3, 6, 20, 30 weeks of age, corresponding to premalignant, carcinoma in situ, early and later stage invasive transitional cell carcinoma of the bladder (TCC), respectively. Results provide insight into molecular basis of early TCC development.", "type": "Expression profiling by array", "pubmed_id": "20501863", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE23845", "order": "none", "update_date": "Dec 12 2011", "subsets": [ { "dataset_id": "GDS3887", "description": "3 week", "sample_id": [ "GSM587890", "GSM587889", "GSM587892", "GSM587891" ], "type": "age", "id": "GDS3887_1" }, { "dataset_id": "GDS3887", "description": "6 week", "sample_id": [ "GSM587893", "GSM587895", "GSM587894" ], "type": "age", "id": "GDS3887_2" }, { "dataset_id": "GDS3887", "description": "20 week", "sample_id": [ "GSM587897", "GSM587896", "GSM587899", "GSM587898" ], "type": "age", "id": "GDS3887_3" }, { "dataset_id": "GDS3887", "description": "30 week", "sample_id": [ "GSM587901", "GSM587900", "GSM587903", "GSM587902" ], "type": "age", "id": "GDS3887_4" }, { "dataset_id": "GDS3887", "description": "wild type", "sample_id": [ "GSM587893", "GSM587890", "GSM587889", "GSM587901", "GSM587900", "GSM587897", "GSM587896" ], "type": "genotype/variation", "id": "GDS3887_5" }, { "dataset_id": "GDS3887", "description": "UPII-SV40Tag", "sample_id": [ "GSM587895", "GSM587894", "GSM587892", "GSM587891", "GSM587903", "GSM587902", "GSM587899", "GSM587898" ], "type": "genotype/variation", "id": "GDS3887_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3887", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3887.tab", "compression": "gz" } ], [ [ "GDS3888.tab" ], { "title": "Non-symbiotic hemoglobin AtHb1 overexpression effect on seeds under moderate hypoxia", "description": "Analysis of siliques from transgenic plants overexpressing AtHb1 and exposed to control (normoxic) and moderate hypoxic conditions. AtHb1 overexpression mediates a pre-adaptation to hypoxic stress. Results provide insight into the molecular mechanisms underlying AtHb1 function.", "type": "Expression profiling by array", "pubmed_id": "21406103", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE23846", "order": "none", "update_date": "Dec 12 2011", "subsets": [ { "dataset_id": "GDS3888", "description": "wild type", "sample_id": [ "GSM587904", "GSM587905", "GSM587906", "GSM587907", "GSM587908", "GSM587909" ], "type": "genotype/variation", "id": "GDS3888_1" }, { "dataset_id": "GDS3888", "description": "AtHb1 transgenic", "sample_id": [ "GSM587910", "GSM587911", "GSM587912", "GSM587913", "GSM587914", "GSM587915" ], "type": "genotype/variation", "id": "GDS3888_2" }, { "dataset_id": "GDS3888", "description": "hypoxic conditions", "sample_id": [ "GSM587915", "GSM587914", "GSM587913", "GSM587909", "GSM587908", "GSM587907" ], "type": "stress", "id": "GDS3888_3" }, { "dataset_id": "GDS3888", "description": "control (normoxia)", "sample_id": [ "GSM587912", "GSM587911", "GSM587910", "GSM587906", "GSM587905", "GSM587904" ], "type": "stress", "id": "GDS3888_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3888", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3888.tab", "compression": "gz" } ], [ [ "GDS3889.tab" ], { "title": "Hematopoietic CD34+ cells exposed in vitro to dioxin", "description": "Analysis of hematopoietic progenitor CD34+ cells from 5 healthy donors (3 paired samples) before and after in vitro 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) exposure. Results provide insight into the molecular pathways of TCDD-induced hematopoietic progenitor cell impairment in bone marrow.", "type": "Expression profiling by array", "pubmed_id": "21296121", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE24193", "order": "none", "update_date": "Dec 12 2011", "subsets": [ { "dataset_id": "GDS3889", "description": "TCDD", "sample_id": [ "GSM595123", "GSM595121", "GSM595125", "GSM595119" ], "type": "agent", "id": "GDS3889_1" }, { "dataset_id": "GDS3889", "description": "untreated, normal", "sample_id": [ "GSM595124", "GSM595122", "GSM595120", "GSM595118" ], "type": "agent", "id": "GDS3889_2" }, { "dataset_id": "GDS3889", "description": "donor 1", "sample_id": [ "GSM595118", "GSM595119" ], "type": "individual", "id": "GDS3889_3" }, { "dataset_id": "GDS3889", "description": "donor 3", "sample_id": [ "GSM595120", "GSM595121" ], "type": "individual", "id": "GDS3889_4" }, { "dataset_id": "GDS3889", "description": "donor 4", "sample_id": [ "GSM595122", "GSM595123" ], "type": "individual", "id": "GDS3889_5" }, { "dataset_id": "GDS3889", "description": "donor 5", "sample_id": [ "GSM595124" ], "type": "individual", "id": "GDS3889_6" }, { "dataset_id": "GDS3889", "description": "donor 2", "sample_id": [ "GSM595125" ], "type": "individual", "id": "GDS3889_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3889", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3889.tab", "compression": "gz" } ], [ [ "GDS389.tab" ], { "title": "Colon cancer", "description": "Examination of transition from normal intestinal epithelia to adenomas and carcinomas in the multiple intestinal neoplasia adenomatous polyposis coli mutant mouse, APC(Min/+).", "type": "Expression profiling by array", "pubmed_id": "13130079", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE422", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS389", "description": "APC(Min/+) mutant", "sample_id": [ "GSM6197", "GSM6198", "GSM6199", "GSM6200", "GSM6201", "GSM6202", "GSM6203", "GSM6204", "GSM6205", "GSM6206" ], "type": "strain", "id": "GDS389_1" }, { "dataset_id": "GDS389", "description": "C57/BL6 wild-type", "sample_id": [ "GSM6191", "GSM6192", "GSM6193", "GSM6194", "GSM6195", "GSM6196" ], "type": "strain", "id": "GDS389_2" }, { "dataset_id": "GDS389", "description": "adenoma", "sample_id": [ "GSM6197", "GSM6198", "GSM6199", "GSM6200", "GSM6201" ], "type": "disease state", "id": "GDS389_3" }, { "dataset_id": "GDS389", "description": "carcinoma", "sample_id": [ "GSM6202", "GSM6203", "GSM6204", "GSM6205", "GSM6206" ], "type": "disease state", "id": "GDS389_4" }, { "dataset_id": "GDS389", "description": "control", "sample_id": [ "GSM6191", "GSM6192", "GSM6193", "GSM6194", "GSM6195", "GSM6196" ], "type": "disease state", "id": "GDS389_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS389", "version": 1.0, "instances": "16", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS389.tab", "compression": "gz" } ], [ [ "GDS3890.tab" ], { "title": "Interstrain differences in the liver effects of trichloroethylene", "description": "Analysis of liver from multiple inbred strains 24hr after trichloroethylene (TCE) treatment. TCE is a widely used industrial chemical and a ubiquitous environmental contaminant. Results provide insight into the molecular mechanisms underlying interstrain differences in liver effects of TCE.", "type": "Expression profiling by array", "pubmed_id": "21135412", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "94", "value_type": "log2 ratio", "reference_series": "GSE24278", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3890", "description": "129S1/SvImJ", "sample_id": [ "GSM597130", "GSM597144", "GSM597168", "GSM597077", "GSM597095", "GSM597113" ], "type": "strain", "id": "GDS3890_1" }, { "dataset_id": "GDS3890", "description": "A/J", "sample_id": [ "GSM597078", "GSM597096", "GSM597114", "GSM597131", "GSM597158" ], "type": "strain", "id": "GDS3890_2" }, { "dataset_id": "GDS3890", "description": "AKR/J", "sample_id": [ "GSM597116", "GSM597146", "GSM597159", "GSM597079", "GSM597097", "GSM597115" ], "type": "strain", "id": "GDS3890_3" }, { "dataset_id": "GDS3890", "description": "B6C3F1/J", "sample_id": [ "GSM597080", "GSM597098", "GSM597117", "GSM597132", "GSM597147", "GSM597160" ], "type": "strain", "id": "GDS3890_4" }, { "dataset_id": "GDS3890", "description": "BALB/cByJ", "sample_id": [ "GSM597120", "GSM597133", "GSM597148", "GSM597081", "GSM597099", "GSM597118" ], "type": "strain", "id": "GDS3890_5" }, { "dataset_id": "GDS3890", "description": "BTBR+tf/J", "sample_id": [ "GSM597082", "GSM597100", "GSM597121", "GSM597134", "GSM597149", "GSM597161" ], "type": "strain", "id": "GDS3890_6" }, { "dataset_id": "GDS3890", "description": "C3H/HeJ", "sample_id": [ "GSM597084", "GSM597150", "GSM597162", "GSM597083", "GSM597101", "GSM597122" ], "type": "strain", "id": "GDS3890_7" }, { "dataset_id": "GDS3890", "description": "CAST/EiJ", "sample_id": [ "GSM597136", "GSM597152", "GSM597164", "GSM597085", "GSM597103", "GSM597123" ], "type": "strain", "id": "GDS3890_8" }, { "dataset_id": "GDS3890", "description": "DBA/2J", "sample_id": [ "GSM597086", "GSM597104", "GSM597124", "GSM597137", "GSM597145", "GSM597165", "GSM597153" ], "type": "strain", "id": "GDS3890_9" }, { "dataset_id": "GDS3890", "description": "FVB/NJ", "sample_id": [ "GSM597088", "GSM597138", "GSM597166", "GSM597087", "GSM597105", "GSM597125" ], "type": "strain", "id": "GDS3890_10" }, { "dataset_id": "GDS3890", "description": "KK/HIJ", "sample_id": [ "GSM597090", "GSM597106", "GSM597139", "GSM597155", "GSM597167" ], "type": "strain", "id": "GDS3890_11" }, { "dataset_id": "GDS3890", "description": "MOLF/EiJ", "sample_id": [ "GSM597140", "GSM597154", "GSM597169", "GSM597091", "GSM597107", "GSM597126" ], "type": "strain", "id": "GDS3890_12" }, { "dataset_id": "GDS3890", "description": "NOD/LtJ", "sample_id": [ "GSM597092", "GSM597110", "GSM597127", "GSM597108", "GSM597141", "GSM597170" ], "type": "strain", "id": "GDS3890_13" }, { "dataset_id": "GDS3890", "description": "NZW/LacJ", "sample_id": [ "GSM597109", "GSM597142", "GSM597156", "GSM597093", "GSM597111", "GSM597128" ], "type": "strain", "id": "GDS3890_14" }, { "dataset_id": "GDS3890", "description": "PWD/PhJ", "sample_id": [ "GSM597094", "GSM597112", "GSM597129", "GSM597089", "GSM597143", "GSM597157" ], "type": "strain", "id": "GDS3890_15" }, { "dataset_id": "GDS3890", "description": "c57BL/6J", "sample_id": [ "GSM597102", "GSM597119", "GSM597135", "GSM597151", "GSM597163" ], "type": "strain", "id": "GDS3890_16" }, { "dataset_id": "GDS3890", "description": "vehicle, control", "sample_id": [ "GSM597130", "GSM597144", "GSM597168", "GSM597078", "GSM597096", "GSM597114", "GSM597116", "GSM597146", "GSM597159", "GSM597080", "GSM597098", "GSM597117", "GSM597120", "GSM597133", "GSM597148", "GSM597082", "GSM597100", "GSM597121", "GSM597084", "GSM597150", "GSM597162", "GSM597136", "GSM597152", "GSM597164", "GSM597086", "GSM597104", "GSM597124", "GSM597088", "GSM597138", "GSM597166", "GSM597090", "GSM597106", "GSM597140", "GSM597154", "GSM597169", "GSM597092", "GSM597110", "GSM597127", "GSM597109", "GSM597142", "GSM597156", "GSM597094", "GSM597112", "GSM597129", "GSM597102", "GSM597119" ], "type": "agent", "id": "GDS3890_17" }, { "dataset_id": "GDS3890", "description": "TCE", "sample_id": [ "GSM597077", "GSM597095", "GSM597113", "GSM597131", "GSM597158", "GSM597079", "GSM597097", "GSM597115", "GSM597132", "GSM597147", "GSM597160", "GSM597081", "GSM597099", "GSM597118", "GSM597134", "GSM597149", "GSM597161", "GSM597083", "GSM597101", "GSM597122", "GSM597085", "GSM597103", "GSM597123", "GSM597137", "GSM597145", "GSM597165", "GSM597153", "GSM597087", "GSM597105", "GSM597125", "GSM597139", "GSM597155", "GSM597167", "GSM597091", "GSM597107", "GSM597126", "GSM597108", "GSM597141", "GSM597170", "GSM597093", "GSM597111", "GSM597128", "GSM597089", "GSM597143", "GSM597157", "GSM597135", "GSM597151", "GSM597163" ], "type": "agent", "id": "GDS3890_18" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS3890", "version": 1.0, "instances": "94", "variables": 27550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3890.tab", "compression": "gz" } ], [ [ "GDS3891.tab" ], { "title": "Adaptor protein p14 conditional knockout effect on liver", "description": "Analysis of liver from 6 week-old, p14 \u0394hep knockout males. The MEK1 partner (MP1)-p14 scaffolding complex, localized to late endosomes, plays a key role in regulating MAPK signaling. Results provide insight into molecular mechanisms located downstream of p14 involved in propagating MAPK signaling.", "type": "Expression profiling by array", "pubmed_id": "21268275", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE24461", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3891", "description": "p14 KO", "sample_id": [ "GSM602662", "GSM602663", "GSM602664" ], "type": "genotype/variation", "id": "GDS3891_1" }, { "dataset_id": "GDS3891", "description": "wild type", "sample_id": [ "GSM602665", "GSM602666", "GSM602667" ], "type": "genotype/variation", "id": "GDS3891_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3891", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3891.tab", "compression": "gz" } ], [ [ "GDS3892.tab" ], { "title": "Induced pluripotent stem cell-based accelerated aging model", "description": "Analysis of iPSCs generated from fibroblasts from patients with Hutchinson-Gilford progeria syndrome (HGPS), a rare and fatal premature aging disease. Premature aging was recapitulated by differentiation of the HGPS-iPSCs. Results provide insight into molecular mechanisms underlying premature aging.", "type": "Expression profiling by array", "pubmed_id": "21346760", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE24487", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3892", "description": "wild type", "sample_id": [ "GSM603015", "GSM603043", "GSM603050", "GSM603051", "GSM603054", "GSM603055" ], "type": "genotype/variation", "id": "GDS3892_1" }, { "dataset_id": "GDS3892", "description": "HGPS", "sample_id": [ "GSM603044", "GSM603045", "GSM603052", "GSM603053" ], "type": "genotype/variation", "id": "GDS3892_2" }, { "dataset_id": "GDS3892", "description": "fibroblast", "sample_id": [ "GSM603015", "GSM603043", "GSM603044", "GSM603045" ], "type": "cell line", "id": "GDS3892_3" }, { "dataset_id": "GDS3892", "description": "iPSC", "sample_id": [ "GSM603050", "GSM603051", "GSM603052", "GSM603053" ], "type": "cell line", "id": "GDS3892_4" }, { "dataset_id": "GDS3892", "description": "ESC", "sample_id": [ "GSM603054", "GSM603055" ], "type": "cell line", "id": "GDS3892_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3892", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3892.tab", "compression": "gz" } ], [ [ "GDS3893.tab" ], { "title": "Fasting effect on multiple tissues: time course", "description": "Analysis of brain, small intestine, kidney, liver, and skeletal muscle subjected to 0-72 hrs of fasting. Adapting to starvation requires an interorgan integration of metabolic activity to protect vital organs. Results provide insight into molecular mechanisms underlying this adaptive response.", "type": "Expression profiling by array", "pubmed_id": "21393243", "platform": "GPL11012", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22680", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "122", "value_type": "log2 ratio", "reference_series": "GSE24504", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3893", "description": "liver", "sample_id": [ "GSM603490", "GSM603491", "GSM603492", "GSM603493", "GSM603494", "GSM603495", "GSM603496", "GSM603497", "GSM603498", "GSM603499", "GSM603500", "GSM603501", "GSM603502", "GSM603503", "GSM603504", "GSM603505", "GSM603506", "GSM603507", "GSM603508", "GSM603509", "GSM603510", "GSM603511", "GSM603512", "GSM603513" ], "type": "tissue", "id": "GDS3893_1" }, { "dataset_id": "GDS3893", "description": "intestine", "sample_id": [ "GSM603514", "GSM603515", "GSM603516", "GSM603517", "GSM603518", "GSM603519", "GSM603520", "GSM603521", "GSM603522", "GSM603523", "GSM603524", "GSM603525", "GSM603526", "GSM603527", "GSM603528", "GSM603529", "GSM603530", "GSM603531", "GSM603532", "GSM603533", "GSM603534", "GSM603535", "GSM603536", "GSM603537", "GSM603538" ], "type": "tissue", "id": "GDS3893_2" }, { "dataset_id": "GDS3893", "description": "kidney", "sample_id": [ "GSM603539", "GSM603540", "GSM603541", "GSM603542", "GSM603543", "GSM603544", "GSM603545", "GSM603546", "GSM603547", "GSM603548", "GSM603549", "GSM603550", "GSM603551", "GSM603552", "GSM603553", "GSM603554", "GSM603555", "GSM603556", "GSM603557", "GSM603558", "GSM603559", "GSM603560", "GSM603561", "GSM603562" ], "type": "tissue", "id": "GDS3893_3" }, { "dataset_id": "GDS3893", "description": "muscle", "sample_id": [ "GSM603563", "GSM603564", "GSM603565", "GSM603566", "GSM603567", "GSM603568", "GSM603569", "GSM603570", "GSM603571", "GSM603572", "GSM603573", "GSM603574", "GSM603575", "GSM603576", "GSM603577", "GSM603578", "GSM603579", "GSM603580", "GSM603581", "GSM603582", "GSM603583", "GSM603584", "GSM603585", "GSM603586", "GSM603587" ], "type": "tissue", "id": "GDS3893_4" }, { "dataset_id": "GDS3893", "description": "brain", "sample_id": [ "GSM603588", "GSM603589", "GSM603590", "GSM603591", "GSM603592", "GSM603593", "GSM603594", "GSM603595", "GSM603596", "GSM603597", "GSM603598", "GSM603599", "GSM603600", "GSM603601", "GSM603602", "GSM603603", "GSM603604", "GSM603605", "GSM603606", "GSM603607", "GSM603608", "GSM603609", "GSM603610", "GSM603611" ], "type": "tissue", "id": "GDS3893_5" }, { "dataset_id": "GDS3893", "description": "0 hour", "sample_id": [ "GSM603588", "GSM603589", "GSM603590", "GSM603591", "GSM603592", "GSM603514", "GSM603515", "GSM603516", "GSM603517", "GSM603518", "GSM603539", "GSM603540", "GSM603541", "GSM603542", "GSM603543", "GSM603490", "GSM603491", "GSM603492", "GSM603493", "GSM603494", "GSM603563", "GSM603564", "GSM603565", "GSM603566", "GSM603567" ], "type": "time", "id": "GDS3893_6" }, { "dataset_id": "GDS3893", "description": "12 hour", "sample_id": [ "GSM603593", "GSM603594", "GSM603595", "GSM603596", "GSM603597", "GSM603519", "GSM603520", "GSM603521", "GSM603522", "GSM603523", "GSM603544", "GSM603545", "GSM603546", "GSM603547", "GSM603548", "GSM603495", "GSM603496", "GSM603497", "GSM603498", "GSM603568", "GSM603569", "GSM603570", "GSM603571", "GSM603572" ], "type": "time", "id": "GDS3893_7" }, { "dataset_id": "GDS3893", "description": "24 hour", "sample_id": [ "GSM603598", "GSM603599", "GSM603600", "GSM603601", "GSM603524", "GSM603525", "GSM603526", "GSM603527", "GSM603528", "GSM603549", "GSM603550", "GSM603551", "GSM603552", "GSM603499", "GSM603500", "GSM603501", "GSM603502", "GSM603503", "GSM603573", "GSM603574", "GSM603575", "GSM603576", "GSM603577" ], "type": "time", "id": "GDS3893_8" }, { "dataset_id": "GDS3893", "description": "48 hour", "sample_id": [ "GSM603602", "GSM603603", "GSM603604", "GSM603605", "GSM603606", "GSM603529", "GSM603530", "GSM603531", "GSM603532", "GSM603533", "GSM603553", "GSM603554", "GSM603555", "GSM603556", "GSM603557", "GSM603504", "GSM603505", "GSM603506", "GSM603507", "GSM603508", "GSM603578", "GSM603579", "GSM603580", "GSM603581", "GSM603582" ], "type": "time", "id": "GDS3893_9" }, { "dataset_id": "GDS3893", "description": "72 hour", "sample_id": [ "GSM603607", "GSM603608", "GSM603609", "GSM603610", "GSM603611", "GSM603534", "GSM603535", "GSM603536", "GSM603537", "GSM603538", "GSM603558", "GSM603559", "GSM603560", "GSM603561", "GSM603562", "GSM603509", "GSM603510", "GSM603511", "GSM603512", "GSM603513", "GSM603583", "GSM603584", "GSM603585", "GSM603586", "GSM603587" ], "type": "time", "id": "GDS3893_10" } ], "taxid": "10090", "genes": 19602, "aggregation_function": "mean", "name": "GDS3893", "version": 1.0, "instances": "122", "variables": 19605, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3893.tab", "compression": "gz" } ], [ [ "GDS3894.tab" ], { "title": "MOSE model of ovarian cancer progression: epithelial cells", "description": "Analysis of mouse ovarian surface epithelial (MOSE) cells at various stages (early, intermediate, and late) as they transition from a pre-neoplastic/non-malignant state to a malignant/invasive state. Results provide insight into the molecular mechanisms underlying the early stages of ovarian cancer.", "type": "Expression profiling by array", "pubmed_id": "21390237", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE24789", "order": "ordered", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3894", "description": "early (passage 13, 14, and 15)", "sample_id": [ "GSM610470", "GSM610471", "GSM610472" ], "type": "development stage", "id": "GDS3894_1" }, { "dataset_id": "GDS3894", "description": "intermediate (passages 63, 71, and 73)", "sample_id": [ "GSM610473", "GSM610474", "GSM610475" ], "type": "development stage", "id": "GDS3894_2" }, { "dataset_id": "GDS3894", "description": "late (passage 136, 142, and 143)", "sample_id": [ "GSM610476", "GSM610477", "GSM610478" ], "type": "development stage", "id": "GDS3894_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3894", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3894.tab", "compression": "gz" } ], [ [ "GDS3895.tab" ], { "title": "BPH/J2 model of neurogenic hypertension: hypothalamus", "description": "Analysis of hypothalamus from young (6 week-old) and adult (26 week-old) BPH/2J hypertensive males and age-/gender-matched normotensive BPN/3J controls. Results provide insight into molecular mechanisms underlying early and established neurogenic hypertension in hypothalamus.", "type": "Expression profiling by array", "pubmed_id": "21487032", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE25076", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3895", "description": "hypertensive", "sample_id": [ "GSM618074", "GSM618075", "GSM618076", "GSM618077", "GSM618078", "GSM618079", "GSM618086", "GSM618087", "GSM618088", "GSM618089", "GSM618090", "GSM618091" ], "type": "disease state", "id": "GDS3895_1" }, { "dataset_id": "GDS3895", "description": "normotensive", "sample_id": [ "GSM618080", "GSM618081", "GSM618082", "GSM618083", "GSM618084", "GSM618085", "GSM618092", "GSM618093", "GSM618094", "GSM618095", "GSM618096", "GSM618097" ], "type": "disease state", "id": "GDS3895_2" }, { "dataset_id": "GDS3895", "description": "BPH/2J", "sample_id": [ "GSM618074", "GSM618075", "GSM618076", "GSM618077", "GSM618078", "GSM618079", "GSM618086", "GSM618087", "GSM618088", "GSM618089", "GSM618090", "GSM618091" ], "type": "strain", "id": "GDS3895_3" }, { "dataset_id": "GDS3895", "description": "BPN/3J", "sample_id": [ "GSM618080", "GSM618081", "GSM618082", "GSM618083", "GSM618084", "GSM618085", "GSM618092", "GSM618093", "GSM618094", "GSM618095", "GSM618096", "GSM618097" ], "type": "strain", "id": "GDS3895_4" }, { "dataset_id": "GDS3895", "description": "6 weeks", "sample_id": [ "GSM618086", "GSM618087", "GSM618088", "GSM618089", "GSM618090", "GSM618091", "GSM618092", "GSM618093", "GSM618094", "GSM618095", "GSM618096", "GSM618097" ], "type": "age", "id": "GDS3895_5" }, { "dataset_id": "GDS3895", "description": "26 weeks", "sample_id": [ "GSM618074", "GSM618075", "GSM618076", "GSM618077", "GSM618078", "GSM618079", "GSM618080", "GSM618081", "GSM618082", "GSM618083", "GSM618084", "GSM618085" ], "type": "age", "id": "GDS3895_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3895", "version": 1.0, "instances": "24", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3895.tab", "compression": "gz" } ], [ [ "GDS3896.tab" ], { "title": "Phosphate deficiency effect on roots: time course", "description": "Analysis of roots from plants grown in the absence of phosphate (Pi) for up to 24 hrs. Pi deficiency-induces the formation of root hairs with increased length and density. Results provide insight into molecular mechanisms involved in acclimating plants to low Pi availability.", "type": "Expression profiling by array", "pubmed_id": "21248074", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE25171", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3896", "description": "0 hour", "sample_id": [ "GSM618324", "GSM618332", "GSM618340", "GSM618325", "GSM618333", "GSM618341" ], "type": "time", "id": "GDS3896_1" }, { "dataset_id": "GDS3896", "description": "1 hour", "sample_id": [ "GSM618326", "GSM618334", "GSM618342", "GSM618327", "GSM618335", "GSM618343" ], "type": "time", "id": "GDS3896_2" }, { "dataset_id": "GDS3896", "description": "6 hour", "sample_id": [ "GSM618328", "GSM618336", "GSM618344", "GSM618329", "GSM618337", "GSM618345" ], "type": "time", "id": "GDS3896_3" }, { "dataset_id": "GDS3896", "description": "24 hour", "sample_id": [ "GSM618330", "GSM618338", "GSM618346", "GSM618331", "GSM618339", "GSM618347" ], "type": "time", "id": "GDS3896_4" }, { "dataset_id": "GDS3896", "description": "phosphate-free", "sample_id": [ "GSM618325", "GSM618333", "GSM618341", "GSM618327", "GSM618335", "GSM618343", "GSM618331", "GSM618339", "GSM618347", "GSM618329", "GSM618337", "GSM618345" ], "type": "growth protocol", "id": "GDS3896_5" }, { "dataset_id": "GDS3896", "description": "phosphate-replete (control)", "sample_id": [ "GSM618324", "GSM618332", "GSM618340", "GSM618326", "GSM618334", "GSM618342", "GSM618330", "GSM618338", "GSM618346", "GSM618328", "GSM618336", "GSM618344" ], "type": "growth protocol", "id": "GDS3896_6" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3896", "version": 1.0, "instances": "24", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3896.tab", "compression": "gz" } ], [ [ "GDS3897.tab" ], { "title": "Red meat consumption effect on inflammatory bowel disease: colon", "description": "Analysis of colon biopsies from inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS) subjects. Colon biopsies also examined from 12 of these subjects (6 IBD, 6 IBS) after a 7-day diet high in red meat (300g/day). Results provide insight into molecular basis of IBD pathophysiology.", "type": "Expression profiling by array", "pubmed_id": "21669488", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE25220", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3897", "description": "inflammatory bowel disease", "sample_id": [ "GSM620750", "GSM620751", "GSM620755", "GSM620756", "GSM620757", "GSM620762", "GSM620763", "GSM620764", "GSM620765", "GSM620766", "GSM620767", "GSM620768", "GSM620770", "GSM620771", "GSM620776", "GSM620779", "GSM620780", "GSM620781", "GSM620782", "GSM620783", "GSM620784", "GSM620787", "GSM620788", "GSM620792", "GSM620793" ], "type": "disease state", "id": "GDS3897_1" }, { "dataset_id": "GDS3897", "description": "irritable bowel syndrome (control)", "sample_id": [ "GSM620752", "GSM620753", "GSM620754", "GSM620758", "GSM620759", "GSM620760", "GSM620761", "GSM620769", "GSM620772", "GSM620773", "GSM620774", "GSM620775", "GSM620777", "GSM620778", "GSM620785", "GSM620786", "GSM620789", "GSM620790", "GSM620791" ], "type": "disease state", "id": "GDS3897_2" }, { "dataset_id": "GDS3897", "description": "before high red meat diet", "sample_id": [ "GSM620764", "GSM620776", "GSM620780", "GSM620782", "GSM620752", "GSM620760", "GSM620769", "GSM620774", "GSM620778", "GSM620789", "GSM620750", "GSM620755", "GSM620756", "GSM620762", "GSM620766", "GSM620767", "GSM620770", "GSM620771", "GSM620779", "GSM620781", "GSM620783", "GSM620787", "GSM620788", "GSM620792", "GSM620793", "GSM620754", "GSM620758", "GSM620772", "GSM620775", "GSM620777", "GSM620785", "GSM620791" ], "type": "protocol", "id": "GDS3897_3" }, { "dataset_id": "GDS3897", "description": "after high red meat diet", "sample_id": [ "GSM620765", "GSM620753", "GSM620761", "GSM620790", "GSM620751", "GSM620757", "GSM620763", "GSM620768", "GSM620784", "GSM620759", "GSM620773", "GSM620786" ], "type": "protocol", "id": "GDS3897_4" }, { "dataset_id": "GDS3897", "description": "male", "sample_id": [ "GSM620750", "GSM620751", "GSM620755", "GSM620756", "GSM620757", "GSM620762", "GSM620763", "GSM620766", "GSM620767", "GSM620768", "GSM620770", "GSM620771", "GSM620779", "GSM620781", "GSM620783", "GSM620784", "GSM620787", "GSM620788", "GSM620792", "GSM620793", "GSM620754", "GSM620758", "GSM620759", "GSM620772", "GSM620773", "GSM620775", "GSM620777", "GSM620785", "GSM620786", "GSM620791" ], "type": "gender", "id": "GDS3897_5" }, { "dataset_id": "GDS3897", "description": "female", "sample_id": [ "GSM620764", "GSM620765", "GSM620776", "GSM620780", "GSM620782", "GSM620752", "GSM620753", "GSM620760", "GSM620761", "GSM620769", "GSM620774", "GSM620778", "GSM620789", "GSM620790" ], "type": "gender", "id": "GDS3897_6" }, { "dataset_id": "GDS3897", "description": "subject 2", "sample_id": [ "GSM620750", "GSM620751" ], "type": "individual", "id": "GDS3897_7" }, { "dataset_id": "GDS3897", "description": "subject 3", "sample_id": [ "GSM620752", "GSM620753" ], "type": "individual", "id": "GDS3897_8" }, { "dataset_id": "GDS3897", "description": "subject 4", "sample_id": [ "GSM620754" ], "type": "individual", "id": "GDS3897_9" }, { "dataset_id": "GDS3897", "description": "subject 5", "sample_id": [ "GSM620755" ], "type": "individual", "id": "GDS3897_10" }, { "dataset_id": "GDS3897", "description": "subject 6", "sample_id": [ "GSM620756", "GSM620757" ], "type": "individual", "id": "GDS3897_11" }, { "dataset_id": "GDS3897", "description": "subject 7", "sample_id": [ "GSM620758", "GSM620759" ], "type": "individual", "id": "GDS3897_12" }, { "dataset_id": "GDS3897", "description": "subject 8", "sample_id": [ "GSM620760", "GSM620761" ], "type": "individual", "id": "GDS3897_13" }, { "dataset_id": "GDS3897", "description": "subject 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"type": "individual", "id": "GDS3897_21" }, { "dataset_id": "GDS3897", "description": "subject 18", "sample_id": [ "GSM620774" ], "type": "individual", "id": "GDS3897_22" }, { "dataset_id": "GDS3897", "description": "subject 19", "sample_id": [ "GSM620775" ], "type": "individual", "id": "GDS3897_23" }, { "dataset_id": "GDS3897", "description": "subject 20", "sample_id": [ "GSM620776" ], "type": "individual", "id": "GDS3897_24" }, { "dataset_id": "GDS3897", "description": "subject 21", "sample_id": [ "GSM620777" ], "type": "individual", "id": "GDS3897_25" }, { "dataset_id": "GDS3897", "description": "subject 22", "sample_id": [ "GSM620778" ], "type": "individual", "id": "GDS3897_26" }, { "dataset_id": "GDS3897", "description": "subject 23", "sample_id": [ "GSM620779" ], "type": "individual", "id": "GDS3897_27" }, { "dataset_id": "GDS3897", "description": "subject 24", "sample_id": [ "GSM620780" ], "type": "individual", "id": "GDS3897_28" }, { "dataset_id": "GDS3897", "description": "subject 25", "sample_id": [ "GSM620781" ], "type": "individual", "id": "GDS3897_29" }, { "dataset_id": "GDS3897", "description": "subject 26", "sample_id": [ "GSM620782" ], "type": "individual", "id": "GDS3897_30" }, { "dataset_id": "GDS3897", "description": "subject 27", "sample_id": [ "GSM620783", "GSM620784" ], "type": "individual", "id": "GDS3897_31" }, { "dataset_id": "GDS3897", "description": "subject 28", "sample_id": [ "GSM620785", "GSM620786" ], "type": "individual", "id": "GDS3897_32" }, { "dataset_id": "GDS3897", "description": "subject 29", "sample_id": [ "GSM620787" ], "type": "individual", "id": "GDS3897_33" }, { "dataset_id": "GDS3897", "description": "subject 30", "sample_id": [ "GSM620788" ], "type": "individual", "id": "GDS3897_34" }, { "dataset_id": "GDS3897", "description": "subject 31", "sample_id": [ "GSM620789", "GSM620790" ], "type": "individual", "id": "GDS3897_35" }, { "dataset_id": "GDS3897", "description": "subject 32", "sample_id": [ "GSM620791" ], "type": "individual", "id": "GDS3897_36" }, { "dataset_id": "GDS3897", "description": "subject 33", "sample_id": [ "GSM620792" ], "type": "individual", "id": "GDS3897_37" }, { "dataset_id": "GDS3897", "description": "subject 56", "sample_id": [ "GSM620793" ], "type": "individual", "id": "GDS3897_38" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS3897", "version": 1.0, "instances": "44", "variables": 29821, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3897.tab", "compression": "gz" } ], [ [ "GDS3898.tab" ], { "title": "Social isolation effect on peripheral blood mononuclear cells", "description": "Analysis of PBMCs from chronically lonely, older adults. Lack of close social ties is a well-established risk factor for diseases involving the immune system and inflammation. Results provide insight into the molecular mechanisms underlying those effects.", "type": "Expression profiling by array", "pubmed_id": "21300872", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "93", "value_type": "count", "reference_series": "GSE25837", "order": "none", "update_date": "Dec 13 2011", "subsets": [ { "dataset_id": "GDS3898", "description": "lonely", "sample_id": [ "GSM634690", "GSM634667", "GSM634669", "GSM634688", "GSM634666", "GSM634653", "GSM634711", "GSM634681", "GSM634715", "GSM634659", "GSM634705", "GSM634698", "GSM634706", "GSM634680", "GSM634670", "GSM634694", "GSM634643", "GSM634704", "GSM634648", "GSM634679", "GSM634649", "GSM634650", "GSM634707" ], "type": "individual", "id": "GDS3898_1" }, { "dataset_id": "GDS3898", "description": "non-lonely", "sample_id": [ "GSM634697", "GSM634634", "GSM634699", "GSM634652", "GSM634664", "GSM634642", "GSM634689", "GSM634710", "GSM634636", "GSM634677", "GSM634696", "GSM634633", "GSM634708", "GSM634712", "GSM634647", "GSM634656", "GSM634722", "GSM634654", "GSM634644", "GSM634638", "GSM634661", "GSM634682", "GSM634673", "GSM634685", "GSM634720", "GSM634714", "GSM634672", "GSM634671", "GSM634668", "GSM634651", "GSM634684", "GSM634657", "GSM634695", "GSM634703", "GSM634692", "GSM634635", "GSM634639", "GSM634640", "GSM634723", "GSM634645", "GSM634724", "GSM634676", "GSM634717", "GSM634716", "GSM634691", "GSM634646", "GSM634678", "GSM634675", "GSM634700", "GSM634686", "GSM634658", "GSM634701", "GSM634663", "GSM634641", "GSM634683", "GSM634719", "GSM634718", "GSM634662", "GSM634660", "GSM634693", "GSM634674", "GSM634725", "GSM634665", "GSM634721", "GSM634713", "GSM634702", "GSM634655", "GSM634709", "GSM634687", "GSM634637" ], "type": "individual", "id": "GDS3898_2" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS3898", "version": 1.0, "instances": "93", "variables": 19337, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3898.tab", "compression": "gz" } ], [ [ "GDS3899.tab" ], { "title": "Early events in of DBA/2J model of glaucoma", "description": "Analysis of optic nerve head and retina from 10.5-month-old, DBA/2J females at various stages of glaucoma. The DBA/2J strain is an inherited, later-onset, complex, and chronic model of glaucoma. Results provide insight into molecular mechanisms underlying the early stages of glaucoma.", "type": "Expression profiling by array", "pubmed_id": "21383504", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "108", "value_type": "transformed count", "reference_series": "GSE26299", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3899", "description": "DBA/2J", "sample_id": [ "GSM685988", "GSM685930", "GSM685987", "GSM685929", "GSM685986", "GSM685928", "GSM685985", "GSM685927", "GSM685984", "GSM685926", "GSM685983", "GSM685925", "GSM685982", "GSM685924", "GSM685981", "GSM685923", "GSM685989", "GSM685931", "GSM685980", "GSM685922", "GSM685940", "GSM685939", "GSM685938", "GSM685937", "GSM685936", "GSM685935", "GSM685934", "GSM685933", "GSM685941", "GSM685932", "GSM685970", "GSM685910", "GSM685969", "GSM685909", "GSM685968", "GSM685908", "GSM685967", "GSM685907", "GSM685966", "GSM685906", "GSM685965", "GSM685905", "GSM685964", "GSM685904", "GSM685963", "GSM685903", "GSM685912", "GSM685971", "GSM685911", "GSM685962", "GSM685902", "GSM685960", "GSM685900", "GSM685959", "GSM685899", "GSM685958", "GSM685898", "GSM685957", "GSM685897", "GSM685956", "GSM685896", "GSM685955", "GSM685895", "GSM685954", "GSM685894", "GSM685953", "GSM685893", "GSM685961", "GSM685901", "GSM685952", "GSM685892", "GSM685978", "GSM685920", "GSM685977", "GSM685919", "GSM685976", "GSM685918", "GSM685917", "GSM685975", "GSM685916", "GSM685974", "GSM685915", "GSM685973", "GSM685914", "GSM685979", "GSM685921", "GSM685972", "GSM685913" ], "type": "strain", "id": "GDS3899_1" }, { "dataset_id": "GDS3899", "description": "DBA/2J-Gpnmb+/Sj", "sample_id": [ "GSM685998", "GSM685950", "GSM685997", "GSM685949", "GSM685996", "GSM685948", "GSM685995", "GSM685947", "GSM685994", "GSM685946", "GSM685993", "GSM685945", "GSM685992", "GSM685944", "GSM685991", "GSM685943", "GSM685999", "GSM685951", "GSM685990", "GSM685942" ], "type": "strain", "id": "GDS3899_2" }, { "dataset_id": "GDS3899", "description": "no-glaucoma control", "sample_id": [ "GSM685942", "GSM685943", "GSM685944", "GSM685945", "GSM685946", "GSM685947", "GSM685948", "GSM685949", "GSM685950", "GSM685951", "GSM685990", "GSM685991", "GSM685992", "GSM685993", "GSM685994", "GSM685995", "GSM685996", "GSM685997", "GSM685998", "GSM685999" ], "type": "disease state", "id": "GDS3899_3" }, { "dataset_id": "GDS3899", "description": "pre-glaucoma control", "sample_id": [ "GSM685932", "GSM685933", "GSM685934", "GSM685935", "GSM685936", "GSM685937", "GSM685938", "GSM685939", "GSM685940", "GSM685941" ], "type": "disease state", "id": "GDS3899_4" }, { "dataset_id": "GDS3899", "description": "no or early glaucoma", "sample_id": [ "GSM685892", "GSM685893", "GSM685894", "GSM685895", "GSM685896", "GSM685897", "GSM685898", "GSM685899", "GSM685900", "GSM685901", "GSM685902", "GSM685903", "GSM685904", "GSM685905", "GSM685906", "GSM685907", "GSM685908", "GSM685909", "GSM685910", "GSM685911", "GSM685912", "GSM685952", "GSM685953", "GSM685954", "GSM685955", "GSM685956", "GSM685957", "GSM685958", "GSM685959", "GSM685960", "GSM685961", "GSM685962", "GSM685963", "GSM685964", "GSM685965", "GSM685966", "GSM685967", "GSM685968", "GSM685969", "GSM685970", "GSM685971" ], "type": "disease state", "id": "GDS3899_5" }, { "dataset_id": "GDS3899", "description": "moderate glaucoma", "sample_id": [ "GSM685913", "GSM685914", "GSM685915", "GSM685916", "GSM685917", "GSM685918", "GSM685919", "GSM685920", "GSM685921", "GSM685972", "GSM685973", "GSM685974", "GSM685975", "GSM685976", "GSM685977", "GSM685978", "GSM685979" ], "type": "disease state", "id": "GDS3899_6" }, { "dataset_id": "GDS3899", "description": "severe glaucoma", "sample_id": [ "GSM685922", "GSM685923", "GSM685924", "GSM685925", "GSM685926", "GSM685927", "GSM685928", "GSM685929", "GSM685930", "GSM685931", "GSM685980", "GSM685981", "GSM685982", "GSM685983", "GSM685984", "GSM685985", "GSM685986", "GSM685987", "GSM685988", "GSM685989" ], "type": "disease state", "id": "GDS3899_7" }, { "dataset_id": "GDS3899", "description": "retina", "sample_id": [ "GSM685972", "GSM685973", "GSM685974", "GSM685975", "GSM685976", "GSM685977", "GSM685978", "GSM685979", "GSM685990", "GSM685991", "GSM685992", "GSM685993", "GSM685994", "GSM685995", "GSM685996", "GSM685997", "GSM685998", "GSM685999", "GSM685952", "GSM685953", "GSM685954", "GSM685955", "GSM685956", "GSM685957", "GSM685958", "GSM685959", "GSM685960", "GSM685961", "GSM685962", "GSM685963", "GSM685964", "GSM685965", "GSM685966", "GSM685967", "GSM685968", "GSM685969", "GSM685970", "GSM685971", "GSM685980", "GSM685981", "GSM685982", "GSM685983", "GSM685984", "GSM685985", "GSM685986", "GSM685987", "GSM685988", "GSM685989" ], "type": "tissue", "id": "GDS3899_8" }, { "dataset_id": "GDS3899", "description": "optic nerve head", "sample_id": [ "GSM685913", "GSM685914", "GSM685915", "GSM685916", "GSM685917", "GSM685918", "GSM685919", "GSM685920", "GSM685921", "GSM685942", "GSM685943", "GSM685944", "GSM685945", "GSM685946", "GSM685947", "GSM685948", "GSM685949", "GSM685950", "GSM685951", "GSM685892", "GSM685893", "GSM685894", "GSM685895", "GSM685896", "GSM685897", "GSM685898", "GSM685899", "GSM685900", "GSM685901", "GSM685902", "GSM685903", "GSM685904", "GSM685905", "GSM685906", "GSM685907", "GSM685908", "GSM685909", "GSM685910", "GSM685911", "GSM685912", "GSM685932", "GSM685933", "GSM685934", "GSM685935", "GSM685936", "GSM685937", "GSM685938", "GSM685939", "GSM685940", "GSM685941", "GSM685922", "GSM685923", "GSM685924", "GSM685925", "GSM685926", "GSM685927", "GSM685928", "GSM685929", "GSM685930", "GSM685931" ], "type": "tissue", "id": "GDS3899_9" }, { "dataset_id": "GDS3899", "description": "4.5 months", "sample_id": [ "GSM685932", "GSM685933", "GSM685934", "GSM685935", "GSM685936", "GSM685937", "GSM685938", "GSM685939", "GSM685940", "GSM685941" ], "type": "age", "id": "GDS3899_10" }, { "dataset_id": "GDS3899", "description": "10.5 months", "sample_id": [ "GSM685913", "GSM685914", "GSM685915", "GSM685916", "GSM685917", "GSM685918", "GSM685919", "GSM685920", "GSM685921", "GSM685942", "GSM685943", "GSM685944", "GSM685945", "GSM685946", "GSM685947", "GSM685948", "GSM685949", "GSM685950", "GSM685951", "GSM685892", "GSM685893", "GSM685894", "GSM685895", "GSM685896", "GSM685897", "GSM685898", "GSM685899", "GSM685900", "GSM685901", "GSM685902", "GSM685903", "GSM685904", "GSM685905", "GSM685906", "GSM685907", "GSM685908", "GSM685909", "GSM685910", "GSM685911", "GSM685912", "GSM685922", "GSM685923", "GSM685924", "GSM685925", "GSM685926", "GSM685927", "GSM685928", "GSM685929", "GSM685930", "GSM685931", "GSM685972", "GSM685973", "GSM685974", "GSM685975", "GSM685976", "GSM685977", "GSM685978", "GSM685979", "GSM685990", "GSM685991", "GSM685992", "GSM685993", "GSM685994", "GSM685995", "GSM685996", "GSM685997", "GSM685998", "GSM685999", "GSM685952", "GSM685953", "GSM685954", "GSM685955", "GSM685956", "GSM685957", "GSM685958", "GSM685959", "GSM685960", "GSM685961", "GSM685962", "GSM685963", "GSM685964", "GSM685965", "GSM685966", "GSM685967", "GSM685968", "GSM685969", "GSM685970", "GSM685971", "GSM685980", "GSM685981", "GSM685982", "GSM685983", "GSM685984", "GSM685985", "GSM685986", "GSM685987", "GSM685988", "GSM685989" ], "type": "age", "id": "GDS3899_11" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3899", "version": 1.0, "instances": "108", "variables": 26686, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3899.tab", "compression": "gz" } ], [ [ "GDS39.tab" ], { "title": "Cell cycle, elutriation time course", "description": "Culture synchronized by elutriation and samples removed at several time points up to 6.5 h. Included as part of a comprehensive identification of cell cycle-regulated genes.", "type": "Expression profiling by array", "pubmed_id": [ "9843569", "10963673" ], "platform": "GPL59", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7680", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "log ratio", "reference_series": "GSE24", "order": "ordered", "update_date": "Dec 17 2012", "subsets": [ { "dataset_id": "GDS39", "description": "0 hour", "sample_id": [ "GSM940" ], "type": "time", "id": "GDS39_1" }, { "dataset_id": "GDS39", "description": "0.5 hour", "sample_id": [ "GSM942" ], "type": "time", "id": "GDS39_2" }, { "dataset_id": "GDS39", "description": "1 hour", "sample_id": [ "GSM910" ], "type": "time", "id": "GDS39_3" }, { "dataset_id": "GDS39", "description": "1.5 hour", "sample_id": [ "GSM969" ], "type": "time", "id": "GDS39_4" }, { "dataset_id": "GDS39", "description": "2 hour", "sample_id": [ "GSM970" ], "type": "time", "id": "GDS39_5" }, { "dataset_id": "GDS39", "description": "2.5 hour", "sample_id": [ "GSM973" ], "type": "time", "id": "GDS39_6" }, { "dataset_id": "GDS39", "description": "3 hour", "sample_id": [ "GSM974" ], "type": "time", "id": "GDS39_7" }, { "dataset_id": "GDS39", "description": "3.5 hour", "sample_id": [ "GSM975" ], "type": "time", "id": "GDS39_8" }, { "dataset_id": "GDS39", "description": "4 hour", "sample_id": [ "GSM976" ], "type": "time", "id": "GDS39_9" }, { "dataset_id": "GDS39", "description": "4.5 hour", "sample_id": [ "GSM984" ], "type": "time", "id": "GDS39_10" }, { "dataset_id": "GDS39", "description": "5 hour", "sample_id": [ "GSM977" ], "type": "time", "id": "GDS39_11" }, { "dataset_id": "GDS39", "description": "5.5 hour", "sample_id": [ "GSM903" ], "type": "time", "id": "GDS39_12" }, { "dataset_id": "GDS39", "description": "6 hour", "sample_id": [ "GSM906" ], "type": "time", "id": "GDS39_13" }, { "dataset_id": "GDS39", "description": "6.5 hour", "sample_id": [ "GSM985" ], "type": "time", "id": "GDS39_14" } ], "taxid": "4932", "genes": 6179, "aggregation_function": "mean", "name": "GDS39", "version": 1.0, "instances": "14", "variables": 6181, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS39.tab", "compression": "gz" } ], [ [ "GDS390.tab" ], { "title": "Idiopathic thrombocytopenic purpura", "description": "Idiopathic thrombocytopenic purpura (ITP) is an autoimmune hematologic disorder. CD3+ cells were studied in duplicate from healthy controls, patients with active ITP and patients with ITP in remission.", "type": "Expression profiling by array", "pubmed_id": "12937414", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE574", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS390", "description": "active ITP", "sample_id": [ "GSM8814", "GSM8815" ], "type": "disease state", "id": "GDS390_1" }, { "dataset_id": "GDS390", "description": "control", "sample_id": [ "GSM8816", "GSM8817" ], "type": "disease state", "id": "GDS390_2" }, { "dataset_id": "GDS390", "description": "ITP in remission", "sample_id": [ "GSM8818", "GSM8819" ], "type": "disease state", "id": "GDS390_3" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS390", "version": 1.0, "instances": "6", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS390.tab", "compression": "gz" } ], [ [ "GDS3900.tab" ], { "title": "Fear conditioning effect on hybrid mouse diversity panel: hippocampus and striatum", "description": "Analysis of whole hippocampus and striatum from Hybrid Mouse Diversity Panel (HMDP) males exposed to a fear conditioning procedure. The HMDP panel 29 classical inbred strains and 71 recombinant inbred strains. Results provide insight into molecular mechanisms underlying fear phenotypes.", "type": "Expression profiling by array", "pubmed_id": "21410935", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "198", "value_type": "count", "reference_series": "GSE26500", "order": "none", "update_date": "Dec 15 2011", "subsets": [ { "dataset_id": "GDS3900", "description": "hippocampus", "sample_id": [ "GSM651441", "GSM651442", "GSM651443", "GSM651444", "GSM651445", "GSM651446", "GSM651447", "GSM651448", "GSM651449", "GSM651450", "GSM651451", "GSM651452", "GSM651453", "GSM651454", "GSM651455", "GSM651456", "GSM651457", "GSM651458", "GSM651459", "GSM651460", "GSM651461", "GSM651462", "GSM651463", "GSM651464", "GSM651465", "GSM651466", "GSM651467", "GSM651468", "GSM651469", "GSM651470", "GSM651471", "GSM651472", "GSM651473", "GSM651474", "GSM651475", "GSM651476", "GSM651477", "GSM651478", "GSM651479", "GSM651480", "GSM651481", "GSM651482", "GSM651483", "GSM651484", "GSM651485", "GSM651486", "GSM651487", "GSM651488", "GSM651489", "GSM651490", "GSM651491", "GSM651492", "GSM651493", "GSM651494", "GSM651495", "GSM651496", "GSM651497", "GSM651498", "GSM651499", "GSM651500", "GSM651501", "GSM651502", "GSM651503", "GSM651504", "GSM651505", "GSM651506", "GSM651507", "GSM651508", "GSM651509", "GSM651510", "GSM651511", "GSM651512", "GSM651513", "GSM651514", "GSM651515", "GSM651516", "GSM651517", "GSM651518", "GSM651519", "GSM651520", "GSM651521", "GSM651522", "GSM651523", "GSM651524", "GSM651525", "GSM651526", "GSM651527", "GSM651528", "GSM651529", "GSM651530", "GSM651531", "GSM651532", "GSM651533", "GSM651534", "GSM651535", "GSM651536", "GSM651537", "GSM651538", "GSM651539", "GSM651540" ], "type": "tissue", "id": "GDS3900_1" }, { "dataset_id": "GDS3900", "description": "striatum", "sample_id": [ "GSM651733", "GSM651734", "GSM651735", "GSM651736", "GSM651737", "GSM651738", "GSM651739", "GSM651740", "GSM651741", "GSM651742", "GSM651743", "GSM651744", "GSM651745", "GSM651746", "GSM651747", "GSM651748", "GSM651749", "GSM651750", "GSM651751", "GSM651752", "GSM651753", "GSM651754", "GSM651755", "GSM651756", "GSM651757", "GSM651758", "GSM651759", "GSM651760", "GSM651761", "GSM651762", "GSM651763", "GSM651764", "GSM651765", "GSM651766", "GSM651767", "GSM651768", "GSM651769", "GSM651770", "GSM651771", "GSM651772", "GSM651773", "GSM651774", "GSM651775", "GSM651776", "GSM651777", "GSM651778", "GSM651779", "GSM651780", "GSM651781", "GSM651782", "GSM651783", "GSM651784", "GSM651785", "GSM651786", "GSM651787", "GSM651788", "GSM651789", "GSM651790", "GSM651791", "GSM651792", "GSM651793", "GSM651794", "GSM651795", "GSM651796", "GSM651797", "GSM651798", "GSM651799", "GSM651800", "GSM651801", "GSM651802", "GSM651803", "GSM651804", "GSM651805", "GSM651806", "GSM651807", "GSM651808", "GSM651809", "GSM651810", "GSM651811", "GSM651812", "GSM651813", "GSM651814", "GSM651815", "GSM651816", "GSM651817", "GSM651818", "GSM651819", "GSM651820", "GSM651821", "GSM651822", "GSM651823", "GSM651824", "GSM651825", "GSM651826", "GSM651827", "GSM651828", "GSM651829", "GSM651830" ], "type": "tissue", "id": "GDS3900_2" }, { "dataset_id": "GDS3900", "description": "129X1", "sample_id": [ "GSM651441" ], "type": "strain", "id": "GDS3900_3" }, { "dataset_id": "GDS3900", "description": "AJ", "sample_id": [ "GSM651442", "GSM651734" ], "type": "strain", "id": "GDS3900_4" }, { "dataset_id": "GDS3900", "description": "AKR", "sample_id": [ "GSM651443", "GSM651735" ], "type": "strain", "id": "GDS3900_5" }, { "dataset_id": "GDS3900", "description": "AXB1/PgnJ", "sample_id": [ "GSM651444", "GSM651736" ], "type": "strain", "id": "GDS3900_6" }, { "dataset_id": "GDS3900", "description": "AXB10/PgnJ", "sample_id": [ "GSM651445", "GSM651737" ], "type": "strain", "id": "GDS3900_7" }, { "dataset_id": "GDS3900", 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"GSM651789" ], "type": "strain", "id": "GDS3900_58" }, { "dataset_id": "GDS3900", "description": "BXD36/TyJ", "sample_id": [ "GSM651498", "GSM651790" ], "type": "strain", "id": "GDS3900_59" }, { "dataset_id": "GDS3900", "description": "BXD38/TyJ", "sample_id": [ "GSM651499", "GSM651791" ], "type": "strain", "id": "GDS3900_60" }, { "dataset_id": "GDS3900", "description": "BXD39/TyJ", "sample_id": [ "GSM651500", "GSM651792" ], "type": "strain", "id": "GDS3900_61" }, { "dataset_id": "GDS3900", "description": "BXD40/TyJ", "sample_id": [ "GSM651501", "GSM651793" ], "type": "strain", "id": "GDS3900_62" }, { "dataset_id": "GDS3900", "description": "BXD42/TyJ", "sample_id": [ "GSM651502", "GSM651794" ], "type": "strain", "id": "GDS3900_63" }, { "dataset_id": "GDS3900", "description": "BXD5/TyJ", "sample_id": [ "GSM651503", "GSM651795" ], "type": "strain", "id": "GDS3900_64" }, { "dataset_id": "GDS3900", "description": "BXD6/TyJ", "sample_id": [ "GSM651504", "GSM651796" ], "type": "strain", "id": "GDS3900_65" }, { "dataset_id": "GDS3900", "description": "BXD8/TyJ", "sample_id": [ "GSM651505", "GSM651797" ], "type": "strain", "id": "GDS3900_66" }, { "dataset_id": "GDS3900", "description": "BXD9/TyJ", "sample_id": [ "GSM651506", "GSM651798" ], "type": "strain", "id": "GDS3900_67" }, { "dataset_id": "GDS3900", "description": "BXH10", "sample_id": [ "GSM651507", "GSM651799" ], "type": "strain", "id": "GDS3900_68" }, { "dataset_id": "GDS3900", "description": "BXH14", "sample_id": [ "GSM651508", "GSM651800" ], "type": "strain", "id": "GDS3900_69" }, { "dataset_id": "GDS3900", "description": "BXH19", "sample_id": [ "GSM651509", "GSM651801" ], "type": "strain", "id": "GDS3900_70" }, { "dataset_id": "GDS3900", "description": "BXH20", "sample_id": [ "GSM651510", "GSM651802" ], "type": "strain", "id": "GDS3900_71" }, { "dataset_id": "GDS3900", "description": "BXH22", "sample_id": [ "GSM651511", "GSM651803" ], "type": "strain", "id": "GDS3900_72" }, { "dataset_id": "GDS3900", "description": "BXH2", "sample_id": [ "GSM651512" ], "type": "strain", "id": "GDS3900_73" }, { "dataset_id": "GDS3900", "description": "BXH4", "sample_id": [ "GSM651513", "GSM651804" ], "type": "strain", "id": "GDS3900_74" }, { "dataset_id": "GDS3900", "description": "BXH6", "sample_id": [ "GSM651514", "GSM651805" ], "type": "strain", "id": "GDS3900_75" }, { "dataset_id": "GDS3900", "description": "BXH7", "sample_id": [ "GSM651515", "GSM651806" ], "type": "strain", "id": "GDS3900_76" }, { "dataset_id": "GDS3900", "description": "BXH8", "sample_id": [ "GSM651516", "GSM651807" ], "type": "strain", "id": "GDS3900_77" }, { "dataset_id": "GDS3900", "description": "BXH9", "sample_id": [ "GSM651517", "GSM651808" ], "type": "strain", "id": "GDS3900_78" }, { "dataset_id": "GDS3900", "description": "BalbcJ", "sample_id": [ "GSM651518", "GSM651809" ], "type": "strain", "id": "GDS3900_79" }, { "dataset_id": "GDS3900", "description": "C3H", "sample_id": [ "GSM651519", "GSM651810" ], "type": "strain", "id": "GDS3900_80" }, { "dataset_id": "GDS3900", "description": "C57L", "sample_id": [ "GSM651520", "GSM651811" ], "type": "strain", "id": "GDS3900_81" }, { "dataset_id": "GDS3900", "description": "C58", "sample_id": [ "GSM651521", "GSM651812" ], "type": "strain", "id": "GDS3900_82" }, { "dataset_id": "GDS3900", "description": "CAST", "sample_id": [ "GSM651522", "GSM651813" ], "type": "strain", "id": "GDS3900_83" }, { "dataset_id": "GDS3900", "description": "CBA", "sample_id": [ "GSM651523", "GSM651814" ], "type": "strain", "id": "GDS3900_84" }, { "dataset_id": "GDS3900", "description": "CE", "sample_id": [ "GSM651524", "GSM651815" ], "type": "strain", "id": "GDS3900_85" }, { "dataset_id": "GDS3900", "description": "DBA", "sample_id": [ "GSM651525", "GSM651816" ], "type": "strain", "id": "GDS3900_86" }, { "dataset_id": "GDS3900", "description": "FVB", "sample_id": [ "GSM651526", "GSM651817" ], "type": "strain", "id": "GDS3900_87" }, { "dataset_id": "GDS3900", "description": "I", "sample_id": [ "GSM651527", "GSM651818" ], "type": "strain", "id": "GDS3900_88" }, { "dataset_id": "GDS3900", "description": "KK", "sample_id": [ "GSM651528", "GSM651819" ], "type": "strain", "id": "GDS3900_89" }, { "dataset_id": "GDS3900", "description": "LG", "sample_id": [ "GSM651529", "GSM651820" ], "type": "strain", "id": "GDS3900_90" }, { "dataset_id": "GDS3900", "description": "LPJ", "sample_id": [ "GSM651530", "GSM651821" ], "type": "strain", "id": "GDS3900_91" }, { "dataset_id": "GDS3900", "description": "MA", "sample_id": [ "GSM651531", "GSM651822" ], "type": "strain", "id": "GDS3900_92" }, { "dataset_id": "GDS3900", "description": "NOD", "sample_id": [ "GSM651532", "GSM651823" ], "type": "strain", "id": "GDS3900_93" }, { "dataset_id": "GDS3900", "description": "NON", "sample_id": [ "GSM651533", "GSM651824" ], "type": "strain", "id": "GDS3900_94" }, { "dataset_id": "GDS3900", "description": "NZB", "sample_id": [ "GSM651534", "GSM651825" ], "type": "strain", "id": "GDS3900_95" }, { "dataset_id": "GDS3900", "description": "NZW", "sample_id": [ "GSM651535", "GSM651826" ], "type": "strain", "id": "GDS3900_96" }, { "dataset_id": "GDS3900", "description": "PL", "sample_id": [ "GSM651536", "GSM651827" ], "type": "strain", "id": "GDS3900_97" }, { "dataset_id": "GDS3900", "description": "RIII", "sample_id": [ "GSM651537", "GSM651828" ], "type": "strain", "id": "GDS3900_98" }, { "dataset_id": "GDS3900", "description": "SEA", "sample_id": [ "GSM651538" ], "type": "strain", "id": "GDS3900_99" }, { "dataset_id": "GDS3900", "description": "SM", "sample_id": [ "GSM651539", "GSM651829" ], "type": "strain", "id": "GDS3900_100" }, { "dataset_id": "GDS3900", "description": "SWR", "sample_id": [ "GSM651540", "GSM651830" ], "type": "strain", "id": "GDS3900_101" }, { "dataset_id": "GDS3900", "description": "X129X1", "sample_id": [ "GSM651733" ], "type": "strain", "id": "GDS3900_102" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3900", "version": 1.0, "instances": "198", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3900.tab", "compression": "gz" } ], [ [ "GDS3901.tab" ], { "title": "Burkitt lymphoma subtypes: lymph-node biopsies", "description": "Analysis of lymph-node biopsies representing the 3 clinical subsets of Burkitt lymphoma (BL): endemic, sporadic, and immunodeficiency-associated. Each BL subtype affects different populations and can present with different features. Results provide insight into the molecular basis of BL subtypes.", "type": "Expression profiling by array", "pubmed_id": "21245480", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE26673", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3901", "description": "child", "sample_id": [ "GSM656452", "GSM656453", "GSM656454", "GSM656455", "GSM656456", "GSM656457", "GSM656458", "GSM656459", "GSM656460", "GSM656461", "GSM656462", "GSM656463", "GSM656464" ], "type": "development stage", "id": "GDS3901_1" }, { "dataset_id": "GDS3901", "description": "adult", "sample_id": [ "GSM656465", "GSM656466", "GSM656467" ], "type": "development stage", "id": "GDS3901_2" }, { "dataset_id": "GDS3901", "description": "European patient", "sample_id": [ "GSM656465", "GSM656466", "GSM656467" ], "type": "individual", "id": "GDS3901_3" }, { "dataset_id": "GDS3901", "description": "African patient", "sample_id": [ "GSM656452", "GSM656453", "GSM656454", "GSM656455", "GSM656456", "GSM656457", "GSM656458", "GSM656459", "GSM656460", "GSM656461", "GSM656462", "GSM656463", "GSM656464" ], "type": "individual", "id": "GDS3901_4" }, { "dataset_id": "GDS3901", "description": "Endemic Burkitt lymphoma", "sample_id": [ "GSM656452", "GSM656453", "GSM656454", "GSM656455", "GSM656456", "GSM656457", "GSM656458", "GSM656459", "GSM656460", "GSM656461", "GSM656462", "GSM656463", "GSM656464" ], "type": "disease state", "id": "GDS3901_5" }, { "dataset_id": "GDS3901", "description": "Immunodeficiency associated Burkitt lymphoma", "sample_id": [ "GSM656465", "GSM656466" ], "type": "disease state", "id": "GDS3901_6" }, { "dataset_id": "GDS3901", "description": "Sporadic Burkitt lymphoma", "sample_id": [ "GSM656467" ], "type": "disease state", "id": "GDS3901_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3901", "version": 1.0, "instances": "16", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3901.tab", "compression": "gz" } ], [ [ "GDS3902.tab" ], { "title": "Chronic B-lymphocytic leukemia: peripheral blood", "description": "Analysis of peripheral blood from chronic B-lymphocytic leukemia (B-CLL) patients and healthy donors. MicroRNA miR-155 regulates hematopoietic cell development. Results provide insight into the role of miR-155 in the lymphoproliferative disorder B-CLL..", "type": "Expression profiling by array", "pubmed_id": "21296997", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE26725", "order": "none", "update_date": "Dec 15 2011", "subsets": [ { "dataset_id": "GDS3902", "description": "healthy control", "sample_id": [ "GSM658010", "GSM658011", "GSM658012", "GSM658013", "GSM658014" ], "type": "disease state", "id": "GDS3902_1" }, { "dataset_id": "GDS3902", "description": "chronic B-lymphocytic leukemia", "sample_id": [ "GSM658015", "GSM658016", "GSM658017", "GSM658018", "GSM658019", "GSM658020", "GSM658021", "GSM658022", "GSM658023", "GSM658024", "GSM658025", "GSM658026" ], "type": "disease state", "id": "GDS3902_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3902", "version": 1.0, "instances": "17", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3902.tab", "compression": "gz" } ], [ [ "GDS3903.tab" ], { "title": "Unruptured intracranial arterial aneurysm: cerebral artery", "description": "Analysis of unruptured intracranial arterial aneurysm (IAA). IAA is a cerebrovascular disorder in which weakness in a cerebral artery wall causes localized dilation and possible rupture. Results provide insight into the molecular mechanisms underlying cerebral aneurysms.", "type": "Expression profiling by array", "pubmed_id": "19752560", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE26969", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3903", "description": "normal healthy control", "sample_id": [ "GSM663769", "GSM663770", "GSM663771" ], "type": "disease state", "id": "GDS3903_1" }, { "dataset_id": "GDS3903", "description": "intracranial arterial aneurysm", "sample_id": [ "GSM663772", "GSM663773", "GSM663774" ], "type": "disease state", "id": "GDS3903_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3903", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3903.tab", "compression": "gz" } ], [ [ "GDS3904.tab" ], { "title": "Directed differentiation of embryonic stem cells and induced pluripotent stem cells", "description": "Analysis of ES cells and iPS cells before (day 0) and after (day 5) endodermal differentiation. E8.25 embryonic definitive endoderm (DE) was also examined. Results provide insight into the relative equivalency of DE derived from ES/iPS cells in vitro and authentic DE from embryos in vivo.", "type": "Expression profiling by array", "pubmed_id": "21537085", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE27087", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3904", "description": "embryonic stem cells", "sample_id": [ "GSM668564", "GSM668565", "GSM668566", "GSM668567", "GSM668568", "GSM668569", "GSM668579", "GSM668580", "GSM668581", "GSM668582", "GSM668583", "GSM668584" ], "type": "cell type", "id": "GDS3904_1" }, { "dataset_id": "GDS3904", "description": "induced pluripotent stem cells", "sample_id": [ "GSM668576", "GSM668577", "GSM668578", "GSM668585", "GSM668586", "GSM668587", "GSM668588", "GSM668589", "GSM668590", "GSM668591", "GSM668592", "GSM668593" ], "type": "cell type", "id": "GDS3904_2" }, { "dataset_id": "GDS3904", "description": "E8.25 mouse embryo", "sample_id": [ "GSM668570", "GSM668571", "GSM668572", "GSM668573", "GSM668574", "GSM668575" ], "type": "cell type", "id": "GDS3904_3" }, { "dataset_id": "GDS3904", "description": "undifferentiated", "sample_id": [ "GSM668567", "GSM668568", "GSM668569", "GSM668582", "GSM668583", "GSM668584", "GSM668585", "GSM668586", "GSM668587", "GSM668588", "GSM668589", "GSM668590" ], "type": "development stage", "id": "GDS3904_4" }, { "dataset_id": "GDS3904", "description": "definitive endoderm", "sample_id": [ "GSM668564", "GSM668565", "GSM668566", "GSM668573", "GSM668574", "GSM668575", "GSM668576", "GSM668577", "GSM668578", "GSM668579", "GSM668580", "GSM668581", "GSM668591", "GSM668592", "GSM668593" ], "type": "development stage", "id": "GDS3904_5" }, { "dataset_id": "GDS3904", "description": "C57BL/6x129SvJae", "sample_id": [ "GSM668564", "GSM668565", "GSM668566", "GSM668567", "GSM668568", "GSM668569", "GSM668576", "GSM668577", "GSM668578", "GSM668579", "GSM668580", "GSM668581", "GSM668582", "GSM668583", "GSM668584", "GSM668585", "GSM668586", "GSM668587", "GSM668588", "GSM668589", "GSM668590", "GSM668591", "GSM668592", "GSM668593" ], "type": "strain", "id": "GDS3904_6" }, { "dataset_id": "GDS3904", "description": "Swiss webster", "sample_id": [ "GSM668570", "GSM668571", "GSM668572", "GSM668573", "GSM668574", "GSM668575" ], "type": "strain", "id": "GDS3904_7" }, { "dataset_id": "GDS3904", "description": "non-definitive endoderm", "sample_id": [ "GSM668570", "GSM668571", "GSM668572" ], "type": "development stage", "id": "GDS3904_8" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3904", "version": 1.0, "instances": "30", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3904.tab", "compression": "gz" } ], [ [ "GDS3905.tab" ], { "title": "Pollinated pistils: time course", "description": "Analysis of pistils up to 8.0 hours after pollination. Unfertilized ovules were also examined. An intense pollen-pistil interaction precedes fertilization. Results provide insight into the molecular mechanisms underlying sexual plant reproduction.", "type": "Expression profiling by array", "pubmed_id": "21317340", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE27281", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3905", "description": "pistil", "sample_id": [ "GSM674593", "GSM674594", "GSM674587", "GSM674588", "GSM674589", "GSM674590", "GSM674591", "GSM674592" ], "type": "tissue", "id": "GDS3905_1" }, { "dataset_id": "GDS3905", "description": "ovule", "sample_id": [ "GSM674595", "GSM674596" ], "type": "tissue", "id": "GDS3905_2" }, { "dataset_id": "GDS3905", "description": "pollinated", "sample_id": [ "GSM674587", "GSM674588", "GSM674589", "GSM674590", "GSM674591", "GSM674592" ], "type": "protocol", "id": "GDS3905_3" }, { "dataset_id": "GDS3905", "description": "unpollinated", "sample_id": [ "GSM674593", "GSM674594" ], "type": "protocol", "id": "GDS3905_4" }, { "dataset_id": "GDS3905", "description": "unfertilized", "sample_id": [ "GSM674595", "GSM674596" ], "type": "protocol", "id": "GDS3905_5" }, { "dataset_id": "GDS3905", "description": "control", "sample_id": [ "GSM674593", "GSM674594", "GSM674595", "GSM674596" ], "type": "time", "id": "GDS3905_6" }, { "dataset_id": "GDS3905", "description": "0.5 hour", "sample_id": [ "GSM674587", "GSM674588" ], "type": "time", "id": "GDS3905_7" }, { "dataset_id": "GDS3905", "description": "3.5 hour", "sample_id": [ "GSM674589", "GSM674590" ], "type": "time", "id": "GDS3905_8" }, { "dataset_id": "GDS3905", "description": "8.0 hour", "sample_id": [ "GSM674591", "GSM674592" ], "type": "time", "id": "GDS3905_9" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3905", "version": 1.0, "instances": "10", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3905.tab", "compression": "gz" } ], [ [ "GDS3906.tab" ], { "title": "Polyubiquitin knockout effect on testis: time course", "description": "Analysis of testes from Ubb knockouts at 7 to 28 days postpartum (dpp). Loss of Ubb leads to infertility, with germ cells arrested at meiotic prophase I. Results provide insight into molecular mechanisms underlying mammalian fertility.", "type": "Expression profiling by array", "pubmed_id": "21542049", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE27568", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3906", "description": "wild type", "sample_id": [ "GSM682304", "GSM682305", "GSM682316", "GSM682317", "GSM682312", "GSM682313", "GSM682308", "GSM682309" ], "type": "genotype/variation", "id": "GDS3906_1" }, { "dataset_id": "GDS3906", "description": "Ubb-/- knockout", "sample_id": [ "GSM682302", "GSM682303", "GSM682314", "GSM682315", "GSM682310", "GSM682311", "GSM682306", "GSM682307" ], "type": "genotype/variation", "id": "GDS3906_2" }, { "dataset_id": "GDS3906", "description": "7 days postpartum", "sample_id": [ "GSM682304", "GSM682305", "GSM682302", "GSM682303" ], "type": "age", "id": "GDS3906_3" }, { "dataset_id": "GDS3906", "description": "14 days postpartum", "sample_id": [ "GSM682308", "GSM682309", "GSM682306", "GSM682307" ], "type": "age", "id": "GDS3906_4" }, { "dataset_id": "GDS3906", "description": "21 days postpartum", "sample_id": [ "GSM682312", "GSM682313", "GSM682310", "GSM682311" ], "type": "age", "id": "GDS3906_5" }, { "dataset_id": "GDS3906", "description": "28 days postpartum", "sample_id": [ "GSM682316", "GSM682317", "GSM682314", "GSM682315" ], "type": "age", "id": "GDS3906_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3906", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3906.tab", "compression": "gz" } ], [ [ "GDS3907.tab" ], { "title": "Psoriasis mouse models", "description": "Analysis of psoriatic skin from back, ear from five psoriasis models (K5-Tie2, imiquimod, K14-AREG, K5-Stat3C and K5-TGFbeta1). Psoriasis is a chronic autoimmune disease characterized by patches of red, often scaly skin. Results provide insight into molecular mechanisms underlying psoriasis.", "type": "Expression profiling by array", "pubmed_id": "21483750", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE27628", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3907", "description": "psoriasis", "sample_id": [ "GSM684688", "GSM684689", "GSM684690", "GSM684700", "GSM684701", "GSM684704", "GSM684705", "GSM684706", "GSM684676", "GSM684677", "GSM684678", "GSM684682", "GSM684683", "GSM684684", "GSM684694", "GSM684695", "GSM684696" ], "type": "disease state", "id": "GDS3907_1" }, { "dataset_id": "GDS3907", "description": "normal", "sample_id": [ "GSM684691", "GSM684692", "GSM684693", "GSM684702", "GSM684703", "GSM684707", "GSM684708", "GSM684709", "GSM684679", "GSM684680", "GSM684681", "GSM684685", "GSM684686", "GSM684687", "GSM684697", "GSM684698", "GSM684699" ], "type": "disease state", "id": "GDS3907_2" }, { "dataset_id": "GDS3907", "description": "K14-AREG", "sample_id": [ "GSM684688", "GSM684689", "GSM684690", "GSM684694", "GSM684695", "GSM684696" ], "type": "genotype/variation", "id": "GDS3907_3" }, { "dataset_id": "GDS3907", "description": "K5-Stat3C", "sample_id": [ "GSM684700", "GSM684701" ], "type": "genotype/variation", "id": "GDS3907_4" }, { "dataset_id": "GDS3907", "description": "K5-TGFbeta1", "sample_id": [ "GSM684704", "GSM684705", "GSM684706" ], "type": "genotype/variation", "id": "GDS3907_5" }, { "dataset_id": "GDS3907", "description": "K5-Tie2", "sample_id": [ "GSM684676", "GSM684677", "GSM684678" ], "type": "genotype/variation", "id": "GDS3907_6" }, { "dataset_id": "GDS3907", "description": "imiquimod (IMQ)", "sample_id": [ "GSM684682", "GSM684683", "GSM684684" ], "type": "genotype/variation", "id": "GDS3907_7" }, { "dataset_id": "GDS3907", "description": "tail skin", "sample_id": [ "GSM684697", "GSM684698", "GSM684699", "GSM684694", "GSM684695", "GSM684696" ], "type": "tissue", "id": "GDS3907_8" }, { "dataset_id": "GDS3907", "description": "back skin", "sample_id": [ "GSM684685", "GSM684686", "GSM684687", "GSM684679", "GSM684680", "GSM684681", "GSM684707", "GSM684708", "GSM684709", "GSM684702", "GSM684703", "GSM684682", "GSM684683", "GSM684684", "GSM684676", "GSM684677", "GSM684678", "GSM684704", "GSM684705", "GSM684706", "GSM684700", "GSM684701" ], "type": "tissue", "id": "GDS3907_9" }, { "dataset_id": "GDS3907", "description": "ear skin", "sample_id": [ "GSM684691", "GSM684692", "GSM684693", "GSM684688", "GSM684689", "GSM684690" ], "type": "tissue", "id": "GDS3907_10" }, { "dataset_id": "GDS3907", "description": "CD1", "sample_id": [ "GSM684676", "GSM684677", "GSM684678", "GSM684679", "GSM684680", "GSM684681" ], "type": "strain", "id": "GDS3907_11" }, { "dataset_id": "GDS3907", "description": "FVB/NCrIBR", "sample_id": [ "GSM684688", "GSM684689", "GSM684690", "GSM684691", "GSM684692", "GSM684693", "GSM684694", "GSM684695", "GSM684696", "GSM684697", "GSM684698", "GSM684699" ], "type": "strain", "id": "GDS3907_12" }, { "dataset_id": "GDS3907", "description": "C57BL/6", "sample_id": [ "GSM684682", "GSM684683", "GSM684684", "GSM684685", "GSM684686", "GSM684687" ], "type": "strain", "id": "GDS3907_13" }, { "dataset_id": "GDS3907", "description": "FVB/NHsd", "sample_id": [ "GSM684700", "GSM684701", "GSM684702", "GSM684703" ], "type": "strain", "id": "GDS3907_14" }, { "dataset_id": "GDS3907", "description": "ICR/B6D2", "sample_id": [ "GSM684704", "GSM684705", "GSM684706", "GSM684707", "GSM684708", "GSM684709" ], "type": "strain", "id": "GDS3907_15" }, { "dataset_id": "GDS3907", "description": "Stat3C_control", "sample_id": [ "GSM684702", "GSM684703" ], "type": "genotype/variation", "id": "GDS3907_16" }, { "dataset_id": "GDS3907", "description": "TGFbeta1_control", "sample_id": [ "GSM684707", "GSM684708", "GSM684709" ], "type": "genotype/variation", "id": "GDS3907_17" }, { "dataset_id": "GDS3907", "description": "Tie2_control", "sample_id": [ "GSM684679", "GSM684680", "GSM684681" ], "type": "genotype/variation", "id": "GDS3907_18" }, { "dataset_id": "GDS3907", "description": "IMQ_control", "sample_id": [ "GSM684685", "GSM684686", "GSM684687" ], "type": "genotype/variation", "id": "GDS3907_19" }, { "dataset_id": "GDS3907", "description": "AREG_control", "sample_id": [ "GSM684691", "GSM684692", "GSM684693", "GSM684697", "GSM684698", "GSM684699" ], "type": "genotype/variation", "id": "GDS3907_20" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3907", "version": 1.0, "instances": "34", "variables": 26686, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3907.tab", "compression": "gz" } ], [ [ "GDS3908.tab" ], { "title": "Hypoxia effect on HL-1 cardiomyocytes", "description": "Analysis of HL-1 cardiomyocytes subjected to hypoxia for 8 hrs. Accumulation of triglycerides in the myocardium occurs under reduced O2 conditions and is associated with impaired cardiac function. Results provide insight into molecular basis of lipid accumulation in heart under hypoxic conditions.", "type": "Expression profiling by array", "pubmed_id": "21670500", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE27975", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3908", "description": "hypoxia (1% O2)", "sample_id": [ "GSM692133", "GSM692134", "GSM692135" ], "type": "protocol", "id": "GDS3908_1" }, { "dataset_id": "GDS3908", "description": "normoxia (21% O2)", "sample_id": [ "GSM692136", "GSM692137", "GSM692138" ], "type": "protocol", "id": "GDS3908_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3908", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3908.tab", "compression": "gz" } ], [ [ "GDS3909.tab" ], { "title": "Oral mucosal adaptive immune model: time course", "description": "Analysis of tongue mucosa keratinocytes from C57BL/6J mice at 48 and 96 hrs after tongue submucosal injection with BALB/c oral keratinocytes. Results provide insight into the role of oral keratinocytes in oral adaptive immune response.", "type": "Expression profiling by array", "pubmed_id": "21676921", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE28035", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3909", "description": "unmanipulated control", "sample_id": [ "GSM693658", "GSM693659", "GSM693660" ], "type": "protocol", "id": "GDS3909_1" }, { "dataset_id": "GDS3909", "description": "oral submucosal injection", "sample_id": [ "GSM693661", "GSM693662", "GSM693663", "GSM693664", "GSM693665", "GSM693666" ], "type": "protocol", "id": "GDS3909_2" }, { "dataset_id": "GDS3909", "description": "control", "sample_id": [ "GSM693658", "GSM693659", "GSM693660" ], "type": "time", "id": "GDS3909_3" }, { "dataset_id": "GDS3909", "description": "48 hours", "sample_id": [ "GSM693661", "GSM693662", "GSM693663" ], "type": "time", "id": "GDS3909_4" }, { "dataset_id": "GDS3909", "description": "96 hours", "sample_id": [ "GSM693664", "GSM693665", "GSM693666" ], "type": "time", "id": "GDS3909_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3909", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3909.tab", "compression": "gz" } ], [ [ "GDS3910.tab" ], { "title": "Cisplatin effect on breast cancer cell line MCF-7: time course", "description": "Analysis of MCF-7 cell line treated with chemotheraputic agent cisplatin and collected when glycolysis was induced (change of ph; 8-9h) and at the beginning of cell death (change of impedance; 10-11h). Results provide insight into molecular mechanisms underlying the specific metabolic response.", "type": "Expression profiling by array", "pubmed_id": "21603599", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE28274", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3910", "description": "0 hour", "sample_id": [ "GSM699776", "GSM699777" ], "type": "time", "id": "GDS3910_1" }, { "dataset_id": "GDS3910", "description": "8-9 hours", "sample_id": [ "GSM699778", "GSM699779" ], "type": "time", "id": "GDS3910_2" }, { "dataset_id": "GDS3910", "description": "10-11 hours", "sample_id": [ "GSM699780", "GSM699781" ], "type": "time", "id": "GDS3910_3" }, { "dataset_id": "GDS3910", "description": "control", "sample_id": [ "GSM699776", "GSM699777" ], "type": "metabolism", "id": "GDS3910_4" }, { "dataset_id": "GDS3910", "description": "glycolysis induction, pH change", "sample_id": [ "GSM699778", "GSM699779" ], "type": "metabolism", "id": "GDS3910_5" }, { "dataset_id": "GDS3910", "description": "cell death initiation, impedance change", "sample_id": [ "GSM699780", "GSM699781" ], "type": "metabolism", "id": "GDS3910_6" }, { "dataset_id": "GDS3910", "description": "cisplatin", "sample_id": [ "GSM699778", "GSM699779", "GSM699780", "GSM699781" ], "type": "agent", "id": "GDS3910_7" }, { "dataset_id": "GDS3910", "description": "control", "sample_id": [ "GSM699776", "GSM699777" ], "type": "agent", "id": "GDS3910_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3910", "version": 1.0, "instances": "6", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3910.tab", "compression": "gz" } ], [ [ "GDS3911.tab" ], { "title": "StemRegenin 1 effect on hematopoietic stem cells: dose response", "description": "Analysis of hematopoietic stem cells (HSC) treated with StemRegenin 1 (SR1) and LGC006 (a less potent SR1 analog) at 30nM to 1000nM. The use of HSC transplants depends on the ability to expand these cells ex vivo. Results provide insight into molecular basis of SR1-induced ex vivo HSC expansion.", "type": "Expression profiling by array", "pubmed_id": "20688981", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE28359", "order": "ordered", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3911", "description": "StemRegenin 1 (SR1)", "sample_id": [ "GSM701153", "GSM701154", "GSM701155", "GSM701156", "GSM701157" ], "type": "agent", "id": "GDS3911_1" }, { "dataset_id": "GDS3911", "description": "LGC006 (less potent SR1 analog)", "sample_id": [ "GSM701158", "GSM701159", "GSM701160" ], "type": "agent", "id": "GDS3911_2" }, { "dataset_id": "GDS3911", "description": "0 nM", "sample_id": [ "GSM701153" ], "type": "dose", "id": "GDS3911_3" }, { "dataset_id": "GDS3911", "description": "30 nM", "sample_id": [ "GSM701154", "GSM701158" ], "type": "dose", "id": "GDS3911_4" }, { "dataset_id": "GDS3911", "description": "100 nM", "sample_id": [ "GSM701155" ], "type": "dose", "id": "GDS3911_5" }, { "dataset_id": "GDS3911", "description": "300 nM", "sample_id": [ "GSM701156", "GSM701159" ], "type": "dose", "id": "GDS3911_6" }, { "dataset_id": "GDS3911", "description": "1000 nM", "sample_id": [ "GSM701157", "GSM701160" ], "type": "dose", "id": "GDS3911_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3911", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3911.tab", "compression": "gz" } ], [ [ "GDS3912.tab" ], { "title": "Adrenocortical adenomas harboring \u03b2-catenin gene CTNNB1 mutations", "description": "Analysis of adrenocortical adenomas (AA) with \u03b2-catenin missense mutations and AAs with wild-type CTNNB1. Mutations of CTNNB1 are common in AA and adrenocortical carcinomas (ACC). Results provide insight into molecular mechanisms deregulated in adrenocortical tumors with CTNNB1 genetic alterations.", "type": "Expression profiling by array", "pubmed_id": "21565795", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE28476", "order": "none", "update_date": "Dec 16 2011", "subsets": [ { "dataset_id": "GDS3912", "description": "normal adrenal glands", "sample_id": [ "GSM703788" ], "type": "tissue", "id": "GDS3912_1" }, { "dataset_id": "GDS3912", "description": "adrenocortical adenomas", "sample_id": [ "GSM703789", "GSM703790", "GSM703791", "GSM703792", "GSM703793", "GSM703794", "GSM703795" ], "type": "tissue", "id": "GDS3912_2" }, { "dataset_id": "GDS3912", "description": "CTNNB1 mutant S45P", "sample_id": [ "GSM703789" ], "type": "genotype/variation", "id": "GDS3912_3" }, { "dataset_id": "GDS3912", "description": "CTNNB1 mutant T41A", "sample_id": [ "GSM703790" ], "type": "genotype/variation", "id": "GDS3912_4" }, { "dataset_id": "GDS3912", "description": "CTNNB1 mutant S37C", "sample_id": [ "GSM703791" ], "type": "genotype/variation", "id": "GDS3912_5" }, { "dataset_id": "GDS3912", "description": "wild type CTNNB1", "sample_id": [ "GSM703788", "GSM703792", "GSM703793", "GSM703794", "GSM703795" ], "type": "genotype/variation", "id": "GDS3912_6" }, { "dataset_id": "GDS3912", "description": "tumor secretion profile: cortisol", "sample_id": [ "GSM703789", "GSM703791", "GSM703792", "GSM703793", "GSM703794" ], "type": "other", "id": "GDS3912_7" }, { "dataset_id": "GDS3912", "description": "tumor secretion profile: aldosterone", "sample_id": [ "GSM703795", "GSM703790" ], "type": "other", "id": "GDS3912_8" }, { "dataset_id": "GDS3912", "description": "n/a", "sample_id": [ "GSM703788" ], "type": "other", "id": "GDS3912_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3912", "version": 1.0, "instances": "8", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3912.tab", "compression": "gz" } ], [ [ "GDS3913.tab" ], { "title": "Paraquat effect on Apolipoprotein D mutants: cerebellum", "description": "Analysis of cerebellum from Apolipoprotein D loss-of-function (ApoD-KO) or gain-of-function (hApoD-Tg) mutants treated with reactive oxidative stress (ROS) generator paraquat. ApoD protects the nervous system against OS. Results provide insight into ApoD-mediated response to OS.", "type": "Expression profiling by array", "pubmed_id": "21463325", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE28643", "order": "none", "update_date": "Dec 18 2011", "subsets": [ { "dataset_id": "GDS3913", "description": "untreated", "sample_id": [ "GSM709686", "GSM709687", "GSM709688", "GSM709689", "GSM709690", "GSM709691", "GSM709692", "GSM709693", "GSM709694" ], "type": "agent", "id": "GDS3913_1" }, { "dataset_id": "GDS3913", "description": "paraquat", "sample_id": [ "GSM709695", "GSM709696", "GSM709697", "GSM709698", "GSM709699", "GSM709700", "GSM709701", "GSM709702", "GSM709703" ], "type": "agent", "id": "GDS3913_2" }, { "dataset_id": "GDS3913", "description": "wild type", "sample_id": [ "GSM709686", "GSM709687", "GSM709688", "GSM709695", "GSM709696", "GSM709697" ], "type": "genotype/variation", "id": "GDS3913_3" }, { "dataset_id": "GDS3913", "description": "ApoD-KO (loss of function)", "sample_id": [ "GSM709689", "GSM709690", "GSM709691", "GSM709698", "GSM709699", "GSM709700" ], "type": "genotype/variation", "id": "GDS3913_4" }, { "dataset_id": "GDS3913", "description": "hApoD-Tg transgenic (overexpression)", "sample_id": [ "GSM709692", "GSM709693", "GSM709694", "GSM709701", "GSM709702", "GSM709703" ], "type": "genotype/variation", "id": "GDS3913_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3913", "version": 1.0, "instances": "18", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3913.tab", "compression": "gz" } ], [ [ "GDS3914.tab" ], { "title": "Intermittent and sustained hypoxia effects on lung: time course", "description": "Analysis of lungs from adult males subjected to intermittent (IH) or sustained hypoxia (SH) for up to 30 days. IH is associated with sleep-disordered breathing, and SH with parenchymal lung disorders. Results provide insight into molecular mechanisms underlying hypoxic lung response during IH or SH.", "type": "Expression profiling by array", "pubmed_id": "18826996", "platform": "GPL2890", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10752", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE8705", "order": "none", "update_date": "Dec 18 2011", "subsets": [ { "dataset_id": "GDS3914", "description": "room air", "sample_id": [ "GSM215660", "GSM215661", "GSM215662", "GSM215663", "GSM215664", "GSM215665", "GSM215666", "GSM215667", "GSM215668", "GSM215669", "GSM215670", "GSM215671", "GSM215672", "GSM215673" ], "type": "stress", "id": "GDS3914_1" }, { "dataset_id": "GDS3914", "description": "intermittent hypoxia", "sample_id": [ "GSM215674", "GSM215675", "GSM215676", "GSM215677", "GSM215678", "GSM215679", "GSM215680", "GSM215681", "GSM215682", "GSM215683", "GSM215684", "GSM215685", "GSM215686", "GSM215687", "GSM215688", "GSM215689" ], "type": "stress", "id": "GDS3914_2" }, { "dataset_id": "GDS3914", "description": "sustained hypoxia", "sample_id": [ "GSM215690", "GSM215691", "GSM215692", "GSM215693", "GSM215694", "GSM215695", "GSM215696", "GSM215697", "GSM215698", "GSM215699", "GSM215700", "GSM215701" ], "type": "stress", "id": "GDS3914_3" }, { "dataset_id": "GDS3914", "description": "control", "sample_id": [ "GSM215660", "GSM215661", "GSM215662", "GSM215663", "GSM215664", "GSM215665", "GSM215666", "GSM215667", "GSM215668", "GSM215669", "GSM215670", "GSM215671", "GSM215672", "GSM215673" ], "type": "time", "id": "GDS3914_4" }, { "dataset_id": "GDS3914", "description": "1 day", "sample_id": [ "GSM215674", "GSM215675", "GSM215676", "GSM215690", "GSM215691" ], "type": "time", "id": "GDS3914_5" }, { "dataset_id": "GDS3914", "description": "3 day", "sample_id": [ "GSM215677", "GSM215678", "GSM215692", "GSM215693" ], "type": "time", "id": "GDS3914_6" }, { "dataset_id": "GDS3914", "description": "7 day", "sample_id": [ "GSM215679", "GSM215680", "GSM215681", "GSM215682", "GSM215694", "GSM215695" ], "type": "time", "id": "GDS3914_7" }, { "dataset_id": "GDS3914", "description": "14 day", "sample_id": [ "GSM215683", "GSM215684", "GSM215685", "GSM215686", "GSM215687", "GSM215696", "GSM215697" ], "type": "time", "id": "GDS3914_8" }, { "dataset_id": "GDS3914", "description": "30 day", "sample_id": [ "GSM215688", "GSM215689", "GSM215698", "GSM215699", "GSM215700", "GSM215701" ], "type": "time", "id": "GDS3914_9" } ], "taxid": "10116", "genes": 9071, "aggregation_function": "mean", "name": "GDS3914", "version": 1.0, "instances": "42", "variables": 9074, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3914.tab", "compression": "gz" } ], [ [ "GDS3915.tab" ], { "title": "Aging and cognitive decline: hippocampus", "description": "Analysis of hippocampi from F344 males, at 5 age points across the adult lifespan, tested on the Morris water maze (MWM) task. MWM is a dorsal hippocampal-dependent, spatial memory task. MWM performance showed an age effect. Results provide insight into the molecular basis of cognitive aging.", "type": "Expression profiling by array", "pubmed_id": "19211887", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "49", "value_type": "count", "reference_series": "GSE9990", "order": "ordered", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3915", "description": "3 months", "sample_id": [ "GSM252510", "GSM252511", "GSM252512", "GSM252513", "GSM252514", "GSM252515", "GSM252516", "GSM252517", "GSM252518" ], "type": "age", "id": "GDS3915_1" }, { "dataset_id": "GDS3915", "description": "6 months", "sample_id": [ "GSM252519", "GSM252520", "GSM252521", "GSM252522", "GSM252523", "GSM252524", "GSM252525", "GSM252526", "GSM252527" ], "type": "age", "id": "GDS3915_2" }, { "dataset_id": "GDS3915", "description": "9 months", "sample_id": [ "GSM252528", "GSM252529", "GSM252530", "GSM252531", "GSM252532", "GSM252533", "GSM252534", "GSM252535", "GSM252536" ], "type": "age", "id": "GDS3915_3" }, { "dataset_id": "GDS3915", "description": "12 months", "sample_id": [ "GSM252537", "GSM252538", "GSM252539", "GSM252540", "GSM252541", "GSM252542", "GSM252543", "GSM252544", "GSM252545" ], "type": "age", "id": "GDS3915_4" }, { "dataset_id": "GDS3915", "description": "23 months", "sample_id": [ "GSM252546", "GSM252547", "GSM252548", "GSM252549", "GSM252550", "GSM252551", "GSM252552", "GSM252553", "GSM252554", "GSM252555", "GSM252556", "GSM252557", "GSM252558" ], "type": "age", "id": "GDS3915_5" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS3915", "version": 1.0, "instances": "49", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3915.tab", "compression": "gz" } ], [ [ "GDS3916.tab" ], { "title": "Recombinant human growth hormone effect on lactating mammary gland: time course", "description": "Analysis of milk fat globule from milk samples collected from normal, lactating women every 3hr for 4 days (1 day of baseline/pre-rhGH administration and 3 days of high-dose rhGH administration). Results provide insight into potential molecular mechanisms for increasing milk production.", "type": "Expression profiling by array", "pubmed_id": "21205870", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "139", "value_type": "count", "reference_series": "GSE15208", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3916", "description": "Patient 2", "sample_id": [ "GSM379827", "GSM379831", "GSM379832", "GSM379828", "GSM379833", "GSM379829", "GSM379834", "GSM379830", "GSM379835", "GSM379839", "GSM379840", "GSM379836", "GSM379841", "GSM379837", "GSM379842", "GSM379838", "GSM379843", "GSM379847", "GSM379848", "GSM379844", "GSM379849", "GSM379845", "GSM379850", "GSM379846", "GSM379853", "GSM379851", "GSM379854", "GSM379852" ], "type": "individual", "id": "GDS3916_1" }, { "dataset_id": "GDS3916", "description": "Patient 3", "sample_id": [ "GSM379799", "GSM379803", "GSM379804", "GSM379800", "GSM379805", "GSM379801", "GSM379806", "GSM379802", "GSM379807", "GSM379811", "GSM379812", "GSM379808", "GSM379813", "GSM379809", "GSM379814", "GSM379810", "GSM379815", "GSM379819", "GSM379820", "GSM379816", "GSM379821", "GSM379817", "GSM379822", "GSM379818", "GSM379825", "GSM379823", "GSM379826", "GSM379824" ], "type": "individual", "id": "GDS3916_2" }, { "dataset_id": "GDS3916", "description": "Patient 4", "sample_id": [ "GSM379744", "GSM379748", "GSM379749", "GSM379745", "GSM379750", "GSM379746", "GSM379751", "GSM379747", "GSM379752", "GSM379756", "GSM379753", "GSM379757", "GSM379754", "GSM379758", "GSM379755", "GSM379759", "GSM379763", "GSM379764", "GSM379760", "GSM379765", "GSM379761", "GSM379766", "GSM379762", "GSM379769", "GSM379767", "GSM379770", "GSM379768" ], "type": "individual", "id": "GDS3916_3" }, { "dataset_id": "GDS3916", "description": "Patient 5", "sample_id": [ "GSM379771", "GSM379775", "GSM379776", "GSM379772", "GSM379777", "GSM379773", "GSM379778", "GSM379774", "GSM379779", "GSM379783", "GSM379784", "GSM379780", "GSM379785", "GSM379781", "GSM379786", "GSM379782", "GSM379787", "GSM379791", "GSM379792", "GSM379788", "GSM379793", "GSM379789", "GSM379794", "GSM379790", "GSM379797", "GSM379795", "GSM379798", "GSM379796" ], "type": "individual", "id": "GDS3916_4" }, { "dataset_id": "GDS3916", "description": "Patient 6", "sample_id": [ "GSM379716", "GSM379720", "GSM379721", "GSM379717", "GSM379722", "GSM379718", "GSM379723", "GSM379719", "GSM379724", "GSM379728", "GSM379729", "GSM379725", "GSM379730", "GSM379726", "GSM379731", "GSM379727", "GSM379732", "GSM379736", "GSM379737", "GSM379733", "GSM379738", "GSM379734", "GSM379739", "GSM379735", "GSM379742", "GSM379740", "GSM379743", "GSM379741" ], "type": "individual", "id": "GDS3916_5" }, { "dataset_id": "GDS3916", "description": "day 0, 2AM", "sample_id": [ "GSM379832", "GSM379804", "GSM379749", "GSM379776", "GSM379721" ], "type": "time", "id": "GDS3916_6" }, { "dataset_id": "GDS3916", "description": "day 0, 5AM", "sample_id": [ "GSM379833", "GSM379805", "GSM379750", "GSM379777", "GSM379722" ], "type": "time", "id": "GDS3916_7" }, { "dataset_id": "GDS3916", "description": "day 0, 8AM", "sample_id": [ "GSM379834", "GSM379806", "GSM379751", "GSM379778", "GSM379723" ], "type": "time", "id": "GDS3916_8" }, { "dataset_id": "GDS3916", "description": "day 0, 11AM", "sample_id": [ "GSM379827", "GSM379799", "GSM379744", "GSM379771", "GSM379716" ], "type": "time", "id": "GDS3916_9" }, { "dataset_id": "GDS3916", "description": "day 0, 2PM", "sample_id": [ "GSM379828", "GSM379800", "GSM379745", "GSM379772", "GSM379717" ], "type": "time", "id": "GDS3916_10" }, { "dataset_id": "GDS3916", "description": "day 0, 5PM", "sample_id": [ "GSM379829", "GSM379801", "GSM379746", "GSM379773", "GSM379718" ], "type": "time", "id": "GDS3916_11" }, { "dataset_id": "GDS3916", "description": "day 0, 8 PM", "sample_id": [ "GSM379830", "GSM379802", "GSM379747", "GSM379774", "GSM379719" ], "type": "time", "id": "GDS3916_12" }, { "dataset_id": "GDS3916", "description": "day 0, 11PM", "sample_id": [ "GSM379831", "GSM379803", "GSM379748", "GSM379775", "GSM379720" ], "type": "time", "id": "GDS3916_13" }, { "dataset_id": "GDS3916", "description": "day 1, 2AM", "sample_id": [ "GSM379840", "GSM379812", "GSM379784", "GSM379729" ], "type": "time", "id": "GDS3916_14" }, { "dataset_id": "GDS3916", "description": "day 1, 5AM", "sample_id": [ "GSM379841", "GSM379813", "GSM379757", "GSM379785", "GSM379730" ], "type": "time", "id": "GDS3916_15" }, { "dataset_id": "GDS3916", "description": "day 1, 8AM", "sample_id": [ "GSM379842", "GSM379814", "GSM379758", "GSM379786", "GSM379731" ], "type": "time", "id": "GDS3916_16" }, { "dataset_id": "GDS3916", "description": "day 1, 11AM", "sample_id": [ "GSM379835", "GSM379807", "GSM379752", "GSM379779", "GSM379724" ], "type": "time", "id": "GDS3916_17" }, { "dataset_id": "GDS3916", "description": "day 1, 2PM", "sample_id": [ "GSM379836", "GSM379808", "GSM379753", "GSM379780", "GSM379725" ], "type": "time", "id": "GDS3916_18" }, { "dataset_id": "GDS3916", "description": "day 1, 5PM", "sample_id": [ "GSM379837", "GSM379809", "GSM379754", "GSM379781", "GSM379726" ], "type": "time", "id": "GDS3916_19" }, { "dataset_id": "GDS3916", "description": "day 1, 8PM", "sample_id": [ "GSM379838", "GSM379810", "GSM379755", "GSM379782", "GSM379727" ], "type": "time", "id": "GDS3916_20" }, { "dataset_id": "GDS3916", "description": "day 1, 11PM", "sample_id": [ "GSM379839", "GSM379811", "GSM379756", "GSM379783", "GSM379728" ], "type": "time", "id": "GDS3916_21" }, { "dataset_id": "GDS3916", "description": "day 2, 2AM", "sample_id": [ "GSM379848", "GSM379820", "GSM379764", "GSM379792", "GSM379737" ], "type": "time", "id": "GDS3916_22" }, { "dataset_id": "GDS3916", "description": "day 2, 5AM", "sample_id": [ "GSM379849", "GSM379821", "GSM379765", "GSM379793", "GSM379738" ], "type": "time", "id": "GDS3916_23" }, { "dataset_id": "GDS3916", "description": "day 2, 8AM", "sample_id": [ "GSM379850", "GSM379822", "GSM379766", "GSM379794", "GSM379739" ], "type": "time", "id": "GDS3916_24" }, { "dataset_id": "GDS3916", "description": "day 2, 11AM", "sample_id": [ "GSM379843", "GSM379815", "GSM379759", "GSM379787", "GSM379732" ], "type": "time", "id": "GDS3916_25" }, { "dataset_id": "GDS3916", "description": "day 2, 2PM", "sample_id": [ "GSM379844", "GSM379816", "GSM379760", "GSM379788", "GSM379733" ], "type": "time", "id": "GDS3916_26" }, { "dataset_id": "GDS3916", "description": "day 2, 5PM", "sample_id": [ "GSM379845", "GSM379817", "GSM379761", "GSM379789", "GSM379734" ], "type": "time", "id": "GDS3916_27" }, { "dataset_id": "GDS3916", "description": "day 2, 8PM", "sample_id": [ "GSM379846", "GSM379818", "GSM379762", "GSM379790", "GSM379735" ], "type": "time", "id": "GDS3916_28" }, { "dataset_id": "GDS3916", "description": "day 2, 11PM", "sample_id": [ "GSM379847", "GSM379819", "GSM379763", "GSM379791", "GSM379736" ], "type": "time", "id": "GDS3916_29" }, { "dataset_id": "GDS3916", "description": "day 3, 2AM", "sample_id": [ "GSM379853", "GSM379825", "GSM379769", "GSM379797", "GSM379742" ], "type": "time", "id": "GDS3916_30" }, { "dataset_id": "GDS3916", "description": "day 3, 8AM", "sample_id": [ "GSM379854", "GSM379826", "GSM379770", "GSM379798", "GSM379743" ], "type": "time", "id": "GDS3916_31" }, { "dataset_id": "GDS3916", "description": "day 3, 2PM", "sample_id": [ "GSM379851", "GSM379823", "GSM379767", "GSM379795", "GSM379740" ], "type": "time", "id": "GDS3916_32" }, { "dataset_id": "GDS3916", "description": "day 3, 8PM", "sample_id": [ "GSM379852", "GSM379824", "GSM379768", "GSM379796", "GSM379741" ], "type": "time", "id": "GDS3916_33" }, { "dataset_id": "GDS3916", "description": "control", "sample_id": [ "GSM379827", "GSM379799", "GSM379744", "GSM379771", "GSM379716", "GSM379828", "GSM379800", "GSM379745", "GSM379772", "GSM379717", "GSM379829", "GSM379801", "GSM379746", "GSM379773", "GSM379718", "GSM379830", "GSM379802", "GSM379747", "GSM379774", "GSM379719", "GSM379831", "GSM379803", "GSM379748", "GSM379775", "GSM379720", "GSM379832", "GSM379804", "GSM379749", "GSM379776", "GSM379721", "GSM379833", "GSM379805", "GSM379750", "GSM379777", "GSM379722", "GSM379834", "GSM379806", "GSM379751", "GSM379778", "GSM379723" ], "type": "agent", "id": "GDS3916_34" }, { "dataset_id": "GDS3916", "description": "recombinant human growth hormone", "sample_id": [ "GSM379835", "GSM379807", "GSM379752", "GSM379779", "GSM379724", "GSM379836", "GSM379808", "GSM379753", "GSM379780", "GSM379725", "GSM379837", "GSM379809", "GSM379754", "GSM379781", "GSM379726", "GSM379838", "GSM379810", "GSM379755", "GSM379782", "GSM379727", "GSM379839", "GSM379811", "GSM379756", "GSM379783", "GSM379728", "GSM379840", "GSM379812", "GSM379784", "GSM379729", "GSM379841", "GSM379813", "GSM379757", "GSM379785", "GSM379730", "GSM379842", "GSM379814", "GSM379758", "GSM379786", "GSM379731", "GSM379843", "GSM379815", "GSM379759", "GSM379787", "GSM379732", "GSM379844", "GSM379816", "GSM379760", "GSM379788", "GSM379733", "GSM379845", "GSM379817", "GSM379761", "GSM379789", "GSM379734", "GSM379846", "GSM379818", "GSM379762", "GSM379790", "GSM379735", "GSM379847", "GSM379819", "GSM379763", "GSM379791", "GSM379736", "GSM379848", "GSM379820", "GSM379764", "GSM379792", "GSM379737", "GSM379849", "GSM379821", "GSM379765", "GSM379793", "GSM379738", "GSM379850", "GSM379822", "GSM379766", "GSM379794", "GSM379739", "GSM379851", "GSM379823", "GSM379767", "GSM379795", "GSM379740", "GSM379852", "GSM379824", "GSM379768", "GSM379796", "GSM379741", "GSM379853", "GSM379825", "GSM379769", "GSM379797", "GSM379742", "GSM379854", "GSM379826", "GSM379770", "GSM379798", "GSM379743" ], "type": "agent", "id": "GDS3916_35" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS3916", "version": 1.0, "instances": "139", "variables": 18871, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3916.tab", "compression": "gz" } ], [ [ "GDS3917.tab" ], { "title": "Various central nervous system regions of adult inbred strain", "description": "Analysis of 51 regions with distinct functions in the central nervous system (CNS) microdissected from 7 to 8 week-old Balb/c males. Each region sampled every 4 h for 24 h then pooled. Results provide insight into molecular mechanisms underlying distinct functional regions in the adult brain.", "type": "Expression profiling by array", "pubmed_id": "21858037", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "102", "value_type": "transformed count", "reference_series": "GSE16496", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3917", "description": "amygdala anterior", "sample_id": [ "GSM414541", "GSM414542" ], "type": "tissue", "id": "GDS3917_1" }, { "dataset_id": "GDS3917", "description": "amygdaloid complex (posterior)", "sample_id": [ "GSM414543", "GSM414544" ], "type": "tissue", "id": "GDS3917_2" }, { "dataset_id": "GDS3917", "description": "arcuate hypothalamic nucleus", "sample_id": [ "GSM414587", "GSM414588" ], "type": "tissue", "id": "GDS3917_3" }, { "dataset_id": "GDS3917", "description": "CA1 (hippocampus)", "sample_id": [ "GSM414535", "GSM414536" ], "type": "tissue", "id": "GDS3917_4" }, { "dataset_id": "GDS3917", "description": "CA2 / CA3 (hippocampus)", "sample_id": [ "GSM414537", "GSM414538" ], "type": "tissue", "id": "GDS3917_5" }, { "dataset_id": "GDS3917", "description": "caudate putamen lateral", "sample_id": [ "GSM414547", "GSM414548" ], "type": "tissue", "id": "GDS3917_6" }, { "dataset_id": "GDS3917", "description": "caudate putamen medial", "sample_id": [ "GSM414549", "GSM414550" ], "type": "tissue", "id": "GDS3917_7" }, { "dataset_id": "GDS3917", "description": "cerebellar cortex lobe", "sample_id": [ "GSM414609", "GSM414610" ], "type": "tissue", "id": "GDS3917_8" }, { "dataset_id": "GDS3917", "description": "cerebellar nucleus", "sample_id": [ "GSM414611", "GSM414612" ], "type": "tissue", "id": "GDS3917_9" }, { "dataset_id": "GDS3917", "description": "cerebellar cortex vermis", "sample_id": [ "GSM414607", "GSM414608" ], "type": "tissue", "id": "GDS3917_10" }, { "dataset_id": "GDS3917", "description": "cerebral cortex cingulate", "sample_id": [ "GSM414523", "GSM414524" ], "type": "tissue", "id": "GDS3917_11" }, { "dataset_id": "GDS3917", "description": "cerebral cortex motor", "sample_id": [ "GSM414521", "GSM414522" ], "type": "tissue", "id": "GDS3917_12" }, { "dataset_id": "GDS3917", "description": "dentate gyrus (hippocampus)", "sample_id": [ "GSM414539", "GSM414540" ], "type": "tissue", "id": "GDS3917_13" }, { "dataset_id": "GDS3917", "description": "dorsomedial hypothalamic nucleus", "sample_id": [ "GSM414583", "GSM414584" ], "type": "tissue", "id": "GDS3917_14" }, { "dataset_id": "GDS3917", "description": "globus pallidus", "sample_id": [ "GSM414545", "GSM414546" ], "type": "tissue", "id": "GDS3917_15" }, { "dataset_id": "GDS3917", "description": "habenular nucleus", "sample_id": [ "GSM414561", "GSM414562" ], "type": "tissue", "id": "GDS3917_16" }, { "dataset_id": "GDS3917", "description": "inferior colliculus", "sample_id": [ "GSM414595", "GSM414596" ], "type": "tissue", "id": "GDS3917_17" }, { "dataset_id": "GDS3917", "description": "lateral geniculate body", "sample_id": [ "GSM414557", "GSM414558" ], "type": "tissue", "id": "GDS3917_18" }, { "dataset_id": "GDS3917", "description": "lateral hypothalamus", "sample_id": [ "GSM414589", "GSM414590" ], "type": "tissue", "id": "GDS3917_19" }, { "dataset_id": "GDS3917", "description": "lateral septal nucleus", "sample_id": [ "GSM414517", "GSM414518" ], "type": "tissue", "id": "GDS3917_20" }, { "dataset_id": "GDS3917", "description": "mediodorsal thalamic nucleus", "sample_id": [ "GSM414551", "GSM414552" ], "type": "tissue", "id": "GDS3917_21" }, { "dataset_id": "GDS3917", "description": "median eminence", "sample_id": [ "GSM414567", "GSM414568" ], "type": "tissue", "id": "GDS3917_22" }, { "dataset_id": "GDS3917", "description": "medial geniculate nucleus", "sample_id": [ "GSM414559", "GSM414560" ], "type": "tissue", "id": "GDS3917_23" }, { "dataset_id": "GDS3917", "description": "medial preoptic area", "sample_id": [ "GSM414573", "GSM414574" ], "type": "tissue", "id": "GDS3917_24" }, { "dataset_id": "GDS3917", "description": "medial vestibular nucleus", "sample_id": [ "GSM414605", "GSM414606" ], "type": "tissue", "id": "GDS3917_25" }, { "dataset_id": "GDS3917", "description": "mammillary body", "sample_id": [ "GSM414565", "GSM414566" ], "type": "tissue", "id": "GDS3917_26" }, { "dataset_id": "GDS3917", "description": "olfactory bulb anterior", "sample_id": [ "GSM414525", "GSM414526" ], "type": "tissue", "id": "GDS3917_27" }, { "dataset_id": "GDS3917", "description": "olfactory bulb posterior", "sample_id": [ "GSM414527", "GSM414528" ], "type": "tissue", "id": "GDS3917_28" }, { "dataset_id": "GDS3917", "description": "periaqueductal gray", "sample_id": [ "GSM414591", "GSM414592" ], "type": "tissue", "id": "GDS3917_29" }, { "dataset_id": "GDS3917", "description": "paraventricular hypothalamic nucleus", "sample_id": [ "GSM414577", "GSM414578" ], "type": "tissue", "id": "GDS3917_30" }, { "dataset_id": "GDS3917", "description": "corpus pineal", "sample_id": [ "GSM414563", "GSM414564" ], "type": "tissue", "id": "GDS3917_31" }, { "dataset_id": "GDS3917", "description": "piriform cortex", "sample_id": [ "GSM414529", "GSM414530" ], "type": "tissue", "id": "GDS3917_32" }, { "dataset_id": "GDS3917", "description": "pituitary", "sample_id": [ "GSM414569", "GSM414570" ], "type": "tissue", "id": "GDS3917_33" }, { "dataset_id": "GDS3917", "description": "pontine nucleus", "sample_id": [ "GSM414603", "GSM414604" ], "type": "tissue", "id": "GDS3917_34" }, { "dataset_id": "GDS3917", "description": "retrosplenial cortex", "sample_id": [ "GSM414519", "GSM414520" ], "type": "tissue", "id": "GDS3917_35" }, { "dataset_id": "GDS3917", "description": "retina", "sample_id": [ "GSM414617", "GSM414618" ], "type": "tissue", "id": "GDS3917_36" }, { "dataset_id": "GDS3917", "description": "suprachiasmatic nucleus", "sample_id": [ "GSM414571", "GSM414572" ], "type": "tissue", "id": "GDS3917_37" }, { "dataset_id": "GDS3917", "description": "superior colliculus", "sample_id": [ "GSM414593", "GSM414594" ], "type": "tissue", "id": "GDS3917_38" }, { "dataset_id": "GDS3917", "description": "substantia nigra", "sample_id": [ "GSM414599", "GSM414600" ], "type": "tissue", "id": "GDS3917_39" }, { "dataset_id": "GDS3917", "description": "supraoptic nucleus", "sample_id": [ "GSM414575", "GSM414576" ], "type": "tissue", "id": "GDS3917_40" }, { "dataset_id": "GDS3917", "description": "subparaventricular zone dorsal", "sample_id": [ "GSM414581", "GSM414582" ], "type": "tissue", "id": "GDS3917_41" }, { "dataset_id": "GDS3917", "description": "subparaventricular zone ventral", "sample_id": [ "GSM414579", "GSM414580" ], "type": "tissue", "id": "GDS3917_42" }, { "dataset_id": "GDS3917", "description": "dorsal tegmental nucleus", "sample_id": [ "GSM414601", "GSM414602" ], "type": "tissue", "id": "GDS3917_43" }, { "dataset_id": "GDS3917", "description": "olfactory tubercle", "sample_id": [ "GSM414531", "GSM414532" ], "type": "tissue", "id": "GDS3917_44" }, { "dataset_id": "GDS3917", "description": "ventral anterior thalamic nucleus", "sample_id": [ "GSM414553", "GSM414554" ], "type": "tissue", "id": "GDS3917_45" }, { "dataset_id": "GDS3917", "description": "ventromedial hypothalamic nucleus", "sample_id": [ "GSM414585", "GSM414586" ], "type": "tissue", "id": "GDS3917_46" }, { "dataset_id": "GDS3917", "description": "ventral posterolateral thalamic nucleus", "sample_id": [ "GSM414555", "GSM414556" ], "type": "tissue", "id": "GDS3917_47" }, { "dataset_id": "GDS3917", "description": "ventral tegmental area", "sample_id": [ "GSM414597", "GSM414598" ], "type": "tissue", "id": "GDS3917_48" }, { "dataset_id": "GDS3917", "description": "spinal cord anterior", "sample_id": [ "GSM414613", "GSM414614" ], "type": "tissue", "id": "GDS3917_49" }, { "dataset_id": "GDS3917", "description": "spinal cord posterior", "sample_id": [ "GSM414615", "GSM414616" ], "type": "tissue", "id": "GDS3917_50" }, { "dataset_id": "GDS3917", "description": "ventral subiculum", "sample_id": [ "GSM414533", "GSM414534" ], "type": "tissue", "id": "GDS3917_51" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3917", "version": 1.0, "instances": "102", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3917.tab", "compression": "gz" } ], [ [ "GDS3918.tab" ], { "title": "Salt stress effect on mannitol-producing, salt-tolerant M6PR transgenic plant: leaf", "description": "Analysis of leaf from mannose-6-phosphate reductase (M6PR) transgenic plants subjected to salt stress (100mM NaCl). M6PR transgenics were dramatically more salt tolerant relative to the wild type. Results provide insight into molecular mechanisms of mannitol-enhanced, stress tolerance in plants.", "type": "Expression profiling by array", "pubmed_id": "21821598", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE18217", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3918", "description": "M6PR transgenic", "sample_id": [ "GSM455422", "GSM455423", "GSM455424", "GSM455425" ], "type": "genotype/variation", "id": "GDS3918_1" }, { "dataset_id": "GDS3918", "description": "Col-WT, wild type control", "sample_id": [ "GSM455426", "GSM455427", "GSM455428", "GSM455429" ], "type": "genotype/variation", "id": "GDS3918_2" }, { "dataset_id": "GDS3918", "description": "0 mM NaCl", "sample_id": [ "GSM455422", "GSM455423", "GSM455426", "GSM455427" ], "type": "stress", "id": "GDS3918_3" }, { "dataset_id": "GDS3918", "description": "100 mM NaCl", "sample_id": [ "GSM455424", "GSM455425", "GSM455428", "GSM455429" ], "type": "stress", "id": "GDS3918_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3918", "version": 1.0, "instances": "8", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3918.tab", "compression": "gz" } ], [ [ "GDS3919.tab" ], { "title": "Severe influenza A infection: whole blood", "description": "Analysis of whole blood (WB) from critically ill influenza and bacterial pneumonia patients for up to 5 days, and WB from before and 7 days post-influenza vaccination volunteers. Results provide insight into the role of host response in influencing disease progression in influenza A infection.", "type": "Expression profiling by array", "pubmed_id": "21408152", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "81", "value_type": "count", "reference_series": "GSE20346", "order": "none", "update_date": "May 06 2013", "subsets": [ { "dataset_id": "GDS3919", "description": "severe bacterial pneumonia", "sample_id": [ "GSM509706", "GSM509707", "GSM509708", "GSM509709", "GSM509710", "GSM509711", "GSM509712", "GSM509713", "GSM509714", "GSM509715", "GSM509716", "GSM509717", "GSM509718", "GSM509719", "GSM509720", "GSM509721", "GSM509722", "GSM509723", "GSM509724", "GSM509725", "GSM509726", "GSM509727", "GSM509728", "GSM509729", "GSM509730", "GSM509731" ], "type": "disease state", "id": "GDS3919_1" }, { "dataset_id": "GDS3919", "description": "severe influenza infection", "sample_id": [ "GSM509732", "GSM509733", "GSM509734", "GSM509735", "GSM509736", "GSM509737", "GSM509738", "GSM509739", "GSM509740", "GSM509741", "GSM509742", "GSM509743", "GSM509744", "GSM509745", "GSM509746", "GSM509747", "GSM509748", "GSM509749", "GSM509750" ], "type": "disease state", "id": "GDS3919_2" }, { "dataset_id": "GDS3919", "description": "influenza vaccination", "sample_id": [ "GSM509785", "GSM509783", "GSM509781", "GSM509779", "GSM509777", "GSM509775", "GSM509773", "GSM509771", "GSM509769", "GSM509767", "GSM509765", "GSM509763", "GSM509761", "GSM509759", "GSM509757", "GSM509755", "GSM509753", "GSM509751", "GSM509786", "GSM509784", "GSM509782", "GSM509780", "GSM509778", "GSM509776", "GSM509774", "GSM509772", "GSM509770", "GSM509768", "GSM509766", "GSM509764", "GSM509762", "GSM509760", "GSM509758", "GSM509756", "GSM509754", "GSM509752" ], "type": "disease state", "id": "GDS3919_3" }, { "dataset_id": "GDS3919", "description": "day 1", "sample_id": [ "GSM509732", "GSM509736", "GSM509741", "GSM509746", "GSM509706", "GSM509711", "GSM509714", "GSM509719", "GSM509724", "GSM509729" ], "type": "time", "id": "GDS3919_4" }, { "dataset_id": "GDS3919", "description": "day 2", "sample_id": [ "GSM509733", "GSM509737", "GSM509742", "GSM509747", "GSM509707", "GSM509712", "GSM509715", "GSM509720", "GSM509725", "GSM509730" ], "type": "time", "id": "GDS3919_5" }, { "dataset_id": "GDS3919", "description": "day 3", "sample_id": [ "GSM509734", "GSM509738", "GSM509743", "GSM509748", "GSM509708", "GSM509713", "GSM509716", "GSM509721", "GSM509726", "GSM509731" ], "type": "time", "id": "GDS3919_6" }, { "dataset_id": "GDS3919", "description": "day 4", "sample_id": [ "GSM509735", "GSM509739", "GSM509744", "GSM509749", "GSM509709", "GSM509717", "GSM509722", "GSM509727" ], "type": "time", "id": "GDS3919_7" }, { "dataset_id": "GDS3919", "description": "day 5", "sample_id": [ "GSM509740", "GSM509745", "GSM509750", "GSM509710", "GSM509718", "GSM509723", "GSM509728" ], "type": "time", "id": "GDS3919_8" }, { "dataset_id": "GDS3919", "description": "pre-vaccination", "sample_id": [ "GSM509785", "GSM509783", "GSM509781", "GSM509779", "GSM509777", "GSM509775", "GSM509773", "GSM509771", "GSM509769", "GSM509767", "GSM509765", "GSM509763", "GSM509761", "GSM509759", "GSM509757", "GSM509755", "GSM509753", "GSM509751" ], "type": "time", "id": "GDS3919_9" }, { "dataset_id": "GDS3919", "description": "7 days post-vaccination", "sample_id": [ "GSM509786", "GSM509784", "GSM509782", "GSM509780", "GSM509778", "GSM509776", "GSM509774", "GSM509772", "GSM509770", "GSM509768", "GSM509766", "GSM509764", "GSM509762", "GSM509760", "GSM509758", "GSM509756", "GSM509754", "GSM509752" ], "type": "time", "id": "GDS3919_10" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS3919", "version": 1.0, "instances": "81", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3919.tab", "compression": "gz" } ], [ [ "GDS3920.tab" ], { "title": "Multiple sclerosis: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear immune cells from multiple sclerosis (MS) patients and unaffected controls. MS is an inflammatory, neurodegenerative disease. Results provide insight into the molecular mechanisms underlying MS etiology.", "type": "Expression profiling by array", "pubmed_id": "22021740", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE21942", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3920", "description": "healthy control", "sample_id": [ "GSM545818", "GSM545819", "GSM545820", "GSM545821", "GSM545822", "GSM545823", "GSM545824", "GSM545825", "GSM545826", "GSM545827", "GSM545828", "GSM545829", "GSM545830", "GSM545831", "GSM545832" ], "type": "disease state", "id": "GDS3920_1" }, { "dataset_id": "GDS3920", "description": "Multiple sclerosis", "sample_id": [ "GSM545833", "GSM545834", "GSM545835", "GSM545836", "GSM545837", "GSM545838", "GSM545839", "GSM545840", "GSM545841", "GSM545842", "GSM545843", "GSM545844", "GSM545845", "GSM545846" ], "type": "disease state", "id": "GDS3920_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3920", "version": 1.0, "instances": "29", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3920.tab", "compression": "gz" } ], [ [ "GDS3921.tab" ], { "title": "Intestinal microbiota depletion effect on colon epithelial cells", "description": "Analysis of colonic intestinal epithelial cells (IEC) from BALB/c males depleted of intestinal microbiota by antibiotic gavage treatment. IECs constitute the interface between gut microbiota and host tissue. Results provide insight into molecular mechanisms underlying bacterial-host interactiion.", "type": "Expression profiling by array", "pubmed_id": "21445311", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE22648", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3921", "description": "control", "sample_id": [ "GSM561883", "GSM561884", "GSM561885", "GSM561886", "GSM561887", "GSM561888" ], "type": "protocol", "id": "GDS3921_1" }, { "dataset_id": "GDS3921", "description": "microbiota depleted", "sample_id": [ "GSM561889", "GSM561890", "GSM561891", "GSM561892", "GSM561893" ], "type": "protocol", "id": "GDS3921_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS3921", "version": 1.0, "instances": "11", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3921.tab", "compression": "gz" } ], [ [ "GDS3922.tab" ], { "title": "Spatial and temporal development of mammalian salivary glands", "description": "Analysis of highly localized regions of salivary gland epithelia from 12.5-, 13.5-, 14-, and 15-day-old ICR embryos. Development of mouse submandibular salivary gland begins at E11.5. Results provide insight into molecular mechanisms underlying salivary gland development and differentiation.", "type": "Expression profiling by array", "pubmed_id": "21709141", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "84", "value_type": "transformed count", "reference_series": "GSE22828", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3922", "description": "embryonic day E12.5", "sample_id": [ "GSM564337", "GSM564338", "GSM564339", "GSM564340", "GSM564341", "GSM564342", "GSM564343", "GSM564344", "GSM564345", "GSM564346", "GSM564347", "GSM564348", "GSM564349", "GSM564350", "GSM564351" ], "type": "age", "id": "GDS3922_1" }, { "dataset_id": "GDS3922", "description": "embryonic day E13.5", "sample_id": [ "GSM564352", "GSM564353", "GSM564354", "GSM564355", "GSM564356", "GSM564357", "GSM564358", "GSM564359", "GSM564360", "GSM564361", "GSM564362", "GSM564363", "GSM564364", "GSM564365", "GSM564366", "GSM564367", "GSM564368", "GSM564369", "GSM564370", "GSM564371", "GSM564372", "GSM564373", "GSM564374", "GSM564375", "GSM564376" ], "type": "age", "id": "GDS3922_2" }, { "dataset_id": "GDS3922", "description": "embryonic day E14", "sample_id": [ "GSM564377", "GSM564378", "GSM564379", "GSM564380", "GSM564381", "GSM564382", "GSM564383", "GSM564384", "GSM564385", "GSM564386", "GSM564387", "GSM564388", "GSM564389", "GSM564390", "GSM564391", "GSM564392", "GSM564393", "GSM564394", "GSM564395", "GSM564396" ], "type": "age", "id": "GDS3922_3" }, { "dataset_id": "GDS3922", "description": "embryonic day E15", "sample_id": [ "GSM564397", "GSM564398", "GSM564399", "GSM564400", "GSM564401", "GSM564402", "GSM564403", "GSM564404", "GSM564405", "GSM564406", "GSM564407", "GSM564408", "GSM564409", "GSM564410", "GSM564411", "GSM564412", "GSM564413", "GSM564414", "GSM564415", "GSM564416", "GSM564417", "GSM564418", "GSM564419", "GSM564420" ], "type": "age", "id": "GDS3922_4" }, { "dataset_id": "GDS3922", "description": "secondary duct domain", "sample_id": [ "GSM564420", "GSM564419", "GSM564418", "GSM564417", "GSM564416", "GSM564415", "GSM564414", "GSM564396", "GSM564395", "GSM564394", "GSM564393", "GSM564392", "GSM564391", "GSM564390", "GSM564389", "GSM564376", "GSM564375", "GSM564374", "GSM564373", "GSM564372" ], "type": "tissue", "id": "GDS3922_5" }, { "dataset_id": "GDS3922", "description": "peripheral bud domain", "sample_id": [ "GSM564356", "GSM564355", "GSM564354", "GSM564353", "GSM564352" ], "type": "tissue", "id": "GDS3922_6" }, { "dataset_id": "GDS3922", "description": "main duct domain", "sample_id": [ "GSM564413", "GSM564412", "GSM564411", "GSM564410", "GSM564409", "GSM564408", "GSM564407", "GSM564406", "GSM564388", "GSM564387", "GSM564386", "GSM564385", "GSM564371", "GSM564370", "GSM564369", "GSM564368", "GSM564367", "GSM564366", "GSM564351", "GSM564350", "GSM564349", "GSM564348", "GSM564347" ], "type": "tissue", "id": "GDS3922_7" }, { "dataset_id": "GDS3922", "description": "cleft domain", "sample_id": [ "GSM564365", "GSM564364", "GSM564363", "GSM564362", "GSM564346", "GSM564345", "GSM564344", "GSM564343", "GSM564342" ], "type": "tissue", "id": "GDS3922_8" }, { "dataset_id": "GDS3922", "description": "central bud domain", "sample_id": [ "GSM564361", "GSM564360", "GSM564359", "GSM564358", "GSM564357" ], "type": "tissue", "id": "GDS3922_9" }, { "dataset_id": "GDS3922", "description": "bud domain", "sample_id": [ "GSM564405", "GSM564404", "GSM564403", "GSM564402", "GSM564401", "GSM564400", "GSM564399", "GSM564398", "GSM564397", "GSM564384", "GSM564383", "GSM564382", "GSM564381", "GSM564380", "GSM564379", "GSM564378", "GSM564377", "GSM564341", "GSM564340", "GSM564339", "GSM564338", "GSM564337" ], "type": "tissue", "id": "GDS3922_10" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS3922", "version": 1.0, "instances": "84", "variables": 27550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3922.tab", "compression": "gz" } ], [ [ "GDS3923.tab" ], { "title": "Soy protein diet effect on liver", "description": "Analysis of liver from Sprague-Dawley males fed 1 of 6 diets: casein, casein+isoflavone (I), soy protein (SP), SP+I, casein+tofu, or tofu. Tofu and soy protein significantly lowered serum lipid levels. Results provide insight into the molecular mechanisms underlying reduced liver lipogenesis.", "type": "Expression profiling by array", "pubmed_id": "21721588", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE23748", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3923", "description": "casein diet", "sample_id": [ "GSM586045", "GSM586046", "GSM586047", "GSM586048", "GSM586049" ], "type": "protocol", "id": "GDS3923_1" }, { "dataset_id": "GDS3923", "description": "casein + isoflavone diet", "sample_id": [ "GSM586050", "GSM586051", "GSM586052", "GSM586053", "GSM586054" ], "type": "protocol", "id": "GDS3923_2" }, { "dataset_id": "GDS3923", "description": "soy protein diet", "sample_id": [ "GSM586055", "GSM586056", "GSM586057", "GSM586058", "GSM586059" ], "type": "protocol", "id": "GDS3923_3" }, { "dataset_id": "GDS3923", "description": "soy protein + isoflavone diet", "sample_id": [ "GSM586060", "GSM586061", "GSM586062", "GSM586063", "GSM586064" ], "type": "protocol", "id": "GDS3923_4" }, { "dataset_id": "GDS3923", "description": "casein + tofu diet", "sample_id": [ "GSM586065", "GSM586066", "GSM586067", "GSM586068", "GSM586069" ], "type": "protocol", "id": "GDS3923_5" }, { "dataset_id": "GDS3923", "description": "tofu diet", "sample_id": [ "GSM586070", "GSM586071", "GSM586072", "GSM586073", "GSM586074" ], "type": "protocol", "id": "GDS3923_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3923", "version": 1.0, "instances": "30", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3923.tab", "compression": "gz" } ], [ [ "GDS3925.tab" ], { "title": "Inflammasome-compromised epidydimal white adipose response to a high fat diet", "description": "Analysis of white adipose tissue from inflammasome (IFS) Caspase 1 null (Casp1-/-) and IFS adapter null (ASC-/-) C57/Bl6 males after 16 weeks of high fat diet (HFD) feeding. The mutants were resistant to HFD-induced obesity. Results provide insight into role of IFS in obesity and insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "21876127", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE25205", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3925", "description": "Caspase 1 null (Casp1-/-)", "sample_id": [ "GSM619226", "GSM619227", "GSM619228" ], "type": "genotype/variation", "id": "GDS3925_1" }, { "dataset_id": "GDS3925", "description": "inflammasome adapter null (ASC-/-)", "sample_id": [ "GSM619233", "GSM619234", "GSM619235" ], "type": "genotype/variation", "id": "GDS3925_2" }, { "dataset_id": "GDS3925", "description": "wild type (WT) control", "sample_id": [ "GSM619229", "GSM619230", "GSM619231", "GSM619232" ], "type": "genotype/variation", "id": "GDS3925_3" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS3925", "version": 1.0, "instances": "10", "variables": 31812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3925.tab", "compression": "gz" } ], [ [ "GDS3926.tab" ], { "title": "HNF4A deficiency effect on embryonic stem cell model of hepatocyte differentiation", "description": "Analysis of H9 (WAO9) embryonic stem (ES) cells subjected to hepatic differentiation protocol. ES-derived hepatocytes depleted of nuclear hormone receptor HNF4A also examined. Results provide insight into the role of HNF4A during the formation of hepatocytes from pluripotent stem cells.", "type": "Expression profiling by array", "pubmed_id": "21852396", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE25417", "order": "none", "update_date": "Dec 19 2011", "subsets": [ { "dataset_id": "GDS3926", "description": "control", "sample_id": [ "GSM624086", "GSM624087", "GSM624089", "GSM624090", "GSM624091", "GSM624092", "GSM624094", "GSM624095", "GSM624096" ], "type": "genotype/variation", "id": "GDS3926_1" }, { "dataset_id": "GDS3926", "description": "HNF4\u03b1 knockdown", "sample_id": [ "GSM624098", "GSM624099", "GSM624100" ], "type": "genotype/variation", "id": "GDS3926_2" }, { "dataset_id": "GDS3926", "description": "5 day", "sample_id": [ "GSM624086", "GSM624087", "GSM624089" ], "type": "time", "id": "GDS3926_3" }, { "dataset_id": "GDS3926", "description": "10 day", "sample_id": [ "GSM624090", "GSM624091", "GSM624092" ], "type": "time", "id": "GDS3926_4" }, { "dataset_id": "GDS3926", "description": "15 day", "sample_id": [ "GSM624094", "GSM624095", "GSM624096" ], "type": "time", "id": "GDS3926_5" }, { "dataset_id": "GDS3926", "description": "20 day", "sample_id": [ "GSM624098", "GSM624099", "GSM624100" ], "type": "time", "id": "GDS3926_6" }, { "dataset_id": "GDS3926", "description": "definitive endoderm", "sample_id": [ "GSM624086", "GSM624087", "GSM624089" ], "type": "development stage", "id": "GDS3926_7" }, { "dataset_id": "GDS3926", "description": "hepatic specification", "sample_id": [ "GSM624090", "GSM624091", "GSM624092" ], "type": "development stage", "id": "GDS3926_8" }, { "dataset_id": "GDS3926", "description": "immature hepatocyte", "sample_id": [ "GSM624094", "GSM624095", "GSM624096" ], "type": "development stage", "id": "GDS3926_9" }, { "dataset_id": "GDS3926", "description": "mature hepatocyte", "sample_id": [ "GSM624098", "GSM624099", "GSM624100" ], "type": "development stage", "id": "GDS3926_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3926", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3926.tab", "compression": "gz" } ], [ [ "GDS3927.tab" ], { "title": "Salt stress effect on multiple genotypes: leaf", "description": "Analysis of leaf from salt-stressed plants with genotypes Wassilewskija (Ws), Columbia (Col) and single gene mutation (glabrous, gl1-1) in the Col background. Ws plants had the least salt injury. Results provide insight into molecular mechanisms underlying variation in salt stress responses.", "type": "Expression profiling by array", "pubmed_id": "21821598", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE16765", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3927", "description": "Ws", "sample_id": [ "GSM420232", "GSM420233", "GSM420234", "GSM420235" ], "type": "genotype/variation", "id": "GDS3927_1" }, { "dataset_id": "GDS3927", "description": "Col", "sample_id": [ "GSM420236", "GSM420237", "GSM420238", "GSM420239" ], "type": "genotype/variation", "id": "GDS3927_2" }, { "dataset_id": "GDS3927", "description": "Col(gl)", "sample_id": [ "GSM420240", "GSM420241", "GSM420242", "GSM420243" ], "type": "genotype/variation", "id": "GDS3927_3" }, { "dataset_id": "GDS3927", "description": "untreated", "sample_id": [ "GSM420232", "GSM420233", "GSM420236", "GSM420237", "GSM420240", "GSM420241" ], "type": "stress", "id": "GDS3927_4" }, { "dataset_id": "GDS3927", "description": "NaCl", "sample_id": [ "GSM420234", "GSM420235", "GSM420238", "GSM420239", "GSM420242", "GSM420243" ], "type": "stress", "id": "GDS3927_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3927", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3927.tab", "compression": "gz" } ], [ [ "GDS3928.tab" ], { "title": "Heavy metal effect on liver derived cell line H4-II-E-C3", "description": "Analysis of H4-II-E-C3 liver-derived cells exposed to toxic heavy metals: nickel II chloride (NiCl2), cadmium chloride (CdCl2), or sodium dichromate (Na2Cr2O7), at various concentrations (based on viability assays). Results provide insight into molecular mechanisms underlying Ni, Cd and Cr toxicity.", "type": "Expression profiling by array", "pubmed_id": "22110744", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE31503", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3928", "description": "control", "sample_id": [ "GSM782280", "GSM782281", "GSM782291", "GSM782292", "GSM782302", "GSM782303", "GSM782313", "GSM782314" ], "type": "agent", "id": "GDS3928_1" }, { "dataset_id": "GDS3928", "description": "nickel", "sample_id": [ "GSM782283", "GSM782294", "GSM782305", "GSM782316", "GSM782282", "GSM782293", "GSM782304", "GSM782315", "GSM782284", "GSM782295", "GSM782306", "GSM782317" ], "type": "agent", "id": "GDS3928_2" }, { "dataset_id": "GDS3928", "description": "cadmium", "sample_id": [ "GSM782288", "GSM782299", "GSM782310", "GSM782321", "GSM782289", "GSM782300", "GSM782311", "GSM782322", "GSM782290", "GSM782301", "GSM782312", "GSM782323" ], "type": "agent", "id": "GDS3928_3" }, { "dataset_id": "GDS3928", "description": "chromium", "sample_id": [ "GSM782285", "GSM782296", "GSM782307", "GSM782318", "GSM782286", "GSM782297", "GSM782308", "GSM782319", "GSM782287", "GSM782298", "GSM782309", "GSM782320" ], "type": "agent", "id": "GDS3928_4" }, { "dataset_id": "GDS3928", "description": "control", "sample_id": [ "GSM782314", "GSM782303", "GSM782292", "GSM782281", "GSM782313", "GSM782302", "GSM782291", "GSM782280" ], "type": "dose", "id": "GDS3928_5" }, { "dataset_id": "GDS3928", "description": "0.2 \u00b5M", "sample_id": [ "GSM782321", "GSM782310", "GSM782299", "GSM782288" ], "type": "dose", "id": "GDS3928_6" }, { "dataset_id": "GDS3928", "description": "0.275 \u00b5M", "sample_id": [ "GSM782318", "GSM782307", "GSM782296", "GSM782285" ], "type": "dose", "id": "GDS3928_7" }, { "dataset_id": "GDS3928", "description": "0.55 \u00b5M", "sample_id": [ "GSM782322", "GSM782311", "GSM782300", "GSM782289" ], "type": "dose", "id": "GDS3928_8" }, { "dataset_id": "GDS3928", "description": "1 \u00b5M", "sample_id": [ "GSM782319", "GSM782308", "GSM782297", "GSM782286" ], "type": "dose", "id": "GDS3928_9" }, { "dataset_id": "GDS3928", "description": "1.2 \u00b5M", "sample_id": [ "GSM782323", "GSM782312", "GSM782301", "GSM782290" ], "type": "dose", "id": "GDS3928_10" }, { "dataset_id": "GDS3928", "description": "10 \u00b5M", "sample_id": [ "GSM782320", "GSM782309", "GSM782298", "GSM782287" ], "type": "dose", "id": "GDS3928_11" }, { "dataset_id": "GDS3928", "description": "40 \u00b5M", "sample_id": [ "GSM782315", "GSM782304", "GSM782293", "GSM782282" ], "type": "dose", "id": "GDS3928_12" }, { "dataset_id": "GDS3928", "description": "140 \u00b5M", "sample_id": [ "GSM782316", "GSM782305", "GSM782294", "GSM782283" ], "type": "dose", "id": "GDS3928_13" }, { "dataset_id": "GDS3928", "description": "400 \u00b5M", "sample_id": [ "GSM782317", "GSM782306", "GSM782295", "GSM782284" ], "type": "dose", "id": "GDS3928_14" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3928", "version": 1.0, "instances": "44", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3928.tab", "compression": "gz" } ], [ [ "GDS3929.tab" ], { "title": "Tobacco smoke effect on maternal and fetal cells", "description": "Analysis of peripheral blood leukocytes and placenta of pregnant smokers. Umbilical cord blood leukocytes of their newborns also examined. Maternal smoking has a negative effect on all stages of pregnancy. Results provide insight into molecular mechanisms underlying tobacco smoke-related defects.", "type": "Expression profiling by array", "pubmed_id": "21803418", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "183", "value_type": "transformed count", "reference_series": "GSE27272", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3929", "description": "non-smoker", "sample_id": [ "GSM674344", "GSM674181", "GSM674282", "GSM674346", "GSM674183", "GSM674284", "GSM674347", "GSM674184", "GSM674348", "GSM674185", "GSM674349", "GSM674186", "GSM674285", "GSM674350", "GSM674187", "GSM674353", "GSM674190", "GSM674287", "GSM674354", "GSM674191", "GSM674288", "GSM674355", "GSM674192", "GSM674289", "GSM674356", "GSM674193", "GSM674290", "GSM674357", "GSM674194", "GSM674291", "GSM674358", "GSM674195", "GSM674292", "GSM674361", "GSM674198", "GSM674295", "GSM674200", "GSM674297", "GSM674363", "GSM674201", "GSM674298", "GSM674364", "GSM674202", "GSM674299", "GSM674365", "GSM674203", "GSM674300", "GSM674366", "GSM674204", "GSM674367", "GSM674205", "GSM674301", "GSM674368", "GSM674206", "GSM674302", "GSM674370", "GSM674208", "GSM674304", "GSM674209", "GSM674305", "GSM674371", "GSM674210", "GSM674306", "GSM674373", "GSM674212", "GSM674308", "GSM674375", "GSM674214", "GSM674309", "GSM674379", "GSM674218", "GSM674313", "GSM674380", "GSM674219", "GSM674314", "GSM674381", "GSM674220", "GSM674315", "GSM674382", "GSM674221", "GSM674316", "GSM674384", "GSM674223", "GSM674318", "GSM674385", "GSM674225", "GSM674226", "GSM674320", "GSM674388", "GSM674229", "GSM674323", "GSM674389", "GSM674230", "GSM674390", "GSM674231", "GSM674391", "GSM674232", "GSM674393", "GSM674234", "GSM674394", "GSM674235", "GSM674324", "GSM674236", "GSM674395", "GSM674237", "GSM674325", "GSM674397", "GSM674239", "GSM674327", "GSM674398", "GSM674240", "GSM674328", "GSM674400", "GSM674242", "GSM674330", "GSM674401", "GSM674402", "GSM674331", "GSM674403", "GSM674243", "GSM674332", "GSM674405", "GSM674244", "GSM674406", "GSM674245", "GSM674334", "GSM674407", "GSM674335" ], "type": "disease state", "id": "GDS3929_1" }, { "dataset_id": "GDS3929", "description": "smoker", "sample_id": [ "GSM674345", "GSM674182", "GSM674283", "GSM674351", "GSM674188", "GSM674352", "GSM674189", "GSM674286", "GSM674359", "GSM674196", "GSM674293", "GSM674360", "GSM674197", "GSM674294", "GSM674362", "GSM674199", "GSM674296", "GSM674369", "GSM674207", "GSM674303", "GSM674372", "GSM674211", "GSM674307", "GSM674374", "GSM674213", "GSM674376", "GSM674215", "GSM674310", "GSM674377", "GSM674216", "GSM674311", "GSM674378", "GSM674217", "GSM674312", "GSM674383", "GSM674222", "GSM674317", "GSM674224", "GSM674319", "GSM674386", "GSM674227", "GSM674321", "GSM674387", "GSM674228", "GSM674322", "GSM674392", "GSM674233", "GSM674396", "GSM674238", "GSM674326", "GSM674399", "GSM674241", "GSM674329", "GSM674404", "GSM674333" ], "type": "disease state", "id": "GDS3929_2" }, { "dataset_id": "GDS3929", "description": "neonatal cord blood", "sample_id": [ "GSM674407", "GSM674406", "GSM674405", "GSM674403", "GSM674402", "GSM674401", "GSM674400", "GSM674398", "GSM674397", "GSM674395", "GSM674394", "GSM674393", "GSM674391", "GSM674390", "GSM674389", "GSM674388", "GSM674385", "GSM674384", "GSM674382", "GSM674381", "GSM674380", "GSM674379", "GSM674375", "GSM674373", "GSM674371", "GSM674370", "GSM674368", "GSM674367", "GSM674366", "GSM674365", "GSM674364", "GSM674363", "GSM674361", "GSM674358", "GSM674357", "GSM674356", "GSM674355", "GSM674354", "GSM674353", "GSM674350", "GSM674349", "GSM674348", "GSM674347", "GSM674346", "GSM674344", "GSM674404", "GSM674399", "GSM674396", "GSM674392", "GSM674387", "GSM674386", "GSM674383", "GSM674378", "GSM674377", "GSM674376", "GSM674374", "GSM674372", "GSM674369", "GSM674362", "GSM674360", "GSM674359", "GSM674352", "GSM674351", "GSM674345" ], "type": "specimen", "id": "GDS3929_3" }, { "dataset_id": "GDS3929", "description": "maternal peripheral blood", "sample_id": [ "GSM674245", "GSM674244", "GSM674243", "GSM674242", "GSM674240", "GSM674239", "GSM674237", "GSM674236", "GSM674235", "GSM674234", "GSM674232", "GSM674231", "GSM674230", "GSM674229", "GSM674226", "GSM674225", "GSM674223", "GSM674221", "GSM674220", "GSM674219", "GSM674218", "GSM674214", "GSM674212", "GSM674210", "GSM674209", "GSM674208", "GSM674206", "GSM674205", "GSM674204", "GSM674203", "GSM674202", "GSM674201", "GSM674200", "GSM674198", "GSM674195", "GSM674194", "GSM674193", "GSM674192", "GSM674191", "GSM674190", "GSM674187", "GSM674186", "GSM674185", "GSM674184", "GSM674183", "GSM674181", "GSM674241", "GSM674238", "GSM674233", "GSM674228", "GSM674227", "GSM674224", "GSM674222", "GSM674217", "GSM674216", "GSM674215", "GSM674213", "GSM674211", "GSM674207", "GSM674199", "GSM674197", "GSM674196", "GSM674189", "GSM674188", "GSM674182" ], "type": "specimen", "id": "GDS3929_4" }, { "dataset_id": "GDS3929", "description": "term placenta", "sample_id": [ "GSM674335", "GSM674334", "GSM674332", "GSM674331", "GSM674330", "GSM674328", "GSM674327", "GSM674325", "GSM674324", "GSM674323", "GSM674320", "GSM674318", "GSM674316", "GSM674315", "GSM674314", "GSM674313", "GSM674309", "GSM674308", "GSM674306", "GSM674305", "GSM674304", "GSM674302", "GSM674301", "GSM674300", "GSM674299", "GSM674298", "GSM674297", "GSM674295", "GSM674292", "GSM674291", "GSM674290", "GSM674289", "GSM674288", "GSM674287", "GSM674285", "GSM674284", "GSM674282", "GSM674333", "GSM674329", "GSM674326", "GSM674322", "GSM674321", "GSM674319", "GSM674317", "GSM674312", "GSM674311", "GSM674310", "GSM674307", "GSM674303", "GSM674296", "GSM674294", "GSM674293", "GSM674286", "GSM674283" ], "type": "specimen", "id": "GDS3929_5" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS3929", "version": 1.0, "instances": "183", "variables": 19338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3929.tab", "compression": "gz" } ], [ [ "GDS3930.tab" ], { "title": "Bone morphogenic protein effect on cultured sympathetic neurons: time course", "description": "Analysis of superior cervical ganglia (SCG) cultured neurons treated with bone morphogenic protein-7 (BMP-7) for 6 or 24h. Addition of BMPs triggers these neurons to extend multiple dendrites. Results provide insight into molecular mechanisms underlying initial formation of primary dendrites.", "type": "Expression profiling by array", "pubmed_id": "21765909", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE28150", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3930", "description": "control", "sample_id": [ "GSM697377", "GSM697378", "GSM697379" ], "type": "agent", "id": "GDS3930_1" }, { "dataset_id": "GDS3930", "description": "BMP-7", "sample_id": [ "GSM697380", "GSM697381", "GSM697382", "GSM697383", "GSM697384", "GSM697385" ], "type": "agent", "id": "GDS3930_2" }, { "dataset_id": "GDS3930", "description": "6 hours", "sample_id": [ "GSM697380", "GSM697381", "GSM697382" ], "type": "time", "id": "GDS3930_3" }, { "dataset_id": "GDS3930", "description": "24 hours", "sample_id": [ "GSM697377", "GSM697378", "GSM697379", "GSM697383", "GSM697384", "GSM697385" ], "type": "time", "id": "GDS3930_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS3930", "version": 1.0, "instances": "9", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3930.tab", "compression": "gz" } ], [ [ "GDS3931.tab" ], { "title": "Adrenergic stress effect on transcription factor GATA4 S105A mutants: heart ventricle", "description": "Analysis of heart from Gata4-S105A knock-in mutants (MAPK phosphorylation site at serine 105 mutated to alanine) treated with phenylephrine. The mutants showed a compromised stress response of the myocardium. Results provide insight into molecular basis of stress-related cardiac hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "21746915", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE30314", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3931", "description": "wild type", "sample_id": [ "GSM751508", "GSM751509", "GSM751510", "GSM751511" ], "type": "genotype/variation", "id": "GDS3931_1" }, { "dataset_id": "GDS3931", "description": "Gata4-S105A mutant", "sample_id": [ "GSM751512", "GSM751513", "GSM751514", "GSM751515" ], "type": "genotype/variation", "id": "GDS3931_2" }, { "dataset_id": "GDS3931", "description": "control", "sample_id": [ "GSM751508", "GSM751509", "GSM751512", "GSM751513" ], "type": "stress", "id": "GDS3931_3" }, { "dataset_id": "GDS3931", "description": "adrenergic phenylephrine", "sample_id": [ "GSM751510", "GSM751511", "GSM751514", "GSM751515" ], "type": "stress", "id": "GDS3931_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3931", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3931.tab", "compression": "gz" } ], [ [ "GDS3932.tab" ], { "title": "Embryonic fibroblast response to forced expression of select transcription factors", "description": "Analysis of motor neurons harvested from Hb9::GFP-transgenic E13.5 embryos, derived from Hb9 GFP ESCs, and made from embryonic fibroblasts by overexpression of 10 transcription factors (TF). Results provide insight into molecular basis of TF-mediated conversion of fibroblasts into motor neurons.", "type": "Expression profiling by array", "pubmed_id": "21852222", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE31160", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3932", "description": "embryonic motor neuron", "sample_id": [ "GSM771424", "GSM771425", "GSM771426", "GSM771427" ], "type": "cell type", "id": "GDS3932_1" }, { "dataset_id": "GDS3932", "description": "ES-derived motor neuron", "sample_id": [ "GSM771428", "GSM771429", "GSM771430", "GSM771431" ], "type": "cell type", "id": "GDS3932_2" }, { "dataset_id": "GDS3932", "description": "induced (reprogrammed) motor neuron", "sample_id": [ "GSM771432", "GSM771433" ], "type": "cell type", "id": "GDS3932_3" }, { "dataset_id": "GDS3932", "description": "GFP-high fluorescence", "sample_id": [ "GSM771428", "GSM771430", "GSM771424", "GSM771426", "GSM771432" ], "type": "protocol", "id": "GDS3932_4" }, { "dataset_id": "GDS3932", "description": "GFP-medium fluorescence", "sample_id": [ "GSM771429", "GSM771431", "GSM771425", "GSM771427", "GSM771433" ], "type": "protocol", "id": "GDS3932_5" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3932", "version": 1.0, "instances": "10", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3932.tab", "compression": "gz" } ], [ [ "GDS3933.tab" ], { "title": "High light stress effect on cell suspension cultures containing functional chloroplasts", "description": "Analysis of Arabidopsis cell suspension culture (ACSC), containing functional chloroplasts, subjected to high light. Several reactive oxygen species (ROS) are generated under HL conditions. Results provide insight into molecular mechanisms underlying early defense responses to HL stress.", "type": "Expression profiling by array", "pubmed_id": "21531897", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE22671", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3933", "description": "control", "sample_id": [ "GSM562208", "GSM562209", "GSM562210" ], "type": "stress", "id": "GDS3933_1" }, { "dataset_id": "GDS3933", "description": "dark", "sample_id": [ "GSM562211", "GSM562212", "GSM562213" ], "type": "stress", "id": "GDS3933_2" }, { "dataset_id": "GDS3933", "description": "high light", "sample_id": [ "GSM562214", "GSM562215", "GSM562216" ], "type": "stress", "id": "GDS3933_3" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3933", "version": 1.0, "instances": "9", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3933.tab", "compression": "gz" } ], [ [ "GDS3934.tab" ], { "title": "Suspension cell cultures response to overexpression of master regulators VND6 and SND1", "description": "Analysis of suspension cell lines in which VASCULAR-RELATED NAC-DOMAIN6 (VND6) or SECONDARY WALL-ASSOCIATES NAC DOMAIN PROTEIN1 (SND1) was overexpressed after the addition of estrogen. Results provide insight in to the roles of master regulators VND6 and SND1 in xylem development.", "type": "Expression profiling by array", "pubmed_id": "20952636", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE20586", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3934", "description": "wild type control", "sample_id": [ "GSM517073", "GSM517074", "GSM517075", "GSM517076", "GSM517077", "GSM517078" ], "type": "cell line", "id": "GDS3934_1" }, { "dataset_id": "GDS3934", "description": "VND6 transformed", "sample_id": [ "GSM517079", "GSM517080", "GSM517081", "GSM517082", "GSM517083", "GSM517084" ], "type": "cell line", "id": "GDS3934_2" }, { "dataset_id": "GDS3934", "description": "SND1 transformed", "sample_id": [ "GSM517085", "GSM517086", "GSM517087", "GSM517088", "GSM517089", "GSM517090" ], "type": "cell line", "id": "GDS3934_3" }, { "dataset_id": "GDS3934", "description": "untreated", "sample_id": [ "GSM517073", "GSM517074", "GSM517075", "GSM517079", "GSM517080", "GSM517081", "GSM517085", "GSM517086", "GSM517087" ], "type": "agent", "id": "GDS3934_4" }, { "dataset_id": "GDS3934", "description": "estrogen", "sample_id": [ "GSM517082", "GSM517083", "GSM517084", "GSM517088", "GSM517089", "GSM517090", "GSM517076", "GSM517077", "GSM517078" ], "type": "agent", "id": "GDS3934_5" }, { "dataset_id": "GDS3934", "description": "0 hrs", "sample_id": [ "GSM517073", "GSM517074", "GSM517075", "GSM517079", "GSM517080", "GSM517081", "GSM517085", "GSM517086", "GSM517087" ], "type": "time", "id": "GDS3934_6" }, { "dataset_id": "GDS3934", "description": "12 hrs", "sample_id": [ "GSM517082", "GSM517083", "GSM517084", "GSM517088", "GSM517089", "GSM517090", "GSM517076", "GSM517077", "GSM517078" ], "type": "time", "id": "GDS3934_7" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS3934", "version": 1.0, "instances": "18", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3934.tab", "compression": "gz" } ], [ [ "GDS3935.tab" ], { "title": "Huntington's disease CAG knock-in effect on striatum and cerebellum", "description": "Analysis of striatum and cerebellum of HdhQ111/Q111 CAG knock-ins (expressing full-length huntingtin with 111-glutamines) and wild-type HdhQ7/Q7 mice (expressing full-length huntingtin with 7-glutamines). Results provide insight into tissue-specific differences in susceptibility to HD CAG mutation.", "type": "Expression profiling by array", "pubmed_id": "21840924", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE9038", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3935", "description": "cerebellum", "sample_id": [ "GSM229450", "GSM229451", "GSM229452", "GSM229456", "GSM229457", "GSM229458", "GSM229453", "GSM229454", "GSM229455", "GSM229459", "GSM229460", "GSM229461" ], "type": "tissue", "id": "GDS3935_1" }, { "dataset_id": "GDS3935", "description": "striatum", "sample_id": [ "GSM229429", "GSM229430", "GSM229431", "GSM229435", "GSM229436", "GSM229437", "GSM229432", "GSM229433", "GSM229434", "GSM229438", "GSM229439", "GSM229440" ], "type": "tissue", "id": "GDS3935_2" }, { "dataset_id": "GDS3935", "description": "wild type Hdh Q7/Q7", "sample_id": [ "GSM229450", "GSM229451", "GSM229452", "GSM229456", "GSM229457", "GSM229458", "GSM229429", "GSM229430", "GSM229431", "GSM229435", "GSM229436", "GSM229437" ], "type": "genotype/variation", "id": "GDS3935_3" }, { "dataset_id": "GDS3935", "description": "Hdh CAG knock-in Q111/Q111", "sample_id": [ "GSM229453", "GSM229454", "GSM229455", "GSM229459", "GSM229460", "GSM229461", "GSM229432", "GSM229433", "GSM229434", "GSM229438", "GSM229439", "GSM229440" ], "type": "genotype/variation", "id": "GDS3935_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3935", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3935.tab", "compression": "gz" } ], [ [ "GDS3936.tab" ], { "title": "Primary erythroblast culture response to cytokine-induced increase in fetal hemoglobin", "description": "Analysis of primary CD34+ hematopoietic progenitor cells, cultured in low-HbF (EPO alone) or high-HbF conditions (EPO, SCF, and TGFbeta-1), on days 7 (proerythroblasts) and 14 (mature erythrocytes). Results provide insight into molecular mechanisms underlying cytokine-induced increases in HbF.", "type": "Expression profiling by array", "pubmed_id": [ "19597182", "17721544" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE7874", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3936", "description": "low HgF conditions (EPO)", "sample_id": [ "GSM190969", "GSM190970", "GSM190971", "GSM190972", "GSM190973", "GSM190964", "GSM190965", "GSM190966", "GSM190967", "GSM190968" ], "type": "growth protocol", "id": "GDS3936_1" }, { "dataset_id": "GDS3936", "description": "high HgF conditions (EST)", "sample_id": [ "GSM426506", "GSM426507", "GSM426508", "GSM426509", "GSM426510" ], "type": "growth protocol", "id": "GDS3936_2" }, { "dataset_id": "GDS3936", "description": "proerythroblast", "sample_id": [ "GSM426506", "GSM426507", "GSM426508", "GSM426509", "GSM426510", "GSM190964", "GSM190965", "GSM190966", "GSM190967", "GSM190968" ], "type": "development stage", "id": "GDS3936_3" }, { "dataset_id": "GDS3936", "description": "mature erythrocytes", "sample_id": [ "GSM190969", "GSM190970", "GSM190971", "GSM190972", "GSM190973" ], "type": "development stage", "id": "GDS3936_4" }, { "dataset_id": "GDS3936", "description": "day 7", "sample_id": [ "GSM190964", "GSM190965", "GSM190966", "GSM190967", "GSM190968", "GSM426506", "GSM426507", "GSM426508", "GSM426509", "GSM426510" ], "type": "time", "id": "GDS3936_5" }, { "dataset_id": "GDS3936", "description": "day 14", "sample_id": [ "GSM190969", "GSM190970", "GSM190971", "GSM190972", "GSM190973" ], "type": "time", "id": "GDS3936_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3936", "version": 1.0, "instances": "15", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3936.tab", "compression": "gz" } ], [ [ "GDS3938.tab" ], { "title": "Induced pluripotent stem cell-derived neurons from schizophrenia patients", "description": "Analysis of induced pluripotent stem cells (iPSCs) generated from schizophrenic patients and differentiated to iPSC-derived neurons in vitro. Schizophrenic iPSC-derived neurons showed diminished neuronal connectivity. Results provide insight into molecular mechanisms responsible for schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "21490598", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE25673", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3938", "description": "control", "sample_id": [ "GSM630785", "GSM630786", "GSM630787", "GSM630788", "GSM630789", "GSM630790", "GSM630791", "GSM630792", "GSM630793", "GSM630794", "GSM630795", "GSM630796" ], "type": "disease state", "id": "GDS3938_1" }, { "dataset_id": "GDS3938", "description": "schizophrenia", "sample_id": [ "GSM630797", "GSM630798", "GSM630799", "GSM630800", "GSM630801", "GSM630802", "GSM630803", "GSM630804", "GSM630805", "GSM630806", "GSM630807", "GSM630808" ], "type": "disease state", "id": "GDS3938_2" }, { "dataset_id": "GDS3938", "description": "male", "sample_id": [ "GSM630785", "GSM630786", "GSM630787", "GSM630797", "GSM630798", "GSM630799", "GSM630803", "GSM630804", "GSM630805", "GSM630806", "GSM630807", "GSM630808" ], "type": "gender", "id": "GDS3938_3" }, { "dataset_id": "GDS3938", "description": "female", "sample_id": [ "GSM630788", "GSM630789", "GSM630790", "GSM630791", "GSM630792", "GSM630793", "GSM630794", "GSM630795", "GSM630796", "GSM630800", "GSM630801", "GSM630802" ], "type": "gender", "id": "GDS3938_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3938", "version": 1.0, "instances": "24", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3938.tab", "compression": "gz" } ], [ [ "GDS3939.tab" ], { "title": "Fisher 344 rat model of aging: parietal cortex", "description": "Analysis of parietal cortices of young and aged F344 males implanted with telemetry devices to measure sleep architecture. Animals were trained in the Morris water maze to assess cognitive function. Results provide insight into possible mechanistic links between sleep changes and cognitive aging.", "type": "Expression profiling by array", "pubmed_id": "21483696", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE24515", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3939", "description": "young (3 to 5 months old)", "sample_id": [ "GSM604547", "GSM604548", "GSM604549", "GSM604550", "GSM604551", "GSM604552" ], "type": "age", "id": "GDS3939_1" }, { "dataset_id": "GDS3939", "description": "aged (21 to 23 months old)", "sample_id": [ "GSM604553", "GSM604554", "GSM604555", "GSM604556", "GSM604557", "GSM604558" ], "type": "age", "id": "GDS3939_2" }, { "dataset_id": "GDS3939", "description": "subject 1", "sample_id": [ "GSM604547", "GSM604553" ], "type": "specimen", "id": "GDS3939_3" }, { "dataset_id": "GDS3939", "description": "subject 2", "sample_id": [ "GSM604548", "GSM604554" ], "type": "specimen", "id": "GDS3939_4" }, { "dataset_id": "GDS3939", "description": "subject 3", "sample_id": [ "GSM604549", "GSM604555" ], "type": "specimen", "id": "GDS3939_5" }, { "dataset_id": "GDS3939", "description": "subject 4", "sample_id": [ "GSM604550", "GSM604556" ], "type": "specimen", "id": "GDS3939_6" }, { "dataset_id": "GDS3939", "description": "subject 5", "sample_id": [ "GSM604551", "GSM604557" ], "type": "specimen", "id": "GDS3939_7" }, { "dataset_id": "GDS3939", "description": "subject 6", "sample_id": [ "GSM604552", "GSM604558" ], "type": "specimen", "id": "GDS3939_8" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS3939", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3939.tab", "compression": "gz" } ], [ [ "GDS394.tab" ], { "title": "Muscle eccentric and isometric contraction", "description": "Tibialis anterior muscle eccentric contraction (EC) and isometric contraction (IC) comparison. Mice subjected to 50 EC or 50 IC using non-invasive model, and sacrificed 48 hours later.", "type": "Expression profiling by array", "pubmed_id": "14561590", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE435", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS394", "description": "control", "sample_id": [ "GSM6689", "GSM6690" ], "type": "protocol", "id": "GDS394_1" }, { "dataset_id": "GDS394", "description": "eccentric contraction", "sample_id": [ "GSM6691", "GSM6692" ], "type": "protocol", "id": "GDS394_2" }, { "dataset_id": "GDS394", "description": "isometric contraction", "sample_id": [ "GSM6693", "GSM6694" ], "type": "protocol", "id": "GDS394_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS394", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS394.tab", "compression": "gz" } ], [ [ "GDS3940.tab" ], { "title": "Sj\u00f6gren's syndrome: minor salivary glands", "description": "Analysis of minor salivary glands with varying degrees of inflammation from Sj\u00f6gren's syndrome (SS) patients. SS is a chronic autoimmune disease targeting salivary and lacrimal exocrine glands. Results provide insight into the molecular mechanisms underlying the immunopathology associated with SS.", "type": "Expression profiling by array", "pubmed_id": "21618203", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE23117", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3940", "description": "non-Sjogren's Syndrome (control)", "sample_id": [ "GSM569476", "GSM569475", "GSM569474", "GSM569473" ], "type": "disease state", "id": "GDS3940_1" }, { "dataset_id": "GDS3940", "description": "early Sjogren's Syndrome", "sample_id": [ "GSM569482", "GSM569481", "GSM569480", "GSM569479", "GSM569478" ], "type": "disease state", "id": "GDS3940_2" }, { "dataset_id": "GDS3940", "description": "moderate Sjogren's Syndrome", "sample_id": [ "GSM569485", "GSM569484", "GSM569483" ], "type": "disease state", "id": "GDS3940_3" }, { "dataset_id": "GDS3940", "description": "advanced Sjogren's Syndrome", "sample_id": [ "GSM569472", "GSM569471" ], "type": "disease state", "id": "GDS3940_4" }, { "dataset_id": "GDS3940", "description": "Sjogren's syndrome (control)", "sample_id": [ "GSM569477" ], "type": "disease state", "id": "GDS3940_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3940", "version": 1.0, "instances": "15", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3940.tab", "compression": "gz" } ], [ [ "GDS3941.tab" ], { "title": "Post-menopausal women: vaginal epithelium", "description": "Analysis of vaginal epithelium of postmenopausal women with vaginal dryness. Vaginal dryness and atrophy are associated with menopausal estrogen depletion. Results provide insight into molecular mechanisms underlying vaginal atrophy.", "type": "Expression profiling by array", "pubmed_id": "22073175", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE26761", "order": "none", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3941", "description": "vaginal dryness", "sample_id": [ "GSM658722", "GSM658723", "GSM658727", "GSM658728" ], "type": "disease state", "id": "GDS3941_1" }, { "dataset_id": "GDS3941", "description": "control", "sample_id": [ "GSM658724", "GSM658725", "GSM658726", "GSM658729", "GSM658730", "GSM658731" ], "type": "disease state", "id": "GDS3941_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3941", "version": 1.0, "instances": "10", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3941.tab", "compression": "gz" } ], [ [ "GDS3942.tab" ], { "title": "Aging effect on bone marrow hematopoietic stem cells", "description": "Analysis of bone marrow-derived, hematopoietic stem cells (HSC) from healthy, hematologically normal young and elderly donors. Aged HSCs are increased in frequency and are less quiescent than young HSCs. Results provide insight into molecular mechanisms underlying the hematopoietic aging phenotype.", "type": "Expression profiling by array", "pubmed_id": "22123971", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE32719", "order": "ordered", "update_date": "Dec 20 2011", "subsets": [ { "dataset_id": "GDS3942", "description": "young (19-31 years)", "sample_id": [ "GSM812988", "GSM812989", "GSM812990", "GSM812991", "GSM812992", "GSM812993", "GSM812994", "GSM812995", "GSM812996", "GSM812997", "GSM812998", "GSM812999", "GSM813000", "GSM813001" ], "type": "age", "id": "GDS3942_1" }, { "dataset_id": "GDS3942", "description": "middle (42-61 years)", "sample_id": [ "GSM813002", "GSM813003", "GSM813004", "GSM813005", "GSM813006" ], "type": "age", "id": "GDS3942_2" }, { "dataset_id": "GDS3942", "description": "old (65-84 years)", "sample_id": [ "GSM813007", "GSM813008", "GSM813009", "GSM813010", "GSM813011", "GSM813012", "GSM813013", "GSM813014" ], "type": "age", "id": "GDS3942_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3942", "version": 1.0, "instances": "27", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3942.tab", "compression": "gz" } ], [ [ "GDS3943.tab" ], { "title": "Effect of aging on nematode", "description": "Analysis of C.elegans at 3 points during aging: late larval L4 stage, days 6 and 15 of adulthood. C. elegans exhibits increased susceptibility to bacterial infection with age. Results provide insight into molecular mechanisms underlying the decline in immune function with aging (immunosenescence).", "type": "Expression profiling by array", "pubmed_id": "21625567", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE21784", "order": "none", "update_date": "Dec 21 2011", "subsets": [ { "dataset_id": "GDS3943", "description": "L4 stage", "sample_id": [ "GSM542652", "GSM542653", "GSM542654" ], "type": "age", "id": "GDS3943_1" }, { "dataset_id": "GDS3943", "description": "day 6", "sample_id": [ "GSM542655", "GSM542656", "GSM542657" ], "type": "age", "id": "GDS3943_2" }, { "dataset_id": "GDS3943", "description": "day 15", "sample_id": [ "GSM542658", "GSM542659", "GSM542660" ], "type": "age", "id": "GDS3943_3" }, { "dataset_id": "GDS3943", "description": "larval", "sample_id": [ "GSM542652", "GSM542653", "GSM542654" ], "type": "development stage", "id": "GDS3943_4" }, { "dataset_id": "GDS3943", "description": "adult", "sample_id": [ "GSM542655", "GSM542656", "GSM542657", "GSM542658", "GSM542659", "GSM542660" ], "type": "development stage", "id": "GDS3943_5" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS3943", "version": 1.0, "instances": "9", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3943.tab", "compression": "gz" } ], [ [ "GDS3944.tab" ], { "title": "Rho kinase inhibitor fasudil effect on forebrain astrocyte culture: time course", "description": "Analysis of astrocytes treated with Rho kinase (ROCK) inhibitor fasudil for up to 24 hrs. ROCK inhibitors inhibit glial scarring, a reactive process involving astrogliosis that occurs after injury to CNS. Results provide mechanistic insights into beneficial action of fasudil during brain injury.", "type": "Expression profiling by array", "pubmed_id": "21604263", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE25829", "order": "none", "update_date": "Dec 21 2011", "subsets": [ { "dataset_id": "GDS3944", "description": "no treatment, control", "sample_id": [ "GSM634509", "GSM634519", "GSM634513", "GSM634521", "GSM634529", "GSM634517", "GSM634515", "GSM634523", "GSM634531", "GSM634539", "GSM634527", "GSM634525", "GSM634535", "GSM634537", "GSM634533", "GSM634511" ], "type": "agent", "id": "GDS3944_1" }, { "dataset_id": "GDS3944", "description": "Rho kinase inhibitor fasudil", "sample_id": [ "GSM634512", "GSM634520", "GSM634528", "GSM634536", "GSM634514", "GSM634522", "GSM634530", "GSM634516", "GSM634524", "GSM634532", "GSM634540", "GSM634538", "GSM634510", "GSM634518", "GSM634526", "GSM634534" ], "type": "agent", "id": "GDS3944_2" }, { "dataset_id": "GDS3944", "description": "2 hours", "sample_id": [ "GSM634509", "GSM634510", "GSM634517", "GSM634518", "GSM634525", "GSM634526", "GSM634533", "GSM634534" ], "type": "time", "id": "GDS3944_3" }, { "dataset_id": "GDS3944", "description": "6 hours", "sample_id": [ "GSM634511", "GSM634512", "GSM634519", "GSM634520", "GSM634527", "GSM634528", "GSM634535", "GSM634536" ], "type": "time", "id": "GDS3944_4" }, { "dataset_id": "GDS3944", "description": "12 hours", "sample_id": [ "GSM634513", "GSM634514", "GSM634521", "GSM634522", "GSM634529", "GSM634530", "GSM634537", "GSM634538" ], "type": "time", "id": "GDS3944_5" }, { "dataset_id": "GDS3944", "description": "24 hour", "sample_id": [ "GSM634515", "GSM634516", "GSM634523", "GSM634524", "GSM634531", "GSM634532", "GSM634539", "GSM634540" ], "type": "time", "id": "GDS3944_6" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS3944", "version": 1.0, "instances": "32", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3944.tab", "compression": "gz" } ], [ [ "GDS3945.tab" ], { "title": "Renal clear cell carcinoma-thyroid hormone receptor mutants: HepG3 cell line", "description": "Analysis of HepG2 transformants expressing: wildtype thyroid hormone receptors (TRs), hepatocellular carcinoma (HCC)-TR mutants, or renal clear cell carcinoma (RCCC)-TR mutants, in the presence of hormone agonist T3 thyronine. Results provide insight into a unique regulatory repertoire for RCCCs.", "type": "Expression profiling by array", "pubmed_id": "21622534", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE29159", "order": "none", "update_date": "Dec 21 2011", "subsets": [ { "dataset_id": "GDS3945", "description": "THRA wild type", "sample_id": [ "GSM721654", "GSM721655", "GSM721656", "GSM721657", "GSM721658", "GSM721659" ], "type": "genotype/variation", "id": "GDS3945_1" }, { "dataset_id": "GDS3945", "description": "THRB wild type", "sample_id": [ "GSM721660", "GSM721661", "GSM721662", "GSM721663", "GSM721664", "GSM721665" ], "type": "genotype/variation", "id": "GDS3945_2" }, { "dataset_id": "GDS3945", "description": "THRA-HCC mutant al", "sample_id": [ "GSM721666", "GSM721667", "GSM721668", "GSM721669", "GSM721670", "GSM721671" ], "type": "genotype/variation", "id": "GDS3945_3" }, { "dataset_id": "GDS3945", "description": "THRA-RCCC mutant 6a", "sample_id": [ "GSM721672", "GSM721673", "GSM721674", "GSM721675", "GSM721676", "GSM721677" ], "type": "genotype/variation", "id": "GDS3945_4" }, { "dataset_id": "GDS3945", "description": "THRB-HCC mutant bN", "sample_id": [ "GSM721678", "GSM721679", "GSM721680", "GSM721681", "GSM721682", "GSM721683" ], "type": "genotype/variation", "id": "GDS3945_5" }, { "dataset_id": "GDS3945", "description": "THRB-RCCC mutant 15b", "sample_id": [ "GSM721684", "GSM721685", "GSM721686", "GSM721687", "GSM721688", "GSM721689" ], "type": "genotype/variation", "id": "GDS3945_6" }, { "dataset_id": "GDS3945", "description": "control (empty vector)", "sample_id": [ "GSM721690", "GSM721691", "GSM721692", "GSM721693", "GSM721694", "GSM721695" ], "type": "genotype/variation", "id": "GDS3945_7" }, { "dataset_id": "GDS3945", "description": "control", "sample_id": [ "GSM721654", "GSM721655", "GSM721656", "GSM721660", "GSM721661", "GSM721662", "GSM721666", "GSM721667", "GSM721668", "GSM721672", "GSM721673", "GSM721674", "GSM721678", "GSM721679", "GSM721680", "GSM721684", "GSM721685", "GSM721686", "GSM721690", "GSM721691", "GSM721692" ], "type": "agent", "id": "GDS3945_8" }, { "dataset_id": "GDS3945", "description": "T3 thyronine", "sample_id": [ "GSM721657", "GSM721658", "GSM721659", "GSM721663", "GSM721664", "GSM721665", "GSM721669", "GSM721670", "GSM721671", "GSM721675", "GSM721676", "GSM721677", "GSM721681", "GSM721682", "GSM721683", "GSM721687", "GSM721688", "GSM721689", "GSM721693", "GSM721694", "GSM721695" ], "type": "agent", "id": "GDS3945_9" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3945", "version": 1.0, "instances": "42", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3945.tab", "compression": "gz" } ], [ [ "GDS3946.tab" ], { "title": "Dexamethasone effect on cultured airway smooth muscle cells: time course", "description": "Analysis of airway smooth muscle (ASM) cells treated with glucocorticoid (GC) dexamethasone for 4 or 24h. GCs are used to treat asthma, exerting their therapeutic effects in part through modulating ASM structure/function. Results provide insight into molecular mechanisms underlying GC action in ASM.", "type": "Expression profiling by array", "pubmed_id": "21257922", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE34313", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3946", "description": "untreated", "sample_id": [ "GSM847200", "GSM847201", "GSM847202", "GSM847203" ], "type": "agent", "id": "GDS3946_1" }, { "dataset_id": "GDS3946", "description": "dexamethasone", "sample_id": [ "GSM847204", "GSM847205", "GSM847206", "GSM847207", "GSM847208", "GSM847209" ], "type": "agent", "id": "GDS3946_2" }, { "dataset_id": "GDS3946", "description": "control", "sample_id": [ "GSM847200", "GSM847201", "GSM847202", "GSM847203" ], "type": "time", "id": "GDS3946_3" }, { "dataset_id": "GDS3946", "description": "4 hours", "sample_id": [ "GSM847204", "GSM847205", "GSM847206" ], "type": "time", "id": "GDS3946_4" }, { "dataset_id": "GDS3946", "description": "24 hours", "sample_id": [ "GSM847207", "GSM847208", "GSM847209" ], "type": "time", "id": "GDS3946_5" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS3946", "version": 1.0, "instances": "10", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3946.tab", "compression": "gz" } ], [ [ "GDS3948.tab" ], { "title": "Trophoblast stem cell differentiation in vitro", "description": "Analysis of trophoblast stem (TS) cell lines TS3.5 and TS6.5 derived from 2 time points during embryogenesis (from blastocyst and E6.5 embryos, respectively) and differentiated over 6 days. Results provide insight into the molecular basis of trophoblast development.", "type": "Expression profiling by array", "pubmed_id": "20081188", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE12999", "order": "none", "update_date": "Dec 21 2011", "subsets": [ { "dataset_id": "GDS3948", "description": "TS3.5", "sample_id": [ "GSM325436", "GSM325437", "GSM325438", "GSM325439", "GSM325440", "GSM325441", "GSM325442" ], "type": "cell line", "id": "GDS3948_1" }, { "dataset_id": "GDS3948", "description": "TS6.5", "sample_id": [ "GSM325443", "GSM325444", "GSM325445", "GSM325446", "GSM325447", "GSM325448", "GSM325449" ], "type": "cell line", "id": "GDS3948_2" }, { "dataset_id": "GDS3948", "description": "day 0", "sample_id": [ "GSM325436", "GSM325443" ], "type": "time", "id": "GDS3948_3" }, { "dataset_id": "GDS3948", "description": "day 1", "sample_id": [ "GSM325437", "GSM325444" ], "type": "time", "id": "GDS3948_4" }, { "dataset_id": "GDS3948", "description": "day 2", "sample_id": [ "GSM325438", "GSM325445" ], "type": "time", "id": "GDS3948_5" }, { "dataset_id": "GDS3948", "description": "day 3", "sample_id": [ "GSM325439", "GSM325446" ], "type": "time", "id": "GDS3948_6" }, { "dataset_id": "GDS3948", "description": "day 4", "sample_id": [ "GSM325440", "GSM325447" ], "type": "time", "id": "GDS3948_7" }, { "dataset_id": "GDS3948", "description": "day 5", "sample_id": [ "GSM325441", "GSM325448" ], "type": "time", "id": "GDS3948_8" }, { "dataset_id": "GDS3948", "description": "day 6", "sample_id": [ "GSM325442", "GSM325449" ], "type": "time", "id": "GDS3948_9" }, { "dataset_id": "GDS3948", "description": "control", "sample_id": [ "GSM325436", "GSM325443" ], "type": "protocol", "id": "GDS3948_10" }, { "dataset_id": "GDS3948", "description": "differentiation", "sample_id": [ "GSM325442", "GSM325449", "GSM325441", "GSM325448", "GSM325440", "GSM325447", "GSM325439", "GSM325446", "GSM325438", "GSM325445", "GSM325437", "GSM325444" ], "type": "protocol", "id": "GDS3948_11" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3948", "version": 1.0, "instances": "14", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3948.tab", "compression": "gz" } ], [ [ "GDS3949.tab" ], { "title": "Cdx2 and Gata3 overexpression effect on R1 embryonic stem cell line", "description": "Analysis of R1 embryonic stem (ES) cells overexpressing transcription factor Cdx2 or Gata3 and cultured under trophoblast stem (TS) cell derivation conditions. Gata3-expressing Cdx2-null ES cells also examined. Results provide insight into the roles of Gata3 and Cdx2 in trophoblast development.", "type": "Expression profiling by array", "pubmed_id": "20081188", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE12999", "order": "none", "update_date": "Jun 19 2012", "subsets": [ { "dataset_id": "GDS3949", "description": "control", "sample_id": [ "GSM325459", "GSM325450", "GSM325453", "GSM325452", "GSM325451", "GSM325455", "GSM325454" ], "type": "genotype/variation", "id": "GDS3949_1" }, { "dataset_id": "GDS3949", "description": "Cdx2-null", "sample_id": [ "GSM325458", "GSM325457", "GSM325456" ], "type": "genotype/variation", "id": "GDS3949_2" }, { "dataset_id": "GDS3949", "description": "Gata3 overexpression", "sample_id": [ "GSM325458", "GSM325457", "GSM325456", "GSM325450", "GSM325453", "GSM325452", "GSM325451" ], "type": "protocol", "id": "GDS3949_3" }, { "dataset_id": "GDS3949", "description": "Cdx2 overexpression", "sample_id": [ "GSM325455", "GSM325454" ], "type": "protocol", "id": "GDS3949_4" }, { "dataset_id": "GDS3949", "description": "differentiated control", "sample_id": [ "GSM325459" ], "type": "protocol", "id": "GDS3949_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3949", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3949.tab", "compression": "gz" } ], [ [ "GDS395.tab" ], { "title": "Biomaterial engineering", "description": "Temporal gene expression analysis of fetal lung fibroblast cell line IMR-90 seeded onto collagen/chondroitin sulfate tissue engineering scaffold mesh material. Integration of genomic information with biomaterial engineering.", "type": "Expression profiling by array", "pubmed_id": "15159079", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE6432", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS395", "description": "collagen/chondroitin tissue engineering scaffold mesh", "sample_id": [ "GSM6037", "GSM6038", "GSM6039", "GSM6043", "GSM6044", "GSM6045", "GSM6047", "GSM6048", "GSM6050", "GSM6051", "GSM6054", "GSM6055", "GSM6057", "GSM6058", "GSM6059", "GSM6064", "GSM6065", "GSM6066", "GSM6067" ], "type": "protocol", "id": "GDS395_1" }, { "dataset_id": "GDS395", "description": "tissue culture polystyrene dish", "sample_id": [ "GSM6040", "GSM6041", "GSM6042", "GSM6046", "GSM6049", "GSM6052", "GSM6053", "GSM6056", "GSM6060", "GSM6061", "GSM6062", "GSM6068", "GSM6069" ], "type": "protocol", "id": "GDS395_2" }, { "dataset_id": "GDS395", "description": "1 hour", "sample_id": [ "GSM6043", "GSM6044", "GSM6045", "GSM6046" ], "type": "time", "id": "GDS395_3" }, { "dataset_id": "GDS395", "description": "2 hour", "sample_id": [ "GSM6050", "GSM6051", "GSM6052", "GSM6053" ], "type": "time", "id": "GDS395_4" }, { "dataset_id": "GDS395", "description": "4 hour", "sample_id": [ "GSM6057", "GSM6058", "GSM6059", "GSM6060", "GSM6061", "GSM6062" ], "type": "time", "id": "GDS395_5" }, { "dataset_id": "GDS395", "description": "8 hour", "sample_id": [ "GSM6064", "GSM6065", "GSM6066", "GSM6067", "GSM6068", "GSM6069" ], "type": "time", "id": "GDS395_6" }, { "dataset_id": "GDS395", "description": "12 hour", "sample_id": [ "GSM6037", "GSM6038", "GSM6039", "GSM6040", "GSM6041", "GSM6042" ], "type": "time", "id": "GDS395_7" }, { "dataset_id": "GDS395", "description": "24 hour", "sample_id": [ "GSM6047", "GSM6048", "GSM6049" ], "type": "time", "id": "GDS395_8" }, { "dataset_id": "GDS395", "description": "48 hour", "sample_id": [ "GSM6054", "GSM6055", "GSM6056" ], "type": "time", "id": "GDS395_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS395", "version": 1.0, "instances": "32", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS395.tab", "compression": "gz" } ], [ [ "GDS3950.tab" ], { "title": "Lung development", "description": "Analysis of lung from ICR females over a time course beginning at embryonic day 12 and continuing into adulthood, encompassing all recognized stages of lung development. These results, together with miRNA profiling results, provide insight into molecular mechanisms underlying lung organogenesis.", "type": "Expression profiling by array", "pubmed_id": "20520778", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE21053", "order": "ordered", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3950", "description": "embryonic day 12", "sample_id": [ "GSM523960", "GSM523961" ], "type": "age", "id": "GDS3950_1" }, { "dataset_id": "GDS3950", "description": "embryonic day 14", "sample_id": [ "GSM523962", "GSM523963" ], "type": "age", "id": "GDS3950_2" }, { "dataset_id": "GDS3950", "description": "embryonic day 16", "sample_id": [ "GSM523964", "GSM523965" ], "type": "age", "id": "GDS3950_3" }, { "dataset_id": "GDS3950", "description": "embryonic day 18", "sample_id": [ "GSM523966", "GSM523967" ], "type": "age", "id": "GDS3950_4" }, { "dataset_id": "GDS3950", "description": "postnatal day 2", "sample_id": [ "GSM523968", "GSM523969" ], "type": "age", "id": "GDS3950_5" }, { "dataset_id": "GDS3950", "description": "postnatal day 10", "sample_id": [ "GSM523970", "GSM523971" ], "type": "age", "id": "GDS3950_6" }, { "dataset_id": "GDS3950", "description": "postnatal day 30", "sample_id": [ "GSM523972", "GSM523973" ], "type": "age", "id": "GDS3950_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3950", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3950.tab", "compression": "gz" } ], [ [ "GDS3951.tab" ], { "title": "Interstitial lung disease", "description": "Analysis of lung tissue from patients with different types of interstitial lung disease (ILD). The ILDs represent a broad category of restrictive lung disorders. These results, together with miRNA profiling results, provide insight into molecular mechanisms underlying ILDs.", "type": "Expression profiling by array", "pubmed_id": "21241464", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE21411", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3951", "description": "control (from lung cancer patient)", "sample_id": [ "GSM533882", "GSM533883", "GSM533884", "GSM533885", "GSM533886" ], "type": "disease state", "id": "GDS3951_1" }, { "dataset_id": "GDS3951", "description": "control (from lung transplant patient)", "sample_id": [ "GSM533887" ], "type": "disease state", "id": "GDS3951_2" }, { "dataset_id": "GDS3951", "description": "interstitial lung disease", "sample_id": [ "GSM533888", "GSM533889", "GSM533890", "GSM533891", "GSM533892", "GSM533893", "GSM533894", "GSM533895", "GSM533896", "GSM533897", "GSM533898", "GSM533899", "GSM533900", "GSM533901", "GSM533902", "GSM533903", "GSM533904", "GSM533905", "GSM533906", "GSM533907", "GSM533908", "GSM533909", "GSM533910" ], "type": "disease state", "id": "GDS3951_3" }, { "dataset_id": "GDS3951", "description": "control", "sample_id": [ "GSM533882", "GSM533883", "GSM533884", "GSM533885", "GSM533886", "GSM533887" ], "type": "other", "id": "GDS3951_4" }, { "dataset_id": "GDS3951", "description": "UIP/IPF", "sample_id": [ "GSM533888", "GSM533889", "GSM533891", "GSM533892", "GSM533893", "GSM533896", "GSM533897", "GSM533899", "GSM533905", "GSM533909", "GSM533910" ], "type": "other", "id": "GDS3951_5" }, { "dataset_id": "GDS3951", "description": "COP", "sample_id": [ "GSM533904", "GSM533906" ], "type": "other", "id": "GDS3951_6" }, { "dataset_id": "GDS3951", "description": "FU", "sample_id": [ "GSM533890" ], "type": "other", "id": "GDS3951_7" }, { "dataset_id": "GDS3951", "description": "HP", "sample_id": [ "GSM533898", "GSM533908" ], "type": "other", "id": "GDS3951_8" }, { "dataset_id": "GDS3951", "description": "NSIP", "sample_id": [ "GSM533894", "GSM533895", "GSM533900", "GSM533901", "GSM533907" ], "type": "other", "id": "GDS3951_9" }, { "dataset_id": "GDS3951", "description": "RB-ILD", "sample_id": [ "GSM533902", "GSM533903" ], "type": "other", "id": "GDS3951_10" }, { "dataset_id": "GDS3951", "description": "n/a", "sample_id": [ "GSM533882", "GSM533883", "GSM533884", "GSM533885", "GSM533886", "GSM533887" ], "type": "specimen", "id": "GDS3951_11" }, { "dataset_id": "GDS3951", "description": "FVC1", "sample_id": [ "GSM533888", "GSM533889", "GSM533890", "GSM533891", "GSM533892" ], "type": "specimen", "id": "GDS3951_12" }, { "dataset_id": "GDS3951", "description": "FVC2", "sample_id": [ "GSM533893", "GSM533894", "GSM533895", "GSM533896", "GSM533897", "GSM533898", "GSM533899", "GSM533900" ], "type": "specimen", "id": "GDS3951_13" }, { "dataset_id": "GDS3951", "description": "FVC3", "sample_id": [ "GSM533901", "GSM533902", "GSM533903", "GSM533904", "GSM533905", "GSM533906", "GSM533907", "GSM533908", "GSM533909", "GSM533910" ], "type": "specimen", "id": "GDS3951_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3951", "version": 1.0, "instances": "29", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3951.tab", "compression": "gz" } ], [ [ "GDS3952.tab" ], { "title": "Breast cancer patients: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from breast cancer patients, patients with benign breast abnormalities, healthy individuals, and patients with other types of cancer (GI, brain). These results, together with results from a murine breast cancer model, provide insight into developing a human breast tumor predictor.", "type": "Expression profiling by array", "pubmed_id": "21781289", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "162", "value_type": "transformed count", "reference_series": "GSE27567", "order": "none", "update_date": "Dec 22 2011", "subsets": [ { "dataset_id": "GDS3952", "description": "benign breast abnormalities", "sample_id": [ "GSM682002", "GSM682011", "GSM682003", "GSM682004", "GSM682005", "GSM682006", "GSM682007", "GSM682008", "GSM682009", "GSM682010", "GSM682096", "GSM682105", "GSM682106", "GSM682107", "GSM682108", "GSM682109", "GSM682110", "GSM682111", "GSM682112", "GSM682113", "GSM682114", "GSM682097", "GSM682115", "GSM682116", "GSM682117", "GSM682118", "GSM682119", "GSM682120", "GSM682121", "GSM682122", "GSM682098", "GSM682099", "GSM682100", "GSM682101", "GSM682102", "GSM682103", "GSM682104" ], "type": "disease state", "id": "GDS3952_1" }, { "dataset_id": "GDS3952", "description": "ectopic (gastrointestinal and brain) cancers", "sample_id": [ "GSM682012", "GSM682021", "GSM682022", "GSM682023", "GSM682024", "GSM682025", "GSM682026", "GSM682027", "GSM682028", "GSM682029", "GSM682030", "GSM682013", "GSM682031", "GSM682032", "GSM682033", "GSM682014", "GSM682015", "GSM682016", "GSM682017", "GSM682018", "GSM682019", "GSM682020" ], "type": "disease state", "id": "GDS3952_2" }, { "dataset_id": "GDS3952", "description": "malignant breast cancer", "sample_id": [ "GSM681992", "GSM682001", "GSM681993", "GSM681994", "GSM681995", "GSM681996", "GSM681997", "GSM681998", "GSM681999", "GSM682000", "GSM682055", "GSM682064", "GSM682065", "GSM682066", "GSM682067", "GSM682068", "GSM682069", "GSM682070", "GSM682071", "GSM682072", "GSM682073", "GSM682056", "GSM682074", "GSM682075", "GSM682076", "GSM682077", "GSM682078", "GSM682079", "GSM682080", "GSM682081", "GSM682082", "GSM682083", "GSM682057", "GSM682084", "GSM682085", "GSM682086", "GSM682087", "GSM682088", "GSM682089", "GSM682090", "GSM682091", "GSM682092", "GSM682093", "GSM682058", "GSM682094", "GSM682095", "GSM682059", "GSM682060", "GSM682061", "GSM682062", "GSM682063" ], "type": "disease state", "id": "GDS3952_3" }, { "dataset_id": "GDS3952", "description": "healthy", "sample_id": [ "GSM681982", "GSM681991", "GSM681983", "GSM681984", "GSM681985", "GSM681986", "GSM681987", "GSM681988", "GSM681989", "GSM681990", "GSM682034", "GSM682043", "GSM682044", "GSM682045", "GSM682046", "GSM682047", "GSM682048", "GSM682049", "GSM682050", "GSM682051", "GSM682052", "GSM682035", "GSM682053", "GSM682054", "GSM682036", "GSM682037", "GSM682038", "GSM682039", "GSM682040", "GSM682041", "GSM682042" ], "type": "disease state", "id": "GDS3952_4" }, { "dataset_id": "GDS3952", "description": "Pre-Surgery (malignant)", "sample_id": [ "GSM682123", "GSM682124", "GSM682125", "GSM682126", "GSM682127", "GSM682128" ], "type": "disease state", "id": "GDS3952_5" }, { "dataset_id": "GDS3952", "description": "Post-Surgery (malignant)", "sample_id": [ "GSM682129", "GSM682138", "GSM682139", "GSM682140", "GSM682141", "GSM682142", "GSM682143", "GSM682130", "GSM682131", "GSM682132", "GSM682133", "GSM682134", "GSM682135", "GSM682136", "GSM682137" ], "type": "disease state", "id": "GDS3952_6" }, { "dataset_id": "GDS3952", "description": "training set", "sample_id": [ "GSM681982", "GSM681983", "GSM681984", "GSM681985", "GSM681986", "GSM681987", "GSM681988", "GSM681989", "GSM681990", "GSM681991", "GSM681992", "GSM681993", "GSM681994", "GSM681995", "GSM681996", "GSM681997", "GSM681998", "GSM681999", "GSM682000", "GSM682001", "GSM682002", "GSM682003", "GSM682004", "GSM682005", "GSM682006", "GSM682007", "GSM682008", "GSM682009", "GSM682010", "GSM682011" ], "type": "protocol", "id": "GDS3952_7" }, { "dataset_id": "GDS3952", "description": "validation set", "sample_id": [ "GSM682012", "GSM682013", "GSM682014", "GSM682015", "GSM682016", "GSM682017", "GSM682018", "GSM682019", "GSM682020", "GSM682021", "GSM682022", "GSM682023", "GSM682024", "GSM682025", "GSM682026", "GSM682027", "GSM682028", "GSM682029", "GSM682030", "GSM682031", "GSM682032", "GSM682033", "GSM682034", "GSM682035", "GSM682036", "GSM682037", "GSM682038", "GSM682039", "GSM682040", "GSM682041", "GSM682042", "GSM682043", "GSM682044", "GSM682045", "GSM682046", "GSM682047", "GSM682048", "GSM682049", "GSM682050", "GSM682051", "GSM682052", "GSM682053", "GSM682054", "GSM682055", "GSM682056", "GSM682057", "GSM682058", "GSM682059", "GSM682060", "GSM682061", "GSM682062", "GSM682063", "GSM682064", "GSM682065", "GSM682066", "GSM682067", "GSM682068", "GSM682069", "GSM682070", "GSM682071", "GSM682072", "GSM682073", "GSM682074", "GSM682075", "GSM682076", "GSM682077", "GSM682078", "GSM682079", "GSM682080", "GSM682081", "GSM682082", "GSM682083", "GSM682084", "GSM682085", "GSM682086", "GSM682087", "GSM682088", "GSM682089", "GSM682090", "GSM682091", "GSM682092", "GSM682093", "GSM682094", "GSM682095", "GSM682096", "GSM682097", "GSM682098", "GSM682099", "GSM682100", "GSM682101", "GSM682102", "GSM682103", "GSM682104", "GSM682105", "GSM682106", "GSM682107", "GSM682108", "GSM682109", "GSM682110", "GSM682111", "GSM682112", "GSM682113", "GSM682114", "GSM682115", "GSM682116", "GSM682117", "GSM682118", "GSM682119", "GSM682120", "GSM682121", "GSM682122", "GSM682123", "GSM682124", "GSM682125", "GSM682126", "GSM682127", "GSM682128", "GSM682129", "GSM682130", "GSM682131", "GSM682132", "GSM682133", "GSM682134", "GSM682135", "GSM682136", "GSM682137", "GSM682138", "GSM682139", "GSM682140", "GSM682141", "GSM682142", "GSM682143" ], "type": "protocol", "id": "GDS3952_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3952", "version": 1.0, "instances": "162", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3952.tab", "compression": "gz" } ], [ [ "GDS3953.tab" ], { "title": "MMTV/c-MYC transgenic model of breast cancer: peripheral blood cells", "description": "Analysis of PBCs from FVB/NJ female, MMTV/c-MYC transgenics with advanced mammary tumors versus tumor-free controls matched for age and parity. These results, together with results from breast cancer patients, provide a foundation for developing a human breast tumor predictor.", "type": "Expression profiling by array", "pubmed_id": "21781289", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "93", "value_type": "transformed count", "reference_series": "GSE27567", "order": "none", "update_date": "Dec 22 2011", "subsets": [ { "dataset_id": "GDS3953", "description": "tumor-free control", "sample_id": [ "GSM682200", "GSM682199", "GSM682198", "GSM682197", "GSM682196", "GSM682195", "GSM682194", "GSM682193", "GSM682205", "GSM682204", "GSM682203", "GSM682202", "GSM682201", "GSM682192", "GSM682154", "GSM682153", "GSM682152", "GSM682151", "GSM682150", "GSM682149", "GSM682148", "GSM682147", "GSM682159", "GSM682158", "GSM682157", "GSM682156", "GSM682155", "GSM682146" ], "type": "disease state", "id": "GDS3953_1" }, { "dataset_id": "GDS3953", "description": "advanced mammary tumor", "sample_id": [ "GSM682214", "GSM682213", "GSM682212", "GSM682211", "GSM682210", "GSM682209", "GSM682238", "GSM682237", "GSM682236", "GSM682235", "GSM682208", "GSM682234", "GSM682233", "GSM682232", "GSM682231", "GSM682230", "GSM682229", "GSM682228", "GSM682227", "GSM682226", "GSM682225", "GSM682207", "GSM682224", "GSM682223", "GSM682222", "GSM682221", "GSM682220", "GSM682219", "GSM682218", "GSM682217", "GSM682216", "GSM682215", "GSM682206", "GSM682168", "GSM682167", "GSM682166", "GSM682165", "GSM682164", "GSM682163", "GSM682191", "GSM682190", "GSM682189", "GSM682162", "GSM682188", "GSM682187", "GSM682186", "GSM682185", "GSM682184", "GSM682183", "GSM682182", "GSM682181", "GSM682180", "GSM682179", "GSM682161", "GSM682178", "GSM682177", "GSM682176", "GSM682175", "GSM682174", "GSM682173", "GSM682172", "GSM682171", "GSM682170", "GSM682169", "GSM682160" ], "type": "disease state", "id": "GDS3953_2" }, { "dataset_id": "GDS3953", "description": "training set", "sample_id": [ "GSM682160", "GSM682169", "GSM682170", "GSM682171", "GSM682172", "GSM682173", "GSM682174", "GSM682175", "GSM682176", "GSM682177", "GSM682178", "GSM682161", "GSM682179", "GSM682180", "GSM682181", "GSM682182", "GSM682183", "GSM682184", "GSM682185", "GSM682186", "GSM682187", "GSM682188", "GSM682162", "GSM682189", "GSM682190", "GSM682191", "GSM682163", "GSM682164", "GSM682165", "GSM682166", "GSM682167", "GSM682168", "GSM682146", "GSM682155", "GSM682156", "GSM682157", "GSM682158", "GSM682159", "GSM682147", "GSM682148", "GSM682149", "GSM682150", "GSM682151", "GSM682152", "GSM682153", "GSM682154" ], "type": "protocol", "id": "GDS3953_3" }, { "dataset_id": "GDS3953", "description": "validation set", "sample_id": [ "GSM682206", "GSM682215", "GSM682216", "GSM682217", "GSM682218", "GSM682219", "GSM682220", "GSM682221", "GSM682222", "GSM682223", "GSM682224", "GSM682207", "GSM682225", "GSM682226", "GSM682227", "GSM682228", "GSM682229", "GSM682230", "GSM682231", "GSM682232", "GSM682233", "GSM682234", "GSM682208", "GSM682235", "GSM682236", "GSM682237", "GSM682238", "GSM682209", "GSM682210", "GSM682211", "GSM682212", "GSM682213", "GSM682214", "GSM682192", "GSM682201", "GSM682202", "GSM682203", "GSM682204", "GSM682205", "GSM682193", "GSM682194", "GSM682195", "GSM682196", "GSM682197", "GSM682198", "GSM682199", "GSM682200" ], "type": "protocol", "id": "GDS3953_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3953", "version": 1.0, "instances": "93", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3953.tab", "compression": "gz" } ], [ [ "GDS3954.tab" ], { "title": "Polychlorobiphenyl non-coplanar congener PCB-153 effect on liver cell line", "description": "Analysis of a metabolically competent HepG2 cells exposed to PCB-153, a prototype non-coplanar congener of polychlorobiphenyls (PCB). Different congeners of PCB lead to varying degrees of cellular oxidative stress. Results provide insight into the mechanism of action of non-coplanar PCB congeners.", "type": "Expression profiling by array", "pubmed_id": "20638727", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE6878", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS3954", "description": "untreated", "sample_id": [ "GSM149381", "GSM149382", "GSM149383", "GSM154182", "GSM154183", "GSM154184" ], "type": "agent", "id": "GDS3954_1" }, { "dataset_id": "GDS3954", "description": "PCB-153", "sample_id": [ "GSM149384", "GSM149385", "GSM149386", "GSM149387", "GSM149388", "GSM149389", "GSM149390", "GSM149391", "GSM149392", "GSM149393" ], "type": "agent", "id": "GDS3954_2" }, { "dataset_id": "GDS3954", "description": "0 hrs", "sample_id": [ "GSM149381", "GSM149382", "GSM149383" ], "type": "time", "id": "GDS3954_3" }, { "dataset_id": "GDS3954", "description": "0.5 hrs", "sample_id": [ "GSM149384", "GSM149385", "GSM149386" ], "type": "time", "id": "GDS3954_4" }, { "dataset_id": "GDS3954", "description": "1.5 hrs", "sample_id": [ "GSM149387", "GSM149388" ], "type": "time", "id": "GDS3954_5" }, { "dataset_id": "GDS3954", "description": "6 hrs", "sample_id": [ "GSM149389", "GSM149390" ], "type": "time", "id": "GDS3954_6" }, { "dataset_id": "GDS3954", "description": "18 hrs", "sample_id": [ "GSM149391", "GSM149392", "GSM149393", "GSM154182", "GSM154183", "GSM154184" ], "type": "time", "id": "GDS3954_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3954", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3954.tab", "compression": "gz" } ], [ [ "GDS3955.tab" ], { "title": "Polychlorobiphenyl coplanar congener PCB-77 effect on liver cell line", "description": "Analysis of a metabolically competent liver cell line HepG2 exposed to coplanar PCB-77, a prototype congener of polychlorobiphenyls (PCB). Different congeners of PCB lead to varying degrees of cellular oxidative stress. Results provide insight into the mechanism of action of coplanar PCB congeners.", "type": "Expression profiling by array", "pubmed_id": "20638727", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6878", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS3955", "description": "untreated", "sample_id": [ "GSM158373", "GSM158374", "GSM158375" ], "type": "agent", "id": "GDS3955_1" }, { "dataset_id": "GDS3955", "description": "PCB-77", "sample_id": [ "GSM158376", "GSM158377", "GSM158378", "GSM158379", "GSM158380", "GSM158381", "GSM158382", "GSM158383", "GSM158384" ], "type": "agent", "id": "GDS3955_2" }, { "dataset_id": "GDS3955", "description": "0 hrs", "sample_id": [ "GSM158373", "GSM158374", "GSM158375" ], "type": "time", "id": "GDS3955_3" }, { "dataset_id": "GDS3955", "description": "0.5 hrs", "sample_id": [ "GSM158376", "GSM158377", "GSM158378" ], "type": "time", "id": "GDS3955_4" }, { "dataset_id": "GDS3955", "description": "6 hrs", "sample_id": [ "GSM158379", "GSM158380", "GSM158381" ], "type": "time", "id": "GDS3955_5" }, { "dataset_id": "GDS3955", "description": "24 hrs", "sample_id": [ "GSM158382", "GSM158383", "GSM158384" ], "type": "time", "id": "GDS3955_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3955", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3955.tab", "compression": "gz" } ], [ [ "GDS3956.tab" ], { "title": "Cereal crop reproductive development: multiple stages and organs (Affymetrix)", "description": "Analysis of 25 finely dissected stages/organs of the reproductive process encompassing anther development, pollination-fertilization, and embryogenensis. Vegetative tissues were used as controls. Results provide insight into molecular mechanisms underlying the reproductive process.", "type": "Expression profiling by array", "pubmed_id": "21062870", "platform": "GPL2025", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "57381", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "98", "value_type": "transformed count", "reference_series": "GSE14304", "order": "none", "update_date": "Jun 19 2012", "subsets": [ { "dataset_id": "GDS3956", "description": "anther development", "sample_id": [ "GSM351427", "GSM351428", "GSM351429", "GSM351433", "GSM351434", "GSM351435", "GSM351436", "GSM351437", "GSM351438", "GSM351439", "GSM351440", "GSM351441", "GSM351442", "GSM351443", "GSM351430", "GSM351431", "GSM351432", "GSM351444", "GSM351445", "GSM351446", "GSM351447", "GSM351448", "GSM351449", "GSM351450", "GSM351451", "GSM351452" ], "type": "development stage", "id": "GDS3956_1" }, { "dataset_id": "GDS3956", "description": "pollination-fertilization", "sample_id": [ "GSM357628", "GSM357629", "GSM357630", "GSM357617", "GSM357618", "GSM357619", "GSM357625", "GSM357626", "GSM357627", "GSM357622", "GSM357623", "GSM357624", "GSM357620", "GSM357621", "GSM357614", "GSM357615", "GSM357616", "GSM357631", "GSM357632", "GSM357633" ], "type": "development stage", "id": "GDS3956_2" }, { "dataset_id": "GDS3956", "description": "embryogenesis", "sample_id": [ "GSM357639", "GSM357640", "GSM357641", "GSM357654", "GSM357655", "GSM357642", "GSM357643", "GSM357644", "GSM357656", "GSM357657", "GSM357645", "GSM357646", "GSM357647", "GSM357658", "GSM357659", "GSM357648", "GSM357649", "GSM357650", "GSM357660", "GSM357661", "GSM357662", "GSM357636", "GSM357637", "GSM357638", "GSM357651", "GSM357652", "GSM357653" ], "type": "development stage", "id": "GDS3956_3" }, { "dataset_id": "GDS3956", "description": "vegetative tissues", "sample_id": [ "GSM357664", "GSM357665", "GSM357666", "GSM357667", "GSM357668", "GSM357669", "GSM357670", "GSM357671", "GSM357672", "GSM357673", "GSM357674", "GSM357675", "GSM357676", "GSM357677", "GSM357678", "GSM357679", "GSM357680", "GSM357681", "GSM357682", "GSM357683", "GSM357684", "GSM357685", "GSM357686", "GSM357687", "GSM357688" ], "type": "development stage", "id": "GDS3956_4" }, { "dataset_id": "GDS3956", "description": "Stage ID: An1", "sample_id": [ "GSM351427", "GSM351428", "GSM351429" ], "type": "other", "id": "GDS3956_5" }, { "dataset_id": "GDS3956", "description": "Stage ID: Mei1", "sample_id": [ "GSM351430", "GSM351431", "GSM351432" ], "type": "other", "id": "GDS3956_6" }, { "dataset_id": "GDS3956", "description": "Stage ID: M1", "sample_id": [ "GSM351433", "GSM351434", "GSM351435", "GSM351436" ], "type": "other", "id": "GDS3956_7" }, { "dataset_id": "GDS3956", "description": "Stage ID: M2", "sample_id": [ "GSM351437", "GSM351438", "GSM351439" ], "type": "other", "id": "GDS3956_8" }, { "dataset_id": "GDS3956", "description": "Stage ID: M3", "sample_id": [ "GSM351440", "GSM351441", "GSM351442", "GSM351443" ], "type": "other", "id": "GDS3956_9" }, { "dataset_id": "GDS3956", "description": "Stage ID: P1", "sample_id": [ "GSM351444", "GSM351445", "GSM351446" ], "type": "other", "id": "GDS3956_10" }, { "dataset_id": "GDS3956", "description": "Stage ID: P2", "sample_id": [ "GSM351447", "GSM351448", "GSM351449" ], "type": "other", "id": "GDS3956_11" }, { "dataset_id": "GDS3956", "description": "Stage ID: P3", "sample_id": [ "GSM351450", "GSM351451", "GSM351452" ], "type": "other", "id": "GDS3956_12" }, { "dataset_id": "GDS3956", "description": "Stage ID: St-0", "sample_id": [ "GSM357614", "GSM357615", "GSM357616" ], "type": "other", "id": "GDS3956_13" }, { "dataset_id": "GDS3956", "description": "Stage ID: Ov-0", "sample_id": [ "GSM357617", "GSM357618", "GSM357619" ], "type": "other", "id": "GDS3956_14" }, { "dataset_id": "GDS3956", "description": "Stage ID: Poll 1", "sample_id": [ "GSM357620", "GSM357621" ], "type": "other", "id": "GDS3956_15" }, { "dataset_id": "GDS3956", "description": "Stage ID: Ov-1", "sample_id": [ "GSM357622", "GSM357623", "GSM357624" ], "type": "other", "id": "GDS3956_16" }, { "dataset_id": "GDS3956", "description": "Stage ID: Poll 2", "sample_id": [ "GSM357625", "GSM357626", "GSM357627" ], "type": "other", "id": "GDS3956_17" }, { "dataset_id": "GDS3956", "description": "Stage ID: Fer1", "sample_id": [ "GSM357628", "GSM357629", "GSM357630" ], "type": "other", "id": "GDS3956_18" }, { "dataset_id": "GDS3956", "description": "Stage ID: Fer2", "sample_id": [ "GSM357631", "GSM357632", "GSM357633" ], "type": "other", "id": "GDS3956_19" }, { "dataset_id": "GDS3956", "description": "Stage ID: Em0", "sample_id": [ "GSM357636", "GSM357637", "GSM357638" ], "type": "other", "id": "GDS3956_20" }, { "dataset_id": "GDS3956", "description": "Stage ID: Em1", "sample_id": [ "GSM357639", "GSM357640", "GSM357641" ], "type": "other", "id": "GDS3956_21" }, { "dataset_id": "GDS3956", "description": "Stage ID: Em2", "sample_id": [ "GSM357642", "GSM357643", "GSM357644" ], "type": "other", "id": "GDS3956_22" }, { "dataset_id": "GDS3956", "description": "Stage ID: Em5", "sample_id": [ "GSM357645", "GSM357646", "GSM357647" ], "type": "other", "id": "GDS3956_23" }, { "dataset_id": "GDS3956", "description": "Stage ID: Em7", "sample_id": [ "GSM357648", "GSM357649", "GSM357650" ], "type": "other", "id": "GDS3956_24" }, { "dataset_id": "GDS3956", "description": "Stage ID: Es0", "sample_id": [ "GSM357651", "GSM357652", "GSM357653" ], "type": "other", "id": "GDS3956_25" }, { "dataset_id": "GDS3956", "description": "Stage ID: Es1", "sample_id": [ "GSM357654", "GSM357655" ], "type": "other", "id": "GDS3956_26" }, { "dataset_id": "GDS3956", "description": "Stage ID: Es2", "sample_id": [ "GSM357656", "GSM357657" ], "type": "other", "id": "GDS3956_27" }, { "dataset_id": "GDS3956", "description": "Stage ID: Es5", "sample_id": [ "GSM357658", "GSM357659" ], "type": "other", "id": "GDS3956_28" }, { "dataset_id": "GDS3956", "description": "Stage ID: Es7", "sample_id": [ "GSM357660", "GSM357661", "GSM357662" ], "type": "other", "id": "GDS3956_29" }, { "dataset_id": "GDS3956", "description": "Stage ID: C0", "sample_id": [ "GSM357664", "GSM357665", "GSM357666" ], "type": "other", "id": "GDS3956_30" }, { "dataset_id": "GDS3956", "description": "Stage ID: C2", "sample_id": [ "GSM357667", "GSM357668", "GSM357669" ], "type": "other", "id": "GDS3956_31" }, { "dataset_id": "GDS3956", "description": "Stage ID: C4", "sample_id": [ "GSM357670", "GSM357671", "GSM357672" ], "type": "other", "id": "GDS3956_32" }, { "dataset_id": "GDS3956", "description": "Stage ID: C6", "sample_id": [ "GSM357673", "GSM357674", "GSM357675" ], "type": "other", "id": "GDS3956_33" }, { "dataset_id": "GDS3956", "description": "Stage ID: C8", "sample_id": [ "GSM357676", "GSM357677", "GSM357678" ], "type": "other", "id": "GDS3956_34" }, { "dataset_id": "GDS3956", "description": "Stage ID: R", "sample_id": [ "GSM357679", "GSM357680", "GSM357681" ], "type": "other", "id": "GDS3956_35" }, { "dataset_id": "GDS3956", "description": "Stage ID: S", "sample_id": [ "GSM357682", "GSM357683", "GSM357684" ], "type": "other", "id": "GDS3956_36" }, { "dataset_id": "GDS3956", "description": "Stage ID: YL", "sample_id": [ "GSM357685", "GSM357686", "GSM357687", "GSM357688" ], "type": "other", "id": "GDS3956_37" } ], "taxid": "4530", "genes": 50377, "aggregation_function": "mean", "name": "GDS3956", "version": 1.0, "instances": "98", "variables": 50380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3956.tab", "compression": "gz" } ], [ [ "GDS3957.tab" ], { "title": "Cereal crop reproductive development: anther (Agilent)", "description": "Analysis of anther development across multiple stages from hypodermal archesporial cells formation (Stage ID: An1) to tri-cellular mature pollen (Stage ID: P3). The same RNA samples were used for Agilent and Affymetrix experiments. Results provide insight into the reliability of the Affymetrix data.", "type": "Expression profiling by array", "pubmed_id": "21062870", "platform": "GPL8852", "platform_organism": "Oryza sativa", "platform_technology_type": "in situ oligonucleotide", "feature_count": "42538", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE14304", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3957", "description": "Stage ID: An1", "sample_id": [ "GSM357690", "GSM357691" ], "type": "development stage", "id": "GDS3957_1" }, { "dataset_id": "GDS3957", "description": "Stage ID: Mei1", "sample_id": [ "GSM357692", "GSM357693" ], "type": "development stage", "id": "GDS3957_2" }, { "dataset_id": "GDS3957", "description": "Stage ID: M1", "sample_id": [ "GSM357694", "GSM357695" ], "type": "development stage", "id": "GDS3957_3" }, { "dataset_id": "GDS3957", "description": "Stage ID: M2", "sample_id": [ "GSM357696", "GSM357697" ], "type": "development stage", "id": "GDS3957_4" }, { "dataset_id": "GDS3957", "description": "Stage ID: M3", "sample_id": [ "GSM357698", "GSM357699" ], "type": "development stage", "id": "GDS3957_5" }, { "dataset_id": "GDS3957", "description": "Stage ID: P1", "sample_id": [ "GSM357700", "GSM357701" ], "type": "development stage", "id": "GDS3957_6" }, { "dataset_id": "GDS3957", "description": "Stage ID: P2", "sample_id": [ "GSM357702", "GSM357703" ], "type": "development stage", "id": "GDS3957_7" }, { "dataset_id": "GDS3957", "description": "Stage ID: P3", "sample_id": [ "GSM357704", "GSM357705" ], "type": "development stage", "id": "GDS3957_8" } ], "taxid": "4530", "genes": 33865, "aggregation_function": "mean", "name": "GDS3957", "version": 1.0, "instances": "16", "variables": 33867, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3957.tab", "compression": "gz" } ], [ [ "GDS3958.tab" ], { "title": "Preimplantation embryonic development (MOE430A)", "description": "Analysis of embryos at different stages of preimplantation embryonic development (PED): one-cell, two-cell, four-cell, eight-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.", "type": "Expression profiling by array", "pubmed_id": "20219939", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE18290", "order": "ordered", "update_date": "Dec 23 2011", "subsets": [ { "dataset_id": "GDS3958", "description": "1-cell embryo", "sample_id": [ "GSM456661", "GSM456662", "GSM456663" ], "type": "development stage", "id": "GDS3958_1" }, { "dataset_id": "GDS3958", "description": "2-cell embryo", "sample_id": [ "GSM456664", "GSM456665", "GSM456666" ], "type": "development stage", "id": "GDS3958_2" }, { "dataset_id": "GDS3958", "description": "4-cell embryo", "sample_id": [ "GSM456667", "GSM456668", "GSM456669" ], "type": "development stage", "id": "GDS3958_3" }, { "dataset_id": "GDS3958", "description": "8-cell embryo", "sample_id": [ "GSM456670", "GSM456671", "GSM456672" ], "type": "development stage", "id": "GDS3958_4" }, { "dataset_id": "GDS3958", "description": "morula", "sample_id": [ "GSM456673", "GSM456674", "GSM456675" ], "type": "development stage", "id": "GDS3958_5" }, { "dataset_id": "GDS3958", "description": "blastocyst", "sample_id": [ "GSM456676", "GSM456677", "GSM456678" ], "type": "development stage", "id": "GDS3958_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS3958", "version": 1.0, "instances": "18", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3958.tab", "compression": "gz" } ], [ [ "GDS3959.tab" ], { "title": "Preimplantation embryonic development (HG-U133_Plus_2)", "description": "Analysis of embryos at different stages of preimplantation embryonic development (PED): one-cell, two-cell, four-cell, eight-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.", "type": "Expression profiling by array", "pubmed_id": "20219939", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE18290", "order": "ordered", "update_date": "Dec 23 2011", "subsets": [ { "dataset_id": "GDS3959", "description": "1-cell embryo", "sample_id": [ "GSM456643", "GSM456644", "GSM456645" ], "type": "development stage", "id": "GDS3959_1" }, { "dataset_id": "GDS3959", "description": "2-cell embryo", "sample_id": [ "GSM456646", "GSM456647", "GSM456648" ], "type": "development stage", "id": "GDS3959_2" }, { "dataset_id": "GDS3959", "description": "4-cell embryo", "sample_id": [ "GSM456649", "GSM456650", "GSM456651" ], "type": "development stage", "id": "GDS3959_3" }, { "dataset_id": "GDS3959", "description": "8-cell embryo", "sample_id": [ "GSM456652", "GSM456653", "GSM456654" ], "type": "development stage", "id": "GDS3959_4" }, { "dataset_id": "GDS3959", "description": "morula", "sample_id": [ "GSM456655", "GSM456656", "GSM456657" ], "type": "development stage", "id": "GDS3959_5" }, { "dataset_id": "GDS3959", "description": "blastocyst", "sample_id": [ "GSM456658", "GSM456659", "GSM456660" ], "type": "development stage", "id": "GDS3959_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3959", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3959.tab", "compression": "gz" } ], [ [ "GDS3960.tab" ], { "title": "Preimplantation embryonic development (Bovine)", "description": "Analysis of embryos at different stages of preimplantation embryonic development (PED): oocyte, one-cell, two-cell, four-cell, eight-cell, 16-cell, morula, and blastocyst. The progression of PED is highly conserved among mammals. Results provide insight into molecular mechanisms underlying PED.", "type": "Expression profiling by array", "pubmed_id": "20219939", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE18290", "order": "ordered", "update_date": "Dec 23 2011", "subsets": [ { "dataset_id": "GDS3960", "description": "oocyte", "sample_id": [ "GSM456627", "GSM456628" ], "type": "development stage", "id": "GDS3960_1" }, { "dataset_id": "GDS3960", "description": "1-cell embryo", "sample_id": [ "GSM456629", "GSM456630" ], "type": "development stage", "id": "GDS3960_2" }, { "dataset_id": "GDS3960", "description": "2-cell embryo", "sample_id": [ "GSM456631", "GSM456632" ], "type": "development stage", "id": "GDS3960_3" }, { "dataset_id": "GDS3960", "description": "4-cell embryo", "sample_id": [ "GSM456633", "GSM456634" ], "type": "development stage", "id": "GDS3960_4" }, { "dataset_id": "GDS3960", "description": "8-cell embryo", "sample_id": [ "GSM456635", "GSM456636" ], "type": "development stage", "id": "GDS3960_5" }, { "dataset_id": "GDS3960", "description": "16-cell embryo", "sample_id": [ "GSM456637", "GSM456638" ], "type": "development stage", "id": "GDS3960_6" }, { "dataset_id": "GDS3960", "description": "morula", "sample_id": [ "GSM456639", "GSM456640" ], "type": "development stage", "id": "GDS3960_7" }, { "dataset_id": "GDS3960", "description": "blastocyst", "sample_id": [ "GSM456641", "GSM456642" ], "type": "development stage", "id": "GDS3960_8" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS3960", "version": 1.0, "instances": "16", "variables": 19375, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3960.tab", "compression": "gz" } ], [ [ "GDS3961.tab" ], { "title": "Adipogenesis and obesity: subcutaneous adipose tissue (HG-U133_Plus_2)", "description": "Analysis of adipose tissue from subjects (BMI 16.7-50.2) with normal or impaired glucose tolerance, or type 2 diabetes. Adipocytes regulate energy balance and glucose homeostasis. These results, together with miRNA profiling results, provide insight into molecular basis of adipogenesis and obesity.", "type": "Expression profiling by array", "pubmed_id": "21426570", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE27951", "order": "none", "update_date": "Dec 23 2011", "subsets": [ { "dataset_id": "GDS3961", "description": "type 2 diabetes", "sample_id": [ "GSM691125", "GSM691129", "GSM691133", "GSM691136", "GSM691137", "GSM691138", "GSM691139", "GSM691141", "GSM691142", "GSM691144", "GSM691148" ], "type": "disease state", "id": "GDS3961_1" }, { "dataset_id": "GDS3961", "description": "impaired glucose tolerance", "sample_id": [ "GSM691126", "GSM691127", "GSM691128", "GSM691132", "GSM691140", "GSM691145", "GSM691146", "GSM691149", "GSM691151", "GSM691152" ], "type": "disease state", "id": "GDS3961_2" }, { "dataset_id": "GDS3961", "description": "normal glucose tolerance", "sample_id": [ "GSM691122", "GSM691123", "GSM691124", "GSM691130", "GSM691131", "GSM691134", "GSM691135", "GSM691143", "GSM691147", "GSM691150", "GSM691153", "GSM691154" ], "type": "disease state", "id": "GDS3961_3" }, { "dataset_id": "GDS3961", "description": "non-obese", "sample_id": [ "GSM691151", "GSM691152", "GSM691153", "GSM691136", "GSM691154", "GSM691143", "GSM691135", "GSM691148", "GSM691150", "GSM691147", "GSM691139", "GSM691133", "GSM691149", "GSM691140", "GSM691137", "GSM691141" ], "type": "individual", "id": "GDS3961_4" }, { "dataset_id": "GDS3961", "description": "obese", "sample_id": [ "GSM691138", "GSM691142", "GSM691124", "GSM691146", "GSM691134", "GSM691145", "GSM691123", "GSM691127", "GSM691131", "GSM691130", "GSM691122", "GSM691144", "GSM691132", "GSM691126", "GSM691128", "GSM691125", "GSM691129" ], "type": "individual", "id": "GDS3961_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3961", "version": 1.0, "instances": "33", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3961.tab", "compression": "gz" } ], [ [ "GDS3962.tab" ], { "title": "Obesity-associated insulin resistance independent of BMI: omental and subcutaneous adipose tissues", "description": "Analysis of omental and subcutaneous adipose tissue samples from a body mass index (BMI)-matched, morbidly-obese cohort of patients that are either insulin-sensitive or insulin-resistant. Results provide insight into mechanisms underlying obesity-related insulin resistance independent of BMI.", "type": "Expression profiling by array", "pubmed_id": "20678967", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE15773", "order": "none", "update_date": "Jun 18 2012", "subsets": [ { "dataset_id": "GDS3962", "description": "insulin resistant", "sample_id": [ "GSM395777", "GSM395787", "GSM395776", "GSM395786", "GSM395775", "GSM395785", "GSM395784", "GSM395774", "GSM395783" ], "type": "disease state", "id": "GDS3962_1" }, { "dataset_id": "GDS3962", "description": "insulin sensitive", "sample_id": [ "GSM395788", "GSM395778", "GSM395789", "GSM395779", "GSM395790", "GSM395780", "GSM395791", "GSM395781", "GSM395792", "GSM395782" ], "type": "disease state", "id": "GDS3962_2" }, { "dataset_id": "GDS3962", "description": "subcutaneous adipose tissue", "sample_id": [ "GSM395774", "GSM395775", "GSM395776", "GSM395777", "GSM395778", "GSM395779", "GSM395780", "GSM395781", "GSM395782" ], "type": "tissue", "id": "GDS3962_3" }, { "dataset_id": "GDS3962", "description": "omental adipose tissue", "sample_id": [ "GSM395783", "GSM395784", "GSM395785", "GSM395786", "GSM395787", "GSM395788", "GSM395789", "GSM395790", "GSM395791", "GSM395792" ], "type": "tissue", "id": "GDS3962_4" }, { "dataset_id": "GDS3962", "description": "female", "sample_id": [ "GSM395775", "GSM395777", "GSM395778", "GSM395779", "GSM395780", "GSM395781", "GSM395782", "GSM395784", "GSM395785", "GSM395787", "GSM395788", "GSM395789", "GSM395790", "GSM395791", "GSM395792" ], "type": "gender", "id": "GDS3962_5" }, { "dataset_id": "GDS3962", "description": "male", "sample_id": [ "GSM395774", "GSM395776", "GSM395783", "GSM395786" ], "type": "gender", "id": "GDS3962_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3962", "version": 1.0, "instances": "19", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3962.tab", "compression": "gz" } ], [ [ "GDS3963.tab" ], { "title": "Pre-diabetes and Type 2 Diabetes mellitus: blood", "description": "Analysis of blood after an overnight fast from Impaired Fasting Glucose, commonly called pre-diabetes, and Type 2 Diabetes mellitus (T2D) male patients. These results, together with miRNA profiling, provide insight into the mechanisms underlying the transition from pre-diabetes to overt T2D.", "type": "Expression profiling by array", "pubmed_id": "21829658", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE26168", "order": "none", "update_date": "Jun 12 2012", "subsets": [ { "dataset_id": "GDS3963", "description": "control", "sample_id": [ "GSM532819", "GSM532820", "GSM532821", "GSM532822", "GSM532823", "GSM532824", "GSM532825", "GSM532826" ], "type": "disease state", "id": "GDS3963_1" }, { "dataset_id": "GDS3963", "description": "impaired fasting glucose", "sample_id": [ "GSM532827", "GSM532828", "GSM532829", "GSM532830", "GSM532831", "GSM532832", "GSM532833" ], "type": "disease state", "id": "GDS3963_2" }, { "dataset_id": "GDS3963", "description": "Type 2 diabetes", "sample_id": [ "GSM532834", "GSM532835", "GSM532836", "GSM532837", "GSM532838", "GSM532839", "GSM532840", "GSM532841", "GSM532842" ], "type": "disease state", "id": "GDS3963_3" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS3963", "version": 1.0, "instances": "24", "variables": 19337, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3963.tab", "compression": "gz" } ], [ [ "GDS3964.tab" ], { "title": "Xenotransplant melanoma metastasis model [Data Set A]", "description": "Analysis of subcutaneous tumors or lung metastases from immunodeficient mice injected subcutaneously or intravenously with a poorly-metastatic A375 melanoma cell line (ATCC) or with highly-metastatic derivative cell lines. Results provide insight into the molecular mechanisms underlying metastasis.", "type": "Expression profiling by array", "pubmed_id": "18505921", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE7929", "order": "none", "update_date": "Jun 17 2012", "subsets": [ { "dataset_id": "GDS3964", "description": "A375 melanoma cell line (parental)", "sample_id": [ "GSM155029", "GSM155030", "GSM155031", "GSM155032", "GSM155033", "GSM155034", "GSM155035", "GSM155036", "GSM155037", "GSM155038", "GSM155039" ], "type": "cell line", "id": "GDS3964_1" }, { "dataset_id": "GDS3964", "description": "metastatic derivative MA1", "sample_id": [ "GSM155058", "GSM155043", "GSM155044", "GSM155047", "GSM155048" ], "type": "cell line", "id": "GDS3964_2" }, { "dataset_id": "GDS3964", "description": "metastatic derivative MA2", "sample_id": [ "GSM155059", "GSM155045", "GSM155046", "GSM155052", "GSM155053", "GSM155054" ], "type": "cell line", "id": "GDS3964_3" }, { "dataset_id": "GDS3964", "description": "metastatic derivative MC1", "sample_id": [ "GSM155040", "GSM155060", "GSM155049", "GSM155050", "GSM155051" ], "type": "cell line", "id": "GDS3964_4" }, { "dataset_id": "GDS3964", "description": "metastatic derivative MC2", "sample_id": [ "GSM155042", "GSM155041", "GSM155055", "GSM155056", "GSM155057" ], "type": "cell line", "id": "GDS3964_5" }, { "dataset_id": "GDS3964", "description": "poorly metastatic", "sample_id": [ "GSM155029", "GSM155038", "GSM155039", "GSM155030", "GSM155031", "GSM155032", "GSM155033", "GSM155034", "GSM155035", "GSM155036", "GSM155037" ], "type": "disease state", "id": "GDS3964_6" }, { "dataset_id": "GDS3964", "description": "highly metastatic", "sample_id": [ "GSM155058", "GSM155043", "GSM155044", "GSM155047", "GSM155048", "GSM155059", "GSM155045", "GSM155046", "GSM155052", "GSM155053", "GSM155054", "GSM155040", "GSM155060", "GSM155049", "GSM155050", "GSM155051", "GSM155042", "GSM155041", "GSM155055", "GSM155056", "GSM155057" ], "type": "disease state", "id": "GDS3964_7" }, { "dataset_id": "GDS3964", "description": "subcutaneous tumor", "sample_id": [ "GSM155052", "GSM155047", "GSM155048", "GSM155053", "GSM155054", "GSM155049", "GSM155050", "GSM155051", "GSM155055", "GSM155056", "GSM155057", "GSM155029", "GSM155038", "GSM155039", "GSM155030", "GSM155031", "GSM155032", "GSM155033", "GSM155034", "GSM155035", "GSM155036", "GSM155037" ], "type": "tissue", "id": "GDS3964_8" }, { "dataset_id": "GDS3964", "description": "lung metastases", "sample_id": [ "GSM155058", "GSM155043", "GSM155044", "GSM155059", "GSM155045", "GSM155046", "GSM155040", "GSM155060", "GSM155042", "GSM155041" ], "type": "tissue", "id": "GDS3964_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3964", "version": 1.0, "instances": "32", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3964.tab", "compression": "gz" } ], [ [ "GDS3965.tab" ], { "title": "Xenotransplant melanoma metastasis model [Data Set F]", "description": "Analysis of subcutaneous tumors or lung metastases from immunodeficient mice injected subcutaneously or intravenously with a poorly-metastatic A375 melanoma cell line (Fidler) or with highly-metastatic derivative cell lines. Results provide insight into molecular mechanisms underlying metastasis.", "type": "Expression profiling by array", "pubmed_id": "18505921", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE7956", "order": "none", "update_date": "Jun 17 2012", "subsets": [ { "dataset_id": "GDS3965", "description": "A375 melanoma cell line (parental)", "sample_id": [ "GSM195320", "GSM195321", "GSM195322", "GSM195323", "GSM195324", "GSM195325", "GSM195326", "GSM195327", "GSM195328", "GSM195329" ], "type": "cell line", "id": "GDS3965_1" }, { "dataset_id": "GDS3965", "description": "metastatic derivative MEA2", "sample_id": [ "GSM195334", "GSM195335", "GSM195349", "GSM195341", "GSM195342" ], "type": "cell line", "id": "GDS3965_2" }, { "dataset_id": "GDS3965", "description": "metastatic derivative MEA3", "sample_id": [ "GSM195336", "GSM195337", "GSM195338", "GSM195354", "GSM195355" ], "type": "cell line", "id": "GDS3965_3" }, { "dataset_id": "GDS3965", "description": "metastatic derivative MEC1", "sample_id": [ "GSM195339", "GSM195350", "GSM195343", "GSM195344", "GSM195345" ], "type": "cell line", "id": "GDS3965_4" }, { "dataset_id": "GDS3965", "description": "metastatic derivative MEC2", "sample_id": [ "GSM195340", "GSM195351", "GSM195346", "GSM195347", "GSM195348" ], "type": "cell line", "id": "GDS3965_5" }, { "dataset_id": "GDS3965", "description": "metastatic derivative MED1", "sample_id": [ "GSM195352", "GSM195353", "GSM195356", "GSM195357", "GSM195358" ], "type": "cell line", "id": "GDS3965_6" }, { "dataset_id": "GDS3965", "description": "metastatic derivative SM", "sample_id": [ "GSM195332", "GSM195333", "GSM195330", "GSM195331" ], "type": "cell line", "id": "GDS3965_7" }, { "dataset_id": "GDS3965", "description": "poorly metastatic", "sample_id": [ "GSM195320", "GSM195329", "GSM195321", "GSM195322", "GSM195323", "GSM195324", "GSM195325", "GSM195326", "GSM195327", "GSM195328" ], "type": "disease state", "id": "GDS3965_8" }, { "dataset_id": "GDS3965", "description": "highly metastatic", "sample_id": [ "GSM195334", "GSM195335", "GSM195349", "GSM195341", "GSM195342", "GSM195336", "GSM195337", "GSM195338", "GSM195354", "GSM195355", "GSM195339", "GSM195350", "GSM195343", "GSM195344", "GSM195345", "GSM195340", "GSM195351", "GSM195346", "GSM195347", "GSM195348", "GSM195352", "GSM195353", "GSM195356", "GSM195357", "GSM195358", "GSM195332", "GSM195333", "GSM195330", "GSM195331" ], "type": "disease state", "id": "GDS3965_9" }, { "dataset_id": "GDS3965", "description": "subcutaneous tumor", "sample_id": [ "GSM195320", "GSM195329", "GSM195321", "GSM195322", "GSM195323", "GSM195324", "GSM195325", "GSM195326", "GSM195327", "GSM195328", "GSM195341", "GSM195354", "GSM195355", "GSM195343", "GSM195344", "GSM195345", "GSM195346", "GSM195347", "GSM195348", "GSM195356", "GSM195357", "GSM195358", "GSM195330", "GSM195331", "GSM195342" ], "type": "tissue", "id": "GDS3965_10" }, { "dataset_id": "GDS3965", "description": "lung metastases", "sample_id": [ "GSM195337", "GSM195338", "GSM195339", "GSM195340", "GSM195334", "GSM195335", "GSM195349", "GSM195336", "GSM195350", "GSM195351", "GSM195352", "GSM195353", "GSM195332", "GSM195333" ], "type": "tissue", "id": "GDS3965_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3965", "version": 1.0, "instances": "39", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3965.tab", "compression": "gz" } ], [ [ "GDS3966.tab" ], { "title": "Melanoma metastasis", "description": "Analysis of melanoma clinical samples representing 31 primary melanomas and 52 melanoma metastases. These results, together with results from tumor samples from highly-metastatic derivatives of an A375 (ATCC) melanoma cell line, provide insight into the molecular basis of metastasis.", "type": "Expression profiling by array", "pubmed_id": "18505921", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "83", "value_type": "count", "reference_series": "GSE8401", "order": "none", "update_date": "Jun 17 2012", "subsets": [ { "dataset_id": "GDS3966", "description": "primary melanoma", "sample_id": [ "GSM207929", "GSM207930", "GSM207931", "GSM207932", "GSM207933", "GSM207934", "GSM207935", "GSM207936", "GSM207937", "GSM207938", "GSM207939", "GSM207940", "GSM207941", "GSM207942", "GSM207943", "GSM207944", "GSM207945", "GSM207946", "GSM207947", "GSM207948", "GSM207949", "GSM207950", "GSM207951", "GSM207952", "GSM207953", "GSM207954", "GSM207955", "GSM207956", "GSM207957", "GSM207958", "GSM207959" ], "type": "disease state", "id": "GDS3966_1" }, { "dataset_id": "GDS3966", "description": "melanoma metastasis", "sample_id": [ "GSM207960", "GSM207961", "GSM207962", "GSM207963", "GSM207964", "GSM207965", "GSM207966", "GSM207967", "GSM207968", "GSM207969", "GSM207970", "GSM207971", "GSM207972", "GSM207973", "GSM207974", "GSM207975", "GSM207976", "GSM207977", "GSM207978", "GSM207979", "GSM207980", "GSM207981", "GSM207982", "GSM207983", "GSM207984", "GSM207985", "GSM207986", "GSM207987", "GSM207988", "GSM207989", "GSM207990", "GSM207991", "GSM207992", "GSM207993", "GSM207994", "GSM207995", "GSM207996", "GSM207997", "GSM207998", "GSM207999", "GSM208000", "GSM208001", "GSM208002", "GSM208003", "GSM208004", "GSM208005", "GSM208006", "GSM208007", "GSM208008", "GSM208009", "GSM208010", "GSM208011" ], "type": "disease state", "id": "GDS3966_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3966", "version": 1.0, "instances": "83", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3966.tab", "compression": "gz" } ], [ [ "GDS3972.tab" ], { "title": "Hippocampus response to high-frequency stimulation of the ventrolateral thalamus", "description": "Analysis of hippocampi of males subjected to ventrolateral (VL) thalamus high-frequency stimulation (HFS). HFS of the VL thalami is used to treat the resting tremor of Parkinson's disease, a disorder that involves the neurodegeneration of the substantia nigra and brain areas such as the hippocampus.", "type": "Expression profiling by array", "pubmed_id": "21458429", "platform": "GPL11280", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log2 ratio", "reference_series": "GSE25860", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS3972", "description": "ventrolateral thalamus stimulation (DBS)", "sample_id": [ "GSM634960", "GSM634961", "GSM634962", "GSM634963" ], "type": "protocol", "id": "GDS3972_1" }, { "dataset_id": "GDS3972", "description": "sham operation", "sample_id": [ "GSM634964", "GSM634965", "GSM634966", "GSM634967" ], "type": "protocol", "id": "GDS3972_2" }, { "dataset_id": "GDS3972", "description": "naive", "sample_id": [ "GSM634968", "GSM634969", "GSM634970" ], "type": "protocol", "id": "GDS3972_3" } ], "taxid": "10116", "genes": 32940, "aggregation_function": "mean", "name": "GDS3972", "version": 1.0, "instances": "11", "variables": 32942, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3972.tab", "compression": "gz" } ], [ [ "GDS3973.tab" ], { "title": "Docetaxel resistant prostate cancer cell line", "description": "Analysis of prostate cancer cell lines resistant to docetaxel chemotherapy, DU-145R and PC-3R, which were derived from cell lines DU-145 and PC-3, respectively. Results provide insight into the molecular mechanisms underlying docetaxel resistance.", "type": "Expression profiling by array", "pubmed_id": "22027694", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE33455", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3973", "description": "DU-145: original", "sample_id": [ "GSM827130", "GSM827131", "GSM827132" ], "type": "cell line", "id": "GDS3973_1" }, { "dataset_id": "GDS3973", "description": "DU-145: docetaxel resistant", "sample_id": [ "GSM827133", "GSM827134", "GSM827135" ], "type": "cell line", "id": "GDS3973_2" }, { "dataset_id": "GDS3973", "description": "PC-3: original", "sample_id": [ "GSM827136", "GSM827137", "GSM827138" ], "type": "cell line", "id": "GDS3973_3" }, { "dataset_id": "GDS3973", "description": "PC-3: docetaxel resistant", "sample_id": [ "GSM827139", "GSM827140", "GSM827141" ], "type": "cell line", "id": "GDS3973_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3973", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3973.tab", "compression": "gz" } ], [ [ "GDS3974.tab" ], { "title": "Bone marrow mesenchymal stem cells and renal and cardiac MSC-like cells", "description": "Analysis of adult bone marrow mesenchymal stem cells (MSC) and heart- and kidney-specific MSC-like cells. Both pluripotency and retention of organ-specific functional roles characterize MSC-like cells. Results provide insight into functional similarities/differences of organ-specific MSC-like cells.", "type": "Expression profiling by array", "pubmed_id": "22099021", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE31738", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3974", "description": "bone marrow", "sample_id": [ "GSM787845", "GSM787846", "GSM787847", "GSM787848" ], "type": "tissue", "id": "GDS3974_1" }, { "dataset_id": "GDS3974", "description": "heart", "sample_id": [ "GSM787849", "GSM787850", "GSM787851", "GSM787852" ], "type": "tissue", "id": "GDS3974_2" }, { "dataset_id": "GDS3974", "description": "kidney", "sample_id": [ "GSM787853", "GSM787854", "GSM787855", "GSM787856" ], "type": "tissue", "id": "GDS3974_3" }, { "dataset_id": "GDS3974", "description": "mesenchymal stem cells (MSC)", "sample_id": [ "GSM787845", "GSM787846", "GSM787847", "GSM787848" ], "type": "cell type", "id": "GDS3974_4" }, { "dataset_id": "GDS3974", "description": "cardiac derived MSC-like cells", "sample_id": [ "GSM787849", "GSM787850", "GSM787851", "GSM787852" ], "type": "cell type", "id": "GDS3974_5" }, { "dataset_id": "GDS3974", "description": "kidney derived MSC-like cells", "sample_id": [ "GSM787853", "GSM787854", "GSM787855", "GSM787856" ], "type": "cell type", "id": "GDS3974_6" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS3974", "version": 1.0, "instances": "12", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3974.tab", "compression": "gz" } ], [ [ "GDS3975.tab" ], { "title": "Endometriosis: endometrial tissue", "description": "Analysis of endometrioma and eutopic endometrium controls. Endometriosis is a pathological condition characterized by endometrial tissue outside the normal uterine location. Results provide insight into molecular mechanisms underlying the pathology of endometriosis.", "type": "Expression profiling by array", "pubmed_id": "21436257", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE23339", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3975", "description": "control", "sample_id": [ "GSM572761", "GSM572752", "GSM572753", "GSM572754", "GSM572755", "GSM572756", "GSM572762", "GSM572764", "GSM572757" ], "type": "disease state", "id": "GDS3975_1" }, { "dataset_id": "GDS3975", "description": "endometrioma", "sample_id": [ "GSM572765", "GSM572747", "GSM572748", "GSM572749", "GSM572750", "GSM572751", "GSM572763", "GSM572758", "GSM572759", "GSM572760" ], "type": "disease state", "id": "GDS3975_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS3975", "version": 1.0, "instances": "19", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3975.tab", "compression": "gz" } ], [ [ "GDS3976.tab" ], { "title": "Premature Hematopoietic Aging model: bone marrow hematopoietic stem cells", "description": "Analysis of hematopoietic stem cells (HSCs) from mid-aged mutator females that express a proofreading-defective form of the mitochondrial DNA polymerase gamma (POLG). Results provide insight into the molecular mechanisms underlying multiple aspects of aging accelerated in the mutator model.", "type": "Expression profiling by array", "pubmed_id": "21549326", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE27686", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS3976", "description": "young (8-12 weeks)", "sample_id": [ "GSM685748", "GSM685749", "GSM685750", "GSM685757", "GSM685758", "GSM685759", "GSM685760" ], "type": "age", "id": "GDS3976_1" }, { "dataset_id": "GDS3976", "description": "mid-age (32 weeks)", "sample_id": [ "GSM685751", "GSM685752", "GSM685753", "GSM685754", "GSM685755", "GSM685756" ], "type": "age", "id": "GDS3976_2" }, { "dataset_id": "GDS3976", "description": "aged (24 months)", "sample_id": [ "GSM685745", "GSM685746", "GSM685747" ], "type": "age", "id": "GDS3976_3" }, { "dataset_id": "GDS3976", "description": "hematopoietic stem cell (HSC)", "sample_id": [ "GSM685745", "GSM685746", "GSM685747", "GSM685748", "GSM685749", "GSM685750", "GSM685751", "GSM685752", "GSM685753", "GSM685754", "GSM685755", "GSM685756" ], "type": "cell type", "id": "GDS3976_4" }, { "dataset_id": "GDS3976", "description": "common lymphoid progenitor (CLP)", "sample_id": [ "GSM685757", "GSM685758", "GSM685759", "GSM685760" ], "type": "cell type", "id": "GDS3976_5" }, { "dataset_id": "GDS3976", "description": "wild type", "sample_id": [ "GSM685745", "GSM685746", "GSM685747", "GSM685748", "GSM685749", "GSM685750" ], "type": "genotype/variation", "id": "GDS3976_6" }, { "dataset_id": "GDS3976", "description": "mutator Polgtm1Lrsn -/-", "sample_id": [ "GSM685751", "GSM685752", "GSM685753" ], "type": "genotype/variation", "id": "GDS3976_7" }, { "dataset_id": "GDS3976", "description": "wild type Polgtm1Lrsn +/+", "sample_id": [ "GSM685754", "GSM685755", "GSM685756" ], "type": "genotype/variation", "id": "GDS3976_8" }, { "dataset_id": "GDS3976", "description": "wild type Ly6D+", "sample_id": [ "GSM685757", "GSM685758" ], "type": "genotype/variation", "id": "GDS3976_9" }, { "dataset_id": "GDS3976", "description": "wild type Ly6D-", "sample_id": [ "GSM685759", "GSM685760" ], "type": "genotype/variation", "id": "GDS3976_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3976", "version": 1.0, "instances": "16", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3976.tab", "compression": "gz" } ], [ [ "GDS3977.tab" ], { "title": "Adenoid cystic carcinoma xenograft models", "description": "Analysis of xenograft tumors derived from clinical samples of adenoid cystic carcinomas (ACC) implanted into immunodeficient nu/nu mice within 36\u2009hrs of tissue being removed from the human subjects. Results provide insight into molecular mechanisms underlying the pathology of ACC.", "type": "Expression profiling by array", "pubmed_id": "21709671", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE28996", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3977", "description": "primary ACC", "sample_id": [ "GSM718434", "GSM718435", "GSM718436", "GSM718437", "GSM718438", "GSM718439", "GSM718440", "GSM718441", "GSM718442", "GSM718443" ], "type": "tissue", "id": "GDS3977_1" }, { "dataset_id": "GDS3977", "description": "xenograft ACC", "sample_id": [ "GSM718444", "GSM718445", "GSM718446", "GSM718447", "GSM718448", "GSM718449", "GSM718450", "GSM718451", "GSM718452", "GSM718453", "GSM718454", "GSM718455" ], "type": "tissue", "id": "GDS3977_2" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX11", "sample_id": [ "GSM718438" ], "type": "other", "id": "GDS3977_3" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX16", "sample_id": [ "GSM718440" ], "type": "other", "id": "GDS3977_4" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX2", "sample_id": [ "GSM718442" ], "type": "other", "id": "GDS3977_5" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX4", "sample_id": [ "GSM718437" ], "type": "other", "id": "GDS3977_6" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX6", "sample_id": [ "GSM718443" ], "type": "other", "id": "GDS3977_7" }, { "dataset_id": "GDS3977", "description": "source of xenograft ACCX9", "sample_id": [ "GSM718434" ], "type": "other", "id": "GDS3977_8" }, { "dataset_id": "GDS3977", "description": "na", "sample_id": [ "GSM718435", "GSM718436", "GSM718439", "GSM718441", "GSM718444", "GSM718446", "GSM718450", "GSM718451", "GSM718454", "GSM718455" ], "type": "other", "id": "GDS3977_9" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC42", "sample_id": [ "GSM718445" ], "type": "other", "id": "GDS3977_10" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC48", "sample_id": [ "GSM718447" ], "type": "other", "id": "GDS3977_11" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC7", "sample_id": [ "GSM718448" ], "type": "other", "id": "GDS3977_12" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC27", "sample_id": [ "GSM718449" ], "type": "other", "id": "GDS3977_13" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC7M1", "sample_id": [ "GSM718452" ], "type": "other", "id": "GDS3977_14" }, { "dataset_id": "GDS3977", "description": "xenograft source: ACC10", "sample_id": [ "GSM718453" ], "type": "other", "id": "GDS3977_15" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3977", "version": 1.0, "instances": "22", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3977.tab", "compression": "gz" } ], [ [ "GDS3978.tab" ], { "title": "Chronic cardiac pressure overload effect on adrenal medulla", "description": "Analysis of microdissected adrenal medullary tissue from C57BL/6J males subjected to cardiac hypertrophy induced by transverse aortic constriction (TAC) for 8 wks. Results provide insight into molecular mechanisms underlying adrenal hypertrophy in response to the development of cardiac hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "21547520", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21829", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3978", "description": "TAC-induced cardiac hypertrophy", "sample_id": [ "GSM543333", "GSM543335", "GSM543337" ], "type": "stress", "id": "GDS3978_1" }, { "dataset_id": "GDS3978", "description": "control", "sample_id": [ "GSM543334", "GSM543336", "GSM543338" ], "type": "stress", "id": "GDS3978_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3978", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3978.tab", "compression": "gz" } ], [ [ "GDS3980.tab" ], { "title": "Type 2 Diabetes: arterial tissue", "description": "Analysis of mammary artery specimens from type 2 diabetic (T2DM) males and nondiabetic controls. T2DM is associated with an increased risk of cardiovascular disease (CVD). Results provide insight into the molecular mechanisms leading to CVD among diabetic patients.", "type": "Expression profiling by array", "pubmed_id": [ "21926180", "22340758" ], "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE13760", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3980", "description": "type 2 diabetic", "sample_id": [ "GSM346587", "GSM346560", "GSM346563", "GSM346565", "GSM346589", "GSM346572", "GSM346579", "GSM346582", "GSM346586", "GSM346588" ], "type": "disease state", "id": "GDS3980_1" }, { "dataset_id": "GDS3980", "description": "control", "sample_id": [ "GSM346561", "GSM346566", "GSM346568", "GSM346570", "GSM346573", "GSM346575", "GSM346576", "GSM346578", "GSM346581", "GSM346584", "GSM346585" ], "type": "disease state", "id": "GDS3980_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS3980", "version": 1.0, "instances": "21", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3980.tab", "compression": "gz" } ], [ [ "GDS3981.tab" ], { "title": "Resveratrol (resVida) effect on obese men: vastus lateralis muscle biopsies", "description": "Analysis of vastus lateralis muscle from obese men after 30 days of resveratrol supplementation. Resveratrol, a calorie restriction mimetic, significantly reduced sleeping and resting metabolic rate. Results provide insight into molecular mechanisms underlying the metabolic effects of resveratrol.", "type": "Expression profiling by array", "pubmed_id": "22055504", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE32357", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3981", "description": "resveratrol", "sample_id": [ "GSM801217", "GSM801198", "GSM801200", "GSM801203", "GSM801205", "GSM801207", "GSM801209", "GSM801210", "GSM801213", "GSM801215" ], "type": "agent", "id": "GDS3981_1" }, { "dataset_id": "GDS3981", "description": "control", "sample_id": [ "GSM801216", "GSM801199", "GSM801201", "GSM801202", "GSM801204", "GSM801206", "GSM801208", "GSM801211", "GSM801212", "GSM801214" ], "type": "agent", "id": "GDS3981_2" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS3981", "version": 1.0, "instances": "20", "variables": 26598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3981.tab", "compression": "gz" } ], [ [ "GDS3982.tab" ], { "title": "C-peptide effect on streptozotocin-induced type 1 diabetes: kidney proximal tubular cells", "description": "Analysis of kidney proximal tubular cells of streptozotocin-induced, type 1 diabetes (T1D) rats treated with C-peptide for 2 hours. Proinsulin C-peptide exerts renoprotective effects in T1D. Results provide insight into molecular mechanisms underlying the protective effects of C-peptide.", "type": "Expression profiling by array", "pubmed_id": "21618400", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE24687", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3982", "description": "C-peptide", "sample_id": [ "GSM608262", "GSM608263", "GSM608264" ], "type": "agent", "id": "GDS3982_1" }, { "dataset_id": "GDS3982", "description": "control", "sample_id": [ "GSM608265", "GSM608266" ], "type": "agent", "id": "GDS3982_2" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS3982", "version": 1.0, "instances": "5", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3982.tab", "compression": "gz" } ], [ [ "GDS3983.tab" ], { "title": "Pancreatic beta cells and panel of primary tissues", "description": "Analysis of adult pancreatic beta cell-enriched fractions and duct cell-enriched fractions and other human primary tissues. Results provide insight into conserved beta cell markers for assessment of beta cell phenotype.", "type": "Expression profiling by array", "pubmed_id": "21912665", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE30803", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3983", "description": "pancreatic, endocrine cells", "sample_id": [ "GSM764167", "GSM764168", "GSM764169" ], "type": "tissue", "id": "GDS3983_1" }, { "dataset_id": "GDS3983", "description": "pancreatic, exocrine-ductal cells", "sample_id": [ "GSM764170", "GSM764171" ], "type": "tissue", "id": "GDS3983_2" }, { "dataset_id": "GDS3983", "description": "cerebrum", "sample_id": [ "GSM774041", "GSM774042" ], "type": "tissue", "id": "GDS3983_3" }, { "dataset_id": "GDS3983", "description": "cerebellum", "sample_id": [ "GSM774043", "GSM774044" ], "type": "tissue", "id": "GDS3983_4" }, { "dataset_id": "GDS3983", "description": "colon", "sample_id": [ "GSM774045", "GSM774046" ], "type": "tissue", "id": "GDS3983_5" }, { "dataset_id": "GDS3983", "description": "fetal brain", "sample_id": [ "GSM774047", "GSM774048" ], "type": "tissue", "id": "GDS3983_6" }, { "dataset_id": "GDS3983", "description": "kidney", "sample_id": [ "GSM774049", "GSM774050" ], "type": "tissue", "id": "GDS3983_7" }, { "dataset_id": "GDS3983", "description": "liver", "sample_id": [ "GSM774051", "GSM774052" ], "type": "tissue", "id": "GDS3983_8" }, { "dataset_id": "GDS3983", "description": "lung", "sample_id": [ "GSM774053", "GSM774054" ], "type": "tissue", "id": "GDS3983_9" }, { "dataset_id": "GDS3983", "description": "myocardial", "sample_id": [ "GSM774055" ], "type": "tissue", "id": "GDS3983_10" }, { "dataset_id": "GDS3983", "description": "skeletal muscle", "sample_id": [ "GSM774056", "GSM774057" ], "type": "tissue", "id": "GDS3983_11" }, { "dataset_id": "GDS3983", "description": "prostate", "sample_id": [ "GSM774058" ], "type": "tissue", "id": "GDS3983_12" }, { "dataset_id": "GDS3983", "description": "small intestine", "sample_id": [ "GSM774059", "GSM774060" ], "type": "tissue", "id": "GDS3983_13" }, { "dataset_id": "GDS3983", "description": "spleen", "sample_id": [ "GSM774061", "GSM774062" ], "type": "tissue", "id": "GDS3983_14" }, { "dataset_id": "GDS3983", "description": "stomach", "sample_id": [ "GSM774063", "GSM774064" ], "type": "tissue", "id": "GDS3983_15" }, { "dataset_id": "GDS3983", "description": "testis", "sample_id": [ "GSM774065", "GSM774066" ], "type": "tissue", "id": "GDS3983_16" }, { "dataset_id": "GDS3983", "description": "thymus", "sample_id": [ "GSM774067", "GSM774068" ], "type": "tissue", "id": "GDS3983_17" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS3983", "version": 1.0, "instances": "33", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3983.tab", "compression": "gz" } ], [ [ "GDS3984.tab" ], { "title": "Insulin-Producing Cells generated from dedifferentiated pancreatic islet cells expanded in vitro", "description": "Analysis of insulin-producing cells generated from expanded dedifferentiated islet cells induced with Redifferentiation Cocktail (RC). Results provide insight into molecular mechanisms underlying RC-induced phenotypic change in expanded islet cells towards the phenotype of uncultured islet cells.", "type": "Expression profiling by array", "pubmed_id": "21984932", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE30732", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3984", "description": "uncultured Islets", "sample_id": [ "GSM762810", "GSM762811", "GSM762812", "GSM762813" ], "type": "cell type", "id": "GDS3984_1" }, { "dataset_id": "GDS3984", "description": "expanded Islet - dedifferentiated", "sample_id": [ "GSM762814", "GSM762816", "GSM762817", "GSM762819" ], "type": "cell type", "id": "GDS3984_2" }, { "dataset_id": "GDS3984", "description": "expanded Islet - redifferentiated", "sample_id": [ "GSM762815", "GSM762818", "GSM762820" ], "type": "cell type", "id": "GDS3984_3" }, { "dataset_id": "GDS3984", "description": "na", "sample_id": [ "GSM762810", "GSM762811", "GSM762812", "GSM762813" ], "type": "growth protocol", "id": "GDS3984_4" }, { "dataset_id": "GDS3984", "description": "untreated", "sample_id": [ "GSM762814", "GSM762816", "GSM762817", "GSM762819" ], "type": "growth protocol", "id": "GDS3984_5" }, { "dataset_id": "GDS3984", "description": "redifferentiation cocktail", "sample_id": [ "GSM762815", "GSM762818", "GSM762820" ], "type": "growth protocol", "id": "GDS3984_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS3984", "version": 1.0, "instances": "11", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3984.tab", "compression": "gz" } ], [ [ "GDS3985.tab" ], { "title": "TGF-beta/Smad3 signaling blockade effect on white adipose tissue", "description": "Analysis of WAT from high fat diet-fed Smad3-/- mice and anti-TGF-beta antibody-treated, diet-induced obese (DIO) mice. Smad3 loss protects against DIO and diabetes. TGF-b signaling blockade protects against obesity and diabetes. Results provide insight into molecular mechanisms underlying diabetes.", "type": "Expression profiling by array", "pubmed_id": "21723505", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE28598", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3985", "description": "wild type", "sample_id": [ "GSM707747", "GSM707748", "GSM707749", "GSM707750" ], "type": "genotype/variation", "id": "GDS3985_1" }, { "dataset_id": "GDS3985", "description": "Smad3-/- mutant", "sample_id": [ "GSM707751", "GSM707752", "GSM707753", "GSM707754" ], "type": "genotype/variation", "id": "GDS3985_2" }, { "dataset_id": "GDS3985", "description": "diet induced obese (DIO)", "sample_id": [ "GSM707755", "GSM707756", "GSM707757", "GSM707758" ], "type": "genotype/variation", "id": "GDS3985_3" }, { "dataset_id": "GDS3985", "description": "regular diet", "sample_id": [ "GSM707747", "GSM707748", "GSM707751", "GSM707752" ], "type": "protocol", "id": "GDS3985_4" }, { "dataset_id": "GDS3985", "description": "high fat diet", "sample_id": [ "GSM707749", "GSM707750", "GSM707753", "GSM707754" ], "type": "protocol", "id": "GDS3985_5" }, { "dataset_id": "GDS3985", "description": "anti-TGF-beta neutralization antibody (1D11)", "sample_id": [ "GSM707757", "GSM707758" ], "type": "protocol", "id": "GDS3985_6" }, { "dataset_id": "GDS3985", "description": "anti-IgG isotype control antibody (13C4)", "sample_id": [ "GSM707755", "GSM707756" ], "type": "protocol", "id": "GDS3985_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3985", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3985.tab", "compression": "gz" } ], [ [ "GDS3986.tab" ], { "title": "High-fat dietary restriction effect on epididymal white adipose tissue", "description": "Analysis of epididymal WAT from C57BL/6J adult males adapted to a high-fat diet for 3 wks, then fed a high-fat diet on an ad-libitum basis (HF-AL) or on a restricted basis (HF-DR) for 12 wks. Results provide insight into molecular mechanisms underlying improved metabolic health induced by HF-DR.", "type": "Expression profiling by array", "pubmed_id": "21830320", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE27213", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3986", "description": "adaptation phase", "sample_id": [ "GSM672364", "GSM672365", "GSM672366", "GSM672367", "GSM672368", "GSM672369", "GSM672370", "GSM672371", "GSM672372", "GSM672373", "GSM672374", "GSM672375" ], "type": "protocol", "id": "GDS3986_1" }, { "dataset_id": "GDS3986", "description": "high fat diet, ad-libitum basis", "sample_id": [ "GSM672376", "GSM672377", "GSM672378", "GSM672379", "GSM672380", "GSM672381", "GSM672382", "GSM672383", "GSM672384", "GSM672385", "GSM672386", "GSM672387" ], "type": "protocol", "id": "GDS3986_2" }, { "dataset_id": "GDS3986", "description": "high fat diet, restricted basis", "sample_id": [ "GSM672388", "GSM672389", "GSM672390", "GSM672391", "GSM672392", "GSM672393", "GSM672394", "GSM672395", "GSM672396", "GSM672397", "GSM672398", "GSM672399" ], "type": "protocol", "id": "GDS3986_3" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS3986", "version": 1.0, "instances": "36", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3986.tab", "compression": "gz" } ], [ [ "GDS3987.tab" ], { "title": "Segmented filamentous bacteria gut colonization effect on nonobese diabetic mice: T cells", "description": "Analysis of T cells from spleen and gut of SFB-positive NOD mice. SFB induces a robust T-helper cell type 17 population in small-intestinal lamina propria (SI-LP). Results provide insight into molecular mechanisms underlying the strong cosegregation of SFB positivity and protection from diabetes.", "type": "Expression profiling by array", "pubmed_id": "21709219", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE29806", "order": "none", "update_date": "May 11 2012", "subsets": [ { "dataset_id": "GDS3987", "description": "large intestinal lamina propria", "sample_id": [ "GSM738800", "GSM738802", "GSM738798", "GSM738801", "GSM738803", "GSM738799" ], "type": "tissue", "id": "GDS3987_1" }, { "dataset_id": "GDS3987", "description": "small intestinal lamina propria", "sample_id": [ "GSM738790", "GSM738778", "GSM738791", "GSM738779", "GSM738786", "GSM738788", "GSM738780", "GSM738787", "GSM738789", "GSM738781" ], "type": "tissue", "id": "GDS3987_2" }, { "dataset_id": "GDS3987", "description": "spleen", "sample_id": [ "GSM738796", "GSM738782", "GSM738797", "GSM738783", "GSM738792", "GSM738794", "GSM738784", "GSM738793", "GSM738795", "GSM738785" ], "type": "tissue", "id": "GDS3987_3" }, { "dataset_id": "GDS3987", "description": "6 weeks", "sample_id": [ "GSM738785", "GSM738795", "GSM738793", "GSM738784", "GSM738794", "GSM738792", "GSM738781", "GSM738789", "GSM738787", "GSM738780", "GSM738788", "GSM738786", "GSM738799", "GSM738803", "GSM738801", "GSM738798", "GSM738802", "GSM738800" ], "type": "age", "id": "GDS3987_4" }, { "dataset_id": "GDS3987", "description": "10 weeks", "sample_id": [ "GSM738779", "GSM738791", "GSM738778", "GSM738790", "GSM738783", "GSM738797", "GSM738782", "GSM738796" ], "type": "age", "id": "GDS3987_5" }, { "dataset_id": "GDS3987", "description": "female", "sample_id": [ "GSM738800", "GSM738802", "GSM738798", "GSM738790", "GSM738778", "GSM738786", "GSM738788", "GSM738780", "GSM738796", "GSM738782", "GSM738792", "GSM738794", "GSM738784" ], "type": "gender", "id": "GDS3987_6" }, { "dataset_id": "GDS3987", "description": "male", "sample_id": [ "GSM738801", "GSM738803", "GSM738799", "GSM738791", "GSM738779", "GSM738787", "GSM738789", "GSM738781", "GSM738797", "GSM738783", "GSM738793", "GSM738795", "GSM738785" ], "type": "gender", "id": "GDS3987_7" }, { "dataset_id": "GDS3987", "description": "SFB type positive", "sample_id": [ "GSM738778", "GSM738779", "GSM738780", "GSM738781", "GSM738782", "GSM738783", "GSM738784", "GSM738785", "GSM738798", "GSM738799" ], "type": "other", "id": "GDS3987_8" }, { "dataset_id": "GDS3987", "description": "SFB type negative", "sample_id": [ "GSM738786", "GSM738787", "GSM738788", "GSM738789", "GSM738790", "GSM738791", "GSM738792", "GSM738793", "GSM738794", "GSM738795", "GSM738796", "GSM738797", "GSM738800", "GSM738801", "GSM738802", "GSM738803" ], "type": "other", "id": "GDS3987_9" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3987", "version": 1.0, "instances": "26", "variables": 25475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3987.tab", "compression": "gz" } ], [ [ "GDS3988.tab" ], { "title": "Intrahippocampal kainate model of temporal lobe epilepsy: dentate gyrus", "description": "Analysis of an animal model of focal epilepsy in which kainic acid (KA) is injected into the right posterior hippocampus. The dentate gyrus (DG) adjacent to the KA lesion and the non-lesioned contralateral side were examined in each animal. Results provide insight into molecular basis of epilepsy.", "type": "Expression profiling by array", "pubmed_id": "21695113", "platform": "GPL2896", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "36736", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE27268", "order": "none", "update_date": "Jun 17 2012", "subsets": [ { "dataset_id": "GDS3988", "description": "developed epilepsy", "sample_id": [ "GSM671511", "GSM671510", "GSM671503", "GSM671502", "GSM671513", "GSM671512", "GSM671499", "GSM671515", "GSM671498", "GSM671514", "GSM671501", "GSM671500" ], "type": "disease state", "id": "GDS3988_1" }, { "dataset_id": "GDS3988", "description": "did not develop epilepsy", "sample_id": [ "GSM671518", "GSM671517", "GSM671516", "GSM671521", "GSM671505", "GSM671520", "GSM671504", "GSM671519", "GSM671507", "GSM671506", "GSM671509", "GSM671508" ], "type": "disease state", "id": "GDS3988_2" }, { "dataset_id": "GDS3988", "description": "right dentate gyrus", "sample_id": [ "GSM671508", "GSM671500", "GSM671514", "GSM671498", "GSM671512", "GSM671506", "GSM671502", "GSM671519", "GSM671504", "GSM671521", "GSM671517", "GSM671510" ], "type": "tissue", "id": "GDS3988_3" }, { "dataset_id": "GDS3988", "description": "left dentate gyrus", "sample_id": [ "GSM671509", "GSM671501", "GSM671515", "GSM671499", "GSM671513", "GSM671507", "GSM671503", "GSM671520", "GSM671505", "GSM671516", "GSM671518", "GSM671511" ], "type": "tissue", "id": "GDS3988_4" } ], "taxid": "10116", "genes": 28629, "aggregation_function": "mean", "name": "GDS3988", "version": 1.0, "instances": "24", "variables": 28632, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3988.tab", "compression": "gz" } ], [ [ "GDS3989.tab" ], { "title": "Diabetic pregnancy model: placenta and decidua", "description": "Analysis of placentae (including decidua) of streptozotocin-induced diabetic FVB dams at gestational day E10.5. Adverse outcomes from diabetic pregnancies may be linked to compromised placental function. Results provide insight into molecular basis of placental abnormalities in diabetic pregnancies.", "type": "Expression profiling by array", "pubmed_id": "21491160", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE28277", "order": "none", "update_date": "May 14 2012", "subsets": [ { "dataset_id": "GDS3989", "description": "control", "sample_id": [ "GSM699798", "GSM699799", "GSM699800", "GSM699801", "GSM699802" ], "type": "disease state", "id": "GDS3989_1" }, { "dataset_id": "GDS3989", "description": "diabetic", "sample_id": [ "GSM699803", "GSM699804", "GSM699805", "GSM699806", "GSM699807" ], "type": "disease state", "id": "GDS3989_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3989", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3989.tab", "compression": "gz" } ], [ [ "GDS399.tab" ], { "title": "Cardiac aging", "description": "Comparison of young (3-4 month) and aged (20-22 month) male Fischer-344 heart ventricle. Reduced adrenergic signaling in the aged heart investigated.", "type": "Expression profiling by array", "pubmed_id": "12902548", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE421", "order": "ordered", "update_date": "Oct 08 2003", "subsets": [ { "dataset_id": "GDS399", "description": "3-4 month", "sample_id": [ "GSM6174", "GSM6175", "GSM6176", "GSM6177", "GSM6178" ], "type": "age", "id": "GDS399_1" }, { "dataset_id": "GDS399", "description": "20-22 month", "sample_id": [ "GSM6168", "GSM6169", "GSM6170", "GSM6171", "GSM6172", "GSM6173" ], "type": "age", "id": "GDS399_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS399", "version": 1.0, "instances": "11", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS399.tab", "compression": "gz" } ], [ [ "GDS3990.tab" ], { "title": "Uninephrectomy effect on OVE26 diabetic kidney", "description": "Analysis of kidney from 4.5 month-old OVE26 (OVE) diabetic nephropathy (DN) females following uninephrectomy of the left kidney 10 weeks prior. Uninephrectomy dramatically exacerbated DN in OVE mice. Results provide insight into the molecular basis of diabetic pathology over a short period of time.", "type": "Expression profiling by array", "pubmed_id": "21659782", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE21448", "order": "none", "update_date": "May 24 2012", "subsets": [ { "dataset_id": "GDS3990", "description": "non-diabetic", "sample_id": [ "GSM536088", "GSM536089" ], "type": "disease state", "id": "GDS3990_1" }, { "dataset_id": "GDS3990", "description": "diabetic", "sample_id": [ "GSM536090", "GSM536091" ], "type": "disease state", "id": "GDS3990_2" }, { "dataset_id": "GDS3990", "description": "uninephrectomy", "sample_id": [ "GSM536089", "GSM536091" ], "type": "protocol", "id": "GDS3990_3" }, { "dataset_id": "GDS3990", "description": "sham surgery", "sample_id": [ "GSM536090", "GSM536088" ], "type": "protocol", "id": "GDS3990_4" }, { "dataset_id": "GDS3990", "description": "control", "sample_id": [ "GSM536089", "GSM536088" ], "type": "genotype/variation", "id": "GDS3990_5" }, { "dataset_id": "GDS3990", "description": "OVE26", "sample_id": [ "GSM536091", "GSM536090" ], "type": "genotype/variation", "id": "GDS3990_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3990", "version": 1.0, "instances": "4", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3990.tab", "compression": "gz" } ], [ [ "GDS3991.tab" ], { "title": "Pancreatic islet beta-cell expression after isolation: time course", "description": "Analysis of pancreatic islet beta-cells harvested at 0 h, 24 h and 48 h after culture. Results provide insight into molecules that are detrimental to or protective of islet survival after their isolation.", "type": "Expression profiling by array", "pubmed_id": "21471441", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE27547", "order": "ordered", "update_date": "May 24 2012", "subsets": [ { "dataset_id": "GDS3991", "description": "0 hour", "sample_id": [ "GSM680266", "GSM680267", "GSM680268", "GSM680269", "GSM680270" ], "type": "time", "id": "GDS3991_1" }, { "dataset_id": "GDS3991", "description": "24 hour", "sample_id": [ "GSM680271", "GSM680272", "GSM680273", "GSM680274", "GSM680275", "GSM680276" ], "type": "time", "id": "GDS3991_2" }, { "dataset_id": "GDS3991", "description": "48 hour", "sample_id": [ "GSM680277", "GSM680278", "GSM680279", "GSM680280", "GSM680281", "GSM680282" ], "type": "time", "id": "GDS3991_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3991", "version": 1.0, "instances": "17", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3991.tab", "compression": "gz" } ], [ [ "GDS3992.tab" ], { "title": "Diabetic OVE26 glomerulus", "description": "Analysis of glomeruli isolated from kidneys of 8 week old, diabetic OVE26 males. The OVE26 type 1 mouse is a model of progressive glomerulosclerosis and decline of renal function. Results provide insight into the pathogenic mechanisms linked to diabetic nephropathy in the OVE26 model.", "type": "Expression profiling by array", "pubmed_id": "20627935", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE20844", "order": "none", "update_date": "May 24 2012", "subsets": [ { "dataset_id": "GDS3992", "description": "Non-diabetic control", "sample_id": [ "GSM519444", "GSM519445", "GSM519766" ], "type": "disease state", "id": "GDS3992_1" }, { "dataset_id": "GDS3992", "description": "Diabetic", "sample_id": [ "GSM519813", "GSM519814", "GSM519815", "GSM519816" ], "type": "disease state", "id": "GDS3992_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3992", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3992.tab", "compression": "gz" } ], [ [ "GDS3993.tab" ], { "title": "BKS db/db model of type 2 diabetes: sciatic nerve", "description": "Analysis of sciatic nerve from type 2 diabetes (T2D) BKS db/db mice at 24 weeks of age. Diabetic neuropathy (DN) is one of the most common and debilitating complications of diabetes. Results provide insight into molecular mechanisms underlying the development and progression of DN.", "type": "Expression profiling by array", "pubmed_id": "21617178", "platform": "GPL9746", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "16395", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE27382", "order": "none", "update_date": "May 24 2012", "subsets": [ { "dataset_id": "GDS3993", "description": "nondiabetic control", "sample_id": [ "GSM677105", "GSM677106", "GSM677107", "GSM677108", "GSM677109", "GSM677110", "GSM677111" ], "type": "disease state", "id": "GDS3993_1" }, { "dataset_id": "GDS3993", "description": "type 2 diabetic", "sample_id": [ "GSM677112", "GSM677113", "GSM677114", "GSM677115", "GSM677116", "GSM677117" ], "type": "disease state", "id": "GDS3993_2" }, { "dataset_id": "GDS3993", "description": "db/+", "sample_id": [ "GSM677105", "GSM677106", "GSM677107", "GSM677108", "GSM677109", "GSM677110", "GSM677111" ], "type": "genotype/variation", "id": "GDS3993_3" }, { "dataset_id": "GDS3993", "description": "db/db", "sample_id": [ "GSM677112", "GSM677113", "GSM677114", "GSM677115", "GSM677116", "GSM677117" ], "type": "genotype/variation", "id": "GDS3993_4" } ], "taxid": "10090", "genes": 16395, "aggregation_function": "mean", "name": "GDS3993", "version": 1.0, "instances": "13", "variables": 16398, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3993.tab", "compression": "gz" } ], [ [ "GDS3995.tab" ], { "title": "Developing testis and ovary", "description": "Analysis of germ cells, supporting cells, interstitial cells (including steroidogenic precursors), and endothelial cells in the developing gonads at 11.5, 12.5, and 13.5 dpc. Results provide insight into molecular mechanisms underlying the adoption of testis or ovary fate by the developing gonad.", "type": "Expression profiling by array", "pubmed_id": "22438826", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "91", "value_type": "transformed count", "reference_series": "GSE27715", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS3995", "description": "female", "sample_id": [ "GSM686196", "GSM686197", "GSM686198", "GSM686202", "GSM686203", "GSM686204", "GSM686208", "GSM686209", "GSM686210", "GSM686214", "GSM686215", "GSM686216", "GSM686220", "GSM686221", "GSM686222", "GSM686226", "GSM686227", "GSM686228", "GSM686232", "GSM686233", "GSM686234", "GSM686238", "GSM686239", "GSM686240", "GSM686244", "GSM686245", "GSM686246", "GSM686250", "GSM686251", "GSM686252", "GSM686256", "GSM686257", "GSM686258", "GSM686262", "GSM686263", "GSM686264", "GSM686268", "GSM686269", "GSM686270", "GSM686274", "GSM686275", "GSM686276", "GSM686280", "GSM686281", "GSM686282" ], "type": "gender", "id": "GDS3995_1" }, { "dataset_id": "GDS3995", "description": "male", "sample_id": [ "GSM686199", "GSM686200", "GSM686201", "GSM686205", "GSM686206", "GSM686207", "GSM686211", "GSM686212", "GSM686213", "GSM686217", "GSM686218", "GSM686219", "GSM686223", "GSM686224", "GSM686225", "GSM686229", "GSM686230", "GSM686231", "GSM686235", "GSM686236", "GSM686237", "GSM686241", "GSM686242", "GSM686243", "GSM686247", "GSM686248", "GSM686249", "GSM686253", "GSM686254", "GSM686255", "GSM686259", "GSM686260", "GSM686261", "GSM686265", "GSM686266", "GSM686267", "GSM686271", "GSM686272", "GSM686273", "GSM686277", "GSM686278", "GSM686279", "GSM686283", "GSM686284", "GSM686285" ], "type": "gender", "id": "GDS3995_2" }, { "dataset_id": "GDS3995", "description": "male and female", "sample_id": [ "GSM686286" ], "type": "gender", "id": "GDS3995_3" }, { "dataset_id": "GDS3995", "description": "11.5 dpc", "sample_id": [ "GSM686196", "GSM686197", "GSM686198", "GSM686202", "GSM686203", "GSM686204", "GSM686208", "GSM686209", "GSM686210", "GSM686214", "GSM686215", "GSM686216", "GSM686220", "GSM686221", "GSM686222", "GSM686199", "GSM686200", "GSM686201", "GSM686205", "GSM686206", "GSM686207", "GSM686211", "GSM686212", "GSM686213", "GSM686217", "GSM686218", "GSM686219", "GSM686223", "GSM686224", "GSM686225" ], "type": "development stage", "id": "GDS3995_4" }, { "dataset_id": "GDS3995", "description": "12.5 dpc", "sample_id": [ "GSM686226", "GSM686227", "GSM686228", "GSM686232", "GSM686233", "GSM686234", "GSM686238", "GSM686239", "GSM686240", "GSM686244", "GSM686245", "GSM686246", "GSM686250", "GSM686251", "GSM686252", "GSM686229", "GSM686230", "GSM686231", "GSM686235", "GSM686236", "GSM686237", "GSM686241", "GSM686242", "GSM686243", "GSM686247", "GSM686248", "GSM686249", "GSM686253", "GSM686254", "GSM686255" ], "type": "development stage", "id": "GDS3995_5" }, { "dataset_id": "GDS3995", "description": "13.5 dpc", "sample_id": [ "GSM686256", "GSM686257", "GSM686258", "GSM686262", "GSM686263", "GSM686264", "GSM686268", "GSM686269", "GSM686270", "GSM686274", "GSM686275", "GSM686276", "GSM686280", "GSM686281", "GSM686282", "GSM686259", "GSM686260", "GSM686261", "GSM686265", "GSM686266", "GSM686267", "GSM686271", "GSM686272", "GSM686273", "GSM686277", "GSM686278", "GSM686279", "GSM686283", "GSM686284", "GSM686285" ], "type": "development stage", "id": "GDS3995_6" }, { "dataset_id": "GDS3995", "description": "P0", "sample_id": [ "GSM686286" ], "type": "development stage", "id": "GDS3995_7" }, { "dataset_id": "GDS3995", "description": "developing gonad", "sample_id": [ "GSM686202", "GSM686203", "GSM686204", "GSM686208", "GSM686209", "GSM686210", "GSM686214", "GSM686215", "GSM686216", "GSM686220", "GSM686221", "GSM686222", "GSM686205", "GSM686206", "GSM686207", "GSM686211", "GSM686212", "GSM686213", "GSM686217", "GSM686218", "GSM686219", "GSM686223", "GSM686224", "GSM686225", "GSM686226", "GSM686227", "GSM686228", "GSM686232", "GSM686233", "GSM686234", "GSM686238", "GSM686239", "GSM686240", "GSM686244", "GSM686245", "GSM686246", "GSM686250", "GSM686251", "GSM686252", "GSM686229", "GSM686230", "GSM686231", "GSM686235", "GSM686236", "GSM686237", "GSM686241", "GSM686242", "GSM686243", "GSM686247", "GSM686248", "GSM686249", "GSM686253", "GSM686254", "GSM686255", "GSM686256", "GSM686257", "GSM686258", "GSM686262", "GSM686263", "GSM686264", "GSM686268", "GSM686269", "GSM686270", "GSM686274", "GSM686275", "GSM686276", "GSM686280", "GSM686281", "GSM686282", "GSM686259", "GSM686260", "GSM686261", "GSM686265", "GSM686266", "GSM686267", "GSM686271", "GSM686272", "GSM686273", "GSM686277", "GSM686278", "GSM686279", "GSM686283", "GSM686284", "GSM686285" ], "type": "tissue", "id": "GDS3995_8" }, { "dataset_id": "GDS3995", "description": "developing gonad and mesonephros", "sample_id": [ "GSM686196", "GSM686197", "GSM686198", "GSM686199", "GSM686200", "GSM686201" ], "type": "tissue", "id": "GDS3995_9" }, { "dataset_id": "GDS3995", "description": "whole embryo", "sample_id": [ "GSM686286" ], "type": "tissue", "id": "GDS3995_10" }, { "dataset_id": "GDS3995", "description": "endothelial cells", "sample_id": [ "GSM686226", "GSM686227", "GSM686228", "GSM686229", "GSM686230", "GSM686231", "GSM686256", "GSM686257", "GSM686258", "GSM686259", "GSM686260", "GSM686261", "GSM686196", "GSM686197", "GSM686198", "GSM686199", "GSM686200", "GSM686201" ], "type": "cell type", "id": "GDS3995_11" }, { "dataset_id": "GDS3995", "description": "germ cells", "sample_id": [ "GSM686238", "GSM686239", "GSM686240", "GSM686241", "GSM686242", "GSM686243", "GSM686271", "GSM686272", "GSM686273" ], "type": "cell type", "id": "GDS3995_12" }, { "dataset_id": "GDS3995", "description": "interstitial cell subset and fetal Leydig cells", "sample_id": [ "GSM686235", "GSM686236", "GSM686237", "GSM686265", "GSM686266", "GSM686267" ], "type": "cell type", "id": "GDS3995_13" }, { "dataset_id": "GDS3995", "description": "interstitial cells", "sample_id": [ "GSM686247", "GSM686248", "GSM686249", "GSM686277", "GSM686278", "GSM686279" ], "type": "cell type", "id": "GDS3995_14" }, { "dataset_id": "GDS3995", "description": "meiotic germ cells", "sample_id": [ "GSM686268", "GSM686269", "GSM686270" ], "type": "cell type", "id": "GDS3995_15" }, { "dataset_id": "GDS3995", "description": "mesenchymal cells", "sample_id": [ "GSM686214", "GSM686215", "GSM686216", "GSM686217", "GSM686218", "GSM686219" ], "type": "cell type", "id": "GDS3995_16" }, { "dataset_id": "GDS3995", "description": "primordial germ cell", "sample_id": [ "GSM686208", "GSM686209", "GSM686210", "GSM686211", "GSM686212", "GSM686213" ], "type": "cell type", "id": "GDS3995_17" }, { "dataset_id": "GDS3995", "description": "Sertoli cells", "sample_id": [ "GSM686253", "GSM686254", "GSM686255", "GSM686283", "GSM686284", "GSM686285" ], "type": "cell type", "id": "GDS3995_18" }, { "dataset_id": "GDS3995", "description": "supporting cell precursors (follicle cells/pre-Granulosa cells)", "sample_id": [ "GSM686220", "GSM686221", "GSM686222", "GSM686250", "GSM686251", "GSM686252", "GSM686280", "GSM686281", "GSM686282" ], "type": "cell type", "id": "GDS3995_19" }, { "dataset_id": "GDS3995", "description": "supporting cell precursors (pre-Sertoli)", "sample_id": [ "GSM686223", "GSM686224", "GSM686225" ], "type": "cell type", "id": "GDS3995_20" }, { "dataset_id": "GDS3995", "description": "vascular associated mesenchymal cells", "sample_id": [ "GSM686202", "GSM686203", "GSM686204", "GSM686205", "GSM686206", "GSM686207" ], "type": "cell type", "id": "GDS3995_21" }, { "dataset_id": "GDS3995", "description": "vascular associated mesenchymal stromal cells", "sample_id": [ "GSM686232", "GSM686233", "GSM686234", "GSM686244", "GSM686245", "GSM686246", "GSM686262", "GSM686263", "GSM686264", "GSM686274", "GSM686275", "GSM686276" ], "type": "cell type", "id": "GDS3995_22" }, { "dataset_id": "GDS3995", "description": "all cell types", "sample_id": [ "GSM686286" ], "type": "cell type", "id": "GDS3995_23" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3995", "version": 1.0, "instances": "91", "variables": 25475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3995.tab", "compression": "gz" } ], [ [ "GDS3996.tab" ], { "title": "Transcription factor Regulatory factor X 6 knockdown effect on tadpole anterior gut: time course", "description": "Transcription factor Regulatory factor X 6 knockdown effect on tadpole anterior gut: time course Summary: Analysis of tadpole gut at various developmental stages (NF30, NF40, NF44), following morpholino-induced knockdown of rfx6 in embryos. Rfx6 mutations are associated with neonatal diabetes and ot", "type": "Expression profiling by array", "pubmed_id": "21215266", "platform": "GPL10756", "platform_organism": "Xenopus laevis", "platform_technology_type": "in situ oligonucleotide", "feature_count": "32635", "sample_organism": "Xenopus laevis", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE23642", "order": "none", "update_date": "May 30 2012", "subsets": [ { "dataset_id": "GDS3996", "description": "Rfx6 knockdown morpholino (MO1)", "sample_id": [ "GSM579996", "GSM579997", "GSM579998", "GSM579990", "GSM579991", "GSM579992", "GSM579984", "GSM579985", "GSM579986" ], "type": "protocol", "id": "GDS3996_1" }, { "dataset_id": "GDS3996", "description": "Control morpholino (MM)", "sample_id": [ "GSM579993", "GSM579994", "GSM579995", "GSM579987", "GSM579988", "GSM579989", "GSM579981", "GSM579982", "GSM579983" ], "type": "protocol", "id": "GDS3996_2" }, { "dataset_id": "GDS3996", "description": "NF30", "sample_id": [ "GSM579984", "GSM579985", "GSM579986", "GSM579981", "GSM579982", "GSM579983" ], "type": "development stage", "id": "GDS3996_3" }, { "dataset_id": "GDS3996", "description": "NF40", "sample_id": [ "GSM579987", "GSM579988", "GSM579989", "GSM579990", "GSM579991", "GSM579992" ], "type": "development stage", "id": "GDS3996_4" }, { "dataset_id": "GDS3996", "description": "NF44", "sample_id": [ "GSM579993", "GSM579994", "GSM579995", "GSM579996", "GSM579997", "GSM579998" ], "type": "development stage", "id": "GDS3996_5" } ], "taxid": "8355", "genes": 26914, "aggregation_function": "mean", "name": "GDS3996", "version": 1.0, "instances": "18", "variables": 26917, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3996.tab", "compression": "gz" } ], [ [ "GDS3997.tab" ], { "title": "Various bone marrow hematopoietic cell fractions", "description": "Analysis of BM hematopoietic cell fractions including CD34-KSL hematopoietic stem cells. HSCs are primitive cells capable of both self-renewal and differentiating into all of the mature blood cell lineages. Results provide insight into molecular mechanisms underlying maintenance of HSC self-renewal.", "type": "Expression profiling by array", "pubmed_id": "21540074", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE27787", "order": "none", "update_date": "Feb 02 2012", "subsets": [ { "dataset_id": "GDS3997", "description": "CD34(-)KSL hematopoietic stem cells", "sample_id": [ "GSM686636", "GSM686637" ], "type": "cell type", "id": "GDS3997_1" }, { "dataset_id": "GDS3997", "description": "CD34(+)KSL multipotent progenitors", "sample_id": [ "GSM686638", "GSM686639" ], "type": "cell type", "id": "GDS3997_2" }, { "dataset_id": "GDS3997", "description": "KSL cells", "sample_id": [ "GSM686640", "GSM686641" ], "type": "cell type", "id": "GDS3997_3" }, { "dataset_id": "GDS3997", "description": "Lineage marker(-) cells", "sample_id": [ "GSM686642", "GSM686643" ], "type": "cell type", "id": "GDS3997_4" }, { "dataset_id": "GDS3997", "description": "B220(+) B lymphocytes", "sample_id": [ "GSM686644", "GSM686645" ], "type": "cell type", "id": "GDS3997_5" }, { "dataset_id": "GDS3997", "description": "CD4(+) T lymphocytes", "sample_id": [ "GSM686646", "GSM686647" ], "type": "cell type", "id": "GDS3997_6" }, { "dataset_id": "GDS3997", "description": "CD8(+) T lymphocytes", "sample_id": [ "GSM686648", "GSM686649" ], "type": "cell type", "id": "GDS3997_7" }, { "dataset_id": "GDS3997", "description": "NK1.1+ NK cells", "sample_id": [ "GSM686650", "GSM686651" ], "type": "cell type", "id": "GDS3997_8" }, { "dataset_id": "GDS3997", "description": "CD3\u03b5(+)NK1.1(+) NKT cells", "sample_id": [ "GSM686652", "GSM686653" ], "type": "cell type", "id": "GDS3997_9" }, { "dataset_id": "GDS3997", "description": "Ter119(+) erythroblasts", "sample_id": [ "GSM686654", "GSM686655" ], "type": "cell type", "id": "GDS3997_10" }, { "dataset_id": "GDS3997", "description": "Gr-1(+) neutrophils", "sample_id": [ "GSM686656", "GSM686657" ], "type": "cell type", "id": "GDS3997_11" }, { "dataset_id": "GDS3997", "description": "Mac-1(+) monocytes/macrophage", "sample_id": [ "GSM686658", "GSM686659" ], "type": "cell type", "id": "GDS3997_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS3997", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3997.tab", "compression": "gz" } ], [ [ "GDS3998.tab" ], { "title": "Organophosphorus compound VX effect on hepatocytes: dose response", "description": "Analysis of hNHEPS hepatocytes exposed to sublethal concentrations (up to 10\u03bcM) of the highly toxic organophosphorus (OP) compound VX (O-ethyl S-[2-(diisopropylamino)ethyl] methylphosphonothiolate). Results provide insight into molecular mechanisms underlying OP-induced hepatotoxicity.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE33606", "order": "none", "update_date": "Feb 02 2012", "subsets": [ { "dataset_id": "GDS3998", "description": "untreated", "sample_id": [ "GSM830925", "GSM830926", "GSM830927", "GSM830928", "GSM830929", "GSM830930", "GSM830931" ], "type": "agent", "id": "GDS3998_1" }, { "dataset_id": "GDS3998", "description": "VX", "sample_id": [ "GSM830932", "GSM830933", "GSM830934", "GSM830935", "GSM830936", "GSM830937", "GSM830938", "GSM830939" ], "type": "agent", "id": "GDS3998_2" }, { "dataset_id": "GDS3998", "description": "control", "sample_id": [ "GSM830925", "GSM830926", "GSM830927", "GSM830928", "GSM830929", "GSM830930", "GSM830931" ], "type": "dose", "id": "GDS3998_3" }, { "dataset_id": "GDS3998", "description": "0.1 \u03bcM", "sample_id": [ "GSM830932", "GSM830933", "GSM830934", "GSM830935" ], "type": "dose", "id": "GDS3998_4" }, { "dataset_id": "GDS3998", "description": "10 \u03bcM", "sample_id": [ "GSM830936", "GSM830937", "GSM830938", "GSM830939" ], "type": "dose", "id": "GDS3998_5" }, { "dataset_id": "GDS3998", "description": "0 hrs", "sample_id": [ "GSM830925", "GSM830926", "GSM830927", "GSM830928" ], "type": "time", "id": "GDS3998_6" }, { "dataset_id": "GDS3998", "description": "6 hrs", "sample_id": [ "GSM830929", "GSM830930", "GSM830931", "GSM830932", "GSM830933", "GSM830934", "GSM830935", "GSM830936", "GSM830937", "GSM830938", "GSM830939" ], "type": "time", "id": "GDS3998_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS3998", "version": 1.0, "instances": "15", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3998.tab", "compression": "gz" } ], [ [ "GDS3999.tab" ], { "title": "Regulatory, pathogenic and control CD4+ T cells", "description": "Analysis of regulatory, pathogenic, and functionally neutral control T cells. Autoantigen-specific regulatory T cells (Tregs) play important roles in regulating immune responses and enhancing inhibition of type 1 diabetes. Results provide insight into molecular mechanisms modulating Treg function.", "type": "Expression profiling by array", "pubmed_id": "21245333", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE26456", "order": "none", "update_date": "May 30 2012", "subsets": [ { "dataset_id": "GDS3999", "description": "BDC", "sample_id": [ "GSM649352", "GSM649353" ], "type": "strain", "id": "GDS3999_1" }, { "dataset_id": "GDS3999", "description": "NOD", "sample_id": [ "GSM649354", "GSM649355", "GSM649356", "GSM649357" ], "type": "strain", "id": "GDS3999_2" }, { "dataset_id": "GDS3999", "description": "NOR", "sample_id": [ "GSM649358", "GSM649359" ], "type": "strain", "id": "GDS3999_3" }, { "dataset_id": "GDS3999", "description": "pathogenic T cells", "sample_id": [ "GSM649352", "GSM649353" ], "type": "cell type", "id": "GDS3999_4" }, { "dataset_id": "GDS3999", "description": "neutral control T cells", "sample_id": [ "GSM649354", "GSM649355" ], "type": "cell type", "id": "GDS3999_5" }, { "dataset_id": "GDS3999", "description": "regulatory T cells", "sample_id": [ "GSM649356", "GSM649357", "GSM649358", "GSM649359" ], "type": "cell type", "id": "GDS3999_6" }, { "dataset_id": "GDS3999", "description": "BDC", "sample_id": [ "GSM649352", "GSM649353" ], "type": "cell line", "id": "GDS3999_7" }, { "dataset_id": "GDS3999", "description": "N79", "sample_id": [ "GSM649354", "GSM649355" ], "type": "cell line", "id": "GDS3999_8" }, { "dataset_id": "GDS3999", "description": "N206", "sample_id": [ "GSM649356", "GSM649357" ], "type": "cell line", "id": "GDS3999_9" }, { "dataset_id": "GDS3999", "description": "NR206", "sample_id": [ "GSM649358", "GSM649359" ], "type": "cell line", "id": "GDS3999_10" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS3999", "version": 1.0, "instances": "8", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS3999.tab", "compression": "gz" } ], [ [ "GDS40.tab" ], { "title": "Cardiac development, maturation and aging", "description": "Benchmark gene expression profile of heart ventricle at various ages to monitor changes in cardiac development. Examined embryonic stages through adolescence and adulthood.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE75", "order": "none", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS40", "description": "embryo day 12.5", "sample_id": [ "GSM2189", "GSM2190", "GSM2191" ], "type": "development stage", "id": "GDS40_1" }, { "dataset_id": "GDS40", "description": "neonatal day 1", "sample_id": [ "GSM2192", "GSM2193", "GSM2194" ], "type": "development stage", "id": "GDS40_2" }, { "dataset_id": "GDS40", "description": "1 week", "sample_id": [ "GSM2088", "GSM2178", "GSM2179" ], "type": "development stage", "id": "GDS40_3" }, { "dataset_id": "GDS40", "description": "4 week", "sample_id": [ "GSM2183", "GSM2184", "GSM2185" ], "type": "development stage", "id": "GDS40_4" }, { "dataset_id": "GDS40", "description": "3 month", "sample_id": [ "GSM2334", "GSM2335", "GSM2336" ], "type": "development stage", "id": "GDS40_5" }, { "dataset_id": "GDS40", "description": "5 month", "sample_id": [ "GSM2186", "GSM2187", "GSM2188" ], "type": "development stage", "id": "GDS40_6" }, { "dataset_id": "GDS40", "description": "12 month", "sample_id": [ "GSM2180", "GSM2181", "GSM2182", "GSM2337", "GSM2338", "GSM2339" ], "type": "development stage", "id": "GDS40_7" }, { "dataset_id": "GDS40", "description": "male", "sample_id": [ "GSM2180", "GSM2181", "GSM2182", "GSM2186", "GSM2187", "GSM2188" ], "type": "gender", "id": "GDS40_8" }, { "dataset_id": "GDS40", "description": "female", "sample_id": [ "GSM2334", "GSM2335", "GSM2336", "GSM2337", "GSM2338", "GSM2339" ], "type": "gender", "id": "GDS40_9" }, { "dataset_id": "GDS40", "description": "mix", "sample_id": [ "GSM2189", "GSM2190", "GSM2191", "GSM2192", "GSM2193", "GSM2194", "GSM2088", "GSM2178", "GSM2179", "GSM2183", "GSM2184", "GSM2185" ], "type": "gender", "id": "GDS40_10" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS40", "version": 1.0, "instances": "24", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS40.tab", "compression": "gz" } ], [ [ "GDS400.tab" ], { "title": "DNA damage and UV radiation", "description": "Temporal analysis of differences in WS1 human skin fibroblast gene expression response to low (10 J/m2; induces transient cellular replicative arrest) or high (50 J/m2; induces apoptosis) doses of short wavelength UV radiation (UVC; 254 nm).", "type": "Expression profiling by array", "pubmed_id": "12907719", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE713", "order": "none", "update_date": "Oct 08 2003", "subsets": [ { "dataset_id": "GDS400", "description": "control", "sample_id": [ "GSM6798", "GSM6799", "GSM6800", "GSM6801" ], "type": "protocol", "id": "GDS400_1" }, { "dataset_id": "GDS400", "description": "low dose UV", "sample_id": [ "GSM6810", "GSM6811", "GSM6812", "GSM6813", "GSM6814", "GSM6815", "GSM6816", "GSM6817" ], "type": "protocol", "id": "GDS400_2" }, { "dataset_id": "GDS400", "description": "high dose UV", "sample_id": [ "GSM6802", "GSM6803", "GSM6804", "GSM6805", "GSM6806", "GSM6807", "GSM6808", "GSM6809" ], "type": "protocol", "id": "GDS400_3" }, { "dataset_id": "GDS400", "description": "6 hours", "sample_id": [ "GSM6798", "GSM6799", "GSM6802", "GSM6803", "GSM6810", "GSM6811" ], "type": "time", "id": "GDS400_4" }, { "dataset_id": "GDS400", "description": "12 hours", "sample_id": [ "GSM6804", "GSM6805", "GSM6812", "GSM6813" ], "type": "time", "id": "GDS400_5" }, { "dataset_id": "GDS400", "description": "18 hours", "sample_id": [ "GSM6806", "GSM6807", "GSM6814", "GSM6815" ], "type": "time", "id": "GDS400_6" }, { "dataset_id": "GDS400", "description": "24 hours", "sample_id": [ "GSM6800", "GSM6801", "GSM6808", "GSM6809", "GSM6816", "GSM6817" ], "type": "time", "id": "GDS400_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS400", "version": 1.0, "instances": "20", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS400.tab", "compression": "gz" } ], [ [ "GDS4000.tab" ], { "title": "Type 2 diabetic (TALLYHO/JngJ x C57BL6) F2 males: liver, pancreas, muscle and adipose tissue", "description": "Analysis of various tissues from TH x B6 F2 males with high triglycerides. TH mice are a polygenic model for type 2 diabetes (T2D) characterized by obesity, insulin resistance, and hyperlipidemia. Results provide insight into quantitative trait loci (QTLs) affecting hypertriglyceridemia in TH mice.", "type": "Expression profiling by array", "pubmed_id": "21167066", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "transformed count", "reference_series": "GSE24637", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4000", "description": "adipose", "sample_id": [ "GSM607620", "GSM607621", "GSM607622", "GSM607623", "GSM607624", "GSM607625", "GSM607626", "GSM607627", "GSM607628", "GSM607629", "GSM607630", "GSM607631", "GSM607632", "GSM607633", "GSM607634", "GSM607635" ], "type": "tissue", "id": "GDS4000_1" }, { "dataset_id": "GDS4000", "description": "liver", "sample_id": [ "GSM607572", "GSM607573", "GSM607574", "GSM607575", "GSM607576", "GSM607577", "GSM607578", "GSM607579", "GSM607580", "GSM607581", "GSM607582", "GSM607583", "GSM607584", "GSM607585", "GSM607586", "GSM607587" ], "type": "tissue", "id": "GDS4000_2" }, { "dataset_id": "GDS4000", "description": "muscle", "sample_id": [ "GSM607604", "GSM607605", "GSM607606", "GSM607607", "GSM607608", "GSM607609", "GSM607610", "GSM607611", "GSM607612", "GSM607613", "GSM607614", "GSM607615", "GSM607616", "GSM607617", "GSM607618", "GSM607619" ], "type": "tissue", "id": "GDS4000_3" }, { "dataset_id": "GDS4000", "description": "pancreas", "sample_id": [ "GSM607588", "GSM607589", "GSM607590", "GSM607591", "GSM607592", "GSM607593", "GSM607594", "GSM607595", "GSM607596", "GSM607597", "GSM607598", "GSM607599", "GSM607600", "GSM607601", "GSM607602", "GSM607603" ], "type": "tissue", "id": "GDS4000_4" }, { "dataset_id": "GDS4000", "description": "high triglyceride", "sample_id": [ "GSM607620", "GSM607621", "GSM607622", "GSM607623", "GSM607624", "GSM607625", "GSM607626", "GSM607627", "GSM607572", "GSM607573", "GSM607574", "GSM607575", "GSM607576", "GSM607577", "GSM607578", "GSM607579", "GSM607604", "GSM607605", "GSM607606", "GSM607607", "GSM607608", "GSM607609", "GSM607610", "GSM607611", "GSM607588", "GSM607589", "GSM607590", "GSM607591", "GSM607592", "GSM607593", "GSM607594", "GSM607595" ], "type": "disease state", "id": "GDS4000_5" }, { "dataset_id": "GDS4000", "description": "low triglyceride", "sample_id": [ "GSM607628", "GSM607629", "GSM607630", "GSM607631", "GSM607632", "GSM607633", "GSM607634", "GSM607635", "GSM607580", "GSM607581", "GSM607582", "GSM607583", "GSM607584", "GSM607585", "GSM607586", "GSM607587", "GSM607612", "GSM607613", "GSM607614", "GSM607615", "GSM607616", "GSM607617", "GSM607618", "GSM607619", "GSM607596", "GSM607597", "GSM607598", "GSM607599", "GSM607600", "GSM607601", "GSM607602", "GSM607603" ], "type": "disease state", "id": "GDS4000_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4000", "version": 1.0, "instances": "64", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4000.tab", "compression": "gz" } ], [ [ "GDS4001.tab" ], { "title": "High and Low Anxiety: multiple brain regions", "description": "Analysis of seven brain regions closely connected to the emotion-regulating parts of the limbic system, isolated by micropunching from CD-1 males selectively bred for high (HAB) or low (LAB) anxiety-related behavior. Results provide insight into the molecular mechanisms underlying anxiety.", "type": "Expression profiling by array", "pubmed_id": "21897848", "platform": "GPL7467", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "24192", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "70", "value_type": "log2 ratio", "reference_series": "GSE29015", "order": "none", "update_date": "Feb 06 2012", "subsets": [ { "dataset_id": "GDS4001", "description": "hypothalamic paraventricular nucleus", "sample_id": [ "GSM718523", "GSM718524", "GSM718525", "GSM718526", "GSM718527", "GSM718528", "GSM718529", "GSM718530", "GSM718531", "GSM718532" ], "type": "tissue", "id": "GDS4001_1" }, { "dataset_id": "GDS4001", "description": "basolateral amygdala", "sample_id": [ "GSM718533", "GSM718534", "GSM718535", "GSM718536", "GSM718537", "GSM718538", "GSM718539", "GSM718540", "GSM718541", "GSM718542" ], "type": "tissue", "id": "GDS4001_2" }, { "dataset_id": "GDS4001", "description": "central amygdala", "sample_id": [ "GSM718543", "GSM718544", "GSM718545", "GSM718546", "GSM718547", "GSM718548", "GSM718549", "GSM718550", "GSM718551", "GSM718552" ], "type": "tissue", "id": "GDS4001_3" }, { "dataset_id": "GDS4001", "description": "nucleus accumbens", "sample_id": [ "GSM718553", "GSM718554", "GSM718555", "GSM718556", "GSM718557", "GSM718558", "GSM718559", "GSM718560", "GSM718561", "GSM718562" ], "type": "tissue", "id": "GDS4001_4" }, { "dataset_id": "GDS4001", "description": "medial amygdala", "sample_id": [ "GSM718563", "GSM718564", "GSM718565", "GSM718566", "GSM718567", "GSM718568", "GSM718569", "GSM718570", "GSM718571", "GSM718572" ], "type": "tissue", "id": "GDS4001_5" }, { "dataset_id": "GDS4001", "description": "cingulate cortex", "sample_id": [ "GSM718573", "GSM718574", "GSM718575", "GSM718576", "GSM718577", "GSM718578", "GSM718579", "GSM718580", "GSM718581", "GSM718582" ], "type": "tissue", "id": "GDS4001_6" }, { "dataset_id": "GDS4001", "description": "supraoptic nucleus", "sample_id": [ "GSM718583", "GSM718584", "GSM718585", "GSM718586", "GSM718587", "GSM718588", "GSM718589", "GSM718590", "GSM718591", "GSM718592" ], "type": "tissue", "id": "GDS4001_7" } ], "taxid": "10090", "genes": 18699, "aggregation_function": "mean", "name": "GDS4001", "version": 1.0, "instances": "70", "variables": 18701, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4001.tab", "compression": "gz" } ], [ [ "GDS4002.tab" ], { "title": "High, Normal, and Low Anxiety: multiple brain regions", "description": "Analysis of five brain regions closely connected to the emotion-regulating parts of the limbic system, isolated by LCM from CD-1 males selectively bred for high (HAB), normal (NAB), or low (LAB) anxiety-related behavior. Results provide insight into the molecular mechanisms underlying anxiety.", "type": "Expression profiling by array", "pubmed_id": "21897848", "platform": "GPL6481", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46643", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "75", "value_type": "count", "reference_series": "GSE29015", "order": "none", "update_date": "Feb 06 2012", "subsets": [ { "dataset_id": "GDS4002", "description": "low anxiety", "sample_id": [ "GSM718875", "GSM718881", "GSM718883", "GSM718879", "GSM718874", "GSM718844", "GSM718847", "GSM718851", "GSM718848", "GSM718859", "GSM718826", "GSM718829", "GSM718830", "GSM718833", "GSM718837", "GSM718839", "GSM718897", "GSM718890", "GSM718900", "GSM718868", "GSM718870", "GSM718855", "GSM718872", "GSM718864" ], "type": "disease state", "id": "GDS4002_1" }, { "dataset_id": "GDS4002", "description": "normal anxiety", "sample_id": [ "GSM718886", "GSM718887", "GSM718888", "GSM718884", "GSM718885", "GSM718889", "GSM718843", "GSM718845", "GSM718849", "GSM718854", "GSM718852", "GSM718841", "GSM718825", "GSM718827", "GSM718831", "GSM718835", "GSM718836", "GSM718838", "GSM718895", "GSM718898", "GSM718892", "GSM718863", "GSM718871", "GSM718860", "GSM718858", "GSM718866" ], "type": "disease state", "id": "GDS4002_2" }, { "dataset_id": "GDS4002", "description": "high anxiety", "sample_id": [ "GSM718877", "GSM718882", "GSM718878", "GSM718876", "GSM718880", "GSM718842", "GSM718846", "GSM718857", "GSM718856", "GSM718853", "GSM718850", "GSM718824", "GSM718828", "GSM718832", "GSM718834", "GSM718840", "GSM718894", "GSM718891", "GSM718899", "GSM718867", "GSM718861", "GSM718862", "GSM718865", "GSM718873", "GSM718869" ], "type": "disease state", "id": "GDS4002_3" }, { "dataset_id": "GDS4002", "description": "basolateral amygdala", "sample_id": [ "GSM718889", "GSM718888", "GSM718887", "GSM718886", "GSM718885", "GSM718884", "GSM718883", "GSM718882", "GSM718881", "GSM718880", "GSM718879", "GSM718878", "GSM718877", "GSM718876", "GSM718875", "GSM718874" ], "type": "tissue", "id": "GDS4002_4" }, { "dataset_id": "GDS4002", "description": "central amygdala", "sample_id": [ "GSM718842", "GSM718846", "GSM718857", "GSM718856", "GSM718853", "GSM718850", "GSM718844", "GSM718847", "GSM718851", "GSM718848", "GSM718859", "GSM718843", "GSM718845", "GSM718849", "GSM718854", "GSM718852", "GSM718841" ], "type": "tissue", "id": "GDS4002_5" }, { "dataset_id": "GDS4002", "description": "cingulate cortex", "sample_id": [ "GSM718824", "GSM718828", "GSM718832", "GSM718834", "GSM718840", "GSM718826", "GSM718829", "GSM718830", "GSM718833", "GSM718837", "GSM718839", "GSM718825", "GSM718827", "GSM718831", "GSM718835", "GSM718836", "GSM718838" ], "type": "tissue", "id": "GDS4002_6" }, { "dataset_id": "GDS4002", "description": "dentate gyrus", "sample_id": [ "GSM718894", "GSM718891", "GSM718899", "GSM718897", "GSM718890", "GSM718900", "GSM718895", "GSM718898", "GSM718892" ], "type": "tissue", "id": "GDS4002_7" }, { "dataset_id": "GDS4002", "description": "hypothalamic paraventricular nucleus", "sample_id": [ "GSM718867", "GSM718861", "GSM718862", "GSM718865", "GSM718873", "GSM718869", "GSM718868", "GSM718870", "GSM718855", "GSM718872", "GSM718864", "GSM718863", "GSM718871", "GSM718860", "GSM718858", "GSM718866" ], "type": "tissue", "id": "GDS4002_8" } ], "taxid": "10090", "genes": 31595, "aggregation_function": "mean", "name": "GDS4002", "version": 1.0, "instances": "75", "variables": 31598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4002.tab", "compression": "gz" } ], [ [ "GDS4003.tab" ], { "title": "Cyclophosphamide effect on bone marrow: time course", "description": "Analysis of bone marrow (a primary lymphoid organ) from tumor-bearing animals for up to 5 days after a single chemotherapeutic treatment of cyclophosphamide (CTX). Results provide insight into the CTX-mediated effects responsible for the antitumor efficacy of chemoimmunotherapy.", "type": "Expression profiling by array", "pubmed_id": "21444678", "platform": "GPL13209", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13443", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "40", "value_type": "log2 ratio", "reference_series": "GSE27440", "order": "none", "update_date": "Feb 06 2012", "subsets": [ { "dataset_id": "GDS4003", "description": "untreated", "sample_id": [ "GSM677900", "GSM677901", "GSM677902", "GSM677903", "GSM677904", "GSM677905", "GSM677906", "GSM677907", "GSM677908", "GSM677909" ], "type": "agent", "id": "GDS4003_1" }, { "dataset_id": "GDS4003", "description": "cyclophosphamide", "sample_id": [ "GSM677910", "GSM677911", "GSM677912", "GSM677913", "GSM677914", "GSM677915", "GSM677916", "GSM677917", "GSM677918", "GSM677919", "GSM677920", "GSM677921", "GSM677922", "GSM677923", "GSM677924", "GSM677925", "GSM677926", "GSM677927", "GSM677928", "GSM677929", "GSM677930", "GSM677931", "GSM677932", "GSM677933", "GSM677934", "GSM677935", "GSM677936", "GSM677937", "GSM677938", "GSM677939" ], "type": "agent", "id": "GDS4003_2" }, { "dataset_id": "GDS4003", "description": "control", "sample_id": [ "GSM677900", "GSM677901", "GSM677902", "GSM677903", "GSM677904", "GSM677905", "GSM677906", "GSM677907", "GSM677908", "GSM677909" ], "type": "time", "id": "GDS4003_3" }, { "dataset_id": "GDS4003", "description": "1 day", "sample_id": [ "GSM677910", "GSM677911", "GSM677912", "GSM677913", "GSM677914", "GSM677915", "GSM677916", "GSM677917", "GSM677918", "GSM677919" ], "type": "time", "id": "GDS4003_4" }, { "dataset_id": "GDS4003", "description": "2 days", "sample_id": [ "GSM677920", "GSM677921", "GSM677922", "GSM677923", "GSM677924", "GSM677925", "GSM677926", "GSM677927", "GSM677928", "GSM677929" ], "type": "time", "id": "GDS4003_5" }, { "dataset_id": "GDS4003", "description": "5 days", "sample_id": [ "GSM677930", "GSM677931", "GSM677932", "GSM677933", "GSM677934", "GSM677935", "GSM677936", "GSM677937", "GSM677938", "GSM677939" ], "type": "time", "id": "GDS4003_6" } ], "taxid": "10090", "genes": 12938, "aggregation_function": "mean", "name": "GDS4003", "version": 1.0, "instances": "40", "variables": 12941, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4003.tab", "compression": "gz" } ], [ [ "GDS4004.tab" ], { "title": "Cyclophosphamide effect on peripheral blood leukocytes: time course", "description": "Analysis of peripheral blood leukocytes from tumor-bearing animals for up to 5 days after a single chemotherapeutic treatment of cyclophosphamide (CTX). Results provide insight into the CTX-mediated effects responsible for the antitumor efficacy of chemoimmunotherapy.", "type": "Expression profiling by array", "pubmed_id": "21444678", "platform": "GPL13209", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13443", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "30", "value_type": "log2 ratio", "reference_series": "GSE27440", "order": "none", "update_date": "Feb 06 2012", "subsets": [ { "dataset_id": "GDS4004", "description": "untreated", "sample_id": [ "GSM677940", "GSM677941", "GSM677942", "GSM677943", "GSM677944", "GSM677945", "GSM677946", "GSM677947" ], "type": "agent", "id": "GDS4004_1" }, { "dataset_id": "GDS4004", "description": "cyclophosphamide", "sample_id": [ "GSM677948", "GSM677949", "GSM677950", "GSM677951", "GSM677952", "GSM677953", "GSM677954", "GSM677955", "GSM677956", "GSM677957", "GSM677958", "GSM677959", "GSM677960", "GSM677961", "GSM677962", "GSM677963", "GSM677964", "GSM677965", "GSM677966", "GSM677967", "GSM677968", "GSM677969" ], "type": "agent", "id": "GDS4004_2" }, { "dataset_id": "GDS4004", "description": "control", "sample_id": [ "GSM677940", "GSM677941", "GSM677942", "GSM677943", "GSM677944", "GSM677945", "GSM677946", "GSM677947" ], "type": "time", "id": "GDS4004_3" }, { "dataset_id": "GDS4004", "description": "1 day", "sample_id": [ "GSM677948", "GSM677949", "GSM677950", "GSM677951", "GSM677952", "GSM677953", "GSM677954", "GSM677955" ], "type": "time", "id": "GDS4004_4" }, { "dataset_id": "GDS4004", "description": "2 days", "sample_id": [ "GSM677956", "GSM677957", "GSM677958", "GSM677959", "GSM677960", "GSM677961", "GSM677962", "GSM677963" ], "type": "time", "id": "GDS4004_5" }, { "dataset_id": "GDS4004", "description": "5 days", "sample_id": [ "GSM677964", "GSM677965", "GSM677966", "GSM677967", "GSM677968", "GSM677969" ], "type": "time", "id": "GDS4004_6" } ], "taxid": "10090", "genes": 12938, "aggregation_function": "mean", "name": "GDS4004", "version": 1.0, "instances": "30", "variables": 12941, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4004.tab", "compression": "gz" } ], [ [ "GDS4005.tab" ], { "title": "Cyclophosphamide effect on splenocytes: time course", "description": "Analysis of spleen (a secondary lymphoid organ) from tumor-bearing animals for up to 5 days after a single chemotherapeutic treatment of cyclophosphamide (CTX). Results provide insight into the CTX-mediated effects responsible for the antitumor efficacy of chemoimmunotherapy.", "type": "Expression profiling by array", "pubmed_id": "21444678", "platform": "GPL13209", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13443", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "38", "value_type": "log2 ratio", "reference_series": "GSE27440", "order": "none", "update_date": "Feb 06 2012", "subsets": [ { "dataset_id": "GDS4005", "description": "untreated", "sample_id": [ "GSM677970", "GSM677971", "GSM677972", "GSM677973", "GSM677974", "GSM677975", "GSM677976", "GSM677977", "GSM677978", "GSM677979" ], "type": "agent", "id": "GDS4005_1" }, { "dataset_id": "GDS4005", "description": "cyclophosphamide", "sample_id": [ "GSM677980", "GSM677981", "GSM677982", "GSM677983", "GSM677984", "GSM677985", "GSM677986", "GSM677987", "GSM677988", "GSM677989", "GSM677990", "GSM677991", "GSM677992", "GSM677993", "GSM677994", "GSM677995", "GSM677996", "GSM677997", "GSM677998", "GSM677999", "GSM678000", "GSM678001", "GSM678002", "GSM678003", "GSM678004", "GSM678005", "GSM678006", "GSM678007" ], "type": "agent", "id": "GDS4005_2" }, { "dataset_id": "GDS4005", "description": "control", "sample_id": [ "GSM677970", "GSM677971", "GSM677972", "GSM677973", "GSM677974", "GSM677975", "GSM677976", "GSM677977", "GSM677978", "GSM677979" ], "type": "time", "id": "GDS4005_3" }, { "dataset_id": "GDS4005", "description": "1 day", "sample_id": [ "GSM677980", "GSM677981", "GSM677982", "GSM677983", "GSM677984", "GSM677985", "GSM677986", "GSM677987" ], "type": "time", "id": "GDS4005_4" }, { "dataset_id": "GDS4005", "description": "2 days", "sample_id": [ "GSM677988", "GSM677989", "GSM677990", "GSM677991", "GSM677992", "GSM677993", "GSM677994", "GSM677995", "GSM677996", "GSM677997" ], "type": "time", "id": "GDS4005_5" }, { "dataset_id": "GDS4005", "description": "5 days", "sample_id": [ "GSM677998", "GSM677999", "GSM678000", "GSM678001", "GSM678002", "GSM678003", "GSM678004", "GSM678005", "GSM678006", "GSM678007" ], "type": "time", "id": "GDS4005_6" } ], "taxid": "10090", "genes": 12938, "aggregation_function": "mean", "name": "GDS4005", "version": 1.0, "instances": "38", "variables": 12941, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4005.tab", "compression": "gz" } ], [ [ "GDS4006.tab" ], { "title": "Histone deacetylase inhibitor and hypomethylating agent effect on diffuse large B-cell lymphoma cell lines", "description": "Analysis of three large B-cell lymphoma cell lines treated with the histone deacetylase inhibitor panobinostat, hypomethylating agent decitabine, or both for 48hrs. Panobinostat synergizes with decitabine in DLBCL cells. Results provide insight into the molecular basis for this synergistic effect.", "type": "Expression profiling by array", "pubmed_id": "21772049", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE27226", "order": "none", "update_date": "May 06 2013", "subsets": [ { "dataset_id": "GDS4006", "description": "DLBCL line OCI-Ly1", "sample_id": [ "GSM673047", "GSM673048", "GSM673049", "GSM673050" ], "type": "cell line", "id": "GDS4006_1" }, { "dataset_id": "GDS4006", "description": "DLBCL line OCI-Ly10", "sample_id": [ "GSM673051", "GSM673052", "GSM673053", "GSM673054" ], "type": "cell line", "id": "GDS4006_2" }, { "dataset_id": "GDS4006", "description": "DLBCL line Su-DHL6", "sample_id": [ "GSM673055", "GSM673056", "GSM673057", "GSM673058" ], "type": "cell line", "id": "GDS4006_3" }, { "dataset_id": "GDS4006", "description": "control", "sample_id": [ "GSM673047", "GSM673051", "GSM673055" ], "type": "agent", "id": "GDS4006_4" }, { "dataset_id": "GDS4006", "description": "decitabine", "sample_id": [ "GSM673048", "GSM673052", "GSM673057" ], "type": "agent", "id": "GDS4006_5" }, { "dataset_id": "GDS4006", "description": "panobinostat", "sample_id": [ "GSM673049", "GSM673053", "GSM673056" ], "type": "agent", "id": "GDS4006_6" }, { "dataset_id": "GDS4006", "description": "decitabine and panobinostat", "sample_id": [ "GSM673050", "GSM673054", "GSM673058" ], "type": "agent", "id": "GDS4006_7" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS4006", "version": 1.0, "instances": "12", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4006.tab", "compression": "gz" } ], [ [ "GDS4007.tab" ], { "title": "Myelomatous bone marrow samples after aspiration: time course", "description": "Analysis of myeloma-patient whole bone marrow (BM) aspirates after immediate RNA fixation or after delayed fixation (up to 660 min). Aspiration interrupts the natural BM interactions. Results provide insight into the molecular pathways regulated by intercellular interactions within myelomatous BM.", "type": "Expression profiling by array", "pubmed_id": "23241658", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE36036", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4007", "description": "case A", "sample_id": [ "GSM879509", "GSM879510", "GSM879511" ], "type": "individual", "id": "GDS4007_1" }, { "dataset_id": "GDS4007", "description": "case B", "sample_id": [ "GSM879512", "GSM879513", "GSM879514", "GSM879517", "GSM879518" ], "type": "individual", "id": "GDS4007_2" }, { "dataset_id": "GDS4007", "description": "case C", "sample_id": [ "GSM879519", "GSM879520" ], "type": "individual", "id": "GDS4007_3" }, { "dataset_id": "GDS4007", "description": "case D", "sample_id": [ "GSM879525", "GSM879526" ], "type": "individual", "id": "GDS4007_4" }, { "dataset_id": "GDS4007", "description": "case E", "sample_id": [ "GSM879527", "GSM879528" ], "type": "individual", "id": "GDS4007_5" }, { "dataset_id": "GDS4007", "description": "case F", "sample_id": [ "GSM879529", "GSM879530", "GSM879531" ], "type": "individual", "id": "GDS4007_6" }, { "dataset_id": "GDS4007", "description": "case G", "sample_id": [ "GSM879532", "GSM879533", "GSM879534" ], "type": "individual", "id": "GDS4007_7" }, { "dataset_id": "GDS4007", "description": "case H", "sample_id": [ "GSM879535", "GSM879536" ], "type": "individual", "id": "GDS4007_8" }, { "dataset_id": "GDS4007", "description": "case I", "sample_id": [ "GSM879537", "GSM879538" ], "type": "individual", "id": "GDS4007_9" }, { "dataset_id": "GDS4007", "description": "case J", "sample_id": [ "GSM879539", "GSM879540" ], "type": "individual", "id": "GDS4007_10" }, { "dataset_id": "GDS4007", "description": "myeloma", "sample_id": [ "GSM879509", "GSM879510", "GSM879511", "GSM879512", "GSM879513", "GSM879514", "GSM879519", "GSM879520", "GSM879525", "GSM879526", "GSM879527", "GSM879528", "GSM879529", "GSM879530", "GSM879531", "GSM879532", "GSM879533", "GSM879534", "GSM879535", "GSM879536", "GSM879537", "GSM879538", "GSM879539", "GSM879540" ], "type": "disease state", "id": "GDS4007_11" }, { "dataset_id": "GDS4007", "description": "remission", "sample_id": [ "GSM879517", "GSM879518" ], "type": "disease state", "id": "GDS4007_12" }, { "dataset_id": "GDS4007", "description": "Immediate fixation following aspiration", "sample_id": [ "GSM879509", "GSM879512", "GSM879517", "GSM879519", "GSM879525", "GSM879527", "GSM879529", "GSM879532", "GSM879535", "GSM879537", "GSM879539" ], "type": "protocol", "id": "GDS4007_13" }, { "dataset_id": "GDS4007", "description": "Delayed fixation following aspiration", "sample_id": [ "GSM879510", "GSM879511", "GSM879513", "GSM879514", "GSM879518", "GSM879520", "GSM879526", "GSM879528", "GSM879530", "GSM879531", "GSM879533", "GSM879534", "GSM879536", "GSM879538", "GSM879540" ], "type": "protocol", "id": "GDS4007_14" }, { "dataset_id": "GDS4007", "description": "0 min", "sample_id": [ "GSM879509", "GSM879512", "GSM879517", "GSM879519", "GSM879525", "GSM879527", "GSM879529", "GSM879532", "GSM879535", "GSM879537", "GSM879539" ], "type": "time", "id": "GDS4007_15" }, { "dataset_id": "GDS4007", "description": "17 min", "sample_id": [ "GSM879510" ], "type": "time", "id": "GDS4007_16" }, { "dataset_id": "GDS4007", "description": "120 min", "sample_id": [ "GSM879511", "GSM879513", "GSM879518", "GSM879526", "GSM879528", "GSM879530", "GSM879533", "GSM879536" ], "type": "time", "id": "GDS4007_17" }, { "dataset_id": "GDS4007", "description": "180 min", "sample_id": [ "GSM879538" ], "type": "time", "id": "GDS4007_18" }, { "dataset_id": "GDS4007", "description": "300 min", "sample_id": [ "GSM879520" ], "type": "time", "id": "GDS4007_19" }, { "dataset_id": "GDS4007", "description": "420 min", "sample_id": [ "GSM879531" ], "type": "time", "id": "GDS4007_20" }, { "dataset_id": "GDS4007", "description": "480 min", "sample_id": [ "GSM879534" ], "type": "time", "id": "GDS4007_21" }, { "dataset_id": "GDS4007", "description": "540 min", "sample_id": [ "GSM879514" ], "type": "time", "id": "GDS4007_22" }, { "dataset_id": "GDS4007", "description": "660 min", "sample_id": [ "GSM879540" ], "type": "time", "id": "GDS4007_23" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4007", "version": 1.0, "instances": "26", "variables": 26808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4007.tab", "compression": "gz" } ], [ [ "GDS4008.tab" ], { "title": "Myelomatous bone marrow cultures: contact versus contactless conditions", "description": "Analysis of cultured myeloma bone marrow (BM) cells fixed immediately following spread from the bottom well or after maintenance in suspension (delayed fixation for 60, 120 minutes). Results provide insight into molecular mechanisms involved in contact versus contactless growth in myeloma.", "type": "Expression profiling by array", "pubmed_id": "23241658", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE36036", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS4008", "description": "case B", "sample_id": [ "GSM879515", "GSM879516" ], "type": "individual", "id": "GDS4008_1" }, { "dataset_id": "GDS4008", "description": "case C", "sample_id": [ "GSM879521", "GSM879522" ], "type": "individual", "id": "GDS4008_2" }, { "dataset_id": "GDS4008", "description": "Immediate fixation following spread from the bottom well", "sample_id": [ "GSM879515", "GSM879521" ], "type": "protocol", "id": "GDS4008_3" }, { "dataset_id": "GDS4008", "description": "0 min", "sample_id": [ "GSM879515", "GSM879521" ], "type": "time", "id": "GDS4008_4" }, { "dataset_id": "GDS4008", "description": "Delayed fixation following spread from the bottom well", "sample_id": [ "GSM879516", "GSM879522" ], "type": "protocol", "id": "GDS4008_5" }, { "dataset_id": "GDS4008", "description": "60 min", "sample_id": [ "GSM879516" ], "type": "time", "id": "GDS4008_6" }, { "dataset_id": "GDS4008", "description": "120 min", "sample_id": [ "GSM879522" ], "type": "time", "id": "GDS4008_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4008", "version": 1.0, "instances": "4", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4008.tab", "compression": "gz" } ], [ [ "GDS4009.tab" ], { "title": "Half-udder model response to milking frequency and timing of mammary biopsies", "description": "Analysis of mammary biopsies from lactating cows assigned to unilateral frequent milking (2X daily of left udder half, 4X daily of right udder half). Biopsies obtained at 5 days in milk, immediately after the 4X udder half had been milked, or 2.5 h after both udder halves had last been milked.", "type": "Expression profiling by array", "pubmed_id": "22028429", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE27380", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4009", "description": "Cow1", "sample_id": [ "GSM677069", "GSM677070" ], "type": "specimen", "id": "GDS4009_1" }, { "dataset_id": "GDS4009", "description": "Cow2", "sample_id": [ "GSM677071", "GSM677072" ], "type": "specimen", "id": "GDS4009_2" }, { "dataset_id": "GDS4009", "description": "Cow3", "sample_id": [ "GSM677073", "GSM677074" ], "type": "specimen", "id": "GDS4009_3" }, { "dataset_id": "GDS4009", "description": "Cow4", "sample_id": [ "GSM677075", "GSM677076" ], "type": "specimen", "id": "GDS4009_4" }, { "dataset_id": "GDS4009", "description": "Cow5", "sample_id": [ "GSM677077", "GSM677078" ], "type": "specimen", "id": "GDS4009_5" }, { "dataset_id": "GDS4009", "description": "Cow6", "sample_id": [ "GSM677079", "GSM677080" ], "type": "specimen", "id": "GDS4009_6" }, { "dataset_id": "GDS4009", "description": "Cow7", "sample_id": [ "GSM677081", "GSM677082" ], "type": "specimen", "id": "GDS4009_7" }, { "dataset_id": "GDS4009", "description": "2X daily milking of left udder half", "sample_id": [ "GSM677069", "GSM677071", "GSM677073", "GSM677075", "GSM677077", "GSM677079", "GSM677081" ], "type": "protocol", "id": "GDS4009_8" }, { "dataset_id": "GDS4009", "description": "4X daily milking of right udder half", "sample_id": [ "GSM677078", "GSM677080", "GSM677082", "GSM677070", "GSM677072", "GSM677074", "GSM677076" ], "type": "protocol", "id": "GDS4009_9" }, { "dataset_id": "GDS4009", "description": "biopsied immediately after milking", "sample_id": [ "GSM677070", "GSM677072", "GSM677074", "GSM677076" ], "type": "time", "id": "GDS4009_10" }, { "dataset_id": "GDS4009", "description": "biopsied 2.5 hr after milking", "sample_id": [ "GSM677077", "GSM677078", "GSM677079", "GSM677080", "GSM677081", "GSM677082" ], "type": "time", "id": "GDS4009_11" }, { "dataset_id": "GDS4009", "description": "biopsied 3.5 hr after last milking", "sample_id": [ "GSM677069", "GSM677071", "GSM677073", "GSM677075" ], "type": "time", "id": "GDS4009_12" }, { "dataset_id": "GDS4009", "description": "Experiment 1", "sample_id": [ "GSM677069", "GSM677070", "GSM677071", "GSM677072", "GSM677073", "GSM677074", "GSM677075", "GSM677076" ], "type": "other", "id": "GDS4009_13" }, { "dataset_id": "GDS4009", "description": "Experiment 2", "sample_id": [ "GSM677077", "GSM677078", "GSM677079", "GSM677080", "GSM677081", "GSM677082" ], "type": "other", "id": "GDS4009_14" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4009", "version": 1.0, "instances": "14", "variables": 19378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4009.tab", "compression": "gz" } ], [ [ "GDS401.tab" ], { "title": "Spermatogenesis time course (MG-U74A)", "description": "Analysis of C57BL/6 testis from day 1 to adult. Determination of transcripts expressed specifically by male germ cells late in spermatogenesis (postmeiotic) reveals many candidates for contraceptive targeting and fertilization participants.", "type": "Expression profiling by array", "pubmed_id": "14526100", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE640", "order": "none", "update_date": "Apr 29 2015", "subsets": [ { "dataset_id": "GDS401", "description": "1 day", "sample_id": [ "GSM9868", "GSM9871", "GSM9874" ], "type": "age", "id": "GDS401_1" }, { "dataset_id": "GDS401", "description": "4 day", "sample_id": [ "GSM9877", "GSM9880" ], "type": "age", "id": "GDS401_2" }, { "dataset_id": "GDS401", "description": "8 day", "sample_id": [ "GSM9883", "GSM9886" ], "type": "age", "id": "GDS401_3" }, { "dataset_id": "GDS401", "description": "11 day", "sample_id": [ "GSM9889", "GSM9892" ], "type": "age", "id": "GDS401_4" }, { "dataset_id": "GDS401", "description": "14 day", "sample_id": [ "GSM9895" ], "type": "age", "id": "GDS401_5" }, { "dataset_id": "GDS401", "description": "18 day", "sample_id": [ "GSM9898" ], "type": "age", "id": "GDS401_6" }, { "dataset_id": "GDS401", "description": "19 day", "sample_id": [ "GSM9910", "GSM9913" ], "type": "age", "id": "GDS401_7" }, { "dataset_id": "GDS401", "description": "21 day", "sample_id": [ "GSM9901" ], "type": "age", "id": "GDS401_8" }, { "dataset_id": "GDS401", "description": "26 day", "sample_id": [ "GSM9904" ], "type": "age", "id": "GDS401_9" }, { "dataset_id": "GDS401", "description": "29 day", "sample_id": [ "GSM9907" ], "type": "age", "id": "GDS401_10" }, { "dataset_id": "GDS401", "description": "adult", "sample_id": [ "GSM9865" ], "type": "age", "id": "GDS401_11" }, { "dataset_id": "GDS401", "description": "testis", "sample_id": [ "GSM9868", "GSM9871", "GSM9874", "GSM9877", "GSM9880", "GSM9883", "GSM9886", "GSM9889", "GSM9892", "GSM9895", "GSM9898", "GSM9901", "GSM9904", "GSM9907", "GSM9865" ], "type": "tissue", "id": "GDS401_12" }, { "dataset_id": "GDS401", "description": "testis, interstitial cells", "sample_id": [ "GSM9910" ], "type": "tissue", "id": "GDS401_13" }, { "dataset_id": "GDS401", "description": "testis, tubular somatic cells", "sample_id": [ "GSM9913" ], "type": "tissue", "id": "GDS401_14" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS401", "version": 1.0, "instances": "17", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS401.tab", "compression": "gz" } ], [ [ "GDS4010.tab" ], { "title": "Effect of dietary obesity in fathers on islets of female offspring", "description": "Analysis of pancreatic islets of control diet (CD)-fed, 13 week old female offspring of high-fat-diet (HFD)-fed Sprague-Dawley males mated with CD-fed females. Results provide insight into molecular mechanisms contributing to Type 2 diabetes-related impairments seen in offspring of obese fathers.", "type": "Expression profiling by array", "pubmed_id": "20962845", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE19877", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4010", "description": "control diet", "sample_id": [ "GSM496780", "GSM496781", "GSM496782", "GSM496783", "GSM539823", "GSM539824" ], "type": "growth protocol", "id": "GDS4010_1" }, { "dataset_id": "GDS4010", "description": "high fat diet", "sample_id": [ "GSM496784", "GSM496785", "GSM496786", "GSM496787", "GSM539825" ], "type": "growth protocol", "id": "GDS4010_2" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4010", "version": 1.0, "instances": "11", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4010.tab", "compression": "gz" } ], [ [ "GDS4011.tab" ], { "title": "Pancreatic islet-like cell clusters derived from T3 embryonic stem cells", "description": "Analysis of undifferentiated human embryonic stem cell line hES-T3 (T3ES), T3ES derived embryoid bodies, and T3ES derived pancreatic islet-like cell clusters (T3pi). Results provide insight into molecular mechanisms involved in the development of pancreas and/or differentiation of islet cells.", "type": "Expression profiling by array", "pubmed_id": "20735361", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE14503", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4011", "description": "embryonic stem cell line hES-T3 (T3ES)", "sample_id": [ "GSM239824", "GSM239825", "GSM239826" ], "type": "cell type", "id": "GDS4011_1" }, { "dataset_id": "GDS4011", "description": "T3ES derived embryoid bodies (T3EB)", "sample_id": [ "GSM239827", "GSM239828" ], "type": "cell type", "id": "GDS4011_2" }, { "dataset_id": "GDS4011", "description": "T3ES derived pancreatic islet-like cells (T3pi)", "sample_id": [ "GSM362248", "GSM362249" ], "type": "cell type", "id": "GDS4011_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4011", "version": 1.0, "instances": "7", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4011.tab", "compression": "gz" } ], [ [ "GDS4012.tab" ], { "title": "Progressive diabetic neuropathy: sural nerve", "description": "Analysis of sural nerve of progressive and non-progressive diabetic neuropathy (DN) patients. DN is characterized by progressive loss of peripheral nerve, eventually resulting in complete loss of sensation. Results provide insight into molecular mechanisms underlying DN onset and progression.", "type": "Expression profiling by array", "pubmed_id": "21926103", "platform": "GPL10526", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "17788", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE24290", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4012", "description": "progressive diabetic neuropathy", "sample_id": [ "GSM597459", "GSM597458", "GSM597457", "GSM597456", "GSM597455", "GSM597454", "GSM597453", "GSM597452", "GSM597468", "GSM597467", "GSM597466", "GSM597465", "GSM597464", "GSM597463", "GSM597462", "GSM597461", "GSM597460", "GSM597451" ], "type": "disease state", "id": "GDS4012_1" }, { "dataset_id": "GDS4012", "description": "non-progressive diabetic neuropathy", "sample_id": [ "GSM597477", "GSM597476", "GSM597475", "GSM597474", "GSM597473", "GSM597472", "GSM597471", "GSM597470", "GSM597485", "GSM597484", "GSM597483", "GSM597482", "GSM597481", "GSM597480", "GSM597479", "GSM597478", "GSM597469" ], "type": "disease state", "id": "GDS4012_2" } ], "taxid": "9606", "genes": 17727, "aggregation_function": "mean", "name": "GDS4012", "version": 1.0, "instances": "35", "variables": 17729, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4012.tab", "compression": "gz" } ], [ [ "GDS4013.tab" ], { "title": "High-fat diet effect on hepatic steatosis: liver", "description": "Analysis of liver of C57Bl/6 mice chronically fed a high-fat diet for 21 weeks to induce nonalcoholic fatty liver disease (NAFLD) which is linked to obesity and diabetes. Results provide insight into the role of adipose tissue and liver interactions in the pathogenesis of NAFLD.", "type": "Expression profiling by array", "pubmed_id": "20858684", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE24031", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4013", "description": "high-fat diet (HFD)", "sample_id": [ "GSM591486", "GSM591488", "GSM591489", "GSM591490", "GSM591483", "GSM591484", "GSM591485", "GSM591487" ], "type": "growth protocol", "id": "GDS4013_1" }, { "dataset_id": "GDS4013", "description": "low-fat diet (LFD)", "sample_id": [ "GSM591474", "GSM591476", "GSM591478", "GSM591479", "GSM591481", "GSM591482", "GSM591473", "GSM591475", "GSM591477", "GSM591480" ], "type": "growth protocol", "id": "GDS4013_2" }, { "dataset_id": "GDS4013", "description": "high gainer phenotype", "sample_id": [ "GSM591486", "GSM591488", "GSM591489", "GSM591490", "GSM591474", "GSM591476", "GSM591478", "GSM591479", "GSM591481", "GSM591482" ], "type": "other", "id": "GDS4013_3" }, { "dataset_id": "GDS4013", "description": "low gainer phenotype", "sample_id": [ "GSM591483", "GSM591484", "GSM591485", "GSM591487", "GSM591473", "GSM591475", "GSM591477", "GSM591480" ], "type": "other", "id": "GDS4013_4" }, { "dataset_id": "GDS4013", "description": "overt nonalcoholic steatohepatitis", "sample_id": [ "GSM591486", "GSM591488", "GSM591489", "GSM591490" ], "type": "disease state", "id": "GDS4013_5" }, { "dataset_id": "GDS4013", "description": "pre-nonalcoholic steatohepatitis", "sample_id": [ "GSM591483", "GSM591484", "GSM591485", "GSM591487" ], "type": "disease state", "id": "GDS4013_6" }, { "dataset_id": "GDS4013", "description": "benign hepatic steatosis", "sample_id": [ "GSM591474", "GSM591476", "GSM591478", "GSM591479", "GSM591481", "GSM591482" ], "type": "disease state", "id": "GDS4013_7" }, { "dataset_id": "GDS4013", "description": "normal", "sample_id": [ "GSM591473", "GSM591475", "GSM591477", "GSM591480" ], "type": "disease state", "id": "GDS4013_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4013", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4013.tab", "compression": "gz" } ], [ [ "GDS4014.tab" ], { "title": "Effect of mitochondrial and oxidative stress on neuroendocrine CRI-G1 cell line", "description": "Analysis of insulinoma cell line CRI-G1-RR and subclonal line CRI-G1-RS. CRI-G1-RS is more susceptible to cell death induced by mitochondrial toxins such as rotenone and more vulnerable to direct oxidative stress. Results provide insight into the molecular basis for this vulnerability.", "type": "Expression profiling by array", "pubmed_id": "21249230", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE19948", "order": "none", "update_date": "Apr 08 2013", "subsets": [ { "dataset_id": "GDS4014", "description": "CRI-G1-RR (rotenone resistant)", "sample_id": [ "GSM498426", "GSM498427", "GSM498428", "GSM498441", "GSM498442", "GSM498443" ], "type": "cell line", "id": "GDS4014_1" }, { "dataset_id": "GDS4014", "description": "CRI-G1-RS (rotenone sensitive)", "sample_id": [ "GSM498444", "GSM498445", "GSM498446", "GSM498447", "GSM498448", "GSM498449" ], "type": "cell line", "id": "GDS4014_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4014", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4014.tab", "compression": "gz" } ], [ [ "GDS4015.tab" ], { "title": "High fat diet effect on C57BL/6J quadriceps muscle", "description": "Analysis of skeletal muscle of C57BL/6J males fed a high fat diet (HFD) for 8 weeks to induce obesity and insulin resistance. Results provide insight into the molecular mechanisms underlying the development of diet-induced obesity and insulin resistance.", "type": "Expression profiling by array", "pubmed_id": "20588053", "platform": "GPL7546", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "16539", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE17576", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4015", "description": "low-fat diet (LFD)", "sample_id": [ "GSM438002", "GSM438001", "GSM438000", "GSM437999", "GSM437998", "GSM437997", "GSM437996", "GSM437995", "GSM438003", "GSM437994", "GSM437992", "GSM437991", "GSM437990", "GSM437989", "GSM437988", "GSM437987", "GSM437986", "GSM437985", "GSM437993", "GSM437984" ], "type": "growth protocol", "id": "GDS4015_1" }, { "dataset_id": "GDS4015", "description": "high-fat diet (HFD)", "sample_id": [ "GSM438012", "GSM438011", "GSM438010", "GSM438009", "GSM438008", "GSM438007", "GSM438006", "GSM438005", "GSM438013", "GSM438004" ], "type": "growth protocol", "id": "GDS4015_2" }, { "dataset_id": "GDS4015", "description": "day 0", "sample_id": [ "GSM437992", "GSM437991", "GSM437990", "GSM437989", "GSM437988", "GSM437987", "GSM437986", "GSM437985", "GSM437993", "GSM437984" ], "type": "time", "id": "GDS4015_3" }, { "dataset_id": "GDS4015", "description": "day 56", "sample_id": [ "GSM438002", "GSM438001", "GSM438000", "GSM437999", "GSM437998", "GSM437997", "GSM437996", "GSM437995", "GSM438003", "GSM437994", "GSM438012", "GSM438011", "GSM438010", "GSM438009", "GSM438008", "GSM438007", "GSM438006", "GSM438005", "GSM438013", "GSM438004" ], "type": "time", "id": "GDS4015_4" } ], "taxid": "10090", "genes": 16476, "aggregation_function": "mean", "name": "GDS4015", "version": 1.0, "instances": "30", "variables": 16479, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4015.tab", "compression": "gz" } ], [ [ "GDS4016.tab" ], { "title": "Transient hyperglycemia effect on transgenic diabetic aorta: time course", "description": "Analysis of aorta of pIns-c-MycERTAM females treated with tamoxifen (c-Myc 'ON'; rendered transiently hypo- and then hyperglycemic) then not treated (c-Myc 'OFF'; recovery from hyperglycemia). Results provide insight into molecular effects on artery caused by short-term exposure to hyperglycemia.", "type": "Expression profiling by array", "pubmed_id": "20844862", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE15401", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4016", "description": "Tamoxifen", "sample_id": [ "GSM386510", "GSM386509", "GSM386508", "GSM386507", "GSM386506", "GSM386505", "GSM386504", "GSM386503", "GSM386502" ], "type": "agent", "id": "GDS4016_1" }, { "dataset_id": "GDS4016", "description": "untreated", "sample_id": [ "GSM386516", "GSM386515", "GSM386514", "GSM386513", "GSM386512", "GSM386511", "GSM386501", "GSM386500", "GSM386499" ], "type": "agent", "id": "GDS4016_2" }, { "dataset_id": "GDS4016", "description": "control (Myc 'OFF')", "sample_id": [ "GSM386499", "GSM386500", "GSM386501" ], "type": "disease state", "id": "GDS4016_3" }, { "dataset_id": "GDS4016", "description": "hypoglycemia (Myc 'ON')", "sample_id": [ "GSM386504", "GSM386503", "GSM386502" ], "type": "disease state", "id": "GDS4016_4" }, { "dataset_id": "GDS4016", "description": "recovery from hypoglycemia (Myc 'ON')", "sample_id": [ "GSM386507", "GSM386506", "GSM386505" ], "type": "disease state", "id": "GDS4016_5" }, { "dataset_id": "GDS4016", "description": "hyperglycemia (Myc 'ON')", "sample_id": [ "GSM386510", "GSM386509", "GSM386508" ], "type": "disease state", "id": "GDS4016_6" }, { "dataset_id": "GDS4016", "description": "0 days", "sample_id": [ "GSM386501", "GSM386500", "GSM386499" ], "type": "time", "id": "GDS4016_7" }, { "dataset_id": "GDS4016", "description": "2 days", "sample_id": [ "GSM386504", "GSM386503", "GSM386502" ], "type": "time", "id": "GDS4016_8" }, { "dataset_id": "GDS4016", "description": "4 days", "sample_id": [ "GSM386507", "GSM386506", "GSM386505" ], "type": "time", "id": "GDS4016_9" }, { "dataset_id": "GDS4016", "description": "7 days", "sample_id": [ "GSM386510", "GSM386509", "GSM386508" ], "type": "time", "id": "GDS4016_10" }, { "dataset_id": "GDS4016", "description": "11 days", "sample_id": [ "GSM386513", "GSM386512", "GSM386511" ], "type": "time", "id": "GDS4016_11" }, { "dataset_id": "GDS4016", "description": "26 days", "sample_id": [ "GSM386516", "GSM386515", "GSM386514" ], "type": "time", "id": "GDS4016_12" }, { "dataset_id": "GDS4016", "description": "early recovery from hyperglycemia (Myc 'OFF')", "sample_id": [ "GSM386511", "GSM386512", "GSM386513" ], "type": "disease state", "id": "GDS4016_13" }, { "dataset_id": "GDS4016", "description": "longer term recovery from hyperglycemia (Myc 'OFF')", "sample_id": [ "GSM386514", "GSM386515", "GSM386516" ], "type": "disease state", "id": "GDS4016_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4016", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4016.tab", "compression": "gz" } ], [ [ "GDS4017.tab" ], { "title": "Activation of dendritic cells in NOD model of type 1 diabetes: time course", "description": "Analysis of therapeutic-GM4 and nontherapeutic-GM bone marrow-derived NOD dendritic cells (DC) up to 20 hrs after activation with LPS + IFN-gamma. The GM4 DC population is able to prevent diabetes in NOD mice. Results provide insight into the molecular basis of the therapeutic effect of GM4 DC.", "type": "Expression profiling by array", "pubmed_id": "21628331", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE15320", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS4017", "description": "GM (nontherapeutic) dendritic cell", "sample_id": [ "GSM384663", "GSM384658", "GSM384665", "GSM384664", "GSM384660", "GSM384662", "GSM384656" ], "type": "cell type", "id": "GDS4017_1" }, { "dataset_id": "GDS4017", "description": "GM4 (therapeutic) dendritic cell", "sample_id": [ "GSM384667", "GSM384666", "GSM384657", "GSM384669", "GSM384668", "GSM384661", "GSM384659", "GSM384655" ], "type": "cell type", "id": "GDS4017_2" }, { "dataset_id": "GDS4017", "description": "control", "sample_id": [ "GSM384655", "GSM384659", "GSM384661", "GSM384656", "GSM384662", "GSM384660" ], "type": "agent", "id": "GDS4017_3" }, { "dataset_id": "GDS4017", "description": "LPS + IFNg", "sample_id": [ "GSM384657", "GSM384666", "GSM384667", "GSM384658", "GSM384663", "GSM384668", "GSM384669", "GSM384664", "GSM384665" ], "type": "agent", "id": "GDS4017_4" }, { "dataset_id": "GDS4017", "description": "0 hours", "sample_id": [ "GSM384655", "GSM384659", "GSM384661", "GSM384656", "GSM384662", "GSM384660" ], "type": "time", "id": "GDS4017_5" }, { "dataset_id": "GDS4017", "description": "6 hours", "sample_id": [ "GSM384657", "GSM384666", "GSM384667", "GSM384658", "GSM384663" ], "type": "time", "id": "GDS4017_6" }, { "dataset_id": "GDS4017", "description": "20 hours", "sample_id": [ "GSM384668", "GSM384669", "GSM384664", "GSM384665" ], "type": "time", "id": "GDS4017_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS4017", "version": 1.0, "instances": "15", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4017.tab", "compression": "gz" } ], [ [ "GDS4018.tab" ], { "title": "Anti-CD3 monoclonal antibody effect on splenic Foxp3+ regulatory T cells", "description": "Analysis of sorted spleen T cells of BDC2.5 RAGo/o Foxp3 NOD mice after anti-CD3 treatment. Anti-CD3 treatment prevented diabetes development in BDC2.5.RAGo/o mice. Results provide insight into the mechanism of action of anti-CD3.", "type": "Expression profiling by array", "pubmed_id": "20679403", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE22527", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4018", "description": "RAG1o/o", "sample_id": [ "GSM559365", "GSM559366", "GSM559367" ], "type": "genotype/variation", "id": "GDS4018_1" }, { "dataset_id": "GDS4018", "description": "RAG1+/o", "sample_id": [ "GSM559368", "GSM559369", "GSM559370" ], "type": "genotype/variation", "id": "GDS4018_2" }, { "dataset_id": "GDS4018", "description": "anti-CD3", "sample_id": [ "GSM559365", "GSM559366", "GSM559367" ], "type": "agent", "id": "GDS4018_3" }, { "dataset_id": "GDS4018", "description": "control", "sample_id": [ "GSM559368", "GSM559369", "GSM559370" ], "type": "agent", "id": "GDS4018_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4018", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4018.tab", "compression": "gz" } ], [ [ "GDS4019.tab" ], { "title": "Thiazolidinedione pioglitazone effect on Fischer 344 model of aging: hippocampus", "description": "Analysis of hippocampus of aged F344 males fed a thiazolidinedione (TZD) pioglitazone-containing diet. TZDs have benefits in age-related conditions such as type 2 diabetes mellitus and Alzheimer's disease. Results provide insight into PIO's potentially beneficial actions in normal aging.", "type": "Expression profiling by array", "pubmed_id": "20454453", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE20219", "order": "none", "update_date": "May 31 2012", "subsets": [ { "dataset_id": "GDS4019", "description": "young, 3 months", "sample_id": [ "GSM506974", "GSM506975", "GSM506976", "GSM506977", "GSM506978", "GSM506979", "GSM506980", "GSM506981", "GSM506982", "GSM506983", "GSM506984", "GSM506985", "GSM506986", "GSM506987", "GSM506988", "GSM506989" ], "type": "age", "id": "GDS4019_1" }, { "dataset_id": "GDS4019", "description": "aged, 17 months", "sample_id": [ "GSM506990", "GSM506991", "GSM506992", "GSM506993", "GSM506994", "GSM506995", "GSM506996", "GSM506997", "GSM506998", "GSM506999", "GSM507000", "GSM507001", "GSM507002" ], "type": "age", "id": "GDS4019_2" }, { "dataset_id": "GDS4019", "description": "control, no treatment", "sample_id": [ "GSM506974", "GSM506975", "GSM506976", "GSM506977", "GSM506978", "GSM506979", "GSM506980", "GSM506981", "GSM506990", "GSM506991", "GSM506992", "GSM506993", "GSM506994", "GSM506995", "GSM506996" ], "type": "agent", "id": "GDS4019_3" }, { "dataset_id": "GDS4019", "description": "pioglitazone", "sample_id": [ "GSM506982", "GSM506983", "GSM506984", "GSM506985", "GSM506986", "GSM506987", "GSM506988", "GSM506989", "GSM506997", "GSM506998", "GSM506999", "GSM507000", "GSM507001", "GSM507002" ], "type": "agent", "id": "GDS4019_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4019", "version": 1.0, "instances": "29", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4019.tab", "compression": "gz" } ], [ [ "GDS402.tab" ], { "title": "Type 2 diabetes and renal function", "description": "Kidney tissue from a genetic model of non-insulin-dependent diabetes mellitus (NIDDM) type 2 diabetic db/db mice compared with control nondiabetic db/m littermates. 8 and 16 week old mice examined. Renal failure is common with diabetes.", "type": "Expression profiling by array", "pubmed_id": "15075187", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE642", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS402", "description": "non-diabetic", "sample_id": [ "GSM9920", "GSM9921", "GSM9922", "GSM9923", "GSM9924", "GSM9925" ], "type": "disease state", "id": "GDS402_1" }, { "dataset_id": "GDS402", "description": "type 2 diabetes", "sample_id": [ "GSM9926", "GSM9927", "GSM9928", "GSM9929", "GSM9930", "GSM9931" ], "type": "disease state", "id": "GDS402_2" }, { "dataset_id": "GDS402", "description": "8 week", "sample_id": [ "GSM9920", "GSM9921", "GSM9922", "GSM9926", "GSM9927", "GSM9928" ], "type": "age", "id": "GDS402_3" }, { "dataset_id": "GDS402", "description": "16 week", "sample_id": [ "GSM9923", "GSM9924", "GSM9925", "GSM9929", "GSM9930", "GSM9931" ], "type": "age", "id": "GDS402_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS402", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS402.tab", "compression": "gz" } ], [ [ "GDS4021.tab" ], { "title": "Rosiglitazone effect on PRDM16-deficient inguinal white adipose tissue: stromal-vascular cells", "description": "Analysis of SV cells isolated from PRDM16-depleted inguinal white adipose tissue (WAT) treated with rosiglitazone. Antidiabetic PPAR\u03b3 ligand drugs, such as rosiglitazone, activate a browning of WAT. Results provide insight into molecular mechanisms underlying white-to-brown fat conversion.", "type": "Expression profiling by array", "pubmed_id": "22405074", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE35011", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS4021", "description": "PRDM16 depletion", "sample_id": [ "GSM860624", "GSM860625", "GSM860626", "GSM860627" ], "type": "genotype/variation", "id": "GDS4021_1" }, { "dataset_id": "GDS4021", "description": "control", "sample_id": [ "GSM860620", "GSM860621", "GSM860622", "GSM860623" ], "type": "genotype/variation", "id": "GDS4021_2" }, { "dataset_id": "GDS4021", "description": "rosiglitazone", "sample_id": [ "GSM860622", "GSM860623", "GSM860626", "GSM860627" ], "type": "agent", "id": "GDS4021_3" }, { "dataset_id": "GDS4021", "description": "control, untreated", "sample_id": [ "GSM860620", "GSM860621", "GSM860624", "GSM860625" ], "type": "agent", "id": "GDS4021_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4021", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4021.tab", "compression": "gz" } ], [ [ "GDS4023.tab" ], { "title": "Molecular clock effect on distal nephron segments: time course", "description": "Temporal analysis of microdissected distal nephron convoluted/connecting tubules (DCT/CNT) or cortical collecting ducts (CCD). Renal excretion of water and major electrolytes exhibits a significant circadian rhythm. Results provide insight into the role of molecular clock in renal function.", "type": "Expression profiling by array", "pubmed_id": "19805330", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE17739", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4023", "description": "distal convoluted/connecting tubules (DCT/CNT)", "sample_id": [ "GSM442884", "GSM442885", "GSM442886", "GSM442887", "GSM442888", "GSM442889", "GSM442890", "GSM442891", "GSM442892", "GSM442893", "GSM442894", "GSM442895" ], "type": "tissue", "id": "GDS4023_1" }, { "dataset_id": "GDS4023", "description": "cortical collecting ducts (CCD)", "sample_id": [ "GSM442896", "GSM442897", "GSM442898", "GSM442899", "GSM442900", "GSM442901", "GSM442902", "GSM442903", "GSM442904", "GSM442905", "GSM442906", "GSM442907" ], "type": "tissue", "id": "GDS4023_2" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 0", "sample_id": [ "GSM442897", "GSM442896", "GSM442885", "GSM442884" ], "type": "time", "id": "GDS4023_3" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 4", "sample_id": [ "GSM442899", "GSM442898", "GSM442887", "GSM442886" ], "type": "time", "id": "GDS4023_4" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 8", "sample_id": [ "GSM442901", "GSM442900", "GSM442889", "GSM442888" ], "type": "time", "id": "GDS4023_5" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 12", "sample_id": [ "GSM442891", "GSM442890", "GSM442903", "GSM442902" ], "type": "time", "id": "GDS4023_6" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 16", "sample_id": [ "GSM442905", "GSM442904", "GSM442893", "GSM442892" ], "type": "time", "id": "GDS4023_7" }, { "dataset_id": "GDS4023", "description": "Zeitgeber time 20", "sample_id": [ "GSM442895", "GSM442894", "GSM442907", "GSM442906" ], "type": "time", "id": "GDS4023_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4023", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4023.tab", "compression": "gz" } ], [ [ "GDS4024.tab" ], { "title": "NOD mice positive for Early Insulin AutoAntibodies: pancreatic lymph nodes", "description": "Analysis of pancreatic lymph nodes of Early Insulin AutoAntibodies (E-IAA) positive 5 wk-old Non Obese Diabetic (NOD) mice. E-IAA mark the first measurable phenotypic checkpoint in T1D pathogenesis. Results provide insight into molecular mechanisms underlying initiation of T1D.", "type": "Expression profiling by array", "pubmed_id": "19799787", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE15582", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS4024", "description": "Negative for Early Insulin AutoAntibodies (E-IAA)", "sample_id": [ "GSM389830", "GSM389831", "GSM389832", "GSM389833", "GSM389834", "GSM389835" ], "type": "genotype/variation", "id": "GDS4024_1" }, { "dataset_id": "GDS4024", "description": "Positive for Early Insulin AutoAntibodies (E-IAA)", "sample_id": [ "GSM389836", "GSM389837", "GSM389838" ], "type": "genotype/variation", "id": "GDS4024_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS4024", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4024.tab", "compression": "gz" } ], [ [ "GDS4025.tab" ], { "title": "Streptozotocin-induced diabetic model with acute myocardial infarction: time course", "description": "Analysis of remote zone tissues of left ventricular (LV) free wall up to 56 days post- acute myocardial infarction (AMI) in a STZ-induced diabetic model of myocardial infarction (MI) without any glucose control or reperfusion. Results provide insight into time course effects of hyperglycemia on MI.", "type": "Expression profiling by array", "pubmed_id": "19789393", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE12639", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4025", "description": "streptozotocin-induced diabetes", "sample_id": [ "GSM317231", "GSM317232", "GSM317235", "GSM317236", "GSM317265", "GSM317267" ], "type": "disease state", "id": "GDS4025_1" }, { "dataset_id": "GDS4025", "description": "control", "sample_id": [ "GSM317177", "GSM317233", "GSM317234", "GSM317237", "GSM317264", "GSM317266" ], "type": "disease state", "id": "GDS4025_2" }, { "dataset_id": "GDS4025", "description": "18 weeks", "sample_id": [ "GSM317234", "GSM317235", "GSM317264", "GSM317267" ], "type": "age", "id": "GDS4025_3" }, { "dataset_id": "GDS4025", "description": "19 weeks", "sample_id": [ "GSM317265", "GSM317266" ], "type": "age", "id": "GDS4025_4" }, { "dataset_id": "GDS4025", "description": "20 weeks", "sample_id": [ "GSM317177", "GSM317232" ], "type": "age", "id": "GDS4025_5" }, { "dataset_id": "GDS4025", "description": "22 weeks", "sample_id": [ "GSM317231", "GSM317233", "GSM317237" ], "type": "age", "id": "GDS4025_6" }, { "dataset_id": "GDS4025", "description": "26 weeks", "sample_id": [ "GSM317236" ], "type": "age", "id": "GDS4025_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4025", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4025.tab", "compression": "gz" } ], [ [ "GDS4026.tab" ], { "title": "High-density lipoproteins effect on pancreatic \u03b2 cells subjected to apoptotic stimuli", "description": "Analysis of pancreatic \u03b2-TC3 insulinoma cell line subjected to serum deprivation in the presence of high-density lipoproteins (HDLs). Results provide insight into the molecular mechanisms underlying the HDL protective effect on pancreatic \u03b2-cells in response to stress.", "type": "Expression profiling by array", "pubmed_id": "19574449", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE17647", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4026", "description": "HDL", "sample_id": [ "GSM440312", "GSM440313", "GSM440314", "GSM440318", "GSM440319", "GSM440320", "GSM440324", "GSM440325", "GSM440326", "GSM440330", "GSM440331", "GSM440332" ], "type": "protocol", "id": "GDS4026_1" }, { "dataset_id": "GDS4026", "description": "starvation medium", "sample_id": [ "GSM440315", "GSM440316", "GSM440317", "GSM440318", "GSM440319", "GSM440320", "GSM440327", "GSM440328", "GSM440329", "GSM440330", "GSM440331", "GSM440332" ], "type": "stress", "id": "GDS4026_2" }, { "dataset_id": "GDS4026", "description": "complete medium", "sample_id": [ "GSM440309", "GSM440310", "GSM440311", "GSM440312", "GSM440313", "GSM440314", "GSM440321", "GSM440322", "GSM440323", "GSM440324", "GSM440325", "GSM440326" ], "type": "stress", "id": "GDS4026_3" }, { "dataset_id": "GDS4026", "description": "vehicle", "sample_id": [ "GSM440309", "GSM440310", "GSM440311", "GSM440315", "GSM440316", "GSM440317", "GSM440321", "GSM440322", "GSM440323", "GSM440327", "GSM440328", "GSM440329" ], "type": "protocol", "id": "GDS4026_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4026", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4026.tab", "compression": "gz" } ], [ [ "GDS4027.tab" ], { "title": "In vitro expanded and re-differentiated pancreatic islet cells", "description": "Analysis of fresh pancreatic islets, expanded islet cells, and re-differentiated cells. Three different protocols were used to expand pancreatic islets, followed by attempts at redifferentiation back to islets. Results provide insight into active pathways in expanded and redifferentiated islets.", "type": "Expression profiling by array", "pubmed_id": "19622797", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE15543", "order": "none", "update_date": "Jun 04 2012", "subsets": [ { "dataset_id": "GDS4027", "description": "normal islets", "sample_id": [ "GSM388749", "GSM388750", "GSM388753", "GSM388754", "GSM388759", "GSM388760", "GSM388766", "GSM388767" ], "type": "cell type", "id": "GDS4027_1" }, { "dataset_id": "GDS4027", "description": "expanded islets", "sample_id": [ "GSM388752", "GSM388761", "GSM388765", "GSM388771", "GSM388744", "GSM388751", "GSM388757", "GSM388763", "GSM388769", "GSM388770" ], "type": "cell type", "id": "GDS4027_2" }, { "dataset_id": "GDS4027", "description": "redifferentiated", "sample_id": [ "GSM388756", "GSM388762", "GSM388764", "GSM388742", "GSM388743", "GSM388741", "GSM388748", "GSM388740", "GSM388747", "GSM388745", "GSM388746", "GSM388755", "GSM388758", "GSM388768", "GSM388772" ], "type": "cell type", "id": "GDS4027_3" }, { "dataset_id": "GDS4027", "description": "NIH", "sample_id": [ "GSM388757", "GSM388755", "GSM388772", "GSM388770", "GSM388768", "GSM388769", "GSM388758", "GSM388763" ], "type": "protocol", "id": "GDS4027_4" }, { "dataset_id": "GDS4027", "description": "Whittier", "sample_id": [ "GSM388752", "GSM388756", "GSM388771", "GSM388764", "GSM388765", "GSM388762", "GSM388761" ], "type": "protocol", "id": "GDS4027_5" }, { "dataset_id": "GDS4027", "description": "PPRF", "sample_id": [ "GSM388745", "GSM388746", "GSM388740", "GSM388747", "GSM388741", "GSM388748", "GSM388742", "GSM388743", "GSM388744", "GSM388751" ], "type": "protocol", "id": "GDS4027_6" }, { "dataset_id": "GDS4027", "description": "unaltered", "sample_id": [ "GSM388749", "GSM388750", "GSM388753", "GSM388754", "GSM388759", "GSM388760", "GSM388766", "GSM388767" ], "type": "protocol", "id": "GDS4027_7" }, { "dataset_id": "GDS4027", "description": "2 days", "sample_id": [ "GSM388745", "GSM388746" ], "type": "time", "id": "GDS4027_8" }, { "dataset_id": "GDS4027", "description": "4 days", "sample_id": [ "GSM388740", "GSM388747" ], "type": "time", "id": "GDS4027_9" }, { "dataset_id": "GDS4027", "description": "6 days", "sample_id": [ "GSM388741", "GSM388748" ], "type": "time", "id": "GDS4027_10" }, { "dataset_id": "GDS4027", "description": "8 days", "sample_id": [ "GSM388742", "GSM388743" ], "type": "time", "id": "GDS4027_11" }, { "dataset_id": "GDS4027", "description": "na", "sample_id": [ "GSM388744", "GSM388749", "GSM388750", "GSM388751", "GSM388752", "GSM388753", "GSM388754", "GSM388755", "GSM388756", "GSM388757", "GSM388758", "GSM388759", "GSM388760", "GSM388761", "GSM388762", "GSM388763", "GSM388764", "GSM388765", "GSM388766", "GSM388767", "GSM388768", "GSM388769", "GSM388770", "GSM388771", "GSM388772" ], "type": "time", "id": "GDS4027_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4027", "version": 1.0, "instances": "33", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4027.tab", "compression": "gz" } ], [ [ "GDS4028.tab" ], { "title": "Maternal diabetes effect on developing embryo", "description": "Analysis of diabetes-exposed, E10.5 whole embryos. Diabetes was induced in FVB females (aged 7-9 wks) by streptozotocin. Maternal diabetes is a well-known risk factor for birth defects, such as neural tube defects. Results provide insight into the causative molecular mechanisms in developing embryo.", "type": "Expression profiling by array", "pubmed_id": "19538749", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE9675", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4028", "description": "maternal diabetes-exposed", "sample_id": [ "GSM244460", "GSM244461", "GSM244462", "GSM244463", "GSM244464" ], "type": "stress", "id": "GDS4028_1" }, { "dataset_id": "GDS4028", "description": "control", "sample_id": [ "GSM244465", "GSM244466" ], "type": "stress", "id": "GDS4028_2" }, { "dataset_id": "GDS4028", "description": "neural tube defects", "sample_id": [ "GSM244463", "GSM244464" ], "type": "disease state", "id": "GDS4028_3" }, { "dataset_id": "GDS4028", "description": "control embryo", "sample_id": [ "GSM244465", "GSM244466" ], "type": "disease state", "id": "GDS4028_4" }, { "dataset_id": "GDS4028", "description": "no neural tube defects", "sample_id": [ "GSM244460", "GSM244461", "GSM244462" ], "type": "disease state", "id": "GDS4028_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4028", "version": 1.0, "instances": "7", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4028.tab", "compression": "gz" } ], [ [ "GDS4029.tab" ], { "title": "Accelerated postnatal growth effect on low birth weight (LBW) model: epididymal fat", "description": "Analysis of epididymal fat from 3 week-old ICR males undernourished in utero, but permitted catch-up growth (CUG) during suckling. CUG is a growth pattern associated with obesity and diabetes risk. Results provide insight into the molecular basis of the deleterious effects of CUG.", "type": "Expression profiling by array", "pubmed_id": "19208909", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE16083", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4029", "description": "control", "sample_id": [ "GSM402542", "GSM402543", "GSM402544", "GSM402545", "GSM402546" ], "type": "growth protocol", "id": "GDS4029_1" }, { "dataset_id": "GDS4029", "description": "in utero undernutrition, ad libitum during suckling", "sample_id": [ "GSM402547", "GSM402548", "GSM402549", "GSM402550", "GSM402551" ], "type": "growth protocol", "id": "GDS4029_2" }, { "dataset_id": "GDS4029", "description": "in utero undernutrition, undernutrition during suckling", "sample_id": [ "GSM402552", "GSM402553", "GSM402554", "GSM402555" ], "type": "growth protocol", "id": "GDS4029_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4029", "version": 1.0, "instances": "14", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4029.tab", "compression": "gz" } ], [ [ "GDS4030.tab" ], { "title": "HUVECs infected with Staphylococcus aureus isolates from blood and anterior nares", "description": "Analysis of human umbilical vein endothelial cells (HUVECs) infected with S. aureus from nares of healthy carriers or from blood of septic patients (i.e. representing a disseminated disease). Results provide insight into interactions between HUVECs and virulent/non-virulent S. aureus isolates.", "type": "Expression profiling by array", "pubmed_id": "19845532", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE13736", "order": "none", "update_date": "Jun 01 2012", "subsets": [ { "dataset_id": "GDS4030", "description": "positive control", "sample_id": [ "GSM345268" ], "type": "infection", "id": "GDS4030_1" }, { "dataset_id": "GDS4030", "description": "negative control", "sample_id": [ "GSM345269" ], "type": "infection", "id": "GDS4030_2" }, { "dataset_id": "GDS4030", "description": "S. aureus from blood of septic patient", "sample_id": [ "GSM345270", "GSM345271", "GSM345272", "GSM345273", "GSM345274" ], "type": "infection", "id": "GDS4030_3" }, { "dataset_id": "GDS4030", "description": "S. aureus from nares of healthy carriers", "sample_id": [ "GSM345275", "GSM345276", "GSM345277", "GSM345278", "GSM345279" ], "type": "infection", "id": "GDS4030_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4030", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4030.tab", "compression": "gz" } ], [ [ "GDS4032.tab" ], { "title": "CD4+CD25+ regulatory T cells from spleen of NOD model of type 1 diabetes", "description": "Analysis of sorted, splenic CD4+CD25+ regulatory T (Treg) and conventional CD4+CD25- T cells (Tconv) from 6 to 7-week-old, nonobese diabetic NOD mice. FoxP3+Tregs protect against autoimmune T1D. Results provide insight into molecular mechanisms underlying the immune dysregulation in this T1D model.", "type": "Expression profiling by array", "pubmed_id": "19073938", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE6813", "order": "none", "update_date": "Jun 04 2012", "subsets": [ { "dataset_id": "GDS4032", "description": "CD4+CD25- Tconv", "sample_id": [ "GSM155600", "GSM155632", "GSM155633", "GSM155634", "GSM155635", "GSM155636" ], "type": "cell type", "id": "GDS4032_1" }, { "dataset_id": "GDS4032", "description": "CD4+CD25+ Treg", "sample_id": [ "GSM155637", "GSM155638", "GSM155639", "GSM155640", "GSM155641", "GSM155642" ], "type": "cell type", "id": "GDS4032_2" }, { "dataset_id": "GDS4032", "description": "diabetic NOD", "sample_id": [ "GSM155634", "GSM155635", "GSM155636", "GSM155640", "GSM155641", "GSM155642" ], "type": "strain", "id": "GDS4032_3" }, { "dataset_id": "GDS4032", "description": "nondiabetic B6.H2g7", "sample_id": [ "GSM155600", "GSM155632", "GSM155633", "GSM155637", "GSM155638", "GSM155639" ], "type": "strain", "id": "GDS4032_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4032", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4032.tab", "compression": "gz" } ], [ [ "GDS4034.tab" ], { "title": "Time course of diabetes-induced, anti-Interferon-\u03b3 injected NOD.Scid mice: pancreatic islets", "description": "Temporal analysis of microdissected islets of NOD.Scid mice injected with diabetogenic CD4+BDC2.5 (BDC) T cells, then injected with anti-interferon-\u03b3 monoclonal antibody which protected the mice from developing diabetes. Results provide insight into the role of INF-\u03b3 role in autoimmune diabetes.", "type": "Expression profiling by array", "pubmed_id": "18981116", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE12389", "order": "none", "update_date": "Jun 04 2012", "subsets": [ { "dataset_id": "GDS4034", "description": "untreated control", "sample_id": [ "GSM310323" ], "type": "protocol", "id": "GDS4034_1" }, { "dataset_id": "GDS4034", "description": "diabetogenic T cells BDC2.5 injected", "sample_id": [ "GSM310419", "GSM310442", "GSM310445", "GSM310441", "GSM310443", "GSM310444", "GSM310446" ], "type": "protocol", "id": "GDS4034_2" }, { "dataset_id": "GDS4034", "description": "anti-Interferon-\u03b3 injection", "sample_id": [ "GSM310443", "GSM310444", "GSM310446", "GSM310441" ], "type": "agent", "id": "GDS4034_3" }, { "dataset_id": "GDS4034", "description": "none", "sample_id": [ "GSM310419", "GSM310442", "GSM310445", "GSM310323" ], "type": "agent", "id": "GDS4034_4" }, { "dataset_id": "GDS4034", "description": "0 day", "sample_id": [ "GSM310323" ], "type": "time", "id": "GDS4034_5" }, { "dataset_id": "GDS4034", "description": "3 day", "sample_id": [ "GSM310419", "GSM310441" ], "type": "time", "id": "GDS4034_6" }, { "dataset_id": "GDS4034", "description": "4 day", "sample_id": [ "GSM310443", "GSM310442" ], "type": "time", "id": "GDS4034_7" }, { "dataset_id": "GDS4034", "description": "5 day", "sample_id": [ "GSM310444" ], "type": "time", "id": "GDS4034_8" }, { "dataset_id": "GDS4034", "description": "8 day", "sample_id": [ "GSM310446", "GSM310445" ], "type": "time", "id": "GDS4034_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4034", "version": 1.0, "instances": "8", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4034.tab", "compression": "gz" } ], [ [ "GDS4035.tab" ], { "title": "Exercise effect on high capacity runners (HCR) and low capacity runners (LCR): skeletal muscle", "description": "Analysis of soleus muscle of animals artificially selected for high and low inborn maximal oxygen uptake (VO2max) that were subjected to exercise-training. Low VO2max has a strong link to cardiovascular disease (CVD). Results provide insight into molecular mechanisms underlying low VO2max.", "type": "Expression profiling by array", "pubmed_id": "18780757", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE10527", "order": "none", "update_date": "Jun 04 2012", "subsets": [ { "dataset_id": "GDS4035", "description": "high capacity runner", "sample_id": [ "GSM265870", "GSM265872", "GSM265913", "GSM265914", "GSM265915", "GSM265916", "GSM265957", "GSM265958" ], "type": "strain", "id": "GDS4035_1" }, { "dataset_id": "GDS4035", "description": "low capacity runner", "sample_id": [ "GSM265959", "GSM265960", "GSM265961", "GSM265962", "GSM265963", "GSM265964", "GSM265965", "GSM268007" ], "type": "strain", "id": "GDS4035_2" }, { "dataset_id": "GDS4035", "description": "sedentary", "sample_id": [ "GSM265872", "GSM265913", "GSM265914", "GSM265870", "GSM265959", "GSM265960", "GSM265961", "GSM268007" ], "type": "protocol", "id": "GDS4035_3" }, { "dataset_id": "GDS4035", "description": "exercise-trained", "sample_id": [ "GSM265915", "GSM265916", "GSM265957", "GSM265958", "GSM265962", "GSM265965", "GSM265963", "GSM265964" ], "type": "protocol", "id": "GDS4035_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4035", "version": 1.0, "instances": "16", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4035.tab", "compression": "gz" } ], [ [ "GDS4036.tab" ], { "title": "Rosiglitazone effect on streptozotocin-induced diabetic DBA/2J mice: perpheral sciatic nerve", "description": "Analysis of sciatic nerve of STZ-induced diabetic DBA/2J mice treated with Rosi, a potent insulin sensitizer. Diabetic DBA/2J mice developed severe hyperglycemia, diabetic neuropathy (DN), and elevated oxidative stress. Results provide insight into the effect of Rosi treatment on DN development.", "type": "Expression profiling by array", "pubmed_id": "18583417", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE11343", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4036", "description": "streptozotocin-induction", "sample_id": [ "GSM286437", "GSM286438", "GSM286591", "GSM286592", "GSM286593", "GSM286169", "GSM286173", "GSM286176", "GSM286178", "GSM286430" ], "type": "protocol", "id": "GDS4036_1" }, { "dataset_id": "GDS4036", "description": "not induced", "sample_id": [ "GSM286159", "GSM286160", "GSM286163", "GSM286165", "GSM286431", "GSM286432", "GSM286433", "GSM286434", "GSM286436" ], "type": "protocol", "id": "GDS4036_2" }, { "dataset_id": "GDS4036", "description": "diabetes", "sample_id": [ "GSM286169", "GSM286173", "GSM286176", "GSM286178", "GSM286430", "GSM286437", "GSM286438", "GSM286591", "GSM286592", "GSM286593" ], "type": "disease state", "id": "GDS4036_3" }, { "dataset_id": "GDS4036", "description": "control", "sample_id": [ "GSM286159", "GSM286160", "GSM286163", "GSM286165", "GSM286431", "GSM286432", "GSM286433", "GSM286434", "GSM286436" ], "type": "disease state", "id": "GDS4036_4" }, { "dataset_id": "GDS4036", "description": "Rosiglitazone", "sample_id": [ "GSM286431", "GSM286432", "GSM286433", "GSM286434", "GSM286436", "GSM286437", "GSM286438", "GSM286591", "GSM286592", "GSM286593" ], "type": "agent", "id": "GDS4036_5" }, { "dataset_id": "GDS4036", "description": "none", "sample_id": [ "GSM286159", "GSM286160", "GSM286163", "GSM286165", "GSM286169", "GSM286173", "GSM286176", "GSM286178", "GSM286430" ], "type": "agent", "id": "GDS4036_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4036", "version": 1.0, "instances": "19", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4036.tab", "compression": "gz" } ], [ [ "GDS4037.tab" ], { "title": "Normal placentae at first-trimester, second-trimester, and term", "description": "Analysis of normal placenta of different gestational ages. The placenta plays a critical role in the development of the fetus. Results provide insight into gene expression patterns during normal development of the placenta.", "type": "Expression profiling by array", "pubmed_id": "19050320", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE9984", "order": "ordered", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4037", "description": "1st trimester (45-59 days)", "sample_id": [ "GSM252349", "GSM252350", "GSM252351", "GSM252352" ], "type": "development stage", "id": "GDS4037_1" }, { "dataset_id": "GDS4037", "description": "2nd trimester (109-115 days)", "sample_id": [ "GSM252353", "GSM252354", "GSM252355", "GSM252356" ], "type": "development stage", "id": "GDS4037_2" }, { "dataset_id": "GDS4037", "description": "C-section term placentae", "sample_id": [ "GSM252357", "GSM252358", "GSM252359", "GSM252360" ], "type": "development stage", "id": "GDS4037_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4037", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4037.tab", "compression": "gz" } ], [ [ "GDS4038.tab" ], { "title": "Adult and juvenile streptozocin-induced diabetic littermates: kidney cortex", "description": "Analysis of cortex from adult and juvenile Sprague-Dawley males 6 weeks after injection of STZ to induce diabetes. Puberty unmasks or accelerates the diabetic nephropathy. Results provide insight into molecular mechanisms underlying pubertal acceleration or unmasking of kidney disease in diabetes.", "type": "Expression profiling by array", "pubmed_id": "18030501", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE7253", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4038", "description": "streptozocin-induction", "sample_id": [ "GSM174809", "GSM174810", "GSM174811", "GSM174815", "GSM174816", "GSM174817" ], "type": "protocol", "id": "GDS4038_1" }, { "dataset_id": "GDS4038", "description": "not induced", "sample_id": [ "GSM174806", "GSM174807", "GSM174808", "GSM174812", "GSM174813", "GSM174814" ], "type": "protocol", "id": "GDS4038_2" }, { "dataset_id": "GDS4038", "description": "diabetic", "sample_id": [ "GSM174809", "GSM174810", "GSM174811", "GSM174815", "GSM174816", "GSM174817" ], "type": "disease state", "id": "GDS4038_3" }, { "dataset_id": "GDS4038", "description": "nondiabetic", "sample_id": [ "GSM174806", "GSM174807", "GSM174808", "GSM174812", "GSM174813", "GSM174814" ], "type": "disease state", "id": "GDS4038_4" }, { "dataset_id": "GDS4038", "description": "juvenile (10 wks old)", "sample_id": [ "GSM174809", "GSM174810", "GSM174811", "GSM174806", "GSM174807", "GSM174808" ], "type": "age", "id": "GDS4038_5" }, { "dataset_id": "GDS4038", "description": "adult (20 wks old)", "sample_id": [ "GSM174815", "GSM174816", "GSM174817", "GSM174812", "GSM174813", "GSM174814" ], "type": "age", "id": "GDS4038_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4038", "version": 1.0, "instances": "12", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4038.tab", "compression": "gz" } ], [ [ "GDS4039.tab" ], { "title": "Spleen-derived leukemia/lymphoma tumor cells from FL5.12 Bfl-1DC/p53DD-injected mice", "description": "Analysis of spleen-derived tumor cells from FL5.12 Bfl-1DC/p53DD-injected nude mice. Ubiquitination-resistant Bfl-1DC induces massive splenomegaly when coexpressed with p53DD in nude mice. Results provide insight into the role that Bfl-1's posttranslational control plays in cancer.", "type": "Expression profiling by array", "pubmed_id": "20185581", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE18204", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4039", "description": "parental cell line", "sample_id": [ "GSM455172", "GSM455173" ], "type": "cell type", "id": "GDS4039_1" }, { "dataset_id": "GDS4039", "description": "tumor 1 cell line", "sample_id": [ "GSM455174", "GSM455175" ], "type": "cell type", "id": "GDS4039_2" }, { "dataset_id": "GDS4039", "description": "tumor 2 cell line", "sample_id": [ "GSM455176", "GSM455177" ], "type": "cell type", "id": "GDS4039_3" }, { "dataset_id": "GDS4039", "description": "tumor 3 cell line", "sample_id": [ "GSM455178", "GSM455179" ], "type": "cell type", "id": "GDS4039_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4039", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4039.tab", "compression": "gz" } ], [ [ "GDS404.tab" ], { "title": "Circadian oscillations and cardiovascular function", "description": "Examination of molecular basis of circadian oscillation system in aorta. After 2 week acclimation to 12/12 hour light/dark regimen, C57Bl6 mice subjected to 36 hours constant darkness. Aortae subsequently harvested at 4 hour intervals to 48 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE414", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS404", "description": "4 h", "sample_id": [ "GSM6090", "GSM6102" ], "type": "time", "id": "GDS404_1" }, { "dataset_id": "GDS404", "description": "8 h", "sample_id": [ "GSM6091" ], "type": "time", "id": "GDS404_2" }, { "dataset_id": "GDS404", "description": "12 h", "sample_id": [ "GSM6092" ], "type": "time", "id": "GDS404_3" }, { "dataset_id": "GDS404", "description": "16 h", "sample_id": [ "GSM6093" ], "type": "time", "id": "GDS404_4" }, { "dataset_id": "GDS404", "description": "20 h", "sample_id": [ "GSM6094" ], "type": "time", "id": "GDS404_5" }, { "dataset_id": "GDS404", "description": "24 h", "sample_id": [ "GSM6095" ], "type": "time", "id": "GDS404_6" }, { "dataset_id": "GDS404", "description": "28 h", "sample_id": [ "GSM6096" ], "type": "time", "id": "GDS404_7" }, { "dataset_id": "GDS404", "description": "32 h", "sample_id": [ "GSM6097" ], "type": "time", "id": "GDS404_8" }, { "dataset_id": "GDS404", "description": "36 h", "sample_id": [ "GSM6098" ], "type": "time", "id": "GDS404_9" }, { "dataset_id": "GDS404", "description": "40 h", "sample_id": [ "GSM6099" ], "type": "time", "id": "GDS404_10" }, { "dataset_id": "GDS404", "description": "44 h", "sample_id": [ "GSM6100" ], "type": "time", "id": "GDS404_11" }, { "dataset_id": "GDS404", "description": "48 h", "sample_id": [ "GSM6101" ], "type": "time", "id": "GDS404_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS404", "version": 1.0, "instances": "13", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS404.tab", "compression": "gz" } ], [ [ "GDS4040.tab" ], { "title": "Leukemia in Cbfb+/MYH11 embryos: peripheral blood", "description": "Analysis of peripheral blood from Cbfb+/MYH11 and Cbfb-/- E12.5 embryos with that of their wildtype littermates. Cbfb+/MYH11 embryos had defects in both primitive and definitive hematopoiesis. Results provide insight into the mechanisms by which CBFB-MYH11 may contribute to leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "20007544", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE19194", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4040", "description": "Cbfb+/+", "sample_id": [ "GSM475934", "GSM475935", "GSM475936", "GSM475937", "GSM475941", "GSM475942", "GSM475943" ], "type": "genotype/variation", "id": "GDS4040_1" }, { "dataset_id": "GDS4040", "description": "Cbfb+/MYH11", "sample_id": [ "GSM475930", "GSM475931", "GSM475932", "GSM475933" ], "type": "genotype/variation", "id": "GDS4040_2" }, { "dataset_id": "GDS4040", "description": "Cbfb-/-", "sample_id": [ "GSM475938", "GSM475939", "GSM475940" ], "type": "genotype/variation", "id": "GDS4040_3" }, { "dataset_id": "GDS4040", "description": "progeny from cross: Cbfb+/MYH11 x Cbfb+\u2044+", "sample_id": [ "GSM475930", "GSM475931", "GSM475932", "GSM475933", "GSM475934", "GSM475935", "GSM475936", "GSM475937" ], "type": "specimen", "id": "GDS4040_4" }, { "dataset_id": "GDS4040", "description": "progeny from cross: Cbfb+/- x Cbfb+/-", "sample_id": [ "GSM475938", "GSM475939", "GSM475940", "GSM475941", "GSM475942", "GSM475943" ], "type": "specimen", "id": "GDS4040_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4040", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4040.tab", "compression": "gz" } ], [ [ "GDS4041.tab" ], { "title": "Shiga toxin type 1 effect on myelogenous leukemia cell line THP-1", "description": "Analysis of macrophage-like THP-1 cells treated with Stx1 or lipopolysaccharides (LPS). Shiga toxins (Stxs) are bacterial cytotoxins produced by enteric pathogens Shigella dysenteriae and some serotypes of E. coli. Results provide further insight into the effects of Stxs on cell function.", "type": "Expression profiling by array", "pubmed_id": "20351145", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE19315", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4041", "description": "untreated control", "sample_id": [ "GSM479983", "GSM479984", "GSM479985" ], "type": "agent", "id": "GDS4041_1" }, { "dataset_id": "GDS4041", "description": "LPS", "sample_id": [ "GSM479986", "GSM479987", "GSM479988" ], "type": "agent", "id": "GDS4041_2" }, { "dataset_id": "GDS4041", "description": "Shiga toxin 1", "sample_id": [ "GSM479989", "GSM479990", "GSM479991" ], "type": "agent", "id": "GDS4041_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4041", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4041.tab", "compression": "gz" } ], [ [ "GDS4042.tab" ], { "title": "Transcription factor POU4F1 effect on fetal liver cells", "description": "Analysis of fetal liver cells expressing high, wildtype, or null levels of the POU domain-containing transcription factor POU4F1. Dysregulation of POU4F1 is a recurring abnormality in t(8;21) human acute myeloid leukemia (AML). Results provide insight into the role of POU4F1 in t(8;21) AML.", "type": "Expression profiling by array", "pubmed_id": "20376082", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE19997", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4042", "description": "Pou4f1+/+", "sample_id": [ "GSM499601", "GSM499602", "GSM499603", "GSM499595", "GSM499596", "GSM499597" ], "type": "genotype/variation", "id": "GDS4042_1" }, { "dataset_id": "GDS4042", "description": "Pou4f1-/-", "sample_id": [ "GSM499598", "GSM499599", "GSM499600" ], "type": "genotype/variation", "id": "GDS4042_2" }, { "dataset_id": "GDS4042", "description": "MSCV-Pou4f1 virus", "sample_id": [ "GSM499601", "GSM499602", "GSM499603" ], "type": "agent", "id": "GDS4042_3" }, { "dataset_id": "GDS4042", "description": "control virus", "sample_id": [ "GSM499595", "GSM499596", "GSM499597", "GSM499598", "GSM499599", "GSM499600" ], "type": "agent", "id": "GDS4042_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4042", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4042.tab", "compression": "gz" } ], [ [ "GDS4043.tab" ], { "title": "Glycogen synthase kinase 3 inhibitor effect on MLL leukemia cells", "description": "Analysis of MLL leukemia cell line RS4.11 treated with GSK-3 inhibitor SB216763 for 20 hours. Results provide insight into the molecular mechanisms underlying MLL leukemia dependence on GSK-3.", "type": "Expression profiling by array", "pubmed_id": "20541704", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE19736", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4043", "description": "GSK-3 inhibitor (SB216763)", "sample_id": [ "GSM492847", "GSM492848", "GSM492849" ], "type": "agent", "id": "GDS4043_1" }, { "dataset_id": "GDS4043", "description": "untreated control", "sample_id": [ "GSM492838", "GSM492846" ], "type": "agent", "id": "GDS4043_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4043", "version": 1.0, "instances": "5", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4043.tab", "compression": "gz" } ], [ [ "GDS4045.tab" ], { "title": "CBFA2T3 knockdown and ectopic IKKbeta(EE) expression effect on Non-Hodgkin's lymphoma Reh cells", "description": "Analysis of Reh cells following transfection with shRNA targeting CBFA2T3, constitutively active IKKbeta(EE), or both in combination. Loss of CBFA2T3 expression is linked to LTR derepression. Results provide insight into the involvement of LTR derepression in the pathogenesis of human lymphomas.", "type": "Expression profiling by array", "pubmed_id": "20436485", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE20115", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4045", "description": "control", "sample_id": [ "GSM502627", "GSM502628" ], "type": "genotype/variation", "id": "GDS4045_1" }, { "dataset_id": "GDS4045", "description": "transient CBFA2T3 knockdown", "sample_id": [ "GSM502629", "GSM502630" ], "type": "genotype/variation", "id": "GDS4045_2" }, { "dataset_id": "GDS4045", "description": "transient IKKb(EE) expression", "sample_id": [ "GSM502631", "GSM502632" ], "type": "genotype/variation", "id": "GDS4045_3" }, { "dataset_id": "GDS4045", "description": "transient CBFA2T3 knockdown + transient IKKb(EE) expression", "sample_id": [ "GSM502633", "GSM502634" ], "type": "genotype/variation", "id": "GDS4045_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4045", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4045.tab", "compression": "gz" } ], [ [ "GDS4046.tab" ], { "title": "Fusion oncogenes ZMYM2/FGFR1, BCR/FGFR1 or BCR/ABL1 in cord blood CD34+ cells", "description": "Analysis of cord blood CD34+ cells transduced with MIG vector-ZMYM2/FGFR1, -BCR/FGFR1or -P210 BCR/ABL1. FGFR1 fusion oncogenes are associated with 8p11 myeloproliferative syndrome (EMS) and aggressive acute myeloid leukemia. Results provide insight into role of FGFR1 fusion oncogenes in EMS onset.", "type": "Expression profiling by array", "pubmed_id": "20554971", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE15811", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4046", "description": "BCR/FGFR1 expression", "sample_id": [ "GSM397302", "GSM397306", "GSM397310" ], "type": "genotype/variation", "id": "GDS4046_1" }, { "dataset_id": "GDS4046", "description": "ZMYM2/FGFR1 expression", "sample_id": [ "GSM397305", "GSM397309", "GSM397313" ], "type": "genotype/variation", "id": "GDS4046_2" }, { "dataset_id": "GDS4046", "description": "BCR/ABL1 expression", "sample_id": [ "GSM397304", "GSM397308", "GSM397312" ], "type": "genotype/variation", "id": "GDS4046_3" }, { "dataset_id": "GDS4046", "description": "MIG empty vector control", "sample_id": [ "GSM397303", "GSM397307", "GSM397311" ], "type": "genotype/variation", "id": "GDS4046_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4046", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4046.tab", "compression": "gz" } ], [ [ "GDS4047.tab" ], { "title": "Chronic myelogenous leukemia CD34+CD38- cells response to histone deacetylase inhibitor analog and imatinib mesylate", "description": "Analysis of sorted chronic myelogenous leukemia (CML) CD34+CD38- cells cultured with histone deacetylase inhibitor analog LBH589 (LBH) and/or BCR-ABL tyrosine kinase inhibitor imatinib mesylate (IM). Results provide insight into molecular mechanisms underlying treatment of CML with LBH and IM.", "type": "Expression profiling by array", "pubmed_id": "20478526", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE20876", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4047", "description": "no treatment control", "sample_id": [ "GSM521987", "GSM521991", "GSM521995" ], "type": "agent", "id": "GDS4047_1" }, { "dataset_id": "GDS4047", "description": "imatinib mesylate", "sample_id": [ "GSM521988", "GSM521992", "GSM521996" ], "type": "agent", "id": "GDS4047_2" }, { "dataset_id": "GDS4047", "description": "HDACi analog LBH589", "sample_id": [ "GSM521989", "GSM521993", "GSM521997" ], "type": "agent", "id": "GDS4047_3" }, { "dataset_id": "GDS4047", "description": "imatinib mesylate + HDACi analog LBH589", "sample_id": [ "GSM521990", "GSM521994", "GSM521998" ], "type": "agent", "id": "GDS4047_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4047", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4047.tab", "compression": "gz" } ], [ [ "GDS4048.tab" ], { "title": "Ovarian primordial follicle response to various growth factors", "description": "Analysis of P4 ovaries of Sprague-Dawley females exposed to growth factors. Ovarian primordial follicles are critical for female reproduction and comprise a finite pool of gametes arrested in development. Results provide insight into molecular mechanisms underlying primordial follicle development.", "type": "Expression profiling by array", "pubmed_id": "20661288", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE20324", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4048", "description": "no treatment control", "sample_id": [ "GSM509254", "GSM509255", "GSM509256", "GSM510028", "GSM510029", "GSM510030", "GSM510031", "GSM510032", "GSM510033", "GSM510034", "GSM510035", "GSM510036", "GSM510037", "GSM510038", "GSM510039", "GSM510040", "GSM510041" ], "type": "agent", "id": "GDS4048_1" }, { "dataset_id": "GDS4048", "description": "AMH 50 ng/ml", "sample_id": [ "GSM510042", "GSM510043", "GSM510044" ], "type": "agent", "id": "GDS4048_2" }, { "dataset_id": "GDS4048", "description": "BMP4 50 ng/ml", "sample_id": [ "GSM510045", "GSM510046", "GSM510047" ], "type": "agent", "id": "GDS4048_3" }, { "dataset_id": "GDS4048", "description": "CTGF 50 ng/ml", "sample_id": [ "GSM509257", "GSM509258", "GSM509259" ], "type": "agent", "id": "GDS4048_4" }, { "dataset_id": "GDS4048", "description": "FGF2 50 ng/ml", "sample_id": [ "GSM510063", "GSM510064", "GSM510065" ], "type": "agent", "id": "GDS4048_5" }, { "dataset_id": "GDS4048", "description": "FGF7 50 ng/ml", "sample_id": [ "GSM510051", "GSM510052", "GSM510053" ], "type": "agent", "id": "GDS4048_6" }, { "dataset_id": "GDS4048", "description": "GDNF 50 ng/ml", "sample_id": [ "GSM510048", "GSM510049", "GSM510050" ], "type": "agent", "id": "GDS4048_7" }, { "dataset_id": "GDS4048", "description": "KITLG 50 ng/ml", "sample_id": [ "GSM510054", "GSM510055", "GSM510056" ], "type": "agent", "id": "GDS4048_8" }, { "dataset_id": "GDS4048", "description": "LIF 50 ng/ml", "sample_id": [ "GSM510057", "GSM510058", "GSM510059" ], "type": "agent", "id": "GDS4048_9" }, { "dataset_id": "GDS4048", "description": "PDGF alfa beta hd 50 ng/ml", "sample_id": [ "GSM510060", "GSM510061", "GSM510062" ], "type": "agent", "id": "GDS4048_10" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4048", "version": 1.0, "instances": "44", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4048.tab", "compression": "gz" } ], [ [ "GDS4050.tab" ], { "title": "Lupus susceptibility locus Sle1a.1 in murine model of lupus: CD4+ T cells", "description": "Analysis of CD4+ T cells from B6.Sle1a.1 females. Sle1a.1 results in the production of activated and autoreactive CD4+ T cells. CD4+ T cells are actively involved in systemic lupus erythematosus pathogenesis. Results provide insight into the mechanisms by which Sle1a.1 alters CD4+ T cell functions.", "type": "Expression profiling by array", "pubmed_id": "22180614", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE22313", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4050", "description": "B6 wild type control", "sample_id": [ "GSM555381", "GSM555382", "GSM555383", "GSM555384" ], "type": "genotype/variation", "id": "GDS4050_1" }, { "dataset_id": "GDS4050", "description": "B6.Sle1a.1", "sample_id": [ "GSM555385", "GSM555386", "GSM555387", "GSM555388" ], "type": "genotype/variation", "id": "GDS4050_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4050", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4050.tab", "compression": "gz" } ], [ [ "GDS4051.tab" ], { "title": "Tamoxifen-resistant breast cancer cell line MCF7 subclones", "description": "Analysis of tamoxifen-sensitive and -resistant subclones of breast tumor MCF7 cells treated with estrogen (E), 4-hydroxy-tamoxifen (4-OHT), or E + 4-OHT. Success of 4-OHT therapy is limited by intrinsic and acquired drug resistance. Results provide insight into mechanisms leading to drug resistance.", "type": "Expression profiling by array", "pubmed_id": "21233418", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE26459", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4051", "description": "tamoxifen sensitive", "sample_id": [ "GSM649484", "GSM649485", "GSM649486", "GSM649493", "GSM649494", "GSM649495", "GSM649487", "GSM649488", "GSM649489", "GSM649490", "GSM649491", "GSM649492" ], "type": "genotype/variation", "id": "GDS4051_1" }, { "dataset_id": "GDS4051", "description": "tamoxifen resistant", "sample_id": [ "GSM649496", "GSM649497", "GSM649498", "GSM649505", "GSM649506", "GSM649507", "GSM649499", "GSM649500", "GSM649501", "GSM649502", "GSM649503", "GSM649504" ], "type": "genotype/variation", "id": "GDS4051_2" }, { "dataset_id": "GDS4051", "description": "tamoxifen (4-OHT)", "sample_id": [ "GSM649490", "GSM649491", "GSM649492", "GSM649502", "GSM649503", "GSM649504" ], "type": "agent", "id": "GDS4051_3" }, { "dataset_id": "GDS4051", "description": "estrogen (estradiol)", "sample_id": [ "GSM649499", "GSM649500", "GSM649501", "GSM649487", "GSM649488", "GSM649489" ], "type": "agent", "id": "GDS4051_4" }, { "dataset_id": "GDS4051", "description": "estrogen (estradiol) + tamoxifen (4-OHT)", "sample_id": [ "GSM649505", "GSM649506", "GSM649507", "GSM649493", "GSM649494", "GSM649495" ], "type": "agent", "id": "GDS4051_5" }, { "dataset_id": "GDS4051", "description": "estrogen-depleted medium (control)", "sample_id": [ "GSM649484", "GSM649485", "GSM649486", "GSM649496", "GSM649497", "GSM649498" ], "type": "agent", "id": "GDS4051_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4051", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4051.tab", "compression": "gz" } ], [ [ "GDS4052.tab" ], { "title": "Estradiol effect on ERK1/ERK2-deficient MCF-7 breast adenocarcinoma cells: time course", "description": "Analysis of MCF7 cells depleted of ERK1 or ERK2 and treated with estradiol for up to 24hrs. ERK1 and ERK2 are downstream effectors in the MAP kinase pathway; estrogen receptor \u03b1 (ER\u03b1) and MAPKs play key roles in hormone-dependent cancers. Results provide insight into ER\u03b1 and MAPK interactions.", "type": "Expression profiling by array", "pubmed_id": "20956553", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE24592", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4052", "description": "ERK1 knockdown", "sample_id": [ "GSM606133", "GSM606134", "GSM606119", "GSM606120", "GSM606121", "GSM606135", "GSM606136", "GSM606122", "GSM606123", "GSM606124" ], "type": "genotype/variation", "id": "GDS4052_1" }, { "dataset_id": "GDS4052", "description": "ERK2 knockdown", "sample_id": [ "GSM606129", "GSM606130", "GSM606113", "GSM606114", "GSM606115", "GSM606131", "GSM606132", "GSM606116", "GSM606117", "GSM606118" ], "type": "genotype/variation", "id": "GDS4052_2" }, { "dataset_id": "GDS4052", "description": "control", "sample_id": [ "GSM606125", "GSM606126", "GSM606107", "GSM606108", "GSM606109", "GSM606127", "GSM606128", "GSM606110", "GSM606111", "GSM606112" ], "type": "genotype/variation", "id": "GDS4052_3" }, { "dataset_id": "GDS4052", "description": "estradiol", "sample_id": [ "GSM606127", "GSM606128", "GSM606110", "GSM606111", "GSM606112", "GSM606135", "GSM606136", "GSM606122", "GSM606123", "GSM606124", "GSM606131", "GSM606132", "GSM606116", "GSM606117", "GSM606118" ], "type": "agent", "id": "GDS4052_4" }, { "dataset_id": "GDS4052", "description": "control", "sample_id": [ "GSM606125", "GSM606126", "GSM606107", "GSM606108", "GSM606109", "GSM606133", "GSM606134", "GSM606119", "GSM606120", "GSM606121", "GSM606129", "GSM606130", "GSM606113", "GSM606114", "GSM606115" ], "type": "agent", "id": "GDS4052_5" }, { "dataset_id": "GDS4052", "description": "4 hours", "sample_id": [ "GSM606107", "GSM606108", "GSM606109", "GSM606110", "GSM606111", "GSM606112", "GSM606119", "GSM606120", "GSM606121", "GSM606122", "GSM606123", "GSM606124", "GSM606113", "GSM606114", "GSM606115", "GSM606116", "GSM606117", "GSM606118" ], "type": "time", "id": "GDS4052_6" }, { "dataset_id": "GDS4052", "description": "24 hours", "sample_id": [ "GSM606125", "GSM606126", "GSM606127", "GSM606128", "GSM606133", "GSM606134", "GSM606135", "GSM606136", "GSM606129", "GSM606130", "GSM606131", "GSM606132" ], "type": "time", "id": "GDS4052_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4052", "version": 1.0, "instances": "30", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4052.tab", "compression": "gz" } ], [ [ "GDS4053.tab" ], { "title": "Postmenopausal estrogen receptor \u03b1-positive breast tumor with PIK3CA mutation", "description": "Analysis of estrogen receptor \u03b1-positive (ER\u03b1+) breast tumors with phosphatidylinositol 3-kinase catalytic subunit (PIK3CA) mutation. PIK3CA mutations have been observed in 30% to 40% of ER\u03b1-positive breast tumors. Results provide insight into the role of PIK3CA mutations in breast tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "21209903", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "transformed count", "reference_series": "GSE22035", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4053", "description": "with PIK3CA mutation", "sample_id": [ "GSM547774", "GSM547775", "GSM547777", "GSM547778", "GSM547783", "GSM547792", "GSM547794", "GSM547799", "GSM547800", "GSM547806", "GSM547772", "GSM547807", "GSM547809", "GSM547773" ], "type": "genotype/variation", "id": "GDS4053_1" }, { "dataset_id": "GDS4053", "description": "without PIK3CA mutation", "sample_id": [ "GSM547776", "GSM547768", "GSM547779", "GSM547780", "GSM547781", "GSM547782", "GSM547784", "GSM547769", "GSM547785", "GSM547786", "GSM547787", "GSM547788", "GSM547789", "GSM547790", "GSM547770", "GSM547791", "GSM547793", "GSM547795", "GSM547796", "GSM547771", "GSM547797", "GSM547798", "GSM547801", "GSM547802", "GSM547803", "GSM547804", "GSM547805", "GSM547808", "GSM547810" ], "type": "genotype/variation", "id": "GDS4053_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4053", "version": 1.0, "instances": "43", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4053.tab", "compression": "gz" } ], [ [ "GDS4054.tab" ], { "title": "microRNA-221/222 knockdown effect on fulvestrant-resistant MCF7 breast cancer cells", "description": "Analysis of fulvestrant-resistant MCF7 cells transfected with antisense miRNA inhibitors targeting miR-221 and miR-222. miR-221/222 knockdown inhibits cell proliferation in fulvestrant-resistant MCF7-F cells. Results provide insight into the role of miR-221/222 in acquired resistance to fulvestrant.", "type": "Expression profiling by array", "pubmed_id": "21057537", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE19777", "order": "none", "update_date": "Jun 05 2012", "subsets": [ { "dataset_id": "GDS4054", "description": "control", "sample_id": [ "GSM493918", "GSM493919", "GSM493920" ], "type": "genotype/variation", "id": "GDS4054_1" }, { "dataset_id": "GDS4054", "description": "miRNA-221 knockdown", "sample_id": [ "GSM493921", "GSM493922", "GSM493923" ], "type": "genotype/variation", "id": "GDS4054_2" }, { "dataset_id": "GDS4054", "description": "miRNA-222 knockdown", "sample_id": [ "GSM493924", "GSM493925", "GSM493926" ], "type": "genotype/variation", "id": "GDS4054_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4054", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4054.tab", "compression": "gz" } ], [ [ "GDS4055.tab" ], { "title": "Breast tumor-derived stromal-epithelial cocultures", "description": "Analysis of high and low grade breast cancer cells co-cultured with stromal fibroblasts. In breast tumors, fibroblasts generally represent the most abundant cell type in the stroma. Results provide insight into malignant breast epithelial responses to stromal signaling.", "type": "Expression profiling by array", "pubmed_id": "21625507", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE27018", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4055", "description": "high grade tumor", "sample_id": [ "GSM665095", "GSM665102", "GSM665103", "GSM665447", "GSM665450", "GSM665452", "GSM665455" ], "type": "tissue", "id": "GDS4055_1" }, { "dataset_id": "GDS4055", "description": "low grade tumor", "sample_id": [ "GSM665042", "GSM665066", "GSM665067", "GSM665068", "GSM665069", "GSM665070", "GSM665071", "GSM665072", "GSM665073", "GSM665094" ], "type": "tissue", "id": "GDS4055_2" }, { "dataset_id": "GDS4055", "description": "co-culture with high grade fibroblast", "sample_id": [ "GSM665071", "GSM665072", "GSM665073", "GSM665094", "GSM665455" ], "type": "growth protocol", "id": "GDS4055_3" }, { "dataset_id": "GDS4055", "description": "co-culture with low grade fibroblast", "sample_id": [ "GSM665447", "GSM665450", "GSM665452", "GSM665069", "GSM665070" ], "type": "growth protocol", "id": "GDS4055_4" }, { "dataset_id": "GDS4055", "description": "no co-culture", "sample_id": [ "GSM665042", "GSM665066", "GSM665067", "GSM665068", "GSM665095", "GSM665102", "GSM665103" ], "type": "growth protocol", "id": "GDS4055_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4055", "version": 1.0, "instances": "17", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4055.tab", "compression": "gz" } ], [ [ "GDS4056.tab" ], { "title": "ER-positive/HER2-negative and ER-negative/HER2-negative breast cancer biopsies (USO-02103 cohort)", "description": "Analysis of pre-treatment biopsies from 62 HER2-normal breast cancer patients (ER-positive and ER-negative subtypes) from US Oncology clinical trial 02103. Results provide insight into molecular mechanisms associated with chemotherapy sensitivity in breast cancer subtypes.", "type": "Expression profiling by array", "pubmed_id": "21191116", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "61", "value_type": "transformed count", "reference_series": "GSE23988", "order": "none", "update_date": "Jun 28 2012", "subsets": [ { "dataset_id": "GDS4056", "description": "prechemo T stage 1", "sample_id": [ "GSM590886" ], "type": "disease state", "id": "GDS4056_1" }, { "dataset_id": "GDS4056", "description": "prechemo T stage 2", "sample_id": [ "GSM590851", "GSM590864", "GSM590873", "GSM590898", "GSM590842", "GSM590869", "GSM590874", "GSM590889", "GSM590896", "GSM590841", "GSM590843", "GSM590849", "GSM590859", "GSM590892", "GSM590895", "GSM590897", "GSM590900", "GSM590844", "GSM590878", "GSM590882" ], "type": "disease state", "id": "GDS4056_2" }, { "dataset_id": "GDS4056", "description": "prechemo T stage 3", "sample_id": [ "GSM590840", "GSM590852", "GSM590853", "GSM590858", "GSM590862", "GSM590867", "GSM590871", "GSM590877", "GSM590879", "GSM590880", "GSM590884", "GSM590848", "GSM590850", "GSM590855", "GSM590860", "GSM590870", "GSM590885", "GSM590890", "GSM590894", "GSM590847", "GSM590854", "GSM590856", "GSM590857", "GSM590861", "GSM590863", "GSM590865", "GSM590866", "GSM590868", "GSM590872", "GSM590876", "GSM590883", "GSM590887", "GSM590888", "GSM590891", "GSM590893", "GSM590899", "GSM590845", "GSM590846", "GSM590875", "GSM590881" ], "type": "disease state", "id": "GDS4056_3" }, { "dataset_id": "GDS4056", "description": "grade 1", "sample_id": [ "GSM590859" ], "type": "specimen", "id": "GDS4056_4" }, { "dataset_id": "GDS4056", "description": "grade 2", "sample_id": [ "GSM590841", "GSM590843", "GSM590844", "GSM590847", "GSM590853", "GSM590857", "GSM590864", "GSM590865", "GSM590870", "GSM590872", "GSM590878", "GSM590883", "GSM590884", "GSM590887", "GSM590888", "GSM590891", "GSM590895", "GSM590897", "GSM590899" ], "type": "specimen", "id": "GDS4056_5" }, { "dataset_id": "GDS4056", "description": "grade 3", "sample_id": [ "GSM590842", "GSM590845", "GSM590846", "GSM590848", "GSM590849", "GSM590850", "GSM590851", "GSM590852", "GSM590854", "GSM590855", "GSM590856", "GSM590858", "GSM590860", "GSM590861", "GSM590862", "GSM590863", "GSM590866", "GSM590867", "GSM590869", "GSM590871", "GSM590873", "GSM590874", "GSM590875", "GSM590876", "GSM590877", "GSM590879", "GSM590880", "GSM590881", "GSM590882", "GSM590886", "GSM590889", "GSM590890", "GSM590892", "GSM590893", "GSM590894", "GSM590898", "GSM590900" ], "type": "specimen", "id": "GDS4056_6" }, { "dataset_id": "GDS4056", "description": "NA", "sample_id": [ "GSM590840", "GSM590868", "GSM590885", "GSM590896" ], "type": "specimen", "id": "GDS4056_7" }, { "dataset_id": "GDS4056", "description": "ER -", "sample_id": [ "GSM590840", "GSM590851", "GSM590852", "GSM590853", "GSM590858", "GSM590862", "GSM590864", "GSM590867", "GSM590871", "GSM590873", "GSM590877", "GSM590879", "GSM590880", "GSM590884", "GSM590886", "GSM590898", "GSM590842", "GSM590848", "GSM590850", "GSM590855", "GSM590860", "GSM590869", "GSM590870", "GSM590874", "GSM590885", "GSM590889", "GSM590890", "GSM590894", "GSM590896" ], "type": "genotype/variation", "id": "GDS4056_8" }, { "dataset_id": "GDS4056", "description": "ER +", "sample_id": [ "GSM590841", "GSM590843", "GSM590847", "GSM590849", "GSM590854", "GSM590856", "GSM590857", "GSM590859", "GSM590861", "GSM590863", "GSM590865", "GSM590866", "GSM590868", "GSM590872", "GSM590876", "GSM590883", "GSM590887", "GSM590888", "GSM590891", "GSM590892", "GSM590893", "GSM590895", "GSM590897", "GSM590899", "GSM590900", "GSM590844", "GSM590845", "GSM590846", "GSM590875", "GSM590878", "GSM590881", "GSM590882" ], "type": "genotype/variation", "id": "GDS4056_9" }, { "dataset_id": "GDS4056", "description": "postchemo: no invasive cancer", "sample_id": [ "GSM590842", "GSM590844", "GSM590845", "GSM590846", "GSM590848", "GSM590850", "GSM590855", "GSM590860", "GSM590869", "GSM590870", "GSM590874", "GSM590875", "GSM590878", "GSM590881", "GSM590882", "GSM590885", "GSM590889", "GSM590890", "GSM590894", "GSM590896" ], "type": "other", "id": "GDS4056_10" }, { "dataset_id": "GDS4056", "description": "postchemo: residual invasive cancer", "sample_id": [ "GSM590840", "GSM590841", "GSM590843", "GSM590847", "GSM590849", "GSM590851", "GSM590852", "GSM590853", "GSM590854", "GSM590856", "GSM590857", "GSM590858", "GSM590859", "GSM590861", "GSM590862", "GSM590863", "GSM590864", "GSM590865", "GSM590866", "GSM590867", "GSM590868", "GSM590871", "GSM590872", "GSM590873", "GSM590876", "GSM590877", "GSM590879", "GSM590880", "GSM590883", "GSM590884", "GSM590886", "GSM590887", "GSM590888", "GSM590891", "GSM590892", "GSM590893", "GSM590895", "GSM590897", "GSM590898", "GSM590899", "GSM590900" ], "type": "other", "id": "GDS4056_11" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4056", "version": 1.0, "instances": "61", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4056.tab", "compression": "gz" } ], [ [ "GDS4057.tab" ], { "title": "ER-positive/HER2-negative and ER-negative/HER2-negative breast cancer biopsies (MDACC/IGR cohort)", "description": "Analysis of pre-treatment biopsies from 103 HER2-normal breast cancer patients (ER-positive and ER-negative subtypes) from MD Anderson Cancer Center/Institut Goustave Russy. Results provide insight into molecular mechanisms associated with chemotherapy sensitivity in breast cancer subtypes.", "type": "Expression profiling by array", "pubmed_id": "21191116", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "103", "value_type": "transformed count", "reference_series": "GSE22093", "order": "none", "update_date": "Jun 28 2012", "subsets": [ { "dataset_id": "GDS4057", "description": "prechemo T stage 4", "sample_id": [ "GSM549240", "GSM549274", "GSM549279", "GSM549294", "GSM549300", "GSM549304", "GSM549305", "GSM549306", "GSM549307", "GSM549308", "GSM750748", "GSM750753", "GSM549289", "GSM549291", "GSM549303", "GSM549309", "GSM750738", "GSM750752" ], "type": "disease state", "id": "GDS4057_1" }, { "dataset_id": "GDS4057", "description": "prechemo T stage 3", "sample_id": [ "GSM549259", "GSM549269", "GSM549299", "GSM549301", "GSM549302", "GSM750746", "GSM549230", "GSM549231", "GSM549232", "GSM549233", "GSM549234", "GSM549237", "GSM549246", "GSM549248", "GSM549250", "GSM549254", "GSM549255", "GSM549271", "GSM549273", "GSM549287", "GSM549310", "GSM549311", "GSM750734", "GSM750735", "GSM750736", "GSM750749" ], "type": "disease state", "id": "GDS4057_2" }, { "dataset_id": "GDS4057", "description": "prechemo T stage 2", "sample_id": [ "GSM549235", "GSM549239", "GSM549241", "GSM549243", "GSM549247", "GSM549258", "GSM549261", "GSM549264", "GSM549266", "GSM549268", "GSM549270", "GSM549272", "GSM549277", "GSM549280", "GSM549281", "GSM549283", "GSM549285", "GSM549286", "GSM549288", "GSM549292", "GSM549293", "GSM549295", "GSM549297", "GSM549236", "GSM549238", "GSM549242", "GSM549244", "GSM549245", "GSM549249", "GSM549251", "GSM549252", "GSM549253", "GSM549256", "GSM549257", "GSM549260", "GSM549262", "GSM549263", "GSM549265", "GSM549267", "GSM549278", "GSM549282", "GSM549290", "GSM549296", "GSM549298", "GSM750739", "GSM750741", "GSM750742", "GSM750743", "GSM750744", "GSM750745", "GSM750750" ], "type": "disease state", "id": "GDS4057_3" }, { "dataset_id": "GDS4057", "description": "prechemo T stage 1", "sample_id": [ "GSM549275", "GSM549276" ], "type": "disease state", "id": "GDS4057_4" }, { "dataset_id": "GDS4057", "description": "prechemo T stage 0", "sample_id": [ "GSM549284" ], "type": "disease state", "id": "GDS4057_5" }, { "dataset_id": "GDS4057", "description": "prechemo T stage NA", "sample_id": [ "GSM750740", "GSM750747", "GSM750751", "GSM750737", "GSM750754" ], "type": "disease state", "id": "GDS4057_6" }, { "dataset_id": "GDS4057", "description": "BMN grade 3", "sample_id": [ "GSM549230", "GSM549231", "GSM549232", "GSM549233", "GSM549234", "GSM549235", "GSM549236", "GSM549237", "GSM549238", "GSM549239", "GSM549242", "GSM549244", "GSM549245", "GSM549249", "GSM549250", "GSM549251", "GSM549252", "GSM549253", "GSM549254", "GSM549256", "GSM549257", "GSM549258", "GSM549260", "GSM549263", "GSM549264", "GSM549265", "GSM549266", "GSM549267", "GSM549271", "GSM549274", "GSM549282", "GSM549284", "GSM549287", "GSM549289", "GSM549291", "GSM549293", "GSM549296", "GSM750734", "GSM750735", "GSM750736", "GSM750738", "GSM750739", "GSM750742", "GSM750744", "GSM750745", "GSM750749", "GSM750750" ], "type": "specimen", "id": "GDS4057_7" }, { "dataset_id": "GDS4057", "description": "BMN grade 2", "sample_id": [ "GSM549240", "GSM549241", "GSM549243", "GSM549246", "GSM549247", "GSM549248", "GSM549255", "GSM549259", "GSM549261", "GSM549262", "GSM549270", "GSM549277", "GSM549278", "GSM549279", "GSM549280", "GSM549281", "GSM549283", "GSM549285", "GSM549286", "GSM549288", "GSM549292", "GSM549294", "GSM549295", "GSM549297", "GSM549298", "GSM750741", "GSM750743", "GSM750746", "GSM750748" ], "type": "specimen", "id": "GDS4057_8" }, { "dataset_id": "GDS4057", "description": "BMN grade 1", "sample_id": [ "GSM549268", "GSM549269", "GSM549276" ], "type": "specimen", "id": "GDS4057_9" }, { "dataset_id": "GDS4057", "description": "na", "sample_id": [ "GSM549272", "GSM549273", "GSM549275", "GSM549290", "GSM549299", "GSM549300", "GSM549301", "GSM549302", "GSM549303", "GSM549304", "GSM549305", "GSM549306", "GSM549307", "GSM549308", "GSM549309", "GSM549310", "GSM549311", "GSM750737", "GSM750740", "GSM750747", "GSM750751", "GSM750752", "GSM750753", "GSM750754" ], "type": "specimen", "id": "GDS4057_10" }, { "dataset_id": "GDS4057", "description": "ER (IHC): -", "sample_id": [ "GSM549230", "GSM549231", "GSM549233", "GSM549234", "GSM549235", "GSM549237", "GSM549240", "GSM549242", "GSM549243", "GSM549245", "GSM549246", "GSM549248", "GSM549250", "GSM549252", "GSM549253", "GSM549254", "GSM549255", "GSM549256", "GSM549257", "GSM549262", "GSM549263", "GSM549265", "GSM549267", "GSM549268", "GSM549273", "GSM549278", "GSM549282", "GSM549283", "GSM549286", "GSM549287", "GSM549289", "GSM549290", "GSM549291", "GSM549296", "GSM549298", "GSM549299", "GSM549300", "GSM549301", "GSM549303", "GSM549309", "GSM549310", "GSM549311", "GSM750734", "GSM750735", "GSM750736", "GSM750739", "GSM750741", "GSM750742", "GSM750744", "GSM750745", "GSM750746", "GSM750748", "GSM750749", "GSM750750", "GSM750752", "GSM750753" ], "type": "genotype/variation", "id": "GDS4057_11" }, { "dataset_id": "GDS4057", "description": "ER (IHC): +", "sample_id": [ "GSM549232", "GSM549236", "GSM549238", "GSM549239", "GSM549241", "GSM549244", "GSM549247", "GSM549249", "GSM549251", "GSM549258", "GSM549259", "GSM549260", "GSM549261", "GSM549264", "GSM549266", "GSM549269", "GSM549270", "GSM549271", "GSM549272", "GSM549274", "GSM549275", "GSM549276", "GSM549277", "GSM549279", "GSM549280", "GSM549281", "GSM549284", "GSM549285", "GSM549288", "GSM549292", "GSM549293", "GSM549294", "GSM549295", "GSM549297", "GSM549302", "GSM549304", "GSM549305", "GSM549306", "GSM549307", "GSM549308", "GSM750738", "GSM750743" ], "type": "genotype/variation", "id": "GDS4057_12" }, { "dataset_id": "GDS4057", "description": "ER (IHC): NA", "sample_id": [ "GSM750737", "GSM750740", "GSM750747", "GSM750751", "GSM750754" ], "type": "genotype/variation", "id": "GDS4057_13" }, { "dataset_id": "GDS4057", "description": "postchemo: residual invasive cancer", "sample_id": [ "GSM549274", "GSM549279", "GSM549294", "GSM549300", "GSM549304", "GSM549305", "GSM549307", "GSM750748", "GSM750753", "GSM549289", "GSM549291", "GSM549303", "GSM549309", "GSM549269", "GSM549299", "GSM549301", "GSM549302", "GSM549233", "GSM549234", "GSM549246", "GSM549248", "GSM549250", "GSM549271", "GSM549273", "GSM549287", "GSM549310", "GSM549311", "GSM750735", "GSM750736", "GSM750749", "GSM549235", "GSM549239", "GSM549241", "GSM549243", "GSM549247", "GSM549261", "GSM549266", "GSM549268", "GSM549270", "GSM549272", "GSM549277", "GSM549280", "GSM549281", "GSM549283", "GSM549285", "GSM549288", "GSM549292", "GSM549293", "GSM549295", "GSM549297", "GSM549244", "GSM549245", "GSM549249", "GSM549260", "GSM549262", "GSM549265", "GSM549278", "GSM549282", "GSM549296", "GSM549298", "GSM750739", "GSM750741", "GSM750742", "GSM750743", "GSM750744", "GSM750750", "GSM549275", "GSM549276", "GSM549284" ], "type": "other", "id": "GDS4057_14" }, { "dataset_id": "GDS4057", "description": "postchemo: no invasive cancer", "sample_id": [ "GSM549240", "GSM549306", "GSM549308", "GSM750738", "GSM549259", "GSM750746", "GSM549230", "GSM549231", "GSM549232", "GSM549237", "GSM549254", "GSM549255", "GSM750734", "GSM549258", "GSM549264", "GSM549286", "GSM549236", "GSM549238", "GSM549242", "GSM549251", "GSM549252", "GSM549253", "GSM549256", "GSM549257", "GSM549263", "GSM549267", "GSM549290", "GSM750745" ], "type": "other", "id": "GDS4057_15" }, { "dataset_id": "GDS4057", "description": "postchemo: NA", "sample_id": [ "GSM750740", "GSM750747", "GSM750751", "GSM750737", "GSM750754", "GSM750752" ], "type": "other", "id": "GDS4057_16" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4057", "version": 1.0, "instances": "103", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4057.tab", "compression": "gz" } ], [ [ "GDS4058.tab" ], { "title": "SIRT3 knockout effect on brown adipose tissue", "description": "Analysis of brown adipose tissue of sirtuin SIRT3 knockout 129Sv males. SIRT3 is a crucial regulator of the Warburg effect, a metabolic reprogramming that provides tumor cells with the substrates required for biomass generation. Results provide insight into the role of SIRT3 in tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "21397863", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE27309", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4058", "description": "wild type", "sample_id": [ "GSM675147", "GSM675148", "GSM675149", "GSM675150", "GSM675151" ], "type": "genotype/variation", "id": "GDS4058_1" }, { "dataset_id": "GDS4058", "description": "SIRT3 knockout", "sample_id": [ "GSM675152", "GSM675153", "GSM675154", "GSM675155", "GSM675156" ], "type": "genotype/variation", "id": "GDS4058_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4058", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4058.tab", "compression": "gz" } ], [ [ "GDS4059.tab" ], { "title": "Gamma-tocotrienol effect on breast cancer MCF-7 cells", "description": "Analysis of MCF-7 cells treated with gamma-tocotrienol (\u03b3-T3). Tocotrienols (T3s) inhibit the growth of various cancer cell lines without affecting normal cells. Results provide insight into the molecular mechanisms of action of T3s on cell death and other growth inhibitory pathways.", "type": "Expression profiling by array", "pubmed_id": "21429729", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE21946", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4059", "description": "control", "sample_id": [ "GSM545861", "GSM545862", "GSM545863", "GSM545864" ], "type": "agent", "id": "GDS4059_1" }, { "dataset_id": "GDS4059", "description": "\u03b3-tocotrienol", "sample_id": [ "GSM545865", "GSM545866", "GSM545867", "GSM545868" ], "type": "agent", "id": "GDS4059_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4059", "version": 1.0, "instances": "8", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4059.tab", "compression": "gz" } ], [ [ "GDS4061.tab" ], { "title": "Estrogen receptor alpha-silenced MCF7 breast cancer cells", "description": "Analysis of MCF7 breast cancer cells after siRNA-mediated silencing of the estrogen receptor \u03b1 (ER\u03b1). The induced ER\u03b1 silencing resulted in estrogen/tamoxifen resistant cells (pII). Results provide insight into molecular events underlying the endocrine drug resistant phenotype in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21713035", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE27473", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4061", "description": "control", "sample_id": [ "GSM678802", "GSM678803", "GSM678804" ], "type": "genotype/variation", "id": "GDS4061_1" }, { "dataset_id": "GDS4061", "description": "estrogen receptor \u03b1 knockdown", "sample_id": [ "GSM678805", "GSM678806", "GSM678807" ], "type": "genotype/variation", "id": "GDS4061_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4061", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4061.tab", "compression": "gz" } ], [ [ "GDS4063.tab" ], { "title": "Estrogen or insulin-like growth factor I stimulated MCF-7 breast cancer cells: time course", "description": "Analysis of MCF-7 breast cancer cells treated with estradiol (E2) or insulin-like growth factor I (IGF-I) for up to 24 hours. E2 and IGF-I signaling are important for normal mammary development and breast cancer. Results provide insight into the cross-talk between these pathways.", "type": "Expression profiling by array", "pubmed_id": "21541704", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE26834", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4063", "description": "3 hours", "sample_id": [ "GSM659807", "GSM659808", "GSM659809", "GSM659810", "GSM659811", "GSM659812", "GSM659805", "GSM659806" ], "type": "time", "id": "GDS4063_1" }, { "dataset_id": "GDS4063", "description": "24 hours", "sample_id": [ "GSM659816", "GSM659817", "GSM659818", "GSM659819", "GSM659820", "GSM659821", "GSM659813", "GSM659814", "GSM659815" ], "type": "time", "id": "GDS4063_2" }, { "dataset_id": "GDS4063", "description": "estradiol", "sample_id": [ "GSM659816", "GSM659817", "GSM659818", "GSM659807", "GSM659808", "GSM659809" ], "type": "agent", "id": "GDS4063_3" }, { "dataset_id": "GDS4063", "description": "IGF-I", "sample_id": [ "GSM659819", "GSM659820", "GSM659821", "GSM659810", "GSM659811", "GSM659812" ], "type": "agent", "id": "GDS4063_4" }, { "dataset_id": "GDS4063", "description": "control", "sample_id": [ "GSM659813", "GSM659814", "GSM659815", "GSM659805", "GSM659806" ], "type": "agent", "id": "GDS4063_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4063", "version": 1.0, "instances": "17", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4063.tab", "compression": "gz" } ], [ [ "GDS4064.tab" ], { "title": "Keratin 6a+, K6-tva RCAS-PyMT transgenic model of breast cancer", "description": "Analysis of RCAS-PyMT-induced mammary tumors from K6-tva and MMTV-tva transgenic FVB/N mice. Tumors in the K6a-tva line resemble the normal breast-like subtype of human breast cancer, offering a tool to study the evolution of normal-like breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21532625", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE20614", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4064", "description": "K6-tva RCAS-PyMT", "sample_id": [ "GSM517892", "GSM517893", "GSM517894", "GSM517895", "GSM517896" ], "type": "genotype/variation", "id": "GDS4064_1" }, { "dataset_id": "GDS4064", "description": "MMTV-tva RCAS-PyMT", "sample_id": [ "GSM517887", "GSM517888", "GSM517889", "GSM517890", "GSM517891" ], "type": "genotype/variation", "id": "GDS4064_2" }, { "dataset_id": "GDS4064", "description": "MMTV-PyMT", "sample_id": [ "GSM517882", "GSM517883", "GSM517884", "GSM517885", "GSM517886" ], "type": "genotype/variation", "id": "GDS4064_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4064", "version": 1.0, "instances": "15", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4064.tab", "compression": "gz" } ], [ [ "GDS4065.tab" ], { "title": "Effect of estrogen receptor- or retinoic acid receptor-knockdown on estrogen-sensitive MCF7 breast cancer cells", "description": "Analysis of MCF7 cells transfected with control siRNA, estrogen receptor \u03b1 (ER) siRNA or retinoic acid receptor \u03b1 (RAR\u03b1) siRNA. Basal proliferation of MCF7 cells was diminished by knocking down ER or RAR\u03b1. Results provided insight into the molecular basis of basal proliferation.", "type": "Expression profiling by array", "pubmed_id": "21299862", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE26298", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4065", "description": "control", "sample_id": [ "GSM645710", "GSM645711", "GSM645712", "GSM645713", "GSM645714", "GSM645715", "GSM645718", "GSM645719" ], "type": "genotype/variation", "id": "GDS4065_1" }, { "dataset_id": "GDS4065", "description": "estrogen receptor \u03b1 knockdown", "sample_id": [ "GSM645716", "GSM645717" ], "type": "genotype/variation", "id": "GDS4065_2" }, { "dataset_id": "GDS4065", "description": "retinoic acid receptor \u03b1 knockdown", "sample_id": [ "GSM645720", "GSM645721" ], "type": "genotype/variation", "id": "GDS4065_3" }, { "dataset_id": "GDS4065", "description": "vehicle", "sample_id": [ "GSM645710", "GSM645711", "GSM645716", "GSM645717", "GSM645718", "GSM645719", "GSM645720", "GSM645721" ], "type": "agent", "id": "GDS4065_4" }, { "dataset_id": "GDS4065", "description": "4-hydroxytamoxifen", "sample_id": [ "GSM645712", "GSM645713", "GSM645714", "GSM645715" ], "type": "agent", "id": "GDS4065_5" }, { "dataset_id": "GDS4065", "description": "n/a", "sample_id": [ "GSM645710", "GSM645711", "GSM645716", "GSM645717", "GSM645718", "GSM645719", "GSM645720", "GSM645721" ], "type": "dose", "id": "GDS4065_6" }, { "dataset_id": "GDS4065", "description": "100 nM", "sample_id": [ "GSM645712", "GSM645713" ], "type": "dose", "id": "GDS4065_7" }, { "dataset_id": "GDS4065", "description": "500 nM", "sample_id": [ "GSM645714", "GSM645715" ], "type": "dose", "id": "GDS4065_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4065", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4065.tab", "compression": "gz" } ], [ [ "GDS4066.tab" ], { "title": "Ovarian cancer intraperitoneal xenograft model", "description": "Analysis of estrogen receptor (ER)+PEO4 or ER-2008 human epithelial ovarian cancer (EOC) cells laser captured from intraperitoneal xenografts of mice treated with estrogen (E2). Menopausal E2 replacement therapy increases risk of ER+ EOC. Results provide insight into E2 effects on tumor promotion.", "type": "Expression profiling by array", "pubmed_id": "20959477", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE22600", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4066", "description": "2008", "sample_id": [ "GSM560761", "GSM560766", "GSM560767", "GSM560768", "GSM560762", "GSM560763", "GSM560769", "GSM560770" ], "type": "cell type", "id": "GDS4066_1" }, { "dataset_id": "GDS4066", "description": "PEO4", "sample_id": [ "GSM560771", "GSM560773", "GSM560774", "GSM560760", "GSM560764", "GSM560765", "GSM560772" ], "type": "cell type", "id": "GDS4066_2" }, { "dataset_id": "GDS4066", "description": "ER negative", "sample_id": [ "GSM560761", "GSM560766", "GSM560767", "GSM560768", "GSM560762", "GSM560763", "GSM560769", "GSM560770" ], "type": "genotype/variation", "id": "GDS4066_3" }, { "dataset_id": "GDS4066", "description": "ER positive", "sample_id": [ "GSM560771", "GSM560773", "GSM560774", "GSM560760", "GSM560764", "GSM560765", "GSM560772" ], "type": "genotype/variation", "id": "GDS4066_4" }, { "dataset_id": "GDS4066", "description": "estrogen", "sample_id": [ "GSM560762", "GSM560763", "GSM560769", "GSM560770", "GSM560760", "GSM560764", "GSM560765", "GSM560772" ], "type": "agent", "id": "GDS4066_5" }, { "dataset_id": "GDS4066", "description": "placebo control", "sample_id": [ "GSM560761", "GSM560766", "GSM560767", "GSM560768", "GSM560771", "GSM560773", "GSM560774" ], "type": "agent", "id": "GDS4066_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4066", "version": 1.0, "instances": "15", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4066.tab", "compression": "gz" } ], [ [ "GDS4067.tab" ], { "title": "Metastatic hybrid cell line of estrogen receptor-negative and -positive breast cancer cells in mouse bone marrow", "description": "Analysis of estrogen-independent, metastatic hybrid cell line B6TC generated by aggressive, ER-negative (MDA231) and less aggressive, ER-positive (ZR75) breast cancer cells in mouse bone marrow. Results provide insight into the contribution of breast tumor heterogeneity to its progression.", "type": "Expression profiling by array", "pubmed_id": "21673810", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE27515", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4067", "description": "ER negative MDA-MB-231/GFP/Neo", "sample_id": [ "GSM679722", "GSM679723", "GSM679724" ], "type": "genotype/variation", "id": "GDS4067_1" }, { "dataset_id": "GDS4067", "description": "ER positive ZR-75-1/GFP/puro", "sample_id": [ "GSM679725", "GSM679726", "GSM679727" ], "type": "genotype/variation", "id": "GDS4067_2" }, { "dataset_id": "GDS4067", "description": "GFP+ and estrogen-independent", "sample_id": [ "GSM679719", "GSM679720", "GSM679721" ], "type": "genotype/variation", "id": "GDS4067_3" }, { "dataset_id": "GDS4067", "description": "B6TC hybrid", "sample_id": [ "GSM679719", "GSM679720", "GSM679721" ], "type": "cell line", "id": "GDS4067_4" }, { "dataset_id": "GDS4067", "description": "MDA231", "sample_id": [ "GSM679722", "GSM679723", "GSM679724" ], "type": "cell line", "id": "GDS4067_5" }, { "dataset_id": "GDS4067", "description": "ZR75", "sample_id": [ "GSM679725", "GSM679726", "GSM679727" ], "type": "cell line", "id": "GDS4067_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4067", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4067.tab", "compression": "gz" } ], [ [ "GDS4069.tab" ], { "title": "Triple negative breast cancer", "description": "Analysis of triple negative breast cancer (TNBC) tumors. TNBC is usually associated with poor outcome, and is characterized by lack of estrogen and progesterone hormone receptors and lack of overexpression of HER2. Results provide insight into the molecular basis of tumorigenesis of TNBC.", "type": "Expression profiling by array", "pubmed_id": "21532620", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE27447", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4069", "description": "triple negative breast cancer", "sample_id": [ "GSM678382", "GSM678378", "GSM678375", "GSM678373", "GSM678369" ], "type": "disease state", "id": "GDS4069_1" }, { "dataset_id": "GDS4069", "description": "non-triple negative breast cancer", "sample_id": [ "GSM678368", "GSM678367", "GSM678366", "GSM678365", "GSM678381", "GSM678380", "GSM678379", "GSM678377", "GSM678376", "GSM678374", "GSM678372", "GSM678364", "GSM678371", "GSM678370" ], "type": "disease state", "id": "GDS4069_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4069", "version": 1.0, "instances": "19", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4069.tab", "compression": "gz" } ], [ [ "GDS4070.tab" ], { "title": "Mutant-p53 and Pin1 depleted MDA-MB-231 breast cancer cells", "description": "Analysis of breast cancer cell line MDA-MB-231 depleted of prolyl isomerase Pin1 or mutant-p53. Pin1 overexpression and p53 mutation associate with poor outcome in breast cancer. Results provide insight into the role of a Pin1/mutant p53 axis in the acquisition of aggressive features by tumor cells.", "type": "Expression profiling by array", "pubmed_id": "21741598", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE26262", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4070", "description": "control", "sample_id": [ "GSM645041", "GSM645042", "GSM645043" ], "type": "genotype/variation", "id": "GDS4070_1" }, { "dataset_id": "GDS4070", "description": "Pin1 depleted", "sample_id": [ "GSM645038", "GSM645039", "GSM645040" ], "type": "genotype/variation", "id": "GDS4070_2" }, { "dataset_id": "GDS4070", "description": "mutant-p53 depleted", "sample_id": [ "GSM645044", "GSM645045", "GSM645046" ], "type": "genotype/variation", "id": "GDS4070_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4070", "version": 1.0, "instances": "9", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4070.tab", "compression": "gz" } ], [ [ "GDS4071.tab" ], { "title": "TGF\u03b21 effect on HMEC-TR mammary epithelial cell line deficient in Smad4 or TIF1\u03b3", "description": "Analysis of HMEC-TR cells silenced for TIF1\u03b3 or Smad4 and treated with TGF\u03b2. A strong EMT increase was observed in TIF1\u03b3-silenced cells after TGF\u03b21 treatment; Smad4 inactivation completely blocked this process. Results show the relationship between TIF1\u03b3 and Smad4 in TGF-\u03b2 signaling and EMT.", "type": "Expression profiling by array", "pubmed_id": "21597466", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE28448", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4071", "description": "TGF\u03b21", "sample_id": [ "GSM703139", "GSM703140", "GSM703141", "GSM703145", "GSM703146", "GSM703147" ], "type": "agent", "id": "GDS4071_1" }, { "dataset_id": "GDS4071", "description": "control", "sample_id": [ "GSM703137", "GSM703138", "GSM703142", "GSM703143", "GSM703144" ], "type": "agent", "id": "GDS4071_2" }, { "dataset_id": "GDS4071", "description": "control", "sample_id": [ "GSM703137", "GSM703142", "GSM703139", "GSM703145" ], "type": "genotype/variation", "id": "GDS4071_3" }, { "dataset_id": "GDS4071", "description": "Smad4 knockdown", "sample_id": [ "GSM703144", "GSM703141", "GSM703147" ], "type": "genotype/variation", "id": "GDS4071_4" }, { "dataset_id": "GDS4071", "description": "TIF1\u03b3 knockdown", "sample_id": [ "GSM703138", "GSM703143", "GSM703140", "GSM703146" ], "type": "genotype/variation", "id": "GDS4071_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4071", "version": 1.0, "instances": "11", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4071.tab", "compression": "gz" } ], [ [ "GDS4074.tab" ], { "title": "Zinc finger transcription factor induced fulvestrant resistant MCF7-R73 breast cancer cell lines", "description": "Analysis of fulvestrant-sensitive MCF7-R73 cells retrovirally induced with various zinc finger transcription factors. Six unique ZF-TFs conferred stable fulvestrant-resistance. Results provide insight into molecular mechanisms underlying acquired fulvestrant-resistance in breast cancer cells.", "type": "Expression profiling by array", "pubmed_id": "21818254", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE27444", "order": "none", "update_date": "Jun 06 2012", "subsets": [ { "dataset_id": "GDS4074", "description": "ZF-TF 83", "sample_id": [ "GSM678325", "GSM678318" ], "type": "genotype/variation", "id": "GDS4074_1" }, { "dataset_id": "GDS4074", "description": "ZF-TF 70", "sample_id": [ "GSM678323", "GSM678316" ], "type": "genotype/variation", "id": "GDS4074_2" }, { "dataset_id": "GDS4074", "description": "ZF-TF 7", "sample_id": [ "GSM678324", "GSM678317" ], "type": "genotype/variation", "id": "GDS4074_3" }, { "dataset_id": "GDS4074", "description": "ZF-TF 64", "sample_id": [ "GSM678322", "GSM678315" ], "type": "genotype/variation", "id": "GDS4074_4" }, { "dataset_id": "GDS4074", "description": "ZF-TF 19", "sample_id": [ "GSM678320", "GSM678314" ], "type": "genotype/variation", "id": "GDS4074_5" }, { "dataset_id": "GDS4074", "description": "ZF-TF 115", "sample_id": [ "GSM678319", "GSM678313" ], "type": "genotype/variation", "id": "GDS4074_6" }, { "dataset_id": "GDS4074", "description": "control", "sample_id": [ "GSM678312", "GSM678321" ], "type": "genotype/variation", "id": "GDS4074_7" }, { "dataset_id": "GDS4074", "description": "first", "sample_id": [ "GSM678312", "GSM678313", "GSM678314", "GSM678315", "GSM678317", "GSM678316", "GSM678318" ], "type": "infection", "id": "GDS4074_8" }, { "dataset_id": "GDS4074", "description": "second", "sample_id": [ "GSM678321", "GSM678319", "GSM678320", "GSM678322", "GSM678324", "GSM678323", "GSM678325" ], "type": "infection", "id": "GDS4074_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4074", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4074.tab", "compression": "gz" } ], [ [ "GDS4077.tab" ], { "title": "Genetically engineered murine models of human breast cancer", "description": "Analysis eight well-characterized genetically engineered mouse (GEM) models of human breast cancer , including MMTV-H-Ras, -Her2/neu, -c-Myc, -PymT, -Wnt1 and C3(1)/SV40 T/t-antigen transgenic mice, BRCA1(fl/fl);p53(+/-);MMTV-cre knock-out mice and the p53(fl/fl);MMTV-cre transplant model.", "type": "Expression profiling by array", "pubmed_id": "21846369", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "transformed count", "reference_series": "GSE23938", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4077", "description": "primary mammary tumor", "sample_id": [ "GSM589959", "GSM589960", "GSM589961", "GSM589962", "GSM589963", "GSM589964", "GSM589965", "GSM589966", "GSM589967", "GSM589968", "GSM589969", "GSM589970", "GSM589971", "GSM589972", "GSM589973", "GSM589974", "GSM589975", "GSM589976", "GSM589977", "GSM589978", "GSM589979", "GSM589980", "GSM589981", "GSM589982", "GSM589983", "GSM589984", "GSM589985", "GSM589986", "GSM589987", "GSM589988", "GSM589989", "GSM589990", "GSM589991", "GSM589992", "GSM589993", "GSM589994", "GSM589995", "GSM589996", "GSM589997", "GSM589998", "GSM589999" ], "type": "tissue", "id": "GDS4077_1" }, { "dataset_id": "GDS4077", "description": "normal mammary gland", "sample_id": [ "GSM590000", "GSM590001", "GSM590002", "GSM590003", "GSM590004" ], "type": "tissue", "id": "GDS4077_2" }, { "dataset_id": "GDS4077", "description": "FVB", "sample_id": [ "GSM589959", "GSM589960", "GSM589961", "GSM589962", "GSM589963", "GSM589964", "GSM589965", "GSM589966", "GSM589967", "GSM589968", "GSM589969", "GSM589970", "GSM589971", "GSM589972", "GSM589973", "GSM589974", "GSM589975", "GSM589976", "GSM589977", "GSM589985", "GSM589986", "GSM589987", "GSM589988", "GSM589994", "GSM589995", "GSM589996", "GSM589997", "GSM589998", "GSM589999", "GSM590000", "GSM590001", "GSM590002", "GSM590003", "GSM590004" ], "type": "strain", "id": "GDS4077_3" }, { "dataset_id": "GDS4077", "description": "129B6/FVB", "sample_id": [ "GSM589989", "GSM589990", "GSM589991", "GSM589992", "GSM589993" ], "type": "strain", "id": "GDS4077_4" }, { "dataset_id": "GDS4077", "description": "Balb/C", "sample_id": [ "GSM589978", "GSM589979", "GSM589980", "GSM589981", "GSM589982", "GSM589983", "GSM589984" ], "type": "strain", "id": "GDS4077_5" }, { "dataset_id": "GDS4077", "description": "GEM model C3(1)SV40 T/t-antigen", "sample_id": [ "GSM589959", "GSM589960", "GSM589961", "GSM589962", "GSM589963" ], "type": "genotype/variation", "id": "GDS4077_6" }, { "dataset_id": "GDS4077", "description": "GEM model MMTV-c-Myc", "sample_id": [ "GSM589964", "GSM589965", "GSM589966", "GSM589967" ], "type": "genotype/variation", "id": "GDS4077_7" }, { "dataset_id": "GDS4077", "description": "GEM model MMTV-Her2/neu", "sample_id": [ "GSM589968", "GSM589969", "GSM589970", "GSM589971", "GSM589972" ], "type": "genotype/variation", "id": "GDS4077_8" }, { "dataset_id": "GDS4077", "description": "GEM model MMTV-H-Ras", "sample_id": [ "GSM589973", "GSM589974", "GSM589975", "GSM589976", "GSM589977" ], "type": "genotype/variation", "id": "GDS4077_9" }, { "dataset_id": "GDS4077", "description": "GEM model p53-/-", "sample_id": [ "GSM589978", "GSM589979", "GSM589980", "GSM589981", "GSM589982", "GSM589983", "GSM589984" ], "type": "genotype/variation", "id": "GDS4077_10" }, { "dataset_id": "GDS4077", "description": "GEM model BRCA1-/-p53+/-", "sample_id": [ "GSM589989", "GSM589990", "GSM589991", "GSM589992", "GSM589993" ], "type": "genotype/variation", "id": "GDS4077_11" }, { "dataset_id": "GDS4077", "description": "GEM model MMTV-Wnt1", "sample_id": [ "GSM589985", "GSM589986", "GSM589987", "GSM589988" ], "type": "genotype/variation", "id": "GDS4077_12" }, { "dataset_id": "GDS4077", "description": "GEM model MMTV-PyMT", "sample_id": [ "GSM589994", "GSM589995", "GSM589996", "GSM589997", "GSM589998", "GSM589999" ], "type": "genotype/variation", "id": "GDS4077_13" }, { "dataset_id": "GDS4077", "description": "control", "sample_id": [ "GSM590000", "GSM590001", "GSM590002", "GSM590003", "GSM590004" ], "type": "genotype/variation", "id": "GDS4077_14" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4077", "version": 1.0, "instances": "46", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4077.tab", "compression": "gz" } ], [ [ "GDS4078.tab" ], { "title": "Acquired paclitaxel-resistant MDA-MB-231 cancer cells response to bexarotene treatment", "description": "Analysis of acquired paclitaxel (PTX)-resistant MDA-MB-231 cells treated with bexarotene-PTX or PTX. Retinoid X receptor-selective agonist bexarotene was efficacious in treating chemo-resistant cancer cells. Results provide insight into bexarotene\u2019s role in overcoming acquired drug resistance.", "type": "Expression profiling by array", "pubmed_id": "21737656", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE12791", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4078", "description": "Paclitaxel-resistant cells", "sample_id": [ "GSM320838", "GSM320842", "GSM320846", "GSM320850", "GSM320839", "GSM320843", "GSM320847", "GSM320851", "GSM320840", "GSM320844", "GSM320848", "GSM320852" ], "type": "cell type", "id": "GDS4078_1" }, { "dataset_id": "GDS4078", "description": "parental cells", "sample_id": [ "GSM320837", "GSM320841", "GSM320845", "GSM320849" ], "type": "cell type", "id": "GDS4078_2" }, { "dataset_id": "GDS4078", "description": "control", "sample_id": [ "GSM320837", "GSM320841", "GSM320845", "GSM320849", "GSM320842", "GSM320846", "GSM320850", "GSM320838" ], "type": "agent", "id": "GDS4078_3" }, { "dataset_id": "GDS4078", "description": "Paclitaxel", "sample_id": [ "GSM320839", "GSM320843", "GSM320847", "GSM320851" ], "type": "agent", "id": "GDS4078_4" }, { "dataset_id": "GDS4078", "description": "Paclitaxel + Bexarotene", "sample_id": [ "GSM320840", "GSM320844", "GSM320848", "GSM320852" ], "type": "agent", "id": "GDS4078_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4078", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4078.tab", "compression": "gz" } ], [ [ "GDS4079.tab" ], { "title": "Breast lipotransfer white adipose tissue CD34+ cells", "description": "Analysis of white adipose tissue (WAT) CD34+ cells from breast lipotransfer aspirates and marrow-derived CD34+ cells from leukapheresis of normal patients. WAT is a rich reservoir of CD45-CD34+ endothelial progenitor cells (EPC). Results provide insight into role of WAT CD34+ cells in cancer growth.", "type": "Expression profiling by array", "pubmed_id": "22052460", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE31415", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4079", "description": "Lipotransfer aspirate CD34+ cells", "sample_id": [ "GSM779418", "GSM779420" ], "type": "cell type", "id": "GDS4079_1" }, { "dataset_id": "GDS4079", "description": "Leukapheresis CD34+ cells", "sample_id": [ "GSM779419", "GSM779421" ], "type": "cell type", "id": "GDS4079_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4079", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4079.tab", "compression": "gz" } ], [ [ "GDS4080.tab" ], { "title": "GATA3 ectopic expression effect on MDA-MB-231 breast cancer cells", "description": "Analysis of MDA-MB-231 cells transduced with a lentivirus expressing GATA3. Luminal transcriptional regulator GATA3 reduces tumorigenicity and metastases of basal triple negative breast cancers (TNBC). Results provide insight into molecular basis of GATA3-mediated reduction of TNBC metastases.", "type": "Expression profiling by array", "pubmed_id": "21892208", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE24249", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4080", "description": "control", "sample_id": [ "GSM596523", "GSM596524", "GSM596525" ], "type": "genotype/variation", "id": "GDS4080_1" }, { "dataset_id": "GDS4080", "description": "GATA3", "sample_id": [ "GSM596526", "GSM596527", "GSM596528" ], "type": "genotype/variation", "id": "GDS4080_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4080", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4080.tab", "compression": "gz" } ], [ [ "GDS4081.tab" ], { "title": "Effect of full-term pregnancy or hormone treatment on inguinal left mammary gland", "description": "Analysis of mammary gland of metestrus Lewis females randomly assigned to 3 groups: control, pregnancy, or hormone (exogenous estrogen and progesterone). Full-term pregnancy or treatment with hormone reduces breast cancer risk. Results provide insight into molecular basis of the protective effect.", "type": "Expression profiling by array", "pubmed_id": "22085904", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE32125", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4081", "description": "control", "sample_id": [ "GSM796392", "GSM796393", "GSM796394", "GSM796395", "GSM796396" ], "type": "protocol", "id": "GDS4081_1" }, { "dataset_id": "GDS4081", "description": "pregnancy", "sample_id": [ "GSM796397", "GSM796398", "GSM796399", "GSM796400", "GSM796401" ], "type": "protocol", "id": "GDS4081_2" }, { "dataset_id": "GDS4081", "description": "hormone treatment", "sample_id": [ "GSM796402", "GSM796403", "GSM796404", "GSM796405", "GSM796406" ], "type": "protocol", "id": "GDS4081_3" }, { "dataset_id": "GDS4081", "description": "no pregnancy", "sample_id": [ "GSM796392", "GSM796393", "GSM796394", "GSM796395", "GSM796396", "GSM796402", "GSM796403", "GSM796404", "GSM796405", "GSM796406" ], "type": "development stage", "id": "GDS4081_4" }, { "dataset_id": "GDS4081", "description": "full-term pregnancy", "sample_id": [ "GSM796397", "GSM796398", "GSM796399", "GSM796400", "GSM796401" ], "type": "development stage", "id": "GDS4081_5" }, { "dataset_id": "GDS4081", "description": "sham capsule", "sample_id": [ "GSM796392", "GSM796393", "GSM796394", "GSM796395", "GSM796396", "GSM796397", "GSM796398", "GSM796399", "GSM796400", "GSM796401" ], "type": "agent", "id": "GDS4081_6" }, { "dataset_id": "GDS4081", "description": "ethynyl estradiol + megesterol acetate", "sample_id": [ "GSM796402", "GSM796403", "GSM796404", "GSM796405", "GSM796406" ], "type": "agent", "id": "GDS4081_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4081", "version": 1.0, "instances": "15", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4081.tab", "compression": "gz" } ], [ [ "GDS4082.tab" ], { "title": "Trans-retinoic acid and hydrocortisone induction of Na+/I- symporter in MCF-7 breast cancer cells", "description": "Analysis of MCF7 cells induced to express endogenous Na+/I- symporter (NIS). NIS expression raises potential for radionuclide therapy of breast cancer. However, NIS expression in most breast cancers is low. Results provide insight into mechanisms underlying NIS modulation in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21989294", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE32161", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4082", "description": "DMSO vehicle", "sample_id": [ "GSM797427", "GSM797430" ], "type": "agent", "id": "GDS4082_1" }, { "dataset_id": "GDS4082", "description": "trans-retinoic acid", "sample_id": [ "GSM797428", "GSM797431" ], "type": "agent", "id": "GDS4082_2" }, { "dataset_id": "GDS4082", "description": "trans-retinoic acid+hydrocortisone", "sample_id": [ "GSM797429", "GSM797432" ], "type": "agent", "id": "GDS4082_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4082", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4082.tab", "compression": "gz" } ], [ [ "GDS4083.tab" ], { "title": "Lapatinib-resistant HER2-positive breast tumor cells", "description": "Analysis of BT474 (lapatinib-sensitive) and BT474-J4 (acquired lapatinib-resistance) HER2+ breast cancer cells treated with lapatinib, foretinib or both. Foretinib restored lapatinib-sensitivity in BT474-J4. Results provide insight into molecular basis of acquired lapatinib-resistance in BC cells.", "type": "Expression profiling by array", "pubmed_id": "19671800", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE16179", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4083", "description": "BT474-J4", "sample_id": [ "GSM799174", "GSM799175", "GSM799176", "GSM799177", "GSM799178", "GSM799179", "GSM799183", "GSM799184", "GSM799185", "GSM799180", "GSM799181", "GSM799182" ], "type": "cell line", "id": "GDS4083_1" }, { "dataset_id": "GDS4083", "description": "BT474", "sample_id": [ "GSM799168", "GSM799169", "GSM799170", "GSM799171", "GSM799172", "GSM799173" ], "type": "cell line", "id": "GDS4083_2" }, { "dataset_id": "GDS4083", "description": "acquired lapatinib-resistance", "sample_id": [ "GSM799174", "GSM799175", "GSM799176", "GSM799177", "GSM799178", "GSM799179", "GSM799183", "GSM799184", "GSM799185", "GSM799180", "GSM799181", "GSM799182" ], "type": "genotype/variation", "id": "GDS4083_3" }, { "dataset_id": "GDS4083", "description": "lapatinib-sensitivity", "sample_id": [ "GSM799168", "GSM799169", "GSM799170", "GSM799171", "GSM799172", "GSM799173" ], "type": "genotype/variation", "id": "GDS4083_4" }, { "dataset_id": "GDS4083", "description": "control", "sample_id": [ "GSM799170", "GSM799169", "GSM799168", "GSM799176", "GSM799175", "GSM799174" ], "type": "agent", "id": "GDS4083_5" }, { "dataset_id": "GDS4083", "description": "lapatinib", "sample_id": [ "GSM799173", "GSM799172", "GSM799171", "GSM799182", "GSM799181", "GSM799180" ], "type": "agent", "id": "GDS4083_6" }, { "dataset_id": "GDS4083", "description": "foretinib", "sample_id": [ "GSM799179", "GSM799178", "GSM799177" ], "type": "agent", "id": "GDS4083_7" }, { "dataset_id": "GDS4083", "description": "lapatinib + foretinib", "sample_id": [ "GSM799185", "GSM799184", "GSM799183" ], "type": "agent", "id": "GDS4083_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4083", "version": 1.0, "instances": "18", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4083.tab", "compression": "gz" } ], [ [ "GDS4084.tab" ], { "title": "Doxorubicin-resistant MCF-7/ADR breast cancer cells", "description": "Analysis of weakly tumorigenic parental MCF-7 cells and a multistep doxorubicin-selected MCF-7/ADR subline. Results provide insight into whether prolonged continuous selection of cells for drug resistance enriches for cancer stem-like cells.", "type": "Expression profiling by array", "pubmed_id": "20935265", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE24460", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4084", "description": "MCF-7", "sample_id": [ "GSM602658", "GSM602659" ], "type": "cell line", "id": "GDS4084_1" }, { "dataset_id": "GDS4084", "description": "MCF-7/ADR", "sample_id": [ "GSM602660", "GSM602661" ], "type": "cell line", "id": "GDS4084_2" }, { "dataset_id": "GDS4084", "description": "parental control", "sample_id": [ "GSM602658", "GSM602659" ], "type": "genotype/variation", "id": "GDS4084_3" }, { "dataset_id": "GDS4084", "description": "multi-step doxorubicin-selected", "sample_id": [ "GSM602660", "GSM602661" ], "type": "genotype/variation", "id": "GDS4084_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4084", "version": 1.0, "instances": "4", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4084.tab", "compression": "gz" } ], [ [ "GDS4085.tab" ], { "title": "Estrogen receptor-positive and -negative breast cancer tumors", "description": "Analysis of primary breast carcinoma tumors from estrogen receptor positive or negative (ER+/-) patients. ER+ tumors tend to metastasize to the bone while ER- tumors tend to induce visceral metastasis. Results provide insight into molecular basis of different metastatic phenotypes in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "22025563", "platform": "GPL11097", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1259", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE32394", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4085", "description": "estrogen receptor-positive", "sample_id": [ "GSM801846", "GSM801848", "GSM801847", "GSM801851", "GSM801849", "GSM801843", "GSM801845", "GSM801844", "GSM801850" ], "type": "genotype/variation", "id": "GDS4085_1" }, { "dataset_id": "GDS4085", "description": "estrogen receptor-negative", "sample_id": [ "GSM801852", "GSM801861", "GSM801859", "GSM801854", "GSM801855", "GSM801857", "GSM801860", "GSM801853", "GSM801858", "GSM801856" ], "type": "genotype/variation", "id": "GDS4085_2" } ], "taxid": "9606", "genes": 1131, "aggregation_function": "mean", "name": "GDS4085", "version": 1.0, "instances": "19", "variables": 1133, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4085.tab", "compression": "gz" } ], [ [ "GDS4088.tab" ], { "title": "Variable breast cancer tumor sample collection methods", "description": "Analysis of breast tumor samples preserved using 2 different RNA stabilization methods (RNAlater or snap freezing) up to 3 hours post tumor excision. Results provide insight into the effects of tissue handling on RNA integrity and microarray measurements from resected breast cancers.", "type": "Expression profiling by array", "pubmed_id": "22034635", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "86", "value_type": "transformed count", "reference_series": "GSE25011", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4088", "description": "MD40", "sample_id": [ "GSM614415", "GSM614419", "GSM614420", "GSM614416", "GSM614417", "GSM614418" ], "type": "individual", "id": "GDS4088_1" }, { "dataset_id": "GDS4088", "description": "MD49", "sample_id": [ "GSM614421", "GSM614427", "GSM614425", "GSM614426", "GSM614422", "GSM614423", "GSM614428", "GSM614424" ], "type": "individual", "id": "GDS4088_2" }, { "dataset_id": "GDS4088", "description": "MD50", "sample_id": [ "GSM614429", "GSM614435", "GSM614433", "GSM614434", "GSM614430", "GSM614431", "GSM614436", "GSM614432" ], "type": "individual", "id": "GDS4088_3" }, { "dataset_id": "GDS4088", "description": "MD52", "sample_id": [ "GSM614437", "GSM614443", "GSM614441", "GSM614442", "GSM614438", "GSM614439", "GSM614444", "GSM614440" ], "type": "individual", "id": "GDS4088_4" }, { "dataset_id": "GDS4088", "description": "MD53", "sample_id": [ "GSM614391", "GSM614397", "GSM614395", "GSM614396", "GSM614392", "GSM614393", "GSM614398", "GSM614394" ], "type": "individual", "id": "GDS4088_5" }, { "dataset_id": "GDS4088", "description": "MD57", "sample_id": [ "GSM614399", "GSM614405", "GSM614403", "GSM614404", "GSM614400", "GSM614401", "GSM614406", "GSM614402" ], "type": "individual", "id": "GDS4088_6" }, { "dataset_id": "GDS4088", "description": "MD64", "sample_id": [ "GSM614407", "GSM614413", "GSM614411", "GSM614412", "GSM614408", "GSM614409", "GSM614414", "GSM614410" ], "type": "individual", "id": "GDS4088_7" }, { "dataset_id": "GDS4088", "description": "MD66", "sample_id": [ "GSM614445", "GSM614451", "GSM614449", "GSM614450", "GSM614446", "GSM614447", "GSM614452", "GSM614448" ], "type": "individual", "id": "GDS4088_8" }, { "dataset_id": "GDS4088", "description": "MD67", "sample_id": [ "GSM614453", "GSM614459", "GSM614457", "GSM614458", "GSM614454", "GSM614455", "GSM614460", "GSM614456" ], "type": "individual", "id": "GDS4088_9" }, { "dataset_id": "GDS4088", "description": "MD69", "sample_id": [ "GSM614461", "GSM614467", "GSM614465", "GSM614466", "GSM614462", "GSM614463", "GSM614468", "GSM614464" ], "type": "individual", "id": "GDS4088_10" }, { "dataset_id": "GDS4088", "description": "MD71", "sample_id": [ "GSM614469", "GSM614475", "GSM614473", "GSM614474", "GSM614470", "GSM614471", "GSM614476", "GSM614472" ], "type": "individual", "id": "GDS4088_11" }, { "dataset_id": "GDS4088", "description": "RNAlater", "sample_id": [ "GSM614391", "GSM614392", "GSM614393", "GSM614394", "GSM614395", "GSM614396", "GSM614399", "GSM614400", "GSM614401", "GSM614402", "GSM614403", "GSM614404", "GSM614407", "GSM614408", "GSM614409", "GSM614410", "GSM614411", "GSM614412", "GSM614415", "GSM614416", "GSM614417", "GSM614418", "GSM614419", "GSM614420", "GSM614421", "GSM614422", "GSM614423", "GSM614424", "GSM614425", "GSM614426", "GSM614429", "GSM614430", "GSM614431", "GSM614432", "GSM614433", "GSM614434", "GSM614437", "GSM614438", "GSM614439", "GSM614440", "GSM614441", "GSM614442", "GSM614445", "GSM614446", "GSM614447", "GSM614448", "GSM614449", "GSM614450", "GSM614453", "GSM614454", "GSM614455", "GSM614456", "GSM614457", "GSM614458", "GSM614461", "GSM614462", "GSM614463", "GSM614464", "GSM614465", "GSM614466", "GSM614469", "GSM614470", "GSM614471", "GSM614472", "GSM614473", "GSM614474" ], "type": "protocol", "id": "GDS4088_12" }, { "dataset_id": "GDS4088", "description": "flash frozen", "sample_id": [ "GSM614397", "GSM614398", "GSM614405", "GSM614406", "GSM614413", "GSM614414", "GSM614427", "GSM614428", "GSM614435", "GSM614436", "GSM614443", "GSM614444", "GSM614451", "GSM614452", "GSM614459", "GSM614460", "GSM614467", "GSM614468", "GSM614475", "GSM614476" ], "type": "protocol", "id": "GDS4088_13" }, { "dataset_id": "GDS4088", "description": "baseline", "sample_id": [ "GSM614391", "GSM614397", "GSM614405", "GSM614407", "GSM614413", "GSM614415", "GSM614421", "GSM614427", "GSM614429", "GSM614435", "GSM614437", "GSM614443", "GSM614445", "GSM614451", "GSM614453", "GSM614459", "GSM614461", "GSM614467", "GSM614469", "GSM614475", "GSM614399" ], "type": "time", "id": "GDS4088_14" }, { "dataset_id": "GDS4088", "description": "20 min", "sample_id": [ "GSM614392", "GSM614400", "GSM614408", "GSM614416", "GSM614422", "GSM614430", "GSM614438", "GSM614446", "GSM614454", "GSM614462", "GSM614470" ], "type": "time", "id": "GDS4088_15" }, { "dataset_id": "GDS4088", "description": "40 min", "sample_id": [ "GSM614393", "GSM614398", "GSM614401", "GSM614406", "GSM614409", "GSM614414", "GSM614417", "GSM614423", "GSM614428", "GSM614431", "GSM614436", "GSM614439", "GSM614444", "GSM614447", "GSM614452", "GSM614455", "GSM614460", "GSM614463", "GSM614468", "GSM614471", "GSM614476" ], "type": "time", "id": "GDS4088_16" }, { "dataset_id": "GDS4088", "description": "60 min", "sample_id": [ "GSM614394", "GSM614402", "GSM614410", "GSM614418", "GSM614424", "GSM614432", "GSM614440", "GSM614448", "GSM614456", "GSM614464", "GSM614472" ], "type": "time", "id": "GDS4088_17" }, { "dataset_id": "GDS4088", "description": "120 min", "sample_id": [ "GSM614395", "GSM614403", "GSM614411", "GSM614419", "GSM614425", "GSM614433", "GSM614441", "GSM614449", "GSM614457", "GSM614465", "GSM614473" ], "type": "time", "id": "GDS4088_18" }, { "dataset_id": "GDS4088", "description": "180 min", "sample_id": [ "GSM614396", "GSM614404", "GSM614412", "GSM614420", "GSM614426", "GSM614434", "GSM614442", "GSM614450", "GSM614458", "GSM614466", "GSM614474" ], "type": "time", "id": "GDS4088_19" }, { "dataset_id": "GDS4088", "description": "RIN 3.3", "sample_id": [ "GSM614406" ], "type": "other", "id": "GDS4088_20" }, { "dataset_id": "GDS4088", "description": "RIN 4.3", "sample_id": [ "GSM614438" ], "type": "other", "id": "GDS4088_21" }, { "dataset_id": "GDS4088", "description": "RIN 4.7", "sample_id": [ "GSM614451" ], "type": "other", "id": "GDS4088_22" }, { "dataset_id": "GDS4088", "description": "RIN 4.9", "sample_id": [ "GSM614452" ], "type": "other", "id": "GDS4088_23" }, { "dataset_id": "GDS4088", "description": "RIN 5.0", "sample_id": [ "GSM614397", "GSM614398" ], "type": "other", "id": "GDS4088_24" }, { "dataset_id": "GDS4088", "description": "RIN 5.4", "sample_id": [ "GSM614441" ], "type": "other", "id": "GDS4088_25" }, { "dataset_id": "GDS4088", "description": "RIN 5.5", "sample_id": [ "GSM614405" ], "type": "other", "id": "GDS4088_26" }, { "dataset_id": "GDS4088", "description": "RIN 6.1", "sample_id": [ "GSM614440", "GSM614447" ], "type": "other", "id": "GDS4088_27" }, { "dataset_id": "GDS4088", "description": "RIN 6.3", "sample_id": [ "GSM614445" ], "type": "other", "id": "GDS4088_28" }, { "dataset_id": "GDS4088", "description": "RIN 6.4", "sample_id": [ "GSM614396", "GSM614414", "GSM614446" ], "type": "other", "id": "GDS4088_29" }, { "dataset_id": "GDS4088", "description": "RIN 6.5", "sample_id": [ "GSM614395", "GSM614402", "GSM614403" ], "type": "other", "id": "GDS4088_30" }, { "dataset_id": "GDS4088", "description": "RIN 6.6", "sample_id": [ "GSM614393", "GSM614449" ], "type": "other", "id": "GDS4088_31" }, { "dataset_id": "GDS4088", "description": "RIN 6.7", "sample_id": [ "GSM614394", "GSM614413", "GSM614426", "GSM614448" ], "type": "other", "id": "GDS4088_32" }, { "dataset_id": "GDS4088", "description": "RIN 6.8", "sample_id": [ "GSM614404", "GSM614467" ], "type": "other", "id": "GDS4088_33" }, { "dataset_id": "GDS4088", "description": "RIN 6.9", "sample_id": [ "GSM614400", "GSM614422", "GSM614425", "GSM614427", "GSM614465" ], "type": "other", "id": "GDS4088_34" }, { "dataset_id": "GDS4088", "description": "RIN 7.0", "sample_id": [ "GSM614392", "GSM614411", "GSM614428", "GSM614468" ], "type": "other", "id": "GDS4088_35" }, { "dataset_id": "GDS4088", "description": "RIN 7.1", "sample_id": [ "GSM614399", "GSM614412", "GSM614421", "GSM614423", "GSM614475" ], "type": "other", "id": "GDS4088_36" }, { "dataset_id": "GDS4088", "description": "RIN 7.2", "sample_id": [ "GSM614401", "GSM614424" ], "type": "other", "id": "GDS4088_37" }, { "dataset_id": "GDS4088", "description": "RIN 7.3", "sample_id": [ "GSM614450", "GSM614476" ], "type": "other", "id": "GDS4088_38" }, { "dataset_id": "GDS4088", "description": "RIN 7.4", "sample_id": [ "GSM614419" ], "type": "other", "id": "GDS4088_39" }, { "dataset_id": "GDS4088", "description": "RIN 7.7", "sample_id": [ "GSM614391", "GSM614439" ], "type": "other", "id": "GDS4088_40" }, { "dataset_id": "GDS4088", "description": "RIN 7.8", "sample_id": [ "GSM614408", "GSM614460" ], "type": "other", "id": "GDS4088_41" }, { "dataset_id": "GDS4088", "description": "RIN 7.9", "sample_id": [ "GSM614409", "GSM614435", "GSM614454", "GSM614464" ], "type": "other", "id": "GDS4088_42" }, { "dataset_id": "GDS4088", "description": "RIN 8.0", "sample_id": [ "GSM614420", "GSM614456" ], "type": "other", "id": "GDS4088_43" }, { "dataset_id": "GDS4088", "description": "RIN 8.2", "sample_id": [ "GSM614436" ], "type": "other", "id": "GDS4088_44" }, { "dataset_id": "GDS4088", "description": "RIN 8.3", "sample_id": [ "GSM614407", "GSM614455", "GSM614458" ], "type": "other", "id": "GDS4088_45" }, { "dataset_id": "GDS4088", "description": "RIN 8.4", "sample_id": [ "GSM614432", "GSM614434", "GSM614472" ], "type": "other", "id": "GDS4088_46" }, { "dataset_id": "GDS4088", "description": "RIN 8.5", "sample_id": [ "GSM614417", "GSM614453", "GSM614461", "GSM614474" ], "type": "other", "id": "GDS4088_47" }, { "dataset_id": "GDS4088", "description": "RIN 8.6", "sample_id": [ "GSM614415", "GSM614416", "GSM614429", "GSM614430", "GSM614437", "GSM614459", "GSM614462" ], "type": "other", "id": "GDS4088_48" }, { "dataset_id": "GDS4088", "description": "RIN 8.7", "sample_id": [ "GSM614410", "GSM614418", "GSM614433", "GSM614443", "GSM614471" ], "type": "other", "id": "GDS4088_49" }, { "dataset_id": "GDS4088", "description": "RIN 8.8", "sample_id": [ "GSM614431", "GSM614457", "GSM614463", "GSM614466" ], "type": "other", "id": "GDS4088_50" }, { "dataset_id": "GDS4088", "description": "RIN 8.9", "sample_id": [ "GSM614470" ], "type": "other", "id": "GDS4088_51" }, { "dataset_id": "GDS4088", "description": "RIN 9.0", "sample_id": [ "GSM614442" ], "type": "other", "id": "GDS4088_52" }, { "dataset_id": "GDS4088", "description": "RIN 9.1", "sample_id": [ "GSM614444" ], "type": "other", "id": "GDS4088_53" }, { "dataset_id": "GDS4088", "description": "RIN 9.2", "sample_id": [ "GSM614469", "GSM614473" ], "type": "other", "id": "GDS4088_54" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4088", "version": 1.0, "instances": "86", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4088.tab", "compression": "gz" } ], [ [ "GDS4089.tab" ], { "title": "Proteasome inhibitor Bortezomib effect on MCF7 breast cancer cells", "description": "Analysis of MCF7 cells stimulated with bortezomib (velcade). Proteasome inhibition can regulate estrogen-induced transcription. Results provide insight into the mechanisms by which proteasome inhibition influences ER\u03b1 function and may uncover improved strategies for the treatment of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21862633", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE30931", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4089", "description": "control", "sample_id": [ "GSM766676", "GSM766677", "GSM766678" ], "type": "agent", "id": "GDS4089_1" }, { "dataset_id": "GDS4089", "description": "Bortezomib (Velcade)", "sample_id": [ "GSM766682", "GSM766683", "GSM766684" ], "type": "agent", "id": "GDS4089_2" }, { "dataset_id": "GDS4089", "description": "Bortezomib (Velcade) + Estrogen", "sample_id": [ "GSM766685", "GSM766686", "GSM766687" ], "type": "agent", "id": "GDS4089_3" }, { "dataset_id": "GDS4089", "description": "Estrogen", "sample_id": [ "GSM766679", "GSM766680", "GSM766681" ], "type": "agent", "id": "GDS4089_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4089", "version": 1.0, "instances": "12", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4089.tab", "compression": "gz" } ], [ [ "GDS409.tab" ], { "title": "Spermatogenesis time course (MG-U74B)", "description": "Analysis of C57BL/6 testis from day 1 to adult. Determination of transcripts expressed specifically by male germ cells late in spermatogenesis (postmeiotic) reveals many candidates for contraceptive targeting and fertilization participants.", "type": "Expression profiling by array", "pubmed_id": "14526100", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE640", "order": "none", "update_date": "Apr 29 2015", "subsets": [ { "dataset_id": "GDS409", "description": "1 day", "sample_id": [ "GSM9869", "GSM9872", "GSM9875" ], "type": "age", "id": "GDS409_1" }, { "dataset_id": "GDS409", "description": "4 day", "sample_id": [ "GSM9878", "GSM9881" ], "type": "age", "id": "GDS409_2" }, { "dataset_id": "GDS409", "description": "8 day", "sample_id": [ "GSM9884", "GSM9887" ], "type": "age", "id": "GDS409_3" }, { "dataset_id": "GDS409", "description": "11 day", "sample_id": [ "GSM9890", "GSM9893" ], "type": "age", "id": "GDS409_4" }, { "dataset_id": "GDS409", "description": "14 day", "sample_id": [ "GSM9896" ], "type": "age", "id": "GDS409_5" }, { "dataset_id": "GDS409", "description": "18 day", "sample_id": [ "GSM9899" ], "type": "age", "id": "GDS409_6" }, { "dataset_id": "GDS409", "description": "19 day", "sample_id": [ "GSM9911", "GSM9914" ], "type": "age", "id": "GDS409_7" }, { "dataset_id": "GDS409", "description": "21 day", "sample_id": [ "GSM9902" ], "type": "age", "id": "GDS409_8" }, { "dataset_id": "GDS409", "description": "26 day", "sample_id": [ "GSM9905" ], "type": "age", "id": "GDS409_9" }, { "dataset_id": "GDS409", "description": "29 day", "sample_id": [ "GSM9908" ], "type": "age", "id": "GDS409_10" }, { "dataset_id": "GDS409", "description": "adult", "sample_id": [ "GSM9866" ], "type": "age", "id": "GDS409_11" }, { "dataset_id": "GDS409", "description": "testis", "sample_id": [ "GSM9869", "GSM9872", "GSM9875", "GSM9878", "GSM9881", "GSM9884", "GSM9887", "GSM9890", "GSM9893", "GSM9896", "GSM9899", "GSM9902", "GSM9905", "GSM9908", "GSM9866" ], "type": "tissue", "id": "GDS409_12" }, { "dataset_id": "GDS409", "description": "testis, interstitial cells", "sample_id": [ "GSM9911" ], "type": "tissue", "id": "GDS409_13" }, { "dataset_id": "GDS409", "description": "testis, tubular somatic cells", "sample_id": [ "GSM9914" ], "type": "tissue", "id": "GDS409_14" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS409", "version": 1.0, "instances": "17", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS409.tab", "compression": "gz" } ], [ [ "GDS4090.tab" ], { "title": "Proteasome inhibitor Bortezomib or proteasome subunit knockdown effect on MCF7 breast cancer cells", "description": "Analysis of MCF7 cells stimulated with bortezomib or depleted of PSMB3 or PSMB5. Proteasome inhibition can regulate estrogen-induced transcription. Results provide insight into mechanisms by which proteasome inhibition influences ER\u03b1 function and into improved strategies for breast cancer treatment", "type": "Expression profiling by array", "pubmed_id": "21862633", "platform": "GPL14010", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "19628", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE31118", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4090", "description": "proteasome inhibition by drug", "sample_id": [ "GSM770571", "GSM770572", "GSM770573", "GSM770574", "GSM770575", "GSM770576", "GSM770577", "GSM770578", "GSM770579" ], "type": "protocol", "id": "GDS4090_1" }, { "dataset_id": "GDS4090", "description": "proteasome inhibition by siRNA knockdown", "sample_id": [ "GSM770580", "GSM770581", "GSM770582", "GSM770583", "GSM770584", "GSM770585", "GSM770586", "GSM770587", "GSM770588", "GSM770589", "GSM770590", "GSM770591" ], "type": "protocol", "id": "GDS4090_2" }, { "dataset_id": "GDS4090", "description": "control", "sample_id": [ "GSM770571", "GSM770572", "GSM770573" ], "type": "agent", "id": "GDS4090_3" }, { "dataset_id": "GDS4090", "description": "Estrogen", "sample_id": [ "GSM770574", "GSM770575", "GSM770576" ], "type": "agent", "id": "GDS4090_4" }, { "dataset_id": "GDS4090", "description": "Bortezomib (Velcade) + Estrogen", "sample_id": [ "GSM770577", "GSM770578", "GSM770579" ], "type": "agent", "id": "GDS4090_5" }, { "dataset_id": "GDS4090", "description": "NA", "sample_id": [ "GSM770580", "GSM770581", "GSM770582", "GSM770583", "GSM770584", "GSM770585", "GSM770586", "GSM770587", "GSM770588", "GSM770589", "GSM770590", "GSM770591" ], "type": "agent", "id": "GDS4090_6" }, { "dataset_id": "GDS4090", "description": "control", "sample_id": [ "GSM770571", "GSM770572", "GSM770573", "GSM770574", "GSM770575", "GSM770576", "GSM770577", "GSM770578", "GSM770579" ], "type": "genotype/variation", "id": "GDS4090_7" }, { "dataset_id": "GDS4090", "description": "siRNA control 1", "sample_id": [ "GSM770580", "GSM770581", "GSM770582" ], "type": "genotype/variation", "id": "GDS4090_8" }, { "dataset_id": "GDS4090", "description": "siRNA control 2", "sample_id": [ "GSM770583", "GSM770584", "GSM770585" ], "type": "genotype/variation", "id": "GDS4090_9" }, { "dataset_id": "GDS4090", "description": "siRNA PSMB3", "sample_id": [ "GSM770586", "GSM770587", "GSM770588" ], "type": "genotype/variation", "id": "GDS4090_10" }, { "dataset_id": "GDS4090", "description": "siRNA PSMB5", "sample_id": [ "GSM770589", "GSM770590", "GSM770591" ], "type": "genotype/variation", "id": "GDS4090_11" } ], "taxid": "9606", "genes": 19627, "aggregation_function": "mean", "name": "GDS4090", "version": 1.0, "instances": "21", "variables": 19631, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4090.tab", "compression": "gz" } ], [ [ "GDS4091.tab" ], { "title": "Cancer stem cell population in highly metastatic variants of MDA-MB-231 breast cancer cell line", "description": "Analysis of CD24-/CD44+/ESA+ cancer stem cells from MDA-MB-231 breast cancer (BC) cell line and its highly metastatic variants 231BoM-1833 and 231BrM-2a. The majority of BC deaths are attributed to metastatic disease. Results provide insight into the molecular basis of metastatic progression.", "type": "Expression profiling by array", "pubmed_id": "22113945", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE25976", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4091", "description": "parental", "sample_id": [ "GSM637872", "GSM637873" ], "type": "genotype/variation", "id": "GDS4091_1" }, { "dataset_id": "GDS4091", "description": "metastatic variant", "sample_id": [ "GSM637874", "GSM637875", "GSM637876", "GSM637877" ], "type": "genotype/variation", "id": "GDS4091_2" }, { "dataset_id": "GDS4091", "description": "MDA-MB-231", "sample_id": [ "GSM637872", "GSM637873" ], "type": "cell line", "id": "GDS4091_3" }, { "dataset_id": "GDS4091", "description": "231BoM-1833", "sample_id": [ "GSM637874", "GSM637875" ], "type": "cell line", "id": "GDS4091_4" }, { "dataset_id": "GDS4091", "description": "231BrM-2a", "sample_id": [ "GSM637876", "GSM637877" ], "type": "cell line", "id": "GDS4091_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4091", "version": 1.0, "instances": "6", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4091.tab", "compression": "gz" } ], [ [ "GDS4092.tab" ], { "title": "Breast cancer cell lines treated with methylated or unmethylated DNA oligos", "description": "Analysis of breast cancer cell lines BT-20 and Hs578T treated with methylated or un-methylated CpG DNA oligos: CDH13 and ODN 2006. Results provide insight into molecular mechanisms triggered by methylated, but not by unmethylated DNA, that could be involved in tumour biology.", "type": "Expression profiling by array", "pubmed_id": "22108517", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22865", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4092", "description": "BT-20", "sample_id": [ "GSM564960", "GSM564961", "GSM564952", "GSM564953", "GSM564958", "GSM564959" ], "type": "cell line", "id": "GDS4092_1" }, { "dataset_id": "GDS4092", "description": "Hs578T", "sample_id": [ "GSM564956", "GSM564957", "GSM564950", "GSM564951", "GSM564954", "GSM564955" ], "type": "cell line", "id": "GDS4092_2" }, { "dataset_id": "GDS4092", "description": "ODN 2006", "sample_id": [ "GSM564960", "GSM564956" ], "type": "agent", "id": "GDS4092_3" }, { "dataset_id": "GDS4092", "description": "ODN 2006 CTL", "sample_id": [ "GSM564961", "GSM564957" ], "type": "agent", "id": "GDS4092_4" }, { "dataset_id": "GDS4092", "description": "CDH13 M", "sample_id": [ "GSM564952", "GSM564958", "GSM564950", "GSM564954" ], "type": "agent", "id": "GDS4092_5" }, { "dataset_id": "GDS4092", "description": "CDH13 U", "sample_id": [ "GSM564953", "GSM564959", "GSM564951", "GSM564955" ], "type": "agent", "id": "GDS4092_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4092", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4092.tab", "compression": "gz" } ], [ [ "GDS4093.tab" ], { "title": "Anastrozole/Fulvestrant/Gefitinib neoadjuvant therapy of estrogen receptor positive breast cancer patients: tumor core biopsies", "description": "Analysis of pre and post (3 wk) tumor core biopsies of postmenopausal women with ER+, HER2- breast cancer (BC) in neoadjuvant trial of anastrozole and fulvestrant with/without gefitinib. Results provide insight into mechanisms of resistance and inhibition of hormone receptors targeted in BC therapy.", "type": "Expression profiling by array", "pubmed_id": "21792626", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE33658", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4093", "description": "pre-treatment", "sample_id": [ "GSM832390", "GSM832392", "GSM832394", "GSM832396", "GSM832398", "GSM832400", "GSM832402", "GSM832404", "GSM832406", "GSM832408", "GSM832410" ], "type": "protocol", "id": "GDS4093_1" }, { "dataset_id": "GDS4093", "description": "post-treatment", "sample_id": [ "GSM832391", "GSM832393", "GSM832395", "GSM832397", "GSM832399", "GSM832401", "GSM832403", "GSM832405", "GSM832407", "GSM832409", "GSM832411" ], "type": "protocol", "id": "GDS4093_2" }, { "dataset_id": "GDS4093", "description": "AF", "sample_id": [ "GSM832390", "GSM832391", "GSM832392", "GSM832393", "GSM832394", "GSM832395", "GSM832396", "GSM832397", "GSM832398", "GSM832399" ], "type": "agent", "id": "GDS4093_3" }, { "dataset_id": "GDS4093", "description": "AFG", "sample_id": [ "GSM832400", "GSM832401", "GSM832402", "GSM832403", "GSM832404", "GSM832405", "GSM832406", "GSM832407", "GSM832408", "GSM832409", "GSM832410", "GSM832411" ], "type": "agent", "id": "GDS4093_4" }, { "dataset_id": "GDS4093", "description": "complete response", "sample_id": [ "GSM832400", "GSM832401", "GSM832402", "GSM832403" ], "type": "disease state", "id": "GDS4093_5" }, { "dataset_id": "GDS4093", "description": "partial response", "sample_id": [ "GSM832392", "GSM832393", "GSM832406", "GSM832407", "GSM832408", "GSM832409" ], "type": "disease state", "id": "GDS4093_6" }, { "dataset_id": "GDS4093", "description": "stable disease", "sample_id": [ "GSM832394", "GSM832395", "GSM832396", "GSM832397", "GSM832398", "GSM832399", "GSM832410", "GSM832411" ], "type": "disease state", "id": "GDS4093_7" }, { "dataset_id": "GDS4093", "description": "progressive disease", "sample_id": [ "GSM832390", "GSM832391", "GSM832404", "GSM832405" ], "type": "disease state", "id": "GDS4093_8" }, { "dataset_id": "GDS4093", "description": "PRG receptor -", "sample_id": [ "GSM832398", "GSM832399", "GSM832408", "GSM832409" ], "type": "specimen", "id": "GDS4093_9" }, { "dataset_id": "GDS4093", "description": "PRG receptor +", "sample_id": [ "GSM832410", "GSM832411", "GSM832400", "GSM832401", "GSM832402", "GSM832403", "GSM832404", "GSM832405", "GSM832406", "GSM832407", "GSM832390", "GSM832391", "GSM832392", "GSM832393", "GSM832394", "GSM832395", "GSM832396", "GSM832397" ], "type": "specimen", "id": "GDS4093_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4093", "version": 1.0, "instances": "22", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4093.tab", "compression": "gz" } ], [ [ "GDS4094.tab" ], { "title": "E2F transcription factor knockdown effect on Myc-induced mammary tumors", "description": "Analysis of MMTV-Myc tumors generated in an E2F wild-type, E2F1 null, E2F2 null or E2F3 heterozygous background. E2Fs are Myc transcriptional activators shown to regulate proliferation and apoptosis. Results provide insight into role of E2Fs in Myc-induced breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21245101", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "80", "value_type": "count", "reference_series": "GSE24594", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4094", "description": "E2F wild type", "sample_id": [ "GSM606143", "GSM606144", "GSM606145", "GSM606146", "GSM606147", "GSM606148", "GSM606149", "GSM606150", "GSM606151", "GSM606152", "GSM606153", "GSM606154", "GSM606155", "GSM606156", "GSM606157", "GSM606158", "GSM606159", "GSM606160", "GSM606161", "GSM606162" ], "type": "genotype/variation", "id": "GDS4094_1" }, { "dataset_id": "GDS4094", "description": "E2F1 null", "sample_id": [ "GSM606163", "GSM606164", "GSM606165", "GSM606166", "GSM606167", "GSM606168", "GSM606169", "GSM606170", "GSM606171", "GSM606172", "GSM606173", "GSM606174", "GSM606175", "GSM606176", "GSM606177", "GSM606178", "GSM606179", "GSM606180", "GSM606181", "GSM606182" ], "type": "genotype/variation", "id": "GDS4094_2" }, { "dataset_id": "GDS4094", "description": "E2F2 null", "sample_id": [ "GSM606183", "GSM606184", "GSM606185", "GSM606186", "GSM606187", "GSM606188", "GSM606189", "GSM606190", "GSM606191", "GSM606192", "GSM606193", "GSM606194", "GSM606195", "GSM606196", "GSM606197", "GSM606198", "GSM606199", "GSM606200", "GSM606201", "GSM606202" ], "type": "genotype/variation", "id": "GDS4094_3" }, { "dataset_id": "GDS4094", "description": "E2F3 heterozygous", "sample_id": [ "GSM606203", "GSM606204", "GSM606205", "GSM606206", "GSM606207", "GSM606208", "GSM606209", "GSM606210", "GSM606211", "GSM606212", "GSM606213", "GSM606214", "GSM606215", "GSM606216", "GSM606217", "GSM606218", "GSM606219", "GSM606220", "GSM606221", "GSM606222" ], "type": "genotype/variation", "id": "GDS4094_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4094", "version": 1.0, "instances": "80", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4094.tab", "compression": "gz" } ], [ [ "GDS4095.tab" ], { "title": "Tamoxifen effect on SRC-1-deficient endocrine-resistant breast cancer cell line LY2", "description": "Analysis of endocrine-resistant LY2 breast cancer cells depleted of p160 steroid coactivator protein SRC-1 and treated with tamoxifen. SRC-1 is central to the development of the endocrine resistant phenotype. Results provide insight into the molecular basis of endocrine resistant breast cancer.", "type": "Expression profiling by array", "pubmed_id": [ "22072566", "24648347" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE28645", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS4095", "description": "SRC1 knockdown", "sample_id": [ "GSM709767", "GSM709769", "GSM709771", "GSM709772", "GSM709765", "GSM709775" ], "type": "genotype/variation", "id": "GDS4095_1" }, { "dataset_id": "GDS4095", "description": "control", "sample_id": [ "GSM709768", "GSM709764", "GSM709766", "GSM709777", "GSM709773", "GSM709774", "GSM709770", "GSM709776" ], "type": "genotype/variation", "id": "GDS4095_2" }, { "dataset_id": "GDS4095", "description": "tamoxifen", "sample_id": [ "GSM709767", "GSM709769", "GSM709777", "GSM709764", "GSM709768", "GSM709766" ], "type": "agent", "id": "GDS4095_3" }, { "dataset_id": "GDS4095", "description": "untreated", "sample_id": [ "GSM709775", "GSM709765", "GSM709772", "GSM709771", "GSM709776", "GSM709770", "GSM709774", "GSM709773" ], "type": "agent", "id": "GDS4095_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4095", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4095.tab", "compression": "gz" } ], [ [ "GDS4096.tab" ], { "title": "Mutant p53 depletion effect on MDA-468.shp53 breast tumor cell line", "description": "Analysis of MDA-468.shp53 cells cultured under 3D conditions in the presence of DOX. These cells express a DOX-inducible shRNA targeting endogenous mutant p53. The p53-reduced cells have an invasive, highly disorganized appearance. Results provide insight into role of mutant p53 in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "22265415", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE31812", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4096", "description": "doxycycline present", "sample_id": [ "GSM789232", "GSM789234", "GSM789236" ], "type": "growth protocol", "id": "GDS4096_1" }, { "dataset_id": "GDS4096", "description": "doxycycline absent", "sample_id": [ "GSM789231", "GSM789233", "GSM789235" ], "type": "growth protocol", "id": "GDS4096_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4096", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4096.tab", "compression": "gz" } ], [ [ "GDS4099.tab" ], { "title": "Human Epidermal Growth Factor Receptor 2-positive breast cancer MMTV-Her2/Neu murine model: primary and secondary mammary tumors", "description": "Analysis of primary MMTV-Neu mammary tumors and secondary tumors generated by lin- cell transplantation or by single tumor-initiating cell (TIC) transplantation. Results enable molecular comparisons between the primary and secondary tumors.", "type": "Expression profiling by array", "pubmed_id": "22460789", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE29616", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4099", "description": "primary mammary tumor", "sample_id": [ "GSM733926", "GSM733927", "GSM733928", "GSM733929", "GSM733930" ], "type": "tissue", "id": "GDS4099_1" }, { "dataset_id": "GDS4099", "description": "secondary mammary tumor, lin- derived", "sample_id": [ "GSM733931", "GSM733932" ], "type": "tissue", "id": "GDS4099_2" }, { "dataset_id": "GDS4099", "description": "secondary mammary tumor, TIC derived", "sample_id": [ "GSM733933", "GSM733934", "GSM733935", "GSM733936", "GSM733937", "GSM733938", "GSM733939", "GSM733940", "GSM733941" ], "type": "tissue", "id": "GDS4099_3" }, { "dataset_id": "GDS4099", "description": "N86", "sample_id": [ "GSM733926" ], "type": "specimen", "id": "GDS4099_4" }, { "dataset_id": "GDS4099", "description": "N133", "sample_id": [ "GSM733927" ], "type": "specimen", "id": "GDS4099_5" }, { "dataset_id": "GDS4099", "description": "N135", "sample_id": [ "GSM733928" ], "type": "specimen", "id": "GDS4099_6" }, { "dataset_id": "GDS4099", "description": "N147", "sample_id": [ "GSM733929" ], "type": "specimen", "id": "GDS4099_7" }, { "dataset_id": "GDS4099", "description": "N182", "sample_id": [ "GSM733930" ], "type": "specimen", "id": "GDS4099_8" }, { "dataset_id": "GDS4099", "description": "WT575", "sample_id": [ "GSM733931" ], "type": "specimen", "id": "GDS4099_9" }, { "dataset_id": "GDS4099", "description": "WT636", "sample_id": [ "GSM733932" ], "type": "specimen", "id": "GDS4099_10" }, { "dataset_id": "GDS4099", "description": "WT562", "sample_id": [ "GSM733933" ], "type": "specimen", "id": "GDS4099_11" }, { "dataset_id": "GDS4099", "description": "WT573", "sample_id": [ "GSM733934" ], "type": "specimen", "id": "GDS4099_12" }, { "dataset_id": "GDS4099", "description": "WT583", "sample_id": [ "GSM733935" ], "type": "specimen", "id": "GDS4099_13" }, { "dataset_id": "GDS4099", "description": "WT592", "sample_id": [ "GSM733936" ], "type": "specimen", "id": "GDS4099_14" }, { "dataset_id": "GDS4099", "description": "WT593", "sample_id": [ "GSM733937" ], "type": "specimen", "id": "GDS4099_15" }, { "dataset_id": "GDS4099", "description": "WT596", "sample_id": [ "GSM733938" ], "type": "specimen", "id": "GDS4099_16" }, { "dataset_id": "GDS4099", "description": "WT614", "sample_id": [ "GSM733939" ], "type": "specimen", "id": "GDS4099_17" }, { "dataset_id": "GDS4099", "description": "WT620", "sample_id": [ "GSM733940" ], "type": "specimen", "id": "GDS4099_18" }, { "dataset_id": "GDS4099", "description": "WT641", "sample_id": [ "GSM733941" ], "type": "specimen", "id": "GDS4099_19" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS4099", "version": 1.0, "instances": "16", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4099.tab", "compression": "gz" } ], [ [ "GDS410.tab" ], { "title": "Spermatogenesis time course (MG-U74C)", "description": "Analysis of C57BL/6 testis from day 1 to adult. Determination of transcripts expressed specifically by male germ cells late in spermatogenesis (postmeiotic) reveals many candidates for contraceptive targeting and fertilization participants.", "type": "Expression profiling by array", "pubmed_id": "14526100", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE640", "order": "none", "update_date": "Apr 29 2015", "subsets": [ { "dataset_id": "GDS410", "description": "1 day", "sample_id": [ "GSM9870", "GSM9873", "GSM9876" ], "type": "age", "id": "GDS410_1" }, { "dataset_id": "GDS410", "description": "4 day", "sample_id": [ "GSM9879", "GSM9882" ], "type": "age", "id": "GDS410_2" }, { "dataset_id": "GDS410", "description": "8 day", "sample_id": [ "GSM9885", "GSM9888" ], "type": "age", "id": "GDS410_3" }, { "dataset_id": "GDS410", "description": "11 day", "sample_id": [ "GSM9891", "GSM9894" ], "type": "age", "id": "GDS410_4" }, { "dataset_id": "GDS410", "description": "14 day", "sample_id": [ "GSM9897" ], "type": "age", "id": "GDS410_5" }, { "dataset_id": "GDS410", "description": "18 day", "sample_id": [ "GSM9900" ], "type": "age", "id": "GDS410_6" }, { "dataset_id": "GDS410", "description": "19 day", "sample_id": [ "GSM9912", "GSM9915" ], "type": "age", "id": "GDS410_7" }, { "dataset_id": "GDS410", "description": "21 day", "sample_id": [ "GSM9903" ], "type": "age", "id": "GDS410_8" }, { "dataset_id": "GDS410", "description": "26 day", "sample_id": [ "GSM9906" ], "type": "age", "id": "GDS410_9" }, { "dataset_id": "GDS410", "description": "29 day", "sample_id": [ "GSM9909" ], "type": "age", "id": "GDS410_10" }, { "dataset_id": "GDS410", "description": "adult", "sample_id": [ "GSM9867" ], "type": "age", "id": "GDS410_11" }, { "dataset_id": "GDS410", "description": "testis", "sample_id": [ "GSM9870", "GSM9873", "GSM9876", "GSM9879", "GSM9882", "GSM9885", "GSM9888", "GSM9891", "GSM9894", "GSM9897", "GSM9900", "GSM9903", "GSM9906", "GSM9909", "GSM9867" ], "type": "tissue", "id": "GDS410_12" }, { "dataset_id": "GDS410", "description": "testis, interstitial cells", "sample_id": [ "GSM9912" ], "type": "tissue", "id": "GDS410_13" }, { "dataset_id": "GDS410", "description": "testis, tubular somatic cells", "sample_id": [ "GSM9915" ], "type": "tissue", "id": "GDS410_14" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS410", "version": 1.0, "instances": "17", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS410.tab", "compression": "gz" } ], [ [ "GDS4100.tab" ], { "title": "Saliva of pre-treatment pancreatic cancer patients", "description": "Analysis of saliva supernatant from pancreatic cancer patients and healthy subjects. Oral fluid (saliva) meets the demand for non-invasive, accessible, and highly efficient diagnostic medium. Results provide insight into salivary biomarkers for detection of pancreatic cancer.", "type": "Expression profiling by array", "pubmed_id": "19931263", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE14245", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4100", "description": "pancreatic cancer", "sample_id": [ "GSM356796", "GSM356797", "GSM356798", "GSM356799", "GSM356800", "GSM356801", "GSM356802", "GSM356803", "GSM356804", "GSM356805", "GSM356806", "GSM356807" ], "type": "disease state", "id": "GDS4100_1" }, { "dataset_id": "GDS4100", "description": "healthy control", "sample_id": [ "GSM356808", "GSM356809", "GSM356810", "GSM356811", "GSM356812", "GSM356813", "GSM356814", "GSM356815", "GSM356816", "GSM356817", "GSM356818", "GSM356819" ], "type": "disease state", "id": "GDS4100_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4100", "version": 1.0, "instances": "24", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4100.tab", "compression": "gz" } ], [ [ "GDS4101.tab" ], { "title": "Response of pancreatic and colorectal cancer cells to CD24 down-regulation by monoclonal antibody or small interfering RNA", "description": "Analysis of HT29 and Colo357 cancer cell lines following treatment with anti-CD24 mAbs, and HT29 cells after expression of 1 or 2 shRNA vectors directed at the CD24 gene. CD24 is overexpressed in a large variety of human malignancies. Results provide insight into the role of CD4 in carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "18413748", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE15102", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4101", "description": "HT29, colon-derived", "sample_id": [ "GSM377675", "GSM377671", "GSM377672", "GSM377677", "GSM377676", "GSM377678" ], "type": "cell line", "id": "GDS4101_1" }, { "dataset_id": "GDS4101", "description": "Colo357, pancreas-derived", "sample_id": [ "GSM377673", "GSM377674" ], "type": "cell line", "id": "GDS4101_2" }, { "dataset_id": "GDS4101", "description": "anti-CD24 mAb", "sample_id": [ "GSM377674", "GSM377672" ], "type": "agent", "id": "GDS4101_3" }, { "dataset_id": "GDS4101", "description": "no treatment", "sample_id": [ "GSM377673", "GSM377671" ], "type": "agent", "id": "GDS4101_4" }, { "dataset_id": "GDS4101", "description": "2 anti-CD24 shRNA vectors", "sample_id": [ "GSM377677", "GSM377678" ], "type": "agent", "id": "GDS4101_5" }, { "dataset_id": "GDS4101", "description": "anti-CD24 shRNA vector", "sample_id": [ "GSM377676" ], "type": "agent", "id": "GDS4101_6" }, { "dataset_id": "GDS4101", "description": "control shRNA", "sample_id": [ "GSM377675" ], "type": "agent", "id": "GDS4101_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4101", "version": 1.0, "instances": "8", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4101.tab", "compression": "gz" } ], [ [ "GDS4102.tab" ], { "title": "Pancreatic Tumor and Normal tissue samples", "description": "Analysis of tumor tissue and normal tissue in pancreatic cancer samples. The fresh frozen samples were obtained during surgical procedures. Results provide insight into molecular mechanisms underlying tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "19732725", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE16515", "order": "none", "update_date": "Jun 07 2012", "subsets": [ { "dataset_id": "GDS4102", "description": "tumor", "sample_id": [ "GSM414924", "GSM414925", "GSM414926", "GSM414927", "GSM414929", "GSM414931", "GSM414933", "GSM414935", "GSM414936", "GSM414937", "GSM414939", "GSM414941", "GSM414943", "GSM414944", "GSM414945", "GSM414946", "GSM414948", "GSM414949", "GSM414950", "GSM414951", "GSM414952", "GSM414954", "GSM414956", "GSM414958", "GSM414959", "GSM414960", "GSM414961", "GSM414962", "GSM414964", "GSM414965", "GSM414967", "GSM414968", "GSM414969", "GSM414971", "GSM414973", "GSM414974" ], "type": "tissue", "id": "GDS4102_1" }, { "dataset_id": "GDS4102", "description": "normal", "sample_id": [ "GSM414928", "GSM414930", "GSM414932", "GSM414934", "GSM414938", "GSM414940", "GSM414942", "GSM414947", "GSM414953", "GSM414955", "GSM414957", "GSM414963", "GSM414966", "GSM414970", "GSM414972", "GSM414975" ], "type": "tissue", "id": "GDS4102_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4102", "version": 1.0, "instances": "52", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4102.tab", "compression": "gz" } ], [ [ "GDS4103.tab" ], { "title": "ICF cohort: Whole-tissue pancreatic ductal adenocarcinoma", "description": "Analysis of pancreatic ductal adenocarcinoma (PDAC) tumors and matching normal pancreatic tissue from ICF pancreatic cancer patients. PDAC is an aggressive, rapidly disseminating, desmoplastic cancer with poor prognosis. Results provide insight into molecular processes involved in PDAC pathology.", "type": "Expression profiling by array", "pubmed_id": "19260470", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "78", "value_type": "transformed count", "reference_series": "GSE15471", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4103", "description": "PDAC tumor", "sample_id": [ "GSM388153", "GSM388152", "GSM388151", "GSM388150", "GSM388149", "GSM388148", "GSM388147", "GSM388146", "GSM388145", "GSM388144", "GSM388143", "GSM388142", "GSM388141", "GSM388140", "GSM388120", "GSM388119", "GSM388139", "GSM388138", "GSM388137", "GSM388136", "GSM388135", "GSM388134", "GSM388133", "GSM388132", "GSM388131", "GSM388118", "GSM388117", "GSM388130", "GSM388129", "GSM388128", "GSM388127", "GSM388126", "GSM388125", "GSM388124", "GSM388123", "GSM388116", "GSM388115", "GSM388122", "GSM388121" ], "type": "tissue", "id": "GDS4103_1" }, { "dataset_id": "GDS4103", "description": "normal pancreatic", "sample_id": [ "GSM388114", "GSM388113", "GSM388112", "GSM388111", "GSM388110", "GSM388109", "GSM388108", "GSM388107", "GSM388106", "GSM388105", "GSM388104", "GSM388103", "GSM388102", "GSM388101", "GSM388081", "GSM388080", "GSM388100", "GSM388099", "GSM388098", "GSM388097", "GSM388096", "GSM388095", "GSM388094", "GSM388093", "GSM388092", "GSM388079", "GSM388078", "GSM388091", "GSM388090", "GSM388089", "GSM388088", "GSM388087", "GSM388086", "GSM388085", "GSM388084", "GSM388077", "GSM388076", "GSM388083", "GSM388082" ], "type": "tissue", "id": "GDS4103_2" }, { "dataset_id": "GDS4103", "description": "30162", "sample_id": [ "GSM388076", "GSM388077", "GSM388115", "GSM388116" ], "type": "individual", "id": "GDS4103_3" }, { "dataset_id": "GDS4103", "description": "40728", "sample_id": [ "GSM388078", "GSM388079", "GSM388117", "GSM388118" ], "type": "individual", "id": "GDS4103_4" }, { "dataset_id": "GDS4103", "description": "41027", "sample_id": [ "GSM388080", "GSM388081", "GSM388119", "GSM388120" ], "type": "individual", "id": "GDS4103_5" }, { "dataset_id": "GDS4103", "description": "30057", "sample_id": [ "GSM388082", "GSM388121" ], "type": "individual", "id": "GDS4103_6" }, { "dataset_id": "GDS4103", "description": "30068", "sample_id": [ "GSM388083", "GSM388122" ], "type": "individual", "id": "GDS4103_7" }, { "dataset_id": "GDS4103", "description": "30277", "sample_id": [ "GSM388084", "GSM388123" ], "type": "individual", "id": "GDS4103_8" }, { "dataset_id": "GDS4103", "description": "30308", "sample_id": [ "GSM388085", "GSM388124" ], "type": "individual", "id": "GDS4103_9" }, { "dataset_id": "GDS4103", "description": "30364", "sample_id": [ "GSM388086", "GSM388125" ], "type": "individual", "id": "GDS4103_10" }, { "dataset_id": "GDS4103", "description": "30582", "sample_id": [ "GSM388126", "GSM388087" ], "type": "individual", "id": "GDS4103_11" }, { "dataset_id": "GDS4103", "description": "30617", "sample_id": [ "GSM388088", "GSM388127" ], "type": "individual", "id": "GDS4103_12" }, { "dataset_id": "GDS4103", "description": "40645", "sample_id": [ "GSM388128", "GSM388089" ], "type": "individual", "id": "GDS4103_13" }, { "dataset_id": "GDS4103", "description": "40656", "sample_id": [ "GSM388090", "GSM388129" ], "type": "individual", "id": "GDS4103_14" }, { "dataset_id": "GDS4103", "description": "40726", "sample_id": [ "GSM388130", "GSM388091" ], "type": "individual", "id": "GDS4103_15" }, { "dataset_id": "GDS4103", "description": "40730", "sample_id": [ "GSM388092", "GSM388131" ], "type": "individual", "id": "GDS4103_16" }, { "dataset_id": "GDS4103", "description": "40741", "sample_id": [ "GSM388093", "GSM388132" ], "type": "individual", "id": "GDS4103_17" }, { "dataset_id": "GDS4103", "description": "40836", "sample_id": [ "GSM388094", "GSM388133" ], "type": "individual", "id": "GDS4103_18" }, { "dataset_id": "GDS4103", "description": "40843", "sample_id": [ "GSM388095", "GSM388134" ], "type": "individual", "id": "GDS4103_19" }, { "dataset_id": "GDS4103", "description": "40875", "sample_id": [ "GSM388135", "GSM388096" ], "type": "individual", "id": "GDS4103_20" }, { "dataset_id": "GDS4103", "description": "40892", "sample_id": [ "GSM388097", "GSM388136" ], "type": "individual", "id": "GDS4103_21" }, { "dataset_id": "GDS4103", "description": "40899", "sample_id": [ "GSM388137", "GSM388098" ], "type": "individual", "id": "GDS4103_22" }, { "dataset_id": "GDS4103", "description": "51084", "sample_id": [ "GSM388140", "GSM388101" ], "type": "individual", "id": "GDS4103_23" }, { "dataset_id": "GDS4103", "description": "51091", "sample_id": [ "GSM388141", "GSM388102" ], "type": "individual", "id": "GDS4103_24" }, { "dataset_id": "GDS4103", "description": "51176", "sample_id": [ "GSM388142", "GSM388103" ], "type": "individual", "id": "GDS4103_25" }, { "dataset_id": "GDS4103", "description": "51292", "sample_id": [ "GSM388104", "GSM388143" ], "type": "individual", "id": "GDS4103_26" }, { "dataset_id": "GDS4103", "description": "51294", "sample_id": [ "GSM388144", "GSM388105" ], "type": "individual", "id": "GDS4103_27" }, { "dataset_id": "GDS4103", "description": "51308", "sample_id": [ "GSM388106", "GSM388145" ], "type": "individual", "id": "GDS4103_28" }, { "dataset_id": "GDS4103", "description": "51315", "sample_id": [ "GSM388107", "GSM388146" ], "type": "individual", "id": "GDS4103_29" }, { "dataset_id": "GDS4103", "description": "51572", "sample_id": [ "GSM388108", "GSM388147" ], "type": "individual", "id": "GDS4103_30" }, { "dataset_id": "GDS4103", "description": "51628", "sample_id": [ "GSM388148", "GSM388109" ], "type": "individual", "id": "GDS4103_31" }, { "dataset_id": "GDS4103", "description": "51677", "sample_id": [ "GSM388110", "GSM388149" ], "type": "individual", "id": "GDS4103_32" }, { "dataset_id": "GDS4103", "description": "51681", "sample_id": [ "GSM388150", "GSM388111" ], "type": "individual", "id": "GDS4103_33" }, { "dataset_id": "GDS4103", "description": "51721", "sample_id": [ "GSM388112", "GSM388151" ], "type": "individual", "id": "GDS4103_34" }, { "dataset_id": "GDS4103", "description": "51722", "sample_id": [ "GSM388152", "GSM388113" ], "type": "individual", "id": "GDS4103_35" }, { "dataset_id": "GDS4103", "description": "51783", "sample_id": [ "GSM388114", "GSM388153" ], "type": "individual", "id": "GDS4103_36" }, { "dataset_id": "GDS4103", "description": "40977", "sample_id": [ "GSM388100", "GSM388139" ], "type": "individual", "id": "GDS4103_37" }, { "dataset_id": "GDS4103", "description": "40975", "sample_id": [ "GSM388099", "GSM388138" ], "type": "individual", "id": "GDS4103_38" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4103", "version": 1.0, "instances": "78", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4103.tab", "compression": "gz" } ], [ [ "GDS4104.tab" ], { "title": "Long-term heat-stress effect on skeletal muscle", "description": "Analysis of skeletal muscle from eight healthy men following a 10-week application of heat stress (8 hours/day, 4 days/week) on the quadriceps muscles without exercise training. Results provide insight into the molecular mechanisms involved in the muscular adaptation to heat stress.", "type": "Expression profiling by array", "pubmed_id": "20803152", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE12474", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4104", "description": "Subject 1", "sample_id": [ "GSM313319", "GSM313315" ], "type": "individual", "id": "GDS4104_1" }, { "dataset_id": "GDS4104", "description": "Subject 2", "sample_id": [ "GSM313320", "GSM313316" ], "type": "individual", "id": "GDS4104_2" }, { "dataset_id": "GDS4104", "description": "Subject 3", "sample_id": [ "GSM313321", "GSM313324" ], "type": "individual", "id": "GDS4104_3" }, { "dataset_id": "GDS4104", "description": "Subject 4", "sample_id": [ "GSM313322", "GSM313317" ], "type": "individual", "id": "GDS4104_4" }, { "dataset_id": "GDS4104", "description": "Subject 5", "sample_id": [ "GSM313323", "GSM313318" ], "type": "individual", "id": "GDS4104_5" }, { "dataset_id": "GDS4104", "description": "control", "sample_id": [ "GSM313324", "GSM313318", "GSM313317", "GSM313316", "GSM313315" ], "type": "stress", "id": "GDS4104_6" }, { "dataset_id": "GDS4104", "description": "long-term heat", "sample_id": [ "GSM313323", "GSM313322", "GSM313321", "GSM313320", "GSM313319" ], "type": "stress", "id": "GDS4104_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4104", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4104.tab", "compression": "gz" } ], [ [ "GDS4105.tab" ], { "title": "Masitinib-gemcitabin effect on gemcitabine-refractory Mia Paca-2 pancreatic tumor cell line", "description": "Analysis of Mia Paca2 cells after treatment with masitinib combined with standard gemcitabine chemotherapy. Masitinib is a tyrosine kinase inhibitor of c-Kit, PDGFR\u03b1 and \u03b2. Results provide insight into the therapeutic potential of masitinib in vitro on human pancreatic tumor cell lines.", "type": "Expression profiling by array", "pubmed_id": [ "20209107", "22110708" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE17987", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4105", "description": "masitinib", "sample_id": [ "GSM450326" ], "type": "agent", "id": "GDS4105_1" }, { "dataset_id": "GDS4105", "description": "gemcitabine", "sample_id": [ "GSM450327" ], "type": "agent", "id": "GDS4105_2" }, { "dataset_id": "GDS4105", "description": "masitinib and gemcitabine", "sample_id": [ "GSM450328" ], "type": "agent", "id": "GDS4105_3" }, { "dataset_id": "GDS4105", "description": "no treatment", "sample_id": [ "GSM450325" ], "type": "agent", "id": "GDS4105_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4105", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4105.tab", "compression": "gz" } ], [ [ "GDS4106.tab" ], { "title": "Transforming growth factor beta effect on Panc-1 pancreatic adenocarcinoma cell line", "description": "Analysis of Panc-1 cells treated with TGF\u03b2 to induce epithelial-mesenchymal transition. During EMT, cancer cells lose epithelial specific proteins and gain mesenchymal proteins to acquire migratory/invasive phenotype essential for metastasis. Results provide insight into molecular basis of EMT.", "type": "Expression profiling by array", "pubmed_id": "20885998", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23952", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4106", "description": "control", "sample_id": [ "GSM590166", "GSM590167", "GSM590168" ], "type": "agent", "id": "GDS4106_1" }, { "dataset_id": "GDS4106", "description": "TGF\u03b2", "sample_id": [ "GSM590169", "GSM590170", "GSM590171" ], "type": "agent", "id": "GDS4106_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4106", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4106.tab", "compression": "gz" } ], [ [ "GDS4107.tab" ], { "title": "KUCaP-2 xenograft model of castration-resistant prostate cancer: various stages", "description": "Analysis of KUCaP-2 xenograft tissues transplanted into mice and collected during androgen-dependent growth (AD), castration-induced regression nadir (ND), and castration-resistant regrowth (CR) stages. Results provide insight into molecular basis of castration-resistant prostate cancer development.", "type": "Expression profiling by array", "pubmed_id": "20145136", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE21887", "order": "ordered", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4107", "description": "androgen-dependent growth", "sample_id": [ "GSM544229", "GSM544230", "GSM544231", "GSM544232" ], "type": "development stage", "id": "GDS4107_1" }, { "dataset_id": "GDS4107", "description": "castration-induced regression nadir", "sample_id": [ "GSM544233", "GSM544234", "GSM544235", "GSM544236" ], "type": "development stage", "id": "GDS4107_2" }, { "dataset_id": "GDS4107", "description": "castration-resistant regrowth", "sample_id": [ "GSM544237", "GSM544238", "GSM544239", "GSM544240" ], "type": "development stage", "id": "GDS4107_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4107", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4107.tab", "compression": "gz" } ], [ [ "GDS4108.tab" ], { "title": "Prostate response to activated form of p110\u03b2 isoform of PI3-kinase", "description": "Analysis of ventral prostate from transgenics expressing a constitutively activated p110\u03b2 allele in prostate. Activation of the p110\u03b2 isoform causes mouse prostatic intraepithelial neoplasia (mPIN). Results provide insight into ability of an activated allele of p110\u03b2 to induce prostatic tumor.", "type": "Expression profiling by array", "pubmed_id": "20534477", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE21543", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4108", "description": "prostatic intraepithelial neoplasia", "sample_id": [ "GSM538054", "GSM538055", "GSM538058", "GSM538059" ], "type": "disease state", "id": "GDS4108_1" }, { "dataset_id": "GDS4108", "description": "normal control", "sample_id": [ "GSM538053", "GSM538056", "GSM538057", "GSM538060" ], "type": "disease state", "id": "GDS4108_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4108", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4108.tab", "compression": "gz" } ], [ [ "GDS4109.tab" ], { "title": "Recurrent and non-recurrent prostate cancer primary tumors", "description": "Analysis of prostate cancer primary tumors of known disease recurrence status. Results provide insight into the molecular mechanisms underlying recurrent and non-recurrent prostate cancer primary tumors.", "type": "Expression profiling by array", "pubmed_id": "19343730", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "count", "reference_series": "GSE25136", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4109", "description": "non-recurrent", "sample_id": [ "GSM617581", "GSM617582", "GSM617588", "GSM617590", "GSM617592", "GSM617607", "GSM617608", "GSM617609", "GSM617612", "GSM617615", "GSM617616", "GSM617617", "GSM617618", "GSM617619", "GSM617620", "GSM617622", "GSM617623", "GSM617624", "GSM617625", "GSM617626", "GSM617627", "GSM617628", "GSM617632", "GSM617634", "GSM617635", "GSM617636", "GSM617637", "GSM617638", "GSM617639", "GSM617640", "GSM617641", "GSM617643", "GSM617644", "GSM617647", "GSM617648", "GSM617649", "GSM617650", "GSM617651", "GSM617653", "GSM617654" ], "type": "disease state", "id": "GDS4109_1" }, { "dataset_id": "GDS4109", "description": "recurrent", "sample_id": [ "GSM617583", "GSM617584", "GSM617585", "GSM617586", "GSM617587", "GSM617589", "GSM617591", "GSM617593", "GSM617594", "GSM617595", "GSM617596", "GSM617597", "GSM617598", "GSM617599", "GSM617600", "GSM617601", "GSM617602", "GSM617603", "GSM617604", "GSM617605", "GSM617606", "GSM617610", "GSM617611", "GSM617613", "GSM617614", "GSM617621", "GSM617629", "GSM617630", "GSM617631", "GSM617633", "GSM617642", "GSM617645", "GSM617646", "GSM617652", "GSM617655", "GSM617656", "GSM617657", "GSM617658", "GSM617659" ], "type": "disease state", "id": "GDS4109_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4109", "version": 1.0, "instances": "79", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4109.tab", "compression": "gz" } ], [ [ "GDS411.tab" ], { "title": "Heart failure and rescue (Mu11K-A)", "description": "Analysis of left ventricular (LV) gene expression to uncover genomic changes associated with cardiomyopathy and/or its phenotypic rescue by the beta-adrenergic receptor kinase, betaARKc.", "type": "Expression profiling by array", "pubmed_id": "12865503", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "53", "value_type": "count", "reference_series": "GSE670", "order": "none", "update_date": "Nov 26 2003", "subsets": [ { "dataset_id": "GDS411", "description": "normal", "sample_id": [ "GSM10178", "GSM10179", "GSM10180", "GSM10181", "GSM10182", "GSM10183", "GSM10184", "GSM10185", "GSM10186", "GSM10187", "GSM10188", "GSM10189" ], "type": "disease state", "id": "GDS411_1" }, { "dataset_id": "GDS411", "description": "heart failure", "sample_id": [ "GSM10190", "GSM10191", "GSM10192", "GSM10193", "GSM10194", "GSM10195", "GSM10196", "GSM10197", "GSM10198", "GSM10199", "GSM10200", "GSM10201" ], "type": "disease state", "id": "GDS411_2" }, { "dataset_id": "GDS411", "description": "rescued heart failure (transgenic betaARKct)", "sample_id": [ "GSM10202", "GSM10203", "GSM10204", "GSM10205", "GSM10206", "GSM10207", "GSM10208", "GSM10209", "GSM10210", "GSM10211", "GSM10212", "GSM10213" ], "type": "disease state", "id": "GDS411_3" }, { "dataset_id": "GDS411", "description": "normal transgenic (transgenic betaARKct)", "sample_id": [ "GSM10214", "GSM10215", "GSM10216", "GSM10217", "GSM10218", "GSM10219" ], "type": "disease state", "id": "GDS411_4" }, { "dataset_id": "GDS411", "description": "advanced stage heart failure", "sample_id": [ "GSM10220", "GSM10221", "GSM10222", "GSM10223", "GSM10224", "GSM10225" ], "type": "disease state", "id": "GDS411_5" }, { "dataset_id": "GDS411", "description": "mild heart failure", "sample_id": [ "GSM10226", "GSM10227", "GSM10228", "GSM10229", "GSM10230" ], "type": "disease state", "id": "GDS411_6" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS411", "version": 1.0, "instances": "53", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS411.tab", "compression": "gz" } ], [ [ "GDS4110.tab" ], { "title": "Inactivation of wt-p53 function in hTERT immortalized prostate epithelial EP156T cells: time course", "description": "Temporal analysis of EP156T cells infected with a recombinant retrovirus encoding either p53R175H mutant (M cells), dominant-negative p53 peptide GSE56 (G cells) or control vector (C cells). Results provide insight into molecular mechanisms underlying early stages of transformation.", "type": "Expression profiling by array", "pubmed_id": [ "21297939", "20689556" ], "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE23038", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4110", "description": "passage 0", "sample_id": [ "GSM568587" ], "type": "time", "id": "GDS4110_1" }, { "dataset_id": "GDS4110", "description": "passage 10", "sample_id": [ "GSM568588" ], "type": "time", "id": "GDS4110_2" }, { "dataset_id": "GDS4110", "description": "passage 20", "sample_id": [ "GSM568589" ], "type": "time", "id": "GDS4110_3" }, { "dataset_id": "GDS4110", "description": "passage 30", "sample_id": [ "GSM568590", "GSM568596", "GSM568602" ], "type": "time", "id": "GDS4110_4" }, { "dataset_id": "GDS4110", "description": "passage 40", "sample_id": [ "GSM568591", "GSM568597", "GSM568603" ], "type": "time", "id": "GDS4110_5" }, { "dataset_id": "GDS4110", "description": "passage 50", "sample_id": [ "GSM568592", "GSM568604", "GSM568598" ], "type": "time", "id": "GDS4110_6" }, { "dataset_id": "GDS4110", "description": "passage 60", "sample_id": [ "GSM568593", "GSM568599", "GSM568605" ], "type": "time", "id": "GDS4110_7" }, { "dataset_id": "GDS4110", "description": "passage 70", "sample_id": [ "GSM568606", "GSM568600", "GSM568594" ], "type": "time", "id": "GDS4110_8" }, { "dataset_id": "GDS4110", "description": "passage 80", "sample_id": [ "GSM568607", "GSM568608", "GSM568609", "GSM568610", "GSM568611", "GSM568612", "GSM568613", "GSM568601", "GSM568595" ], "type": "time", "id": "GDS4110_9" }, { "dataset_id": "GDS4110", "description": "no vector control", "sample_id": [ "GSM568587", "GSM568588", "GSM568589" ], "type": "genotype/variation", "id": "GDS4110_10" }, { "dataset_id": "GDS4110", "description": "empty vector control", "sample_id": [ "GSM568590", "GSM568591", "GSM568592", "GSM568593", "GSM568594", "GSM568595", "GSM568611" ], "type": "genotype/variation", "id": "GDS4110_11" }, { "dataset_id": "GDS4110", "description": "p53R175H", "sample_id": [ "GSM568602", "GSM568603", "GSM568604", "GSM568605", "GSM568606", "GSM568607", "GSM568613" ], "type": "genotype/variation", "id": "GDS4110_12" }, { "dataset_id": "GDS4110", "description": "GSE56", "sample_id": [ "GSM568596", "GSM568597", "GSM568598", "GSM568599", "GSM568600", "GSM568601", "GSM568612" ], "type": "genotype/variation", "id": "GDS4110_13" }, { "dataset_id": "GDS4110", "description": "empty vector + hRAS", "sample_id": [ "GSM568608" ], "type": "genotype/variation", "id": "GDS4110_14" }, { "dataset_id": "GDS4110", "description": "GSE56 + hRAS", "sample_id": [ "GSM568609" ], "type": "genotype/variation", "id": "GDS4110_15" }, { "dataset_id": "GDS4110", "description": "p53R175H + hRAS", "sample_id": [ "GSM568610" ], "type": "genotype/variation", "id": "GDS4110_16" }, { "dataset_id": "GDS4110", "description": "no infection", "sample_id": [ "GSM568587", "GSM568588", "GSM568589" ], "type": "infection", "id": "GDS4110_17" }, { "dataset_id": "GDS4110", "description": "at passage 25", "sample_id": [ "GSM568590", "GSM568591", "GSM568592", "GSM568593", "GSM568594", "GSM568595", "GSM568596", "GSM568597", "GSM568598", "GSM568599", "GSM568600", "GSM568601", "GSM568602", "GSM568603", "GSM568604", "GSM568605", "GSM568606", "GSM568607" ], "type": "infection", "id": "GDS4110_18" }, { "dataset_id": "GDS4110", "description": "just before passage 80", "sample_id": [ "GSM568608", "GSM568609", "GSM568610", "GSM568611", "GSM568612", "GSM568613" ], "type": "infection", "id": "GDS4110_19" }, { "dataset_id": "GDS4110", "description": "N0", "sample_id": [ "GSM568587" ], "type": "other", "id": "GDS4110_20" }, { "dataset_id": "GDS4110", "description": "N1", "sample_id": [ "GSM568588" ], "type": "other", "id": "GDS4110_21" }, { "dataset_id": "GDS4110", "description": "N2", "sample_id": [ "GSM568589" ], "type": "other", "id": "GDS4110_22" }, { "dataset_id": "GDS4110", "description": "C3", "sample_id": [ "GSM568590" ], "type": "other", "id": "GDS4110_23" }, { "dataset_id": "GDS4110", "description": "C4", "sample_id": [ "GSM568591" ], "type": "other", "id": "GDS4110_24" }, { "dataset_id": "GDS4110", "description": "C5", "sample_id": [ "GSM568592" ], "type": "other", "id": "GDS4110_25" }, { "dataset_id": "GDS4110", "description": "C6", "sample_id": [ "GSM568593" ], "type": "other", "id": "GDS4110_26" }, { "dataset_id": "GDS4110", "description": "C7", "sample_id": [ "GSM568594" ], "type": "other", "id": "GDS4110_27" }, { "dataset_id": "GDS4110", "description": "C8", "sample_id": [ "GSM568595" ], "type": "other", "id": "GDS4110_28" }, { "dataset_id": "GDS4110", "description": "G3", "sample_id": [ "GSM568596" ], "type": "other", "id": "GDS4110_29" }, { "dataset_id": "GDS4110", "description": "G4", "sample_id": [ "GSM568597" ], "type": "other", "id": "GDS4110_30" }, { "dataset_id": "GDS4110", "description": "G5", "sample_id": [ "GSM568598" ], "type": "other", "id": "GDS4110_31" }, { "dataset_id": "GDS4110", "description": "G6", "sample_id": [ "GSM568599" ], "type": "other", "id": "GDS4110_32" }, { "dataset_id": "GDS4110", "description": "G7", "sample_id": [ "GSM568600" ], "type": "other", "id": "GDS4110_33" }, { "dataset_id": "GDS4110", "description": "G8", "sample_id": [ "GSM568601" ], "type": "other", "id": "GDS4110_34" }, { "dataset_id": "GDS4110", "description": "M3", "sample_id": [ "GSM568602" ], "type": "other", "id": "GDS4110_35" }, { "dataset_id": "GDS4110", "description": "M4", "sample_id": [ "GSM568603" ], "type": "other", "id": "GDS4110_36" }, { "dataset_id": "GDS4110", "description": "M5", "sample_id": [ "GSM568604" ], "type": "other", "id": "GDS4110_37" }, { "dataset_id": "GDS4110", "description": "M6", "sample_id": [ "GSM568605" ], "type": "other", "id": "GDS4110_38" }, { "dataset_id": "GDS4110", "description": "M7", "sample_id": [ "GSM568606" ], "type": "other", "id": "GDS4110_39" }, { "dataset_id": "GDS4110", "description": "M8", "sample_id": [ "GSM568607" ], "type": "other", "id": "GDS4110_40" }, { "dataset_id": "GDS4110", "description": "C8R", "sample_id": [ "GSM568608" ], "type": "other", "id": "GDS4110_41" }, { "dataset_id": "GDS4110", "description": "G8R", "sample_id": [ "GSM568609" ], "type": "other", "id": "GDS4110_42" }, { "dataset_id": "GDS4110", "description": "M8R", "sample_id": [ "GSM568610" ], "type": "other", "id": "GDS4110_43" }, { "dataset_id": "GDS4110", "description": "N8C", "sample_id": [ "GSM568611" ], "type": "other", "id": "GDS4110_44" }, { "dataset_id": "GDS4110", "description": "N8G", "sample_id": [ "GSM568612" ], "type": "other", "id": "GDS4110_45" }, { "dataset_id": "GDS4110", "description": "N8M", "sample_id": [ "GSM568613" ], "type": "other", "id": "GDS4110_46" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4110", "version": 1.0, "instances": "27", "variables": 14059, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4110.tab", "compression": "gz" } ], [ [ "GDS4113.tab" ], { "title": "Late passage LNCaP prostate tumor cells treated with androgen receptor shRNA or androgen R1881", "description": "Analysis of late passage (LP50) LNCaP cells treated with AR shRNA or control shRNA, grown in hormone-free media to deplete androgen, and treated with androgen R1881 or vehicle. Results provide insight into molecular mechanisms underlying acquired androgen independence of late passage LNCaP cells.", "type": "Expression profiling by array", "pubmed_id": "21330406", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE22483", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4113", "description": "control shRNA + androgen R1881", "sample_id": [ "GSM558627", "GSM558626" ], "type": "genotype/variation", "id": "GDS4113_1" }, { "dataset_id": "GDS4113", "description": "androgen receptor shRNA + vehicle", "sample_id": [ "GSM558629", "GSM558628" ], "type": "genotype/variation", "id": "GDS4113_2" }, { "dataset_id": "GDS4113", "description": "control shRNA + vehicle", "sample_id": [ "GSM558625", "GSM558624" ], "type": "genotype/variation", "id": "GDS4113_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4113", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4113.tab", "compression": "gz" } ], [ [ "GDS4114.tab" ], { "title": "Reactive stroma of breast and prostate cancer", "description": "Analysis of stroma associated with prostate and breast invasive tumors. Stromal reaction (tumor-associated tissue remodeling) occurs in various cancers. Results provide insight into whether this stromal response is largely a generic phenomenon or whether it reflects tumor-specific properties.", "type": "Expression profiling by array", "pubmed_id": "21611158", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE26910", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4114", "description": "prostate", "sample_id": [ "GSM662756", "GSM662757", "GSM662758", "GSM662759", "GSM662760", "GSM662761", "GSM662762", "GSM662763", "GSM662764", "GSM662765", "GSM662766", "GSM662767" ], "type": "tissue", "id": "GDS4114_1" }, { "dataset_id": "GDS4114", "description": "breast", "sample_id": [ "GSM662768", "GSM662769", "GSM662770", "GSM662771", "GSM662772", "GSM662773", "GSM662774", "GSM662775", "GSM662776", "GSM662777", "GSM662778", "GSM662779" ], "type": "tissue", "id": "GDS4114_2" }, { "dataset_id": "GDS4114", "description": "invasive tumor associated", "sample_id": [ "GSM662757", "GSM662759", "GSM662761", "GSM662763", "GSM662765", "GSM662767", "GSM662769", "GSM662771", "GSM662773", "GSM662775", "GSM662777", "GSM662779" ], "type": "disease state", "id": "GDS4114_3" }, { "dataset_id": "GDS4114", "description": "normal", "sample_id": [ "GSM662756", "GSM662758", "GSM662760", "GSM662762", "GSM662764", "GSM662766", "GSM662768", "GSM662770", "GSM662772", "GSM662774", "GSM662776", "GSM662778" ], "type": "disease state", "id": "GDS4114_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4114", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4114.tab", "compression": "gz" } ], [ [ "GDS4115.tab" ], { "title": "Diabetogenic 3A9 T-cell transfer model of type I diabetes: pancreatic islets", "description": "Analysis of islet cells after injection of diabetogenic 3A9 CD4 T cells into nondiabetic B10.BR IP-HEL recipients, 8 to 24 hrs post-transfer. Results provide insight into molecular mechanisms underlying the T-cell entry induced state of receptivity of islets to subsequent immunological insults.", "type": "Expression profiling by array", "pubmed_id": "21220309", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE26147", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4115", "description": "IP-HEL", "sample_id": [ "GSM641877", "GSM641878", "GSM641879", "GSM641876", "GSM641873", "GSM641874" ], "type": "genotype/variation", "id": "GDS4115_1" }, { "dataset_id": "GDS4115", "description": "wildtype", "sample_id": [ "GSM641875" ], "type": "genotype/variation", "id": "GDS4115_2" }, { "dataset_id": "GDS4115", "description": "diabetogenic 3A9 T cell transfer", "sample_id": [ "GSM641875", "GSM641877", "GSM641878", "GSM641879", "GSM641876" ], "type": "protocol", "id": "GDS4115_3" }, { "dataset_id": "GDS4115", "description": "untreated", "sample_id": [ "GSM641873", "GSM641874" ], "type": "protocol", "id": "GDS4115_4" }, { "dataset_id": "GDS4115", "description": "control", "sample_id": [ "GSM641873", "GSM641874" ], "type": "time", "id": "GDS4115_5" }, { "dataset_id": "GDS4115", "description": "8 hr", "sample_id": [ "GSM641876" ], "type": "time", "id": "GDS4115_6" }, { "dataset_id": "GDS4115", "description": "24 hr", "sample_id": [ "GSM641875", "GSM641877", "GSM641878", "GSM641879" ], "type": "time", "id": "GDS4115_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4115", "version": 1.0, "instances": "7", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4115.tab", "compression": "gz" } ], [ [ "GDS4116.tab" ], { "title": "Diabetogenic BDC T-cell transfer model of type I diabetes: pancreatic islets", "description": "Analysis of pancreatic islets after injection of diabetogenic BDC CD4 T cells into nondiabetic NOD Rag1-/- recipients, 24 to 48 hrs post-transfer. Results provide insight into molecular mechanisms underlying the T-cell entry induced state of receptivity of islets to subsequent immunological insults.", "type": "Expression profiling by array", "pubmed_id": "21220309", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE26147", "order": "none", "update_date": "May 30 2012", "subsets": [ { "dataset_id": "GDS4116", "description": "pancreatic islets", "sample_id": [ "GSM641880", "GSM641881", "GSM641882", "GSM641884", "GSM641885", "GSM641886", "GSM641887", "GSM641888", "GSM641890", "GSM641891", "GSM641892" ], "type": "cell type", "id": "GDS4116_1" }, { "dataset_id": "GDS4116", "description": "purified beta cells", "sample_id": [ "GSM641883", "GSM641889" ], "type": "cell type", "id": "GDS4116_2" }, { "dataset_id": "GDS4116", "description": "RAG1-/-", "sample_id": [ "GSM641880", "GSM641881", "GSM641882", "GSM641883", "GSM641884", "GSM641886", "GSM641889", "GSM641890", "GSM641891", "GSM641892" ], "type": "genotype/variation", "id": "GDS4116_3" }, { "dataset_id": "GDS4116", "description": "INFGR-/-", "sample_id": [ "GSM641885", "GSM641887", "GSM641888" ], "type": "genotype/variation", "id": "GDS4116_4" }, { "dataset_id": "GDS4116", "description": "untreated", "sample_id": [ "GSM641880", "GSM641881", "GSM641882", "GSM641883" ], "type": "protocol", "id": "GDS4116_5" }, { "dataset_id": "GDS4116", "description": "diabetogenic BDC T cell transfer", "sample_id": [ "GSM641885", "GSM641886", "GSM641887", "GSM641888", "GSM641889", "GSM641890", "GSM641891", "GSM641892" ], "type": "protocol", "id": "GDS4116_6" }, { "dataset_id": "GDS4116", "description": "B6.g7 splenocytes transfer", "sample_id": [ "GSM641884" ], "type": "protocol", "id": "GDS4116_7" }, { "dataset_id": "GDS4116", "description": "control", "sample_id": [ "GSM641880", "GSM641881", "GSM641882", "GSM641883" ], "type": "time", "id": "GDS4116_8" }, { "dataset_id": "GDS4116", "description": "24 hr", "sample_id": [ "GSM641884", "GSM641885", "GSM641886", "GSM641889" ], "type": "time", "id": "GDS4116_9" }, { "dataset_id": "GDS4116", "description": "48 hr", "sample_id": [ "GSM641887", "GSM641888", "GSM641890", "GSM641891", "GSM641892" ], "type": "time", "id": "GDS4116_10" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4116", "version": 1.0, "instances": "13", "variables": 25475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4116.tab", "compression": "gz" } ], [ [ "GDS4118.tab" ], { "title": "Tumor suppressor PTEN re-expression effect on PTEN-null embryonic fibroblasts: time course", "description": "Analysis of Pten-null (Pten\u0394loxp/\u0394loxp) mouse embryonic fibroblasts (MEFs) carrying a tet-inducible PTEN transgene, up to 48 hrs after PTEN induction. Castration resistant prostate cancer (CRPC) is associated with PTEN loss. Results provide insight into molecular basis of PTEN regulation of CRPC.", "type": "Expression profiling by array", "pubmed_id": [ "21620777", "22347425" ], "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29010", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS4118", "description": "PtenL/L (isogenic WT)", "sample_id": [ "GSM718745", "GSM718746" ], "type": "genotype/variation", "id": "GDS4118_1" }, { "dataset_id": "GDS4118", "description": "PTEN-/- with inducible PTEN transgene", "sample_id": [ "GSM718747", "GSM718748", "GSM718749", "GSM718750", "GSM718751", "GSM718752" ], "type": "genotype/variation", "id": "GDS4118_2" }, { "dataset_id": "GDS4118", "description": "no induction", "sample_id": [ "GSM718745", "GSM718746" ], "type": "agent", "id": "GDS4118_3" }, { "dataset_id": "GDS4118", "description": "doxycycline", "sample_id": [ "GSM718747", "GSM718748", "GSM718749", "GSM718750", "GSM718751", "GSM718752" ], "type": "agent", "id": "GDS4118_4" }, { "dataset_id": "GDS4118", "description": "control", "sample_id": [ "GSM718745", "GSM718746" ], "type": "time", "id": "GDS4118_5" }, { "dataset_id": "GDS4118", "description": "0 hours", "sample_id": [ "GSM718747", "GSM718748" ], "type": "time", "id": "GDS4118_6" }, { "dataset_id": "GDS4118", "description": "24 hours", "sample_id": [ "GSM718749", "GSM718750" ], "type": "time", "id": "GDS4118_7" }, { "dataset_id": "GDS4118", "description": "48 hours", "sample_id": [ "GSM718751", "GSM718752" ], "type": "time", "id": "GDS4118_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4118", "version": 1.0, "instances": "8", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4118.tab", "compression": "gz" } ], [ [ "GDS4119.tab" ], { "title": "Model for inflammatory signaling in prostate epithelium based on expression of a constitutively active version of I\u03baB kinase 2 (IKK2ca)", "description": "Analysis of prostate epithelium (PE)-PTEN+/-IKK2ca/ca and PE-PTEN+/- lateral prostates. PE-PTEN+/-IKK2ca prostates exhibit loss of smooth muscle but fail to induce invasiveness. Results provide insight into the molecular mechanism of inflammation and tumor development in the transgenic prostates.", "type": "Expression profiling by array", "pubmed_id": "21847361", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE26410", "order": "none", "update_date": "Jun 08 2012", "subsets": [ { "dataset_id": "GDS4119", "description": "PTEN+/- IKK2ca/ca", "sample_id": [ "GSM648295", "GSM648296", "GSM648297" ], "type": "genotype/variation", "id": "GDS4119_1" }, { "dataset_id": "GDS4119", "description": "PTEN+/-", "sample_id": [ "GSM648298", "GSM648299", "GSM648300" ], "type": "genotype/variation", "id": "GDS4119_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4119", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4119.tab", "compression": "gz" } ], [ [ "GDS412.tab" ], { "title": "Amyotrophic lateral sclerosis (Lou Gehrig's Disease)", "description": "Identification of amyotrophic lateral sclerosis (ALS) associated genes. Post mortem spinal cord grey matter from sporadic and familial ALS patients compared with controls. Attempt to identify mechanisms by which ALS destroys motor neurons.", "type": "Expression profiling by array", "pubmed_id": "14645737", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE833", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS412", "description": "sporadic ALS", "sample_id": [ "GSM6827", "GSM6828", "GSM6834", "GSM6835", "GSM6836" ], "type": "disease state", "id": "GDS412_1" }, { "dataset_id": "GDS412", "description": "familial ALS", "sample_id": [ "GSM6832", "GSM6833" ], "type": "disease state", "id": "GDS412_2" }, { "dataset_id": "GDS412", "description": "control", "sample_id": [ "GSM6826", "GSM6829", "GSM6830", "GSM6831" ], "type": "disease state", "id": "GDS412_3" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS412", "version": 1.0, "instances": "11", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS412.tab", "compression": "gz" } ], [ [ "GDS4120.tab" ], { "title": "Androgen deprivation effect on prostate xenograft tumor LuCaP35", "description": "NOD/SCID mice with established LuCaP35 xenografts were castrated, and tumors were isolated 4 weeks later. Androgen deprivation regresses androgen-dependent disease, but relapse often occurs in an androgen-independent manner. Results provide insight into the molecular basis of castration resistance.", "type": "Expression profiling by array", "pubmed_id": "22108827", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE33316", "order": "none", "update_date": "Jun 09 2012", "subsets": [ { "dataset_id": "GDS4120", "description": "sham control", "sample_id": [ "GSM823844", "GSM823848", "GSM823849", "GSM823850", "GSM823853" ], "type": "protocol", "id": "GDS4120_1" }, { "dataset_id": "GDS4120", "description": "surgical castration", "sample_id": [ "GSM823845", "GSM823846", "GSM823847", "GSM823851", "GSM823852" ], "type": "protocol", "id": "GDS4120_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4120", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4120.tab", "compression": "gz" } ], [ [ "GDS4121.tab" ], { "title": "Hepatocyte growth factor treatment of prostate cancer DU145 cell line: time course", "description": "Analysis of DU145 prostate cancer cells treated with hepatocyte growth factor (HGF) for up to 24 hrs. HGF receptor c-MET is specifically expressed in immature prostate cells. Results provide insight into the role of immature cells in prostate cancer by analysis of the HGF/c-MET pathway.", "type": "Expression profiling by array", "pubmed_id": "22110593", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE16659", "order": "none", "update_date": "Jun 09 2012", "subsets": [ { "dataset_id": "GDS4121", "description": "HGF", "sample_id": [ "GSM417837", "GSM417835", "GSM417839" ], "type": "agent", "id": "GDS4121_1" }, { "dataset_id": "GDS4121", "description": "control", "sample_id": [ "GSM417836", "GSM417834", "GSM417838" ], "type": "agent", "id": "GDS4121_2" }, { "dataset_id": "GDS4121", "description": "2 hours", "sample_id": [ "GSM417835", "GSM417834" ], "type": "time", "id": "GDS4121_3" }, { "dataset_id": "GDS4121", "description": "8 hours", "sample_id": [ "GSM417837", "GSM417836" ], "type": "time", "id": "GDS4121_4" }, { "dataset_id": "GDS4121", "description": "24 hours", "sample_id": [ "GSM417839", "GSM417838" ], "type": "time", "id": "GDS4121_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4121", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4121.tab", "compression": "gz" } ], [ [ "GDS4123.tab" ], { "title": "Isoflavone and 3,3\u2019-diindolylmethane effect on C4-2B prostate cancer cells", "description": "Analysis of C4-2B prostate cancer (PCa) cells treated with isoflavone (IsoF) and 3,3\u2019- diindolylmethane (B-DIM) for up to 72 hours. IsoF and B-DIM inhibited the signal transductions in PCa signaling. Results provide insight into molecular mechanisms underlying PCa growth.", "type": "Expression profiling by array", "pubmed_id": "22412975", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE35324", "order": "none", "update_date": "Jun 09 2012", "subsets": [ { "dataset_id": "GDS4123", "description": "vehicle", "sample_id": [ "GSM865961" ], "type": "agent", "id": "GDS4123_1" }, { "dataset_id": "GDS4123", "description": "B-DIM", "sample_id": [ "GSM865962", "GSM865963" ], "type": "agent", "id": "GDS4123_2" }, { "dataset_id": "GDS4123", "description": "isoflavone", "sample_id": [ "GSM865964", "GSM865965" ], "type": "agent", "id": "GDS4123_3" }, { "dataset_id": "GDS4123", "description": "control", "sample_id": [ "GSM865961" ], "type": "time", "id": "GDS4123_4" }, { "dataset_id": "GDS4123", "description": "6 hours", "sample_id": [ "GSM865962", "GSM865964" ], "type": "time", "id": "GDS4123_5" }, { "dataset_id": "GDS4123", "description": "48 hours", "sample_id": [ "GSM865963" ], "type": "time", "id": "GDS4123_6" }, { "dataset_id": "GDS4123", "description": "72 hours", "sample_id": [ "GSM865965" ], "type": "time", "id": "GDS4123_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4123", "version": 1.0, "instances": "5", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4123.tab", "compression": "gz" } ], [ [ "GDS4124.tab" ], { "title": "Genetic reprogramming of prostate cancer-associated stromal cells", "description": "Analysis of induced pluripotent stem cells (iPSCs) obtained from sorted CD90+ prostate cancer (CP)-associated stromal cells cultured and transfected with stem cell transcription factor POU5F1/LIN28/NANOG/SOX2 expression vectors. Results provide insight into the stemness of CP stromal-derived iPSCs.", "type": "Expression profiling by array", "pubmed_id": "22314551", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35373", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS4124", "description": "embryonal carcinoma NCCIT cells", "sample_id": [ "GSM867091" ], "type": "cell type", "id": "GDS4124_1" }, { "dataset_id": "GDS4124", "description": "PC-A stromal cells, sorted", "sample_id": [ "GSM867092", "GSM867094" ], "type": "cell type", "id": "GDS4124_2" }, { "dataset_id": "GDS4124", "description": "PC-A stromal cells, cultured", "sample_id": [ "GSM867093" ], "type": "cell type", "id": "GDS4124_3" }, { "dataset_id": "GDS4124", "description": "embryonic stem cells", "sample_id": [ "GSM867095" ], "type": "cell type", "id": "GDS4124_4" }, { "dataset_id": "GDS4124", "description": "iPS cells from PC-A stromal cells", "sample_id": [ "GSM867096" ], "type": "cell type", "id": "GDS4124_5" }, { "dataset_id": "GDS4124", "description": "reprogramming", "sample_id": [ "GSM867096" ], "type": "protocol", "id": "GDS4124_6" }, { "dataset_id": "GDS4124", "description": "control", "sample_id": [ "GSM867091", "GSM867092", "GSM867093", "GSM867094", "GSM867095" ], "type": "protocol", "id": "GDS4124_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4124", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4124.tab", "compression": "gz" } ], [ [ "GDS4125.tab" ], { "title": "Pten-null, K-ras-activated prostate cancer model", "description": "Analysis of prostate tumors from mutants with prostate-specific Pten loss and K-ras activation. In murine models, PTEN deletion alone fails to mimic end stage of human prostate cancer (PC). Results provide insight into cooperation between PTEN loss and RAS activation to promote EMT and metastasis.", "type": "Expression profiling by array", "pubmed_id": "22350410", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34839", "order": "none", "update_date": "Jun 10 2012", "subsets": [ { "dataset_id": "GDS4125", "description": "Pb-Cre+; PtenL/W; K-rasG12D/W", "sample_id": [ "GSM856048", "GSM856049", "GSM856050" ], "type": "genotype/variation", "id": "GDS4125_1" }, { "dataset_id": "GDS4125", "description": "Pten null", "sample_id": [ "GSM856051", "GSM856052", "GSM856053" ], "type": "genotype/variation", "id": "GDS4125_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4125", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4125.tab", "compression": "gz" } ], [ [ "GDS4129.tab" ], { "title": "Endoplasmic reticulum stress effect on lymphoblastoid cells of unrelated individuals", "description": "Analysis of immortalized B cells from 60 unrelated individuals (grandparents in the HapMap CEPH-Utah pedigrees) treated in vitro with tunicamycin to induce ER stress. ER stress induces the unfolded protein response (UPR). Results provide insight into molecular mechanisms underlying UPR response.", "type": "Expression profiling by array", "pubmed_id": "20398888", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "120", "value_type": "transformed count", "reference_series": "GSE19519", "order": "none", "update_date": "Jun 12 2012", "subsets": [ { "dataset_id": "GDS4129", "description": "tunicamycin", "sample_id": [ "GSM486735", "GSM486737", "GSM486739", "GSM486741", "GSM486743", "GSM486745", "GSM486747", "GSM486749", "GSM486751", "GSM486753", "GSM486755", "GSM486757", "GSM486759", "GSM486761", "GSM486763", "GSM486765", "GSM486767", "GSM486769", "GSM486771", "GSM486773", "GSM486775", "GSM486777", "GSM486779", "GSM486781", "GSM486783", "GSM486785", "GSM486787", "GSM486789", "GSM486791", "GSM486793", "GSM486795", "GSM486797", "GSM486799", "GSM486801", "GSM486803", "GSM486805", "GSM486807", "GSM486809", "GSM486811", "GSM486813", "GSM486815", "GSM486817", "GSM486819", "GSM486822", "GSM486824", "GSM486828", "GSM486831", "GSM486833", "GSM486835", "GSM486837", "GSM486839", "GSM486841", "GSM486843", "GSM486845", "GSM486847", "GSM486849", "GSM486851", "GSM486853", "GSM486855", "GSM486857" ], "type": "agent", "id": "GDS4129_1" }, { "dataset_id": "GDS4129", "description": "control", "sample_id": [ "GSM486736", "GSM486738", "GSM486740", "GSM486742", "GSM486744", "GSM486746", "GSM486748", "GSM486750", "GSM486752", "GSM486754", "GSM486756", "GSM486758", "GSM486760", "GSM486762", "GSM486764", "GSM486766", "GSM486768", "GSM486770", "GSM486772", "GSM486774", "GSM486776", "GSM486778", "GSM486780", "GSM486782", "GSM486784", "GSM486786", "GSM486788", "GSM486790", "GSM486792", "GSM486794", "GSM486796", "GSM486798", "GSM486800", "GSM486802", "GSM486804", "GSM486806", "GSM486808", "GSM486810", "GSM486812", "GSM486814", "GSM486816", "GSM486818", "GSM486821", "GSM486823", "GSM486826", "GSM486830", "GSM486832", "GSM486834", "GSM486836", "GSM486838", "GSM486840", "GSM486842", "GSM486844", "GSM486846", "GSM486848", "GSM486850", "GSM486852", "GSM486854", "GSM486856", "GSM486858" ], "type": "agent", "id": "GDS4129_2" }, { "dataset_id": "GDS4129", "description": "1", "sample_id": [ "GSM486735", "GSM486736" ], "type": "individual", "id": "GDS4129_3" }, { "dataset_id": "GDS4129", "description": "2", "sample_id": [ "GSM486737", "GSM486738" ], "type": "individual", "id": "GDS4129_4" }, { "dataset_id": "GDS4129", "description": "3", "sample_id": [ "GSM486739", "GSM486740" ], "type": "individual", "id": "GDS4129_5" }, { "dataset_id": "GDS4129", "description": "4", "sample_id": [ "GSM486741", "GSM486742" ], "type": "individual", "id": "GDS4129_6" }, { "dataset_id": "GDS4129", "description": "5", "sample_id": [ "GSM486743", "GSM486744" ], "type": "individual", "id": "GDS4129_7" }, { "dataset_id": "GDS4129", "description": "6", "sample_id": [ "GSM486745", "GSM486746" ], "type": "individual", "id": "GDS4129_8" }, { "dataset_id": "GDS4129", "description": "7", "sample_id": [ "GSM486747", "GSM486748" ], "type": "individual", "id": "GDS4129_9" }, { "dataset_id": "GDS4129", "description": "8", "sample_id": [ "GSM486749", "GSM486750" ], "type": "individual", "id": "GDS4129_10" }, { "dataset_id": "GDS4129", "description": "9", "sample_id": [ "GSM486751", "GSM486752" ], "type": "individual", "id": "GDS4129_11" }, { "dataset_id": "GDS4129", "description": "10", "sample_id": [ "GSM486753", "GSM486754" ], "type": "individual", "id": "GDS4129_12" }, { "dataset_id": "GDS4129", "description": "11", "sample_id": [ "GSM486755", "GSM486756" ], "type": "individual", "id": "GDS4129_13" }, { "dataset_id": "GDS4129", "description": "12", "sample_id": [ "GSM486757", "GSM486758" ], "type": "individual", "id": "GDS4129_14" }, { "dataset_id": "GDS4129", "description": "13", "sample_id": [ "GSM486759", "GSM486760" ], "type": "individual", "id": "GDS4129_15" }, { "dataset_id": "GDS4129", "description": "14", "sample_id": [ "GSM486761", "GSM486762" ], "type": "individual", "id": "GDS4129_16" }, { "dataset_id": "GDS4129", "description": "15", "sample_id": [ "GSM486763", "GSM486764" ], "type": "individual", "id": "GDS4129_17" }, { "dataset_id": "GDS4129", "description": "16", "sample_id": [ "GSM486765", "GSM486766" ], "type": "individual", "id": "GDS4129_18" }, { "dataset_id": "GDS4129", "description": "17", "sample_id": [ "GSM486767", "GSM486768" ], "type": "individual", "id": "GDS4129_19" }, { "dataset_id": "GDS4129", "description": "18", "sample_id": [ "GSM486769", "GSM486770" ], "type": "individual", "id": "GDS4129_20" }, { "dataset_id": "GDS4129", "description": "19", "sample_id": [ "GSM486771", "GSM486772" ], "type": "individual", "id": "GDS4129_21" }, { "dataset_id": "GDS4129", "description": "20", "sample_id": [ "GSM486773", "GSM486774" ], "type": "individual", "id": "GDS4129_22" }, { 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"sample_id": [ "GSM486789", "GSM486790" ], "type": "individual", "id": "GDS4129_30" }, { "dataset_id": "GDS4129", "description": "29", "sample_id": [ "GSM486791", "GSM486792" ], "type": "individual", "id": "GDS4129_31" }, { "dataset_id": "GDS4129", "description": "30", "sample_id": [ "GSM486793", "GSM486794" ], "type": "individual", "id": "GDS4129_32" }, { "dataset_id": "GDS4129", "description": "31", "sample_id": [ "GSM486795", "GSM486796" ], "type": "individual", "id": "GDS4129_33" }, { "dataset_id": "GDS4129", "description": "32", "sample_id": [ "GSM486797", "GSM486798" ], "type": "individual", "id": "GDS4129_34" }, { "dataset_id": "GDS4129", "description": "33", "sample_id": [ "GSM486799", "GSM486800" ], "type": "individual", "id": "GDS4129_35" }, { "dataset_id": "GDS4129", "description": "34", "sample_id": [ "GSM486801", "GSM486802" ], "type": "individual", "id": "GDS4129_36" }, { "dataset_id": "GDS4129", "description": "35", "sample_id": [ "GSM486803", "GSM486804" ], "type": 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"GSM486837", "GSM486838" ], "type": "individual", "id": "GDS4129_52" }, { "dataset_id": "GDS4129", "description": "51", "sample_id": [ "GSM486839", "GSM486840" ], "type": "individual", "id": "GDS4129_53" }, { "dataset_id": "GDS4129", "description": "52", "sample_id": [ "GSM486841", "GSM486842" ], "type": "individual", "id": "GDS4129_54" }, { "dataset_id": "GDS4129", "description": "53", "sample_id": [ "GSM486843", "GSM486844" ], "type": "individual", "id": "GDS4129_55" }, { "dataset_id": "GDS4129", "description": "54", "sample_id": [ "GSM486845", "GSM486846" ], "type": "individual", "id": "GDS4129_56" }, { "dataset_id": "GDS4129", "description": "55", "sample_id": [ "GSM486847", "GSM486848" ], "type": "individual", "id": "GDS4129_57" }, { "dataset_id": "GDS4129", "description": "56", "sample_id": [ "GSM486849", "GSM486850" ], "type": "individual", "id": "GDS4129_58" }, { "dataset_id": "GDS4129", "description": "57", "sample_id": [ "GSM486851", "GSM486852" ], "type": "individual", "id": "GDS4129_59" }, { "dataset_id": "GDS4129", "description": "58", "sample_id": [ "GSM486853", "GSM486854" ], "type": "individual", "id": "GDS4129_60" }, { "dataset_id": "GDS4129", "description": "59", "sample_id": [ "GSM486855", "GSM486856" ], "type": "individual", "id": "GDS4129_61" }, { "dataset_id": "GDS4129", "description": "60", "sample_id": [ "GSM486857", "GSM486858" ], "type": "individual", "id": "GDS4129_62" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4129", "version": 1.0, "instances": "120", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4129.tab", "compression": "gz" } ], [ [ "GDS413.tab" ], { "title": "Circadian rhythm in Clock and Cry mutants", "description": "Identification of CLOCK and CRY-regulated genes expressed in circadian manner in liver. Wild-type, Clock mutant and Cry-deficient C57BL/6 8-10 week old male mice examined at circadian times (CT) 14 and 2.", "type": "Expression profiling by array", "pubmed_id": "12865428", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE454", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS413", "description": "wild type", "sample_id": [ "GSM6792", "GSM6793" ], "type": "strain", "id": "GDS413_1" }, { "dataset_id": "GDS413", "description": "Clock mutant", "sample_id": [ "GSM6794", "GSM6795" ], "type": "strain", "id": "GDS413_2" }, { "dataset_id": "GDS413", "description": "Cry-deficient", "sample_id": [ "GSM6796", "GSM6797" ], "type": "strain", "id": "GDS413_3" }, { "dataset_id": "GDS413", "description": "circadian time 2", "sample_id": [ "GSM6792", "GSM6794", "GSM6796" ], "type": "time", "id": "GDS413_4" }, { "dataset_id": "GDS413", "description": "circadian time 14", "sample_id": [ "GSM6793", "GSM6795", "GSM6797" ], "type": "time", "id": "GDS413_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS413", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS413.tab", "compression": "gz" } ], [ [ "GDS4130.tab" ], { "title": "Endoplasmic reticulum stress effect on lymphoblastoid cells of monozygotic twins", "description": "Analysis of immortalized B cells from MZ twin pairs (14 of European ancestry, 12 African American) treated in vitro with thapsigargin to induce ER stress. ER stress induces the unfolded protein response (UPR). Results provide insight into the molecular basis of the UPR response within twin pairs.", "type": "Expression profiling by array", "pubmed_id": "20398888", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "104", "value_type": "transformed count", "reference_series": "GSE19519", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4130", "description": "control", "sample_id": [ "GSM494500", "GSM494502", "GSM494504", "GSM494506", "GSM494508", "GSM494510", "GSM494512", "GSM494514", "GSM494516", "GSM494518", "GSM494452", "GSM494454", "GSM494520", "GSM494522", "GSM494524", "GSM494526", "GSM494456", "GSM494458", "GSM494460", "GSM494462", "GSM494528", "GSM494530", "GSM494464", "GSM494466", "GSM494468", "GSM494470", "GSM494532", "GSM494534", "GSM494472", "GSM494474", "GSM494476", "GSM494478", "GSM494480", "GSM494482", "GSM494536", "GSM494538", "GSM494484", "GSM494486", "GSM494540", "GSM494542", "GSM494488", "GSM494490", "GSM494492", "GSM494494", "GSM494544", "GSM494546", "GSM494548", "GSM494550", "GSM494496", "GSM494498", "GSM494552", "GSM494554" ], "type": "agent", "id": "GDS4130_1" }, { "dataset_id": "GDS4130", "description": "thapsigargin", "sample_id": [ "GSM494501", "GSM494503", "GSM494505", "GSM494507", "GSM494509", "GSM494511", "GSM494513", "GSM494515", "GSM494517", "GSM494519", "GSM494453", "GSM494455", "GSM494521", "GSM494523", "GSM494525", "GSM494527", "GSM494457", "GSM494459", "GSM494461", "GSM494463", "GSM494529", "GSM494531", "GSM494465", "GSM494467", "GSM494469", "GSM494471", "GSM494533", "GSM494535", "GSM494473", "GSM494475", "GSM494477", "GSM494479", "GSM494481", "GSM494483", "GSM494537", "GSM494539", "GSM494485", "GSM494487", "GSM494541", "GSM494543", "GSM494489", "GSM494491", "GSM494493", "GSM494495", "GSM494545", "GSM494547", "GSM494549", "GSM494551", "GSM494497", "GSM494499", "GSM494553", "GSM494555" ], "type": "agent", "id": "GDS4130_2" }, { "dataset_id": "GDS4130", "description": "family 1712", "sample_id": [ "GSM494452", "GSM494453", "GSM494454", "GSM494455" ], "type": "other", "id": "GDS4130_3" }, { "dataset_id": "GDS4130", "description": "family 1717", "sample_id": [ "GSM494456", "GSM494457", "GSM494458", "GSM494459" ], "type": "other", "id": "GDS4130_4" }, { "dataset_id": "GDS4130", "description": "family 1720", "sample_id": [ "GSM494460", "GSM494461", "GSM494462", "GSM494463" ], "type": "other", "id": "GDS4130_5" }, { "dataset_id": "GDS4130", "description": "family 1724", "sample_id": [ "GSM494464", "GSM494465", "GSM494466", "GSM494467" ], "type": "other", "id": "GDS4130_6" }, { "dataset_id": "GDS4130", "description": "family 1725", "sample_id": [ "GSM494468", "GSM494469", "GSM494470", "GSM494471" ], "type": "other", "id": "GDS4130_7" }, { "dataset_id": "GDS4130", "description": "family 1727", "sample_id": [ "GSM494472", "GSM494473", "GSM494474", "GSM494475" ], "type": "other", "id": "GDS4130_8" }, { "dataset_id": "GDS4130", "description": "family 1733", "sample_id": [ "GSM494476", "GSM494477", "GSM494478", "GSM494479" ], "type": "other", "id": "GDS4130_9" }, { "dataset_id": "GDS4130", "description": "family 1734", "sample_id": [ "GSM494480", "GSM494481", "GSM494482", "GSM494483" ], "type": "other", "id": "GDS4130_10" }, { "dataset_id": "GDS4130", "description": "family 1736", "sample_id": [ "GSM494484", "GSM494485", "GSM494486", "GSM494487" ], "type": "other", "id": "GDS4130_11" }, { "dataset_id": "GDS4130", "description": "family 1743", "sample_id": [ "GSM494488", "GSM494489", "GSM494490", "GSM494491" ], "type": "other", "id": "GDS4130_12" }, { "dataset_id": "GDS4130", "description": "family 1744", "sample_id": [ "GSM494492", "GSM494493", "GSM494494", "GSM494495" ], "type": "other", "id": "GDS4130_13" }, { "dataset_id": "GDS4130", "description": "family 1757", "sample_id": [ "GSM494496", "GSM494497", "GSM494498", "GSM494499" ], "type": "other", "id": "GDS4130_14" }, { "dataset_id": "GDS4130", "description": "family 1700", "sample_id": [ "GSM494500", "GSM494501", "GSM494502", "GSM494503" ], "type": "other", "id": "GDS4130_15" }, { "dataset_id": "GDS4130", "description": "family 1704", "sample_id": [ "GSM494504", "GSM494505", "GSM494506", "GSM494507" ], "type": "other", "id": "GDS4130_16" }, { "dataset_id": "GDS4130", "description": "family 1705", "sample_id": [ "GSM494508", "GSM494509", "GSM494510", "GSM494511" ], "type": "other", "id": "GDS4130_17" }, { "dataset_id": "GDS4130", "description": "family 1706", "sample_id": [ "GSM494512", "GSM494513", "GSM494514", "GSM494515" ], "type": "other", "id": "GDS4130_18" }, { "dataset_id": "GDS4130", "description": "family 1710", "sample_id": [ "GSM494516", "GSM494517", "GSM494518", "GSM494519" ], "type": "other", "id": "GDS4130_19" }, { "dataset_id": "GDS4130", "description": "family 1715", "sample_id": [ "GSM494520", "GSM494521", "GSM494522", "GSM494523" ], "type": "other", "id": "GDS4130_20" }, { "dataset_id": "GDS4130", "description": "family 1716", "sample_id": [ "GSM494524", "GSM494525", "GSM494526", "GSM494527" ], "type": "other", "id": "GDS4130_21" }, { "dataset_id": "GDS4130", "description": "family 1721", "sample_id": [ "GSM494528", "GSM494529", "GSM494530", "GSM494531" ], "type": "other", "id": "GDS4130_22" }, { "dataset_id": "GDS4130", "description": "family 1726", "sample_id": [ "GSM494532", "GSM494533", "GSM494534", "GSM494535" ], "type": "other", "id": "GDS4130_23" }, { "dataset_id": "GDS4130", "description": "family 1735", "sample_id": [ "GSM494536", "GSM494537", "GSM494538", "GSM494539" ], "type": "other", "id": "GDS4130_24" }, { "dataset_id": "GDS4130", "description": "family 1740", "sample_id": [ "GSM494540", "GSM494541", "GSM494542", "GSM494543" ], "type": "other", "id": "GDS4130_25" }, { "dataset_id": "GDS4130", "description": "family 1752", "sample_id": [ "GSM494544", "GSM494545", "GSM494546", "GSM494547" ], "type": "other", "id": "GDS4130_26" }, { "dataset_id": "GDS4130", "description": "family 1756", "sample_id": [ "GSM494548", "GSM494549", "GSM494550", "GSM494551" ], "type": "other", "id": "GDS4130_27" }, { "dataset_id": "GDS4130", "description": "family REQ115", "sample_id": [ "GSM494552", "GSM494553", "GSM494554", "GSM494555" ], "type": "other", "id": "GDS4130_28" }, { "dataset_id": "GDS4130", "description": "twin 1", "sample_id": [ "GSM494452", "GSM494453", "GSM494456", "GSM494457", "GSM494460", "GSM494461", "GSM494464", "GSM494465", "GSM494468", "GSM494469", "GSM494472", "GSM494473", "GSM494476", "GSM494477", "GSM494480", "GSM494481", "GSM494484", "GSM494485", "GSM494488", "GSM494489", "GSM494492", "GSM494493", "GSM494496", "GSM494497", "GSM494500", "GSM494501", "GSM494504", "GSM494505", "GSM494508", "GSM494509", "GSM494512", "GSM494513", "GSM494516", "GSM494517", "GSM494520", "GSM494521", "GSM494524", "GSM494525", "GSM494528", "GSM494529", "GSM494532", "GSM494533", "GSM494536", "GSM494537", "GSM494540", "GSM494541", "GSM494544", "GSM494545", "GSM494548", "GSM494549", "GSM494552", "GSM494553" ], "type": "individual", "id": "GDS4130_29" }, { "dataset_id": "GDS4130", "description": "twin 2", "sample_id": [ "GSM494454", "GSM494455", "GSM494458", "GSM494459", "GSM494462", "GSM494463", "GSM494466", "GSM494467", "GSM494470", "GSM494471", "GSM494474", "GSM494475", "GSM494478", "GSM494479", "GSM494482", "GSM494483", "GSM494486", "GSM494487", "GSM494490", "GSM494491", "GSM494494", "GSM494495", "GSM494498", "GSM494499", "GSM494502", "GSM494503", "GSM494506", "GSM494507", "GSM494510", "GSM494511", "GSM494514", "GSM494515", "GSM494518", "GSM494519", "GSM494522", "GSM494523", "GSM494526", "GSM494527", "GSM494530", "GSM494531", "GSM494534", "GSM494535", "GSM494538", "GSM494539", "GSM494542", "GSM494543", "GSM494546", "GSM494547", "GSM494550", "GSM494551", "GSM494554", "GSM494555" ], "type": "individual", "id": "GDS4130_30" }, { "dataset_id": "GDS4130", "description": "African American ancestry", "sample_id": [ "GSM494498", "GSM494499", "GSM494496", "GSM494497", "GSM494494", "GSM494495", "GSM494492", "GSM494493", "GSM494490", "GSM494491", "GSM494488", "GSM494489", "GSM494486", "GSM494487", "GSM494484", "GSM494485", "GSM494482", "GSM494483", "GSM494480", "GSM494481", "GSM494478", "GSM494479", "GSM494476", "GSM494477", "GSM494474", "GSM494475", "GSM494472", "GSM494473", "GSM494470", "GSM494471", "GSM494468", "GSM494469", "GSM494466", "GSM494467", "GSM494464", "GSM494465", "GSM494462", "GSM494463", "GSM494460", "GSM494461", "GSM494458", "GSM494459", "GSM494456", "GSM494457", "GSM494454", "GSM494455", "GSM494452", "GSM494453" ], "type": "genotype/variation", "id": "GDS4130_31" }, { "dataset_id": "GDS4130", "description": "European ancestry", "sample_id": [ "GSM494554", "GSM494555", "GSM494552", "GSM494553", "GSM494550", "GSM494551", "GSM494548", "GSM494549", "GSM494546", "GSM494547", "GSM494544", "GSM494545", "GSM494542", "GSM494543", "GSM494540", "GSM494541", "GSM494538", "GSM494539", "GSM494536", "GSM494537", "GSM494534", "GSM494535", "GSM494532", "GSM494533", "GSM494530", "GSM494531", "GSM494528", "GSM494529", "GSM494526", "GSM494527", "GSM494524", "GSM494525", "GSM494522", "GSM494523", "GSM494520", "GSM494521", "GSM494518", "GSM494519", "GSM494516", "GSM494517", "GSM494514", "GSM494515", "GSM494512", "GSM494513", "GSM494510", "GSM494511", "GSM494508", "GSM494509", "GSM494506", "GSM494507", "GSM494504", "GSM494505", "GSM494502", "GSM494503", "GSM494500", "GSM494501" ], "type": "genotype/variation", "id": "GDS4130_32" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4130", "version": 1.0, "instances": "104", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4130.tab", "compression": "gz" } ], [ [ "GDS4132.tab" ], { "title": "PPAR-\u03b3 agonist pioglitazone effect on obese women with polycystic ovary syndrome: skeletal muscle", "description": "Analysis of skeletal muscle from obese women with polycystic ovary syndrome (PCOS) before and after thiazolidinedione (TZD) pioglitazone treatment. TZDs improve metabolic disturbances in PCOS patients. Results provide insight into the molecular mechanisms underlying the effect of TZD in PCOS.", "type": "Expression profiling by array", "pubmed_id": "18560589", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE8157", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4132", "description": "pretreatment", "sample_id": [ "GSM201542", "GSM201543", "GSM201544", "GSM201545", "GSM201829", "GSM201830", "GSM201831", "GSM201832", "GSM201833", "GSM201834" ], "type": "agent", "id": "GDS4132_1" }, { "dataset_id": "GDS4132", "description": "pioglitazone", "sample_id": [ "GSM201835", "GSM201836", "GSM201837", "GSM201838", "GSM201839", "GSM201840", "GSM201841", "GSM201842", "GSM201843", "GSM201844" ], "type": "agent", "id": "GDS4132_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4132", "version": 1.0, "instances": "20", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4132.tab", "compression": "gz" } ], [ [ "GDS4133.tab" ], { "title": "Obese women with polycystic ovary syndrome and obese, healthy women: skeletal muscle", "description": "Analysis of skeletal muscle from obese women with polycystic ovary syndrome (PCOS) and obese, healthy women. Results provide insight into whether pioglitazone ameliorates preexisting abnormalities in PCOS patients.", "type": "Expression profiling by array", "pubmed_id": "18560589", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE8157", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4133", "description": "obese healthy controls", "sample_id": [ "GSM201849", "GSM201850", "GSM201851", "GSM201852", "GSM201853", "GSM201854", "GSM201855", "GSM201856", "GSM201857", "GSM201858", "GSM201859", "GSM201861", "GSM201862" ], "type": "disease state", "id": "GDS4133_1" }, { "dataset_id": "GDS4133", "description": "polycystic ovary syndrome", "sample_id": [ "GSM201863", "GSM201864", "GSM201865", "GSM201866", "GSM201867", "GSM201868", "GSM201869", "GSM201870", "GSM201871", "GSM201872" ], "type": "disease state", "id": "GDS4133_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4133", "version": 1.0, "instances": "23", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4133.tab", "compression": "gz" } ], [ [ "GDS4134.tab" ], { "title": "Amyloid precursor protein double mutant and amyloid precursor-like protein 2 deficiency effects on adult brain regions", "description": "Analysis of prefrontal cortices and hippocampi from C57BL/6 adults: APLP2-KO (APLP2-/-) or APPs\u03b1-DM (APP\u03b1/\u03b1APLP2-/-). Amyloid precursor protein (APP) and AP-like protein 2 (APLP2) play key roles in Alzheimer pathogenesis. Results provide mechanistic insights into APP/APLP2-mediated functions.", "type": "Expression profiling by array", "pubmed_id": "21522131", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE27888", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4134", "description": "prefrontal cortex", "sample_id": [ "GSM688773", "GSM688775", "GSM688777", "GSM688779", "GSM688781", "GSM688783" ], "type": "tissue", "id": "GDS4134_1" }, { "dataset_id": "GDS4134", "description": "hippocampus", "sample_id": [ "GSM688774", "GSM688776", "GSM688778", "GSM688780", "GSM688782", "GSM688784" ], "type": "tissue", "id": "GDS4134_2" }, { "dataset_id": "GDS4134", "description": "APPs\u03b1-DM", "sample_id": [ "GSM688784", "GSM688782", "GSM688780", "GSM688783", "GSM688781", "GSM688779" ], "type": "genotype/variation", "id": "GDS4134_3" }, { "dataset_id": "GDS4134", "description": "APLP2-KO", "sample_id": [ "GSM688778", "GSM688776", "GSM688774", "GSM688777", "GSM688775", "GSM688773" ], "type": "genotype/variation", "id": "GDS4134_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4134", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4134.tab", "compression": "gz" } ], [ [ "GDS4135.tab" ], { "title": "Postmortem temporal cortex from Medical Research Council Cognitive Function and Ageing Study (MRC-CFAS) cohort: astrocytes", "description": "Analysis of GFAP+ astrocytes representing different Braak stages and ApoE genotypes, in post-mortem temporal cortex samples. Astrocytes synthesize ApoE, which is involved in the astrocytic clearance of aggregated \u03b2-amyloid plaques. Results provide insight into role of ApoE in Alzheimer's pathology.", "type": "Expression profiling by array", "pubmed_id": "21705112", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE29652", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4135", "description": "Braak stage I-II", "sample_id": [ "GSM735094", "GSM735095", "GSM735096", "GSM735097", "GSM735098", "GSM735099" ], "type": "disease state", "id": "GDS4135_1" }, { "dataset_id": "GDS4135", "description": "Braak stage III-IV", "sample_id": [ "GSM735100", "GSM735101", "GSM735102", "GSM735103", "GSM735104", "GSM735105" ], "type": "disease state", "id": "GDS4135_2" }, { "dataset_id": "GDS4135", "description": "Braak stage V-VI", "sample_id": [ "GSM735106", "GSM735107", "GSM735108", "GSM735109", "GSM735110", "GSM735111" ], "type": "disease state", "id": "GDS4135_3" }, { "dataset_id": "GDS4135", "description": "ApoE \u03b54 -", "sample_id": [ "GSM735098", "GSM735099", "GSM735097", "GSM735104", "GSM735105", "GSM735103", "GSM735109", "GSM735110", "GSM735111" ], "type": "genotype/variation", "id": "GDS4135_4" }, { "dataset_id": "GDS4135", "description": "ApoE \u03b54 +", "sample_id": [ "GSM735095", "GSM735096", "GSM735094", "GSM735101", "GSM735102", "GSM735100", "GSM735107", "GSM735108", "GSM735106" ], "type": "genotype/variation", "id": "GDS4135_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4135", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4135.tab", "compression": "gz" } ], [ [ "GDS4136.tab" ], { "title": "Various stages of Alzheimer's disease: laser-captured hippocampal CA1 gray matter", "description": "Analysis of laser-captured hippocampal CA1 gray matter from FFPE hippocampal sections of subjects at varying stages (incipient, moderate, severe) of Alzheimer\u2019s disease (AD). Results provide insight into gray matter-specific molecular mechanisms underlying AD.", "type": "Expression profiling by array", "pubmed_id": "21756998", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE28146", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4136", "description": "65 years old", "sample_id": [ "GSM697332" ], "type": "age", "id": "GDS4136_1" }, { "dataset_id": "GDS4136", "description": "75 years old", "sample_id": [ "GSM697312" ], "type": "age", "id": "GDS4136_2" }, { "dataset_id": "GDS4136", "description": "79 years old", "sample_id": [ "GSM697327", "GSM697334", "GSM697336" ], "type": "age", "id": "GDS4136_3" }, { "dataset_id": "GDS4136", "description": "80 years old", "sample_id": [ "GSM697309", "GSM697311" ], "type": "age", "id": "GDS4136_4" }, { "dataset_id": "GDS4136", "description": "81 years old", "sample_id": [ "GSM697328" ], "type": "age", "id": "GDS4136_5" }, { "dataset_id": "GDS4136", "description": "82 years old", "sample_id": [ "GSM697326", "GSM697330" ], "type": "age", "id": "GDS4136_6" }, { "dataset_id": "GDS4136", "description": "83 years old", "sample_id": [ "GSM697318", "GSM697325" ], "type": "age", "id": "GDS4136_7" }, { "dataset_id": "GDS4136", "description": "85 years old", "sample_id": [ "GSM697308", "GSM697323", "GSM697331" ], "type": "age", "id": "GDS4136_8" }, { "dataset_id": "GDS4136", "description": "86 years old", "sample_id": [ "GSM697329" ], "type": "age", "id": "GDS4136_9" }, { "dataset_id": "GDS4136", "description": "87 years old", "sample_id": [ "GSM697315" ], "type": "age", "id": "GDS4136_10" }, { "dataset_id": "GDS4136", "description": "88 years old", "sample_id": [ "GSM697319", "GSM697321" ], "type": "age", "id": "GDS4136_11" }, { "dataset_id": "GDS4136", "description": "89 years old", "sample_id": [ "GSM697324" ], "type": "age", "id": "GDS4136_12" }, { "dataset_id": "GDS4136", "description": "91 years old", "sample_id": [ "GSM697320" ], "type": "age", "id": "GDS4136_13" }, { "dataset_id": "GDS4136", "description": "92 years old", "sample_id": [ "GSM697310" ], "type": "age", "id": "GDS4136_14" }, { "dataset_id": "GDS4136", "description": "93 years old", "sample_id": [ "GSM697333", "GSM697337" ], "type": "age", "id": "GDS4136_15" }, { "dataset_id": "GDS4136", "description": "94 years old", "sample_id": [ "GSM697335" ], "type": "age", "id": "GDS4136_16" }, { "dataset_id": "GDS4136", "description": "95 years old", "sample_id": [ "GSM697314", "GSM697317" ], "type": "age", "id": "GDS4136_17" }, { "dataset_id": "GDS4136", "description": "97 years old", "sample_id": [ "GSM697313", "GSM697322" ], "type": "age", "id": "GDS4136_18" }, { "dataset_id": "GDS4136", "description": "101 years old", "sample_id": [ "GSM697316" ], "type": "age", "id": "GDS4136_19" }, { "dataset_id": "GDS4136", "description": "control", "sample_id": [ "GSM697308", "GSM697309", "GSM697310", "GSM697311", "GSM697312", "GSM697313", "GSM697314", "GSM697315" ], "type": "disease state", "id": "GDS4136_20" }, { "dataset_id": "GDS4136", "description": "incipient stage", "sample_id": [ "GSM697316", "GSM697317", "GSM697318", "GSM697319", "GSM697320", "GSM697321", "GSM697322" ], "type": "disease state", "id": "GDS4136_21" }, { "dataset_id": "GDS4136", "description": "moderate stage", "sample_id": [ "GSM697323", "GSM697324", "GSM697325", "GSM697326", "GSM697327", "GSM697328", "GSM697329", "GSM697330" ], "type": "disease state", "id": "GDS4136_22" }, { "dataset_id": "GDS4136", "description": "severe stage", "sample_id": [ "GSM697331", "GSM697332", "GSM697333", "GSM697334", "GSM697335", "GSM697336", "GSM697337" ], "type": "disease state", "id": "GDS4136_23" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4136", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4136.tab", "compression": "gz" } ], [ [ "GDS4137.tab" ], { "title": "Nasu-Hakola disease model: DAP12 knockdown THP-1 clones", "description": "Analysis of DAP12-deficient acute monocytic leukemia THP-1 cells that serve as a model of NHD, following treatment with 12-myristate 13-acetate (PMA). PMA is a known inducer of morphological differentiation of THP-1 cells. Results provide insight into molecular mechanisms underlying NHD pathology.", "type": "Expression profiling by array", "pubmed_id": "22080356", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE33503", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4137", "description": "control", "sample_id": [ "GSM828845", "GSM828846" ], "type": "genotype/variation", "id": "GDS4137_1" }, { "dataset_id": "GDS4137", "description": "DAP12 knockdown", "sample_id": [ "GSM828847", "GSM828848" ], "type": "genotype/variation", "id": "GDS4137_2" }, { "dataset_id": "GDS4137", "description": "DMSO", "sample_id": [ "GSM828845", "GSM828847" ], "type": "agent", "id": "GDS4137_3" }, { "dataset_id": "GDS4137", "description": "PMA", "sample_id": [ "GSM828846", "GSM828848" ], "type": "agent", "id": "GDS4137_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4137", "version": 1.0, "instances": "4", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4137.tab", "compression": "gz" } ], [ [ "GDS4138.tab" ], { "title": "Proteasomal inhibitor lactacystin effect on cortical neurons in vitro: time course (MG_U74A)", "description": "Analysis of cultured cortical neurons treated with 1uM lactacystin for up to 48 hr. Lactacystin induces neuronal apoptosis. Results provide insight into molecular mechanisms underlying proteasomal inhibition-induced neuronal death.", "type": "Expression profiling by array", "pubmed_id": "20683911", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE22465", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS4138", "description": "control", "sample_id": [ "GSM566704", "GSM566705" ], "type": "agent", "id": "GDS4138_1" }, { "dataset_id": "GDS4138", "description": "lactacystin", "sample_id": [ "GSM566706", "GSM566707" ], "type": "agent", "id": "GDS4138_2" }, { "dataset_id": "GDS4138", "description": "24 hours", "sample_id": [ "GSM566704", "GSM566706" ], "type": "time", "id": "GDS4138_3" }, { "dataset_id": "GDS4138", "description": "48 hours", "sample_id": [ "GSM566705", "GSM566707" ], "type": "time", "id": "GDS4138_4" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS4138", "version": 1.0, "instances": "4", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4138.tab", "compression": "gz" } ], [ [ "GDS414.tab" ], { "title": "Ethylene treatment in seedlings", "description": "Effect of ethylene treatment on 3 day old etiolated wild type Columbia-0 Arabidopsis seedlings.", "type": "Expression profiling by array", "pubmed_id": "12893945", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE537", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS414", "description": "ethylene", "sample_id": [ "GSM8471", "GSM8472", "GSM8473", "GSM8474" ], "type": "agent", "id": "GDS414_1" }, { "dataset_id": "GDS414", "description": "air", "sample_id": [ "GSM8467", "GSM8468", "GSM8469", "GSM8470" ], "type": "agent", "id": "GDS414_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS414", "version": 1.0, "instances": "8", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS414.tab", "compression": "gz" } ], [ [ "GDS4140.tab" ], { "title": "Proteasomal inhibitor lactacystin effect on cortical neurons in vitro: time course (MG_U74Av2)", "description": "Analysis of cultured cortical neurons treated with 1uM lactacystin for up to 48 hr. Lactacystin induces neuronal apoptosis. Results provide insight into molecular mechanisms underlying proteasomal inhibition-induced neuronal death.", "type": "Expression profiling by array", "pubmed_id": "20683911", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE22465", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS4140", "description": "control", "sample_id": [ "GSM558054", "GSM558055" ], "type": "agent", "id": "GDS4140_1" }, { "dataset_id": "GDS4140", "description": "lactacystin", "sample_id": [ "GSM558056", "GSM558057", "GSM558058", "GSM558059" ], "type": "agent", "id": "GDS4140_2" }, { "dataset_id": "GDS4140", "description": "24 hours", "sample_id": [ "GSM558054", "GSM558056", "GSM558057" ], "type": "time", "id": "GDS4140_3" }, { "dataset_id": "GDS4140", "description": "48 hours", "sample_id": [ "GSM558055", "GSM558058", "GSM558059" ], "type": "time", "id": "GDS4140_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS4140", "version": 1.0, "instances": "6", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4140.tab", "compression": "gz" } ], [ [ "GDS4141.tab" ], { "title": "Alzheimer's disease: induced pluripotent stem cells with Presenilin 2 mutation (N141)", "description": "Analysis of 2 iPSC clones with presenilin 2 (PS2) mutation N141, established by retroviral transduction of fibroblasts from a Familial Alzheimer\u2019s disease (FAD) patient. PS2 mutations are causative factors for autosomal-dominant early-onset FAD. Results provide insight into molecular basis of FAD.", "type": "Expression profiling by array", "pubmed_id": "21900357", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE28379", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS4141", "description": "control IPSCs", "sample_id": [ "GSM701542" ], "type": "cell line", "id": "GDS4141_1" }, { "dataset_id": "GDS4141", "description": "Sporadic PD-derived iPSCs", "sample_id": [ "GSM701543" ], "type": "cell line", "id": "GDS4141_2" }, { "dataset_id": "GDS4141", "description": "presenilin 2 (PS2) iPSCs", "sample_id": [ "GSM701544", "GSM701545" ], "type": "cell line", "id": "GDS4141_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4141", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4141.tab", "compression": "gz" } ], [ [ "GDS4142.tab" ], { "title": "Perforin 1 polymorphism effect on male patients with primary progressive multiple sclerosis: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from primary-progressive multiple sclerosis (PPMS) male patients carrying risk (GAA/AGA) or protective (AGA/AGA) perforin 1 (PRF1) haplotypes. Results provide insight into associations between PRF1 polymorphisms and male patients with MS, particularly male patients with PPMS.", "type": "Expression profiling by array", "pubmed_id": "20921521", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE23205", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS4142", "description": "protective haplotype: AGA/AGA", "sample_id": [ "GSM570896", "GSM570897", "GSM570898", "GSM570899" ], "type": "genotype/variation", "id": "GDS4142_1" }, { "dataset_id": "GDS4142", "description": "risk haplotype: AGG/GAA", "sample_id": [ "GSM570900", "GSM570901", "GSM570902", "GSM570903", "GSM570904", "GSM570905" ], "type": "genotype/variation", "id": "GDS4142_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4142", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4142.tab", "compression": "gz" } ], [ [ "GDS4143.tab" ], { "title": "High fat diet effect on prostate: ventral prostate lobe", "description": "Analysis of ventral prostate lobe from 8-week-old C57BL/6J males fed a high fat diet for 12 weeks. High fat diets are a risk factor for prostate cancer. Results provide insight into molecular mechanisms by which high fat diet can promote carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "21374652", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE26464", "order": "none", "update_date": "Jun 11 2012", "subsets": [ { "dataset_id": "GDS4143", "description": "control diet", "sample_id": [ "GSM650476", "GSM650477", "GSM650478", "GSM650479", "GSM650480" ], "type": "growth protocol", "id": "GDS4143_1" }, { "dataset_id": "GDS4143", "description": "high fat diet", "sample_id": [ "GSM650481", "GSM650482", "GSM650483", "GSM650484", "GSM650485" ], "type": "growth protocol", "id": "GDS4143_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4143", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4143.tab", "compression": "gz" } ], [ [ "GDS4144.tab" ], { "title": "High fat diet effect on prostate: dorsolateral prostate lobe", "description": "Analysis of dorsolateral prostate lobe from 8-week-old C57BL/6J males fed a high fat diet for 12 weeks. High fat diets are a risk factor for prostate cancer. Results provide insight into molecular mechanisms by which high fat diet can promote carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "21374652", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE26464", "order": "none", "update_date": "Jun 11 2012", "subsets": [ { "dataset_id": "GDS4144", "description": "control diet", "sample_id": [ "GSM650486", "GSM650487", "GSM650488", "GSM650489", "GSM650490" ], "type": "growth protocol", "id": "GDS4144_1" }, { "dataset_id": "GDS4144", "description": "high fat diet", "sample_id": [ "GSM650491", "GSM650492", "GSM650493", "GSM650494" ], "type": "growth protocol", "id": "GDS4144_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4144", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4144.tab", "compression": "gz" } ], [ [ "GDS4145.tab" ], { "title": "Subcutaneous Interferon-beta-1b treatment in relapsing-remitting multiple sclerosis (U133 A): peripheral mononuclear blood cells", "description": "Temporal analysis of PBMCs collected from 25 German relapsing-remitting multiple sclerosis patients treated with recombinant interferon-beta-1b (rIFN-\u03b2-1b, 250 \u00b5g every other day) for 2 years. Results provide insight into molecular mechanisms of IFN-b action.", "type": "Expression profiling by array", "pubmed_id": [ "20136355", "22727118" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "125", "value_type": "count", "reference_series": "GSE24427", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4145", "description": "before first injection", "sample_id": [ "GSM601857", "GSM601862", "GSM601757", "GSM601787", "GSM601762", "GSM601802", "GSM601797", "GSM601782", "GSM601827", "GSM601852", "GSM601867", "GSM601842", "GSM601772", "GSM601792", "GSM601817", "GSM601832", "GSM601777", "GSM601752", "GSM601812", "GSM601807", "GSM601847", "GSM601822", "GSM601767", "GSM601837", "GSM601747" ], "type": "time", "id": "GDS4145_1" }, { "dataset_id": "GDS4145", "description": "before second injection", "sample_id": [ "GSM601858", "GSM601863", "GSM601758", "GSM601788", "GSM601763", "GSM601803", "GSM601798", "GSM601783", "GSM601828", "GSM601853", "GSM601868", "GSM601843", "GSM601773", "GSM601793", "GSM601818", "GSM601833", "GSM601778", "GSM601753", "GSM601813", "GSM601808", "GSM601848", "GSM601823", "GSM601768", "GSM601838", "GSM601748" ], "type": "time", "id": "GDS4145_2" }, { "dataset_id": "GDS4145", "description": "before month 1 injection", "sample_id": [ "GSM601859", "GSM601864", "GSM601759", "GSM601789", "GSM601764", "GSM601804", "GSM601799", "GSM601784", "GSM601829", "GSM601854", "GSM601869", "GSM601844", "GSM601774", "GSM601794", "GSM601819", "GSM601834", "GSM601779", "GSM601754", "GSM601814", "GSM601809", "GSM601849", "GSM601824", "GSM601769", "GSM601839", "GSM601749" ], "type": "time", "id": "GDS4145_3" }, { "dataset_id": "GDS4145", "description": "before month 12 injection", "sample_id": [ "GSM601860", "GSM601865", "GSM601760", "GSM601790", "GSM601765", "GSM601805", "GSM601800", "GSM601785", "GSM601830", "GSM601855", "GSM601870", "GSM601845", "GSM601775", "GSM601795", "GSM601820", "GSM601835", "GSM601780", "GSM601755", "GSM601815", "GSM601810", "GSM601850", "GSM601825", "GSM601770", "GSM601840", "GSM601750" ], "type": "time", "id": "GDS4145_4" }, { "dataset_id": "GDS4145", "description": "before month 24 injection", "sample_id": [ "GSM601861", "GSM601866", "GSM601761", "GSM601791", "GSM601766", "GSM601806", "GSM601801", "GSM601786", "GSM601831", "GSM601856", "GSM601871", "GSM601846", "GSM601776", "GSM601796", "GSM601821", "GSM601836", "GSM601781", "GSM601756", "GSM601816", "GSM601811", "GSM601851", "GSM601826", "GSM601771", "GSM601841", "GSM601751" ], "type": "time", "id": "GDS4145_5" }, { "dataset_id": "GDS4145", "description": "male", "sample_id": [ "GSM601857", "GSM601797", "GSM601782", "GSM601827", "GSM601867", "GSM601842", "GSM601792", "GSM601752", "GSM601837", "GSM601859", "GSM601799", "GSM601784", "GSM601829", "GSM601869", "GSM601844", "GSM601794", "GSM601754", "GSM601839", "GSM601860", "GSM601800", "GSM601785", "GSM601830", "GSM601870", "GSM601845", "GSM601795", "GSM601755", "GSM601840", "GSM601861", "GSM601801", "GSM601786", "GSM601831", "GSM601871", "GSM601846", "GSM601796", "GSM601756", "GSM601841", "GSM601858", "GSM601798", "GSM601783", "GSM601828", "GSM601868", "GSM601843", "GSM601793", "GSM601753", "GSM601838" ], "type": "gender", "id": "GDS4145_6" }, { "dataset_id": "GDS4145", "description": "female", "sample_id": [ "GSM601862", "GSM601757", "GSM601787", "GSM601762", "GSM601802", "GSM601852", "GSM601772", "GSM601817", "GSM601832", "GSM601777", "GSM601812", "GSM601807", "GSM601847", "GSM601822", "GSM601767", "GSM601747", "GSM601864", "GSM601759", "GSM601789", "GSM601764", "GSM601804", "GSM601854", "GSM601774", "GSM601819", "GSM601834", "GSM601779", "GSM601814", "GSM601809", "GSM601849", "GSM601824", "GSM601769", "GSM601749", "GSM601865", "GSM601760", "GSM601790", "GSM601765", "GSM601805", "GSM601855", "GSM601775", "GSM601820", "GSM601835", "GSM601780", "GSM601815", "GSM601810", "GSM601850", "GSM601825", "GSM601770", "GSM601750", "GSM601866", "GSM601761", "GSM601791", "GSM601766", "GSM601806", "GSM601856", "GSM601776", "GSM601821", "GSM601836", "GSM601781", "GSM601816", "GSM601811", "GSM601851", "GSM601826", "GSM601771", "GSM601751", "GSM601863", "GSM601758", "GSM601788", "GSM601763", "GSM601803", "GSM601853", "GSM601773", "GSM601818", "GSM601833", "GSM601778", "GSM601813", "GSM601808", "GSM601848", "GSM601823", "GSM601768", "GSM601748" ], "type": "gender", "id": "GDS4145_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4145", "version": 1.0, "instances": "125", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4145.tab", "compression": "gz" } ], [ [ "GDS4146.tab" ], { "title": "Subcutaneous Interferon-beta-1b treatment in relapsing-remitting multiple sclerosis (U133 B): peripheral mononuclear blood cells", "description": "Temporal analysis of PBMCs collected from 25 German relapsing-remitting multiple sclerosis patients treated with recombinant interferon-beta-1b (rIFN-\u03b2-1b, 250 \u00b5g every other day) for 2 years. Results provide insight into molecular mechanisms of IFN-b action.", "type": "Expression profiling by array", "pubmed_id": [ "20136355", "22727118" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "125", "value_type": "count", "reference_series": "GSE24427", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4146", "description": "before first injection", "sample_id": [ "GSM601872", "GSM601877", "GSM601882", "GSM601887", "GSM601892", "GSM601897", "GSM601902", "GSM601907", "GSM601912", "GSM601917", "GSM601922", "GSM601927", "GSM601932", "GSM601937", "GSM601942", "GSM601947", "GSM601952", "GSM601957", "GSM601962", "GSM601967", "GSM601972", "GSM601977", "GSM601982", "GSM601987", "GSM601992" ], "type": "time", "id": "GDS4146_1" }, { "dataset_id": "GDS4146", "description": "before second injection", "sample_id": [ "GSM601873", "GSM601878", "GSM601883", "GSM601888", "GSM601893", "GSM601898", "GSM601903", "GSM601908", "GSM601913", "GSM601918", "GSM601923", "GSM601928", "GSM601933", "GSM601938", "GSM601943", "GSM601948", "GSM601953", "GSM601958", "GSM601963", "GSM601968", "GSM601973", "GSM601978", "GSM601983", "GSM601988", "GSM601993" ], "type": "time", "id": "GDS4146_2" }, { "dataset_id": "GDS4146", "description": "before month 1 injection", "sample_id": [ "GSM601874", "GSM601879", "GSM601884", "GSM601889", "GSM601894", "GSM601899", "GSM601904", "GSM601909", "GSM601914", "GSM601919", "GSM601924", "GSM601929", "GSM601934", "GSM601939", "GSM601944", "GSM601949", "GSM601954", "GSM601959", "GSM601964", "GSM601969", "GSM601974", "GSM601979", "GSM601984", "GSM601989", "GSM601994" ], "type": "time", "id": "GDS4146_3" }, { "dataset_id": "GDS4146", "description": "before month 12 injection", "sample_id": [ "GSM601875", "GSM601880", "GSM601885", "GSM601890", "GSM601895", "GSM601900", "GSM601905", "GSM601910", "GSM601915", "GSM601920", "GSM601925", "GSM601930", "GSM601935", "GSM601940", "GSM601945", "GSM601950", "GSM601955", "GSM601960", "GSM601965", "GSM601970", "GSM601975", "GSM601980", "GSM601985", "GSM601990", "GSM601995" ], "type": "time", "id": "GDS4146_4" }, { "dataset_id": "GDS4146", "description": "before month 24 injection", "sample_id": [ "GSM601876", "GSM601881", "GSM601886", "GSM601891", "GSM601896", "GSM601901", "GSM601906", "GSM601911", "GSM601916", "GSM601921", "GSM601926", "GSM601931", "GSM601936", "GSM601941", "GSM601946", "GSM601951", "GSM601956", "GSM601961", "GSM601966", "GSM601971", "GSM601976", "GSM601981", "GSM601986", "GSM601991", "GSM601996" ], "type": "time", "id": "GDS4146_5" }, { "dataset_id": "GDS4146", "description": "female", "sample_id": [ "GSM601882", "GSM601887", "GSM601892", "GSM601897", "GSM601902", "GSM601912", "GSM601927", "GSM601932", "GSM601937", "GSM601942", "GSM601947", "GSM601957", "GSM601972", "GSM601977", "GSM601987", "GSM601874", "GSM601884", "GSM601889", "GSM601894", "GSM601899", "GSM601904", "GSM601914", "GSM601929", "GSM601934", "GSM601939", "GSM601944", "GSM601949", "GSM601959", "GSM601974", "GSM601979", "GSM601989", "GSM601875", "GSM601885", "GSM601890", "GSM601895", "GSM601900", "GSM601905", "GSM601915", "GSM601930", "GSM601935", "GSM601940", "GSM601945", "GSM601950", "GSM601960", "GSM601975", "GSM601980", "GSM601990", "GSM601876", "GSM601886", "GSM601891", "GSM601896", "GSM601901", "GSM601906", "GSM601916", "GSM601931", "GSM601936", "GSM601941", "GSM601946", "GSM601951", "GSM601961", "GSM601976", "GSM601981", "GSM601991", "GSM601873", "GSM601883", "GSM601888", "GSM601893", "GSM601898", "GSM601903", "GSM601913", "GSM601928", "GSM601933", "GSM601938", "GSM601943", "GSM601948", "GSM601958", "GSM601973", "GSM601978", "GSM601988", "GSM601872" ], "type": "gender", "id": "GDS4146_6" }, { "dataset_id": "GDS4146", "description": "male", "sample_id": [ "GSM601877", "GSM601907", "GSM601917", "GSM601922", "GSM601952", "GSM601962", "GSM601967", "GSM601982", "GSM601992", "GSM601879", "GSM601909", "GSM601919", "GSM601924", "GSM601954", "GSM601964", "GSM601969", "GSM601984", "GSM601994", "GSM601880", "GSM601910", "GSM601920", "GSM601925", "GSM601955", "GSM601965", "GSM601970", "GSM601985", "GSM601995", "GSM601881", "GSM601911", "GSM601921", "GSM601926", "GSM601956", "GSM601966", "GSM601971", "GSM601986", "GSM601996", "GSM601878", "GSM601908", "GSM601918", "GSM601923", "GSM601953", "GSM601963", "GSM601968", "GSM601983", "GSM601993" ], "type": "gender", "id": "GDS4146_7" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS4146", "version": 1.0, "instances": "125", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4146.tab", "compression": "gz" } ], [ [ "GDS4147.tab" ], { "title": "Relapsing-remitting multiple sclerosis therapy of Interferon-\u03b2 Betaferon or Rebif: peripheral mononuclear blood cells", "description": "Temporal analysis of PBMCs from relapsing-remitting multiple sclerosis (RRMS) patients treated with Interferon-\u03b2-1b (Betaferon) or IFN\u03b2-1a (Rebif). Half of the patients developed neutralizing antibodies (NAB) to IFN\u03b2. Results provide insight into molecular basis of IFN\u03b2 bioactivity in MS patient", "type": "Expression profiling by array", "pubmed_id": "21886806", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE26104", "order": "ordered", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS4147", "description": "baseline", "sample_id": [ "GSM641342", "GSM641346", "GSM641350", "GSM641354", "GSM641358", "GSM641362", "GSM641366", "GSM641370" ], "type": "time", "id": "GDS4147_1" }, { "dataset_id": "GDS4147", "description": "3 month", "sample_id": [ "GSM641343", "GSM641347", "GSM641351", "GSM641355", "GSM641359", "GSM641363", "GSM641367", "GSM641371" ], "type": "time", "id": "GDS4147_2" }, { "dataset_id": "GDS4147", "description": "12 month", "sample_id": [ "GSM641344", "GSM641348", "GSM641352", "GSM641356", "GSM641360", "GSM641364", "GSM641368", "GSM641372" ], "type": "time", "id": "GDS4147_3" }, { "dataset_id": "GDS4147", "description": "24 month", "sample_id": [ "GSM641345", "GSM641349", "GSM641353", "GSM641357", "GSM641361", "GSM641365", "GSM641369", "GSM641373" ], "type": "time", "id": "GDS4147_4" }, { "dataset_id": "GDS4147", "description": "no treatment", "sample_id": [ "GSM641342", "GSM641346", "GSM641350", "GSM641354", "GSM641358", "GSM641362", "GSM641366", "GSM641370" ], "type": "agent", "id": "GDS4147_5" }, { "dataset_id": "GDS4147", "description": "Betaferon", "sample_id": [ "GSM641343", "GSM641344", "GSM641345", "GSM641351", "GSM641352", "GSM641353", "GSM641355", "GSM641356", "GSM641357", "GSM641359", "GSM641360", "GSM641361" ], "type": "agent", "id": "GDS4147_6" }, { "dataset_id": "GDS4147", "description": "Rebif", "sample_id": [ "GSM641347", "GSM641348", "GSM641349", "GSM641363", "GSM641364", "GSM641365", "GSM641367", "GSM641368", "GSM641369", "GSM641371", "GSM641372", "GSM641373" ], "type": "agent", "id": "GDS4147_7" }, { "dataset_id": "GDS4147", "description": "NAB+", "sample_id": [ "GSM641342", "GSM641343", "GSM641344", "GSM641345", "GSM641346", "GSM641347", "GSM641348", "GSM641349", "GSM641350", "GSM641351", "GSM641352", "GSM641353", "GSM641354", "GSM641355", "GSM641356", "GSM641357" ], "type": "individual", "id": "GDS4147_8" }, { "dataset_id": "GDS4147", "description": "NAB-", "sample_id": [ "GSM641358", "GSM641359", "GSM641360", "GSM641361", "GSM641362", "GSM641363", "GSM641364", "GSM641365", "GSM641366", "GSM641367", "GSM641368", "GSM641369", "GSM641370", "GSM641371", "GSM641372", "GSM641373" ], "type": "individual", "id": "GDS4147_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4147", "version": 1.0, "instances": "32", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4147.tab", "compression": "gz" } ], [ [ "GDS4148.tab" ], { "title": "Ataxin-1 deficiency effect on lung", "description": "Analysis of lung of Atxn1-/- C57BL/6J mice at P6. Alveolarization defects causing air space enlargement were apparent in paralog of ATXN1 (ATAXIN1-Like) knockouts (Atxn1L-/-) at late alveolar stage (P17-23). Results provide insight into the molecular mechanisms mediating the alveolarization defect.", "type": "Expression profiling by array", "pubmed_id": "22014525", "platform": "GPL11078", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21212", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE29551", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4148", "description": "Atxn1 knock out", "sample_id": [ "GSM731599", "GSM731600", "GSM731601" ], "type": "genotype/variation", "id": "GDS4148_1" }, { "dataset_id": "GDS4148", "description": "wild type", "sample_id": [ "GSM731602", "GSM731603", "GSM731604" ], "type": "genotype/variation", "id": "GDS4148_2" } ], "taxid": "10090", "genes": 21210, "aggregation_function": "mean", "name": "GDS4148", "version": 1.0, "instances": "6", "variables": 21212, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4148.tab", "compression": "gz" } ], [ [ "GDS4149.tab" ], { "title": "Ataxin-1-Like deficiency effect on lung", "description": "Analysis of lung of ATAXIN1-Like-/- (Atxn1L-/-) C57BL/6J mice at P6. Alveolarization defects causing air space enlargement were apparent in ATXN1L knockouts at late alveolar stage (P17-23). Results provide insight into the molecular mechanisms mediating the alveolarization defect.", "type": "Expression profiling by array", "pubmed_id": "22014525", "platform": "GPL11078", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21212", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29551", "order": "none", "update_date": "Jun 13 2012", "subsets": [ { "dataset_id": "GDS4149", "description": "Atxn1L knock out", "sample_id": [ "GSM731591", "GSM731592", "GSM731593", "GSM731594" ], "type": "genotype/variation", "id": "GDS4149_1" }, { "dataset_id": "GDS4149", "description": "wild type", "sample_id": [ "GSM731595", "GSM731596", "GSM731597", "GSM731598" ], "type": "genotype/variation", "id": "GDS4149_2" } ], "taxid": "10090", "genes": 21210, "aggregation_function": "mean", "name": "GDS4149", "version": 1.0, "instances": "8", "variables": 21212, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4149.tab", "compression": "gz" } ], [ [ "GDS415.tab" ], { "title": "Photoperiodic gene expression", "description": "Comparison of short day and long day growth conditions in adult wild type Columbia-0 Arabidopsis apices. Plants grown under short day conditions for 30 days then shifted to long day for 0 or 7 days.", "type": "Expression profiling by array", "pubmed_id": "12893945", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE538", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS415", "description": "short day", "sample_id": [ "GSM8475", "GSM8476" ], "type": "growth protocol", "id": "GDS415_1" }, { "dataset_id": "GDS415", "description": "long day", "sample_id": [ "GSM8477", "GSM8478" ], "type": "growth protocol", "id": "GDS415_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS415", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS415.tab", "compression": "gz" } ], [ [ "GDS4150.tab" ], { "title": "Identical twins discordant for Multiple sclerosis: CD4+ and CD8+ T cells", "description": "Analysis of CD4+ and CD8+ T lymphocytes sorted from PBMCs from 4 monozygotic twin pairs discordant for relapsing remitting Multiple sclerosis (RRMS). The affected twin was free of disease-modifying therapies. Results provide insight into molecular mechanisms underlying the etiopathogenesis of RRMS.", "type": "Expression profiling by array", "pubmed_id": "21216829", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE16461", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS4150", "description": "Multiple sclerosis", "sample_id": [ "GSM413801", "GSM413799", "GSM413805", "GSM413802", "GSM413794", "GSM413793", "GSM413791", "GSM413797" ], "type": "disease state", "id": "GDS4150_1" }, { "dataset_id": "GDS4150", "description": "healthy", "sample_id": [ "GSM413800", "GSM413798", "GSM413804", "GSM413803", "GSM413792", "GSM413796", "GSM413795", "GSM413790" ], "type": "disease state", "id": "GDS4150_2" }, { "dataset_id": "GDS4150", "description": "CD8+ T cells", "sample_id": [ "GSM413801", "GSM413799", "GSM413805", "GSM413802", "GSM413800", "GSM413798", "GSM413804", "GSM413803" ], "type": "cell type", "id": "GDS4150_3" }, { "dataset_id": "GDS4150", "description": "CD4+ T cells", "sample_id": [ "GSM413794", "GSM413793", "GSM413791", "GSM413797", "GSM413792", "GSM413796", "GSM413795", "GSM413790" ], "type": "cell type", "id": "GDS4150_4" }, { "dataset_id": "GDS4150", "description": "twin P", "sample_id": [ "GSM413801", "GSM413793", "GSM413800", "GSM413792" ], "type": "individual", "id": "GDS4150_5" }, { "dataset_id": "GDS4150", "description": "twin R", "sample_id": [ "GSM413802", "GSM413794", "GSM413803", "GSM413795" ], "type": "individual", "id": "GDS4150_6" }, { "dataset_id": "GDS4150", "description": "twin T", "sample_id": [ "GSM413799", "GSM413791", "GSM413798", "GSM413790" ], "type": "individual", "id": "GDS4150_7" }, { "dataset_id": "GDS4150", "description": "twin U", "sample_id": [ "GSM413805", "GSM413797", "GSM413804", "GSM413796" ], "type": "individual", "id": "GDS4150_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4150", "version": 1.0, "instances": "16", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4150.tab", "compression": "gz" } ], [ [ "GDS4151.tab" ], { "title": "Non-phosphorylated FTY720 effect on immortalized microglia HMO6 cell line", "description": "Analysis of immortalized brain HMO6 microglia treated with FTY720-non-P, a non-phosphorylated form of FTY720 (a synthetic analog of sphingosine). Results provide insight into the molecular mechanisms responsible for triggering FTY720-non-P-induced apoptosis of HMO6.", "type": "Expression profiling by array", "pubmed_id": "21519925", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE28642", "order": "none", "update_date": "Jun 14 2012", "subsets": [ { "dataset_id": "GDS4151", "description": "DMSO", "sample_id": [ "GSM709682" ], "type": "agent", "id": "GDS4151_1" }, { "dataset_id": "GDS4151", "description": "FTY720-non-P + DMSO", "sample_id": [ "GSM709683" ], "type": "agent", "id": "GDS4151_2" }, { "dataset_id": "GDS4151", "description": "ETOH", "sample_id": [ "GSM709684" ], "type": "agent", "id": "GDS4151_3" }, { "dataset_id": "GDS4151", "description": "FTY720-non-P + ETOH", "sample_id": [ "GSM709685" ], "type": "agent", "id": "GDS4151_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4151", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4151.tab", "compression": "gz" } ], [ [ "GDS4152.tab" ], { "title": "Multiple sclerosis patients with high serum semaphorin4A levels: peripheral blood cells", "description": "Analysis of peripheral blood from MS patients with high or low serum levels of transmembrane-type semaphorin Sema4A. MS patients with high Sema4A levels have more severe disabilities and are unresponsive to IFN-\u03b2 treatment. Results provide insight into role of Sema4A in the pathogenesis of MS.", "type": "Expression profiling by array", "pubmed_id": "22491253", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE26484", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4152", "description": "Multiple sclerosis", "sample_id": [ "GSM651274", "GSM651275", "GSM651276", "GSM651277", "GSM651278", "GSM651279" ], "type": "disease state", "id": "GDS4152_1" }, { "dataset_id": "GDS4152", "description": "control", "sample_id": [ "GSM651280", "GSM651281", "GSM651282", "GSM651283" ], "type": "disease state", "id": "GDS4152_2" }, { "dataset_id": "GDS4152", "description": "high serum Sema4A", "sample_id": [ "GSM651274", "GSM651275", "GSM651276" ], "type": "genotype/variation", "id": "GDS4152_3" }, { "dataset_id": "GDS4152", "description": "low serum Sema4A", "sample_id": [ "GSM651277", "GSM651278", "GSM651279", "GSM651280", "GSM651281", "GSM651282", "GSM651283" ], "type": "genotype/variation", "id": "GDS4152_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4152", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4152.tab", "compression": "gz" } ], [ [ "GDS4153.tab" ], { "title": "Alpha-synuclein deficiency effect on striatum and cerebellum: time course", "description": "Analysis of striatum and cerebellum from alpha-synuclein (SNCA) knockouts at 6 or 21 months of age. SNCA mutations result in impaired movement and depression/anxiety, manifesting in humans as Parkinson's disease (PD). Results provide molecular insights into physiological role of alpha-synuclein.", "type": "Expression profiling by array", "pubmed_id": "20056137", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE19534", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4153", "description": "6 month", "sample_id": [ "GSM487046", "GSM487047", "GSM487048", "GSM487049", "GSM487050", "GSM487051", "GSM487052", "GSM487053", "GSM487054", "GSM487055", "GSM487056", "GSM487057" ], "type": "time", "id": "GDS4153_1" }, { "dataset_id": "GDS4153", "description": "21 month", "sample_id": [ "GSM487058", "GSM487059", "GSM487060", "GSM487061", "GSM487062", "GSM487063", "GSM487064", "GSM487065", "GSM487066", "GSM487067", "GSM487068", "GSM487069", "GSM487070", "GSM487071" ], "type": "time", "id": "GDS4153_2" }, { "dataset_id": "GDS4153", "description": "cerebellum", "sample_id": [ "GSM487062", "GSM487063", "GSM487064", "GSM487065", "GSM487049", "GSM487050", "GSM487051", "GSM487058", "GSM487059", "GSM487060", "GSM487061", "GSM487046", "GSM487047", "GSM487048" ], "type": "tissue", "id": "GDS4153_3" }, { "dataset_id": "GDS4153", "description": "striatum", "sample_id": [ "GSM487069", "GSM487070", "GSM487071", "GSM487055", "GSM487056", "GSM487057", "GSM487066", "GSM487067", "GSM487068", "GSM487052", "GSM487053", "GSM487054" ], "type": "tissue", "id": "GDS4153_4" }, { "dataset_id": "GDS4153", "description": "SNCA knock out", "sample_id": [ "GSM487062", "GSM487063", "GSM487064", "GSM487065", "GSM487049", "GSM487050", "GSM487051", "GSM487069", "GSM487070", "GSM487071", "GSM487055", "GSM487056", "GSM487057" ], "type": "genotype/variation", "id": "GDS4153_5" }, { "dataset_id": "GDS4153", "description": "wild type littermate", "sample_id": [ "GSM487058", "GSM487059", "GSM487060", "GSM487061", "GSM487046", "GSM487047", "GSM487048", "GSM487066", "GSM487067", "GSM487068", "GSM487052", "GSM487053", "GSM487054" ], "type": "genotype/variation", "id": "GDS4153_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4153", "version": 1.0, "instances": "26", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4153.tab", "compression": "gz" } ], [ [ "GDS4154.tab" ], { "title": "Parkinson's disease: post-mortem medullary regions", "description": "Analysis of 2 regions of PD medullas: dorsal motor nucleus of the vagus (DMNV) and inferior olivary nucleus (ION). A functional magnetic resonance imaging variant was used to identify brainstem regions targeted by (DMNV) and resistant to (ION) PD. Results provide insight into molecular basis of PD.", "type": "Expression profiling by array", "pubmed_id": "20837543", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE19587", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4154", "description": "DMNV", "sample_id": [ "GSM488119", "GSM488121", "GSM488123", "GSM488125", "GSM488127", "GSM488129", "GSM488111", "GSM488113", "GSM488115", "GSM488117", "GSM488131" ], "type": "tissue", "id": "GDS4154_1" }, { "dataset_id": "GDS4154", "description": "ION", "sample_id": [ "GSM488120", "GSM488122", "GSM488124", "GSM488126", "GSM488128", "GSM488130", "GSM488112", "GSM488114", "GSM488116", "GSM488118", "GSM488132" ], "type": "tissue", "id": "GDS4154_2" }, { "dataset_id": "GDS4154", "description": "PD case 1", "sample_id": [ "GSM488119", "GSM488120" ], "type": "individual", "id": "GDS4154_3" }, { "dataset_id": "GDS4154", "description": "PD case 2", "sample_id": [ "GSM488121", "GSM488122" ], "type": "individual", "id": "GDS4154_4" }, { "dataset_id": "GDS4154", "description": "PD case 3", "sample_id": [ "GSM488123", "GSM488124" ], "type": "individual", "id": "GDS4154_5" }, { "dataset_id": "GDS4154", "description": "PD case 4", "sample_id": [ "GSM488125", "GSM488126" ], "type": "individual", "id": "GDS4154_6" }, { "dataset_id": "GDS4154", "description": "PD case 5", "sample_id": [ "GSM488127", "GSM488128" ], "type": "individual", "id": "GDS4154_7" }, { "dataset_id": "GDS4154", "description": "PD case 6", "sample_id": [ "GSM488129", "GSM488130" ], "type": "individual", "id": "GDS4154_8" }, { "dataset_id": "GDS4154", "description": "Control case 1", "sample_id": [ "GSM488111", "GSM488112" ], "type": "individual", "id": "GDS4154_9" }, { "dataset_id": "GDS4154", "description": "Control case 2", "sample_id": [ "GSM488113", "GSM488114" ], "type": "individual", "id": "GDS4154_10" }, { "dataset_id": "GDS4154", "description": "Control case 3", "sample_id": [ "GSM488115", "GSM488116" ], "type": "individual", "id": "GDS4154_11" }, { "dataset_id": "GDS4154", "description": "Control case 4", "sample_id": [ "GSM488117", "GSM488118" ], "type": "individual", "id": "GDS4154_12" }, { "dataset_id": "GDS4154", "description": "Control case 5", "sample_id": [ "GSM488131", "GSM488132" ], "type": "individual", "id": "GDS4154_13" }, { "dataset_id": "GDS4154", "description": "healthy control", "sample_id": [ "GSM488132", "GSM488118", "GSM488116", "GSM488114", "GSM488112", "GSM488131", "GSM488117", "GSM488115", "GSM488113", "GSM488111" ], "type": "disease state", "id": "GDS4154_14" }, { "dataset_id": "GDS4154", "description": "Parkinson's disease", "sample_id": [ "GSM488130", "GSM488128", "GSM488126", "GSM488124", "GSM488122", "GSM488120", "GSM488129", "GSM488127", "GSM488125", "GSM488123", "GSM488121", "GSM488119" ], "type": "disease state", "id": "GDS4154_15" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4154", "version": 1.0, "instances": "22", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4154.tab", "compression": "gz" } ], [ [ "GDS4155.tab" ], { "title": "Dopaminergic transcription factors Ascl1, Lmx1a, Nurr1 combined effect on embryonic fibroblasts", "description": "Analysis of induced dopaminergic (iDA) neurons generated from E14.5 mouse embryonic fibroblasts (MEFs) reprogrammed by infection with lentiviruses expressing dopaminergic transcription factors Ascl1, Lmx1a and Nurr1. Results provide insight into the molecular basis of MEF to iDA reprogramming.", "type": "Expression profiling by array", "pubmed_id": "21725324", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE27174", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4155", "description": "dopaminergic-induced", "sample_id": [ "GSM671653", "GSM671654", "GSM671655", "GSM671656" ], "type": "genotype/variation", "id": "GDS4155_1" }, { "dataset_id": "GDS4155", "description": "control", "sample_id": [ "GSM671657", "GSM671658", "GSM671659", "GSM671660" ], "type": "genotype/variation", "id": "GDS4155_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4155", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4155.tab", "compression": "gz" } ], [ [ "GDS4156.tab" ], { "title": "Parkinson's disease induced pluripotent stem cell model with triplication of the \u03b1-synuclein locus", "description": "Analysis of iPSC lines derived from a PD patient with SNCA triplication and an unaffected first-degree relative. Triplication of SNCA, encoding \u03b1-synuclein, causes an aggressive form of PD. Results provide insight into the mechanistic basis of neurodegeneration caused by \u03b1-synuclein dysfunction.", "type": "Expression profiling by array", "pubmed_id": "21863007", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE30792", "order": "none", "update_date": "Jun 18 2012", "subsets": [ { "dataset_id": "GDS4156", "description": "iPSC", "sample_id": [ "GSM763976", "GSM763977", "GSM763978", "GSM763979" ], "type": "cell type", "id": "GDS4156_1" }, { "dataset_id": "GDS4156", "description": "hESC", "sample_id": [ "GSM763980" ], "type": "cell type", "id": "GDS4156_2" }, { "dataset_id": "GDS4156", "description": "relative-derived", "sample_id": [ "GSM763976", "GSM763977" ], "type": "cell line", "id": "GDS4156_3" }, { "dataset_id": "GDS4156", "description": "patient-derived", "sample_id": [ "GSM763978", "GSM763979" ], "type": "cell line", "id": "GDS4156_4" }, { "dataset_id": "GDS4156", "description": "SHEF4", "sample_id": [ "GSM763980" ], "type": "cell line", "id": "GDS4156_5" }, { "dataset_id": "GDS4156", "description": "normal alpha-synuclein (NAS)", "sample_id": [ "GSM763976", "GSM763977" ], "type": "genotype/variation", "id": "GDS4156_6" }, { "dataset_id": "GDS4156", "description": "triplication of SNCA (AST)", "sample_id": [ "GSM763978", "GSM763979" ], "type": "genotype/variation", "id": "GDS4156_7" }, { "dataset_id": "GDS4156", "description": "wild type", "sample_id": [ "GSM763980" ], "type": "genotype/variation", "id": "GDS4156_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4156", "version": 1.0, "instances": "5", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4156.tab", "compression": "gz" } ], [ [ "GDS4157.tab" ], { "title": "Dopaminergic neurotoxin MPTP-based Parkinson's disease risk model: brain regions", "description": "Analysis of caudate-putamen and pre-frontal cortex from transgenics, over-expressing either risk-associated synaptic acetylcholinesterase (AChE)-S variant or the protective soluble AChE-R variant, exposed to environmental risk factor MPTP. Results provide insights into the molecular basis of PD.", "type": "Expression profiling by array", "pubmed_id": "22198569", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE31458", "order": "none", "update_date": "Jun 18 2012", "subsets": [ { "dataset_id": "GDS4157", "description": "AChE-S over-expressor", "sample_id": [ "GSM781766", "GSM781765", "GSM781741", "GSM781740", "GSM781751", "GSM781750", "GSM781757", "GSM781756", "GSM781759", "GSM781758" ], "type": "genotype/variation", "id": "GDS4157_1" }, { "dataset_id": "GDS4157", "description": "AChE-R over-expressor", "sample_id": [ "GSM781768", "GSM781767", "GSM781745", "GSM781744", "GSM781749", "GSM781748", "GSM781761", "GSM781760", "GSM781762" ], "type": "genotype/variation", "id": "GDS4157_2" }, { "dataset_id": "GDS4157", "description": "wild type", "sample_id": [ "GSM781764", "GSM781763", "GSM781743", "GSM781742", "GSM781747", "GSM781746", "GSM781753", "GSM781752", "GSM781755", "GSM781754" ], "type": "genotype/variation", "id": "GDS4157_3" }, { "dataset_id": "GDS4157", "description": "control", "sample_id": [ "GSM781740", "GSM781741", "GSM781742", "GSM781743", "GSM781744", "GSM781745", "GSM781752", "GSM781753", "GSM781756", "GSM781757", "GSM781760", "GSM781761", "GSM781763", "GSM781764", "GSM781765", "GSM781766", "GSM781767", "GSM781768" ], "type": "agent", "id": "GDS4157_4" }, { "dataset_id": "GDS4157", "description": "MPTP", "sample_id": [ "GSM781746", "GSM781747", "GSM781748", "GSM781749", "GSM781750", "GSM781751", "GSM781754", "GSM781755", "GSM781758", "GSM781759", "GSM781762" ], "type": "agent", "id": "GDS4157_5" }, { "dataset_id": "GDS4157", "description": "Caudate-Putamen", "sample_id": [ "GSM781762", "GSM781758", "GSM781759", "GSM781754", "GSM781755", "GSM781760", "GSM781761", "GSM781756", "GSM781757", "GSM781752", "GSM781753" ], "type": "tissue", "id": "GDS4157_6" }, { "dataset_id": "GDS4157", "description": "Pre-Frontal Cortex", "sample_id": [ "GSM781748", "GSM781749", "GSM781750", "GSM781751", "GSM781746", "GSM781747", "GSM781744", "GSM781745", "GSM781740", "GSM781741", "GSM781742", "GSM781743", "GSM781767", "GSM781768", "GSM781765", "GSM781766", "GSM781763", "GSM781764" ], "type": "tissue", "id": "GDS4157_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4157", "version": 1.0, "instances": "29", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4157.tab", "compression": "gz" } ], [ [ "GDS4158.tab" ], { "title": "LNCap prostate cancer cell line response to loss of COnstitutive Photomorphogenic-1 and ETV1", "description": "Analysis of LNCap prostate cancer (PC) cells following siRNA-mediated knockdown of COP1 and ETV1. Ubiquitin ligase COP1 (RFWD2) negatively regulates proto-oncogene ETV1 which has been linked to PC. Results provide insight into the role of COP1 as a tumor suppressor in PC.", "type": "Expression profiling by array", "pubmed_id": "21572435", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE27914", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4158", "description": "control", "sample_id": [ "GSM689415", "GSM689426", "GSM689433", "GSM689434" ], "type": "genotype/variation", "id": "GDS4158_1" }, { "dataset_id": "GDS4158", "description": "COP1 knockdown", "sample_id": [ "GSM689416", "GSM689419", "GSM689420", "GSM689423", "GSM689429", "GSM689436" ], "type": "genotype/variation", "id": "GDS4158_2" }, { "dataset_id": "GDS4158", "description": "COP1.ETV1 knockdown", "sample_id": [ "GSM689410", "GSM689411", "GSM689421", "GSM689424", "GSM689430", "GSM689437" ], "type": "genotype/variation", "id": "GDS4158_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4158", "version": 1.0, "instances": "16", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4158.tab", "compression": "gz" } ], [ [ "GDS4159.tab" ], { "title": "LNCap prostate cancer cell line response to loss of COnstitutive Photomorphogenic-1, ETV1 and c-JUN", "description": "Analysis of LNCap prostate cancer cells following siRNA-mediated knockdown of COP1, ETV1, and c-JUN. Ubiquitin ligase COP1 (RFWD2) negatively regulates the abundance of ETV1 and c-JUN, both of which have been linked to PC. Results provide insight into the role of COP1 as a tumor suppressor in PC.", "type": "Expression profiling by array", "pubmed_id": "21572435", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE27914", "order": "none", "update_date": "Jun 15 2012", "subsets": [ { "dataset_id": "GDS4159", "description": "control", "sample_id": [ "GSM689418", "GSM689428", "GSM689432", "GSM689435" ], "type": "genotype/variation", "id": "GDS4159_1" }, { "dataset_id": "GDS4159", "description": "COP1.JUN knockdown", "sample_id": [ "GSM689414", "GSM689422", "GSM689425", "GSM689427", "GSM689439", "GSM689440" ], "type": "genotype/variation", "id": "GDS4159_2" }, { "dataset_id": "GDS4159", "description": "COP1.JUN.ETV1 knockdown", "sample_id": [ "GSM689412", "GSM689413", "GSM689417", "GSM689431", "GSM689438" ], "type": "genotype/variation", "id": "GDS4159_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4159", "version": 1.0, "instances": "15", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4159.tab", "compression": "gz" } ], [ [ "GDS416.tab" ], { "title": "Leaf, stem and flower gene expression", "description": "Analysis of Columbia-0 leaf, stem and flowers grown in greenhouse or growth chamber. Expanding leaves harvested 15 days post germination. Expanding upper 2\" of stem and developed flowers/unopened buds harvested 29 days post germination.", "type": "Expression profiling by array", "pubmed_id": "15178800", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE607", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS416", "description": "leaf", "sample_id": [ "GSM9223", "GSM9224", "GSM9225" ], "type": "tissue", "id": "GDS416_1" }, { "dataset_id": "GDS416", "description": "stem", "sample_id": [ "GSM9226", "GSM9227", "GSM9228", "GSM9229" ], "type": "tissue", "id": "GDS416_2" }, { "dataset_id": "GDS416", "description": "flower", "sample_id": [ "GSM9230", "GSM9231", "GSM9232", "GSM9233" ], "type": "tissue", "id": "GDS416_3" }, { "dataset_id": "GDS416", "description": "growth chamber", "sample_id": [ "GSM9223", "GSM9226", "GSM9227", "GSM9230", "GSM9231" ], "type": "growth protocol", "id": "GDS416_4" }, { "dataset_id": "GDS416", "description": "greenhouse", "sample_id": [ "GSM9224", "GSM9225", "GSM9228", "GSM9229", "GSM9232", "GSM9233" ], "type": "growth protocol", "id": "GDS416_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS416", "version": 1.0, "instances": "11", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS416.tab", "compression": "gz" } ], [ [ "GDS4160.tab" ], { "title": "Hepatitis C Virus infection effect on Huh7 hepatoma cells: time course", "description": "Analysis of Huh7 hepatoma cells infected with JFH-1 Hepatitis C Virus (HCV) at 6, 12, 18, 24, and 48 hours post-infection. HCV is a leading cause of chronic liver disease. Results provide insight into molecular mechanisms that contribute to HCV-associated liver pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20200238", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE20948", "order": "none", "update_date": "Jul 24 2012", "subsets": [ { "dataset_id": "GDS4160", "description": "6 hours", "sample_id": [ "GSM523800", "GSM523801", "GSM523814", "GSM523815" ], "type": "time", "id": "GDS4160_1" }, { "dataset_id": "GDS4160", "description": "12 hours", "sample_id": [ "GSM523802", "GSM523803", "GSM523804", "GSM523816", "GSM523817", "GSM523818" ], "type": "time", "id": "GDS4160_2" }, { "dataset_id": "GDS4160", "description": "18 hours", "sample_id": [ "GSM523819", "GSM523820", "GSM523821", "GSM523805", "GSM523806", "GSM523807" ], "type": "time", "id": "GDS4160_3" }, { "dataset_id": "GDS4160", "description": "24 hours", "sample_id": [ "GSM523808", "GSM523809", "GSM523810", "GSM523822", "GSM523823", "GSM523824" ], "type": "time", "id": "GDS4160_4" }, { "dataset_id": "GDS4160", "description": "48 hours", "sample_id": [ "GSM523825", "GSM523826", "GSM523827", "GSM523811", "GSM523812", "GSM523813" ], "type": "time", "id": "GDS4160_5" }, { "dataset_id": "GDS4160", "description": "control", "sample_id": [ "GSM523815", "GSM523814", "GSM523827", "GSM523826", "GSM523825", "GSM523824", "GSM523823", "GSM523822", "GSM523821", "GSM523820", "GSM523819", "GSM523818", "GSM523817", "GSM523816" ], "type": "infection", "id": "GDS4160_6" }, { "dataset_id": "GDS4160", "description": "JFH-1 Hepatitis C Virus", "sample_id": [ "GSM523801", "GSM523800", "GSM523813", "GSM523812", "GSM523811", "GSM523810", "GSM523809", "GSM523808", "GSM523807", "GSM523806", "GSM523805", "GSM523804", "GSM523803", "GSM523802" ], "type": "infection", "id": "GDS4160_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4160", "version": 1.0, "instances": "28", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4160.tab", "compression": "gz" } ], [ [ "GDS4162.tab" ], { "title": "Conditional GBA1 deletion model of Type 1 Gaucher Disease: liver and spleen", "description": "Analysis of liver and spleen from mice with increasing severities of the type 1 Gaucher Disease (GD1) phenotype resulting from conditional glucocerebrosidase gene (GBA1) deletion in the hematopoietic and mesenchymal cell lineages. Results provide insight into the molecular basis of GD1 development.", "type": "Expression profiling by array", "pubmed_id": "20962279", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE23086", "order": "none", "update_date": "Aug 21 2012", "subsets": [ { "dataset_id": "GDS4162", "description": "liver", "sample_id": [ "GSM569174", "GSM569175", "GSM569176" ], "type": "tissue", "id": "GDS4162_1" }, { "dataset_id": "GDS4162", "description": "spleen", "sample_id": [ "GSM569177", "GSM569178", "GSM569179", "GSM569180" ], "type": "tissue", "id": "GDS4162_2" }, { "dataset_id": "GDS4162", "description": "control", "sample_id": [ "GSM569174", "GSM569177" ], "type": "disease state", "id": "GDS4162_3" }, { "dataset_id": "GDS4162", "description": "mild hepatomegaly", "sample_id": [ "GSM569175" ], "type": "disease state", "id": "GDS4162_4" }, { "dataset_id": "GDS4162", "description": "severe hepatomegaly", "sample_id": [ "GSM569176" ], "type": "disease state", "id": "GDS4162_5" }, { "dataset_id": "GDS4162", "description": "splenomegaly (not enlarged)", "sample_id": [ "GSM569178" ], "type": "disease state", "id": "GDS4162_6" }, { "dataset_id": "GDS4162", "description": "moderate splenomegaly", "sample_id": [ "GSM569179" ], "type": "disease state", "id": "GDS4162_7" }, { "dataset_id": "GDS4162", "description": "severe splenomegaly", "sample_id": [ "GSM569180" ], "type": "disease state", "id": "GDS4162_8" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4162", "version": 1.0, "instances": "7", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4162.tab", "compression": "gz" } ], [ [ "GDS4163.tab" ], { "title": "Recombinant Interferon \u03b1 effect on natural killer cells in vitro", "description": "Analysis of natural killer (NK) cells sorted from healthy donor peripheral blood mononuclear cells (PBMCs) stimulated for 6h in media containing 1 or 100 ng/ml recombinant interferon (IFN)-alpha-2b. Results provide insight into the effects of type I IFNs on NK cells.", "type": "Expression profiling by array", "pubmed_id": "20334827", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE15743", "order": "none", "update_date": "Aug 21 2012", "subsets": [ { "dataset_id": "GDS4163", "description": "cultured for 0 hours", "sample_id": [ "GSM394092" ], "type": "growth protocol", "id": "GDS4163_1" }, { "dataset_id": "GDS4163", "description": "cultured for 6 hours", "sample_id": [ "GSM394093", "GSM394094", "GSM394095" ], "type": "growth protocol", "id": "GDS4163_2" }, { "dataset_id": "GDS4163", "description": "none", "sample_id": [ "GSM394092", "GSM394093" ], "type": "agent", "id": "GDS4163_3" }, { "dataset_id": "GDS4163", "description": "recombinant IFNa-2b", "sample_id": [ "GSM394094", "GSM394095" ], "type": "agent", "id": "GDS4163_4" }, { "dataset_id": "GDS4163", "description": "NA", "sample_id": [ "GSM394092", "GSM394093" ], "type": "dose", "id": "GDS4163_5" }, { "dataset_id": "GDS4163", "description": "1 ng/ml", "sample_id": [ "GSM394094" ], "type": "dose", "id": "GDS4163_6" }, { "dataset_id": "GDS4163", "description": "100 ng/ml", "sample_id": [ "GSM394095" ], "type": "dose", "id": "GDS4163_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4163", "version": 1.0, "instances": "4", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4163.tab", "compression": "gz" } ], [ [ "GDS4165.tab" ], { "title": "GB virus C effect on hepatitis C virus (HCV)/human immunodeficiency virus (HIV) co-infected patients: liver", "description": "Analysis of liver biopsies from HCV/HIV co-infected patients who are positive for GB virus C (GBV-C) infection. GBV-C infection reduces HCV-related liver disease in HCV/HIV co-infection. Results provide insight into underlying molecular mechanisms that may be involved in the reduced liver disease.", "type": "Expression profiling by array", "pubmed_id": "21266183", "platform": "GPL8715", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18089", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE16593", "order": "none", "update_date": "Aug 21 2012", "subsets": [ { "dataset_id": "GDS4165", "description": "GB virus C negative", "sample_id": [ "GSM416995", "GSM417004", "GSM416997", "GSM416998", "GSM416999", "GSM417002" ], "type": "infection", "id": "GDS4165_1" }, { "dataset_id": "GDS4165", "description": "GB virus C positive", "sample_id": [ "GSM416996", "GSM417000", "GSM417001", "GSM417003" ], "type": "infection", "id": "GDS4165_2" } ], "taxid": "9606", "genes": 17641, "aggregation_function": "mean", "name": "GDS4165", "version": 1.0, "instances": "10", "variables": 17643, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4165.tab", "compression": "gz" } ], [ [ "GDS4166.tab" ], { "title": "Kupffer cell depletion effect on steatosis in the context of high-fat-diet-induced obesity", "description": "Analysis of liver from C57BL/6 males fed high fat diets (HFD) for 20 wks to induce obesity and hepatic steatosis, and injected with clodronate during the last week of HFD to deplete Kupffer cells (KCs) in liver. Results provide insight into role of KCs in regulation of hepatic triglyceride storage.", "type": "Expression profiling by array", "pubmed_id": "20054868", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE33044", "order": "none", "update_date": "Aug 22 2012", "subsets": [ { "dataset_id": "GDS4166", "description": "low fat diet", "sample_id": [ "GSM818773", "GSM818774" ], "type": "growth protocol", "id": "GDS4166_1" }, { "dataset_id": "GDS4166", "description": "high fat diet", "sample_id": [ "GSM818775", "GSM818776" ], "type": "growth protocol", "id": "GDS4166_2" }, { "dataset_id": "GDS4166", "description": "healthy", "sample_id": [ "GSM818773", "GSM818774" ], "type": "disease state", "id": "GDS4166_3" }, { "dataset_id": "GDS4166", "description": "obesity and hepatic steatosis", "sample_id": [ "GSM818775", "GSM818776" ], "type": "disease state", "id": "GDS4166_4" }, { "dataset_id": "GDS4166", "description": "control", "sample_id": [ "GSM818773", "GSM818775" ], "type": "protocol", "id": "GDS4166_5" }, { "dataset_id": "GDS4166", "description": "Kupffer cell depletion", "sample_id": [ "GSM818774", "GSM818776" ], "type": "protocol", "id": "GDS4166_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4166", "version": 1.0, "instances": "4", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4166.tab", "compression": "gz" } ], [ [ "GDS4167.tab" ], { "title": "Chronic lymphocytic leukemia: peripheral blood B cells (HG-U133A)", "description": "Analysis of peripheral blood B cells isolated from 41 untreated chronic lymphocytic leukemia (CLL) patients and 11 age-matched control subjects. B-cell CLL is the most common type of leukemia, mainly affecting adults. Results provide insight into molecular mechanisms underlying CLL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20595513", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "transformed count", "reference_series": "GSE22529", "order": "none", "update_date": "Aug 22 2012", "subsets": [ { "dataset_id": "GDS4167", "description": "normal control", "sample_id": [ "GSM559383", "GSM559387", "GSM559391", "GSM559395", "GSM559397", "GSM559401", "GSM559414", "GSM559422", "GSM559424", "GSM559431", "GSM559432" ], "type": "disease state", "id": "GDS4167_1" }, { "dataset_id": "GDS4167", "description": "Chronic lymphocytic leukemia", "sample_id": [ "GSM559381", "GSM559382", "GSM559384", "GSM559385", "GSM559386", "GSM559388", "GSM559389", "GSM559390", "GSM559392", "GSM559393", "GSM559394", "GSM559396", "GSM559398", "GSM559399", "GSM559400", "GSM559402", "GSM559403", "GSM559404", "GSM559405", "GSM559406", "GSM559407", "GSM559408", "GSM559409", "GSM559410", "GSM559411", "GSM559412", "GSM559413", "GSM559415", "GSM559416", "GSM559417", "GSM559418", "GSM559419", "GSM559420", "GSM559421", "GSM559423", "GSM559425", "GSM559426", "GSM559427", "GSM559428", "GSM559429", "GSM559430" ], "type": "disease state", "id": "GDS4167_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4167", "version": 1.0, "instances": "52", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4167.tab", "compression": "gz" } ], [ [ "GDS4168.tab" ], { "title": "Chronic lymphocytic leukemia: peripheral blood B cells (HG-U133B)", "description": "Analysis of peripheral blood B cells isolated from 41 untreated chronic lymphocytic leukemia (CLL) patients and 11 age-matched control subjects. B-cell CLL is the most common type of leukemia, mainly affecting adults. Results provide insight into molecular mechanisms underlying CLL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20595513", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "transformed count", "reference_series": "GSE22529", "order": "none", "update_date": "Aug 22 2012", "subsets": [ { "dataset_id": "GDS4168", "description": "Chronic lymphocytic leukemia", "sample_id": [ "GSM559433", "GSM559434", "GSM559436", "GSM559437", "GSM559438", "GSM559440", "GSM559441", "GSM559442", "GSM559444", "GSM559445", "GSM559446", "GSM559448", "GSM559450", "GSM559451", "GSM559452", "GSM559454", "GSM559455", "GSM559456", "GSM559457", "GSM559458", "GSM559459", "GSM559460", "GSM559461", "GSM559462", "GSM559463", "GSM559464", "GSM559465", "GSM559467", "GSM559468", "GSM559469", "GSM559470", "GSM559471", "GSM559472", "GSM559473", "GSM559475", "GSM559477", "GSM559478", "GSM559479", "GSM559480", "GSM559481", "GSM559482" ], "type": "disease state", "id": "GDS4168_1" }, { "dataset_id": "GDS4168", "description": "normal control", "sample_id": [ "GSM559435", "GSM559439", "GSM559443", "GSM559447", "GSM559449", "GSM559453", "GSM559466", "GSM559474", "GSM559476", "GSM559483", "GSM559484" ], "type": "disease state", "id": "GDS4168_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS4168", "version": 1.0, "instances": "52", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4168.tab", "compression": "gz" } ], [ [ "GDS4169.tab" ], { "title": "Mixed lineage leukemia fusion protein induction of acute leukemia: bone marrow cells", "description": "Analysis of bone marrow of C57BL6 mice injected with AAF4.MLL-transduced or AF4.MLL/MLL.AF4-transduced leukemic cells. MLL fusion proteins initiate malignant transformation leading to the development of acute leukemia. Results provide insight into the leukemogenic properties of MLL fusion proteins.", "type": "Expression profiling by array", "pubmed_id": "20194896", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE20519", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4169", "description": "control", "sample_id": [ "GSM515405" ], "type": "disease state", "id": "GDS4169_1" }, { "dataset_id": "GDS4169", "description": "leukemia", "sample_id": [ "GSM515402", "GSM515403", "GSM515404" ], "type": "disease state", "id": "GDS4169_2" }, { "dataset_id": "GDS4169", "description": "wild type", "sample_id": [ "GSM515405" ], "type": "genotype/variation", "id": "GDS4169_3" }, { "dataset_id": "GDS4169", "description": "AF4.MLL transduced", "sample_id": [ "GSM515403", "GSM515404" ], "type": "genotype/variation", "id": "GDS4169_4" }, { "dataset_id": "GDS4169", "description": "AF4.MLL + MLL.AF4 transduced", "sample_id": [ "GSM515402" ], "type": "genotype/variation", "id": "GDS4169_5" }, { "dataset_id": "GDS4169", "description": "pro-B ALL immunophenotype", "sample_id": [ "GSM515403" ], "type": "other", "id": "GDS4169_6" }, { "dataset_id": "GDS4169", "description": "B/T BAL immunophenotype", "sample_id": [ "GSM515404" ], "type": "other", "id": "GDS4169_7" }, { "dataset_id": "GDS4169", "description": "MLL immunophenotype", "sample_id": [ "GSM515402" ], "type": "other", "id": "GDS4169_8" }, { "dataset_id": "GDS4169", "description": "normal", "sample_id": [ "GSM515405" ], "type": "other", "id": "GDS4169_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4169", "version": 1.0, "instances": "4", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4169.tab", "compression": "gz" } ], [ [ "GDS417.tab" ], { "title": "Disease resistance in callose synthase mutant", "description": "Examination of disease resistance mechanisms in powdery mildew resistant 4 (pmr4), a mutant lacking pathogen-induced callose. Infected and uninfected pmr4-1 and wildtype plants examined. Activation of salicylic acid signal transduction pathway implied.", "type": "Expression profiling by array", "pubmed_id": "12920300", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE431", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS417", "description": "callose synthase deficient mutant", "sample_id": [ "GSM6577", "GSM6578", "GSM6579", "GSM6580", "GSM6581", "GSM6582", "GSM6583", "GSM6584" ], "type": "strain", "id": "GDS417_1" }, { "dataset_id": "GDS417", "description": "wild type", "sample_id": [ "GSM6227", "GSM6544", "GSM6571", "GSM6572", "GSM6573", "GSM6574", "GSM6575", "GSM6576" ], "type": "strain", "id": "GDS417_2" }, { "dataset_id": "GDS417", "description": "pathogen", "sample_id": [ "GSM6573", "GSM6574", "GSM6575", "GSM6576", "GSM6577", "GSM6578", "GSM6579", "GSM6580" ], "type": "infection", "id": "GDS417_3" }, { "dataset_id": "GDS417", "description": "control", "sample_id": [ "GSM6227", "GSM6544", "GSM6571", "GSM6572", "GSM6581", "GSM6582", "GSM6583", "GSM6584" ], "type": "infection", "id": "GDS417_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS417", "version": 1.0, "instances": "16", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS417.tab", "compression": "gz" } ], [ [ "GDS4170.tab" ], { "title": "Pluripotent embryonic stem cells and multipotent adult germline stem cells in 129SV and Stra8-EGFP/Rosa26-LacZ strains", "description": "Analysis of multipotent adult germline stem cells (maGSCs) and embryonic stem cells (ESCs) from different genetic backgrounds and under differentiation-promoting conditions. Results enable expression pattern comparisons between maGSCs and ESCs.", "type": "Expression profiling by array", "pubmed_id": "20624824", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE22605", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4170", "description": "embryonic stem cells", "sample_id": [ "GSM560810", "GSM560811", "GSM560812", "GSM560813", "GSM560814", "GSM560815", "GSM560816", "GSM560817", "GSM560818" ], "type": "cell type", "id": "GDS4170_1" }, { "dataset_id": "GDS4170", "description": "adult stem cells", "sample_id": [ "GSM560819", "GSM560820", "GSM560821", "GSM560822", "GSM560823", "GSM560824", "GSM560825", "GSM560826", "GSM560827" ], "type": "cell type", "id": "GDS4170_2" }, { "dataset_id": "GDS4170", "description": "129SV", "sample_id": [ "GSM560819", "GSM560820", "GSM560821", "GSM560810", "GSM560811", "GSM560812", "GSM560822", "GSM560823", "GSM560824", "GSM560816", "GSM560817", "GSM560818" ], "type": "strain", "id": "GDS4170_3" }, { "dataset_id": "GDS4170", "description": "Stra8", "sample_id": [ "GSM560825", "GSM560826", "GSM560827", "GSM560813", "GSM560814", "GSM560815" ], "type": "strain", "id": "GDS4170_4" }, { "dataset_id": "GDS4170", "description": "differentiated", "sample_id": [ "GSM560819", "GSM560820", "GSM560821", "GSM560810", "GSM560811", "GSM560812" ], "type": "growth protocol", "id": "GDS4170_5" }, { "dataset_id": "GDS4170", "description": "undifferentiated", "sample_id": [ "GSM560822", "GSM560823", "GSM560824", "GSM560825", "GSM560826", "GSM560827", "GSM560816", "GSM560817", "GSM560818", "GSM560813", "GSM560814", "GSM560815" ], "type": "growth protocol", "id": "GDS4170_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4170", "version": 1.0, "instances": "18", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4170.tab", "compression": "gz" } ], [ [ "GDS4171.tab" ], { "title": "Neonatal ovarian xenobiotic cultures", "description": "Analysis of ovaries from Swiss neonates cultured in media containing xenobiotics: 4-vinylcyclohexene diepoxide, methoxychlor, menadione. Non-renewing follicles are vulnerable to xenobiotic insult. Results provide insight into molecular mechanisms underlying xenobiotic-induced preantral ovotoxicity.", "type": "Expression profiling by array", "pubmed_id": "20829426", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE23725", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4171", "description": "DMSO control", "sample_id": [ "GSM585549", "GSM585550", "GSM585551" ], "type": "agent", "id": "GDS4171_1" }, { "dataset_id": "GDS4171", "description": "4-Vinylcyclohexene Diepoxide", "sample_id": [ "GSM585552", "GSM585553", "GSM585554" ], "type": "agent", "id": "GDS4171_2" }, { "dataset_id": "GDS4171", "description": "Methoxychlor", "sample_id": [ "GSM585555", "GSM585556", "GSM585557" ], "type": "agent", "id": "GDS4171_3" }, { "dataset_id": "GDS4171", "description": "Menadione", "sample_id": [ "GSM585558", "GSM585559", "GSM585560" ], "type": "agent", "id": "GDS4171_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4171", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4171.tab", "compression": "gz" } ], [ [ "GDS4172.tab" ], { "title": "Effect of protease-resistant (PML-RAR)\u03b1 on U937 cell line", "description": "Analysis of U937 cells transfected with GFP-(PML-RAR)\u03b1 (PR) or GFP-PR2VR (cleavage-resistant mutant) and GFP-sorted at 6 and 9 hrs. Neutrophil elastase (NE) cleaves PR, the fusion protein that initiates acute promyelocytic leukemia. Results provide insight into leukemogenicity of NE-resistant PR.", "type": "Expression profiling by array", "pubmed_id": "20647568", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE21550", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4172", "description": "control", "sample_id": [ "GSM538616", "GSM538607", "GSM538613", "GSM538610" ], "type": "genotype/variation", "id": "GDS4172_1" }, { "dataset_id": "GDS4172", "description": "(PML-RAR)\u03b1", "sample_id": [ "GSM538617", "GSM538608", "GSM538614", "GSM538611" ], "type": "genotype/variation", "id": "GDS4172_2" }, { "dataset_id": "GDS4172", "description": "PR2VR (cleavage resistant mutant)", "sample_id": [ "GSM538618", "GSM538609", "GSM538615", "GSM538612" ], "type": "genotype/variation", "id": "GDS4172_3" }, { "dataset_id": "GDS4172", "description": "6 hours", "sample_id": [ "GSM538612", "GSM538615", "GSM538611", "GSM538614", "GSM538610", "GSM538613" ], "type": "time", "id": "GDS4172_4" }, { "dataset_id": "GDS4172", "description": "9 hours", "sample_id": [ "GSM538609", "GSM538618", "GSM538608", "GSM538617", "GSM538607", "GSM538616" ], "type": "time", "id": "GDS4172_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4172", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4172.tab", "compression": "gz" } ], [ [ "GDS4173.tab" ], { "title": "DNA methyltransferase triple knockout nuclear transfer-trophoblastic stem cells", "description": "Analysis of Dnmt1/3a/3b-TKO ntTS cells, wildtype ntTS cells, and cell types representing the three blastocyst-derived lineages: epiblast (ES cells), trophectoderm (TS cells), and primitive endoderm (XEN cells, PE cells). Results provide insight into role of DNA methylation in early embryogenesis.", "type": "Expression profiling by array", "pubmed_id": "20637626", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE20177", "order": "none", "update_date": "Jun 11 2014", "subsets": [ { "dataset_id": "GDS4173", "description": "19-1", "sample_id": [ "GSM506221", "GSM506222" ], "type": "cell line", "id": "GDS4173_1" }, { "dataset_id": "GDS4173", "description": "J1", "sample_id": [ "GSM506223", "GSM506224" ], "type": "cell line", "id": "GDS4173_2" }, { "dataset_id": "GDS4173", "description": "J1G4.2", "sample_id": [ "GSM506225", "GSM506226" ], "type": "cell line", "id": "GDS4173_3" }, { "dataset_id": "GDS4173", "description": "9.2", "sample_id": [ "GSM506227", "GSM506228" ], "type": "cell line", "id": "GDS4173_4" }, { "dataset_id": "GDS4173", "description": "1", "sample_id": [ "GSM506229", "GSM506230", "GSM506233" ], "type": "cell line", "id": "GDS4173_5" }, { "dataset_id": "GDS4173", "description": "2", "sample_id": [ "GSM506231", "GSM506234" ], "type": "cell line", "id": "GDS4173_6" }, { "dataset_id": "GDS4173", "description": "5", "sample_id": [ "GSM506232" ], "type": "cell line", "id": "GDS4173_7" }, { "dataset_id": "GDS4173", "description": "Dnmt1/3a/3b-TKO", "sample_id": [ "GSM506221", "GSM506222", "GSM506229", "GSM506230" ], "type": "genotype/variation", "id": "GDS4173_8" }, { "dataset_id": "GDS4173", "description": "wild type", "sample_id": [ "GSM506223", "GSM506224", "GSM506225", "GSM506226", "GSM506227", "GSM506228", "GSM506231", "GSM506232", "GSM506233", "GSM506234" ], "type": "genotype/variation", "id": "GDS4173_9" }, { "dataset_id": "GDS4173", "description": "ES", "sample_id": [ "GSM506221", "GSM506222", "GSM506223", "GSM506224" ], "type": "cell type", "id": "GDS4173_10" }, { "dataset_id": "GDS4173", "description": "PE", "sample_id": [ "GSM506225", "GSM506226" ], "type": "cell type", "id": "GDS4173_11" }, { "dataset_id": "GDS4173", "description": "ntTS", "sample_id": [ "GSM506227", "GSM506228", "GSM506229", "GSM506230" ], "type": "cell type", "id": "GDS4173_12" }, { "dataset_id": "GDS4173", "description": "TS", "sample_id": [ "GSM506231", "GSM506232" ], "type": "cell type", "id": "GDS4173_13" }, { "dataset_id": "GDS4173", "description": "XEN", "sample_id": [ "GSM506233", "GSM506234" ], "type": "cell type", "id": "GDS4173_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4173", "version": 1.0, "instances": "14", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4173.tab", "compression": "gz" } ], [ [ "GDS4174.tab" ], { "title": "Notch1 promoter deletion effect on Ikaros-deficient model of T-cell acute lymphoblastic leukemia: thymic lymphoma", "description": "Analysis of thymic tumors from Ikaros-deficient (IkL/L) mice with a Notch promoter/exon1 deletion. The deletion of Notch1 promoter results in oncogenic activation of Notch1 and significantly accelerates leukemogenesis. Results provide insight into role of Notch activation in pathogenesis of T-ALL.", "type": "Expression profiling by array", "pubmed_id": "20829372", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE23972", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4174", "description": "IkL/L Notch1+/+ CD4-Cre+", "sample_id": [ "GSM590417", "GSM590418", "GSM590419" ], "type": "genotype/variation", "id": "GDS4174_1" }, { "dataset_id": "GDS4174", "description": "IkL/L Notch1f/f CD4-Cre+", "sample_id": [ "GSM590420", "GSM590421", "GSM590422" ], "type": "genotype/variation", "id": "GDS4174_2" }, { "dataset_id": "GDS4174", "description": "8-10 weeks", "sample_id": [ "GSM590420", "GSM590421", "GSM590422" ], "type": "age", "id": "GDS4174_3" }, { "dataset_id": "GDS4174", "description": "18-20 weeks", "sample_id": [ "GSM590417", "GSM590418", "GSM590419" ], "type": "age", "id": "GDS4174_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4174", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4174.tab", "compression": "gz" } ], [ [ "GDS4175.tab" ], { "title": "Imatinib effect on Philadelphia chromosome positive acute lymphoblastic leukemia cells", "description": "Analysis of Ph+ ALL cell lines (BV-173, NALM-1, SUP-B15, and TOM1) treated with tyrosine kinase inhibitor (TKI) imatinib. Ph encodes oncogenic BCR-ABL1 tyrosine kinase, which defines a subset of ALL with an unfavorable prognosis. Results provide insight into TKI resistance mechanisms in Ph+ ALL.", "type": "Expression profiling by array", "pubmed_id": "21593872", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE23743", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4175", "description": "BV-173", "sample_id": [ "GSM577857", "GSM577858" ], "type": "cell line", "id": "GDS4175_1" }, { "dataset_id": "GDS4175", "description": "NALM-1", "sample_id": [ "GSM577859", "GSM577860" ], "type": "cell line", "id": "GDS4175_2" }, { "dataset_id": "GDS4175", "description": "SUP-B15", "sample_id": [ "GSM577861", "GSM577862" ], "type": "cell line", "id": "GDS4175_3" }, { "dataset_id": "GDS4175", "description": "TOM-1", "sample_id": [ "GSM577863", "GSM577913" ], "type": "cell line", "id": "GDS4175_4" }, { "dataset_id": "GDS4175", "description": "imatinib", "sample_id": [ "GSM577858", "GSM577860", "GSM577862", "GSM577913" ], "type": "agent", "id": "GDS4175_5" }, { "dataset_id": "GDS4175", "description": "untreated", "sample_id": [ "GSM577857", "GSM577859", "GSM577861", "GSM577863" ], "type": "agent", "id": "GDS4175_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4175", "version": 1.0, "instances": "8", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4175.tab", "compression": "gz" } ], [ [ "GDS4176.tab" ], { "title": "Chronic lymphocytic leukemia: peripheral blood, bone marrow and lymph node matched samples", "description": "Analysis of purified CLL cells from 24 treatment-naive patients. Samples were obtained concurrently from peripheral blood (PB), bone marrow (BM) and/or lymph nodes (LN). Results provide insight into the role of the tissue microenvironment in the pathogenesis of CLL in vivo.", "type": "Expression profiling by array", "pubmed_id": "20940416", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "62", "value_type": "transformed count", "reference_series": "GSE21029", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4176", "description": "peripheral blood", "sample_id": [ "GSM525314", "GSM525315", "GSM525316", "GSM525317", "GSM525318", "GSM525319", "GSM525320", "GSM525321", "GSM525322", "GSM525323", "GSM525324", "GSM525325", "GSM525326", "GSM525327", "GSM525328", "GSM525329", "GSM525330", "GSM525331", "GSM525332", "GSM525333", "GSM525334", "GSM525335", "GSM525336", "GSM525337", "GSM525338", "GSM525339" ], "type": "tissue", "id": "GDS4176_1" }, { "dataset_id": "GDS4176", "description": "bone marrow", "sample_id": [ "GSM525340", "GSM525341", "GSM525342", "GSM525343", "GSM525344", "GSM525345", "GSM525346", "GSM525347", "GSM525348", "GSM525349", "GSM525350", "GSM525351", "GSM525352", "GSM525353", "GSM525354", "GSM525355", "GSM525356", "GSM525357", "GSM525358" ], "type": "tissue", "id": "GDS4176_2" }, { "dataset_id": "GDS4176", "description": "lymph node", "sample_id": [ "GSM525359", "GSM525360", "GSM525361", "GSM525362", "GSM525363", "GSM525364", "GSM525365", "GSM525366", "GSM525367", "GSM525368", "GSM525369", "GSM525370", "GSM525371", "GSM525372", "GSM525373", "GSM525374", "GSM525375" ], "type": "tissue", "id": "GDS4176_3" }, { "dataset_id": "GDS4176", "description": "patient 1", "sample_id": [ "GSM525314", "GSM525340", "GSM525359" ], "type": "individual", "id": "GDS4176_4" }, { "dataset_id": "GDS4176", "description": "patient 2", "sample_id": [ "GSM525315", "GSM525341", "GSM525360" ], "type": "individual", "id": "GDS4176_5" }, { "dataset_id": "GDS4176", "description": "patient 3", "sample_id": [ "GSM525316", "GSM525342", "GSM525361" ], "type": "individual", "id": "GDS4176_6" }, { "dataset_id": "GDS4176", "description": "patient 4", "sample_id": [ "GSM525317", "GSM525318", "GSM525343", "GSM525362" ], "type": "individual", "id": "GDS4176_7" }, { "dataset_id": "GDS4176", "description": "patient 5", "sample_id": [ "GSM525319", "GSM525363" ], "type": "individual", "id": "GDS4176_8" }, { "dataset_id": "GDS4176", "description": "patient 6", "sample_id": [ "GSM525320", "GSM525364" ], "type": "individual", "id": "GDS4176_9" }, { "dataset_id": "GDS4176", "description": "patient 7", "sample_id": [ "GSM525321", "GSM525365" ], "type": "individual", "id": "GDS4176_10" }, { "dataset_id": "GDS4176", "description": "patient 8", "sample_id": [ "GSM525322", "GSM525344", "GSM525366" ], "type": "individual", "id": "GDS4176_11" }, { "dataset_id": "GDS4176", "description": "patient 9", "sample_id": [ "GSM525323", "GSM525345", "GSM525367" ], "type": "individual", "id": "GDS4176_12" }, { "dataset_id": "GDS4176", "description": "patient 10", "sample_id": [ "GSM525324", "GSM525346", "GSM525368" ], "type": "individual", "id": "GDS4176_13" }, { "dataset_id": "GDS4176", "description": "patient 11", "sample_id": [ "GSM525325", "GSM525347", "GSM525369" ], "type": "individual", "id": "GDS4176_14" }, { "dataset_id": "GDS4176", "description": "patient 12", "sample_id": [ "GSM525326", "GSM525348", "GSM525370" ], "type": "individual", "id": "GDS4176_15" }, { "dataset_id": "GDS4176", "description": "patient 13", "sample_id": [ "GSM525327", "GSM525328", "GSM525349", "GSM525371" ], "type": "individual", "id": "GDS4176_16" }, { "dataset_id": "GDS4176", "description": "patient 14", "sample_id": [ "GSM525329", "GSM525372" ], "type": "individual", "id": "GDS4176_17" }, { "dataset_id": "GDS4176", "description": "patient 16", "sample_id": [ "GSM525330", "GSM525350" ], "type": "individual", "id": "GDS4176_18" }, { "dataset_id": "GDS4176", "description": "patient 18", "sample_id": [ "GSM525331", "GSM525351" ], "type": "individual", "id": "GDS4176_19" }, { "dataset_id": "GDS4176", "description": "patient 19", "sample_id": [ "GSM525332", "GSM525352" ], "type": "individual", "id": "GDS4176_20" }, { "dataset_id": "GDS4176", "description": "patient 20", "sample_id": [ "GSM525333", "GSM525353" ], "type": "individual", "id": "GDS4176_21" }, { "dataset_id": "GDS4176", "description": "patient 21", "sample_id": [ "GSM525334", "GSM525354" ], "type": "individual", "id": "GDS4176_22" }, { "dataset_id": "GDS4176", "description": "patient 22", "sample_id": [ "GSM525335", "GSM525355" ], "type": "individual", "id": "GDS4176_23" }, { "dataset_id": "GDS4176", "description": "patient 23", "sample_id": [ "GSM525336", "GSM525356" ], "type": "individual", "id": "GDS4176_24" }, { "dataset_id": "GDS4176", "description": "patient 24", "sample_id": [ "GSM525337", "GSM525373" ], "type": "individual", "id": "GDS4176_25" }, { "dataset_id": "GDS4176", "description": "patient 25", "sample_id": [ "GSM525338", "GSM525357", "GSM525374" ], "type": "individual", "id": "GDS4176_26" }, { "dataset_id": "GDS4176", "description": "patient 26", "sample_id": [ "GSM525339", "GSM525358", "GSM525375" ], "type": "individual", "id": "GDS4176_27" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4176", "version": 1.0, "instances": "62", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4176.tab", "compression": "gz" } ], [ [ "GDS4177.tab" ], { "title": "Imatinib treatment of chronic myeloid leukemia cell lines: KU-812, KCL-22 and JURL-MK1", "description": "Analysis of CML cell lines (KU-812, KCL-22, and JURL-MK1) treated with tyrosine kinase inhibitor imatinib. Imatinib inhibits oncogenic BCR-ABL1, a tyrosine kinase present in most CML patients. Results provide insight into molecular mechanisms underlying imatinib inhibition of CML.", "type": "Expression profiling by array", "pubmed_id": [ "21593872", "21911423" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE24493", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4177", "description": "KU-812", "sample_id": [ "GSM603099", "GSM603100" ], "type": "cell line", "id": "GDS4177_1" }, { "dataset_id": "GDS4177", "description": "KCL-22", "sample_id": [ "GSM603097", "GSM603098" ], "type": "cell line", "id": "GDS4177_2" }, { "dataset_id": "GDS4177", "description": "JURL-MK1", "sample_id": [ "GSM603101", "GSM603102" ], "type": "cell line", "id": "GDS4177_3" }, { "dataset_id": "GDS4177", "description": "Imatinib", "sample_id": [ "GSM603100", "GSM603098", "GSM603102" ], "type": "agent", "id": "GDS4177_4" }, { "dataset_id": "GDS4177", "description": "untreated", "sample_id": [ "GSM603099", "GSM603097", "GSM603101" ], "type": "agent", "id": "GDS4177_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4177", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4177.tab", "compression": "gz" } ], [ [ "GDS4178.tab" ], { "title": "Inhibitor of DNA Binding Protein 4 knockout effect on TCL1 model of chronic lymphocytic leukemia: CD19+ splenic B cells", "description": "Analysis of CD19+ splenic B cells from 1 month-old TCL1 transgenics deficient in inhibitor of DNA binding protein 4 (ID4+/\u2212TCL1-tg). ID4 transcriptional silencing is an early event in human CLL. Results provide insight into the role of ID4 in CLL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "21098398", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE25100", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4178", "description": "ID4+/+TCL1-tg", "sample_id": [ "GSM616665", "GSM616666", "GSM616667" ], "type": "genotype/variation", "id": "GDS4178_1" }, { "dataset_id": "GDS4178", "description": "ID4+/-TCL1-tg", "sample_id": [ "GSM616662", "GSM616663", "GSM616664" ], "type": "genotype/variation", "id": "GDS4178_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4178", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4178.tab", "compression": "gz" } ], [ [ "GDS4179.tab" ], { "title": "Hodgkin and non-Hodgkin lymphoma cell lines", "description": "Analysis of lymphoid cell lines of Hodgkin, non-Hodgkin, and acute leukemia origin. Aberrant NOTCH activity is involved in the pathogenesis of B cell-derived lymphomas. Results provide insight into the molecular basis of deregulated NOTCH activity.", "type": "Expression profiling by array", "pubmed_id": "21119597", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE20011", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4179", "description": "classical Hodgkin lymphoma", "sample_id": [ "GSM499721", "GSM499722", "GSM499723", "GSM499724", "GSM499725", "GSM499726", "GSM499729", "GSM499730", "GSM499731", "GSM499732" ], "type": "disease state", "id": "GDS4179_1" }, { "dataset_id": "GDS4179", "description": "Burkitt lymphoma", "sample_id": [ "GSM499728", "GSM499734" ], "type": "disease state", "id": "GDS4179_2" }, { "dataset_id": "GDS4179", "description": "B acute lymphoblastic leukemia", "sample_id": [ "GSM499727", "GSM499733" ], "type": "disease state", "id": "GDS4179_3" }, { "dataset_id": "GDS4179", "description": "B non Hodgkin lymphoma", "sample_id": [ "GSM499735" ], "type": "disease state", "id": "GDS4179_4" }, { "dataset_id": "GDS4179", "description": "L428", "sample_id": [ "GSM499721", "GSM499729" ], "type": "cell line", "id": "GDS4179_5" }, { "dataset_id": "GDS4179", "description": "L1236", "sample_id": [ "GSM499722", "GSM499730" ], "type": "cell line", "id": "GDS4179_6" }, { "dataset_id": "GDS4179", "description": "KM-H2", "sample_id": [ "GSM499723", "GSM499731" ], "type": "cell line", "id": "GDS4179_7" }, { "dataset_id": "GDS4179", "description": "HDLM2", "sample_id": [ "GSM499724", "GSM499732" ], "type": "cell line", "id": "GDS4179_8" }, { "dataset_id": "GDS4179", "description": "L540", "sample_id": [ "GSM499725" ], "type": "cell line", "id": "GDS4179_9" }, { "dataset_id": "GDS4179", "description": "L540Cy", "sample_id": [ "GSM499726" ], "type": "cell line", "id": "GDS4179_10" }, { "dataset_id": "GDS4179", "description": "SU-DHL-4", "sample_id": [ "GSM499735" ], "type": "cell line", "id": "GDS4179_11" }, { "dataset_id": "GDS4179", "description": "Namalwa", "sample_id": [ "GSM499728", "GSM499734" ], "type": "cell line", "id": "GDS4179_12" }, { "dataset_id": "GDS4179", "description": "Reh", "sample_id": [ "GSM499727", "GSM499733" ], "type": "cell line", "id": "GDS4179_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4179", "version": 1.0, "instances": "15", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4179.tab", "compression": "gz" } ], [ [ "GDS418.tab" ], { "title": "Leaf morphogenesis control by JAW microRNA", "description": "Investigation of the molecular basis of jaw-D uneven leaf shape and curvature phenotype. Aerial parts of two week old jaw-d mutant and control plants examined. JAW microRNA guides mRNA cleavage of several TCP genes controlling leaf development.", "type": "Expression profiling by array", "pubmed_id": "12931144", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE518", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS418", "description": "jaw-d", "sample_id": [ "GSM7756", "GSM7757" ], "type": "strain", "id": "GDS418_1" }, { "dataset_id": "GDS418", "description": "wild type", "sample_id": [ "GSM7754", "GSM7755" ], "type": "strain", "id": "GDS418_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS418", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS418.tab", "compression": "gz" } ], [ [ "GDS4180.tab" ], { "title": "All-trans-retinoic acid effect on transglutaminase 2-silenced, NB4 model of acute promyelocytic leukemia: time course", "description": "Analysis of stable TG2-knockdown NB4 APL cells induced to differentiate in the presence of all-trans-retinoic acid (ATRA) for up to 72 hrs. Silencing of TG2 delays the differentiation process of NB4 cells. Results provide insight into the role of TG2 in the ATRA-induced differentiation of NB4 cells.", "type": "Expression profiling by array", "pubmed_id": "20739659", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE23702", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4180", "description": "transglutaminase 2 knockout", "sample_id": [ "GSM594070", "GSM594071", "GSM594072", "GSM594076", "GSM594077", "GSM594078", "GSM594082", "GSM594083", "GSM594084" ], "type": "genotype/variation", "id": "GDS4180_1" }, { "dataset_id": "GDS4180", "description": "wild type", "sample_id": [ "GSM594067", "GSM594068", "GSM594069", "GSM594073", "GSM594074", "GSM594075", "GSM594079", "GSM594080", "GSM594081" ], "type": "genotype/variation", "id": "GDS4180_2" }, { "dataset_id": "GDS4180", "description": "untreated", "sample_id": [ "GSM594067", "GSM594068", "GSM594069", "GSM594070", "GSM594071", "GSM594072" ], "type": "agent", "id": "GDS4180_3" }, { "dataset_id": "GDS4180", "description": "all-trans-retinoic acid", "sample_id": [ "GSM594073", "GSM594074", "GSM594075", "GSM594076", "GSM594077", "GSM594078", "GSM594079", "GSM594080", "GSM594081", "GSM594082", "GSM594083", "GSM594084" ], "type": "agent", "id": "GDS4180_4" }, { "dataset_id": "GDS4180", "description": "control", "sample_id": [ "GSM594067", "GSM594068", "GSM594069", "GSM594070", "GSM594071", "GSM594072" ], "type": "time", "id": "GDS4180_5" }, { "dataset_id": "GDS4180", "description": "48 hours", "sample_id": [ "GSM594073", "GSM594074", "GSM594075", "GSM594076", "GSM594077", "GSM594078" ], "type": "time", "id": "GDS4180_6" }, { "dataset_id": "GDS4180", "description": "72 hours", "sample_id": [ "GSM594079", "GSM594080", "GSM594081", "GSM594082", "GSM594083", "GSM594084" ], "type": "time", "id": "GDS4180_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4180", "version": 1.0, "instances": "18", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4180.tab", "compression": "gz" } ], [ [ "GDS4181.tab" ], { "title": "WHO 2008-classified acute myeloid leukemia subgroups (Analysis I): bone marrow mononuclear cells", "description": "Analysis of BMMCs from untreated patients diagnosed as AML-MLD-sole (AML with myelodysplasia-related changes solely because of multilineage dysplasia) or AML-NOS (AML-not otherwise specified) according to WHO 2008 guidelines. Results provide insight into the relevance of MLD for AML classification.", "type": "Expression profiling by array", "pubmed_id": "20581309", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "80", "value_type": "transformed count", "reference_series": "GSE21261", "order": "none", "update_date": "Nov 05 2013", "subsets": [ { "dataset_id": "GDS4181", "description": "AML-not otherwise specified (AML-NOS)", "sample_id": [ "GSM531602", "GSM531604", "GSM531606", "GSM531607", "GSM531608", "GSM531610", "GSM531612", "GSM531613", "GSM531614", "GSM531616", "GSM531618", "GSM531619", "GSM531620", "GSM531623", "GSM531625", "GSM531626", "GSM531632", "GSM531638", "GSM531639", "GSM531641", "GSM531642", "GSM531643", "GSM531644", "GSM531645", "GSM531646", "GSM531647", "GSM531648", "GSM531650", "GSM531651", "GSM531652", "GSM531656", "GSM531659", "GSM531661", "GSM531662", "GSM531663", "GSM531664", "GSM531666", "GSM531667", "GSM531668", "GSM531669", "GSM531671", "GSM531672", "GSM531673", "GSM531676", "GSM531679", "GSM531681", "GSM531682", "GSM531683", "GSM531684", "GSM531685", "GSM531686", "GSM531687", "GSM531688", "GSM531690", "GSM531693", "GSM531695" ], "type": "disease state", "id": "GDS4181_1" }, { "dataset_id": "GDS4181", "description": "AML-multilineage dysplasia sole (AML-MLD-sole)", "sample_id": [ "GSM531603", "GSM531609", "GSM531611", "GSM531621", "GSM531622", "GSM531628", "GSM531630", "GSM531633", "GSM531635", "GSM531640", "GSM531649", "GSM531653", "GSM531657", "GSM531665", "GSM531670", "GSM531674", "GSM531675", "GSM531677", "GSM531678", "GSM531680", "GSM531689", "GSM531691", "GSM531692", "GSM531694" ], "type": "disease state", "id": "GDS4181_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4181", "version": 1.0, "instances": "80", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4181.tab", "compression": "gz" } ], [ [ "GDS4182.tab" ], { "title": "WHO 2008-classified acute myeloid leukemia subgroups (Analysis II): bone marrow mononuclear cells", "description": "Analysis of BMMCs from untreated patients with AML-MRC (AML with myelodysplasia-related changes) and from the combined group AML-NOS plus AML-MLD-sole on the basis of cytogenetics or a myelodysplastic syndrome (MDS) history. Results provide insight into the relevance of MLD for AML classification.", "type": "Expression profiling by array", "pubmed_id": "20581309", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "transformed count", "reference_series": "GSE21261", "order": "none", "update_date": "Nov 05 2013", "subsets": [ { "dataset_id": "GDS4182", "description": "AML-myelodysplasia related changes (AML-MRC)", "sample_id": [ "GSM531600", "GSM531601", "GSM531605", "GSM531615", "GSM531617", "GSM531624", "GSM531627", "GSM531629", "GSM531631", "GSM531634", "GSM531636", "GSM531637", "GSM531654", "GSM531655", "GSM531658", "GSM531660" ], "type": "disease state", "id": "GDS4182_1" }, { "dataset_id": "GDS4182", "description": "AML-multilineage dysplasia sole + AML-not otherwise specified (AML-MLD-sole + AML-NOS)", "sample_id": [ "GSM531602", "GSM531604", "GSM531606", "GSM531607", "GSM531608", "GSM531610", "GSM531612", "GSM531613", "GSM531614", "GSM531616", "GSM531618", "GSM531619", "GSM531620", "GSM531623", "GSM531625", "GSM531626", "GSM531632", "GSM531638", "GSM531639", "GSM531641", "GSM531642", "GSM531643", "GSM531644", "GSM531645", "GSM531646", "GSM531647", "GSM531648", "GSM531650", "GSM531651", "GSM531652", "GSM531656", "GSM531659", "GSM531661", "GSM531662", "GSM531663", "GSM531664", "GSM531666", "GSM531667", "GSM531668", "GSM531669", "GSM531671", "GSM531672", "GSM531673", "GSM531676", "GSM531679", "GSM531681", "GSM531682", "GSM531683", "GSM531684", "GSM531685", "GSM531686", "GSM531687", "GSM531688", "GSM531690", "GSM531693", "GSM531695", "GSM531603", "GSM531609", "GSM531611", "GSM531621", "GSM531622", "GSM531628", "GSM531630", "GSM531633", "GSM531635", "GSM531640", "GSM531649", "GSM531653", "GSM531657", "GSM531665", "GSM531670", "GSM531674", "GSM531675", "GSM531677", "GSM531678", "GSM531680", "GSM531689", "GSM531691", "GSM531692", "GSM531694" ], "type": "disease state", "id": "GDS4182_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4182", "version": 1.0, "instances": "96", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4182.tab", "compression": "gz" } ], [ [ "GDS4185.tab" ], { "title": "Systemic Lupus Erythematosus: mononuclear cells", "description": "Analysis of freshly isolated lymphocyte (CD4+ T cells and CD19+ B cells) and CD33+ myeloid subsets from the blood of Systemic Lupus Erythematosus (SLE) patients. Results provide insight into the molecular mechanisms underlying SLE pathogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "18275831", "23826184" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "67", "value_type": "count", "reference_series": "GSE10325", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4185", "description": "healthy control", "sample_id": [ "GSM260911", "GSM260908", "GSM260905", "GSM260902", "GSM260899", "GSM260896", "GSM260893", "GSM260913", "GSM260912", "GSM260888", "GSM260909", "GSM260906", "GSM260903", "GSM260900", "GSM260897", "GSM260894", "GSM260891", "GSM260889", "GSM260886", "GSM260910", "GSM260907", "GSM260904", "GSM260901", "GSM260898", "GSM260895", "GSM260892", "GSM260890", "GSM260887" ], "type": "disease state", "id": "GDS4185_1" }, { "dataset_id": "GDS4185", "description": "Systemic Lupus Erythematosus", "sample_id": [ "GSM260938", "GSM260935", "GSM260932", "GSM260929", "GSM260924", "GSM260921", "GSM260918", "GSM260952", "GSM260947", "GSM260944", "GSM260941", "GSM260936", "GSM260933", "GSM260930", "GSM260927", "GSM260925", "GSM260922", "GSM260919", "GSM260916", "GSM260950", "GSM260948", "GSM260945", "GSM260942", "GSM260939", "GSM260914", "GSM260937", "GSM260934", "GSM260931", "GSM260928", "GSM260926", "GSM260923", "GSM260920", "GSM260917", "GSM260951", "GSM260949", "GSM260946", "GSM260943", "GSM260940", "GSM260915" ], "type": "disease state", "id": "GDS4185_2" }, { "dataset_id": "GDS4185", "description": "myeloid", "sample_id": [ "GSM260911", "GSM260908", "GSM260905", "GSM260902", "GSM260899", "GSM260896", "GSM260893", "GSM260913", "GSM260912", "GSM260888", "GSM260938", "GSM260935", "GSM260932", "GSM260929", "GSM260924", "GSM260921", "GSM260918", "GSM260952", "GSM260947", "GSM260944", "GSM260941" ], "type": "cell type", "id": "GDS4185_3" }, { "dataset_id": "GDS4185", "description": "CD4+ T", "sample_id": [ "GSM260909", "GSM260906", "GSM260903", "GSM260900", "GSM260897", "GSM260894", "GSM260891", "GSM260889", "GSM260886", "GSM260936", "GSM260933", "GSM260930", "GSM260927", "GSM260925", "GSM260922", "GSM260919", "GSM260916", "GSM260950", "GSM260948", "GSM260945", "GSM260942", "GSM260939", "GSM260914" ], "type": "cell type", "id": "GDS4185_4" }, { "dataset_id": "GDS4185", "description": "CD19+ B", "sample_id": [ "GSM260937", "GSM260934", "GSM260931", "GSM260928", "GSM260926", "GSM260923", "GSM260920", "GSM260917", "GSM260951", "GSM260949", "GSM260946", "GSM260943", "GSM260940", "GSM260915", "GSM260910", "GSM260907", "GSM260904", "GSM260901", "GSM260898", "GSM260895", "GSM260892", "GSM260890", "GSM260887" ], "type": "cell type", "id": "GDS4185_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4185", "version": 1.0, "instances": "67", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4185.tab", "compression": "gz" } ], [ [ "GDS4186.tab" ], { "title": "Lupus nephritis model response to sirolimus-induced mTOR inhibition (Mu11KsubA)", "description": "Analysis of kidney from sirolimus-treated NZB/W F1 females at 36 and 42 weeks of age. Sirolimus, a mammalian target of rapamycin (mTOR) inhibitor, has been efficacious in the NZB/W model of lupus nephritis. Results provide insight into role of the mTOR pathway in autoimmune lupus nephritis.", "type": "Expression profiling by array", "pubmed_id": "18980674", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE12024", "order": "none", "update_date": "Nov 05 2013", "subsets": [ { "dataset_id": "GDS4186", "description": "12 weeks", "sample_id": [ "GSM303966", "GSM303972", "GSM303986", "GSM303991" ], "type": "age", "id": "GDS4186_1" }, { "dataset_id": "GDS4186", "description": "36 weeks", "sample_id": [ "GSM303980", "GSM303979", "GSM303971", "GSM303985", "GSM303973", "GSM303961" ], "type": "age", "id": "GDS4186_2" }, { "dataset_id": "GDS4186", "description": "42 weeks", "sample_id": [ "GSM303981", "GSM303962", "GSM303965", "GSM303978", "GSM303968", "GSM303982" ], "type": "age", "id": "GDS4186_3" }, { "dataset_id": "GDS4186", "description": "sirolimus", "sample_id": [ "GSM303961", "GSM303979", "GSM303985", "GSM303962", "GSM303978", "GSM303982" ], "type": "agent", "id": "GDS4186_4" }, { "dataset_id": "GDS4186", "description": "untreated", "sample_id": [ "GSM303965", "GSM303968", "GSM303981", "GSM303971", "GSM303973", "GSM303980", "GSM303966", "GSM303972", "GSM303986", "GSM303991" ], "type": "agent", "id": "GDS4186_5" }, { "dataset_id": "GDS4186", "description": "symptomatic (lupus nephritis)", "sample_id": [ "GSM303971", "GSM303973", "GSM303980", "GSM303965", "GSM303968", "GSM303981" ], "type": "disease state", "id": "GDS4186_6" }, { "dataset_id": "GDS4186", "description": "asymptomatic", "sample_id": [ "GSM303966", "GSM303972", "GSM303986", "GSM303991", "GSM303961", "GSM303979", "GSM303985", "GSM303962", "GSM303978", "GSM303982" ], "type": "disease state", "id": "GDS4186_7" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS4186", "version": 1.0, "instances": "16", "variables": 5676, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4186.tab", "compression": "gz" } ], [ [ "GDS4188.tab" ], { "title": "CD3+ T cell response to stimulation with CD3/CD28 or nitric oxide", "description": "Analysis of healthy T cells stimulated with CD3/CD28 (a Ca2+ fluxing inducer) or NO (a key trigger of mitochondrial hyperpolarization (MHP)). Enhanced Ca2+ fluxing and MHP underlie aberrant T-cell activation in SLE. Results provide insight into the molecular basis of T cell dysfunction in lupus.", "type": "Expression profiling by array", "pubmed_id": "19201859", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE13887", "order": "none", "update_date": "Jan 07 2014", "subsets": [ { "dataset_id": "GDS4188", "description": "Nitric Oxide (NOC-18)", "sample_id": [ "GSM349725", "GSM349731", "GSM349736", "GSM349740" ], "type": "agent", "id": "GDS4188_1" }, { "dataset_id": "GDS4188", "description": "CD3/CD28", "sample_id": [ "GSM349737", "GSM349733", "GSM349727", "GSM349741" ], "type": "agent", "id": "GDS4188_2" }, { "dataset_id": "GDS4188", "description": "control", "sample_id": [ "GSM349729", "GSM349730", "GSM349734", "GSM349739" ], "type": "agent", "id": "GDS4188_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4188", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4188.tab", "compression": "gz" } ], [ [ "GDS4189.tab" ], { "title": "Pristane-induced plasmacytoma tumor model: time course", "description": "Analysis of mesentery from BALB/c, DBA, and BALB/DBA animals up to 18 days after intraperitoneal injection of pristane (TMPD). TMPD induces B-cell plasmacytoma (PCT) in 60% of BALB/c animals, but DBA animals remain tumor-free. Results provide insight into the molecular basis of PCT susceptibility.", "type": "Expression profiling by array", "pubmed_id": "19654412", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE17297", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4189", "description": "BALB/c", "sample_id": [ "GSM432907", "GSM432908", "GSM432909", "GSM432894", "GSM432895", "GSM432896", "GSM432897", "GSM432890", "GSM432891", "GSM432892", "GSM432893", "GSM432904", "GSM432905", "GSM432906" ], "type": "strain", "id": "GDS4189_1" }, { "dataset_id": "GDS4189", "description": "DBA", "sample_id": [ "GSM432901", "GSM432902", "GSM432903", "GSM432919", "GSM432920", "GSM432921", "GSM432898", "GSM432899", "GSM432900", "GSM432916", "GSM432917", "GSM432918" ], "type": "strain", "id": "GDS4189_2" }, { "dataset_id": "GDS4189", "description": "BALB/DBA F1 hybrid", "sample_id": [ "GSM432913", "GSM432914", "GSM432915", "GSM432910", "GSM432911", "GSM432912" ], "type": "strain", "id": "GDS4189_3" }, { "dataset_id": "GDS4189", "description": "untreated", "sample_id": [ "GSM432907", "GSM432908", "GSM432909", "GSM432894", "GSM432895", "GSM432896", "GSM432897", "GSM432913", "GSM432914", "GSM432915", "GSM432901", "GSM432902", "GSM432903", "GSM432919", "GSM432920", "GSM432921" ], "type": "agent", "id": "GDS4189_4" }, { "dataset_id": "GDS4189", "description": "pristane", "sample_id": [ "GSM432890", "GSM432891", "GSM432892", "GSM432893", "GSM432904", "GSM432905", "GSM432906", "GSM432910", "GSM432911", "GSM432912", "GSM432898", "GSM432899", "GSM432900", "GSM432916", "GSM432917", "GSM432918" ], "type": "agent", "id": "GDS4189_5" }, { "dataset_id": "GDS4189", "description": "control", "sample_id": [ "GSM432894", "GSM432895", "GSM432896", "GSM432897", "GSM432901", "GSM432902", "GSM432903", "GSM432907", "GSM432908", "GSM432909", "GSM432919", "GSM432920", "GSM432921", "GSM432913", "GSM432914", "GSM432915" ], "type": "time", "id": "GDS4189_6" }, { "dataset_id": "GDS4189", "description": "day 3", "sample_id": [ "GSM432904", "GSM432905", "GSM432906", "GSM432910", "GSM432911", "GSM432912", "GSM432916", "GSM432917", "GSM432918" ], "type": "time", "id": "GDS4189_7" }, { "dataset_id": "GDS4189", "description": "day 18", "sample_id": [ "GSM432890", "GSM432891", "GSM432892", "GSM432893", "GSM432898", "GSM432899", "GSM432900" ], "type": "time", "id": "GDS4189_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4189", "version": 1.0, "instances": "32", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4189.tab", "compression": "gz" } ], [ [ "GDS4190.tab" ], { "title": "Aged, lupus-prone MRL/Faslpr model: splenic CD4 T cells", "description": "Analysis of CD4 T cells isolated from spleens of aged (16-24 wks) MRL/Faslpr females and sorted into 3 populations: CD62Lhi/PSGL1hi, CD62Llo/PSGL1hi, and CD62Llo/PSGL1lo. MRL/Faslpr animals exhibit lupus disease traits from 12-16 wks. Results provide insight into molecular basis of lupus onset.", "type": "Expression profiling by array", "pubmed_id": "20519643", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE20735", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4190", "description": "CD62Lhi PSGL1hi (CD44hi)", "sample_id": [ "GSM520509", "GSM520512", "GSM520515" ], "type": "genotype/variation", "id": "GDS4190_1" }, { "dataset_id": "GDS4190", "description": "CD62Llo PSGL1lo (CD44hi)", "sample_id": [ "GSM520517", "GSM520514", "GSM520511" ], "type": "genotype/variation", "id": "GDS4190_2" }, { "dataset_id": "GDS4190", "description": "CD62Llo PSGL1hi (CD44hi)", "sample_id": [ "GSM520516", "GSM520513", "GSM520510" ], "type": "genotype/variation", "id": "GDS4190_3" }, { "dataset_id": "GDS4190", "description": "naive CD62Lhi (CD44lo)", "sample_id": [ "GSM520520", "GSM520519", "GSM520518" ], "type": "genotype/variation", "id": "GDS4190_4" }, { "dataset_id": "GDS4190", "description": "TCRb+ CD4+ B220- CD44+ T cells", "sample_id": [ "GSM520509", "GSM520510", "GSM520511", "GSM520512", "GSM520513", "GSM520514", "GSM520515", "GSM520516", "GSM520517" ], "type": "cell type", "id": "GDS4190_5" }, { "dataset_id": "GDS4190", "description": "TCRb+ CD4+ B220- T cells", "sample_id": [ "GSM520518", "GSM520519", "GSM520520" ], "type": "cell type", "id": "GDS4190_6" }, { "dataset_id": "GDS4190", "description": "6-8 weeks", "sample_id": [ "GSM520518", "GSM520519", "GSM520520" ], "type": "age", "id": "GDS4190_7" }, { "dataset_id": "GDS4190", "description": "16-24 weeks", "sample_id": [ "GSM520509", "GSM520510", "GSM520511", "GSM520512", "GSM520513", "GSM520514", "GSM520515", "GSM520516", "GSM520517" ], "type": "age", "id": "GDS4190_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4190", "version": 1.0, "instances": "12", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4190.tab", "compression": "gz" } ], [ [ "GDS4191.tab" ], { "title": "NZM2410-derived lupus susceptibility locus Sle2c1: peritoneal cavity B cells", "description": "Analysis of peritoneal cavity B cells (B1a) and splenic B (sB) cells from B6.Sle2c1 mice. Sle2 induces expansion of the B1a cell compartment, a B cell defect consistently associated with lupus. Results provide insight into molecular mechanisms underlying susceptibility to lupus in the NZM2410 model.", "type": "Expression profiling by array", "pubmed_id": "21543644", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE23114", "order": "none", "update_date": "Mar 30 2014", "subsets": [ { "dataset_id": "GDS4191", "description": "C57BL/6", "sample_id": [ "GSM569443", "GSM569444", "GSM569445", "GSM569446", "GSM569451", "GSM569452", "GSM569453", "GSM569454" ], "type": "strain", "id": "GDS4191_1" }, { "dataset_id": "GDS4191", "description": "B6.Sle2c1", "sample_id": [ "GSM569447", "GSM569448", "GSM569449", "GSM569450", "GSM569455", "GSM569456", "GSM569457", "GSM569458" ], "type": "strain", "id": "GDS4191_2" }, { "dataset_id": "GDS4191", "description": "peritoneal cavity B cells (B1a)", "sample_id": [ "GSM569447", "GSM569448", "GSM569449", "GSM569450", "GSM569443", "GSM569444", "GSM569445", "GSM569446" ], "type": "cell type", "id": "GDS4191_3" }, { "dataset_id": "GDS4191", "description": "splenic B cells (sB)", "sample_id": [ "GSM569451", "GSM569452", "GSM569453", "GSM569454", "GSM569455", "GSM569456", "GSM569457", "GSM569458" ], "type": "cell type", "id": "GDS4191_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4191", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4191.tab", "compression": "gz" } ], [ [ "GDS4193.tab" ], { "title": "Quiescent systemic lupus erythematosus: peripheral blood B cells", "description": "Analysis of B cells sorted from the peripheral blood of patients with quiescent lupus (inactive > 6 months). B cell activation and production of a wide variety of autoantibodies appear central to lupus development. Results provide insight into molecular mechanisms underlying systemic lupus.", "type": "Expression profiling by array", "pubmed_id": "21886837", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE30153", "order": "none", "update_date": "Feb 11 2014", "subsets": [ { "dataset_id": "GDS4193", "description": "inactive lupus", "sample_id": [ "GSM746726", "GSM746727", "GSM746728", "GSM746729", "GSM746730", "GSM746731", "GSM746732", "GSM746733", "GSM746734", "GSM746735", "GSM746736", "GSM746737", "GSM746738", "GSM746739", "GSM746740", "GSM746741", "GSM746742" ], "type": "disease state", "id": "GDS4193_1" }, { "dataset_id": "GDS4193", "description": "healthy control", "sample_id": [ "GSM746743", "GSM746744", "GSM746745", "GSM746746", "GSM746747", "GSM746748", "GSM746750", "GSM746751", "GSM746752" ], "type": "disease state", "id": "GDS4193_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4193", "version": 1.0, "instances": "26", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4193.tab", "compression": "gz" } ], [ [ "GDS4194.tab" ], { "title": "NZB/W model of systemic lupus erythematosus: renal macrophages", "description": "Analysis of F4/80hi renal macrophages isolated at an early stage of lupus, during lupus nephritis, and after induction of remission. The infiltrating F4/80hi cells are associated with renal damage. Results provide insight into mechanisms by which F4/80hi macrophages contribute to lupus nephritis.", "type": "Expression profiling by array", "pubmed_id": "21411733", "platform": "GPL7546", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "16539", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE27045", "order": "none", "update_date": "Feb 11 2014", "subsets": [ { "dataset_id": "GDS4194", "description": "prenephritic kidney", "sample_id": [ "GSM667532", "GSM667533", "GSM667534", "GSM667535", "GSM667536", "GSM667537" ], "type": "tissue", "id": "GDS4194_1" }, { "dataset_id": "GDS4194", "description": "lupus nephritic kidney", "sample_id": [ "GSM667538", "GSM667539", "GSM667540", "GSM667541", "GSM667542", "GSM667543", "GSM667544" ], "type": "tissue", "id": "GDS4194_2" }, { "dataset_id": "GDS4194", "description": "remission kidney", "sample_id": [ "GSM667545", "GSM667546", "GSM667547", "GSM667548" ], "type": "tissue", "id": "GDS4194_3" } ], "taxid": "10090", "genes": 16476, "aggregation_function": "mean", "name": "GDS4194", "version": 1.0, "instances": "17", "variables": 16478, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4194.tab", "compression": "gz" } ], [ [ "GDS4195.tab" ], { "title": "Systemic lupus erythematosus and arthritides: synovial biopsies", "description": "Analysis of synovial biopsies obtained by needle arthroscopy from affected knees of patients with systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), or osteoarthritis (OA). Results provide insight into distinct molecular mechanisms underlying SLE arthritis relative to those of OA and RA.", "type": "Expression profiling by array", "pubmed_id": "17469140", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE36700", "order": "none", "update_date": "Feb 11 2014", "subsets": [ { "dataset_id": "GDS4195", "description": "Osteoarthritis", "sample_id": [ "GSM898470", "GSM899010", "GSM899011", "GSM899012", "GSM899013" ], "type": "disease state", "id": "GDS4195_1" }, { "dataset_id": "GDS4195", "description": "Rheumatoid arthritis", "sample_id": [ "GSM899014", "GSM899015", "GSM899016", "GSM899017", "GSM899018", "GSM899019", "GSM899020" ], "type": "disease state", "id": "GDS4195_2" }, { "dataset_id": "GDS4195", "description": "Systemic lupus erythematosus", "sample_id": [ "GSM899021", "GSM899022", "GSM899023", "GSM899024" ], "type": "disease state", "id": "GDS4195_3" }, { "dataset_id": "GDS4195", "description": "Microcrystalline arthritis", "sample_id": [ "GSM899025", "GSM899026", "GSM899027", "GSM899028", "GSM899029" ], "type": "disease state", "id": "GDS4195_4" }, { "dataset_id": "GDS4195", "description": "Seronegative arthritis", "sample_id": [ "GSM899030", "GSM899031", "GSM899032", "GSM899033" ], "type": "disease state", "id": "GDS4195_5" }, { "dataset_id": "GDS4195", "description": "female", "sample_id": [ "GSM898470", "GSM899010", "GSM899011", "GSM899012", "GSM899016", "GSM899020", "GSM899021", "GSM899022", "GSM899023", "GSM899024", "GSM899029", "GSM899030", "GSM899031" ], "type": "gender", "id": "GDS4195_6" }, { "dataset_id": "GDS4195", "description": "male", "sample_id": [ "GSM899013", "GSM899014", "GSM899015", "GSM899017", "GSM899018", "GSM899019", "GSM899025", "GSM899026", "GSM899027", "GSM899028", "GSM899032", "GSM899033" ], "type": "gender", "id": "GDS4195_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4195", "version": 1.0, "instances": "25", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4195.tab", "compression": "gz" } ], [ [ "GDS4196.tab" ], { "title": "Lysophosphatidic acid effect on RhoA GEF Exchange Factor NET1-deficient, AGS gastric adenocarcinoma cells", "description": "Analysis of AGS gastric cancer (GC) cells depleted of NET1, a guanine exchange factor (GEF) for RhoA, and treated with lysophosphatidic acid, a RhoA activator. NET1 is up-regulated in GC and drives its aggressive phenotype. Results provide insight into the role of NET1 in GC.", "type": "Expression profiling by array", "pubmed_id": "21284875", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE26309", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4196", "description": "control", "sample_id": [ "GSM646069", "GSM646070", "GSM646075", "GSM646076" ], "type": "genotype/variation", "id": "GDS4196_1" }, { "dataset_id": "GDS4196", "description": "NET1 knockdown (63 shRNA)", "sample_id": [ "GSM646066", "GSM646071", "GSM646072", "GSM646065" ], "type": "genotype/variation", "id": "GDS4196_2" }, { "dataset_id": "GDS4196", "description": "NET1 knockdown (65 shRNA)", "sample_id": [ "GSM646073", "GSM646067", "GSM646068", "GSM646074" ], "type": "genotype/variation", "id": "GDS4196_3" }, { "dataset_id": "GDS4196", "description": "lysophosphatidic acid", "sample_id": [ "GSM646065", "GSM646066", "GSM646067", "GSM646068", "GSM646069", "GSM646070" ], "type": "agent", "id": "GDS4196_4" }, { "dataset_id": "GDS4196", "description": "untreated", "sample_id": [ "GSM646074", "GSM646071", "GSM646072", "GSM646073", "GSM646075", "GSM646076" ], "type": "agent", "id": "GDS4196_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4196", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4196.tab", "compression": "gz" } ], [ [ "GDS4198.tab" ], { "title": "Australian patient cohort: gastric adenocarcinoma", "description": "Analysis of 70 primary gastric tumors representing 3 subtypes (invasive, metabolic, and proliferative) from the Australian patient cohort (AU-2). Gastric adenocarcinomas show sizable heterogeneity between patients. Results provide insight into molecular characterization of gastric cancer subtypes.", "type": "Expression profiling by array", "pubmed_id": [ "22735568", "25053715", "23684942" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "70", "value_type": "transformed count", "reference_series": "GSE35809", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4198", "description": "gastric cancer subtype: invasive", "sample_id": [ "GSM875413", "GSM875415", "GSM875416", "GSM875417", "GSM875418", "GSM875423", "GSM875424", "GSM875425", "GSM875430", "GSM875432", "GSM875435", "GSM875436", "GSM875437", "GSM875447", "GSM875451", "GSM875456", "GSM875461", "GSM875462", "GSM875465", "GSM875469", "GSM875470", "GSM875471", "GSM875472", "GSM875475", "GSM875476", "GSM875477" ], "type": "disease state", "id": "GDS4198_1" }, { "dataset_id": "GDS4198", "description": "gastric cancer subtype: metabolic", "sample_id": [ "GSM875414", "GSM875427", "GSM875431", "GSM875433", "GSM875443", "GSM875444", "GSM875445", "GSM875449", "GSM875450", "GSM875452", "GSM875454", "GSM875457", "GSM875458", "GSM875467", "GSM875468" ], "type": "disease state", "id": "GDS4198_2" }, { "dataset_id": "GDS4198", "description": "gastric cancer subtype: proliferative", "sample_id": [ "GSM875412", "GSM875419", "GSM875420", "GSM875421", "GSM875422", "GSM875426", "GSM875428", "GSM875429", "GSM875434", "GSM875438", "GSM875439", "GSM875440", "GSM875441", "GSM875442", "GSM875446", "GSM875448", "GSM875453", "GSM875455", "GSM875459", "GSM875460", "GSM875463", "GSM875464", "GSM875466", "GSM875473", "GSM875474", "GSM875478", "GSM875479", "GSM875480", "GSM875481" ], "type": "disease state", "id": "GDS4198_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4198", "version": 1.0, "instances": "70", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4198.tab", "compression": "gz" } ], [ [ "GDS4199.tab" ], { "title": "Wild-type embryonic stem cell rescue of mdx model of Duchenne muscular dystrophy: skeletal muscle", "description": "Analysis of pectoralis muscle from 4 month-old, wildtype/mdx chimeric males. Chimeras were created by injecting WT ESCs into mdx mutant blastocysts; injected blastocysts developed in the uterus of pseudopregnant females. Results provide insight into molecular basis of WT ESC rescue of mdx mice.", "type": "Expression profiling by array", "pubmed_id": "19277212", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE12580", "order": "none", "update_date": "Feb 11 2014", "subsets": [ { "dataset_id": "GDS4199", "description": "mdx", "sample_id": [ "GSM315595" ], "type": "genotype/variation", "id": "GDS4199_1" }, { "dataset_id": "GDS4199", "description": "mdx/mdx chimera", "sample_id": [ "GSM315596" ], "type": "genotype/variation", "id": "GDS4199_2" }, { "dataset_id": "GDS4199", "description": "WT/mdx chimera", "sample_id": [ "GSM315597" ], "type": "genotype/variation", "id": "GDS4199_3" }, { "dataset_id": "GDS4199", "description": "WT", "sample_id": [ "GSM315598" ], "type": "genotype/variation", "id": "GDS4199_4" }, { "dataset_id": "GDS4199", "description": "WT/WT chimera", "sample_id": [ "GSM315599" ], "type": "genotype/variation", "id": "GDS4199_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4199", "version": 1.0, "instances": "5", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4199.tab", "compression": "gz" } ], [ [ "GDS420.tab" ], { "title": "Severe combined immunodeficiency (HG-U133A)", "description": "Investigation of molecular basis for immunodeficiency in severe combined immunodeficiency (SCID) patient. Thymocytes isolated from SCID patient compared with control subject.", "type": "Expression profiling by array", "pubmed_id": "14602880", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE609", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS420", "description": "SCID", "sample_id": [ "GSM9237" ], "type": "disease state", "id": "GDS420_1" }, { "dataset_id": "GDS420", "description": "control", "sample_id": [ "GSM9236" ], "type": "disease state", "id": "GDS420_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS420", "version": 1.0, "instances": "2", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS420.tab", "compression": "gz" } ], [ [ "GDS4200.tab" ], { "title": "Cmah knockout effect on mdx model of Duchenne Muscular Dystrophy (DMD): skeletal muscle", "description": "Analysis of muscle from mdx males with a human-specific deletion in the Cmah (cytidine monophosphate-sialic acid hydroxylase) gene. Cmah-/-mdx mice show increased disease severity that better approximates DMD in humans. Results provide insight into the contributions of glycosylation defects to DMD.", "type": "Expression profiling by array", "pubmed_id": "20668298", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE16438", "order": "none", "update_date": "Feb 14 2014", "subsets": [ { "dataset_id": "GDS4200", "description": "wild type", "sample_id": [ "GSM413161", "GSM413160", "GSM413159" ], "type": "genotype/variation", "id": "GDS4200_1" }, { "dataset_id": "GDS4200", "description": "Cmah knockout", "sample_id": [ "GSM413164", "GSM413163", "GSM413162" ], "type": "genotype/variation", "id": "GDS4200_2" }, { "dataset_id": "GDS4200", "description": "Cmah knockout, mdx", "sample_id": [ "GSM413170", "GSM413169", "GSM413168" ], "type": "genotype/variation", "id": "GDS4200_3" }, { "dataset_id": "GDS4200", "description": "mdx", "sample_id": [ "GSM413167", "GSM413166", "GSM413165" ], "type": "genotype/variation", "id": "GDS4200_4" }, { "dataset_id": "GDS4200", "description": "C57BL/6J", "sample_id": [ "GSM413159", "GSM413160", "GSM413161", "GSM413162", "GSM413163", "GSM413164" ], "type": "strain", "id": "GDS4200_5" }, { "dataset_id": "GDS4200", "description": "C57BL6/10J", "sample_id": [ "GSM413165", "GSM413166", "GSM413167", "GSM413168", "GSM413169", "GSM413170" ], "type": "strain", "id": "GDS4200_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4200", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4200.tab", "compression": "gz" } ], [ [ "GDS4201.tab" ], { "title": "Chronic hypoxia effect on dmDys model of Duchenne Muscular Dystrophy: single whole animal", "description": "Analysis of 3-5 day-old dystrophin-deficient animals exposed to chronic hypoxia (CH) for 2 weeks. Respiratory muscle necrosis in late-stage DMD is associated with respiratory insufficiency and CH. Results provide insight into the effects of CH on dystrophin-deficient muscle in vivo.", "type": "Expression profiling by array", "pubmed_id": "20975992", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE15879", "order": "none", "update_date": "Feb 14 2014", "subsets": [ { "dataset_id": "GDS4201", "description": "wild type", "sample_id": [ "GSM398835", "GSM398836", "GSM398837", "GSM398838", "GSM398839", "GSM398840", "GSM398841", "GSM398842" ], "type": "strain", "id": "GDS4201_1" }, { "dataset_id": "GDS4201", "description": "dmDys", "sample_id": [ "GSM398827", "GSM398828", "GSM398829", "GSM398830", "GSM398831", "GSM398832", "GSM398833", "GSM398834" ], "type": "strain", "id": "GDS4201_2" }, { "dataset_id": "GDS4201", "description": "chronic hypobaric hypoxia", "sample_id": [ "GSM398827", "GSM398828", "GSM398829", "GSM398830" ], "type": "stress", "id": "GDS4201_3" }, { "dataset_id": "GDS4201", "description": "normoxia", "sample_id": [ "GSM398831", "GSM398832", "GSM398833", "GSM398834", "GSM398839", "GSM398840", "GSM398841", "GSM398842" ], "type": "stress", "id": "GDS4201_4" }, { "dataset_id": "GDS4201", "description": "normobaric hypoxia", "sample_id": [ "GSM398835", "GSM398836", "GSM398837", "GSM398838" ], "type": "stress", "id": "GDS4201_5" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS4201", "version": 1.0, "instances": "16", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4201.tab", "compression": "gz" } ], [ [ "GDS4202.tab" ], { "title": "Primary chronic lymphocytic leukemia cell response to purine nucleoside analog LMP-420", "description": "Analysis of chronic lymphocytic leukemia (CLL) patient cells cultured with LMP-420 (2 uM) for 24 hr. LMP-420 is an anti-inflammatory agent that induces CLL cell apoptosis in vitro without impairing normal immune cells. Results provide insight into the mechanism of action of LMP-420 in CLL.", "type": "Expression profiling by array", "pubmed_id": "20613784", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE20211", "order": "none", "update_date": "Feb 19 2014", "subsets": [ { "dataset_id": "GDS4202", "description": "control", "sample_id": [ "GSM506907", "GSM506909", "GSM506911", "GSM506913", "GSM506915", "GSM506917", "GSM506919", "GSM506921", "GSM506923", "GSM506925", "GSM506927", "GSM506929", "GSM506931" ], "type": "agent", "id": "GDS4202_1" }, { "dataset_id": "GDS4202", "description": "LMP-420", "sample_id": [ "GSM506908", "GSM506910", "GSM506912", "GSM506914", "GSM506916", "GSM506918", "GSM506920", "GSM506922", "GSM506924", "GSM506926", "GSM506928", "GSM506930", "GSM506932" ], "type": "agent", "id": "GDS4202_2" }, { "dataset_id": "GDS4202", "description": "69-04", "sample_id": [ "GSM506916", "GSM506915" ], "type": "individual", "id": "GDS4202_3" }, { "dataset_id": "GDS4202", "description": "38-11", "sample_id": [ "GSM506910", "GSM506909" ], "type": "individual", "id": "GDS4202_4" }, { "dataset_id": "GDS4202", "description": "379-01", "sample_id": [ "GSM506932", "GSM506931" ], "type": "individual", "id": "GDS4202_5" }, { "dataset_id": "GDS4202", "description": "378-01", "sample_id": [ "GSM506930", "GSM506929" ], "type": "individual", "id": "GDS4202_6" }, { "dataset_id": "GDS4202", "description": "377-01", "sample_id": [ "GSM506928", "GSM506927" ], "type": "individual", "id": "GDS4202_7" }, { "dataset_id": "GDS4202", "description": "361-01", "sample_id": [ "GSM506924", "GSM506923" ], "type": "individual", "id": "GDS4202_8" }, { "dataset_id": "GDS4202", "description": "164-02", "sample_id": [ "GSM506908", "GSM506907" ], "type": "individual", "id": "GDS4202_9" }, { "dataset_id": "GDS4202", "description": "161-04", "sample_id": [ "GSM506926", "GSM506925" ], "type": "individual", "id": "GDS4202_10" }, { "dataset_id": "GDS4202", "description": "149-05", "sample_id": [ "GSM506918", "GSM506917" ], "type": "individual", "id": "GDS4202_11" }, { "dataset_id": "GDS4202", "description": "145-04", "sample_id": [ "GSM506920", "GSM506919" ], "type": "individual", "id": "GDS4202_12" }, { "dataset_id": "GDS4202", "description": "141-08", "sample_id": [ "GSM506914", "GSM506913" ], "type": "individual", "id": "GDS4202_13" }, { "dataset_id": "GDS4202", "description": "119-09", "sample_id": [ "GSM506922", "GSM506921" ], "type": "individual", "id": "GDS4202_14" }, { "dataset_id": "GDS4202", "description": "11-18", "sample_id": [ "GSM506912", "GSM506911" ], "type": "individual", "id": "GDS4202_15" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4202", "version": 1.0, "instances": "26", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4202.tab", "compression": "gz" } ], [ [ "GDS4203.tab" ], { "title": "Dexamethasone effect on glucocorticoid-resistant and -sensitive lymphoblastic leukemia cell lines", "description": "Analysis of glucocorticoid (GC)-resistant and -sensitive derivatives of the CEM-C7H2 T-ALL cell line following 6hrs of dexamethasone treatment. GC drugs are a central component of childhood ALL therapy. Results provide insight into molecular mechanisms underlying the anti-leukemic effects of GC.", "type": "Expression profiling by array", "pubmed_id": "21092265", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE22152", "order": "none", "update_date": "Feb 20 2014", "subsets": [ { "dataset_id": "GDS4203", "description": "GC resistant clone", "sample_id": [ "GSM550942", "GSM550954", "GSM550943", "GSM550955", "GSM550947", "GSM550959", "GSM550946", "GSM550958", "GSM550945", "GSM550957", "GSM550944", "GSM550956" ], "type": "cell line", "id": "GDS4203_1" }, { "dataset_id": "GDS4203", "description": "GC sensitive clone", "sample_id": [ "GSM550951", "GSM550963", "GSM550948", "GSM550960", "GSM550949", "GSM550961", "GSM550953", "GSM550965", "GSM550952", "GSM550964", "GSM550962", "GSM550950" ], "type": "cell line", "id": "GDS4203_2" }, { "dataset_id": "GDS4203", "description": "control", "sample_id": [ "GSM550942", "GSM550943", "GSM550944", "GSM550945", "GSM550946", "GSM550947", "GSM550948", "GSM550949", "GSM550950", "GSM550951", "GSM550952", "GSM550953" ], "type": "agent", "id": "GDS4203_3" }, { "dataset_id": "GDS4203", "description": "dexamethasone", "sample_id": [ "GSM550954", "GSM550955", "GSM550956", "GSM550957", "GSM550958", "GSM550959", "GSM550960", "GSM550961", "GSM550962", "GSM550963", "GSM550964", "GSM550965" ], "type": "agent", "id": "GDS4203_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4203", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4203.tab", "compression": "gz" } ], [ [ "GDS4204.tab" ], { "title": "Growth factor independence 1 knockout effect on LSK hematopoietic stem bone marrow cells", "description": "Analysis of Lin-Sca1+ckit+Flt3- (LSKFlt3-) hematopoietic stem cells (HSC) depleted of growth factor independence 1 (Gfi1). Transcriptional repressor Gfi1 restricts HSC proliferation and is essential to self-renewal. Results provide insight into molecular mechanisms underlying Gfi1 effects in HSCs.", "type": "Expression profiling by array", "pubmed_id": "21732494", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE20282", "order": "none", "update_date": "Feb 20 2014", "subsets": [ { "dataset_id": "GDS4204", "description": "Gfi1 knockout", "sample_id": [ "GSM508528", "GSM508529", "GSM508530" ], "type": "genotype/variation", "id": "GDS4204_1" }, { "dataset_id": "GDS4204", "description": "Gfi1 wild type", "sample_id": [ "GSM508531", "GSM508532", "GSM508533" ], "type": "genotype/variation", "id": "GDS4204_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4204", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4204.tab", "compression": "gz" } ], [ [ "GDS4205.tab" ], { "title": "Transcription factor c-JUN knockout effect on B lymphoid cells", "description": "Analysis of B lymphoid cells depleted of activating protein 1 (AP-1) transcription factor c-JUN. c-JUN is involved in BCR-ABL oncogene-induced transformation and leukemogenesis. Results provide insight into the molecular mechanisms underlying c-JUN modulation of leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "21300982", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE27028", "order": "none", "update_date": "Feb 20 2014", "subsets": [ { "dataset_id": "GDS4205", "description": "c-JUN knock out", "sample_id": [ "GSM665893", "GSM665896", "GSM665897", "GSM665898" ], "type": "genotype/variation", "id": "GDS4205_1" }, { "dataset_id": "GDS4205", "description": "wild type", "sample_id": [ "GSM665894", "GSM665895", "GSM665899", "GSM665900" ], "type": "genotype/variation", "id": "GDS4205_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4205", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4205.tab", "compression": "gz" } ], [ [ "GDS4206.tab" ], { "title": "Pediatric acute leukemia patients with early relapse: white blood cells", "description": "Analysis of WBCs from pediatric B cell precursor (BCP) acute lymphoblastic leukemia (ALL) patients with early, late, or no relapse. For patients with relapsed BCP-ALL, early relapses fare worse than later relapses. Results provide insight into the molecular basis of early relapses in BCP-ALL.", "type": "Expression profiling by array", "pubmed_id": "21295523", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "197", "value_type": "transformed count", "reference_series": "GSE13576", "order": "none", "update_date": "Mar 07 2014", "subsets": [ { "dataset_id": "GDS4206", "description": "early relapse", "sample_id": [ "GSM342319", "GSM342426", "GSM342329", "GSM342441", "GSM342444", "GSM342331", "GSM342451", "GSM342462", "GSM342467", "GSM342334", "GSM342484", "GSM342335", "GSM342491", "GSM342354", "GSM342323", "GSM342371", "GSM342380", "GSM342382", "GSM342325", "GSM342326", "GSM342399", "GSM342402", "GSM342404", "GSM342327", "GSM342408", "GSM342409" ], "type": "disease state", "id": "GDS4206_1" }, { "dataset_id": "GDS4206", "description": "late relapse", "sample_id": [ "GSM342421", "GSM342437", "GSM342454", "GSM342471", "GSM342477", "GSM342495", "GSM342496", "GSM342338", "GSM342347", "GSM342356", "GSM342357", "GSM342322", "GSM342366", "GSM342385" ], "type": "disease state", "id": "GDS4206_2" }, { "dataset_id": "GDS4206", "description": "no relapse", "sample_id": [ "GSM342328", "GSM342418", "GSM342419", "GSM342420", "GSM342422", "GSM342423", "GSM342424", "GSM342425", "GSM342427", "GSM342428", "GSM342429", "GSM342430", "GSM342431", "GSM342432", "GSM342433", "GSM342434", "GSM342435", "GSM342436", "GSM342330", "GSM342438", "GSM342439", "GSM342440", "GSM342442", "GSM342443", "GSM342445", "GSM342446", "GSM342447", "GSM342448", "GSM342449", "GSM342450", "GSM342452", "GSM342453", "GSM342455", "GSM342456", "GSM342457", "GSM342332", "GSM342458", "GSM342459", "GSM342460", "GSM342461", "GSM342463", "GSM342464", "GSM342465", "GSM342466", "GSM342333", "GSM342468", "GSM342469", "GSM342470", "GSM342472", "GSM342473", "GSM342474", "GSM342475", "GSM342476", "GSM342478", "GSM342479", "GSM342480", "GSM342481", "GSM342482", "GSM342483", "GSM342485", "GSM342486", "GSM342487", "GSM342488", "GSM342489", "GSM342490", "GSM342492", "GSM342493", "GSM342494", "GSM342497", "GSM342336", "GSM342498", "GSM342499", "GSM342500", "GSM342501", "GSM342502", "GSM342503", "GSM342504", "GSM342505", "GSM342506", "GSM342507", "GSM342337", "GSM342508", "GSM342509", "GSM342510", "GSM342511", "GSM342512", "GSM342513", "GSM342514", "GSM342515", "GSM342320", "GSM342339", "GSM342340", "GSM342341", "GSM342342", "GSM342343", "GSM342344", "GSM342345", "GSM342346", "GSM342321", "GSM342348", "GSM342349", "GSM342350", "GSM342351", "GSM342352", "GSM342353", "GSM342355", "GSM342358", "GSM342359", "GSM342360", "GSM342361", "GSM342362", "GSM342363", "GSM342364", "GSM342365", "GSM342367", "GSM342368", "GSM342369", "GSM342370", "GSM342372", "GSM342373", "GSM342374", "GSM342375", "GSM342376", "GSM342377", "GSM342324", "GSM342378", "GSM342379", "GSM342381", "GSM342383", "GSM342384", "GSM342386", "GSM342387", "GSM342388", "GSM342389", "GSM342390", "GSM342391", "GSM342392", "GSM342393", "GSM342394", "GSM342395", "GSM342396", "GSM342397", "GSM342398", "GSM342400", "GSM342401", "GSM342403", "GSM342405", "GSM342406", "GSM342407", "GSM342410", "GSM342411", "GSM342412", "GSM342413", "GSM342414", "GSM342415", "GSM342416", "GSM342417" ], "type": "disease state", "id": "GDS4206_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4206", "version": 1.0, "instances": "197", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4206.tab", "compression": "gz" } ], [ [ "GDS4207.tab" ], { "title": "Early differentiating TG2a embryonic stem cells expressing cell surface 5T4 oncofetal glycoprotein", "description": "Analysis of differentiating E14 TG2a ESCs with cell surface expression of 5T4. The upregulation of 5T4 expression is associated with loss of pluripotency in ES cells. Results provide insight into molecular mechanisms underlying the balance between pluripotency and differentiation in ES cells.", "type": "Expression profiling by array", "pubmed_id": "20376365", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE20372", "order": "none", "update_date": "Feb 20 2014", "subsets": [ { "dataset_id": "GDS4207", "description": "medium", "sample_id": [ "GSM510300", "GSM510301", "GSM510302" ], "type": "growth protocol", "id": "GDS4207_1" }, { "dataset_id": "GDS4207", "description": "medium + leukaemia inhibitory factor", "sample_id": [ "GSM510303", "GSM510304", "GSM510305" ], "type": "growth protocol", "id": "GDS4207_2" }, { "dataset_id": "GDS4207", "description": "5T4 positive TG2a cell", "sample_id": [ "GSM510300", "GSM510301", "GSM510302" ], "type": "cell type", "id": "GDS4207_3" }, { "dataset_id": "GDS4207", "description": "5T4 negative TG2a cell", "sample_id": [ "GSM510303", "GSM510304", "GSM510305" ], "type": "cell type", "id": "GDS4207_4" }, { "dataset_id": "GDS4207", "description": "differentiated", "sample_id": [ "GSM510300", "GSM510301", "GSM510302" ], "type": "other", "id": "GDS4207_5" }, { "dataset_id": "GDS4207", "description": "undifferentiated", "sample_id": [ "GSM510303", "GSM510304", "GSM510305" ], "type": "other", "id": "GDS4207_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4207", "version": 1.0, "instances": "6", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4207.tab", "compression": "gz" } ], [ [ "GDS4208.tab" ], { "title": "Truncated CBF beta-SMMHC defective in high-affinity binding with RUNX1 effect on spleen cells", "description": "Analysis of spleen cells from animals expressing a truncated form of CBF beta-SMMHC lacking the RUNX1 high-affinity binding domain (HABD). The type I CBF beta-SMMHC fusion in acute myeloid leukemia (AML) patients lacks HABD. Results provide insight into the molecular pathogenesis of leukemia.", "type": "Expression profiling by array", "pubmed_id": "20478528", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE21155", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4208", "description": "CBFb-SMMHC chimera", "sample_id": [ "GSM529590", "GSM529591", "GSM529592", "GSM529593" ], "type": "genotype/variation", "id": "GDS4208_1" }, { "dataset_id": "GDS4208", "description": "CBFb-SMMHC d179-221 chimera", "sample_id": [ "GSM529594", "GSM529595", "GSM529596", "GSM529597" ], "type": "genotype/variation", "id": "GDS4208_2" }, { "dataset_id": "GDS4208", "description": "N-ethyl-Nnitrosourea treatment", "sample_id": [ "GSM529590", "GSM529591", "GSM529592", "GSM529593" ], "type": "agent", "id": "GDS4208_3" }, { "dataset_id": "GDS4208", "description": "no treatment", "sample_id": [ "GSM529594", "GSM529595", "GSM529596", "GSM529597" ], "type": "agent", "id": "GDS4208_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4208", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4208.tab", "compression": "gz" } ], [ [ "GDS4209.tab" ], { "title": "Anti-CD47 antibody dimer MABL (S-S diabody) effect on leukemia cell line: time course", "description": "Temporal analysis of MOLT-4 leukemia cells treated with 10 ug/mL anti-CD47 dimer MABL (S-S diabody). Cell surface antigen CD47 ligation induces apoptosis in B-chronic lymphocytic leukemia. Results provide insight into the molecular mechanism of CD47-mediated apoptosis in lymphoid malignant cells.", "type": "Expression profiling by array", "pubmed_id": "21401803", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE16494", "order": "ordered", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4209", "description": "0 hour", "sample_id": [ "GSM414472", "GSM414473" ], "type": "time", "id": "GDS4209_1" }, { "dataset_id": "GDS4209", "description": "0.5 hour", "sample_id": [ "GSM414474", "GSM414475" ], "type": "time", "id": "GDS4209_2" }, { "dataset_id": "GDS4209", "description": "1 hour", "sample_id": [ "GSM414476", "GSM414477" ], "type": "time", "id": "GDS4209_3" }, { "dataset_id": "GDS4209", "description": "3 hour", "sample_id": [ "GSM414478", "GSM414479" ], "type": "time", "id": "GDS4209_4" }, { "dataset_id": "GDS4209", "description": "6 hour", "sample_id": [ "GSM414480", "GSM414481" ], "type": "time", "id": "GDS4209_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4209", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4209.tab", "compression": "gz" } ], [ [ "GDS421.tab" ], { "title": "Severe combined immunodeficiency (HG-U95A)", "description": "Investigation of molecular basis for immunodeficiency in severe combined immunodeficiency (SCID) patient. Thymocytes isolated from SCID patient compared with control subject.", "type": "Expression profiling by array", "pubmed_id": "14602880", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE609", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS421", "description": "SCID", "sample_id": [ "GSM9235" ], "type": "disease state", "id": "GDS421_1" }, { "dataset_id": "GDS421", "description": "control", "sample_id": [ "GSM9234" ], "type": "disease state", "id": "GDS421_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS421", "version": 1.0, "instances": "2", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS421.tab", "compression": "gz" } ], [ [ "GDS4210.tab" ], { "title": "Mixed-lineage leukemia MLL translocation subgroups in pediatric acute myeloid leukemia", "description": "Analysis of mostly bone marrow cells from pediatric acute myeloid leukemia (AML) patients belonging to various mixed-lineage leukemia (MLL) translocation subgroups. AML with rearrangements involving the MLL gene, located on chromosome 11q23, are associated with poor clinical outcome.", "type": "Expression profiling by array", "pubmed_id": "21331072", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE19577", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4210", "description": "bone marrow", "sample_id": [ "GSM487932", "GSM487941", "GSM487942", "GSM487943", "GSM487944", "GSM487945", "GSM487946", "GSM487947", "GSM487948", "GSM487949", "GSM487950", "GSM487933", "GSM487951", "GSM487952", "GSM487953", "GSM487954", "GSM487955", "GSM487956", "GSM487957", "GSM487958", "GSM487959", "GSM487960", "GSM487934", "GSM487961", "GSM487962", "GSM487963", "GSM487964", "GSM487965", "GSM487966", "GSM487967", "GSM487968", "GSM487969", "GSM487935", "GSM487972", "GSM487973", "GSM487936", "GSM487937", "GSM487938", "GSM487939", "GSM487940" ], "type": "tissue", "id": "GDS4210_1" }, { "dataset_id": "GDS4210", "description": "peripheral blood", "sample_id": [ "GSM487970", "GSM487971" ], "type": "tissue", "id": "GDS4210_2" }, { "dataset_id": "GDS4210", "description": "MLL/AF10", "sample_id": [ "GSM487932", "GSM487933", "GSM487935", "GSM487939", "GSM487954", "GSM487955", "GSM487961", "GSM487962", "GSM487970", "GSM487971" ], "type": "genotype/variation", "id": "GDS4210_3" }, { "dataset_id": "GDS4210", "description": "MLL/AF9", "sample_id": [ "GSM487934", "GSM487940", "GSM487943", "GSM487944", "GSM487953", "GSM487956", "GSM487957", "GSM487958", "GSM487959", "GSM487960", "GSM487969" ], "type": "genotype/variation", "id": "GDS4210_4" }, { "dataset_id": "GDS4210", "description": "MLL/AF6", "sample_id": [ "GSM487936", "GSM487937", "GSM487938", "GSM487945", "GSM487946", "GSM487947", "GSM487948", "GSM487949", "GSM487950", "GSM487951", "GSM487952" ], "type": "genotype/variation", "id": "GDS4210_5" }, { "dataset_id": "GDS4210", "description": "MLL/ENL", "sample_id": [ "GSM487941", "GSM487964", "GSM487972" ], "type": "genotype/variation", "id": "GDS4210_6" }, { "dataset_id": "GDS4210", "description": "MLL/SEPTIN6", "sample_id": [ "GSM487942", "GSM487966", "GSM487967" ], "type": "genotype/variation", "id": "GDS4210_7" }, { "dataset_id": "GDS4210", "description": "MLL/AF1q", "sample_id": [ "GSM487963", "GSM487968" ], "type": "genotype/variation", "id": "GDS4210_8" }, { "dataset_id": "GDS4210", "description": "MLL/ELL", "sample_id": [ "GSM487965", "GSM487973" ], "type": "genotype/variation", "id": "GDS4210_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4210", "version": 1.0, "instances": "42", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4210.tab", "compression": "gz" } ], [ [ "GDS4211.tab" ], { "title": "Polycomb repressive complex 1 protein Bmi1 transduced CCE embryonic stem cells and differentiated embryoid body samples", "description": "Analysis of Bmi1 transduced CCE embryonic stem cells (ESC) and CCE ESC differentiated by embryoid body assay. Bmi1 is essential for maintaining the pool of adult stem cells. Results provide insight into role of Bmi1 in ESC-derived hematopoietic cell transition from pluripotency to differentiation.", "type": "Expression profiling by array", "pubmed_id": "21545235", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE20958", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4211", "description": "Bmi1 transduced embryoid body", "sample_id": [ "GSM523995", "GSM523996" ], "type": "genotype/variation", "id": "GDS4211_1" }, { "dataset_id": "GDS4211", "description": "empty vector transduced embryoid body control", "sample_id": [ "GSM523997", "GSM523998" ], "type": "genotype/variation", "id": "GDS4211_2" }, { "dataset_id": "GDS4211", "description": "Bmi1 transduced ESC", "sample_id": [ "GSM706697", "GSM706698" ], "type": "genotype/variation", "id": "GDS4211_3" }, { "dataset_id": "GDS4211", "description": "untreated ESC control", "sample_id": [ "GSM706700" ], "type": "genotype/variation", "id": "GDS4211_4" }, { "dataset_id": "GDS4211", "description": "empty vector transduced ESC control", "sample_id": [ "GSM706701" ], "type": "genotype/variation", "id": "GDS4211_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4211", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4211.tab", "compression": "gz" } ], [ [ "GDS4212.tab" ], { "title": "Chronic lymphocytic leukemia with chromosomal deletion 11q: peripheral blood CD19+ cells", "description": "Analysis of CD19+cells from peripheral blood of chronic lymphocytic leukemia (CLL) patients with interstitial deletions on the long arm of chromosome 11 (del11q). Del11q is associated with progressive and aggressive CLL. Results provide insight into the molecular pathogenesis of CLL with del11q.", "type": "Expression profiling by array", "pubmed_id": "21307146", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE26526", "order": "none", "update_date": "Apr 30 2013", "subsets": [ { "dataset_id": "GDS4212", "description": "del11q", "sample_id": [ "GSM652229", "GSM652230", "GSM652231", "GSM652232", "GSM652233", "GSM652234", "GSM652235", "GSM652236", "GSM652237", "GSM652238" ], "type": "genotype/variation", "id": "GDS4212_1" }, { "dataset_id": "GDS4212", "description": "non-del11q", "sample_id": [ "GSM652239", "GSM652240", "GSM652241", "GSM652242", "GSM652243", "GSM652244", "GSM652245", "GSM652246", "GSM652247" ], "type": "genotype/variation", "id": "GDS4212_2" }, { "dataset_id": "GDS4212", "description": "no prior teatment", "sample_id": [ "GSM652247", "GSM652241", "GSM652242", "GSM652243", "GSM652244", "GSM652245", "GSM652232", "GSM652233", "GSM652234", "GSM652235", "GSM652236", "GSM652229", "GSM652230" ], "type": "other", "id": "GDS4212_3" }, { "dataset_id": "GDS4212", "description": "prior treatment", "sample_id": [ "GSM652231", "GSM652237", "GSM652238", "GSM652239", "GSM652240", "GSM652246" ], "type": "other", "id": "GDS4212_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4212", "version": 1.0, "instances": "19", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4212.tab", "compression": "gz" } ], [ [ "GDS4213.tab" ], { "title": "NF-kB inactivation effect on T-ALL1 cell lines", "description": "Analysis of T cell acute lymphoblastic leukemia (T-ALL) cell lines treated with a peptide that inhibits the activity of IKK, an activator of NF-kB. NF-kB pathway is downstream of oncogenic Notch1 in T-ALL. Results provide insight into the molecular basis of Notch-induced NF-kB activation in T-ALL.", "type": "Expression profiling by array", "pubmed_id": "20832754", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE20667", "order": "none", "update_date": "Apr 30 2013", "subsets": [ { "dataset_id": "GDS4213", "description": "JCRB0086 [TALL-1]", "sample_id": [ "GSM518494", "GSM518495", "GSM518496", "GSM518497" ], "type": "cell line", "id": "GDS4213_1" }, { "dataset_id": "GDS4213", "description": "JCRB0033 [CEM]", "sample_id": [ "GSM542393", "GSM542394", "GSM542395", "GSM542396" ], "type": "cell line", "id": "GDS4213_2" }, { "dataset_id": "GDS4213", "description": "KOPT-K", "sample_id": [ "GSM542397", "GSM542398", "GSM542399", "GSM542400" ], "type": "cell line", "id": "GDS4213_3" }, { "dataset_id": "GDS4213", "description": "ACC525 [DND41]", "sample_id": [ "GSM542401", "GSM542402", "GSM542403", "GSM542404" ], "type": "cell line", "id": "GDS4213_4" }, { "dataset_id": "GDS4213", "description": "ACC483 [HPB-ALL]", "sample_id": [ "GSM542405", "GSM542406", "GSM542407", "GSM542408" ], "type": "cell line", "id": "GDS4213_5" }, { "dataset_id": "GDS4213", "description": "NBD inhibitory peptide 100mM", "sample_id": [ "GSM518496", "GSM518497", "GSM542399", "GSM542400", "GSM542407", "GSM542408", "GSM542403", "GSM542404", "GSM542395", "GSM542396" ], "type": "agent", "id": "GDS4213_6" }, { "dataset_id": "GDS4213", "description": "control peptide 100mM", "sample_id": [ "GSM518494", "GSM518495", "GSM542397", "GSM542398", "GSM542405", "GSM542406", "GSM542401", "GSM542402", "GSM542393", "GSM542394" ], "type": "agent", "id": "GDS4213_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4213", "version": 1.0, "instances": "20", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4213.tab", "compression": "gz" } ], [ [ "GDS4216.tab" ], { "title": "Rift Valley Fever virus ZH548 infection effect on BALB/cByJ and MBT/Pas embryonic fibroblasts", "description": "Analysis of fibroblasts from BALB/cByJ or MBT/Pas animals infected with Rift Valley Fever virus (RVFV). RVFV is an arthropod-borne virus that primarily infects ruminants but can infect humans. Results provided insight into the role of genetic variation among hosts and their susceptibility to RVFV.", "type": "Expression profiling by array", "pubmed_id": "20937849", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE18064", "order": "none", "update_date": "Apr 30 2013", "subsets": [ { "dataset_id": "GDS4216", "description": "MBT/Pas", "sample_id": [ "GSM451637", "GSM451636", "GSM451635", "GSM451634", "GSM451633", "GSM451632" ], "type": "strain", "id": "GDS4216_1" }, { "dataset_id": "GDS4216", "description": "BALB/cByJ", "sample_id": [ "GSM451631", "GSM451630", "GSM451629", "GSM451628", "GSM451627", "GSM451626" ], "type": "strain", "id": "GDS4216_2" }, { "dataset_id": "GDS4216", "description": "RVFV infected", "sample_id": [ "GSM451631", "GSM451630", "GSM451629", "GSM451637", "GSM451636", "GSM451635" ], "type": "infection", "id": "GDS4216_3" }, { "dataset_id": "GDS4216", "description": "non-infected", "sample_id": [ "GSM451628", "GSM451627", "GSM451626", "GSM451634", "GSM451633", "GSM451632" ], "type": "infection", "id": "GDS4216_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4216", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4216.tab", "compression": "gz" } ], [ [ "GDS4217.tab" ], { "title": "IL-10+CD8 T cell response to coronavirus infection", "description": "Analysis of IL-10+CD8 and IL-10\u2212CD8 T cells from C57Bl/6 Vert-X animals infected with the neurotropic coronavirus J2.2-V-1. IL-10 is a potent anti-inflammatory cytokine. Results provide insight into the role of IL-10+CD8 T cells in the immune response to coronavirus-induced encephalitis.", "type": "Expression profiling by array", "pubmed_id": "21317392", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE25846", "order": "none", "update_date": "May 01 2013", "subsets": [ { "dataset_id": "GDS4217", "description": "IL-10+ CD8 T cells", "sample_id": [ "GSM634838", "GSM634840", "GSM634842" ], "type": "cell type", "id": "GDS4217_1" }, { "dataset_id": "GDS4217", "description": "IL-10- CD8 T cells", "sample_id": [ "GSM634839", "GSM634841", "GSM634843" ], "type": "cell type", "id": "GDS4217_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4217", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4217.tab", "compression": "gz" } ], [ [ "GDS4218.tab" ], { "title": "Multiple sclerosis: brain lesions", "description": "Analysis of histologically characterized multiple sclerosis (MS) brain lesions. MS is an inflammatory autoimmune disease which progresses to demyelination of the brain and spinal cord. Results provide insight into molecular events during MS pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22734047", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE38010", "order": "none", "update_date": "May 01 2013", "subsets": [ { "dataset_id": "GDS4218", "description": "brain white matter", "sample_id": [ "GSM931812", "GSM931813" ], "type": "tissue", "id": "GDS4218_1" }, { "dataset_id": "GDS4218", "description": "MS brain lesion", "sample_id": [ "GSM931814", "GSM931815", "GSM931816", "GSM931817", "GSM931818" ], "type": "tissue", "id": "GDS4218_2" }, { "dataset_id": "GDS4218", "description": "healthy control", "sample_id": [ "GSM931812", "GSM931813" ], "type": "disease state", "id": "GDS4218_3" }, { "dataset_id": "GDS4218", "description": "MS-early stage-active inflammation", "sample_id": [ "GSM931814" ], "type": "disease state", "id": "GDS4218_4" }, { "dataset_id": "GDS4218", "description": "MS-after demyelination-active inflammation", "sample_id": [ "GSM931815", "GSM931816" ], "type": "disease state", "id": "GDS4218_5" }, { "dataset_id": "GDS4218", "description": "MS-after inflammation-late stage", "sample_id": [ "GSM931817", "GSM931818" ], "type": "disease state", "id": "GDS4218_6" }, { "dataset_id": "GDS4218", "description": "histology: active plaque", "sample_id": [ "GSM931814" ], "type": "other", "id": "GDS4218_7" }, { "dataset_id": "GDS4218", "description": "histology: chronice active plaque", "sample_id": [ "GSM931815", "GSM931816" ], "type": "other", "id": "GDS4218_8" }, { "dataset_id": "GDS4218", "description": "histology: chronic plaque", "sample_id": [ "GSM931817", "GSM931818" ], "type": "other", "id": "GDS4218_9" }, { "dataset_id": "GDS4218", "description": "histology: control", "sample_id": [ "GSM931812", "GSM931813" ], "type": "other", "id": "GDS4218_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4218", "version": 1.0, "instances": "7", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4218.tab", "compression": "gz" } ], [ [ "GDS4219.tab" ], { "title": "Peripheral blood monocyte CD16 + and Cd16- subsets from healthy donors", "description": "Analysis of peripheral blood monocyte (Mo) CD16 (Fc\u03b3RIII) subsets CD16- and CD16+. Increase in circulating CD16+ Mo have been reported in inflammatory pathologies (sepsis/HIV infection). Results provide insight into developmental and functional relationship between CD16+ and CD16- Mo subsets.", "type": "Expression profiling by array", "pubmed_id": "19712453", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE16836", "order": "none", "update_date": "Aug 13 2012", "subsets": [ { "dataset_id": "GDS4219", "description": "CD16- monocyte", "sample_id": [ "GSM422109", "GSM422110", "GSM422111", "GSM422112" ], "type": "cell type", "id": "GDS4219_1" }, { "dataset_id": "GDS4219", "description": "CD16+ monocyte", "sample_id": [ "GSM422113", "GSM422114", "GSM422115", "GSM422116" ], "type": "cell type", "id": "GDS4219_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4219", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4219.tab", "compression": "gz" } ], [ [ "GDS422.tab" ], { "title": "Normal human tissue expression profiling (HG-U95A)", "description": "Analysis of gene expression in a variety of normal tissues. Samples typically composed of a pool of 10-25 individuals. Included as part of the GeneNote project.", "type": "Expression profiling by array", "pubmed_id": "15388519", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE803", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS422", "description": "bone marrow", "sample_id": [ "GSM12634", "GSM12723" ], "type": "tissue", "id": "GDS422_1" }, { "dataset_id": "GDS422", "description": "liver", "sample_id": [ "GSM12639", "GSM12718" ], "type": "tissue", "id": "GDS422_2" }, { "dataset_id": "GDS422", "description": "heart", "sample_id": [ "GSM12644", "GSM12664" ], "type": "tissue", "id": "GDS422_3" }, { "dataset_id": "GDS422", "description": "spleen", "sample_id": [ "GSM12649", "GSM12669" ], "type": "tissue", "id": "GDS422_4" }, { "dataset_id": "GDS422", "description": "lung", "sample_id": [ "GSM12654", "GSM12698" ], "type": "tissue", "id": "GDS422_5" }, { "dataset_id": "GDS422", "description": "kidney", "sample_id": [ "GSM12659", "GSM12728" ], "type": "tissue", "id": "GDS422_6" }, { "dataset_id": "GDS422", "description": "skeletal muscle", "sample_id": [ "GSM12674", "GSM12693" ], "type": "tissue", "id": "GDS422_7" }, { "dataset_id": "GDS422", "description": "thymus", "sample_id": [ "GSM12683", "GSM12713" ], "type": "tissue", "id": "GDS422_8" }, { "dataset_id": "GDS422", "description": "brain", "sample_id": [ "GSM12688", "GSM12708" ], "type": "tissue", "id": "GDS422_9" }, { "dataset_id": "GDS422", "description": "spinal cord", "sample_id": [ "GSM12703", "GSM12753" ], "type": "tissue", "id": "GDS422_10" }, { "dataset_id": "GDS422", "description": "prostate", "sample_id": [ "GSM12733", "GSM12743" ], "type": "tissue", "id": "GDS422_11" }, { "dataset_id": "GDS422", "description": "pancreas", "sample_id": [ "GSM12738", "GSM12748" ], "type": "tissue", "id": "GDS422_12" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS422", "version": 1.0, "instances": "24", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS422.tab", "compression": "gz" } ], [ [ "GDS4220.tab" ], { "title": "HIV-associated nephropathy model: kidney", "description": "Analysis of kidney from TgFVB transgenic mouse model of Human Immunodeficiency Virus-Associated Nephropathy (HIVAN). HIVAN is characterized by rapid progressive kidney dysfunction and prominent tubular damage. Results provide insight into molecular mechanism underlying HIVAN-related tubular disease.", "type": "Expression profiling by array", "pubmed_id": "19628667", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE14221", "order": "none", "update_date": "May 01 2013", "subsets": [ { "dataset_id": "GDS4220", "description": "TgN(pNL43d14)26Lom 26 (TgFVB)", "sample_id": [ "GSM356334", "GSM356335" ], "type": "strain", "id": "GDS4220_1" }, { "dataset_id": "GDS4220", "description": "FVB", "sample_id": [ "GSM356336", "GSM356337" ], "type": "strain", "id": "GDS4220_2" }, { "dataset_id": "GDS4220", "description": "HIV-associated nephropathy", "sample_id": [ "GSM356334", "GSM356335" ], "type": "disease state", "id": "GDS4220_3" }, { "dataset_id": "GDS4220", "description": "wild type control", "sample_id": [ "GSM356336", "GSM356337" ], "type": "disease state", "id": "GDS4220_4" }, { "dataset_id": "GDS4220", "description": "6 week", "sample_id": [ "GSM356334", "GSM356337" ], "type": "time", "id": "GDS4220_5" }, { "dataset_id": "GDS4220", "description": "8 week", "sample_id": [ "GSM356335", "GSM356336" ], "type": "time", "id": "GDS4220_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4220", "version": 1.0, "instances": "4", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4220.tab", "compression": "gz" } ], [ [ "GDS4221.tab" ], { "title": "AIDS-related lymphomas", "description": "Analysis of tumors from HIV+ male patients with AIDS-related lymphomas (ARL). HIV+ individuals have an increased risk of developing an aggressive B-cell Non-Hodgkin Lymphoma relative to HIV- persons. Results identify a signature for ARL subtypes and provide insight into pathogenetic events in ARL.", "type": "Expression profiling by array", "pubmed_id": "20216076", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE17189", "order": "none", "update_date": "May 02 2013", "subsets": [ { "dataset_id": "GDS4221", "description": "colon", "sample_id": [ "GSM429905", "GSM429911" ], "type": "tissue", "id": "GDS4221_1" }, { "dataset_id": "GDS4221", "description": "hilar", "sample_id": [ "GSM429912" ], "type": "tissue", "id": "GDS4221_2" }, { "dataset_id": "GDS4221", "description": "hilar/lung", "sample_id": [ "GSM429909" ], "type": "tissue", "id": "GDS4221_3" }, { "dataset_id": "GDS4221", "description": "jejunum", "sample_id": [ "GSM429908" ], "type": "tissue", "id": "GDS4221_4" }, { "dataset_id": "GDS4221", "description": "lymph node", "sample_id": [ "GSM429903", "GSM429907", "GSM429910", "GSM429914", "GSM429917", "GSM429918" ], "type": "tissue", "id": "GDS4221_5" }, { "dataset_id": "GDS4221", "description": "lung", "sample_id": [ "GSM429904" ], "type": "tissue", "id": "GDS4221_6" }, { "dataset_id": "GDS4221", "description": "mediastinal/atrial", "sample_id": [ "GSM429915" ], "type": "tissue", "id": "GDS4221_7" }, { "dataset_id": "GDS4221", "description": "neck", "sample_id": [ "GSM429916" ], "type": "tissue", "id": "GDS4221_8" }, { "dataset_id": "GDS4221", "description": "pleural fluid", "sample_id": [ "GSM429913" ], "type": "tissue", "id": "GDS4221_9" }, { "dataset_id": "GDS4221", "description": "small bowel", "sample_id": [ "GSM429906" ], "type": "tissue", "id": "GDS4221_10" }, { "dataset_id": "GDS4221", "description": "spinal/epidural", "sample_id": [ "GSM429919" ], "type": "tissue", "id": "GDS4221_11" }, { "dataset_id": "GDS4221", "description": "pathology diagnosis: DLBCL", "sample_id": [ "GSM429903", "GSM429904", "GSM429907", "GSM429909", "GSM429911", "GSM429912", "GSM429915" ], "type": "disease state", "id": "GDS4221_12" }, { "dataset_id": "GDS4221", "description": "pathology diagnosis: DLBCL (PC)", "sample_id": [ "GSM429905", "GSM429908", "GSM429917", "GSM429918", "GSM429919", "GSM429914" ], "type": "disease state", "id": "GDS4221_13" }, { "dataset_id": "GDS4221", "description": "pathology diagnosis: High Grade, UC", "sample_id": [ "GSM429906", "GSM429910", "GSM429913", "GSM429916" ], "type": "disease state", "id": "GDS4221_14" }, { "dataset_id": "GDS4221", "description": "molecular diagnosis: BL", "sample_id": [ "GSM429903", "GSM429907", "GSM429910", "GSM429915" ], "type": "other", "id": "GDS4221_15" }, { "dataset_id": "GDS4221", "description": "molecular diagnosis: GCB DLBCL", "sample_id": [ "GSM429904", "GSM429911", "GSM429916" ], "type": "other", "id": "GDS4221_16" }, { "dataset_id": "GDS4221", "description": "molecular diagnosis: DLBCL_NC", "sample_id": [ "GSM429905", "GSM429906", "GSM429909", "GSM429912" ], "type": "other", "id": "GDS4221_17" }, { "dataset_id": "GDS4221", "description": "molecular diagnosis: ABC DLBCL", "sample_id": [ "GSM429908", "GSM429914", "GSM429913", "GSM429917", "GSM429918", "GSM429919" ], "type": "other", "id": "GDS4221_18" }, { "dataset_id": "GDS4221", "description": "EBV status: negative", "sample_id": [ "GSM429903", "GSM429904", "GSM429906", "GSM429907", "GSM429913", "GSM429915", "GSM429916" ], "type": "genotype/variation", "id": "GDS4221_19" }, { "dataset_id": "GDS4221", "description": "EBV status: positive", "sample_id": [ "GSM429905", "GSM429908", "GSM429909", "GSM429910", "GSM429911", "GSM429912", "GSM429914", "GSM429917", "GSM429918", "GSM429919" ], "type": "genotype/variation", "id": "GDS4221_20" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4221", "version": 1.0, "instances": "17", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4221.tab", "compression": "gz" } ], [ [ "GDS4222.tab" ], { "title": "Classic Hodgkins lymphoma diagnostic lymph-node biopsies", "description": "Analysis of diagnostic lymph-node biopsies from classic Hodgkins lymphoma HIV- patients before ABVD chemotherapy. Results identify gene expression signatures that correlate with treatment outcomes.", "type": "Expression profiling by array", "pubmed_id": "20220182", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "130", "value_type": "transformed count", "reference_series": "GSE17920", "order": "none", "update_date": "May 02 2013", "subsets": [ { "dataset_id": "GDS4222", "description": "female", "sample_id": [ "GSM447615", "GSM447618", "GSM447620", "GSM447621", "GSM447623", "GSM447627", "GSM447629", "GSM447630", "GSM447636", "GSM447637", "GSM447639", "GSM447642", "GSM447648", "GSM447649", "GSM447650", "GSM447651", "GSM447652", "GSM447653", "GSM447654", "GSM447655", "GSM447656", "GSM447657", "GSM447658", "GSM447660", "GSM447661", "GSM447663", "GSM447664", "GSM447669", "GSM447671", "GSM447673", "GSM447674", "GSM447675", "GSM447676", "GSM447678", "GSM447679", "GSM447680", "GSM447681", "GSM447686", "GSM447691", "GSM447694", "GSM447698", "GSM447699", "GSM447704", "GSM447706", "GSM447708", "GSM447712", "GSM447713", "GSM447719", "GSM447720", "GSM447721", "GSM447722", "GSM447723", "GSM447726", "GSM447733", "GSM447735", "GSM447736", "GSM447737" ], "type": "gender", "id": "GDS4222_1" }, { "dataset_id": "GDS4222", "description": "male", "sample_id": [ "GSM447610", "GSM447611", "GSM447612", "GSM447613", "GSM447614", "GSM447616", "GSM447617", "GSM447619", "GSM447622", "GSM447624", "GSM447625", "GSM447626", "GSM447628", "GSM447631", "GSM447632", "GSM447633", "GSM447634", "GSM447635", "GSM447638", "GSM447640", "GSM447641", "GSM447643", "GSM447644", "GSM447645", "GSM447646", "GSM447647", "GSM447659", "GSM447662", "GSM447665", "GSM447666", "GSM447667", "GSM447668", "GSM447670", "GSM447672", "GSM447677", "GSM447682", "GSM447683", "GSM447684", "GSM447685", "GSM447687", "GSM447688", "GSM447689", "GSM447690", "GSM447692", "GSM447693", "GSM447695", "GSM447696", "GSM447697", "GSM447700", "GSM447701", "GSM447702", "GSM447703", "GSM447705", "GSM447707", "GSM447709", "GSM447710", "GSM447711", "GSM447714", "GSM447715", "GSM447716", "GSM447717", "GSM447718", "GSM447724", "GSM447725", "GSM447727", "GSM447728", "GSM447729", "GSM447730", "GSM447731", "GSM447732", "GSM447734", "GSM447738", "GSM447739" ], "type": "gender", "id": "GDS4222_2" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 0", "sample_id": [ "GSM447671", "GSM447694" ], "type": "individual", "id": "GDS4222_3" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 1", "sample_id": [ "GSM447618", "GSM447691", "GSM447733", "GSM447620", "GSM447627", "GSM447630", "GSM447642", "GSM447649", "GSM447654", "GSM447655", "GSM447669", "GSM447676", "GSM447678", "GSM447681", "GSM447698", "GSM447713", "GSM447722", "GSM447726", "GSM447735", "GSM447737", "GSM447657" ], "type": "individual", "id": "GDS4222_4" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 1.2", "sample_id": [ "GSM447674", "GSM447636", "GSM447723" ], "type": "individual", "id": "GDS4222_5" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 2", "sample_id": [ "GSM447612", "GSM447665", "GSM447677", "GSM447699", "GSM447708", "GSM447721", "GSM447613", "GSM447659", "GSM447662", "GSM447666", "GSM447668", "GSM447682", "GSM447683", "GSM447688", "GSM447702", "GSM447709", "GSM447711", "GSM447715", "GSM447621", "GSM447623", "GSM447650", "GSM447651", "GSM447653", "GSM447658", "GSM447675", "GSM447680", "GSM447686", "GSM447736", "GSM447693", "GSM447629", "GSM447648", "GSM447660", "GSM447661", "GSM447663", "GSM447704", "GSM447720", "GSM447652" ], "type": "individual", "id": "GDS4222_6" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 2.3", "sample_id": [ "GSM447611", "GSM447672", "GSM447703", "GSM447727", "GSM447638", "GSM447670", "GSM447700", "GSM447738", "GSM447739", "GSM447617", "GSM447619", "GSM447628", "GSM447632", "GSM447643" ], "type": "individual", "id": "GDS4222_7" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 3", "sample_id": [ "GSM447724", "GSM447728", "GSM447610", "GSM447622", "GSM447633", "GSM447634", "GSM447667", "GSM447687", "GSM447695", "GSM447696", "GSM447697", "GSM447714", "GSM447717", "GSM447725", "GSM447729", "GSM447679", "GSM447712", "GSM447644", "GSM447710", "GSM447614", "GSM447664" ], "type": "individual", "id": "GDS4222_8" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 3.5", "sample_id": [ "GSM447685", "GSM447690", "GSM447730", "GSM447646", "GSM447689", "GSM447635", "GSM447641" ], "type": "individual", "id": "GDS4222_9" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 4", "sample_id": [ "GSM447716", "GSM447718", "GSM447616", "GSM447626", "GSM447640", "GSM447734", "GSM447637", "GSM447615", "GSM447639", "GSM447656", "GSM447673" ], "type": "individual", "id": "GDS4222_10" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 4.7", "sample_id": [ "GSM447692", "GSM447647", "GSM447624", "GSM447625", "GSM447707" ], "type": "individual", "id": "GDS4222_11" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 5", "sample_id": [ "GSM447732", "GSM447684", "GSM447731", "GSM447705", "GSM447719" ], "type": "individual", "id": "GDS4222_12" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 6", "sample_id": [ "GSM447631", "GSM447701", "GSM447706" ], "type": "individual", "id": "GDS4222_13" }, { "dataset_id": "GDS4222", "description": "international prognostic score: 7", "sample_id": [ "GSM447645" ], "type": "individual", "id": "GDS4222_14" }, { "dataset_id": "GDS4222", "description": "disease stage: 1", "sample_id": [ "GSM447611", "GSM447612", "GSM447665", "GSM447672", "GSM447677", "GSM447703", "GSM447724", "GSM447727", "GSM447728", "GSM447618", "GSM447674", "GSM447691", "GSM447699", "GSM447708", "GSM447721", "GSM447733" ], "type": "disease state", "id": "GDS4222_15" }, { "dataset_id": "GDS4222", "description": "disease stage: 2", "sample_id": [ "GSM447610", "GSM447613", "GSM447622", "GSM447633", "GSM447634", "GSM447638", "GSM447659", "GSM447662", "GSM447666", "GSM447667", "GSM447668", "GSM447670", "GSM447682", "GSM447683", "GSM447685", "GSM447687", "GSM447688", "GSM447690", "GSM447692", "GSM447695", "GSM447696", "GSM447697", "GSM447700", "GSM447702", "GSM447709", "GSM447711", "GSM447714", "GSM447715", "GSM447716", "GSM447717", "GSM447718", "GSM447725", "GSM447729", "GSM447730", "GSM447732", "GSM447738", "GSM447739", "GSM447620", "GSM447621", "GSM447623", "GSM447627", "GSM447630", "GSM447642", "GSM447649", "GSM447650", "GSM447651", "GSM447653", "GSM447654", "GSM447655", "GSM447658", "GSM447669", "GSM447671", "GSM447675", "GSM447676", "GSM447678", "GSM447679", "GSM447680", "GSM447681", "GSM447686", "GSM447698", "GSM447712", "GSM447713", "GSM447722", "GSM447726", "GSM447735", "GSM447736", "GSM447737" ], "type": "disease state", "id": "GDS4222_16" }, { "dataset_id": "GDS4222", "description": "disease stage: 3", "sample_id": [ "GSM447616", "GSM447617", "GSM447619", "GSM447626", "GSM447628", "GSM447632", "GSM447640", "GSM447643", "GSM447644", "GSM447646", "GSM447647", "GSM447684", "GSM447689", "GSM447693", "GSM447710", "GSM447731", "GSM447734", "GSM447629", "GSM447636", "GSM447637", "GSM447648", "GSM447657", "GSM447660", "GSM447661", "GSM447663", "GSM447694", "GSM447704", "GSM447720", "GSM447723" ], "type": "disease state", "id": "GDS4222_17" }, { "dataset_id": "GDS4222", "description": "disease stage: 4", "sample_id": [ "GSM447614", "GSM447624", "GSM447625", "GSM447631", "GSM447635", "GSM447641", "GSM447645", "GSM447701", "GSM447705", "GSM447707", "GSM447615", "GSM447639", "GSM447652", "GSM447656", "GSM447664", "GSM447673", "GSM447706", "GSM447719" ], "type": "disease state", "id": "GDS4222_18" }, { "dataset_id": "GDS4222", "description": "relapse type: LATE", "sample_id": [ "GSM447618", "GSM447620", "GSM447627", "GSM447636", "GSM447612", "GSM447623", "GSM447629", "GSM447611", "GSM447638", "GSM447617", "GSM447628", "GSM447632", "GSM447610", "GSM447633", "GSM447634", "GSM447614", "GSM447635", "GSM447637", "GSM447639" ], "type": "other", "id": "GDS4222_19" }, { "dataset_id": "GDS4222", "description": "relapse type: EARLY", "sample_id": [ "GSM447630", "GSM447613", "GSM447619", "GSM447622", "GSM447616", "GSM447626", "GSM447615", "GSM447624", "GSM447631" ], "type": "other", "id": "GDS4222_20" }, { "dataset_id": "GDS4222", "description": "relapse type: REFRACTORY", "sample_id": [ "GSM447642", "GSM447621", "GSM447643", "GSM447644", "GSM447646", "GSM447641", "GSM447640", "GSM447647", "GSM447625", "GSM447645" ], "type": "other", "id": "GDS4222_21" }, { "dataset_id": "GDS4222", "description": "relapse type: NA", "sample_id": [ "GSM447671", "GSM447694", "GSM447691", "GSM447733", "GSM447649", "GSM447654", "GSM447655", "GSM447669", "GSM447676", "GSM447678", "GSM447681", "GSM447698", "GSM447713", "GSM447722", "GSM447726", "GSM447735", "GSM447737", "GSM447657", "GSM447674", "GSM447723", "GSM447665", "GSM447677", "GSM447699", "GSM447708", "GSM447721", "GSM447659", "GSM447662", "GSM447666", "GSM447668", "GSM447682", "GSM447683", "GSM447688", "GSM447702", "GSM447709", "GSM447711", "GSM447715", "GSM447650", "GSM447651", "GSM447653", "GSM447658", "GSM447675", "GSM447680", "GSM447686", "GSM447736", "GSM447693", "GSM447648", "GSM447660", "GSM447661", "GSM447663", "GSM447704", "GSM447720", "GSM447652", "GSM447672", "GSM447703", "GSM447727", "GSM447670", "GSM447700", "GSM447738", "GSM447739", "GSM447724", "GSM447728", "GSM447667", "GSM447687", "GSM447695", "GSM447696", "GSM447697", "GSM447714", "GSM447717", "GSM447725", "GSM447729", "GSM447679", "GSM447712", "GSM447710", "GSM447664", "GSM447685", "GSM447690", "GSM447730", "GSM447689", "GSM447716", "GSM447718", "GSM447734", "GSM447656", "GSM447673", "GSM447692", "GSM447707", "GSM447732", "GSM447684", "GSM447731", "GSM447705", "GSM447719", "GSM447701", "GSM447706" ], "type": "other", "id": "GDS4222_22" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4222", "version": 1.0, "instances": "130", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4222.tab", "compression": "gz" } ], [ [ "GDS4224.tab" ], { "title": "West Nile virus infection effect on retinal pigment epithelium cells", "description": "Analysis of primary retinal pigment epithelial (RPE) cells and RPE ARPE-19 cells infected with West Nile virus (WNV). WNV infection can lead to ocular pathologies such as chorioretinitis, uveitis, or optic neuritis. Results provide insight into the molecular response of RPE cells to WNV infection.", "type": "Expression profiling by array", "pubmed_id": "22509103", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE30719", "order": "none", "update_date": "May 02 2013", "subsets": [ { "dataset_id": "GDS4224", "description": "ARPE19 cell line", "sample_id": [ "GSM762069", "GSM762068" ], "type": "cell type", "id": "GDS4224_1" }, { "dataset_id": "GDS4224", "description": "primary RPE", "sample_id": [ "GSM762061", "GSM762063", "GSM762065", "GSM762067", "GSM762060", "GSM762062", "GSM762064", "GSM762066" ], "type": "cell type", "id": "GDS4224_2" }, { "dataset_id": "GDS4224", "description": "uninfected", "sample_id": [ "GSM762068", "GSM762060", "GSM762062", "GSM762064", "GSM762066" ], "type": "infection", "id": "GDS4224_3" }, { "dataset_id": "GDS4224", "description": "WNV infection", "sample_id": [ "GSM762069", "GSM762061", "GSM762063", "GSM762065", "GSM762067" ], "type": "infection", "id": "GDS4224_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4224", "version": 1.0, "instances": "10", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4224.tab", "compression": "gz" } ], [ [ "GDS4225.tab" ], { "title": "Monocyte-derived dendritic cells co-infected with HIV-GFP(G) and SIV-VLP(G)", "description": "Analysis of MDDCs exposed to GFP-encoding HIV-1 pseudotyped with vesicular stomatitis virus protein G (VSV-G) [HIV-GFP(G)], VSV-G-pseudotyped SIVmac239 virus-like particles [SIV-VLP(G)], or both. Results provide insight into molecular mechanisms udnerlying DC activation after HIV-1 infection.", "type": "Expression profiling by array", "pubmed_id": "20829794", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE22589", "order": "none", "update_date": "Apr 26 2013", "subsets": [ { "dataset_id": "GDS4225", "description": "uninfected control", "sample_id": [ "GSM560538", "GSM560539" ], "type": "infection", "id": "GDS4225_1" }, { "dataset_id": "GDS4225", "description": "HIV-GFP(G)", "sample_id": [ "GSM560540", "GSM560541" ], "type": "infection", "id": "GDS4225_2" }, { "dataset_id": "GDS4225", "description": "SIV-VLP(G)", "sample_id": [ "GSM560542", "GSM560543" ], "type": "infection", "id": "GDS4225_3" }, { "dataset_id": "GDS4225", "description": "HIV-GFP(G) + SIV-VLP(G)", "sample_id": [ "GSM560544", "GSM560545" ], "type": "infection", "id": "GDS4225_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4225", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4225.tab", "compression": "gz" } ], [ [ "GDS4226.tab" ], { "title": "Programmed Death-1-expressing CD8 T cells in healthy adult peripheral blood", "description": "Analysis of PD-1hi, PD-1lo, and naive CD8+CD3+ T cells FACS-sorted from peripheral blood of healthy adults. PD-1, a member of the CD28 family of immune modulators, is highly expressed on chronic virus-specific CD8 T cells. Results provide insight into PD-1-expressing CD8 T cells in healthy adults.", "type": "Expression profiling by array", "pubmed_id": "21383243", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE26495", "order": "none", "update_date": "Apr 26 2013", "subsets": [ { "dataset_id": "GDS4226", "description": "Naive CD8+CD3+ T cells", "sample_id": [ "GSM651411", "GSM651412", "GSM651413", "GSM651415" ], "type": "cell type", "id": "GDS4226_1" }, { "dataset_id": "GDS4226", "description": "PD-1 high CD8+CD3+ T cells", "sample_id": [ "GSM651416", "GSM651417", "GSM651418", "GSM651419", "GSM651420", "GSM651422" ], "type": "cell type", "id": "GDS4226_2" }, { "dataset_id": "GDS4226", "description": "PD-1 low CD8+CD3+ T cells", "sample_id": [ "GSM651423", "GSM651425", "GSM651426", "GSM651427", "GSM651429", "GSM651430" ], "type": "cell type", "id": "GDS4226_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4226", "version": 1.0, "instances": "16", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4226.tab", "compression": "gz" } ], [ [ "GDS4227.tab" ], { "title": "Highly Active Antiretroviral Therapy (HAART) interruption effect on HIV patients: jejunal mucosa", "description": "Analysis of gut biopsies from HIV+ patients following interruption of HAART. Gut-associated lymphoid tissue (GALT) is a critical host-pathogen interaction site in HIV infection. Results provide insight into molecular basis of host response to viral rebound in GALT following HAART interruption.", "type": "Expression profiling by array", "pubmed_id": "21345945", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE28177", "order": "none", "update_date": "Apr 26 2013", "subsets": [ { "dataset_id": "GDS4227", "description": "HIV-", "sample_id": [ "GSM697651", "GSM697652", "GSM697653" ], "type": "disease state", "id": "GDS4227_1" }, { "dataset_id": "GDS4227", "description": "HIV+_interrupted HAART", "sample_id": [ "GSM697654", "GSM697655", "GSM697656" ], "type": "disease state", "id": "GDS4227_2" }, { "dataset_id": "GDS4227", "description": "65", "sample_id": [ "GSM697651" ], "type": "individual", "id": "GDS4227_3" }, { "dataset_id": "GDS4227", "description": "151", "sample_id": [ "GSM697652" ], "type": "individual", "id": "GDS4227_4" }, { "dataset_id": "GDS4227", "description": "130", "sample_id": [ "GSM697653" ], "type": "individual", "id": "GDS4227_5" }, { "dataset_id": "GDS4227", "description": "116", "sample_id": [ "GSM697654" ], "type": "individual", "id": "GDS4227_6" }, { "dataset_id": "GDS4227", "description": "134", "sample_id": [ "GSM697655" ], "type": "individual", "id": "GDS4227_7" }, { "dataset_id": "GDS4227", "description": "140", "sample_id": [ "GSM697656" ], "type": "individual", "id": "GDS4227_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4227", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4227.tab", "compression": "gz" } ], [ [ "GDS4228.tab" ], { "title": "HIV infection and Antiretroviral Therapy effects on mitochondria in various tissues", "description": "Analysis of PBMCs, muscle, adipose tissue from human immunodeficiency virus (HIV)-positive adults receiving nucleoside reverse transcriptase inhibitor (NRTI)-based ART. Results provide insight into molecular mechanisms underlying the divergent effects of HIV infection and ART on mitochondria in fat.", "type": "Expression profiling by array", "pubmed_id": "22476717", "platform": "GPL9392", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "4825", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "166", "value_type": "transformed count", "reference_series": "GSE30310", "order": "none", "update_date": "Apr 26 2013", "subsets": [ { "dataset_id": "GDS4228", "description": "PBMC", "sample_id": [ "GSM751343", "GSM751342", "GSM751341", "GSM751358", "GSM751359", "GSM751340", "GSM751339", "GSM751357", "GSM751356", "GSM751338", "GSM751337", "GSM751336", "GSM751335", "GSM751334", "GSM751333", "GSM751332", "GSM751331", "GSM751330", "GSM751329", "GSM751318", "GSM751328", "GSM751327", "GSM751326", "GSM751325", "GSM751324", "GSM751323", "GSM751322", "GSM751321", "GSM751320", "GSM751319", "GSM751308", "GSM751317", "GSM751316", "GSM751315", "GSM751314", "GSM751313", "GSM751312", "GSM751311", "GSM751310", "GSM751309", "GSM751299", "GSM751307", "GSM751306", "GSM751305", "GSM751304", "GSM751303", "GSM751302", "GSM751301", "GSM751354", "GSM751355", "GSM751300", "GSM751293", "GSM751298", "GSM751352", "GSM751353", "GSM751297", "GSM751296", "GSM751350", "GSM751351", "GSM751295", "GSM751348", "GSM751349", "GSM751346", "GSM751347", "GSM751294", "GSM751345", "GSM751344" ], "type": "tissue", "id": "GDS4228_1" }, { "dataset_id": "GDS4228", "description": "muscle", "sample_id": [ "GSM751415", "GSM751414", "GSM751413", "GSM751410", "GSM751412", "GSM751411", "GSM751422", "GSM751421", "GSM751409", "GSM751408", "GSM751407", "GSM751406", "GSM751405", "GSM751404", "GSM751403", "GSM751402", "GSM751401", "GSM751391", "GSM751420", "GSM751400", "GSM751399", "GSM751398", "GSM751397", "GSM751396", "GSM751395", "GSM751394", "GSM751393", "GSM751392", "GSM751380", "GSM751390", "GSM751389", "GSM751388", "GSM751387", "GSM751386", "GSM751385", "GSM751384", "GSM751383", "GSM751382", "GSM751381", "GSM751369", "GSM751379", "GSM751378", "GSM751377", "GSM751376", "GSM751375", "GSM751374", "GSM751373", "GSM751372", "GSM751371", "GSM751370", "GSM751360", "GSM751368", "GSM751367", "GSM751366", "GSM751365", "GSM751419", "GSM751418", "GSM751364", "GSM751363", "GSM751362", "GSM751361", "GSM751417", "GSM751416" ], "type": "tissue", "id": "GDS4228_2" }, { "dataset_id": "GDS4228", "description": "adipose", "sample_id": [ "GSM751452", "GSM751451", "GSM751450", "GSM751448", "GSM751449", "GSM751440", "GSM751458", "GSM751457", "GSM751456", "GSM751455", "GSM751454", "GSM751453", "GSM751447", "GSM751446", "GSM751445", "GSM751444", "GSM751443", "GSM751442", "GSM751441", "GSM751437", "GSM751439", "GSM751438", "GSM751436", "GSM751431", "GSM751435", "GSM751434", "GSM751433", "GSM751432", "GSM751430", "GSM751429", "GSM751428", "GSM751427", "GSM751426", "GSM751425", "GSM751424", "GSM751423" ], "type": "tissue", "id": "GDS4228_3" }, { "dataset_id": "GDS4228", "description": "HIV-negative", "sample_id": [ "GSM751298", "GSM751304", "GSM751305", "GSM751307", "GSM751310", "GSM751314", "GSM751316", "GSM751318", "GSM751342", "GSM751346", "GSM751347", "GSM751348", "GSM751349", "GSM751352", "GSM751353", "GSM751354", "GSM751355", "GSM751358", "GSM751359", "GSM751425", "GSM751429", "GSM751430", "GSM751433", "GSM751437", "GSM751448", "GSM751451", "GSM751362", "GSM751363", "GSM751367", "GSM751368", "GSM751371", "GSM751375", "GSM751376", "GSM751378", "GSM751379", "GSM751382", "GSM751386", "GSM751388", "GSM751391", "GSM751410", "GSM751414" ], "type": "disease state", "id": "GDS4228_4" }, { "dataset_id": "GDS4228", "description": "HIV-positive", "sample_id": [ "GSM751294", "GSM751296", "GSM751297", "GSM751299", "GSM751300", "GSM751301", "GSM751302", "GSM751303", "GSM751306", "GSM751308", "GSM751309", "GSM751311", "GSM751312", "GSM751313", "GSM751315", "GSM751317", "GSM751320", "GSM751321", "GSM751322", "GSM751324", "GSM751325", "GSM751332", "GSM751334", "GSM751339", "GSM751341", "GSM751343", "GSM751344", "GSM751345", "GSM751356", "GSM751357", "GSM751423", "GSM751424", "GSM751428", "GSM751431", "GSM751432", "GSM751434", "GSM751435", "GSM751436", "GSM751440", "GSM751444", "GSM751446", "GSM751449", "GSM751450", "GSM751452", "GSM751361", "GSM751365", "GSM751366", "GSM751369", "GSM751370", "GSM751372", "GSM751373", "GSM751374", "GSM751377", "GSM751380", "GSM751381", "GSM751383", "GSM751384", "GSM751385", "GSM751387", "GSM751389", "GSM751393", "GSM751394", "GSM751395", "GSM751397", "GSM751398", "GSM751404", "GSM751406", "GSM751411", "GSM751413", "GSM751415", "GSM751416", "GSM751417", "GSM751421", "GSM751422", "GSM751293", "GSM751295", "GSM751319", "GSM751323", "GSM751326", "GSM751327", "GSM751328", "GSM751329", "GSM751330", "GSM751331", "GSM751333", "GSM751335", "GSM751336", "GSM751337", "GSM751338", "GSM751340", "GSM751350", "GSM751351", "GSM751426", "GSM751427", "GSM751438", "GSM751439", "GSM751441", "GSM751442", "GSM751443", "GSM751445", "GSM751447", "GSM751453", "GSM751454", "GSM751455", "GSM751456", "GSM751457", "GSM751458", "GSM751360", "GSM751364", "GSM751390", "GSM751392", "GSM751396", "GSM751399", "GSM751400", "GSM751401", "GSM751402", "GSM751403", "GSM751405", "GSM751407", "GSM751408", "GSM751409", "GSM751412", "GSM751418", "GSM751419", "GSM751420" ], "type": "disease state", "id": "GDS4228_5" }, { "dataset_id": "GDS4228", "description": "NA", "sample_id": [ "GSM751298", "GSM751304", "GSM751305", "GSM751307", "GSM751310", "GSM751314", "GSM751316", "GSM751318", "GSM751342", "GSM751346", "GSM751347", "GSM751348", "GSM751349", "GSM751352", "GSM751353", "GSM751354", "GSM751355", "GSM751358", "GSM751359", "GSM751425", "GSM751429", "GSM751430", "GSM751433", "GSM751437", "GSM751448", "GSM751451", "GSM751362", "GSM751363", "GSM751367", "GSM751368", "GSM751371", "GSM751375", "GSM751376", "GSM751378", "GSM751379", "GSM751382", "GSM751386", "GSM751388", "GSM751391", "GSM751410", "GSM751414" ], "type": "agent", "id": "GDS4228_6" }, { "dataset_id": "GDS4228", "description": "ART", "sample_id": [ "GSM751294", "GSM751296", "GSM751297", "GSM751299", "GSM751300", "GSM751301", "GSM751302", "GSM751303", "GSM751306", "GSM751308", "GSM751309", "GSM751311", "GSM751312", "GSM751313", "GSM751315", "GSM751317", "GSM751320", "GSM751321", "GSM751322", "GSM751324", "GSM751325", "GSM751332", "GSM751334", "GSM751339", "GSM751341", "GSM751343", "GSM751344", "GSM751345", "GSM751356", "GSM751357", "GSM751423", "GSM751424", "GSM751428", "GSM751431", "GSM751432", "GSM751434", "GSM751435", "GSM751436", "GSM751440", "GSM751444", "GSM751446", "GSM751449", "GSM751450", "GSM751452", "GSM751361", "GSM751365", "GSM751366", "GSM751369", "GSM751370", "GSM751372", "GSM751373", "GSM751374", "GSM751377", "GSM751380", "GSM751381", "GSM751383", "GSM751384", "GSM751385", "GSM751387", "GSM751389", "GSM751393", "GSM751394", "GSM751395", "GSM751397", "GSM751398", "GSM751404", "GSM751406", "GSM751411", "GSM751413", "GSM751415", "GSM751416", "GSM751417", "GSM751421", "GSM751422" ], "type": "agent", "id": "GDS4228_7" }, { "dataset_id": "GDS4228", "description": "No ART", "sample_id": [ "GSM751293", "GSM751295", "GSM751319", "GSM751323", "GSM751326", "GSM751327", "GSM751328", "GSM751329", "GSM751330", "GSM751331", "GSM751333", "GSM751335", "GSM751336", "GSM751337", "GSM751338", "GSM751340", "GSM751350", "GSM751351", "GSM751426", "GSM751427", "GSM751438", "GSM751439", "GSM751441", "GSM751442", "GSM751443", "GSM751445", "GSM751447", "GSM751453", "GSM751454", "GSM751455", "GSM751456", "GSM751457", "GSM751458", "GSM751360", "GSM751364", "GSM751390", "GSM751392", "GSM751396", "GSM751399", "GSM751400", "GSM751401", "GSM751402", "GSM751403", "GSM751405", "GSM751407", "GSM751408", "GSM751409", "GSM751412", "GSM751418", "GSM751419", "GSM751420" ], "type": "agent", "id": "GDS4228_8" } ], "taxid": "9606", "genes": 3778, "aggregation_function": "mean", "name": "GDS4228", "version": 1.0, "instances": "166", "variables": 3782, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4228.tab", "compression": "gz" } ], [ [ "GDS4229.tab" ], { "title": "Model of HIV-associated pulmonary arterial hypertension: right superior lobe of lung", "description": "Analysis of lung from 3 month old, human immunodeficiency virus (HIV)-transgenic F344 males. The HIV-transgenics display pulmonary hypertension and pulmonary artery remodeling. Results provide insight into the molecular mechanisms underlying HIV-PAH onset and progression.", "type": "Expression profiling by array", "pubmed_id": "21685241", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE27393", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4229", "description": "HIV-transgenic", "sample_id": [ "GSM677390", "GSM677391", "GSM677392" ], "type": "genotype/variation", "id": "GDS4229_1" }, { "dataset_id": "GDS4229", "description": "control", "sample_id": [ "GSM677393", "GSM677394", "GSM677395" ], "type": "genotype/variation", "id": "GDS4229_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4229", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4229.tab", "compression": "gz" } ], [ [ "GDS423.tab" ], { "title": "Normal human tissue expression profiling (HG-U95B)", "description": "Analysis of gene expression in a variety of normal tissues. Samples typically composed of a pool of 10-25 individuals. Included as part of the GeneNote project.", "type": "Expression profiling by array", "pubmed_id": "15388519", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE803", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS423", "description": "bone marrow", "sample_id": [ "GSM12635", "GSM12724" ], "type": "tissue", "id": "GDS423_1" }, { "dataset_id": "GDS423", "description": "liver", "sample_id": [ "GSM12640", "GSM12719" ], "type": "tissue", "id": "GDS423_2" }, { "dataset_id": "GDS423", "description": "heart", "sample_id": [ "GSM12645", "GSM12665" ], "type": "tissue", "id": "GDS423_3" }, { "dataset_id": "GDS423", "description": "spleen", "sample_id": [ "GSM12650", "GSM12670" ], "type": "tissue", "id": "GDS423_4" }, { "dataset_id": "GDS423", "description": "lung", "sample_id": [ "GSM12655", "GSM12699" ], "type": "tissue", "id": "GDS423_5" }, { "dataset_id": "GDS423", "description": "kidney", "sample_id": [ "GSM12660", "GSM12729" ], "type": "tissue", "id": "GDS423_6" }, { "dataset_id": "GDS423", "description": "skeletal muscle", "sample_id": [ "GSM12675", "GSM12694" ], "type": "tissue", "id": "GDS423_7" }, { "dataset_id": "GDS423", "description": "thymus", "sample_id": [ "GSM12684", "GSM12714" ], "type": "tissue", "id": "GDS423_8" }, { "dataset_id": "GDS423", "description": "brain", "sample_id": [ "GSM12689", "GSM12709" ], "type": "tissue", "id": "GDS423_9" }, { "dataset_id": "GDS423", "description": "spinal cord", "sample_id": [ "GSM12679", "GSM12704" ], "type": "tissue", "id": "GDS423_10" }, { "dataset_id": "GDS423", "description": "prostate", "sample_id": [ "GSM12734", "GSM12744" ], "type": "tissue", "id": "GDS423_11" }, { "dataset_id": "GDS423", "description": "pancreas", "sample_id": [ "GSM12739", "GSM12749" ], "type": "tissue", "id": "GDS423_12" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS423", "version": 1.0, "instances": "24", "variables": 10311, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS423.tab", "compression": "gz" } ], [ [ "GDS4231.tab" ], { "title": "Antiretroviral therapy effect on brain of patients with HIV-associated neurocognitive disorders", "description": "Analysis of postmortem brain of ART-treated, HIV-1-associated neurocognitive disorders (HAND) patients. ART reduces morbidity and mortality in HIV infection, but HAND persist despite treatment. Results provide insight into ART effectiveness in brain and into molecular signatures of HAND under ART.", "type": "Expression profiling by array", "pubmed_id": "21909266", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE28160", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4231", "description": "uninfected control", "sample_id": [ "GSM697483", "GSM697484", "GSM697485", "GSM697486", "GSM697487", "GSM697488", "GSM697489", "GSM697490", "GSM697491" ], "type": "disease state", "id": "GDS4231_1" }, { "dataset_id": "GDS4231", "description": "HIV1-HAND", "sample_id": [ "GSM697492", "GSM697493", "GSM697494", "GSM697495", "GSM697496", "GSM697497", "GSM697498", "GSM697499", "GSM697500", "GSM697501", "GSM697502", "GSM697503", "GSM697504", "GSM697505", "GSM697506", "GSM697507", "GSM697508", "GSM697509", "GSM697510", "GSM697511", "GSM697512", "GSM697513", "GSM697514", "GSM697515", "GSM697516", "GSM697517" ], "type": "disease state", "id": "GDS4231_2" }, { "dataset_id": "GDS4231", "description": "untreated", "sample_id": [ "GSM697483", "GSM697484", "GSM697485", "GSM697486", "GSM697487", "GSM697488", "GSM697489", "GSM697490", "GSM697491", "GSM697492", "GSM697493", "GSM697494", "GSM697495", "GSM697496", "GSM697497", "GSM697498", "GSM697499", "GSM697500", "GSM697501", "GSM697502", "GSM697503", "GSM697504", "GSM697505" ], "type": "agent", "id": "GDS4231_3" }, { "dataset_id": "GDS4231", "description": "antiretroviral therapy", "sample_id": [ "GSM697506", "GSM697507", "GSM697508", "GSM697509", "GSM697510", "GSM697511", "GSM697512", "GSM697513", "GSM697514", "GSM697515", "GSM697516", "GSM697517" ], "type": "agent", "id": "GDS4231_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4231", "version": 1.0, "instances": "35", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4231.tab", "compression": "gz" } ], [ [ "GDS4232.tab" ], { "title": "HIV infection effect on interferon alpha 2-treated monocyte-derived macrophages: time course", "description": "Temporal analysis of macrophages pretreated for 18hrs with interferon alpha 2 (IFN\u03b12) then infected with HIV-1 (Bal strain). IFN treatment prior to in vitro HIV infection inhibits virus replication. Results provide insight into molecular mechanisms underlying this modulation of viral replication.", "type": "Expression profiling by array", "pubmed_id": "22140520", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE30536", "order": "ordered", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4232", "description": "control", "sample_id": [ "GSM757646", "GSM757647", "GSM757648", "GSM757649", "GSM757650", "GSM757651" ], "type": "protocol", "id": "GDS4232_1" }, { "dataset_id": "GDS4232", "description": "IFN\u03b12 pre-treatment", "sample_id": [ "GSM757652", "GSM757653", "GSM757654", "GSM757655", "GSM757656", "GSM757657", "GSM757658", "GSM757659", "GSM757660", "GSM757661", "GSM757662" ], "type": "protocol", "id": "GDS4232_2" }, { "dataset_id": "GDS4232", "description": "control", "sample_id": [ "GSM757646", "GSM757647", "GSM757648", "GSM757649", "GSM757650", "GSM757651", "GSM757652", "GSM757653", "GSM757654", "GSM757655", "GSM757656", "GSM757657" ], "type": "infection", "id": "GDS4232_3" }, { "dataset_id": "GDS4232", "description": "HIV infection", "sample_id": [ "GSM757658", "GSM757659", "GSM757660", "GSM757661", "GSM757662" ], "type": "infection", "id": "GDS4232_4" }, { "dataset_id": "GDS4232", "description": "0 hr", "sample_id": [ "GSM757646", "GSM757652" ], "type": "time", "id": "GDS4232_5" }, { "dataset_id": "GDS4232", "description": "2 hr", "sample_id": [ "GSM757647", "GSM757653", "GSM757658" ], "type": "time", "id": "GDS4232_6" }, { "dataset_id": "GDS4232", "description": "4 hr", "sample_id": [ "GSM757648", "GSM757654", "GSM757659" ], "type": "time", "id": "GDS4232_7" }, { "dataset_id": "GDS4232", "description": "8 hr", "sample_id": [ "GSM757649", "GSM757655", "GSM757660" ], "type": "time", "id": "GDS4232_8" }, { "dataset_id": "GDS4232", "description": "16 hr", "sample_id": [ "GSM757650", "GSM757656", "GSM757661" ], "type": "time", "id": "GDS4232_9" }, { "dataset_id": "GDS4232", "description": "24 hr", "sample_id": [ "GSM757651", "GSM757657", "GSM757662" ], "type": "time", "id": "GDS4232_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4232", "version": 1.0, "instances": "17", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4232.tab", "compression": "gz" } ], [ [ "GDS4233.tab" ], { "title": "Protein kinase HIPK2 overexpression effect on Human Embryonic Kidney cells", "description": "Analysis of HEK293 cells transfected with homeo-domain interacting protein kinase 2 (HIPK2) and HIPK2-DN mutant. HIPK2 mediates renal fibrosis in 3 mouse models of renal fibrosis (Tg26, UUO, folic-acidinduced renal fibrosis). Results provide further insight into role of HIPK2 in kidney fibrosis.", "type": "Expression profiling by array", "pubmed_id": "22406746", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE35226", "order": "none", "update_date": "May 06 2013", "subsets": [ { "dataset_id": "GDS4233", "description": "wild type control", "sample_id": [ "GSM864208", "GSM864209", "GSM864210", "GSM864211" ], "type": "genotype/variation", "id": "GDS4233_1" }, { "dataset_id": "GDS4233", "description": "HIPK2 transfected", "sample_id": [ "GSM864204", "GSM864205", "GSM864206", "GSM864207" ], "type": "genotype/variation", "id": "GDS4233_2" }, { "dataset_id": "GDS4233", "description": "HIPK2-DN mutant transfected", "sample_id": [ "GSM864212", "GSM864213", "GSM864214", "GSM864215" ], "type": "genotype/variation", "id": "GDS4233_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4233", "version": 1.0, "instances": "12", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4233.tab", "compression": "gz" } ], [ [ "GDS4234.tab" ], { "title": "Transgenic model Tg26 of HIV-Associated Nephropathy: kidney cortex", "description": "Analysis of kidney cortices from HIV-1 transgenic, FVB/N males and females (Tg26). Tg26 models the renal pathologic changes observed in human disease and is used to study HIV-associated nephropathy (HIVAN) pathogenesis. Results provide insight into the molecular mechanisms underlying HIVAN.", "type": "Expression profiling by array", "pubmed_id": "22406746", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE35226", "order": "none", "update_date": "Apr 28 2013", "subsets": [ { "dataset_id": "GDS4234", "description": "wild type", "sample_id": [ "GSM864198", "GSM864199", "GSM864200", "GSM864201", "GSM864202", "GSM864203" ], "type": "genotype/variation", "id": "GDS4234_1" }, { "dataset_id": "GDS4234", "description": "Tg26 HIV", "sample_id": [ "GSM864192", "GSM864193", "GSM864194", "GSM864195", "GSM864196", "GSM864197" ], "type": "genotype/variation", "id": "GDS4234_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4234", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4234.tab", "compression": "gz" } ], [ [ "GDS4236.tab" ], { "title": "Rapamycin-resistant diffuse large B-cell lymphoma cell lines", "description": "Analysis of diffuse large B-cell lymphoma (DLBCL) cell lines resistant to rapamycin, the prototypical mTOR (mammalian Target Of Rapamycin) inhibitor. The mTOR pathway is constitutively activated in DLBCL. Results provide insight into mechanisms of resistance to mTOR inhibition in DLBCL.", "type": "Expression profiling by array", "pubmed_id": "22338016", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE27255", "order": "none", "update_date": "Apr 29 2013", "subsets": [ { "dataset_id": "GDS4236", "description": "OCI-Ly1", "sample_id": [ "GSM673825" ], "type": "cell line", "id": "GDS4236_1" }, { "dataset_id": "GDS4236", "description": "OCI-Ly3", "sample_id": [ "GSM673826" ], "type": "cell line", "id": "GDS4236_2" }, { "dataset_id": "GDS4236", "description": "OCI-Ly4", "sample_id": [ "GSM673827" ], "type": "cell line", "id": "GDS4236_3" }, { "dataset_id": "GDS4236", "description": "OCI-Ly10", "sample_id": [ "GSM673828" ], "type": "cell line", "id": "GDS4236_4" }, { "dataset_id": "GDS4236", "description": "OCI-Ly18", "sample_id": [ "GSM673829" ], "type": "cell line", "id": "GDS4236_5" }, { "dataset_id": "GDS4236", "description": "OCI-Ly19", "sample_id": [ "GSM673830" ], "type": "cell line", "id": "GDS4236_6" }, { "dataset_id": "GDS4236", "description": "Farage", "sample_id": [ "GSM673832" ], "type": "cell line", "id": "GDS4236_7" }, { "dataset_id": "GDS4236", "description": "WSU-NIH", "sample_id": [ "GSM673836" ], "type": "cell line", "id": "GDS4236_8" }, { "dataset_id": "GDS4236", "description": "SUDHL6", "sample_id": [ "GSM673838" ], "type": "cell line", "id": "GDS4236_9" }, { "dataset_id": "GDS4236", "description": "SUDHL8", "sample_id": [ "GSM673831" ], "type": "cell line", "id": "GDS4236_10" }, { "dataset_id": "GDS4236", "description": "SUDHL4", "sample_id": [ "GSM673837" ], "type": "cell line", "id": "GDS4236_11" }, { "dataset_id": "GDS4236", "description": "Karpas 422", "sample_id": [ "GSM673833" ], "type": "cell line", "id": "GDS4236_12" }, { "dataset_id": "GDS4236", "description": "Pfeiffer", "sample_id": [ "GSM673834" ], "type": "cell line", "id": "GDS4236_13" }, { "dataset_id": "GDS4236", "description": "Toledo", "sample_id": [ "GSM673835" ], "type": "cell line", "id": "GDS4236_14" }, { "dataset_id": "GDS4236", "description": "rapamycin: sensitive", "sample_id": [ "GSM673825", "GSM673826", "GSM673827", "GSM673828", "GSM673829", "GSM673832", "GSM673836", "GSM673838" ], "type": "other", "id": "GDS4236_15" }, { "dataset_id": "GDS4236", "description": "rapamycin: resistant", "sample_id": [ "GSM673830", "GSM673831", "GSM673833", "GSM673834", "GSM673835", "GSM673837" ], "type": "other", "id": "GDS4236_16" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4236", "version": 1.0, "instances": "14", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4236.tab", "compression": "gz" } ], [ [ "GDS4238.tab" ], { "title": "Bronchial epithelial cell response to influenza virus, viral RNA and interferon-beta: time course", "description": "Analysis of HBECs treated with IFN\u03b2, wild-type H1N1 influenza (PR8), mutant \u0394NS1 virus (PR8 with a deleted NS1 gene), viral RNA (purified directly from PR8), up to 18 hr post-treatment. Results provide insight into the molecular mechanisms mediating influenza-host interactions in H1N1 infection.", "type": "Expression profiling by array", "pubmed_id": "20064372", "platform": "GPL3921", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "169", "value_type": "count", "reference_series": "GSE19392", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4238", "description": "interferon-beta", "sample_id": [ "GSM528681", "GSM528682", "GSM528683", "GSM528684", "GSM528685", "GSM528686", "GSM528687", "GSM528688", "GSM528689", "GSM528690", "GSM528691", "GSM528692", "GSM528693", "GSM528694", "GSM528695", "GSM528696", "GSM528697", "GSM528698", "GSM528699", "GSM528700" ], "type": "agent", "id": "GDS4238_1" }, { "dataset_id": "GDS4238", "description": "PR8 pre trypsin", "sample_id": [ "GSM528779", "GSM528780", "GSM528781", "GSM528782", "GSM528783", "GSM528784", "GSM528785", "GSM528786", "GSM528787", "GSM528788" ], "type": "agent", "id": "GDS4238_2" }, { "dataset_id": "GDS4238", "description": "PR8 post trypsin", "sample_id": [ "GSM528759", "GSM528760", "GSM528761", "GSM528762", "GSM528763", "GSM528764", "GSM528765", "GSM528766", "GSM528767", "GSM528768", "GSM528769", "GSM528770", "GSM528771", "GSM528772", "GSM528773", "GSM528774", "GSM528775", "GSM528776", "GSM528777", "GSM528778" ], "type": "agent", "id": "GDS4238_3" }, { "dataset_id": "GDS4238", "description": "PR8 \u0394NS1 mutant pre trypsin", "sample_id": [ "GSM528671", "GSM528672", "GSM528673", "GSM528674", "GSM528675", "GSM528676", "GSM528677", "GSM528678", "GSM528679", "GSM528680" ], "type": "agent", "id": "GDS4238_4" }, { "dataset_id": "GDS4238", "description": "PR8 \u0394NS1 mutant post trypsin", "sample_id": [ "GSM528651", "GSM528652", "GSM528653", "GSM528654", "GSM528655", "GSM528656", "GSM528657", "GSM528658", "GSM528659", "GSM528660", "GSM528661", "GSM528662", "GSM528663", "GSM528664", "GSM528665", "GSM528666", "GSM528667", "GSM528668", "GSM528669", "GSM528670" ], "type": "agent", "id": "GDS4238_5" }, { "dataset_id": "GDS4238", "description": "PR8 viral RNA + LTX", "sample_id": [ "GSM528701", "GSM528702", "GSM528703", "GSM528704", "GSM528705", "GSM528706", "GSM528707", "GSM528708", "GSM528709", "GSM528710", "GSM528711", "GSM528712", "GSM528713", "GSM528714", "GSM528715", "GSM528716", "GSM528717", "GSM528718", "GSM528719", "GSM528720" ], "type": "agent", "id": "GDS4238_6" }, { "dataset_id": "GDS4238", "description": "LTX alone", "sample_id": [ "GSM528721", "GSM528722", "GSM528723", "GSM528724", "GSM528725", "GSM528726", "GSM528727", "GSM528728", "GSM528729", "GSM528730", "GSM528731", "GSM528732", "GSM528733", "GSM528734", "GSM528735", "GSM528736", "GSM528737", "GSM528738" ], "type": "agent", "id": "GDS4238_7" }, { "dataset_id": "GDS4238", "description": "media alone", "sample_id": [ "GSM528739", "GSM528740", "GSM528741", "GSM528742", "GSM528743", "GSM528744", "GSM528745", "GSM528746", "GSM528747", "GSM528748", "GSM528749", "GSM528750", "GSM528751", "GSM528752", "GSM528753", "GSM528754", "GSM528755", "GSM528756", "GSM528757", "GSM528758" ], "type": "agent", "id": "GDS4238_8" }, { "dataset_id": "GDS4238", "description": "media pre trypsin", "sample_id": [ "GSM528620", "GSM528621", "GSM528622", "GSM528623", "GSM528624", "GSM528640", "GSM528641", "GSM528642", "GSM528643", "GSM528644" ], "type": "agent", "id": "GDS4238_9" }, { "dataset_id": "GDS4238", "description": "media post trypsin", "sample_id": [ "GSM528625", "GSM528626", "GSM528627", "GSM528628", "GSM528629", "GSM528630", "GSM528631", "GSM528632", "GSM528633", "GSM528634", "GSM528635", "GSM528636", "GSM528637", "GSM528638", "GSM528639" ], "type": "agent", "id": "GDS4238_10" }, { "dataset_id": "GDS4238", "description": "multiple sample pool", "sample_id": [ "GSM528645", "GSM528646", "GSM528647", "GSM528648", "GSM528649", "GSM528650" ], "type": "agent", "id": "GDS4238_11" }, { "dataset_id": "GDS4238", "description": "NA", "sample_id": [ "GSM528645", "GSM528646", "GSM528647", "GSM528648", "GSM528649", "GSM528650", "GSM528721", "GSM528722", "GSM528723", "GSM528724", "GSM528725", "GSM528726", "GSM528727", "GSM528728", "GSM528729", "GSM528730", "GSM528731", "GSM528732", "GSM528733", "GSM528734", "GSM528735", "GSM528736", "GSM528737", "GSM528738", "GSM528739", "GSM528740", "GSM528741", "GSM528742", "GSM528743", "GSM528744", "GSM528745", "GSM528746", "GSM528747", "GSM528748", "GSM528749", "GSM528750", "GSM528751", "GSM528752", "GSM528753", "GSM528754", "GSM528755", "GSM528756", "GSM528757", "GSM528758" ], "type": "dose", "id": "GDS4238_12" }, { "dataset_id": "GDS4238", "description": "1000 U/ml", "sample_id": [ "GSM528681", "GSM528682", "GSM528683", "GSM528684", "GSM528685", "GSM528686", "GSM528687", "GSM528688", "GSM528689", "GSM528690", "GSM528691", "GSM528692", "GSM528693", "GSM528694", "GSM528695", "GSM528696", "GSM528697", "GSM528698", "GSM528699", "GSM528700" ], "type": "dose", "id": "GDS4238_13" }, { "dataset_id": "GDS4238", "description": "moi: 5", "sample_id": [ "GSM528651", "GSM528652", "GSM528653", "GSM528654", "GSM528655", "GSM528656", "GSM528657", "GSM528658", "GSM528659", "GSM528660", "GSM528661", "GSM528662", "GSM528663", "GSM528664", "GSM528665", "GSM528666", "GSM528667", "GSM528668", "GSM528669", "GSM528670", "GSM528671", "GSM528672", "GSM528673", "GSM528674", "GSM528675", "GSM528676", "GSM528677", "GSM528678", "GSM528679", "GSM528680", "GSM528701", "GSM528702", "GSM528703", "GSM528704", "GSM528705", "GSM528706", "GSM528707", "GSM528708", "GSM528709", "GSM528710", "GSM528711", "GSM528712", "GSM528713", "GSM528714", "GSM528715", "GSM528716", "GSM528717", "GSM528718", "GSM528719", "GSM528720", "GSM528759", "GSM528760", "GSM528761", "GSM528762", "GSM528763", "GSM528764", "GSM528765", "GSM528766", "GSM528767", "GSM528768", "GSM528769", "GSM528770", "GSM528771", "GSM528772", "GSM528773", "GSM528774", "GSM528775", "GSM528776", "GSM528777", "GSM528778", "GSM528779", "GSM528780", "GSM528781", "GSM528782", "GSM528783", "GSM528784", "GSM528785", "GSM528786", "GSM528787", "GSM528788" ], "type": "dose", "id": "GDS4238_14" }, { "dataset_id": "GDS4238", "description": "6ul", "sample_id": [ "GSM528640", "GSM528641", "GSM528642", "GSM528643", "GSM528644" ], "type": "dose", "id": "GDS4238_15" }, { "dataset_id": "GDS4238", "description": "25ul", "sample_id": [ "GSM528625", "GSM528626", "GSM528627", "GSM528628", "GSM528629" ], "type": "dose", "id": "GDS4238_16" }, { "dataset_id": "GDS4238", "description": "100ul", "sample_id": [ "GSM528620", "GSM528621", "GSM528622", "GSM528623", "GSM528624" ], "type": "dose", "id": "GDS4238_17" }, { "dataset_id": "GDS4238", "description": "500ul", "sample_id": [ "GSM528630", "GSM528631", "GSM528632", "GSM528633", "GSM528634", "GSM528635", "GSM528636", "GSM528637", "GSM528638", "GSM528639" ], "type": "dose", "id": "GDS4238_18" }, { "dataset_id": "GDS4238", "description": "NA", "sample_id": [ "GSM528645", "GSM528646", "GSM528647", "GSM528648", "GSM528649", "GSM528650" ], "type": "time", "id": "GDS4238_19" }, { "dataset_id": "GDS4238", "description": "0.25 hour", "sample_id": [ "GSM528681", "GSM528682", "GSM528779", "GSM528759", "GSM528760", "GSM528651", "GSM528652", "GSM528671", "GSM528701", "GSM528702", "GSM528721", "GSM528722", "GSM528739", "GSM528740" ], "type": "time", "id": "GDS4238_20" }, { "dataset_id": "GDS4238", "description": "0.5 hour", "sample_id": [ "GSM528683", "GSM528684", "GSM528780", "GSM528761", "GSM528762", "GSM528653", "GSM528654", "GSM528672", "GSM528703", "GSM528704", "GSM528723", "GSM528724", "GSM528741", "GSM528742", "GSM528620", "GSM528625", "GSM528630", "GSM528631", "GSM528640" ], "type": "time", "id": "GDS4238_21" }, { "dataset_id": "GDS4238", "description": "1.0 hour", "sample_id": [ "GSM528687", "GSM528688", "GSM528782", "GSM528765", "GSM528766", "GSM528657", "GSM528658", "GSM528674", "GSM528707", "GSM528708", "GSM528727", "GSM528728", "GSM528745", "GSM528746" ], "type": "time", "id": "GDS4238_22" }, { "dataset_id": "GDS4238", "description": "1.5 hour", "sample_id": [ "GSM528685", "GSM528686", "GSM528781", "GSM528763", "GSM528764", "GSM528655", "GSM528656", "GSM528705", "GSM528706", "GSM528725", "GSM528726", "GSM528743", "GSM528744", "GSM528673", "GSM528621", "GSM528626", "GSM528632", "GSM528633", "GSM528641" ], "type": "time", "id": "GDS4238_23" }, { "dataset_id": "GDS4238", "description": "2 hour", "sample_id": [ "GSM528693", "GSM528694", "GSM528785", "GSM528771", "GSM528663", "GSM528664", "GSM528677", "GSM528713", "GSM528714", "GSM528751", "GSM528752", "GSM528772" ], "type": "time", "id": "GDS4238_24" }, { "dataset_id": "GDS4238", "description": "4 hour", "sample_id": [ "GSM528695", "GSM528696", "GSM528786", "GSM528773", "GSM528774", "GSM528665", "GSM528666", "GSM528678", "GSM528715", "GSM528716", "GSM528733", "GSM528734", "GSM528753", "GSM528754", "GSM528623", "GSM528628", "GSM528636", "GSM528637", "GSM528643" ], "type": "time", "id": "GDS4238_25" }, { "dataset_id": "GDS4238", "description": "6 hour", "sample_id": [ "GSM528697", "GSM528698", "GSM528787", "GSM528775", "GSM528776", "GSM528667", "GSM528668", "GSM528679", "GSM528717", "GSM528718", "GSM528735", "GSM528736", "GSM528755", "GSM528756" ], "type": "time", "id": "GDS4238_26" }, { "dataset_id": "GDS4238", "description": "8 hour", "sample_id": [ "GSM528699", "GSM528700", "GSM528788", "GSM528777", "GSM528778", "GSM528669", "GSM528670", "GSM528680", "GSM528719", "GSM528720", "GSM528737", "GSM528738", "GSM528757", "GSM528758", "GSM528624", "GSM528629", "GSM528638", "GSM528639", "GSM528644" ], "type": "time", "id": "GDS4238_27" }, { "dataset_id": "GDS4238", "description": "12 hour", "sample_id": [ "GSM528689", "GSM528690", "GSM528783", "GSM528767", "GSM528768", "GSM528659", "GSM528660", "GSM528675", "GSM528709", "GSM528710", "GSM528729", "GSM528730", "GSM528747", "GSM528748" ], "type": "time", "id": "GDS4238_28" }, { "dataset_id": "GDS4238", "description": "18 hour", "sample_id": [ "GSM528691", "GSM528692", "GSM528784", "GSM528769", "GSM528770", "GSM528661", "GSM528662", "GSM528676", "GSM528711", "GSM528712", "GSM528731", "GSM528732", "GSM528750", "GSM528749", "GSM528622", "GSM528627", "GSM528634", "GSM528635", "GSM528642" ], "type": "time", "id": "GDS4238_29" } ], "taxid": "9606", "genes": 13936, "aggregation_function": "mean", "name": "GDS4238", "version": 1.0, "instances": "169", "variables": 13940, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4238.tab", "compression": "gz" } ], [ [ "GDS4239.tab" ], { "title": "Pandemic and seasonal influenza A H1N1 infection of differentiated type I-like alveolar epithelial cells in vitro", "description": "Analysis of type I-like alveolar epithelial cells infected with pandemic influenza H1N1 (pdmH1N1) or seasonal H1N1. Type I alveolar epithelial cells are a key target cell in pdmH1N1 pneumonia. Results provide insight into molecular mechanisms underlying host responses induced by H1N1 infections.", "type": "Expression profiling by array", "pubmed_id": "21029402", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE24533", "order": "none", "update_date": "Apr 30 2013", "subsets": [ { "dataset_id": "GDS4239", "description": "donor 1", "sample_id": [ "GSM604841", "GSM604843", "GSM604842" ], "type": "individual", "id": "GDS4239_1" }, { "dataset_id": "GDS4239", "description": "donor 2", "sample_id": [ "GSM604844", "GSM604846", "GSM604845" ], "type": "individual", "id": "GDS4239_2" }, { "dataset_id": "GDS4239", "description": "donor 3", "sample_id": [ "GSM604847", "GSM604849", "GSM604848" ], "type": "individual", "id": "GDS4239_3" }, { "dataset_id": "GDS4239", "description": "mock-infected", "sample_id": [ "GSM604841", "GSM604844", "GSM604847" ], "type": "infection", "id": "GDS4239_4" }, { "dataset_id": "GDS4239", "description": "pdmH1N1", "sample_id": [ "GSM604843", "GSM604846", "GSM604849" ], "type": "infection", "id": "GDS4239_5" }, { "dataset_id": "GDS4239", "description": "seasonal H1N1", "sample_id": [ "GSM604842", "GSM604845", "GSM604848" ], "type": "infection", "id": "GDS4239_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4239", "version": 1.0, "instances": "9", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4239.tab", "compression": "gz" } ], [ [ "GDS424.tab" ], { "title": "Normal human tissue expression profiling (HG-U95C)", "description": "Analysis of gene expression in a variety of normal tissues. Samples typically composed of a pool of 10-25 individuals. Included as part of the GeneNote project.", "type": "Expression profiling by array", "pubmed_id": "15388519", "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE803", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS424", "description": "bone marrow", "sample_id": [ "GSM12636", "GSM12725" ], "type": "tissue", "id": "GDS424_1" }, { "dataset_id": "GDS424", "description": "liver", "sample_id": [ "GSM12641", "GSM12720" ], "type": "tissue", "id": "GDS424_2" }, { "dataset_id": "GDS424", "description": "heart", "sample_id": [ "GSM12646", "GSM12666" ], "type": "tissue", "id": "GDS424_3" }, { "dataset_id": "GDS424", "description": "spleen", "sample_id": [ "GSM12651", "GSM12671" ], "type": "tissue", "id": "GDS424_4" }, { "dataset_id": "GDS424", "description": "lung", "sample_id": [ "GSM12656", "GSM12700" ], "type": "tissue", "id": "GDS424_5" }, { "dataset_id": "GDS424", "description": "kidney", "sample_id": [ "GSM12661", "GSM12730" ], "type": "tissue", "id": "GDS424_6" }, { "dataset_id": "GDS424", "description": "skeletal muscle", "sample_id": [ "GSM12676", "GSM12695" ], "type": "tissue", "id": "GDS424_7" }, { "dataset_id": "GDS424", "description": "thymus", "sample_id": [ "GSM12685", "GSM12715" ], "type": "tissue", "id": "GDS424_8" }, { "dataset_id": "GDS424", "description": "brain", "sample_id": [ "GSM12690", "GSM12710" ], "type": "tissue", "id": "GDS424_9" }, { "dataset_id": "GDS424", "description": "spinal cord", "sample_id": [ "GSM12680", "GSM12705" ], "type": "tissue", "id": "GDS424_10" }, { "dataset_id": "GDS424", "description": "prostate", "sample_id": [ "GSM12735", "GSM12745" ], "type": "tissue", "id": "GDS424_11" }, { "dataset_id": "GDS424", "description": "pancreas", "sample_id": [ "GSM12740", "GSM12750" ], "type": "tissue", "id": "GDS424_12" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS424", "version": 1.0, "instances": "24", "variables": 10624, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS424.tab", "compression": "gz" } ], [ [ "GDS4240.tab" ], { "title": "Severe pandemic H1N1 influenza effect on peripheral blood: time course", "description": "Temporal analysis of peripheral blood from patients with severe pdm(H1N1) influenza, bilateral chest infiltrates, and in need of mechanical ventilation, but without significant co-morbidity. Results provide insight into molecular basis of immune responses in patients with severe pdmH1N1 infection.", "type": "Expression profiling by array", "pubmed_id": "21781987", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE27131", "order": "none", "update_date": "Apr 30 2013", "subsets": [ { "dataset_id": "GDS4240", "description": "control 1", "sample_id": [ "GSM670463" ], "type": "individual", "id": "GDS4240_1" }, { "dataset_id": "GDS4240", "description": "control 2", "sample_id": [ "GSM670464" ], "type": "individual", "id": "GDS4240_2" }, { "dataset_id": "GDS4240", "description": "control 3", "sample_id": [ "GSM670465" ], "type": "individual", "id": "GDS4240_3" }, { "dataset_id": "GDS4240", "description": "control 4", "sample_id": [ "GSM670466" ], "type": "individual", "id": "GDS4240_4" }, { "dataset_id": "GDS4240", "description": "control 5", "sample_id": [ "GSM670467" ], "type": "individual", "id": "GDS4240_5" }, { "dataset_id": "GDS4240", "description": "control 6", "sample_id": [ "GSM670468" ], "type": "individual", "id": "GDS4240_6" }, { "dataset_id": "GDS4240", "description": "control 7", "sample_id": [ "GSM670469" ], "type": "individual", "id": "GDS4240_7" }, { "dataset_id": "GDS4240", "description": "patient 1", "sample_id": [ "GSM670449", "GSM670450" ], "type": "individual", "id": "GDS4240_8" }, { "dataset_id": "GDS4240", "description": "patient 2", "sample_id": [ "GSM670451", "GSM670452" ], "type": "individual", "id": "GDS4240_9" }, { "dataset_id": "GDS4240", "description": "patient 3", "sample_id": [ "GSM670453", "GSM670454" ], "type": "individual", "id": "GDS4240_10" }, { "dataset_id": "GDS4240", "description": "patient 4", "sample_id": [ "GSM670455", "GSM670456" ], "type": "individual", "id": "GDS4240_11" }, { "dataset_id": "GDS4240", "description": "patient 5", "sample_id": [ "GSM670457", "GSM670458" ], "type": "individual", "id": "GDS4240_12" }, { "dataset_id": "GDS4240", "description": "patient 6", "sample_id": [ "GSM670459", "GSM670460" ], "type": "individual", "id": "GDS4240_13" }, { "dataset_id": "GDS4240", "description": "patient 7", "sample_id": [ "GSM670461", "GSM670462" ], "type": "individual", "id": "GDS4240_14" }, { "dataset_id": "GDS4240", "description": "control", "sample_id": [ "GSM670463", "GSM670464", "GSM670465", "GSM670466", "GSM670467", "GSM670468", "GSM670469" ], "type": "time", "id": "GDS4240_15" }, { "dataset_id": "GDS4240", "description": "day 0", "sample_id": [ "GSM670449", "GSM670451", "GSM670453", "GSM670455", "GSM670457", "GSM670459", "GSM670461" ], "type": "time", "id": "GDS4240_16" }, { "dataset_id": "GDS4240", "description": "day 6", "sample_id": [ "GSM670450", "GSM670452", "GSM670454", "GSM670456", "GSM670458", "GSM670460", "GSM670462" ], "type": "time", "id": "GDS4240_17" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4240", "version": 1.0, "instances": "21", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4240.tab", "compression": "gz" } ], [ [ "GDS4243.tab" ], { "title": "Host immune response of bacterial infected nematode stimulated with small molecule", "description": "Analysis of bacterial infected C. elegans treated with 70 \u03bcM RPW-24 or DMSO. In a C.elegans-bacterial infection assay screening small molecules, RPW-24 was identified as a putative antimicrobial agent. Results provide insight into C. elegans conserved immune response to bacterial infection.", "type": "Expression profiling by array", "pubmed_id": "22719261", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE37266", "order": "none", "update_date": "Apr 15 2013", "subsets": [ { "dataset_id": "GDS4243", "description": "RPW-24", "sample_id": [ "GSM915204", "GSM915205", "GSM915206" ], "type": "agent", "id": "GDS4243_1" }, { "dataset_id": "GDS4243", "description": "DMSO control", "sample_id": [ "GSM915201", "GSM915202", "GSM915203" ], "type": "agent", "id": "GDS4243_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4243", "version": 1.0, "instances": "6", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4243.tab", "compression": "gz" } ], [ [ "GDS425.tab" ], { "title": "Normal human tissue expression profiling (HG-U95D)", "description": "Analysis of gene expression in a variety of normal tissues. Samples typically composed of a pool of 10-25 individuals. Included as part of the GeneNote project.", "type": "Expression profiling by array", "pubmed_id": "15388519", "platform": "GPL94", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12644", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE803", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS425", "description": "bone marrow", "sample_id": [ "GSM12637", "GSM12726" ], "type": "tissue", "id": "GDS425_1" }, { "dataset_id": "GDS425", "description": "liver", "sample_id": [ "GSM12642", "GSM12721" ], "type": "tissue", "id": "GDS425_2" }, { "dataset_id": "GDS425", "description": "heart", "sample_id": [ "GSM12647", "GSM12667" ], "type": "tissue", "id": "GDS425_3" }, { "dataset_id": "GDS425", "description": "spleen", "sample_id": [ "GSM12652", "GSM12672" ], "type": "tissue", "id": "GDS425_4" }, { "dataset_id": "GDS425", "description": "lung", "sample_id": [ "GSM12657", "GSM12701" ], "type": "tissue", "id": "GDS425_5" }, { "dataset_id": "GDS425", "description": "kidney", "sample_id": [ "GSM12662", "GSM12731" ], "type": "tissue", "id": "GDS425_6" }, { "dataset_id": "GDS425", "description": "skeletal muscle", "sample_id": [ "GSM12677", "GSM12696" ], "type": "tissue", "id": "GDS425_7" }, { "dataset_id": "GDS425", "description": "thymus", "sample_id": [ "GSM12686", "GSM12716" ], "type": "tissue", "id": "GDS425_8" }, { "dataset_id": "GDS425", "description": "brain", "sample_id": [ "GSM12691", "GSM12711" ], "type": "tissue", "id": "GDS425_9" }, { "dataset_id": "GDS425", "description": "spinal cord", "sample_id": [ "GSM12681", "GSM12706" ], "type": "tissue", "id": "GDS425_10" }, { "dataset_id": "GDS425", "description": "prostate", "sample_id": [ "GSM12736", "GSM12746" ], "type": "tissue", "id": "GDS425_11" }, { "dataset_id": "GDS425", "description": "pancreas", "sample_id": [ "GSM12741", "GSM12751" ], "type": "tissue", "id": "GDS425_12" } ], "taxid": "9606", "genes": 11408, "aggregation_function": "mean", "name": "GDS425", "version": 1.0, "instances": "24", "variables": 11410, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS425.tab", "compression": "gz" } ], [ [ "GDS4251.tab" ], { "title": "Lubiprostone effect on cystic fibrosis small intestine phenotype", "description": "Analysis of small intestine from Cftr null and wild type mice treated with fluid secretion activator lubiprostone. Cystic fibrosis (CF) mice display CF trait of impaired mucus turnover. Results provide insight into response of CF intestine to lubiprostone treatment.", "type": "Expression profiling by array", "pubmed_id": "20843337", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE18327", "order": "none", "update_date": "Apr 23 2013", "subsets": [ { "dataset_id": "GDS4251", "description": "wild type", "sample_id": [ "GSM457637", "GSM457638" ], "type": "genotype/variation", "id": "GDS4251_1" }, { "dataset_id": "GDS4251", "description": "Cftr null", "sample_id": [ "GSM457639", "GSM457640" ], "type": "genotype/variation", "id": "GDS4251_2" }, { "dataset_id": "GDS4251", "description": "no treatment", "sample_id": [ "GSM457637", "GSM457639" ], "type": "agent", "id": "GDS4251_3" }, { "dataset_id": "GDS4251", "description": "lubiprostone", "sample_id": [ "GSM457638", "GSM457640" ], "type": "agent", "id": "GDS4251_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4251", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4251.tab", "compression": "gz" } ], [ [ "GDS4252.tab" ], { "title": "Cystic fibrosis bronchial epithelial cells exposure to Pseudomonas aeruginosa PA01 biofilms", "description": "Analysis of cystic fibrosis (CF) bronchial epithelial CFBE41o- cells exposed to Pseudomonas aeruginosa PA01 biofilms. Cells overexpressing 508del-CFTR and cells rescued with wild type CFTR were examined. CFTR mutations enhance the inflammatory response in the lung to PA01 infection.", "type": "Expression profiling by array", "pubmed_id": "22821996", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE30439", "order": "none", "update_date": "Apr 23 2013", "subsets": [ { "dataset_id": "GDS4252", "description": "CFTR mutant", "sample_id": [ "GSM754979", "GSM754980", "GSM754981", "GSM754982", "GSM754983", "GSM754984", "GSM754985", "GSM754986" ], "type": "genotype/variation", "id": "GDS4252_1" }, { "dataset_id": "GDS4252", "description": "CFTR wild type", "sample_id": [ "GSM754987", "GSM754988", "GSM754989", "GSM754990", "GSM754991", "GSM754992", "GSM754993", "GSM754994" ], "type": "genotype/variation", "id": "GDS4252_2" }, { "dataset_id": "GDS4252", "description": "PA01", "sample_id": [ "GSM754983", "GSM754984", "GSM754985", "GSM754986", "GSM754991", "GSM754992", "GSM754993", "GSM754994" ], "type": "agent", "id": "GDS4252_3" }, { "dataset_id": "GDS4252", "description": "unexposed", "sample_id": [ "GSM754979", "GSM754980", "GSM754981", "GSM754982", "GSM754987", "GSM754988", "GSM754989", "GSM754990" ], "type": "agent", "id": "GDS4252_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4252", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4252.tab", "compression": "gz" } ], [ [ "GDS4253.tab" ], { "title": "Lung epithelial cells response to lipopolysaccharide exposure", "description": "Analysis of laser-microdissected airway epithelial cells from snap-frozen lung 0 and 2 days after lipopolysaccharide (LPS) exposure. Inhalation of LPS can lead to chronic lung diseases like cystic fibrosis and asthma. Results provide insight into inflammatory mediators modulated by LPS exposure.", "type": "Expression profiling by array", "pubmed_id": "22461702", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE36174", "order": "ordered", "update_date": "Apr 23 2013", "subsets": [ { "dataset_id": "GDS4253", "description": "0 day", "sample_id": [ "GSM882304", "GSM882306", "GSM882307" ], "type": "time", "id": "GDS4253_1" }, { "dataset_id": "GDS4253", "description": "2 day", "sample_id": [ "GSM882309", "GSM882310", "GSM882312" ], "type": "time", "id": "GDS4253_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS4253", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4253.tab", "compression": "gz" } ], [ [ "GDS4255.tab" ], { "title": "Cystic fibrosis transmembrane conductance regulator expression in airway epithelial cells", "description": "Analysis of Calu-3 airway epithelial cells transfected with miR-138 mimic or SIN3A siRNA. MicroRNA-138 regulates Cystic fibrosis transmembrane conductance regulator (CFTR) expression through its interactions with the transcriptional regulatory protein SIN3A.", "type": "Expression profiling by array", "pubmed_id": "22853952", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE38956", "order": "none", "update_date": "Apr 23 2013", "subsets": [ { "dataset_id": "GDS4255", "description": "control", "sample_id": [ "GSM952740", "GSM952741", "GSM952742", "GSM952746", "GSM952747", "GSM952748" ], "type": "protocol", "id": "GDS4255_1" }, { "dataset_id": "GDS4255", "description": "SIN3A siRNA treatment", "sample_id": [ "GSM952743", "GSM952744", "GSM952745" ], "type": "protocol", "id": "GDS4255_2" }, { "dataset_id": "GDS4255", "description": "miR-138 mimic treatment", "sample_id": [ "GSM952749", "GSM952750", "GSM952751" ], "type": "protocol", "id": "GDS4255_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4255", "version": 1.0, "instances": "12", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4255.tab", "compression": "gz" } ], [ [ "GDS4256.tab" ], { "title": "Caseous tuberculosis granulomas comparison with normal lung parenchyma", "description": "Analysis of caseous pulmonary tuberculosis (TB) granulomas. TB progression involves caseous granuloma development that cavitates, releasing infectious Mycobacterium tuberculosis bacilli. Results provide insight into TB etiology and pathogen-mediated dysregulation of host lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "20597103", "platform": "GPL1352", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "61359", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE20050", "order": "none", "update_date": "May 01 2013", "subsets": [ { "dataset_id": "GDS4256", "description": "caseous TB granulomas", "sample_id": [ "GSM501249", "GSM501250", "GSM501251", "GSM501252", "GSM501253" ], "type": "cell type", "id": "GDS4256_1" }, { "dataset_id": "GDS4256", "description": "normal lung parenchyma", "sample_id": [ "GSM501254", "GSM501255" ], "type": "cell type", "id": "GDS4256_2" } ], "taxid": "9606", "genes": 32392, "aggregation_function": "mean", "name": "GDS4256", "version": 1.0, "instances": "7", "variables": 32394, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4256.tab", "compression": "gz" } ], [ [ "GDS4257.tab" ], { "title": "Early lung immune response in tuberculosis: time course", "description": "Analysis of Mycobacterium tuberculosis (Mt)-infected lung 0 to 21 days after infection. TB immunity is associated with IFN\u03b3 lung T helper cell type 1 (Th1) accumulation and Mt-infected macrophage activation. Results provide insight into immune events that occur prior to Th1 accumulation in TB lung.", "type": "Expression profiling by array", "pubmed_id": "21249199", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE23014", "order": "none", "update_date": "May 01 2013", "subsets": [ { "dataset_id": "GDS4257", "description": "0 day", "sample_id": [ "GSM567797", "GSM567800", "GSM567804" ], "type": "time", "id": "GDS4257_1" }, { "dataset_id": "GDS4257", "description": "12 day", "sample_id": [ "GSM567801", "GSM567802", "GSM567805", "GSM567806" ], "type": "time", "id": "GDS4257_2" }, { "dataset_id": "GDS4257", "description": "15 day", "sample_id": [ "GSM567795", "GSM567796", "GSM567803", "GSM567807" ], "type": "time", "id": "GDS4257_3" }, { "dataset_id": "GDS4257", "description": "21 day", "sample_id": [ "GSM567798", "GSM567799", "GSM636940", "GSM636941", "GSM636942" ], "type": "time", "id": "GDS4257_4" }, { "dataset_id": "GDS4257", "description": "control", "sample_id": [ "GSM567797", "GSM567800", "GSM567804" ], "type": "infection", "id": "GDS4257_5" }, { "dataset_id": "GDS4257", "description": "M.tuberculosis", "sample_id": [ "GSM567801", "GSM567802", "GSM567805", "GSM567806", "GSM567795", "GSM567796", "GSM567803", "GSM567807", "GSM567798", "GSM567799", "GSM636940", "GSM636941", "GSM636942" ], "type": "infection", "id": "GDS4257_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4257", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4257.tab", "compression": "gz" } ], [ [ "GDS4258.tab" ], { "title": "THP-1 macrophage-like cells response to W-Beijing Mycobacterium tuberculosis strains: time course", "description": "Temporal analysis of macrophage-like THP-1 cell line infected by Mycobacterium tuberculosis (Mtb) W-Beijing strains and H37Rv. Mtb W-Beijing sublineages are highly virulent, prevalent and genetically diverse. Results provide insight into host macrophage immune response to Mtb W-Beijing strains.", "type": "Expression profiling by array", "pubmed_id": "22675550", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE29628", "order": "none", "update_date": "Oct 09 2012", "subsets": [ { "dataset_id": "GDS4258", "description": "non-infected", "sample_id": [ "GSM734300" ], "type": "infection", "id": "GDS4258_1" }, { "dataset_id": "GDS4258", "description": "Mtb W-Beijing", "sample_id": [ "GSM734301", "GSM734302", "GSM734303", "GSM734304", "GSM734305", "GSM734306", "GSM734307", "GSM734308", "GSM734309", "GSM734310", "GSM734311", "GSM734312", "GSM734313", "GSM734314", "GSM734315", "GSM734316", "GSM734317", "GSM734318", "GSM734319", "GSM734320", "GSM734321", "GSM734322", "GSM734323", "GSM734324", "GSM734325", "GSM734326", "GSM734327", "GSM734328", "GSM734329", "GSM734330", "GSM734337", "GSM734338", "GSM734339" ], "type": "infection", "id": "GDS4258_2" }, { "dataset_id": "GDS4258", "description": "Mtb Reference", "sample_id": [ "GSM734331", "GSM734332", "GSM734333", "GSM734334", "GSM734335", "GSM734336" ], "type": "infection", "id": "GDS4258_3" }, { "dataset_id": "GDS4258", "description": "na", "sample_id": [ "GSM734300" ], "type": "time", "id": "GDS4258_4" }, { "dataset_id": "GDS4258", "description": "4 hour", "sample_id": [ "GSM734310", "GSM734307", "GSM734313", "GSM734325", "GSM734304", "GSM734301", "GSM734337", "GSM734319", "GSM734334", "GSM734331", "GSM734322", "GSM734316", "GSM734328" ], "type": "time", "id": "GDS4258_5" }, { "dataset_id": "GDS4258", "description": "18 hour", "sample_id": [ "GSM734311", "GSM734308", "GSM734314", "GSM734326", "GSM734305", "GSM734302", "GSM734338", "GSM734320", "GSM734335", "GSM734332", "GSM734323", "GSM734317", "GSM734329" ], "type": "time", "id": "GDS4258_6" }, { "dataset_id": "GDS4258", "description": "48 hour", "sample_id": [ "GSM734312", "GSM734309", "GSM734315", "GSM734327", "GSM734306", "GSM734303", "GSM734339", "GSM734321", "GSM734336", "GSM734333", "GSM734324", "GSM734318", "GSM734330" ], "type": "time", "id": "GDS4258_7" }, { "dataset_id": "GDS4258", "description": "control", "sample_id": [ "GSM734300" ], "type": "strain", "id": "GDS4258_8" }, { "dataset_id": "GDS4258", "description": "R1.4", "sample_id": [ "GSM734301", "GSM734302", "GSM734303" ], "type": "strain", "id": "GDS4258_9" }, { "dataset_id": "GDS4258", "description": "R17.1", "sample_id": [ "GSM734304", "GSM734305", "GSM734306" ], "type": "strain", "id": "GDS4258_10" }, { "dataset_id": "GDS4258", "description": "ZA9.2", "sample_id": [ "GSM734307", "GSM734308", "GSM734309" ], "type": "strain", "id": "GDS4258_11" }, { "dataset_id": "GDS4258", "description": "ZA9.4", "sample_id": [ "GSM734310", "GSM734311", "GSM734312" ], "type": "strain", "id": "GDS4258_12" }, { "dataset_id": "GDS4258", "description": "R19.4", "sample_id": [ "GSM734313", "GSM734314", "GSM734315" ], "type": "strain", "id": "GDS4258_13" }, { "dataset_id": "GDS4258", "description": "CHN50.1", "sample_id": [ "GSM734316", "GSM734317", "GSM734318" ], "type": "strain", "id": "GDS4258_14" }, { "dataset_id": "GDS4258", "description": "MAD2.1", "sample_id": [ "GSM734319", "GSM734320", "GSM734321" ], "type": "strain", "id": "GDS4258_15" }, { "dataset_id": "GDS4258", "description": "CHN50.2", "sample_id": [ "GSM734322", "GSM734323", "GSM734324" ], "type": "strain", "id": "GDS4258_16" }, { "dataset_id": "GDS4258", "description": "R17.3", "sample_id": [ "GSM734325", "GSM734326", "GSM734327" ], "type": "strain", "id": "GDS4258_17" }, { "dataset_id": "GDS4258", "description": "19.5", "sample_id": [ "GSM734328", "GSM734329", "GSM734330" ], "type": "strain", "id": "GDS4258_18" }, { "dataset_id": "GDS4258", "description": "H37Rv", "sample_id": [ "GSM734331", "GSM734332", "GSM734333", "GSM734334", "GSM734335", "GSM734336" ], "type": "strain", "id": "GDS4258_19" }, { "dataset_id": "GDS4258", "description": "MAD2.2", "sample_id": [ "GSM734337", "GSM734338", "GSM734339" ], "type": "strain", "id": "GDS4258_20" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4258", "version": 1.0, "instances": "40", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4258.tab", "compression": "gz" } ], [ [ "GDS4259.tab" ], { "title": "Malawian children with mild malaria following an episode of severe malaria: peripheral whole blood", "description": "Analysis of paired peripheral blood samples from 5 children who initially presented with severe malaria then 1 month later with mild malaria. Results provide insight into molecular mechanisms underlying mild versus severe disease presentations.", "type": "Expression profiling by array", "pubmed_id": "22232187", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE33811", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4259", "description": "Patient 1", "sample_id": [ "GSM836195", "GSM836196" ], "type": "individual", "id": "GDS4259_1" }, { "dataset_id": "GDS4259", "description": "Patient 2", "sample_id": [ "GSM836197", "GSM836198" ], "type": "individual", "id": "GDS4259_2" }, { "dataset_id": "GDS4259", "description": "Patient 3", "sample_id": [ "GSM836199", "GSM836200" ], "type": "individual", "id": "GDS4259_3" }, { "dataset_id": "GDS4259", "description": "Patient 4", "sample_id": [ "GSM836201", "GSM836202" ], "type": "individual", "id": "GDS4259_4" }, { "dataset_id": "GDS4259", "description": "Patient 5", "sample_id": [ "GSM836203", "GSM836204" ], "type": "individual", "id": "GDS4259_5" }, { "dataset_id": "GDS4259", "description": "severe malaria", "sample_id": [ "GSM836195", "GSM836197", "GSM836199", "GSM836201", "GSM836203" ], "type": "disease state", "id": "GDS4259_6" }, { "dataset_id": "GDS4259", "description": "mild malaria", "sample_id": [ "GSM836196", "GSM836198", "GSM836200", "GSM836202", "GSM836204" ], "type": "disease state", "id": "GDS4259_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4259", "version": 1.0, "instances": "10", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4259.tab", "compression": "gz" } ], [ [ "GDS426.tab" ], { "title": "Normal human tissue expression profiling (HG-U95E)", "description": "Analysis of gene expression in a variety of normal tissues. Samples typically composed of a pool of 10-25 individuals. Included as part of the GeneNote project.", "type": "Expression profiling by array", "pubmed_id": "15388519", "platform": "GPL95", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12639", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE803", "order": "none", "update_date": "Nov 11 2003", "subsets": [ { "dataset_id": "GDS426", "description": "bone marrow", "sample_id": [ "GSM12638", "GSM12727" ], "type": "tissue", "id": "GDS426_1" }, { "dataset_id": "GDS426", "description": "liver", "sample_id": [ "GSM12643", "GSM12722" ], "type": "tissue", "id": "GDS426_2" }, { "dataset_id": "GDS426", "description": "heart", "sample_id": [ "GSM12648", "GSM12668" ], "type": "tissue", "id": "GDS426_3" }, { "dataset_id": "GDS426", "description": "spleen", "sample_id": [ "GSM12653", "GSM12673" ], "type": "tissue", "id": "GDS426_4" }, { "dataset_id": "GDS426", "description": "lung", "sample_id": [ "GSM12658", "GSM12702" ], "type": "tissue", "id": "GDS426_5" }, { "dataset_id": "GDS426", "description": "kidney", "sample_id": [ "GSM12663", "GSM12732" ], "type": "tissue", "id": "GDS426_6" }, { "dataset_id": "GDS426", "description": "skeletal muscle", "sample_id": [ "GSM12678", "GSM12697" ], "type": "tissue", "id": "GDS426_7" }, { "dataset_id": "GDS426", "description": "thymus", "sample_id": [ "GSM12687", "GSM12717" ], "type": "tissue", "id": "GDS426_8" }, { "dataset_id": "GDS426", "description": "brain", "sample_id": [ "GSM12692", "GSM12712" ], "type": "tissue", "id": "GDS426_9" }, { "dataset_id": "GDS426", "description": "spinal cord", "sample_id": [ "GSM12682", "GSM12707" ], "type": "tissue", "id": "GDS426_10" }, { "dataset_id": "GDS426", "description": "prostate", "sample_id": [ "GSM12737", "GSM12747" ], "type": "tissue", "id": "GDS426_11" }, { "dataset_id": "GDS426", "description": "pancreas", "sample_id": [ "GSM12742", "GSM12752" ], "type": "tissue", "id": "GDS426_12" } ], "taxid": "9606", "genes": 10350, "aggregation_function": "mean", "name": "GDS426", "version": 1.0, "instances": "24", "variables": 10352, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS426.tab", "compression": "gz" } ], [ [ "GDS4260.tab" ], { "title": "Thiostrepton effect on malaria parasite", "description": "Analysis of ring stage Plasmodium falciparum at 5 % parasitaemia treated with 2 uM thiostrepton, an antibiotic with antimalarial activity. Results provide insight into molecular mechanisms underlying parasite responses to the drug.", "type": "Expression profiling by array", "pubmed_id": "21620902", "platform": "GPL1321", "platform_organism": [ "Plasmodium falciparum", "Anopheles gambiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "22769", "sample_organism": "Plasmodium falciparum", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE28701", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4260", "description": "control", "sample_id": [ "GSM710792", "GSM710793", "GSM710794" ], "type": "agent", "id": "GDS4260_1" }, { "dataset_id": "GDS4260", "description": "thiostrepton", "sample_id": [ "GSM710795", "GSM710796", "GSM710797" ], "type": "agent", "id": "GDS4260_2" } ], "taxid": "5833", "genes": 18964, "aggregation_function": "mean", "name": "GDS4260", "version": 1.0, "instances": "6", "variables": 18966, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4260.tab", "compression": "gz" } ], [ [ "GDS4262.tab" ], { "title": "Oxidized low-density lipoprotein effect on LOX-1 overexpressing aortic endothelial cell line HAECT: time course", "description": "Analysis of oxidized-low-density lipoprotein receptor-1 (LOX-1)-overexpressing HAECT cells treated with OxLDL for up to 24 hrs. OxLDL is implicated as a proatherogenic factor. Results provide insight into molecular mechanisms underlying OxLDL-induced endothelial dysfunction and atherosclerosis.", "type": "Expression profiling by array", "pubmed_id": "19279231", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE13139", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4262", "description": "LOX-1 overexpression", "sample_id": [ "GSM329058", "GSM329073", "GSM329107", "GSM329067", "GSM329075", "GSM329072", "GSM329076", "GSM329094", "GSM329105", "GSM329057", "GSM329085", "GSM329089", "GSM329066", "GSM329086", "GSM329099", "GSM329062", "GSM329090", "GSM329079", "GSM329104", "GSM329096", "GSM329102", "GSM329081", "GSM329071", "GSM329078", "GSM329074", "GSM329100", "GSM329068" ], "type": "genotype/variation", "id": "GDS4262_1" }, { "dataset_id": "GDS4262", "description": "control", "sample_id": [ "GSM329055", "GSM329103", "GSM329108", "GSM329098", "GSM329059", "GSM329097", "GSM329095", "GSM329060", "GSM329063", "GSM329064", "GSM329061", "GSM329065", "GSM329101", "GSM329106", "GSM329083", "GSM329070", "GSM329082", "GSM329092", "GSM329088", "GSM329084", "GSM329080", "GSM329087", "GSM329091", "GSM329093", "GSM329056", "GSM329069", "GSM329077" ], "type": "genotype/variation", "id": "GDS4262_2" }, { "dataset_id": "GDS4262", "description": "untreated", "sample_id": [ "GSM329066", "GSM329086", "GSM329099", "GSM329062", "GSM329090", "GSM329079", "GSM329104", "GSM329096", "GSM329102", "GSM329081", "GSM329071", "GSM329078", "GSM329101", "GSM329106", "GSM329083", "GSM329070", "GSM329082", "GSM329092", "GSM329088", "GSM329084", "GSM329080", "GSM329087", "GSM329091", "GSM329093", "GSM329074", "GSM329100", "GSM329068", "GSM329056", "GSM329069", "GSM329077" ], "type": "agent", "id": "GDS4262_3" }, { "dataset_id": "GDS4262", "description": "OxLDL", "sample_id": [ "GSM329058", "GSM329073", "GSM329107", "GSM329067", "GSM329075", "GSM329072", "GSM329076", "GSM329094", "GSM329105", "GSM329057", "GSM329085", "GSM329089", "GSM329055", "GSM329103", "GSM329108", "GSM329098", "GSM329059", "GSM329097", "GSM329095", "GSM329060", "GSM329063", "GSM329064", "GSM329061", "GSM329065" ], "type": "agent", "id": "GDS4262_4" }, { "dataset_id": "GDS4262", "description": "0 hour", "sample_id": [ "GSM329056", "GSM329069", "GSM329077", "GSM329068", "GSM329074", "GSM329100" ], "type": "time", "id": "GDS4262_5" }, { "dataset_id": "GDS4262", "description": "2 hour", "sample_id": [ "GSM329070", "GSM329082", "GSM329092", "GSM329059", "GSM329097", "GSM329098", "GSM329062", "GSM329079", "GSM329090", "GSM329067", "GSM329072", "GSM329075" ], "type": "time", "id": "GDS4262_6" }, { "dataset_id": "GDS4262", "description": "6 hour", "sample_id": [ "GSM329083", "GSM329101", "GSM329106", "GSM329055", "GSM329103", "GSM329108", "GSM329066", "GSM329086", "GSM329099", "GSM329058", "GSM329073", "GSM329107" ], "type": "time", "id": "GDS4262_7" }, { "dataset_id": "GDS4262", "description": "12 hour", "sample_id": [ "GSM329087", "GSM329091", "GSM329093", "GSM329061", "GSM329064", "GSM329065", "GSM329071", "GSM329078", "GSM329081", "GSM329057", "GSM329085", "GSM329089" ], "type": "time", "id": "GDS4262_8" }, { "dataset_id": "GDS4262", "description": "24 hour", "sample_id": [ "GSM329080", "GSM329084", "GSM329088", "GSM329060", "GSM329063", "GSM329095", "GSM329096", "GSM329102", "GSM329104", "GSM329076", "GSM329094", "GSM329105" ], "type": "time", "id": "GDS4262_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4262", "version": 1.0, "instances": "54", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4262.tab", "compression": "gz" } ], [ [ "GDS4263.tab" ], { "title": "Age effect on healthy composite bone marrow", "description": "Analysis of composite bone marrow (BM) from healthy children and adults. Normal BM constitutes a complex tissue of blood progenitor cells changing in composition with age. Results provide insight into molecular mechanisms associated with changes in the total precursor B-cell compartment with age.", "type": "Expression profiling by array", "pubmed_id": "20121553", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE11504", "order": "ordered", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4263", "description": "2 months", "sample_id": [ "GSM289612" ], "type": "age", "id": "GDS4263_1" }, { "dataset_id": "GDS4263", "description": "3 months", "sample_id": [ "GSM289613" ], "type": "age", "id": "GDS4263_2" }, { "dataset_id": "GDS4263", "description": "9 months", "sample_id": [ "GSM289614" ], "type": "age", "id": "GDS4263_3" }, { "dataset_id": "GDS4263", "description": "20 months", "sample_id": [ "GSM289615" ], "type": "age", "id": "GDS4263_4" }, { "dataset_id": "GDS4263", "description": "23 months", "sample_id": [ "GSM289616" ], "type": "age", "id": "GDS4263_5" }, { "dataset_id": "GDS4263", "description": "32 months", "sample_id": [ "GSM289617" ], "type": "age", "id": "GDS4263_6" }, { "dataset_id": "GDS4263", "description": "39 months", "sample_id": [ "GSM289618" ], "type": "age", "id": "GDS4263_7" }, { "dataset_id": "GDS4263", "description": "57 months", "sample_id": [ "GSM289619" ], "type": "age", "id": "GDS4263_8" }, { "dataset_id": "GDS4263", "description": "59 months", "sample_id": [ "GSM289620" ], "type": "age", "id": "GDS4263_9" }, { "dataset_id": "GDS4263", "description": "65 months", "sample_id": [ "GSM289621" ], "type": "age", "id": "GDS4263_10" }, { "dataset_id": "GDS4263", "description": "74 months", "sample_id": [ "GSM289622" ], "type": "age", "id": "GDS4263_11" }, { "dataset_id": "GDS4263", "description": "78 months", "sample_id": [ "GSM289623" ], "type": "age", "id": "GDS4263_12" }, { "dataset_id": "GDS4263", "description": "88 months", "sample_id": [ "GSM289624" ], "type": "age", "id": "GDS4263_13" }, { "dataset_id": "GDS4263", "description": "112 months", "sample_id": [ "GSM289625" ], "type": "age", "id": "GDS4263_14" }, { "dataset_id": "GDS4263", "description": "119 months", "sample_id": [ "GSM289626" ], "type": "age", "id": "GDS4263_15" }, { "dataset_id": "GDS4263", "description": "126 months", "sample_id": [ "GSM289627" ], "type": "age", "id": "GDS4263_16" }, { "dataset_id": "GDS4263", "description": "129 months", "sample_id": [ "GSM289628" ], "type": "age", "id": "GDS4263_17" }, { "dataset_id": "GDS4263", "description": "144 months", "sample_id": [ "GSM289629" ], "type": "age", "id": "GDS4263_18" }, { "dataset_id": "GDS4263", "description": "168 months", "sample_id": [ "GSM289630" ], "type": "age", "id": "GDS4263_19" }, { "dataset_id": "GDS4263", "description": "197 months", "sample_id": [ "GSM289631" ], "type": "age", "id": "GDS4263_20" }, { "dataset_id": "GDS4263", "description": "313 months", "sample_id": [ "GSM289632" ], "type": "age", "id": "GDS4263_21" }, { "dataset_id": "GDS4263", "description": "338 months", "sample_id": [ "GSM289633" ], "type": "age", "id": "GDS4263_22" }, { "dataset_id": "GDS4263", "description": "347 months", "sample_id": [ "GSM289634" ], "type": "age", "id": "GDS4263_23" }, { "dataset_id": "GDS4263", "description": "348 months", "sample_id": [ "GSM289635" ], "type": "age", "id": "GDS4263_24" }, { "dataset_id": "GDS4263", "description": "352 months", "sample_id": [ "GSM289636" ], "type": "age", "id": "GDS4263_25" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4263", "version": 1.0, "instances": "25", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4263.tab", "compression": "gz" } ], [ [ "GDS4264.tab" ], { "title": "Balanced and unbalanced chromosomal translocations: lymphoblastoid cell lines", "description": "Analysis of lymphoblastoid cell lines established from individuals with the t(11;22)(q23;q11)-balanced translocation (carriers) or the +der(22)t(11;22)(q23;q11) karyotype (Emanuel syndrome patients). Results provide insight into the effect of balanced chromosomal rearrangements on the transcriptome.", "type": "Expression profiling by array", "pubmed_id": "20212020", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE13122", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4264", "description": "female", "sample_id": [ "GSM328669", "GSM328673", "GSM328675", "GSM328676", "GSM328677", "GSM328679", "GSM328681", "GSM328657", "GSM328672", "GSM328678", "GSM328680", "GSM328658", "GSM328660", "GSM328661", "GSM328668", "GSM328670", "GSM328666", "GSM328674" ], "type": "gender", "id": "GDS4264_1" }, { "dataset_id": "GDS4264", "description": "male", "sample_id": [ "GSM328664", "GSM328682", "GSM328671", "GSM328659", "GSM328662", "GSM328667", "GSM328663", "GSM328665" ], "type": "gender", "id": "GDS4264_2" }, { "dataset_id": "GDS4264", "description": "normal karyotype", "sample_id": [ "GSM328659", "GSM328662", "GSM328667", "GSM328671", "GSM328657", "GSM328658", "GSM328660", "GSM328661", "GSM328668", "GSM328670", "GSM328672", "GSM328678", "GSM328680" ], "type": "genotype/variation", "id": "GDS4264_3" }, { "dataset_id": "GDS4264", "description": "balanced translocation", "sample_id": [ "GSM328682", "GSM328664", "GSM328669", "GSM328673", "GSM328675", "GSM328676", "GSM328677", "GSM328681", "GSM328679" ], "type": "genotype/variation", "id": "GDS4264_4" }, { "dataset_id": "GDS4264", "description": "unbalanced translocation", "sample_id": [ "GSM328663", "GSM328665", "GSM328666", "GSM328674" ], "type": "genotype/variation", "id": "GDS4264_5" }, { "dataset_id": "GDS4264", "description": "46, XX Control", "sample_id": [ "GSM328657", "GSM328658", "GSM328660", "GSM328661", "GSM328668", "GSM328670", "GSM328672", "GSM328678", "GSM328680" ], "type": "other", "id": "GDS4264_6" }, { "dataset_id": "GDS4264", "description": "46, XY Control", "sample_id": [ "GSM328659", "GSM328662", "GSM328667", "GSM328671" ], "type": "other", "id": "GDS4264_7" }, { "dataset_id": "GDS4264", "description": "46,XX,t(11;22)(q23;q11)", "sample_id": [ "GSM328673", "GSM328675", "GSM328676", "GSM328677", "GSM328681", "GSM328679" ], "type": "other", "id": "GDS4264_8" }, { "dataset_id": "GDS4264", "description": "46,XX,t(11;22)(q23;q11)pat", "sample_id": [ "GSM328669" ], "type": "other", "id": "GDS4264_9" }, { "dataset_id": "GDS4264", "description": "46,XY,t(11;22)(q23;q11)", "sample_id": [ "GSM328664" ], "type": "other", "id": "GDS4264_10" }, { "dataset_id": "GDS4264", "description": "46,XY,t(11;22)(q23;q11)pat", "sample_id": [ "GSM328682" ], "type": "other", "id": "GDS4264_11" }, { "dataset_id": "GDS4264", "description": "47,XX,+der(22)t(11;22)(q23;q11)", "sample_id": [ "GSM328666", "GSM328674" ], "type": "other", "id": "GDS4264_12" }, { "dataset_id": "GDS4264", "description": "47,XY,+der(22)t(11;22)(q23;q11)", "sample_id": [ "GSM328663", "GSM328665" ], "type": "other", "id": "GDS4264_13" }, { "dataset_id": "GDS4264", "description": "healthy", "sample_id": [ "GSM328659", "GSM328662", "GSM328667", "GSM328671", "GSM328657", "GSM328658", "GSM328660", "GSM328661", "GSM328668", "GSM328670", "GSM328672", "GSM328678", "GSM328680" ], "type": "disease state", "id": "GDS4264_14" }, { "dataset_id": "GDS4264", "description": "carrier", "sample_id": [ "GSM328682", "GSM328664", "GSM328669", "GSM328673", "GSM328675", "GSM328676", "GSM328677", "GSM328679", "GSM328681" ], "type": "disease state", "id": "GDS4264_15" }, { "dataset_id": "GDS4264", "description": "Emanuel syndrome", "sample_id": [ "GSM328663", "GSM328665", "GSM328666", "GSM328674" ], "type": "disease state", "id": "GDS4264_16" }, { "dataset_id": "GDS4264", "description": "4 days", "sample_id": [ "GSM328665" ], "type": "age", "id": "GDS4264_17" }, { "dataset_id": "GDS4264", "description": "9 months", "sample_id": [ "GSM328666" ], "type": "age", "id": "GDS4264_18" }, { "dataset_id": "GDS4264", "description": "4 years", "sample_id": [ "GSM328661" ], "type": "age", "id": "GDS4264_19" }, { "dataset_id": "GDS4264", "description": "6 years", "sample_id": [ "GSM328659" ], "type": "age", "id": "GDS4264_20" }, { "dataset_id": "GDS4264", "description": "14 years", "sample_id": [ "GSM328663" ], "type": "age", "id": "GDS4264_21" }, { "dataset_id": "GDS4264", "description": "15 years", "sample_id": [ "GSM328667" ], "type": "age", "id": "GDS4264_22" }, { "dataset_id": "GDS4264", "description": "17 years", "sample_id": [ "GSM328680", "GSM328682" ], "type": "age", "id": "GDS4264_23" }, { "dataset_id": "GDS4264", "description": "20 years", "sample_id": [ "GSM328671" ], "type": "age", "id": "GDS4264_24" }, { "dataset_id": "GDS4264", "description": "22 years", "sample_id": [ "GSM328669" ], "type": "age", "id": "GDS4264_25" }, { "dataset_id": "GDS4264", "description": "23 years", "sample_id": [ "GSM328675" ], "type": "age", "id": "GDS4264_26" }, { "dataset_id": "GDS4264", "description": "24 years", "sample_id": [ "GSM328658" ], "type": "age", "id": "GDS4264_27" }, { "dataset_id": "GDS4264", "description": "26 years", "sample_id": [ "GSM328668" ], "type": "age", "id": "GDS4264_28" }, { "dataset_id": "GDS4264", "description": "29 years", "sample_id": [ "GSM328678", "GSM328681" ], "type": "age", "id": "GDS4264_29" }, { "dataset_id": "GDS4264", "description": "31 years", "sample_id": [ "GSM328674" ], "type": "age", "id": "GDS4264_30" }, { "dataset_id": "GDS4264", "description": "38 years", "sample_id": [ "GSM328679" ], "type": "age", "id": "GDS4264_31" }, { "dataset_id": "GDS4264", "description": "39 years", "sample_id": [ "GSM328660" ], "type": "age", "id": "GDS4264_32" }, { "dataset_id": "GDS4264", "description": "42 years", "sample_id": [ "GSM328670" ], "type": "age", "id": "GDS4264_33" }, { "dataset_id": "GDS4264", "description": "43 years", "sample_id": [ "GSM328672" ], "type": "age", "id": "GDS4264_34" }, { "dataset_id": "GDS4264", "description": "49 years", "sample_id": [ "GSM328673" ], "type": "age", "id": "GDS4264_35" }, { "dataset_id": "GDS4264", "description": "50 years", "sample_id": [ "GSM328676" ], "type": "age", "id": "GDS4264_36" }, { "dataset_id": "GDS4264", "description": "60 years", "sample_id": [ "GSM328664" ], "type": "age", "id": "GDS4264_37" }, { "dataset_id": "GDS4264", "description": "61 years", "sample_id": [ "GSM328662" ], "type": "age", "id": "GDS4264_38" }, { "dataset_id": "GDS4264", "description": "63 years", "sample_id": [ "GSM328657" ], "type": "age", "id": "GDS4264_39" }, { "dataset_id": "GDS4264", "description": "66 years", "sample_id": [ "GSM328677" ], "type": "age", "id": "GDS4264_40" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4264", "version": 1.0, "instances": "26", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4264.tab", "compression": "gz" } ], [ [ "GDS4265.tab" ], { "title": "Chronic obstructive pulmonary disease in ex-smokers: sputum", "description": "Analysis of sputum from ex-smokers with moderate (stage 2) or severe (stages 3, 4) chronic obstructive pulmonary disease (COPD). Induced sputum contains inflammatory cells, predominantly neutrophils and macrophages. Results provide insight into molecular mechanisms underlying COPD progression.", "type": "Expression profiling by array", "pubmed_id": "21441172", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "143", "value_type": "count", "reference_series": "GSE22148", "order": "none", "update_date": "Mar 18 2013", "subsets": [ { "dataset_id": "GDS4265", "description": "COPD Stage 2", "sample_id": [ "GSM550785", "GSM550799", "GSM550800", "GSM550801", "GSM550804", "GSM550806", "GSM550807", "GSM550808", "GSM550809", "GSM550810", "GSM550811", "GSM550786", "GSM550813", "GSM550814", "GSM550815", "GSM550816", "GSM550817", "GSM550818", "GSM550819", "GSM550820", "GSM550821", "GSM550822", "GSM550788", "GSM550826", "GSM550832", "GSM550833", "GSM550835", "GSM550836", "GSM550837", "GSM550838", "GSM550841", "GSM550842", "GSM550846", "GSM550789", "GSM550849", "GSM550850", "GSM550851", "GSM550852", "GSM550853", "GSM550855", "GSM550856", "GSM550861", "GSM550863", "GSM550864", "GSM550790", "GSM550866", "GSM550867", "GSM550885", "GSM550886", "GSM550887", "GSM550889", "GSM550894", "GSM550897", "GSM550903", "GSM550905", "GSM550791", "GSM550906", "GSM550907", "GSM550909", "GSM550911", "GSM550913", "GSM550915", "GSM550917", "GSM550919", "GSM550921", "GSM550792", "GSM550924", "GSM550926", "GSM550927", "GSM550796", "GSM550797" ], "type": "disease state", "id": "GDS4265_1" }, { "dataset_id": "GDS4265", "description": "COPD Stage 3", "sample_id": [ "GSM550787", "GSM550825", "GSM550827", "GSM550828", "GSM550829", "GSM550830", "GSM550834", "GSM550839", "GSM550840", "GSM550843", "GSM550844", "GSM550793", "GSM550845", "GSM550848", "GSM550854", "GSM550857", "GSM550858", "GSM550859", "GSM550862", "GSM550865", "GSM550868", "GSM550869", "GSM550794", "GSM550870", "GSM550871", "GSM550872", "GSM550873", "GSM550874", "GSM550876", "GSM550877", "GSM550878", "GSM550879", "GSM550882", "GSM550795", "GSM550888", "GSM550890", "GSM550891", "GSM550892", "GSM550893", "GSM550895", "GSM550896", "GSM550898", "GSM550899", "GSM550900", "GSM550798", "GSM550901", "GSM550902", "GSM550904", "GSM550908", "GSM550912", "GSM550914", "GSM550918", "GSM550922", "GSM550923", "GSM550925", "GSM550803", "GSM550805", "GSM550823", "GSM550824" ], "type": "disease state", "id": "GDS4265_2" }, { "dataset_id": "GDS4265", "description": "COPD Stage 4", "sample_id": [ "GSM550802", "GSM550884", "GSM550910", "GSM550916", "GSM550920", "GSM550812", "GSM550831", "GSM550847", "GSM550860", "GSM550875", "GSM550880", "GSM550881", "GSM550883" ], "type": "disease state", "id": "GDS4265_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4265", "version": 1.0, "instances": "143", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4265.tab", "compression": "gz" } ], [ [ "GDS4266.tab" ], { "title": "Tolerant renal transplant recipients: peripheral whole blood", "description": "Analysis of whole blood from tolerant renal transplant recipients (i.e., with stable graft function and receiving no immunosuppressive drugs for >1 year) and from recipients stable on immunosuppressive drugs. Results provide insight into molecular mechanisms underlying renal transplant tolerance.", "type": "Expression profiling by array", "pubmed_id": "20501946", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "58", "value_type": "transformed count", "reference_series": "GSE22229", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4266", "description": "Tolerant", "sample_id": [ "GSM553595", "GSM553596", "GSM553597", "GSM553598", "GSM553599", "GSM553600", "GSM553601", "GSM553602", "GSM553603", "GSM553604", "GSM553605", "GSM553606", "GSM553607", "GSM553608", "GSM553609", "GSM553610", "GSM553611", "GSM553612", "GSM553613" ], "type": "individual", "id": "GDS4266_1" }, { "dataset_id": "GDS4266", "description": "Standard Immunotherapy", "sample_id": [ "GSM553614", "GSM553615", "GSM553616", "GSM553617", "GSM553618", "GSM553619", "GSM553620", "GSM553621", "GSM553622", "GSM553623", "GSM553624", "GSM553625", "GSM553626", "GSM553627", "GSM553628", "GSM553629", "GSM553630", "GSM553631", "GSM553632", "GSM553633", "GSM553634", "GSM553635", "GSM553636", "GSM553637", "GSM553638", "GSM553639", "GSM553640" ], "type": "individual", "id": "GDS4266_2" }, { "dataset_id": "GDS4266", "description": "Healthy control", "sample_id": [ "GSM553641", "GSM553642", "GSM553643", "GSM553644", "GSM553645", "GSM553646", "GSM553647", "GSM553648", "GSM553649", "GSM553650", "GSM553651", "GSM553652" ], "type": "individual", "id": "GDS4266_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4266", "version": 1.0, "instances": "58", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4266.tab", "compression": "gz" } ], [ [ "GDS4267.tab" ], { "title": "Systemic juvenile idiopathic arthritis and non-systemic JIA subtypes: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from patients with systemic juvenile idiopathic arthritis (sJIA) or non-sJIA. sJIA patients have significantly increased expansion of immature PBMC subpopulations, including CD34+ cells. Results provide insight into molecular mechanisms underlying sJIA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20576155", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "154", "value_type": "transformed count", "reference_series": "GSE21521", "order": "none", "update_date": "Mar 05 2014", "subsets": [ { "dataset_id": "GDS4267", "description": "systemic JIA", "sample_id": [ "GSM340358", "GSM340359", "GSM340361", "GSM340362", "GSM340363", "GSM340364", "GSM340365", "GSM340366", "GSM340367", "GSM340368", "GSM340369", "GSM340370", "GSM340371", "GSM340372", "GSM340373", "GSM340375", "GSM340376", "GSM340378" ], "type": "disease state", "id": "GDS4267_1" }, { "dataset_id": "GDS4267", "description": "non-systemic JIA", "sample_id": [ "GSM340243", "GSM340244", "GSM340246", "GSM340247", "GSM340248", "GSM340249", "GSM340250", "GSM340251", "GSM340252", "GSM340253", "GSM340254", "GSM340256", "GSM340258", "GSM340259", "GSM340260", "GSM340261", "GSM340262", "GSM340263", "GSM340264", "GSM340265", "GSM340266", "GSM340267", "GSM340268", "GSM340269", "GSM340270", "GSM340272", "GSM340273", "GSM340275", "GSM340276", "GSM340277", "GSM340278", "GSM340279", "GSM340282", "GSM340284", "GSM340285", "GSM340286", "GSM340287", "GSM340288", "GSM340289", "GSM340290", "GSM340291", "GSM340293", "GSM340294", "GSM340296", "GSM340297", "GSM340298", "GSM340299", "GSM340301", "GSM340303", "GSM340304", "GSM340306", "GSM340307", "GSM340310", "GSM340314", "GSM340315", "GSM340317", "GSM340318", "GSM340319", "GSM340320", "GSM340321", "GSM340322", "GSM340324", "GSM340328", "GSM340330", "GSM340332", "GSM340333", "GSM340336", "GSM340337", "GSM340338", "GSM340339", "GSM340340", "GSM340341", "GSM340343", "GSM340344", "GSM340346", "GSM340347", "GSM340348", "GSM340349", "GSM340350", "GSM340351", "GSM340354", "GSM340356", "GSM340357", "GSM348181", "GSM348182", "GSM348183", "GSM348184", "GSM348185", "GSM348186", "GSM348187", "GSM348188", "GSM348189", "GSM348190", "GSM348191", "GSM348193", "GSM348194", "GSM348195", "GSM348196", "GSM537574", "GSM537578", "GSM537580", "GSM537581", "GSM537585", "GSM537594", "GSM537596", "GSM537597", "GSM537602" ], "type": "disease state", "id": "GDS4267_2" }, { "dataset_id": "GDS4267", "description": "healthy", "sample_id": [ "GSM340184", "GSM340185", "GSM340186", "GSM340187", "GSM340189", "GSM340190", "GSM340191", "GSM340192", "GSM340193", "GSM340194", "GSM340195", "GSM340196", "GSM340197", "GSM340198", "GSM340199", "GSM340200", "GSM340201", "GSM340202", "GSM340203", "GSM340204", "GSM340205", "GSM340206", "GSM340207", "GSM340237", "GSM340238", "GSM340239", "GSM340240", "GSM340241", "GSM340242" ], "type": "disease state", "id": "GDS4267_3" }, { "dataset_id": "GDS4267", "description": "subgroup: systemic", "sample_id": [ "GSM340358", "GSM340359", "GSM340361", "GSM340362", "GSM340363", "GSM340364", "GSM340365", "GSM340366", "GSM340367", "GSM340368", "GSM340369", "GSM340370", "GSM340371", "GSM340372", "GSM340373", "GSM340375", "GSM340376", "GSM340378" ], "type": "other", "id": "GDS4267_4" }, { "dataset_id": "GDS4267", "description": "subgroup: enthesitis-related", "sample_id": [ "GSM340243", "GSM340244", "GSM340246", "GSM340247", "GSM340248", "GSM340249", "GSM340250", "GSM340251", "GSM340252", "GSM340253", "GSM340254", "GSM340256", "GSM340258", "GSM340259", "GSM340260", "GSM340261", "GSM340262", "GSM340263", "GSM340264", "GSM340265", "GSM340266", "GSM340267", "GSM340268", "GSM340269", "GSM340270", "GSM537574" ], "type": "other", "id": "GDS4267_5" }, { "dataset_id": "GDS4267", "description": "subgroup: extended oligo", "sample_id": [ "GSM537580", "GSM537581" ], "type": "other", "id": "GDS4267_6" }, { "dataset_id": "GDS4267", "description": "subgroup: oligoarticular", "sample_id": [ "GSM340272", "GSM340273", "GSM340275", "GSM340276", "GSM340277", "GSM340278", "GSM340279", "GSM340282", "GSM340284", "GSM340285", "GSM340286", "GSM340287", "GSM340288", "GSM340289", "GSM340290", "GSM340291", "GSM340293", "GSM340294", "GSM340296", "GSM340297", "GSM340298", "GSM340299", "GSM340301", "GSM340303", "GSM340304", "GSM340306", "GSM340307", "GSM340310" ], "type": "other", "id": "GDS4267_7" }, { "dataset_id": "GDS4267", "description": "subgroup: RF- polyarthritis", "sample_id": [ "GSM348183", "GSM348191", "GSM348193", "GSM537578", "GSM340314", "GSM340315", "GSM340317", "GSM340318", "GSM340319", "GSM340320", "GSM340321", "GSM340322", "GSM340324", "GSM340328", "GSM340330", "GSM340332", "GSM340333", "GSM340336", "GSM340337", "GSM340338", "GSM340339", "GSM340340", "GSM340341", "GSM340343", "GSM340344", "GSM340346", "GSM340347", "GSM340348", "GSM340349", "GSM340350", "GSM340351", "GSM340354", "GSM340356", "GSM340357" ], "type": "other", "id": "GDS4267_8" }, { "dataset_id": "GDS4267", "description": "subgroup: RF+ polyarthritis", "sample_id": [ "GSM348181", "GSM348182", "GSM348184", "GSM348185", "GSM348186", "GSM348187", "GSM348188", "GSM348189", "GSM348190", "GSM348194", "GSM348195", "GSM348196", "GSM537585", "GSM537594", "GSM537596" ], "type": "other", "id": "GDS4267_9" }, { "dataset_id": "GDS4267", "description": "subgroup: psoriatic", "sample_id": [ "GSM537597", "GSM537602" ], "type": "other", "id": "GDS4267_10" }, { "dataset_id": "GDS4267", "description": "subgroup: control", "sample_id": [ "GSM340184", "GSM340185", "GSM340186", "GSM340187", "GSM340189", "GSM340190", "GSM340191", "GSM340192", "GSM340193", "GSM340194", "GSM340195", "GSM340196", "GSM340197", "GSM340198", "GSM340199", "GSM340200", "GSM340201", "GSM340202", "GSM340203", "GSM340204", "GSM340205", "GSM340206", "GSM340207", "GSM340237", "GSM340238", "GSM340239", "GSM340240", "GSM340241", "GSM340242" ], "type": "other", "id": "GDS4267_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4267", "version": 1.0, "instances": "154", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4267.tab", "compression": "gz" } ], [ [ "GDS4268.tab" ], { "title": "Scleroderma-associated pulmonary hypertension: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from scleroderma patients with pulmonary arterial hypertension (PAH). PAH is a common, potentially fatal complication of chronic systemic scleroderma. Results provide insight into the molecular mechanisms underlying scleroderma-related PAH.", "type": "Expression profiling by array", "pubmed_id": "20973920", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "count", "reference_series": "GSE22356", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4268", "description": "Scleroderma with Pulmonary Hypertension", "sample_id": [ "GSM556423", "GSM556424", "GSM556425", "GSM556426", "GSM556427", "GSM556428", "GSM556429", "GSM556430", "GSM556431", "GSM556432" ], "type": "disease state", "id": "GDS4268_1" }, { "dataset_id": "GDS4268", "description": "Scleroderma without Pulmonary Hypertension", "sample_id": [ "GSM556413", "GSM556414", "GSM556415", "GSM556416", "GSM556417", "GSM556418", "GSM556419", "GSM556420", "GSM556421", "GSM556422" ], "type": "disease state", "id": "GDS4268_2" }, { "dataset_id": "GDS4268", "description": "Idiopathic Pulmonary Arterial Hypertension", "sample_id": [ "GSM556433", "GSM556434", "GSM556435", "GSM556436", "GSM556437", "GSM556438", "GSM556439", "GSM556440" ], "type": "disease state", "id": "GDS4268_3" }, { "dataset_id": "GDS4268", "description": "Normal (no pulmonary hypertension)", "sample_id": [ "GSM556441", "GSM556442", "GSM556443", "GSM556444", "GSM556445", "GSM556446", "GSM556447", "GSM556448", "GSM556449", "GSM556450" ], "type": "disease state", "id": "GDS4268_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4268", "version": 1.0, "instances": "38", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4268.tab", "compression": "gz" } ], [ [ "GDS4269.tab" ], { "title": "Transforming growth factor-beta effect on Hepatocellular carcinoma Huh-7 cell line", "description": "Analysis of Hepatocellular carcinoma (HCC) Huh-7 cells stimulated with transforming growth factor-beta (TGF-\u03b2). HCC cell line Huh-7 has intact WNT pathway components. Results provide insight into the role of TGF-\u03b2 in regulating WNT pathway activity in HCC cells.", "type": "Expression profiling by array", "pubmed_id": "19723656", "platform": "GPL3921", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE10393", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4269", "description": "TGF-\u03b2", "sample_id": [ "GSM262719", "GSM262720" ], "type": "agent", "id": "GDS4269_1" }, { "dataset_id": "GDS4269", "description": "control", "sample_id": [ "GSM262717", "GSM262718" ], "type": "agent", "id": "GDS4269_2" } ], "taxid": "9606", "genes": 13936, "aggregation_function": "mean", "name": "GDS4269", "version": 1.0, "instances": "4", "variables": 13938, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4269.tab", "compression": "gz" } ], [ [ "GDS427.tab" ], { "title": "Heart failure and rescue (Mu11K-B)", "description": "Analysis of left ventricular (LV) gene expression to uncover genomic changes associated with cardiomyopathy and/or its phenotypic rescue by the beta-adrenergic receptor kinase, betaARKc.", "type": "Expression profiling by array", "pubmed_id": "12865503", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "53", "value_type": "count", "reference_series": "GSE670", "order": "none", "update_date": "Nov 28 2003", "subsets": [ { "dataset_id": "GDS427", "description": "normal", "sample_id": [ "GSM10231", "GSM10232", "GSM10233", "GSM10234", "GSM10235", "GSM10236", "GSM10237", "GSM10238", "GSM10239", "GSM10240", "GSM10241", "GSM10242" ], "type": "disease state", "id": "GDS427_1" }, { "dataset_id": "GDS427", "description": "heart failure", "sample_id": [ "GSM10243", "GSM10244", "GSM10245", "GSM10246", "GSM10247", "GSM10248", "GSM10249", "GSM10250", "GSM10251", "GSM10252", "GSM10253", "GSM10254" ], "type": "disease state", "id": "GDS427_2" }, { "dataset_id": "GDS427", "description": "rescued heart failure (transgenic betaARKct)", "sample_id": [ "GSM10255", "GSM10256", "GSM10257", "GSM10258", "GSM10259", "GSM10260", "GSM10261", "GSM10262", "GSM10263", "GSM10264", "GSM10265", "GSM10266" ], "type": "disease state", "id": "GDS427_3" }, { "dataset_id": "GDS427", "description": "normal transgenic (transgenic betaARKct)", "sample_id": [ "GSM10267", "GSM10268", "GSM10269", "GSM10270", "GSM10271", "GSM10272" ], "type": "disease state", "id": "GDS427_4" }, { "dataset_id": "GDS427", "description": "advanced stage heart failure", "sample_id": [ "GSM10273", "GSM10274", "GSM10275", "GSM10276", "GSM10277", "GSM10278" ], "type": "disease state", "id": "GDS427_5" }, { "dataset_id": "GDS427", "description": "mild heart failure", "sample_id": [ "GSM10279", "GSM10280", "GSM10281", "GSM10282", "GSM10283" ], "type": "disease state", "id": "GDS427_6" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS427", "version": 1.0, "instances": "53", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS427.tab", "compression": "gz" } ], [ [ "GDS4270.tab" ], { "title": "Intravenous corticosteroid therapy effect on children with severe ulcerative colitis: peripheral blood", "description": "Analysis of peripheral blood from pediatric patients with severe ulcerative colitis (UC) on day 3 of intravenous corticosteroid (IVCS) therapy. Individual response to IVCS is variable. Results provide insight into the molecular mechanisms underlying response to IVCS in pediatric UC.", "type": "Expression profiling by array", "pubmed_id": "20941359", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE21231", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4270", "description": "Therapy responder", "sample_id": [ "GSM530849", "GSM530851", "GSM530852", "GSM530850", "GSM530857", "GSM530853", "GSM530839", "GSM530856", "GSM530854", "GSM530842", "GSM530848", "GSM530846", "GSM530855", "GSM530841", "GSM530838", "GSM530844", "GSM530847", "GSM530840", "GSM530843", "GSM530845" ], "type": "individual", "id": "GDS4270_1" }, { "dataset_id": "GDS4270", "description": "Therapy non-responder", "sample_id": [ "GSM530876", "GSM530877", "GSM530874", "GSM530869", "GSM530863", "GSM530870", "GSM530862", "GSM530859", "GSM530873", "GSM530871", "GSM530864", "GSM530867", "GSM530858", "GSM530872", "GSM530866", "GSM530865", "GSM530868", "GSM530861", "GSM530860", "GSM530875" ], "type": "individual", "id": "GDS4270_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4270", "version": 1.0, "instances": "40", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4270.tab", "compression": "gz" } ], [ [ "GDS4271.tab" ], { "title": "Infant biliary atresia: liver", "description": "Analysis of liver wedge biopsies from infants at diagnosis of biliary atresia (BA). The biopsies underwent histological scoring and were classified as inflammation or fibrosis. Results provide insight into the molecular mechanisms underlying stages of BA disease at diagnosis.", "type": "Expression profiling by array", "pubmed_id": "20465800", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE15235", "order": "none", "update_date": "Mar 17 2013", "subsets": [ { "dataset_id": "GDS4271", "description": "fibrosis", "sample_id": [ "GSM380382", "GSM380383", "GSM380384", "GSM380385", "GSM380386", "GSM380387", "GSM380388", "GSM380389", "GSM380390", "GSM380391", "GSM380392", "GSM380393", "GSM380394", "GSM380395", "GSM380396", "GSM380397", "GSM380398", "GSM380399", "GSM380400", "GSM380401", "GSM380402", "GSM380403", "GSM380404", "GSM380405", "GSM380406", "GSM380407" ], "type": "disease state", "id": "GDS4271_1" }, { "dataset_id": "GDS4271", "description": "inflammation", "sample_id": [ "GSM380408", "GSM380409", "GSM380410", "GSM380411", "GSM380412", "GSM380413", "GSM380414", "GSM380415", "GSM380416", "GSM380417", "GSM380418", "GSM380419", "GSM380420", "GSM380421", "GSM380422", "GSM380423", "GSM380424" ], "type": "disease state", "id": "GDS4271_2" }, { "dataset_id": "GDS4271", "description": "unclassified", "sample_id": [ "GSM380425", "GSM380426", "GSM380427", "GSM380428" ], "type": "disease state", "id": "GDS4271_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4271", "version": 1.0, "instances": "47", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4271.tab", "compression": "gz" } ], [ [ "GDS4272.tab" ], { "title": "Methotrexate effect on SPARKS CHARMS juvenile idiopathic arthritis cohort: peripheral blood mononuclear cells", "description": "Analysis of PBMC from 11 patients with juvenile idiopathic arthritis (JIA) following 6 months of methotrexate (MTX) therapy. Individual response to MTX is variable. Results provide insight into the molecular mechanisms underlying response to MTX in JIA.", "type": "Expression profiling by array", "pubmed_id": "20827233", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE23687", "order": "none", "update_date": "Mar 18 2013", "subsets": [ { "dataset_id": "GDS4272", "description": "untreated", "sample_id": [ "GSM580970", "GSM580950", "GSM580952", "GSM580954", "GSM580956", "GSM580958", "GSM580960", "GSM580962", "GSM580964", "GSM580966", "GSM580968" ], "type": "agent", "id": "GDS4272_1" }, { "dataset_id": "GDS4272", "description": "MTX", "sample_id": [ "GSM580971", "GSM580951", "GSM580953", "GSM580955", "GSM580957", "GSM580959", "GSM580961", "GSM580963", "GSM580965", "GSM580967", "GSM580969" ], "type": "agent", "id": "GDS4272_2" }, { "dataset_id": "GDS4272", "description": "JIA (MTX responder)", "sample_id": [ "GSM580950", "GSM580951", "GSM580952", "GSM580953", "GSM580954", "GSM580955", "GSM580956", "GSM580957", "GSM580960", "GSM580961", "GSM580962", "GSM580963", "GSM580968", "GSM580969" ], "type": "disease state", "id": "GDS4272_3" }, { "dataset_id": "GDS4272", "description": "JIA (MTX non-responder)", "sample_id": [ "GSM580958", "GSM580959", "GSM580964", "GSM580965", "GSM580966", "GSM580967", "GSM580970", "GSM580971" ], "type": "disease state", "id": "GDS4272_4" }, { "dataset_id": "GDS4272", "description": "A235_L003", "sample_id": [ "GSM580950", "GSM580951" ], "type": "individual", "id": "GDS4272_5" }, { "dataset_id": "GDS4272", "description": "A235_L009", "sample_id": [ "GSM580952", "GSM580953" ], "type": "individual", "id": "GDS4272_6" }, { "dataset_id": "GDS4272", "description": "A235_L010", "sample_id": [ "GSM580954", "GSM580955" ], "type": "individual", "id": "GDS4272_7" }, { "dataset_id": "GDS4272", "description": "A235_L014", "sample_id": [ "GSM580956", "GSM580957" ], "type": "individual", "id": "GDS4272_8" }, { "dataset_id": "GDS4272", "description": "A235_L015", "sample_id": [ "GSM580958", "GSM580959" ], "type": "individual", "id": "GDS4272_9" }, { "dataset_id": "GDS4272", "description": "A235_L016", "sample_id": [ "GSM580960", "GSM580961" ], "type": "individual", "id": "GDS4272_10" }, { "dataset_id": "GDS4272", "description": "A235_L017", "sample_id": [ "GSM580962", "GSM580963" ], "type": "individual", "id": "GDS4272_11" }, { "dataset_id": "GDS4272", "description": "A235_L027", "sample_id": [ "GSM580964", "GSM580965" ], "type": "individual", "id": "GDS4272_12" }, { "dataset_id": "GDS4272", "description": "A235_L112", "sample_id": [ "GSM580966", "GSM580967" ], "type": "individual", "id": "GDS4272_13" }, { "dataset_id": "GDS4272", "description": "A235_L221", "sample_id": [ "GSM580968", "GSM580969" ], "type": "individual", "id": "GDS4272_14" }, { "dataset_id": "GDS4272", "description": "A235_287", "sample_id": [ "GSM580970", "GSM580971" ], "type": "individual", "id": "GDS4272_15" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4272", "version": 1.0, "instances": "22", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4272.tab", "compression": "gz" } ], [ [ "GDS4273.tab" ], { "title": "Pediatric age-specific host response to septic shock: whole blood", "description": "Analysis of whole blood from children (up to 10 years old) within 24hrs of PICU admission for septic shock. Sepsis therapies useful in adults and older children may have little effect in immunologically immature younger patients. Results provide insight into age-specific host response to sepsis.", "type": "Expression profiling by array", "pubmed_id": "21738952", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "103", "value_type": "transformed count", "reference_series": "GSE26378", "order": "none", "update_date": "Feb 21 2014", "subsets": [ { "dataset_id": "GDS4273", "description": "septic shock", "sample_id": [ "GSM647541", "GSM647629", "GSM647628", "GSM647627", "GSM647540", "GSM647620", "GSM647619", "GSM647618", "GSM647617", "GSM647616", "GSM647615", "GSM647614", "GSM647613", "GSM647612", "GSM647611", "GSM647535", "GSM647610", "GSM647609", "GSM647603", "GSM647602", "GSM647601", "GSM647600", "GSM647599", "GSM647598", "GSM647597", "GSM647596", "GSM647532", "GSM647595", "GSM647594", "GSM647593", "GSM647592", "GSM647591", "GSM647588", "GSM647587", "GSM647586", "GSM647585", "GSM647584", "GSM647531", "GSM647583", "GSM647582", "GSM647581", "GSM647580", "GSM647579", "GSM647578", "GSM647577", "GSM647576", "GSM647574", "GSM647573", "GSM647530", "GSM647572", "GSM647571", "GSM647570", "GSM647569", "GSM647568", "GSM647567", "GSM647565", "GSM647564", "GSM647563", "GSM647562", "GSM647529", "GSM647561", "GSM647560", "GSM647559", "GSM647558", "GSM647557", "GSM647556", "GSM647555", "GSM647554", "GSM647553", "GSM647552", "GSM647528", "GSM647551", "GSM647550", "GSM647549", "GSM647548", "GSM647547", "GSM647546", "GSM647545", "GSM647544", "GSM647543", "GSM647542", "GSM647527" ], "type": "disease state", "id": "GDS4273_1" }, { "dataset_id": "GDS4273", "description": "healthy control", "sample_id": [ "GSM647589", "GSM647575", "GSM647566", "GSM647539", "GSM647538", "GSM647537", "GSM647536", "GSM647626", "GSM647625", "GSM647534", "GSM647624", "GSM647623", "GSM647622", "GSM647621", "GSM647608", "GSM647607", "GSM647606", "GSM647605", "GSM647604", "GSM647590", "GSM647533" ], "type": "disease state", "id": "GDS4273_2" }, { "dataset_id": "GDS4273", "description": "neonate (0.0-0.1 years)", "sample_id": [ "GSM647547", "GSM647552", "GSM647553", "GSM647565", "GSM647569", "GSM647574", "GSM647577" ], "type": "development stage", "id": "GDS4273_3" }, { "dataset_id": "GDS4273", "description": "infant (0.2-1.9 years)", "sample_id": [ "GSM647580", "GSM647560", "GSM647619", "GSM647550", "GSM647528", "GSM647537", "GSM647616", "GSM647626", "GSM647545", "GSM647617", "GSM647541", "GSM647597", "GSM647549", "GSM647561", "GSM647579", "GSM647598", "GSM647613", "GSM647573", "GSM647576", "GSM647593", "GSM647621", "GSM647533", "GSM647540", "GSM647546", "GSM647570", "GSM647595", "GSM647606", "GSM647531", "GSM647536", "GSM647615", "GSM647568", "GSM647583", "GSM647557", "GSM647567", "GSM647529", "GSM647592" ], "type": "development stage", "id": "GDS4273_4" }, { "dataset_id": "GDS4273", "description": "toddler (2.0-5.9 years)", "sample_id": [ "GSM647527", "GSM647530", "GSM647575", "GSM647610", "GSM647624", "GSM647607", "GSM647594", "GSM647600", "GSM647629", "GSM647603", "GSM647608", "GSM647622", "GSM647625", "GSM647614", "GSM647599", "GSM647612", "GSM647532", "GSM647556", "GSM647544", "GSM647581", "GSM647591", "GSM647623", "GSM647572", "GSM647578", "GSM647590", "GSM647605", "GSM647538", "GSM647558", "GSM647582", "GSM647618", "GSM647611", "GSM647601", "GSM647551" ], "type": "development stage", "id": "GDS4273_5" }, { "dataset_id": "GDS4273", "description": "school-age (6.0-9.8 years)", "sample_id": [ "GSM647554", "GSM647627", "GSM647548", "GSM647571", "GSM647589", "GSM647534", "GSM647596", "GSM647555", "GSM647584", "GSM647542", "GSM647559", "GSM647586", "GSM647566", "GSM647628", "GSM647543", "GSM647539", "GSM647588", "GSM647620", "GSM647562", "GSM647585", "GSM647587", "GSM647609", "GSM647563", "GSM647535", "GSM647604", "GSM647564", "GSM647602" ], "type": "development stage", "id": "GDS4273_6" }, { "dataset_id": "GDS4273", "description": "outcome: nonsurvivor", "sample_id": [ "GSM647535", "GSM647545", "GSM647549", "GSM647550", "GSM647560", "GSM647563", "GSM647569", "GSM647574", "GSM647577", "GSM647582", "GSM647591", "GSM647617" ], "type": "other", "id": "GDS4273_7" }, { "dataset_id": "GDS4273", "description": "outcome: survivor", "sample_id": [ "GSM647527", "GSM647528", "GSM647529", "GSM647530", "GSM647531", "GSM647532", "GSM647533", "GSM647534", "GSM647536", "GSM647537", "GSM647538", "GSM647539", "GSM647540", "GSM647541", "GSM647542", "GSM647543", "GSM647544", "GSM647546", "GSM647547", "GSM647548", "GSM647551", "GSM647552", "GSM647553", "GSM647554", "GSM647555", "GSM647556", "GSM647557", "GSM647558", "GSM647559", "GSM647561", "GSM647562", "GSM647564", "GSM647565", "GSM647566", "GSM647567", "GSM647568", "GSM647570", "GSM647571", "GSM647572", "GSM647573", "GSM647575", "GSM647576", "GSM647578", "GSM647579", "GSM647580", "GSM647581", "GSM647583", "GSM647584", "GSM647585", "GSM647586", "GSM647587", "GSM647588", "GSM647589", "GSM647590", "GSM647592", "GSM647593", "GSM647594", "GSM647595", "GSM647596", "GSM647597", "GSM647598", "GSM647599", "GSM647600", "GSM647601", "GSM647602", "GSM647603", "GSM647604", "GSM647605", "GSM647606", "GSM647607", "GSM647608", "GSM647609", "GSM647610", "GSM647611", "GSM647612", "GSM647613", "GSM647614", "GSM647615", "GSM647616", "GSM647618", "GSM647619", "GSM647620", "GSM647621", "GSM647622", "GSM647623", "GSM647624", "GSM647625", "GSM647626", "GSM647627", "GSM647628", "GSM647629" ], "type": "other", "id": "GDS4273_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4273", "version": 1.0, "instances": "103", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4273.tab", "compression": "gz" } ], [ [ "GDS4274.tab" ], { "title": "Stratification of pediatric septic shock patients: whole blood", "description": "Analysis of whole blood from children (up to 10 years old) within 24hrs of PICU admission for septic shock. Heterogeneous clinical phenotypes stratify the septic shock patients. Results provide insight into the molecular mechanisms underlying these septic shock subgroups.", "type": "Expression profiling by array", "pubmed_id": [ "19624809", "21738952" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "130", "value_type": "transformed count", "reference_series": "GSE26440", "order": "none", "update_date": "Feb 21 2014", "subsets": [ { "dataset_id": "GDS4274", "description": "septic shock", "sample_id": [ "GSM648719", "GSM648718", "GSM648717", "GSM648716", "GSM648715", "GSM648714", "GSM648713", "GSM648712", "GSM648711", "GSM648598", "GSM648710", "GSM648709", "GSM648708", "GSM648707", "GSM648706", "GSM648705", "GSM648704", "GSM648702", "GSM648698", "GSM648697", "GSM648597", "GSM648696", "GSM648695", "GSM648685", "GSM648684", "GSM648683", "GSM648682", "GSM648680", "GSM648675", "GSM648670", "GSM648667", "GSM648596", "GSM648666", "GSM648665", "GSM648664", "GSM648663", "GSM648662", "GSM648661", "GSM648660", "GSM648659", "GSM648658", "GSM648657", "GSM648595", "GSM648656", "GSM648655", "GSM648654", "GSM648653", "GSM648652", "GSM648651", "GSM648650", "GSM648649", "GSM648648", "GSM648647", "GSM648594", "GSM648646", "GSM648645", "GSM648644", "GSM648643", "GSM648642", "GSM648636", "GSM648635", "GSM648634", "GSM648633", "GSM648629", "GSM648593", "GSM648628", "GSM648627", "GSM648626", "GSM648625", "GSM648624", "GSM648623", "GSM648622", "GSM648621", "GSM648620", "GSM648619", "GSM648592", "GSM648618", "GSM648617", "GSM648616", "GSM648615", "GSM648614", "GSM648613", "GSM648612", "GSM648611", "GSM648610", "GSM648609", "GSM648591", "GSM648608", "GSM648607", "GSM648606", "GSM648605", "GSM648604", "GSM648603", "GSM648602", "GSM648601", "GSM648600", "GSM648599", "GSM648590" ], "type": "disease state", "id": "GDS4274_1" }, { "dataset_id": "GDS4274", "description": "healthy control", "sample_id": [ "GSM648668", "GSM648641", "GSM648640", "GSM648639", "GSM648638", "GSM648637", "GSM648703", "GSM648701", "GSM648700", "GSM648632", "GSM648699", "GSM648694", "GSM648693", "GSM648692", "GSM648691", "GSM648690", "GSM648689", "GSM648688", "GSM648687", "GSM648686", "GSM648631", "GSM648681", "GSM648679", "GSM648678", "GSM648677", "GSM648676", "GSM648674", "GSM648673", "GSM648672", "GSM648671", "GSM648669", "GSM648630" ], "type": "disease state", "id": "GDS4274_2" }, { "dataset_id": "GDS4274", "description": "neonate (0.0-0.1 years)", "sample_id": [ "GSM648620", "GSM648628", "GSM648637", "GSM648638", "GSM648641", "GSM648646", "GSM648649", "GSM648672", "GSM648674", "GSM648675", "GSM648703", "GSM648708", "GSM648605", "GSM648618", "GSM648682", "GSM648698" ], "type": "development stage", "id": "GDS4274_3" }, { "dataset_id": "GDS4274", "description": "infant (0.2-1.9 years)", "sample_id": [ "GSM648645", "GSM648678", "GSM648686", "GSM648595", "GSM648613", "GSM648647", "GSM648679", "GSM648681", "GSM648704", "GSM648706", "GSM648603", "GSM648597", "GSM648619", "GSM648654", "GSM648669", "GSM648690", "GSM648594", "GSM648606", "GSM648600", "GSM648631", "GSM648635", "GSM648671", "GSM648702", "GSM648622", "GSM648693", "GSM648683", "GSM648661", "GSM648670", "GSM648695", "GSM648664", "GSM648691", "GSM648707", "GSM648621", "GSM648636", "GSM648685", "GSM648667", "GSM648700", "GSM648593", "GSM648623", "GSM648655", "GSM648663", "GSM648689" ], "type": "development stage", "id": "GDS4274_4" }, { "dataset_id": "GDS4274", "description": "toddler (2.0-5.9 years)", "sample_id": [ "GSM648602", "GSM648699", "GSM648711", "GSM648712", "GSM648713", "GSM648714", "GSM648716", "GSM648717", "GSM648592", "GSM648624", "GSM648650", "GSM648626", "GSM648643", "GSM648656", "GSM648604", "GSM648715", "GSM648648", "GSM648598", "GSM648607", "GSM648616", "GSM648617", "GSM648612", "GSM648629", "GSM648639", "GSM648640", "GSM648660", "GSM648591", "GSM648614", "GSM648692", "GSM648630", "GSM648615", "GSM648668", "GSM648701", "GSM648625", "GSM648710", "GSM648611", "GSM648601", "GSM648651", "GSM648694", "GSM648632", "GSM648657", "GSM648634", "GSM648676", "GSM648697" ], "type": "development stage", "id": "GDS4274_5" }, { "dataset_id": "GDS4274", "description": "school-age (6.0-10.9 years)", "sample_id": [ "GSM648653", "GSM648687", "GSM648688", "GSM648665", "GSM648680", "GSM648608", "GSM648673", "GSM648696", "GSM648609", "GSM648627", "GSM648610", "GSM648633", "GSM648642", "GSM648718", "GSM648659", "GSM648662", "GSM648684", "GSM648709", "GSM648599", "GSM648666", "GSM648644", "GSM648596", "GSM648590", "GSM648705", "GSM648677", "GSM648719", "GSM648658", "GSM648652" ], "type": "development stage", "id": "GDS4274_6" }, { "dataset_id": "GDS4274", "description": "group A", "sample_id": [ "GSM648620", "GSM648646", "GSM648649", "GSM648675", "GSM648708", "GSM648605", "GSM648618", "GSM648682", "GSM648698", "GSM648645", "GSM648595", "GSM648647", "GSM648704", "GSM648706", "GSM648635", "GSM648695", "GSM648667", "GSM648650", "GSM648643", "GSM648656", "GSM648715", "GSM648615", "GSM648696", "GSM648642", "GSM648718", "GSM648596", "GSM648590", "GSM648705" ], "type": "other", "id": "GDS4274_7" }, { "dataset_id": "GDS4274", "description": "group B", "sample_id": [ "GSM648594", "GSM648600", "GSM648702", "GSM648622", "GSM648683", "GSM648661", "GSM648664", "GSM648621", "GSM648636", "GSM648685", "GSM648593", "GSM648623", "GSM648655", "GSM648719", "GSM648658", "GSM648652", "GSM648602", "GSM648624", "GSM648604", "GSM648648", "GSM648598", "GSM648629", "GSM648660", "GSM648614", "GSM648625", "GSM648710", "GSM648601", "GSM648651", "GSM648657", "GSM648634", "GSM648697", "GSM648653", "GSM648665", "GSM648680", "GSM648608", "GSM648609", "GSM648610", "GSM648633", "GSM648659", "GSM648662", "GSM648684", "GSM648709", "GSM648599", "GSM648666", "GSM648644" ], "type": "other", "id": "GDS4274_8" }, { "dataset_id": "GDS4274", "description": "group C", "sample_id": [ "GSM648628", "GSM648613", "GSM648603", "GSM648597", "GSM648619", "GSM648654", "GSM648606", "GSM648670", "GSM648707", "GSM648663", "GSM648711", "GSM648712", "GSM648713", "GSM648714", "GSM648716", "GSM648717", "GSM648592", "GSM648626", "GSM648607", "GSM648616", "GSM648617", "GSM648612", "GSM648591", "GSM648611", "GSM648627" ], "type": "other", "id": "GDS4274_9" }, { "dataset_id": "GDS4274", "description": "n/a", "sample_id": [ "GSM648637", "GSM648638", "GSM648641", "GSM648672", "GSM648674", "GSM648703", "GSM648678", "GSM648686", "GSM648679", "GSM648681", "GSM648669", "GSM648690", "GSM648631", "GSM648671", "GSM648693", "GSM648691", "GSM648700", "GSM648689", "GSM648699", "GSM648639", "GSM648640", "GSM648692", "GSM648630", "GSM648668", "GSM648701", "GSM648694", "GSM648632", "GSM648676", "GSM648687", "GSM648688", "GSM648673", "GSM648677" ], "type": "other", "id": "GDS4274_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4274", "version": 1.0, "instances": "130", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4274.tab", "compression": "gz" } ], [ [ "GDS4275.tab" ], { "title": "Pituitary gonadotrope tumors", "description": "Analysis of gonadotrope/null cell tumors and normal pituitaries from autopsy samples. Pituitary gonadotrope tumors cause significant morbidity, hormonal deficits, and are more common in men. Results provide insight into molecular mechanisms involved in pituitary tumorigenesis and progression.", "type": "Expression profiling by array", "pubmed_id": "21810943", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE26966", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4275", "description": "normal pituitary", "sample_id": [ "GSM663736", "GSM663737", "GSM663738", "GSM663739", "GSM663740", "GSM663741", "GSM663742", "GSM663743", "GSM663744" ], "type": "disease state", "id": "GDS4275_1" }, { "dataset_id": "GDS4275", "description": "gonadotrope tumor", "sample_id": [ "GSM663745", "GSM663746", "GSM663747", "GSM663748", "GSM663750", "GSM663751", "GSM663752", "GSM663753", "GSM663755", "GSM663757" ], "type": "disease state", "id": "GDS4275_2" }, { "dataset_id": "GDS4275", "description": "null cell tumor", "sample_id": [ "GSM663749", "GSM663754", "GSM663756", "GSM663758" ], "type": "disease state", "id": "GDS4275_3" }, { "dataset_id": "GDS4275", "description": "male", "sample_id": [ "GSM663736", "GSM663740", "GSM663742", "GSM663743", "GSM663745", "GSM663746", "GSM663747", "GSM663751", "GSM663752", "GSM663754", "GSM663755", "GSM663757" ], "type": "gender", "id": "GDS4275_4" }, { "dataset_id": "GDS4275", "description": "female", "sample_id": [ "GSM663737", "GSM663738", "GSM663739", "GSM663741", "GSM663744", "GSM663748", "GSM663749", "GSM663750", "GSM663753", "GSM663756", "GSM663758" ], "type": "gender", "id": "GDS4275_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4275", "version": 1.0, "instances": "23", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4275.tab", "compression": "gz" } ], [ [ "GDS4276.tab" ], { "title": "Subcutaneous and visceral adipose tissue from lean or obese children", "description": "Analysis of subcutaneous and visceral adipose tissue (VAT) from lean and obese pre-pubertal children. The inflammatory environment of VAT may promote insulin resistance and type 2 diabetes. Results provide insight into molecular mechanisms underlying the inflammatory milieu of VAT in children.", "type": "Expression profiling by array", "pubmed_id": "21609243", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE29718", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4276", "description": "visceral fat", "sample_id": [ "GSM737032", "GSM737022", "GSM737031", "GSM737030", "GSM737021" ], "type": "tissue", "id": "GDS4276_1" }, { "dataset_id": "GDS4276", "description": "subcutaneous fat", "sample_id": [ "GSM737029", "GSM737028", "GSM737027", "GSM737026", "GSM737025", "GSM737020", "GSM737019", "GSM737018", "GSM737017", "GSM737024", "GSM737023", "GSM737016", "GSM737015", "GSM737014", "GSM737013" ], "type": "tissue", "id": "GDS4276_2" }, { "dataset_id": "GDS4276", "description": "female", "sample_id": [ "GSM737021", "GSM737030", "GSM737031", "GSM737013", "GSM737014", "GSM737015", "GSM737016", "GSM737023", "GSM737024" ], "type": "gender", "id": "GDS4276_3" }, { "dataset_id": "GDS4276", "description": "male", "sample_id": [ "GSM737022", "GSM737032", "GSM737017", "GSM737018", "GSM737019", "GSM737020", "GSM737025", "GSM737026", "GSM737027", "GSM737028", "GSM737029" ], "type": "gender", "id": "GDS4276_4" }, { "dataset_id": "GDS4276", "description": "obese", "sample_id": [ "GSM737030", "GSM737031", "GSM737032", "GSM737023", "GSM737024", "GSM737025", "GSM737026", "GSM737027", "GSM737028", "GSM737029" ], "type": "disease state", "id": "GDS4276_5" }, { "dataset_id": "GDS4276", "description": "lean", "sample_id": [ "GSM737021", "GSM737022", "GSM737013", "GSM737014", "GSM737015", "GSM737016", "GSM737017", "GSM737018", "GSM737019", "GSM737020" ], "type": "disease state", "id": "GDS4276_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4276", "version": 1.0, "instances": "20", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4276.tab", "compression": "gz" } ], [ [ "GDS4277.tab" ], { "title": "Mixed lineage leukemia gene rearrangements in acute myeloid leukemia: bone marrow mononuclear cells", "description": "Analysis of bone marrow cells from AML cases representing MLL chromosomal translocation (tMLL) or partial tandem duplication (MLL-PTD). Rearrangements of MLL at chromosome 11q23 are commonly involved in acute leukemia. Results provide insight into molecular heterogeneity between MLL-PTD and tMLL.", "type": "Expression profiling by array", "pubmed_id": "21665178", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE15013", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4277", "description": "MLL translocation", "sample_id": [ "GSM307966", "GSM307961", "GSM307960", "GSM307959", "GSM307958", "GSM307957", "GSM307953", "GSM307952", "GSM307951", "GSM304968" ], "type": "genotype/variation", "id": "GDS4277_1" }, { "dataset_id": "GDS4277", "description": "MLL partial tandem duplication", "sample_id": [ "GSM366174", "GSM366173", "GSM366172", "GSM366171", "GSM366170", "GSM366169", "GSM366168", "GSM366167", "GSM366166", "GSM366165", "GSM366164", "GSM366163", "GSM366162", "GSM366161", "GSM366160" ], "type": "genotype/variation", "id": "GDS4277_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4277", "version": 1.0, "instances": "25", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4277.tab", "compression": "gz" } ], [ [ "GDS4278.tab" ], { "title": "Acute myeloid leukemia with CEBPA mutations [AMLSG cohort]: mononuclear cells", "description": "Analysis of mononuclear cells from bone marrow of untreated AML patients with CCAAT/enhancer binding protein alpha double mutation (CEBPAdm) or single mutation (CEBPAsm). Favorable outcome is observed in AML patients with CEBPAdm. Results provide insight into molecular basis of AML classification.", "type": "Expression profiling by array", "pubmed_id": "21177436", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "154", "value_type": "transformed count", "reference_series": "GSE22845", "order": "none", "update_date": "Mar 18 2013", "subsets": [ { "dataset_id": "GDS4278", "description": "CEBPAdm", "sample_id": [ "GSM564615", "GSM564616", "GSM564617", "GSM564618", "GSM564619", "GSM564620", "GSM564621", "GSM564622", "GSM564623", "GSM564624", "GSM564625", "GSM564626", "GSM564627", "GSM564628", "GSM564629", "GSM564630" ], "type": "genotype/variation", "id": "GDS4278_1" }, { "dataset_id": "GDS4278", "description": "CEBPAsm", "sample_id": [ "GSM564609", "GSM564610", "GSM564611", "GSM564612", "GSM564613", "GSM564614" ], "type": "genotype/variation", "id": "GDS4278_2" }, { "dataset_id": "GDS4278", "description": "CEBPAwt", "sample_id": [ "GSM564631", "GSM564632", "GSM564633", "GSM564634", "GSM564635", "GSM564636", "GSM564637", "GSM564638", "GSM564639", "GSM564640", "GSM564641", "GSM564642", "GSM564643", "GSM564644", "GSM564645", "GSM564646", "GSM564647", "GSM564648", "GSM564649", "GSM564650", "GSM564651", "GSM564652", "GSM564653", "GSM564654", "GSM564655", "GSM564656", "GSM564657", "GSM564658", "GSM564659", "GSM564660", "GSM564661", "GSM564662", "GSM564663", "GSM564664", "GSM564665", "GSM564666", "GSM564667", "GSM564668", "GSM564669", "GSM564670", "GSM564671", "GSM564672", "GSM564673", "GSM564674", "GSM564675", "GSM564676", "GSM564677", "GSM564678", "GSM564679", "GSM564680", "GSM564681", "GSM564682", "GSM564683", "GSM564684", "GSM564685", "GSM564686", "GSM564687", "GSM564688", "GSM564689", "GSM564690", "GSM564691", "GSM564692", "GSM564693", "GSM564694", "GSM564695", "GSM564696", "GSM564697", "GSM564698", "GSM564699", "GSM564700", "GSM564701", "GSM564702", "GSM564703", "GSM564704", "GSM564705", "GSM564706", "GSM564707", "GSM564708", "GSM564709", "GSM564710", "GSM564711", "GSM564712", "GSM564713", "GSM564714", "GSM564715", "GSM564716", "GSM564717", "GSM564718", "GSM564719", "GSM564720", "GSM564721", "GSM564722", "GSM564723", "GSM564724", "GSM564725", "GSM564726", "GSM564727", "GSM564728", "GSM564729", "GSM564730", "GSM564731", "GSM564732", "GSM564733", "GSM564734", "GSM564735", "GSM564736", "GSM564737", "GSM564738", "GSM564739", "GSM564740", "GSM564741", "GSM564742", "GSM564743", "GSM564744", "GSM564745", "GSM564746", "GSM564747", "GSM564748", "GSM564749", "GSM564750", "GSM564751", "GSM564752", "GSM564753", "GSM564754", "GSM564755", "GSM564756", "GSM564757", "GSM564758", "GSM564759", "GSM564760", "GSM564761", "GSM564762" ], "type": "genotype/variation", "id": "GDS4278_3" }, { "dataset_id": "GDS4278", "description": "AML normal karyotype", "sample_id": [ "GSM564609", "GSM564618", "GSM564708", "GSM564709", "GSM564710", "GSM564711", "GSM564712", "GSM564713", "GSM564714", "GSM564715", "GSM564716", "GSM564717", "GSM564619", "GSM564718", "GSM564719", "GSM564720", "GSM564721", "GSM564722", "GSM564723", "GSM564724", "GSM564725", "GSM564726", "GSM564727", "GSM564620", "GSM564728", "GSM564729", "GSM564730", "GSM564731", "GSM564732", "GSM564733", "GSM564734", "GSM564735", "GSM564736", "GSM564737", "GSM564621", "GSM564738", "GSM564739", "GSM564740", "GSM564741", "GSM564742", "GSM564743", "GSM564744", "GSM564745", "GSM564746", "GSM564747", "GSM564622", "GSM564748", "GSM564749", "GSM564750", "GSM564751", "GSM564752", "GSM564753", "GSM564754", "GSM564755", "GSM564756", "GSM564757", "GSM564623", "GSM564758", "GSM564759", "GSM564760", "GSM564761", "GSM564762", "GSM564624", "GSM564625", "GSM564626", "GSM564627", "GSM564610", "GSM564628", "GSM564629", "GSM564630", "GSM564631", "GSM564632", "GSM564633", "GSM564634", "GSM564635", "GSM564636", "GSM564637", "GSM564611", "GSM564638", "GSM564639", "GSM564640", "GSM564641", "GSM564642", "GSM564643", "GSM564644", "GSM564645", "GSM564647", "GSM564612", "GSM564648", "GSM564649", "GSM564650", "GSM564651", "GSM564652", "GSM564653", "GSM564654", "GSM564655", "GSM564656", "GSM564657", "GSM564613", "GSM564658", "GSM564659", "GSM564660", "GSM564661", "GSM564662", "GSM564663", "GSM564664", "GSM564665", "GSM564666", "GSM564667", "GSM564614", "GSM564668", "GSM564669", "GSM564670", "GSM564671", "GSM564672", "GSM564673", "GSM564674", "GSM564675", "GSM564676", "GSM564677", "GSM564615", "GSM564678", "GSM564679", "GSM564680", "GSM564682", "GSM564683", "GSM564684", "GSM564685", "GSM564686", "GSM564687", "GSM564616", "GSM564688", "GSM564689", "GSM564690", "GSM564691", "GSM564692", "GSM564694", "GSM564695", "GSM564696", "GSM564697", "GSM564617", "GSM564698", "GSM564700", "GSM564701", "GSM564702", "GSM564703", "GSM564704", "GSM564705", "GSM564706", "GSM564707" ], "type": "disease state", "id": "GDS4278_4" }, { "dataset_id": "GDS4278", "description": "AML 46,XY,9ph karyotype", "sample_id": [ "GSM564681" ], "type": "disease state", "id": "GDS4278_5" }, { "dataset_id": "GDS4278", "description": "AML 46,XY,inv(10)(p12q21)c karyotype", "sample_id": [ "GSM564693" ], "type": "disease state", "id": "GDS4278_6" }, { "dataset_id": "GDS4278", "description": "AML 46,XY,inv(9)(p13q22)c karyotype", "sample_id": [ "GSM564646" ], "type": "disease state", "id": "GDS4278_7" }, { "dataset_id": "GDS4278", "description": "AML 46,XY,inv(9)(p11q13)c karyotype", "sample_id": [ "GSM564699" ], "type": "disease state", "id": "GDS4278_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4278", "version": 1.0, "instances": "154", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4278.tab", "compression": "gz" } ], [ [ "GDS4279.tab" ], { "title": "Early and advanced idiopathic pulmonary fibrosis: whole lung", "description": "Analysis of whole lung biopsy or explant from early and advanced idiopathic pulmonary fibrosis (IPF) patients. IPF is a fatal subtype of pulmonary fibrosis difficult to diagnose. Results provide insight into developing a diagnostic model for IPF.", "type": "Expression profiling by array", "pubmed_id": "21974901", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE24206", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4279", "description": "lung", "sample_id": [ "GSM595419", "GSM595417", "GSM595416", "GSM595414", "GSM595411", "GSM595407" ], "type": "tissue", "id": "GDS4279_1" }, { "dataset_id": "GDS4279", "description": "lung, upper lobe", "sample_id": [ "GSM595439", "GSM595426", "GSM595424", "GSM595423", "GSM595422", "GSM595421", "GSM595443", "GSM595435", "GSM595432", "GSM595428" ], "type": "tissue", "id": "GDS4279_2" }, { "dataset_id": "GDS4279", "description": "lung, lower lobe", "sample_id": [ "GSM595441", "GSM595427", "GSM595445", "GSM595437", "GSM595434", "GSM595429", "GSM595425" ], "type": "tissue", "id": "GDS4279_3" }, { "dataset_id": "GDS4279", "description": "healthy control", "sample_id": [ "GSM595419", "GSM595417", "GSM595416", "GSM595414", "GSM595411", "GSM595407" ], "type": "disease state", "id": "GDS4279_4" }, { "dataset_id": "GDS4279", "description": "early IPF", "sample_id": [ "GSM595439", "GSM595426", "GSM595424", "GSM595423", "GSM595422", "GSM595421", "GSM595441", "GSM595427" ], "type": "disease state", "id": "GDS4279_5" }, { "dataset_id": "GDS4279", "description": "advanced IPF", "sample_id": [ "GSM595443", "GSM595435", "GSM595432", "GSM595428", "GSM595445", "GSM595437", "GSM595434", "GSM595429", "GSM595425" ], "type": "disease state", "id": "GDS4279_6" }, { "dataset_id": "GDS4279", "description": "transplant", "sample_id": [ "GSM595419", "GSM595417", "GSM595416", "GSM595414", "GSM595411", "GSM595407" ], "type": "specimen", "id": "GDS4279_7" }, { "dataset_id": "GDS4279", "description": "biopsy", "sample_id": [ "GSM595439", "GSM595426", "GSM595424", "GSM595423", "GSM595422", "GSM595421", "GSM595441", "GSM595427" ], "type": "specimen", "id": "GDS4279_8" }, { "dataset_id": "GDS4279", "description": "explant", "sample_id": [ "GSM595443", "GSM595435", "GSM595432", "GSM595428", "GSM595445", "GSM595437", "GSM595434", "GSM595429", "GSM595425" ], "type": "specimen", "id": "GDS4279_9" }, { "dataset_id": "GDS4279", "description": "unknown", "sample_id": [ "GSM595419", "GSM595417", "GSM595416", "GSM595414", "GSM595411", "GSM595407" ], "type": "gender", "id": "GDS4279_10" }, { "dataset_id": "GDS4279", "description": "male", "sample_id": [ "GSM595421", "GSM595423", "GSM595424", "GSM595425", "GSM595426", "GSM595427", "GSM595428", "GSM595429", "GSM595432", "GSM595434", "GSM595439", "GSM595441" ], "type": "gender", "id": "GDS4279_11" }, { "dataset_id": "GDS4279", "description": "female", "sample_id": [ "GSM595422", "GSM595435", "GSM595437", "GSM595443", "GSM595445" ], "type": "gender", "id": "GDS4279_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4279", "version": 1.0, "instances": "23", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4279.tab", "compression": "gz" } ], [ [ "GDS428.tab" ], { "title": "Stem cell self renewal and Bmi-1 (MG-U74A)", "description": "Molecular basis of renewal properties in Bmi-1-deficient central and peripheral nervous system stem cells. Bmi-1 is a polycomb transcriptional repressor. Forebrain and gut neurospheres cultured from postnatal day 0 Bmi-1 -/- and wild type mice compared.", "type": "Expression profiling by array", "pubmed_id": "14574365", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE611", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS428", "description": "Bmi-1 -/-", "sample_id": [ "GSM9238", "GSM9240" ], "type": "strain", "id": "GDS428_1" }, { "dataset_id": "GDS428", "description": "wild type", "sample_id": [ "GSM9239", "GSM9241" ], "type": "strain", "id": "GDS428_2" }, { "dataset_id": "GDS428", "description": "brain neurosphere", "sample_id": [ "GSM9238", "GSM9239" ], "type": "cell type", "id": "GDS428_3" }, { "dataset_id": "GDS428", "description": "gut neurosphere", "sample_id": [ "GSM9240", "GSM9241" ], "type": "cell type", "id": "GDS428_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS428", "version": 1.0, "instances": "4", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS428.tab", "compression": "gz" } ], [ [ "GDS4280.tab" ], { "title": "BCL6 corepressor somatic mutation in acute myeloid leukemia with normal karyotype: Ficoll-enriched mononuclear cells", "description": "Analysis of mononuclear cells from normal karyotype, acute myeloid leukemia (CN-AML) patients with BCL6 corepressor (BCOR) mutation. CN-AML BCOR mutations are associated with oculo-facio-cardiodental genetic syndrome and poor outcome. Results provide insight into role of BCOR in CN-AML pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22012066", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE30442", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4280", "description": "wild type", "sample_id": [ "GSM755001", "GSM755002", "GSM755003", "GSM755004", "GSM755005", "GSM755006", "GSM755007", "GSM755008", "GSM755009", "GSM755010", "GSM755011", "GSM755024" ], "type": "genotype/variation", "id": "GDS4280_1" }, { "dataset_id": "GDS4280", "description": "BCOR mutation", "sample_id": [ "GSM755012", "GSM755013", "GSM755014", "GSM755015", "GSM755016", "GSM755017", "GSM755018", "GSM755019", "GSM755020", "GSM755021", "GSM755022", "GSM755023" ], "type": "genotype/variation", "id": "GDS4280_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4280", "version": 1.0, "instances": "24", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4280.tab", "compression": "gz" } ], [ [ "GDS4281.tab" ], { "title": "Uveal melanoma", "description": "Analysis of 29 uveal melanomas isolated from male and female patients. Uveal melanoma is an aggressive intraocular tumor cancer that metastasizes to the liver in ~50% of patients, with high lethality. Results provide insight into molecular pathways involved in uveal melanoma metastatic progression.", "type": "Expression profiling by array", "pubmed_id": "22267972", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE27831", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4281", "description": "male", "sample_id": [ "GSM685471", "GSM685472", "GSM685473", "GSM685522", "GSM685523", "GSM685601", "GSM685603", "GSM685650", "GSM685651", "GSM686961", "GSM686962", "GSM686963", "GSM686986", "GSM686988", "GSM686989", "GSM686990", "GSM686991" ], "type": "gender", "id": "GDS4281_1" }, { "dataset_id": "GDS4281", "description": "female", "sample_id": [ "GSM685470", "GSM685474", "GSM685475", "GSM685602", "GSM685652", "GSM686984", "GSM686985", "GSM686987", "GSM687001", "GSM687002", "GSM687003", "GSM687004" ], "type": "gender", "id": "GDS4281_2" }, { "dataset_id": "GDS4281", "description": "right eye", "sample_id": [ "GSM685471", "GSM685472", "GSM685473", "GSM685474", "GSM685601", "GSM685602", "GSM685650", "GSM685651", "GSM686961", "GSM686962", "GSM686984", "GSM686985", "GSM686987", "GSM686988", "GSM686990", "GSM687004" ], "type": "tissue", "id": "GDS4281_3" }, { "dataset_id": "GDS4281", "description": "left eye", "sample_id": [ "GSM685470", "GSM685475", "GSM685522", "GSM685523", "GSM685603", "GSM685652", "GSM686963", "GSM686986", "GSM686989", "GSM686991", "GSM687001", "GSM687002", "GSM687003" ], "type": "tissue", "id": "GDS4281_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4281", "version": 1.0, "instances": "29", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4281.tab", "compression": "gz" } ], [ [ "GDS4282.tab" ], { "title": "Clear-cell renal cell carcinoma tumors and tumorgrafts deficient for tumor suppressor BAP1 or PBRM1", "description": "Analysis of BAP1- and PBRM1-deficient ccRCC primary tumors, tumors growing in immunodeficient mice (tumorgrafts), and matched normal kidney cortices. BAP1 loss, but not PBRM1 loss, is associated with high-grade tumors. Results provide insight into molecular classification of RCC subtypes.", "type": "Expression profiling by array", "pubmed_id": "22683710", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "76", "value_type": "transformed count", "reference_series": "GSE36895", "order": "none", "update_date": "Mar 16 2013", "subsets": [ { "dataset_id": "GDS4282", "description": "ccRCC tumor", "sample_id": [ "GSM905027", "GSM905026", "GSM905024", "GSM905023", "GSM905044", "GSM905043", "GSM905041", "GSM905040", "GSM905038", "GSM905036", "GSM905034", "GSM905032", "GSM905031", "GSM905029", "GSM904996", "GSM904994", "GSM904991", "GSM905017", "GSM905014", "GSM905012", "GSM905009", "GSM904989", "GSM905007", "GSM905004", "GSM905022", "GSM904986", "GSM905020", "GSM905002", "GSM904999" ], "type": "tissue", "id": "GDS4282_1" }, { "dataset_id": "GDS4282", "description": "normal cortex", "sample_id": [ "GSM905025", "GSM905042", "GSM905039", "GSM905037", "GSM905035", "GSM905033", "GSM905030", "GSM905028", "GSM904995", "GSM904992", "GSM904990", "GSM905016", "GSM905013", "GSM905011", "GSM905008", "GSM904988", "GSM905006", "GSM905003", "GSM905021", "GSM904985", "GSM905018", "GSM905000", "GSM904998" ], "type": "tissue", "id": "GDS4282_2" }, { "dataset_id": "GDS4282", "description": "tumorgraft _p0", "sample_id": [ "GSM905050", "GSM905049", "GSM905046", "GSM905045", "GSM905065", "GSM905064", "GSM905058", "GSM905055", "GSM905051" ], "type": "tissue", "id": "GDS4282_3" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p1", "sample_id": [ "GSM905063", "GSM905061", "GSM905053" ], "type": "tissue", "id": "GDS4282_4" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p2", "sample_id": [ "GSM905062", "GSM905054", "GSM905052" ], "type": "tissue", "id": "GDS4282_5" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p3", "sample_id": [ "GSM905059" ], "type": "tissue", "id": "GDS4282_6" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p4", "sample_id": [ "GSM905047", "GSM905066", "GSM905056" ], "type": "tissue", "id": "GDS4282_7" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p7", "sample_id": [ "GSM905060" ], "type": "tissue", "id": "GDS4282_8" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p8", "sample_id": [ "GSM905048", "GSM905067" ], "type": "tissue", "id": "GDS4282_9" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p9", "sample_id": [ "GSM905057" ], "type": "tissue", "id": "GDS4282_10" }, { "dataset_id": "GDS4282", "description": "tumorgraft_p1_from metastasis", "sample_id": [ "GSM905068" ], "type": "tissue", "id": "GDS4282_11" }, { "dataset_id": "GDS4282", "description": "BAP1 loss/PBRM1 wild type", "sample_id": [ "GSM905048", "GSM905065", "GSM905046", "GSM905066", "GSM905047", "GSM905067", "GSM905004", "GSM905038", "GSM905043", "GSM905024" ], "type": "genotype/variation", "id": "GDS4282_12" }, { "dataset_id": "GDS4282", "description": "BAP1 wild type/PBRM1 loss", "sample_id": [ "GSM904986", "GSM904991", "GSM904994", "GSM904996", "GSM905007", "GSM905012", "GSM905022", "GSM905026", "GSM905027", "GSM905031", "GSM905036", "GSM905041", "GSM905044", "GSM905049", "GSM905050", "GSM905053", "GSM905054", "GSM905061", "GSM905062", "GSM905064", "GSM905068" ], "type": "genotype/variation", "id": "GDS4282_13" }, { "dataset_id": "GDS4282", "description": "BAP1 wild type/PBRM1 wild type", "sample_id": [ "GSM904985", "GSM904988", "GSM904989", "GSM904990", "GSM904992", "GSM904995", "GSM904998", "GSM904999", "GSM905000", "GSM905002", "GSM905003", "GSM905006", "GSM905008", "GSM905009", "GSM905011", "GSM905013", "GSM905014", "GSM905016", "GSM905017", "GSM905018", "GSM905020", "GSM905021", "GSM905023", "GSM905025", "GSM905028", "GSM905029", "GSM905030", "GSM905032", "GSM905033", "GSM905034", "GSM905035", "GSM905037", "GSM905039", "GSM905040", "GSM905042", "GSM905045", "GSM905051", "GSM905052", "GSM905055", "GSM905056", "GSM905057", "GSM905058", "GSM905059", "GSM905060", "GSM905063" ], "type": "genotype/variation", "id": "GDS4282_14" }, { "dataset_id": "GDS4282", "description": "14", "sample_id": [ "GSM904985", "GSM904986" ], "type": "individual", "id": "GDS4282_15" }, { "dataset_id": "GDS4282", "description": "26", "sample_id": [ "GSM904988", "GSM904989" ], "type": "individual", "id": "GDS4282_16" }, { "dataset_id": "GDS4282", "description": "42", "sample_id": [ "GSM904990", "GSM904991" ], "type": "individual", "id": "GDS4282_17" }, { "dataset_id": "GDS4282", "description": "75", "sample_id": [ "GSM904992", "GSM904994" ], "type": "individual", "id": "GDS4282_18" }, { "dataset_id": "GDS4282", "description": "83", "sample_id": [ "GSM904995", "GSM904996" ], "type": "individual", "id": "GDS4282_19" }, { "dataset_id": "GDS4282", "description": "111", "sample_id": [ "GSM904998", "GSM904999" ], "type": "individual", "id": "GDS4282_20" }, { "dataset_id": "GDS4282", "description": "131", "sample_id": [ "GSM905000", "GSM905002" ], "type": "individual", "id": "GDS4282_21" }, { "dataset_id": "GDS4282", "description": "209", "sample_id": [ "GSM905003", "GSM905004" ], "type": "individual", "id": "GDS4282_22" }, { "dataset_id": "GDS4282", "description": "233", "sample_id": [ "GSM905006", "GSM905007" ], "type": "individual", "id": "GDS4282_23" }, { "dataset_id": "GDS4282", "description": "260", "sample_id": [ "GSM905008", "GSM905009" ], "type": "individual", "id": "GDS4282_24" }, { "dataset_id": "GDS4282", "description": "265", "sample_id": [ "GSM905011", "GSM905012" ], "type": "individual", "id": "GDS4282_25" }, { "dataset_id": "GDS4282", "description": "324", "sample_id": [ "GSM905013", "GSM905014" ], "type": "individual", "id": "GDS4282_26" }, { "dataset_id": "GDS4282", "description": "325", "sample_id": [ "GSM905016", "GSM905017" ], "type": "individual", "id": "GDS4282_27" }, { "dataset_id": "GDS4282", "description": "1393", "sample_id": [ "GSM905018", "GSM905020" ], "type": "individual", "id": "GDS4282_28" }, { "dataset_id": "GDS4282", "description": "1524", "sample_id": [ "GSM905021", "GSM905022" ], "type": "individual", "id": "GDS4282_29" }, { "dataset_id": "GDS4282", "description": "T22", "sample_id": [ "GSM905023", "GSM905045" ], "type": "individual", "id": "GDS4282_30" }, { "dataset_id": "GDS4282", "description": "T26", "sample_id": [ "GSM905024", "GSM905046", "GSM905047", "GSM905048" ], "type": "individual", "id": "GDS4282_31" }, { "dataset_id": "GDS4282", "description": "T79", "sample_id": [ "GSM905025", "GSM905026", "GSM905049" ], "type": "individual", "id": "GDS4282_32" }, { "dataset_id": "GDS4282", "description": "T84", "sample_id": [ "GSM905027", "GSM905050" ], "type": "individual", "id": "GDS4282_33" }, { "dataset_id": "GDS4282", "description": "T127", "sample_id": [ "GSM905028", "GSM905029", "GSM905051", "GSM905052" ], "type": "individual", "id": "GDS4282_34" }, { "dataset_id": "GDS4282", "description": "T142", "sample_id": [ "GSM905030", "GSM905031", "GSM905053", "GSM905054" ], "type": "individual", "id": "GDS4282_35" }, { "dataset_id": "GDS4282", "description": "T143", "sample_id": [ "GSM905032", "GSM905055", "GSM905056", "GSM905057" ], "type": "individual", "id": "GDS4282_36" }, { "dataset_id": "GDS4282", "description": "T144", "sample_id": [ "GSM905033", "GSM905034", "GSM905058", "GSM905059", "GSM905060" ], "type": "individual", "id": "GDS4282_37" }, { "dataset_id": "GDS4282", "description": "T158", "sample_id": [ "GSM905035", "GSM905036", "GSM905061", "GSM905062" ], "type": "individual", "id": "GDS4282_38" }, { "dataset_id": "GDS4282", "description": "T163", "sample_id": [ "GSM905037", "GSM905038" ], "type": "individual", "id": "GDS4282_39" }, { "dataset_id": "GDS4282", "description": "T164", "sample_id": [ "GSM905039", "GSM905040", "GSM905063" ], "type": "individual", "id": "GDS4282_40" }, { "dataset_id": "GDS4282", "description": "T165", "sample_id": [ "GSM905041", "GSM905064" ], "type": "individual", "id": "GDS4282_41" }, { "dataset_id": "GDS4282", "description": "T166", "sample_id": [ "GSM905042", "GSM905043", "GSM905065", "GSM905066", "GSM905067" ], "type": "individual", "id": "GDS4282_42" }, { "dataset_id": "GDS4282", "description": "T183", "sample_id": [ "GSM905044", "GSM905068" ], "type": "individual", "id": "GDS4282_43" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4282", "version": 1.0, "instances": "76", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4282.tab", "compression": "gz" } ], [ [ "GDS4283.tab" ], { "title": "Effect of lifestyle on Moroccan Amazighs: peripheral blood leukocytes", "description": "Analysis of leukocytes from regionally distinct groups of Moroccan Amazighs leading diverse lifestyles: nomadic, rural, and urban. The Amazighs represent a genetically relatively homogeneous population. Results provide insight into effect of environment on immune function and disease susceptibility.", "type": "Expression profiling by array", "pubmed_id": "18404217", "platform": "GPL5764", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "10173", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "transformed count", "reference_series": "GSE8847", "order": "none", "update_date": "Nov 14 2012", "subsets": [ { "dataset_id": "GDS4283", "description": "female", "sample_id": [ "GSM219989", "GSM219990", "GSM219993", "GSM219996", "GSM219998", "GSM220001", "GSM220002", "GSM220007", "GSM220008", "GSM220009", "GSM220010", "GSM220011", "GSM220012", "GSM220016", "GSM220020", "GSM220021", "GSM220024", "GSM220025", "GSM220027", "GSM220029", "GSM220031" ], "type": "gender", "id": "GDS4283_1" }, { "dataset_id": "GDS4283", "description": "male", "sample_id": [ "GSM219988", "GSM219991", "GSM219992", "GSM219994", "GSM219995", "GSM219997", "GSM219999", "GSM220000", "GSM220003", "GSM220004", "GSM220005", "GSM220006", "GSM220013", "GSM220014", "GSM220015", "GSM220017", "GSM220018", "GSM220019", "GSM220022", "GSM220023", "GSM220026", "GSM220028", "GSM220030", "GSM220032", "GSM220033" ], "type": "gender", "id": "GDS4283_2" }, { "dataset_id": "GDS4283", "description": "urban", "sample_id": [ "GSM219995", "GSM219991", "GSM220032", "GSM220028", "GSM220004", "GSM220003", "GSM220000", "GSM220023", "GSM220022", "GSM220019", "GSM220017", "GSM219998", "GSM219989", "GSM220011", "GSM220010", "GSM220027", "GSM220002", "GSM220024" ], "type": "individual", "id": "GDS4283_3" }, { "dataset_id": "GDS4283", "description": "rural", "sample_id": [ "GSM219994", "GSM220030", "GSM220006", "GSM220005", "GSM220015", "GSM219996", "GSM219993", "GSM219990", "GSM220031", "GSM220009", "GSM220008", "GSM220025" ], "type": "individual", "id": "GDS4283_4" }, { "dataset_id": "GDS4283", "description": "nomadic", "sample_id": [ "GSM219999", "GSM219997", "GSM219992", "GSM219988", "GSM220033", "GSM220013", "GSM220026", "GSM220018", "GSM220014", "GSM220012", "GSM220029", "GSM220007", "GSM220001", "GSM220021", "GSM220020", "GSM220016" ], "type": "individual", "id": "GDS4283_5" } ], "taxid": "9606", "genes": 9432, "aggregation_function": "mean", "name": "GDS4283", "version": 1.0, "instances": "46", "variables": 9435, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4283.tab", "compression": "gz" } ], [ [ "GDS4284.tab" ], { "title": "Chronic lymphocytic leukemia response to antisense Bcl-2 inhibitor SPC2996: peripheral blood", "description": "Temporal analysis of peripheral blood from 18 relapsed CLL patients treated with a maximum of 6 doses (0.2-6mg/kg) of SPC2996, an antisense molecule targeting the mRNA of Bcl-2 oncoprotein. Results provide insight into the molecular basis of the immunostimulatory effects of SPC2996 in CLL.", "type": "Expression profiling by array", "pubmed_id": "21358717", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "count", "reference_series": "GSE27858", "order": "none", "update_date": "Mar 16 2013", "subsets": [ { "dataset_id": "GDS4284", "description": "control", "sample_id": [ "GSM687644", "GSM687648", "GSM687663", "GSM687668", "GSM687653", "GSM687673", "GSM687683", "GSM687678", "GSM687688", "GSM687699", "GSM687704", "GSM687712", "GSM687719", "GSM687658", "GSM687695", "GSM687707", "GSM687724", "GSM687728" ], "type": "dose", "id": "GDS4284_1" }, { "dataset_id": "GDS4284", "description": "0.2 mg/kg", "sample_id": [ "GSM687646", "GSM687649", "GSM687665", "GSM687651", "GSM687667" ], "type": "dose", "id": "GDS4284_2" }, { "dataset_id": "GDS4284", "description": "1 mg/kg", "sample_id": [ "GSM687670", "GSM687671" ], "type": "dose", "id": "GDS4284_3" }, { "dataset_id": "GDS4284", "description": "2 mg/kg", "sample_id": [ "GSM687654", "GSM687675", "GSM687685", "GSM687656", "GSM687677", "GSM687687" ], "type": "dose", "id": "GDS4284_4" }, { "dataset_id": "GDS4284", "description": "4 mg/kg", "sample_id": [ "GSM687680", "GSM687690", "GSM687700", "GSM687705", "GSM687714", "GSM687721", "GSM687692", "GSM687716", "GSM687722", "GSM687682", "GSM687694", "GSM687702", "GSM687718", "GSM687723" ], "type": "dose", "id": "GDS4284_5" }, { "dataset_id": "GDS4284", "description": "6 mg/kg", "sample_id": [ "GSM687660", "GSM687697", "GSM687709", "GSM687725", "GSM687729", "GSM687661", "GSM687710", "GSM687726", "GSM687730", "GSM687727", "GSM687731" ], "type": "dose", "id": "GDS4284_6" }, { "dataset_id": "GDS4284", "description": "pre-treatment", "sample_id": [ "GSM687644", "GSM687648", "GSM687663", "GSM687668", "GSM687653", "GSM687673", "GSM687683", "GSM687678", "GSM687688", "GSM687699", "GSM687704", "GSM687712", "GSM687719", "GSM687658", "GSM687695", "GSM687707", "GSM687724", "GSM687728" ], "type": "time", "id": "GDS4284_7" }, { "dataset_id": "GDS4284", "description": "4 hrs", "sample_id": [ "GSM687692", "GSM687716", "GSM687722", "GSM687661", "GSM687710", "GSM687726", "GSM687730" ], "type": "time", "id": "GDS4284_8" }, { "dataset_id": "GDS4284", "description": "24 hrs", "sample_id": [ "GSM687646", "GSM687649", "GSM687665", "GSM687670", "GSM687654", "GSM687675", "GSM687685", "GSM687680", "GSM687690", "GSM687700", "GSM687705", "GSM687714", "GSM687721", "GSM687660", "GSM687697", "GSM687709", "GSM687725", "GSM687729" ], "type": "time", "id": "GDS4284_9" }, { "dataset_id": "GDS4284", "description": "4 wks", "sample_id": [ "GSM687651", "GSM687667", "GSM687671", "GSM687656", "GSM687677", "GSM687687", "GSM687682", "GSM687694", "GSM687702", "GSM687718", "GSM687723", "GSM687727", "GSM687731" ], "type": "time", "id": "GDS4284_10" }, { "dataset_id": "GDS4284", "description": "401", "sample_id": [ "GSM687644", "GSM687646" ], "type": "individual", "id": "GDS4284_11" }, { "dataset_id": "GDS4284", "description": "402", "sample_id": [ "GSM687648", "GSM687649", "GSM687651" ], "type": "individual", "id": "GDS4284_12" }, { "dataset_id": "GDS4284", "description": "403", "sample_id": [ "GSM687653", "GSM687654", "GSM687656" ], "type": "individual", "id": "GDS4284_13" }, { "dataset_id": "GDS4284", "description": "404", "sample_id": [ "GSM687658", "GSM687660", "GSM687661" ], "type": "individual", "id": "GDS4284_14" }, { "dataset_id": "GDS4284", "description": "411", "sample_id": [ "GSM687663", "GSM687665", "GSM687667" ], "type": "individual", "id": "GDS4284_15" }, { "dataset_id": "GDS4284", "description": "422", "sample_id": [ "GSM687668", "GSM687670", "GSM687671" ], "type": "individual", "id": "GDS4284_16" }, { "dataset_id": "GDS4284", "description": "424", "sample_id": [ "GSM687673", "GSM687675", "GSM687677" ], "type": "individual", "id": "GDS4284_17" }, { "dataset_id": "GDS4284", "description": "425", "sample_id": [ "GSM687678", "GSM687680", "GSM687682" ], "type": "individual", "id": "GDS4284_18" }, { "dataset_id": "GDS4284", "description": "427", "sample_id": [ "GSM687683", "GSM687685", "GSM687687" ], "type": "individual", "id": "GDS4284_19" }, { "dataset_id": "GDS4284", "description": "428", "sample_id": [ "GSM687688", "GSM687690", "GSM687692", "GSM687694" ], "type": "individual", "id": "GDS4284_20" }, { "dataset_id": "GDS4284", "description": "441", "sample_id": [ "GSM687695", "GSM687697" ], "type": "individual", "id": "GDS4284_21" }, { "dataset_id": "GDS4284", "description": "443", "sample_id": [ "GSM687699", "GSM687700", "GSM687702" ], "type": "individual", "id": "GDS4284_22" }, { "dataset_id": "GDS4284", "description": "444", "sample_id": [ "GSM687704", "GSM687705" ], "type": "individual", "id": "GDS4284_23" }, { "dataset_id": "GDS4284", "description": "448", "sample_id": [ "GSM687707", "GSM687709", "GSM687710" ], "type": "individual", "id": "GDS4284_24" }, { "dataset_id": "GDS4284", "description": "449", "sample_id": [ "GSM687712", "GSM687714", "GSM687716", "GSM687718" ], "type": "individual", "id": "GDS4284_25" }, { "dataset_id": "GDS4284", "description": "450", "sample_id": [ "GSM687719", "GSM687721", "GSM687722", "GSM687723" ], "type": "individual", "id": "GDS4284_26" }, { "dataset_id": "GDS4284", "description": "451", "sample_id": [ "GSM687724", "GSM687725", "GSM687726", "GSM687727" ], "type": "individual", "id": "GDS4284_27" }, { "dataset_id": "GDS4284", "description": "452", "sample_id": [ "GSM687728", "GSM687729", "GSM687730", "GSM687731" ], "type": "individual", "id": "GDS4284_28" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4284", "version": 1.0, "instances": "56", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4284.tab", "compression": "gz" } ], [ [ "GDS4285.tab" ], { "title": "Core binding factor-acute myeloid leukemia patients: mononuclear cells", "description": "Analysis of mononuclear cells isolated from untreated, CBF-AML patients representing t(8;21) and inv(16)/t(16;16) karyotypes. The CBF-AML samples exhibited differential sensitivity to treatment with ABT-737 and BV6. Results provide insight into molecular basis of sensitivity to inhibitor treatment.", "type": "Expression profiling by array", "pubmed_id": "21701487", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE29883", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4285", "description": "CBF# 4", "sample_id": [ "GSM740080" ], "type": "individual", "id": "GDS4285_1" }, { "dataset_id": "GDS4285", "description": "CBF# 6", "sample_id": [ "GSM740081" ], "type": "individual", "id": "GDS4285_2" }, { "dataset_id": "GDS4285", "description": "CBF# 10", "sample_id": [ "GSM740082" ], "type": "individual", "id": "GDS4285_3" }, { "dataset_id": "GDS4285", "description": "CBF# 11", "sample_id": [ "GSM740083" ], "type": "individual", "id": "GDS4285_4" }, { "dataset_id": "GDS4285", "description": "CBF# 12", "sample_id": [ "GSM740084" ], "type": "individual", "id": "GDS4285_5" }, { "dataset_id": "GDS4285", "description": "CBF# 13", "sample_id": [ "GSM740085" ], "type": "individual", "id": "GDS4285_6" }, { "dataset_id": "GDS4285", "description": "CBF# 14", "sample_id": [ "GSM740086" ], "type": "individual", "id": "GDS4285_7" }, { "dataset_id": "GDS4285", "description": "CBF# 15", "sample_id": [ "GSM740087" ], "type": "individual", "id": "GDS4285_8" }, { "dataset_id": "GDS4285", "description": "CBF# 16", "sample_id": [ "GSM740088" ], "type": "individual", "id": "GDS4285_9" }, { "dataset_id": "GDS4285", "description": "CBF# 17", "sample_id": [ "GSM740089" ], "type": "individual", "id": "GDS4285_10" }, { "dataset_id": "GDS4285", "description": "CBF# 18", "sample_id": [ "GSM740090" ], "type": "individual", "id": "GDS4285_11" }, { "dataset_id": "GDS4285", "description": "CBF# 19", "sample_id": [ "GSM740091" ], "type": "individual", "id": "GDS4285_12" }, { "dataset_id": "GDS4285", "description": "peripheral blood", "sample_id": [ "GSM740082", "GSM740080" ], "type": "tissue", "id": "GDS4285_13" }, { "dataset_id": "GDS4285", "description": "bone marrow", "sample_id": [ "GSM740084", "GSM740085", "GSM740086", "GSM740089", "GSM740090", "GSM740091", "GSM740081", "GSM740083", "GSM740087", "GSM740088" ], "type": "tissue", "id": "GDS4285_14" }, { "dataset_id": "GDS4285", "description": "CBF-AML_ t(8;21)", "sample_id": [ "GSM740088", "GSM740087", "GSM740083" ], "type": "disease state", "id": "GDS4285_15" }, { "dataset_id": "GDS4285", "description": "CBF-AML_inv(16)", "sample_id": [ "GSM740081", "GSM740080", "GSM740091", "GSM740090", "GSM740089", "GSM740086", "GSM740085", "GSM740084", "GSM740082" ], "type": "disease state", "id": "GDS4285_16" }, { "dataset_id": "GDS4285", "description": "31 years", "sample_id": [ "GSM740089" ], "type": "age", "id": "GDS4285_17" }, { "dataset_id": "GDS4285", "description": "35 years", "sample_id": [ "GSM740088" ], "type": "age", "id": "GDS4285_18" }, { "dataset_id": "GDS4285", "description": "36 years", "sample_id": [ "GSM740082", "GSM740087" ], "type": "age", "id": "GDS4285_19" }, { "dataset_id": "GDS4285", "description": "37 years", "sample_id": [ "GSM740083" ], "type": "age", "id": "GDS4285_20" }, { "dataset_id": "GDS4285", "description": "47 years", "sample_id": [ "GSM740081" ], "type": "age", "id": "GDS4285_21" }, { "dataset_id": "GDS4285", "description": "48 years", "sample_id": [ "GSM740084" ], "type": "age", "id": "GDS4285_22" }, { "dataset_id": "GDS4285", "description": "50 years", "sample_id": [ "GSM740090" ], "type": "age", "id": "GDS4285_23" }, { "dataset_id": "GDS4285", "description": "54 years", "sample_id": [ "GSM740091" ], "type": "age", "id": "GDS4285_24" }, { "dataset_id": "GDS4285", "description": "56 years", "sample_id": [ "GSM740085" ], "type": "age", "id": "GDS4285_25" }, { "dataset_id": "GDS4285", "description": "57 years", "sample_id": [ "GSM740080" ], "type": "age", "id": "GDS4285_26" }, { "dataset_id": "GDS4285", "description": "60 years", "sample_id": [ "GSM740086" ], "type": "age", "id": "GDS4285_27" }, { "dataset_id": "GDS4285", "description": "female", "sample_id": [ "GSM740080", "GSM740081", "GSM740082", "GSM740086", "GSM740089", "GSM740091" ], "type": "gender", "id": "GDS4285_28" }, { "dataset_id": "GDS4285", "description": "male", "sample_id": [ "GSM740083", "GSM740084", "GSM740085", "GSM740087", "GSM740088", "GSM740090" ], "type": "gender", "id": "GDS4285_29" }, { "dataset_id": "GDS4285", "description": "BV6-resistant/ABT-737-resistant", "sample_id": [ "GSM740080", "GSM740088" ], "type": "other", "id": "GDS4285_30" }, { "dataset_id": "GDS4285", "description": "BV6-resistant/ABT-737-sensitive", "sample_id": [ "GSM740083", "GSM740087", "GSM740089" ], "type": "other", "id": "GDS4285_31" }, { "dataset_id": "GDS4285", "description": "BV6-sensitive/ABT-737-resistant", "sample_id": [ "GSM740081", "GSM740090" ], "type": "other", "id": "GDS4285_32" }, { "dataset_id": "GDS4285", "description": "BV6-sensitive/ABT-737-sensitive", "sample_id": [ "GSM740082", "GSM740085", "GSM740086", "GSM740091" ], "type": "other", "id": "GDS4285_33" }, { "dataset_id": "GDS4285", "description": "BV6-sensitive/ABT-737 response unavailable", "sample_id": [ "GSM740084" ], "type": "other", "id": "GDS4285_34" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4285", "version": 1.0, "instances": "12", "variables": 30813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4285.tab", "compression": "gz" } ], [ [ "GDS4286.tab" ], { "title": "Acute myeloid leukemia fusion oncogene-transduced granulocyte monocyte precursors", "description": "Analysis of granulocyte monocyte precursors (GMPs) transduced with GFP alone or with AML-fusion oncogenes MOZ-TIF2 or NUP98-HOXA9 or AML1-ETO. Results provide insight into the molecular mechanisms underlying transformation and self-renewal downstream of multiple AML-associated oncogenes.", "type": "Expression profiling by array", "pubmed_id": "21505102", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE24797", "order": "none", "update_date": "Jan 06 2014", "subsets": [ { "dataset_id": "GDS4286", "description": "GMP", "sample_id": [ "GSM610622", "GSM610623", "GSM610624", "GSM610625", "GSM610626", "GSM610627", "GSM610628", "GSM610629", "GSM610630", "GSM610631", "GSM610632", "GSM610633", "GSM610634", "GSM610635" ], "type": "cell type", "id": "GDS4286_1" }, { "dataset_id": "GDS4286", "description": "HSC", "sample_id": [ "GSM610615", "GSM610616", "GSM610617" ], "type": "cell type", "id": "GDS4286_2" }, { "dataset_id": "GDS4286", "description": "MOZ-TIF2 oncogene transduction", "sample_id": [ "GSM610622", "GSM610623", "GSM610624", "GSM610625" ], "type": "protocol", "id": "GDS4286_3" }, { "dataset_id": "GDS4286", "description": "NUP98-HOXA9 oncogene transduction", "sample_id": [ "GSM610626", "GSM610627", "GSM610628" ], "type": "protocol", "id": "GDS4286_4" }, { "dataset_id": "GDS4286", "description": "AML1-ETO oncogene transduction", "sample_id": [ "GSM610629", "GSM610630", "GSM610631", "GSM610632" ], "type": "protocol", "id": "GDS4286_5" }, { "dataset_id": "GDS4286", "description": "empty vector transduction", "sample_id": [ "GSM610633", "GSM610634", "GSM610635" ], "type": "protocol", "id": "GDS4286_6" }, { "dataset_id": "GDS4286", "description": "no transduction", "sample_id": [ "GSM610615", "GSM610616", "GSM610617" ], "type": "protocol", "id": "GDS4286_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4286", "version": 1.0, "instances": "17", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4286.tab", "compression": "gz" } ], [ [ "GDS4287.tab" ], { "title": "Effect of Tet2 loss in bone marrow progenitors", "description": "Analysis of sorted bone marrow progenitor populations (LSK, CMP, GMP) deficient in ten-eleven translocation 2 (TET2). Tet2 loss causes increased hematopoietic stem cell self-renewal and myeloid transformation. Results provide insight into the molecular mechanisms underlying myeloid malignancies.", "type": "Expression profiling by array", "pubmed_id": "21723200", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE27816", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4287", "description": "wild type", "sample_id": [ "GSM686819", "GSM686818", "GSM686827", "GSM686826", "GSM686823", "GSM686822" ], "type": "genotype/variation", "id": "GDS4287_1" }, { "dataset_id": "GDS4287", "description": "TET2 knockout", "sample_id": [ "GSM686821", "GSM686820", "GSM686829", "GSM686828", "GSM686825", "GSM686824", "GSM686831", "GSM686830" ], "type": "genotype/variation", "id": "GDS4287_2" }, { "dataset_id": "GDS4287", "description": "LSK", "sample_id": [ "GSM686818", "GSM686819", "GSM686820", "GSM686821" ], "type": "cell type", "id": "GDS4287_3" }, { "dataset_id": "GDS4287", "description": "CMP", "sample_id": [ "GSM686822", "GSM686823", "GSM686824", "GSM686825" ], "type": "cell type", "id": "GDS4287_4" }, { "dataset_id": "GDS4287", "description": "GMP", "sample_id": [ "GSM686826", "GSM686827", "GSM686828", "GSM686829" ], "type": "cell type", "id": "GDS4287_5" }, { "dataset_id": "GDS4287", "description": "LSK CD150+ sorted", "sample_id": [ "GSM686830", "GSM686831" ], "type": "cell type", "id": "GDS4287_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4287", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4287.tab", "compression": "gz" } ], [ [ "GDS4288.tab" ], { "title": "3-Deazaneplanocin A effect on multiple myeloma cells", "description": "Analysis of MM cell lines (KMS18, MM.1S, NCI-H929, OPM-2) exposed to 500nM 3-Deazaneplanocin A (DZNep). DZNep potently inhibited growth and induced apoptosis in the NCI-H929 and MM.1S cell lines. Results provide insight into the molecular mechanisms underlying DZNep-induced apoptosis in MM cells.", "type": "Expression profiling by array", "pubmed_id": "21720561", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE26921", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4288", "description": "KMS18", "sample_id": [ "GSM662891", "GSM662892" ], "type": "cell line", "id": "GDS4288_1" }, { "dataset_id": "GDS4288", "description": "MM.1S", "sample_id": [ "GSM662889", "GSM662890" ], "type": "cell line", "id": "GDS4288_2" }, { "dataset_id": "GDS4288", "description": "NCI-H929", "sample_id": [ "GSM662887", "GSM662888" ], "type": "cell line", "id": "GDS4288_3" }, { "dataset_id": "GDS4288", "description": "OPM-2", "sample_id": [ "GSM662893", "GSM662894" ], "type": "cell line", "id": "GDS4288_4" }, { "dataset_id": "GDS4288", "description": "control", "sample_id": [ "GSM662891", "GSM662889", "GSM662887", "GSM662893" ], "type": "agent", "id": "GDS4288_5" }, { "dataset_id": "GDS4288", "description": "DZNep", "sample_id": [ "GSM662892", "GSM662890", "GSM662888", "GSM662894" ], "type": "agent", "id": "GDS4288_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4288", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4288.tab", "compression": "gz" } ], [ [ "GDS4289.tab" ], { "title": "Notch-on and Notch-off effects on T-lymphoblastic leukemia cell line CUTLL1: time course", "description": "Analysis of Notch1-dependent TLL cell line CUTLL1 treated with \u03b3-secretase-inhibitor (GSI) to block Notch signaling, subjected to GSI washout to induce Notch1 reactivation, and incubated up to 4hr with translational inhibitor cycloheximide. Results provide insight into Notch1 function in TLL.", "type": "Expression profiling by array", "pubmed_id": "21737748", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE29544", "order": "none", "update_date": "Jan 14 2014", "subsets": [ { "dataset_id": "GDS4289", "description": "CUTLL1", "sample_id": [ "GSM731500", "GSM731501", "GSM731502", "GSM731518", "GSM731519", "GSM731520", "GSM731503", "GSM731504", "GSM731505", "GSM731506", "GSM731507", "GSM731508", "GSM731509", "GSM731510", "GSM731511", "GSM731512", "GSM731513", "GSM731514", "GSM731515", "GSM731516", "GSM731517", "GSM731521", "GSM731522", "GSM731523", "GSM731524", "GSM731525", "GSM731526" ], "type": "cell line", "id": "GDS4289_1" }, { "dataset_id": "GDS4289", "description": "CUTLL1 (MigR1 transduced)", "sample_id": [ "GSM731527", "GSM731528", "GSM731529", "GSM731531", "GSM731532", "GSM731533", "GSM731534", "GSM731535", "GSM731536" ], "type": "cell line", "id": "GDS4289_2" }, { "dataset_id": "GDS4289", "description": "CUTLL1 (DN-MAML transduced)", "sample_id": [ "GSM731537", "GSM731538", "GSM731539", "GSM731540", "GSM731541", "GSM731542", "GSM731543", "GSM731544", "GSM731545" ], "type": "cell line", "id": "GDS4289_3" }, { "dataset_id": "GDS4289", "description": "vehicle", "sample_id": [ "GSM731500", "GSM731501", "GSM731502" ], "type": "agent", "id": "GDS4289_4" }, { "dataset_id": "GDS4289", "description": "GSI", "sample_id": [ "GSM731503", "GSM731504", "GSM731505" ], "type": "agent", "id": "GDS4289_5" }, { "dataset_id": "GDS4289", "description": "GSI 3d", "sample_id": [ "GSM731518", "GSM731519", "GSM731520", "GSM731527", "GSM731528", "GSM731529", "GSM731537", "GSM731538", "GSM731539", "GSM731506", "GSM731507", "GSM731508", "GSM731531", "GSM731532", "GSM731533", "GSM731540", "GSM731541", "GSM731542", "GSM731509", "GSM731510", "GSM731511", "GSM731512", "GSM731513", "GSM731514", "GSM731534", "GSM731535", "GSM731536", "GSM731543", "GSM731544", "GSM731545", "GSM731515", "GSM731516", "GSM731517", "GSM731521", "GSM731522", "GSM731523", "GSM731524", "GSM731525", "GSM731526" ], "type": "agent", "id": "GDS4289_6" }, { "dataset_id": "GDS4289", "description": "none", "sample_id": [ "GSM731500", "GSM731501", "GSM731502", "GSM731503", "GSM731504", "GSM731505", "GSM731518", "GSM731519", "GSM731520", "GSM731527", "GSM731528", "GSM731529", "GSM731537", "GSM731538", "GSM731539" ], "type": "protocol", "id": "GDS4289_7" }, { "dataset_id": "GDS4289", "description": "washout 2h", "sample_id": [ "GSM731506", "GSM731507", "GSM731508", "GSM731531", "GSM731532", "GSM731533", "GSM731540", "GSM731541", "GSM731542" ], "type": "protocol", "id": "GDS4289_8" }, { "dataset_id": "GDS4289", "description": "washout + CHX 2h", "sample_id": [ "GSM731509", "GSM731510", "GSM731511" ], "type": "protocol", "id": "GDS4289_9" }, { "dataset_id": "GDS4289", "description": "washout 4h", "sample_id": [ "GSM731512", "GSM731513", "GSM731514", "GSM731534", "GSM731535", "GSM731536", "GSM731543", "GSM731544", "GSM731545" ], "type": "protocol", "id": "GDS4289_10" }, { "dataset_id": "GDS4289", "description": "washout + CHX 4h", "sample_id": [ "GSM731515", "GSM731516", "GSM731517" ], "type": "protocol", "id": "GDS4289_11" }, { "dataset_id": "GDS4289", "description": "mock washout + CHX 2h", "sample_id": [ "GSM731521", "GSM731522", "GSM731523" ], "type": "protocol", "id": "GDS4289_12" }, { "dataset_id": "GDS4289", "description": "mock washout + CHX 4h", "sample_id": [ "GSM731524", "GSM731525", "GSM731526" ], "type": "protocol", "id": "GDS4289_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4289", "version": 1.0, "instances": "45", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4289.tab", "compression": "gz" } ], [ [ "GDS429.tab" ], { "title": "Stem cell self renewal and Bmi-1 (MG-U74B)", "description": "Molecular basis of renewal properties in Bmi-1-deficient central and peripheral nervous system stem cells. Bmi-1 is a polycomb transcriptional repressor. Forebrain and gut neurospheres cultured from postnatal day 0 Bmi-1 -/- and wild type mice compared.", "type": "Expression profiling by array", "pubmed_id": "14574365", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE611", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS429", "description": "Bmi-1 -/-", "sample_id": [ "GSM9242", "GSM9244" ], "type": "strain", "id": "GDS429_1" }, { "dataset_id": "GDS429", "description": "wild type", "sample_id": [ "GSM9243", "GSM9245" ], "type": "strain", "id": "GDS429_2" }, { "dataset_id": "GDS429", "description": "brain neurosphere", "sample_id": [ "GSM9242", "GSM9243" ], "type": "cell type", "id": "GDS429_3" }, { "dataset_id": "GDS429", "description": "gut neurosphere", "sample_id": [ "GSM9244", "GSM9245" ], "type": "cell type", "id": "GDS429_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS429", "version": 1.0, "instances": "4", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS429.tab", "compression": "gz" } ], [ [ "GDS4290.tab" ], { "title": "Small-molecule DOT1L inhibitor EPZ004777 effect on mixed lineage leukemia cells: time course", "description": "Temporal analysis of mixed lineage leukemia (MLL)-rearranged cell lines MV4-11 and MOLM-13 treated with EPZ004777, a potent inhibitor of DOT1L histone methyl transferase. EPZ004777 induces differentiation and apoptosis in MLL-rearranged cells. Results provide insight into role of DOT1L in MLL cells.", "type": "Expression profiling by array", "pubmed_id": "21741596", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE29828", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4290", "description": "MV4-11", "sample_id": [ "GSM739148", "GSM739149", "GSM739150", "GSM739151", "GSM739152", "GSM739153", "GSM739154", "GSM739155", "GSM739156", "GSM739157", "GSM739158", "GSM739159", "GSM739160", "GSM739161", "GSM739162", "GSM739163", "GSM739164", "GSM739165" ], "type": "cell line", "id": "GDS4290_1" }, { "dataset_id": "GDS4290", "description": "MOLM-13", "sample_id": [ "GSM739166", "GSM739167", "GSM739168", "GSM739169", "GSM739170", "GSM739171" ], "type": "cell line", "id": "GDS4290_2" }, { "dataset_id": "GDS4290", "description": "control", "sample_id": [ "GSM739165", "GSM739171", "GSM739164", "GSM739170", "GSM739163", "GSM739169", "GSM739159", "GSM739158", "GSM739157", "GSM739153", "GSM739152", "GSM739151" ], "type": "agent", "id": "GDS4290_3" }, { "dataset_id": "GDS4290", "description": "EPZ004777", "sample_id": [ "GSM739162", "GSM739168", "GSM739161", "GSM739167", "GSM739160", "GSM739166", "GSM739156", "GSM739155", "GSM739154", "GSM739150", "GSM739149", "GSM739148" ], "type": "agent", "id": "GDS4290_4" }, { "dataset_id": "GDS4290", "description": "day 2", "sample_id": [ "GSM739151", "GSM739152", "GSM739153", "GSM739148", "GSM739149", "GSM739150" ], "type": "time", "id": "GDS4290_5" }, { "dataset_id": "GDS4290", "description": "day 4", "sample_id": [ "GSM739157", "GSM739158", "GSM739159", "GSM739154", "GSM739155", "GSM739156" ], "type": "time", "id": "GDS4290_6" }, { "dataset_id": "GDS4290", "description": "day 6", "sample_id": [ "GSM739163", "GSM739164", "GSM739165", "GSM739160", "GSM739161", "GSM739162", "GSM739169", "GSM739170", "GSM739171", "GSM739166", "GSM739167", "GSM739168" ], "type": "time", "id": "GDS4290_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4290", "version": 1.0, "instances": "24", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4290.tab", "compression": "gz" } ], [ [ "GDS4291.tab" ], { "title": "Inhibition of Notch signaling in T cell acute lymphoblastic leukemia cell lines", "description": "Analysis of T-ALL cell lines treated with \u03b3-secretase inhibitor (GSI) to block Notch signaling. Cell lines include parental cells and cells transduced with ICN (a GSI-independent form of activated Notch1) or with c-Myc (a downstream Notch1 target). Results provide insight into Notch1 role in T-ALL.", "type": "Expression profiling by array", "pubmed_id": "21807868", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE29959", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4291", "description": "ALLSIL", "sample_id": [ "GSM741305", "GSM741306", "GSM741307", "GSM741308", "GSM741309", "GSM741310" ], "type": "cell line", "id": "GDS4291_1" }, { "dataset_id": "GDS4291", "description": "DND41", "sample_id": [ "GSM741311", "GSM741312", "GSM741313", "GSM741314", "GSM741315", "GSM741316" ], "type": "cell line", "id": "GDS4291_2" }, { "dataset_id": "GDS4291", "description": "HPBALL", "sample_id": [ "GSM741317", "GSM741318", "GSM741319", "GSM741320", "GSM741321", "GSM741322" ], "type": "cell line", "id": "GDS4291_3" }, { "dataset_id": "GDS4291", "description": "KOPTK1", "sample_id": [ "GSM741323", "GSM741324", "GSM741325", "GSM741326", "GSM741327", "GSM741328" ], "type": "cell line", "id": "GDS4291_4" }, { "dataset_id": "GDS4291", "description": "TALL-1", "sample_id": [ "GSM741329", "GSM741330", "GSM741331", "GSM741332", "GSM741333", "GSM741334" ], "type": "cell line", "id": "GDS4291_5" }, { "dataset_id": "GDS4291", "description": "ICN1-transduced", "sample_id": [ "GSM741307", "GSM741308", "GSM741313", "GSM741314", "GSM741319", "GSM741320", "GSM741325", "GSM741326", "GSM741331", "GSM741332" ], "type": "genotype/variation", "id": "GDS4291_6" }, { "dataset_id": "GDS4291", "description": "cMyc-transduced", "sample_id": [ "GSM741309", "GSM741310", "GSM741315", "GSM741316", "GSM741321", "GSM741322", "GSM741327", "GSM741328", "GSM741333", "GSM741334" ], "type": "genotype/variation", "id": "GDS4291_7" }, { "dataset_id": "GDS4291", "description": "parental", "sample_id": [ "GSM741305", "GSM741306", "GSM741311", "GSM741312", "GSM741317", "GSM741318", "GSM741323", "GSM741324", "GSM741329", "GSM741330" ], "type": "genotype/variation", "id": "GDS4291_8" }, { "dataset_id": "GDS4291", "description": "GSI", "sample_id": [ "GSM741306", "GSM741312", "GSM741318", "GSM741324", "GSM741330", "GSM741308", "GSM741310", "GSM741314", "GSM741316", "GSM741320", "GSM741322", "GSM741326", "GSM741328", "GSM741332", "GSM741334" ], "type": "agent", "id": "GDS4291_9" }, { "dataset_id": "GDS4291", "description": "control", "sample_id": [ "GSM741305", "GSM741311", "GSM741317", "GSM741323", "GSM741329", "GSM741307", "GSM741309", "GSM741313", "GSM741315", "GSM741319", "GSM741321", "GSM741325", "GSM741327", "GSM741331", "GSM741333" ], "type": "agent", "id": "GDS4291_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4291", "version": 1.0, "instances": "30", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4291.tab", "compression": "gz" } ], [ [ "GDS4294.tab" ], { "title": "All-trans retinoic acid effect on retinoic acid receptor \u03b1-deficient F9 teratocarcinoma cells", "description": "Analysis of F9 teratocarcinoma cells depleted of retinoic acid receptor (RAR)\u03b1 and treated with all trans retinoic acid (atRA) in the presence of cycloheximide. RAR\u03b1 translocation events are associated with acute promyelocytic leukemia (APL). Results provide insight into the role of RAR\u03b1 in APL.", "type": "Expression profiling by array", "pubmed_id": "21911359", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE31280", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4294", "description": "RARa knockout", "sample_id": [ "GSM775291", "GSM775295", "GSM775299", "GSM775292", "GSM775296", "GSM775300" ], "type": "genotype/variation", "id": "GDS4294_1" }, { "dataset_id": "GDS4294", "description": "wild type", "sample_id": [ "GSM775293", "GSM775297", "GSM775301", "GSM775294", "GSM775298", "GSM775302" ], "type": "genotype/variation", "id": "GDS4294_2" }, { "dataset_id": "GDS4294", "description": "control", "sample_id": [ "GSM775291", "GSM775295", "GSM775299", "GSM775293", "GSM775297", "GSM775301" ], "type": "agent", "id": "GDS4294_3" }, { "dataset_id": "GDS4294", "description": "all trans retinoic acid", "sample_id": [ "GSM775292", "GSM775296", "GSM775300", "GSM775294", "GSM775298", "GSM775302" ], "type": "agent", "id": "GDS4294_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4294", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4294.tab", "compression": "gz" } ], [ [ "GDS4295.tab" ], { "title": "Histone methyltransferase H3K79 Dot1l deletion effect on MLL-AF9 leukemia cells: time course", "description": "Analysis of Mixed Lineage Leukemia (MLL)-AF9 leukemia cells after loss of Dot1l for up to 7 days. Loss of Dot1l leads to decreased growth, differentiation, and apoptosis of MLL-AF9 cells. Results provide insight into role of Dot1l in MLL-rearranged leukemia.", "type": "Expression profiling by array", "pubmed_id": "21741597", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE25911", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4295", "description": "Dot1l -/-", "sample_id": [ "GSM636698", "GSM636699", "GSM636700", "GSM636701", "GSM636702", "GSM636707", "GSM636708", "GSM636709", "GSM636710", "GSM636711", "GSM636717", "GSM636718", "GSM636719" ], "type": "genotype/variation", "id": "GDS4295_1" }, { "dataset_id": "GDS4295", "description": "control", "sample_id": [ "GSM636703", "GSM636704", "GSM636705", "GSM636706", "GSM636712", "GSM636713", "GSM636714", "GSM636715", "GSM636716", "GSM636720", "GSM636721", "GSM636722", "GSM636723" ], "type": "genotype/variation", "id": "GDS4295_2" }, { "dataset_id": "GDS4295", "description": "3 days", "sample_id": [ "GSM636698", "GSM636699", "GSM636700", "GSM636701", "GSM636702", "GSM636703", "GSM636704", "GSM636705", "GSM636706" ], "type": "time", "id": "GDS4295_3" }, { "dataset_id": "GDS4295", "description": "5 days", "sample_id": [ "GSM636707", "GSM636708", "GSM636709", "GSM636710", "GSM636711", "GSM636712", "GSM636713", "GSM636714", "GSM636715", "GSM636716" ], "type": "time", "id": "GDS4295_4" }, { "dataset_id": "GDS4295", "description": "7 days", "sample_id": [ "GSM636717", "GSM636718", "GSM636719", "GSM636720", "GSM636721", "GSM636722", "GSM636723" ], "type": "time", "id": "GDS4295_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4295", "version": 1.0, "instances": "26", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4295.tab", "compression": "gz" } ], [ [ "GDS4296.tab" ], { "title": "NCI-60 cancer cell line panel", "description": "Analysis of cell lines from 9 different cancer tissue of origin types (Breast, Central Nervous System, Colon, Leukemia, Melanoma, Non-Small Cell Lung, Ovarian, Prostate, and Renal) from the NCI-60 panel. Results provide insight into molecular mechanisms underlying the various cancer types.", "type": "Expression profiling by array", "pubmed_id": [ "19584232", "24940735" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "174", "value_type": "transformed count", "reference_series": "GSE32474", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4296", "description": "CCRF_CEM", "sample_id": [ "GSM803615", "GSM803674", "GSM803733" ], "type": "cell line", "id": "GDS4296_1" }, { "dataset_id": "GDS4296", "description": "HL_60", "sample_id": [ "GSM803616", "GSM803675", "GSM803734" ], "type": "cell line", "id": "GDS4296_2" }, { "dataset_id": "GDS4296", "description": "MOLT_4", "sample_id": [ "GSM803617", "GSM803676", "GSM803735" ], "type": "cell line", "id": "GDS4296_3" }, { "dataset_id": "GDS4296", "description": "RPMI_8226", "sample_id": [ "GSM803618", "GSM803677", "GSM803736" ], "type": "cell line", "id": "GDS4296_4" }, { "dataset_id": "GDS4296", "description": "SR", "sample_id": [ "GSM803619", "GSM803678", "GSM803737" ], "type": "cell line", "id": "GDS4296_5" }, { "dataset_id": "GDS4296", "description": "K_562", "sample_id": [ "GSM803620", "GSM803679", "GSM803738" ], "type": "cell line", "id": "GDS4296_6" }, { "dataset_id": "GDS4296", "description": "BT_549", "sample_id": [ "GSM803621", "GSM803680", "GSM803739" ], "type": "cell line", "id": "GDS4296_7" }, { "dataset_id": "GDS4296", "description": "HS578T", "sample_id": [ "GSM803622", "GSM803681", "GSM803740" ], "type": "cell line", "id": "GDS4296_8" }, { "dataset_id": "GDS4296", "description": "MCF7", "sample_id": [ "GSM803623", "GSM803682", "GSM803741" ], "type": "cell line", "id": "GDS4296_9" }, { "dataset_id": "GDS4296", "description": "NCI_ADR_RES", "sample_id": [ "GSM803624", "GSM803683", "GSM803742" ], "type": "cell line", "id": "GDS4296_10" }, { "dataset_id": "GDS4296", "description": "MDA_MB_231", "sample_id": [ "GSM803625", "GSM803684", "GSM803743" ], "type": "cell line", "id": "GDS4296_11" }, { "dataset_id": "GDS4296", "description": "MDA_MB_435", "sample_id": [ "GSM803626", "GSM803685", "GSM803744" ], "type": "cell line", "id": "GDS4296_12" }, { "dataset_id": "GDS4296", "description": "SF_268", "sample_id": [ "GSM803627", "GSM803686", "GSM803745" ], "type": "cell line", "id": "GDS4296_13" }, { "dataset_id": "GDS4296", "description": "SF_295", "sample_id": [ "GSM803628", "GSM803687", "GSM803746" ], "type": "cell line", "id": "GDS4296_14" }, { "dataset_id": "GDS4296", "description": "SF_539", "sample_id": [ "GSM803629", "GSM803688", "GSM803747" ], "type": "cell line", "id": "GDS4296_15" }, { "dataset_id": "GDS4296", "description": "SNB_19", "sample_id": [ "GSM803630", "GSM803689", "GSM803748" ], "type": "cell line", "id": "GDS4296_16" }, { "dataset_id": "GDS4296", "description": "SNB_75", "sample_id": [ "GSM803631", "GSM803690", "GSM803749" ], "type": "cell line", "id": "GDS4296_17" }, { "dataset_id": "GDS4296", "description": "U251", "sample_id": [ "GSM803632", "GSM803691", "GSM803750" ], "type": "cell line", "id": "GDS4296_18" }, { "dataset_id": "GDS4296", "description": "COLO205", "sample_id": [ "GSM803633", "GSM803692", "GSM803751" ], "type": "cell line", "id": "GDS4296_19" }, { "dataset_id": "GDS4296", "description": "HCC_2998", "sample_id": [ "GSM803634", "GSM803693", "GSM803752" ], "type": "cell line", "id": "GDS4296_20" }, { "dataset_id": "GDS4296", "description": "HCT_116", "sample_id": [ "GSM803635", "GSM803694", "GSM803753" ], "type": "cell line", "id": "GDS4296_21" }, { "dataset_id": "GDS4296", "description": "HCT_15", "sample_id": [ "GSM803636", "GSM803695", "GSM803754" ], "type": "cell line", "id": "GDS4296_22" }, { "dataset_id": "GDS4296", "description": "HT29", "sample_id": [ "GSM803637", "GSM803696", "GSM803755" ], "type": "cell line", "id": "GDS4296_23" }, { "dataset_id": "GDS4296", "description": "KM12", "sample_id": [ "GSM803638", "GSM803697", "GSM803756" ], "type": "cell line", "id": "GDS4296_24" }, { "dataset_id": "GDS4296", "description": "SW_620", "sample_id": [ "GSM803639", "GSM803698", "GSM803757" ], "type": "cell line", "id": "GDS4296_25" }, { "dataset_id": "GDS4296", "description": "786_0", "sample_id": [ "GSM803640", "GSM803699", "GSM803758" ], "type": "cell line", "id": "GDS4296_26" }, { "dataset_id": "GDS4296", "description": "A498", "sample_id": [ "GSM803641", "GSM803700", "GSM803759" ], "type": "cell line", "id": "GDS4296_27" }, { "dataset_id": "GDS4296", "description": "ACHN", "sample_id": [ "GSM803642", "GSM803701", "GSM803760" ], "type": "cell line", "id": "GDS4296_28" }, { "dataset_id": "GDS4296", "description": "CAKI_1", "sample_id": [ "GSM803643", "GSM803702" ], "type": "cell line", "id": "GDS4296_29" }, { "dataset_id": "GDS4296", "description": "RXF_393", "sample_id": [ "GSM803644", "GSM803703", "GSM803761" ], "type": "cell line", "id": "GDS4296_30" }, { "dataset_id": "GDS4296", "description": "SN12C", "sample_id": [ "GSM803645", "GSM803704", "GSM803762" ], "type": "cell line", "id": "GDS4296_31" }, { "dataset_id": "GDS4296", "description": "TK_10", "sample_id": [ "GSM803646", "GSM803705", "GSM803763" ], "type": "cell line", "id": "GDS4296_32" }, { "dataset_id": "GDS4296", "description": "UO_31", "sample_id": [ "GSM803647", "GSM803706", "GSM803764" ], "type": "cell line", "id": "GDS4296_33" }, { "dataset_id": "GDS4296", "description": "A549", "sample_id": [ "GSM803648", "GSM803707", "GSM803765" ], "type": "cell line", "id": "GDS4296_34" }, { "dataset_id": "GDS4296", "description": "EKVX", "sample_id": [ "GSM803649", "GSM803708", "GSM803766" ], "type": "cell line", "id": "GDS4296_35" }, { "dataset_id": "GDS4296", "description": "HOP_62", "sample_id": [ "GSM803650", "GSM803709", "GSM803767" ], "type": "cell line", "id": "GDS4296_36" }, { "dataset_id": "GDS4296", "description": "HOP_92", "sample_id": [ "GSM803651", "GSM803710", "GSM803768" ], "type": "cell line", "id": "GDS4296_37" }, { "dataset_id": "GDS4296", "description": "NCI_H226", "sample_id": [ "GSM803652", "GSM803711" ], "type": "cell line", "id": "GDS4296_38" }, { "dataset_id": "GDS4296", "description": "NCI_H23", "sample_id": [ "GSM803653", "GSM803712", "GSM803769" ], "type": "cell line", "id": "GDS4296_39" }, { "dataset_id": "GDS4296", "description": "NCI_H322M", "sample_id": [ "GSM803654", "GSM803713", "GSM803770" ], "type": "cell line", "id": "GDS4296_40" }, { "dataset_id": "GDS4296", "description": "NCI_H460", "sample_id": [ "GSM803655", "GSM803714", "GSM803771" ], "type": "cell line", "id": "GDS4296_41" }, { "dataset_id": "GDS4296", "description": "NCI_H522", "sample_id": [ "GSM803656", "GSM803715", "GSM803772" ], "type": "cell line", "id": "GDS4296_42" }, { "dataset_id": "GDS4296", "description": "IGROV1", "sample_id": [ "GSM803657", "GSM803716", "GSM803773" ], "type": "cell line", "id": "GDS4296_43" }, { "dataset_id": "GDS4296", "description": "OVCAR_3", "sample_id": [ "GSM803658", "GSM803717", "GSM803774" ], "type": "cell line", "id": "GDS4296_44" }, { "dataset_id": "GDS4296", "description": "OVCAR_4", "sample_id": [ "GSM803659", "GSM803718", "GSM803775" ], "type": "cell line", "id": "GDS4296_45" }, { "dataset_id": "GDS4296", "description": "OVCAR_5", "sample_id": [ "GSM803660", "GSM803719", "GSM803776" ], "type": "cell line", "id": "GDS4296_46" }, { "dataset_id": "GDS4296", "description": "OVCAR_8", "sample_id": [ "GSM803661", "GSM803720", "GSM803777" ], "type": "cell line", "id": "GDS4296_47" }, { "dataset_id": "GDS4296", "description": "SK_OV_3", "sample_id": [ "GSM803662", "GSM803732", "GSM803778" ], "type": "cell line", "id": "GDS4296_48" }, { "dataset_id": "GDS4296", "description": "DU_145(DTP)", "sample_id": [ "GSM803663", "GSM803721", "GSM803779" ], "type": "cell line", "id": "GDS4296_49" }, { "dataset_id": "GDS4296", "description": "PC_3", "sample_id": [ "GSM803664", "GSM803722", "GSM803780" ], "type": "cell line", "id": "GDS4296_50" }, { "dataset_id": "GDS4296", "description": "LOXIMVI", "sample_id": [ "GSM803665", "GSM803723", "GSM803781" ], "type": "cell line", "id": "GDS4296_51" }, { "dataset_id": "GDS4296", "description": "M14", "sample_id": [ "GSM803666", "GSM803724", "GSM803782" ], "type": "cell line", "id": "GDS4296_52" }, { "dataset_id": "GDS4296", "description": "MALME_3M", "sample_id": [ "GSM803667", "GSM803725", "GSM803783" ], "type": "cell line", "id": "GDS4296_53" }, { "dataset_id": "GDS4296", "description": "SK_MEL_2", "sample_id": [ "GSM803668", "GSM803726", "GSM803784" ], "type": "cell line", "id": "GDS4296_54" }, { "dataset_id": "GDS4296", "description": "SK_MEL_28", "sample_id": [ "GSM803669", "GSM803727" ], "type": "cell line", "id": "GDS4296_55" }, { "dataset_id": "GDS4296", "description": "SK_MEL_5", "sample_id": [ "GSM803670", "GSM803728", "GSM803785" ], "type": "cell line", "id": "GDS4296_56" }, { "dataset_id": "GDS4296", "description": "UACC_257", "sample_id": [ "GSM803671", "GSM803729", "GSM803786" ], "type": "cell line", "id": "GDS4296_57" }, { "dataset_id": "GDS4296", "description": "UACC_62", "sample_id": [ "GSM803672", "GSM803730", "GSM803787" ], "type": "cell line", "id": "GDS4296_58" }, { "dataset_id": "GDS4296", "description": "T47D", "sample_id": [ "GSM803673", "GSM803731", "GSM803788" ], "type": "cell line", "id": "GDS4296_59" }, { "dataset_id": "GDS4296", "description": "breast", "sample_id": [ "GSM803621", "GSM803680", "GSM803739", "GSM803622", "GSM803681", "GSM803740", "GSM803623", "GSM803682", "GSM803741", "GSM803625", "GSM803684", "GSM803743", "GSM803673", "GSM803731", "GSM803788" ], "type": "tissue", "id": "GDS4296_60" }, { "dataset_id": "GDS4296", "description": "CNS", "sample_id": [ "GSM803627", "GSM803686", "GSM803745", "GSM803628", "GSM803687", "GSM803746", "GSM803629", "GSM803688", "GSM803747", "GSM803630", "GSM803689", "GSM803748", "GSM803631", "GSM803690", "GSM803749", "GSM803632", "GSM803691", "GSM803750" ], "type": "tissue", "id": "GDS4296_61" }, { "dataset_id": "GDS4296", "description": "colon", "sample_id": [ "GSM803633", "GSM803692", "GSM803751", "GSM803634", "GSM803693", "GSM803752", "GSM803635", "GSM803694", "GSM803753", "GSM803636", "GSM803695", "GSM803754", "GSM803637", "GSM803696", "GSM803755", "GSM803638", "GSM803697", "GSM803756", "GSM803639", "GSM803698", "GSM803757" ], "type": "tissue", "id": "GDS4296_62" }, { "dataset_id": "GDS4296", "description": "leukemia", "sample_id": [ "GSM803615", "GSM803674", "GSM803733", "GSM803616", "GSM803675", "GSM803734", "GSM803620", "GSM803679", "GSM803738", "GSM803617", "GSM803676", "GSM803735", "GSM803618", "GSM803677", "GSM803736", "GSM803619", "GSM803678", "GSM803737" ], "type": "tissue", "id": "GDS4296_63" }, { "dataset_id": "GDS4296", "description": "non-small cell lung", "sample_id": [ "GSM803648", "GSM803707", "GSM803765", "GSM803649", "GSM803708", "GSM803766", "GSM803650", "GSM803709", "GSM803767", "GSM803651", "GSM803710", "GSM803768", "GSM803652", "GSM803711", "GSM803653", "GSM803712", "GSM803769", "GSM803654", "GSM803713", "GSM803770", "GSM803655", "GSM803714", "GSM803771", "GSM803656", "GSM803715", "GSM803772" ], "type": "tissue", "id": "GDS4296_64" }, { "dataset_id": "GDS4296", "description": "melanoma", "sample_id": [ "GSM803665", "GSM803723", "GSM803781", "GSM803666", "GSM803724", "GSM803782", "GSM803667", "GSM803725", "GSM803783", "GSM803626", "GSM803685", "GSM803744", "GSM803668", "GSM803726", "GSM803784", "GSM803669", "GSM803727", "GSM803670", "GSM803728", "GSM803785", "GSM803671", "GSM803729", "GSM803786", "GSM803672", "GSM803730", "GSM803787" ], "type": "tissue", "id": "GDS4296_65" }, { "dataset_id": "GDS4296", "description": "ovarian", "sample_id": [ "GSM803657", "GSM803716", "GSM803773", "GSM803624", "GSM803683", "GSM803742", "GSM803658", "GSM803717", "GSM803774", "GSM803659", "GSM803718", "GSM803775", "GSM803660", "GSM803719", "GSM803776", "GSM803661", "GSM803720", "GSM803777", "GSM803662", "GSM803732", "GSM803778" ], "type": "tissue", "id": "GDS4296_66" }, { "dataset_id": "GDS4296", "description": "prostate", "sample_id": [ "GSM803663", "GSM803721", "GSM803779", "GSM803664", "GSM803722", "GSM803780" ], "type": "tissue", "id": "GDS4296_67" }, { "dataset_id": "GDS4296", "description": "renal", "sample_id": [ "GSM803640", "GSM803699", "GSM803758", "GSM803641", "GSM803700", "GSM803759", "GSM803642", "GSM803701", "GSM803760", "GSM803643", "GSM803702", "GSM803644", "GSM803703", "GSM803761", "GSM803645", "GSM803704", "GSM803762", "GSM803646", "GSM803705", "GSM803763", "GSM803647", "GSM803706", "GSM803764" ], "type": "tissue", "id": "GDS4296_68" }, { "dataset_id": "GDS4296", "description": "Adenocarcinoma", "sample_id": [ "GSM803633", "GSM803636", "GSM803637", "GSM803692", "GSM803695", "GSM803696", "GSM803751", "GSM803754", "GSM803755", "GSM803648", "GSM803649", "GSM803653", "GSM803656", "GSM803707", "GSM803708", "GSM803712", "GSM803715", "GSM803765", "GSM803766", "GSM803769", "GSM803772", "GSM803624", "GSM803658", "GSM803659", "GSM803660", "GSM803662", "GSM803683", "GSM803717", "GSM803718", "GSM803719", "GSM803732", "GSM803742", "GSM803774", "GSM803775", "GSM803776", "GSM803778", "GSM803640", "GSM803641", "GSM803699", "GSM803700", "GSM803758", "GSM803759", "GSM803638", "GSM803697", "GSM803756", "GSM803650", "GSM803709", "GSM803767" ], "type": "disease state", "id": "GDS4296_69" }, { "dataset_id": "GDS4296", "description": "Adenocarcinoma", "sample_id": [ "GSM803625", "GSM803684", "GSM803743", "GSM803623", "GSM803682", "GSM803741" ], "type": "disease state", "id": "GDS4296_70" }, { "dataset_id": "GDS4296", "description": "Adenocarcinoma", "sample_id": [ "GSM803664", "GSM803722", "GSM803780", "GSM803663", "GSM803721", "GSM803779" ], "type": "disease state", "id": "GDS4296_71" }, { "dataset_id": "GDS4296", "description": "Acute lymphoblastic leukemia", "sample_id": [ "GSM803615", "GSM803617", "GSM803674", "GSM803676", "GSM803733", "GSM803735" ], "type": "disease state", "id": "GDS4296_72" }, { "dataset_id": "GDS4296", "description": "Astrocytoma", "sample_id": [ "GSM803631", "GSM803690", "GSM803749" ], "type": "disease state", "id": "GDS4296_73" }, { "dataset_id": "GDS4296", "description": "Chronic myelogenous leukemia", "sample_id": [ "GSM803620", "GSM803679", "GSM803738" ], "type": "disease state", "id": "GDS4296_74" }, { "dataset_id": "GDS4296", "description": "Carcinoma", "sample_id": [ "GSM803639", "GSM803698", "GSM803757", "GSM803661", "GSM803720", "GSM803777", "GSM803634", "GSM803635", "GSM803693", "GSM803694", "GSM803752", "GSM803753" ], "type": "disease state", "id": "GDS4296_75" }, { "dataset_id": "GDS4296", "description": "Carcinosarcoma", "sample_id": [ "GSM803622", "GSM803681", "GSM803740" ], "type": "disease state", "id": "GDS4296_76" }, { "dataset_id": "GDS4296", "description": "Clear cell carcinoma", "sample_id": [ "GSM803643", "GSM803702" ], "type": "disease state", "id": "GDS4296_77" }, { "dataset_id": "GDS4296", "description": "Cystoadenocarcinoma", "sample_id": [ "GSM803657", "GSM803716", "GSM803773" ], "type": "disease state", "id": "GDS4296_78" }, { "dataset_id": "GDS4296", "description": "Ductal carcinoma", "sample_id": [ "GSM803626", "GSM803685", "GSM803744" ], "type": "disease state", "id": "GDS4296_79" }, { "dataset_id": "GDS4296", "description": "Glial cell neoplasm", "sample_id": [ "GSM803629", "GSM803688", "GSM803747" ], "type": "disease state", "id": "GDS4296_80" }, { "dataset_id": "GDS4296", "description": "Glioblastoma", "sample_id": [ "GSM803627", "GSM803628", "GSM803630", "GSM803632", "GSM803686", "GSM803687", "GSM803689", "GSM803691", "GSM803745", "GSM803746", "GSM803748", "GSM803750" ], "type": "disease state", "id": "GDS4296_81" }, { "dataset_id": "GDS4296", "description": "Large cell carcinoma", "sample_id": [ "GSM803655", "GSM803714", "GSM803771", "GSM803651", "GSM803710", "GSM803768" ], "type": "disease state", "id": "GDS4296_82" }, { "dataset_id": "GDS4296", "description": "Lymphoma", "sample_id": [ "GSM803619", "GSM803678", "GSM803737" ], "type": "disease state", "id": "GDS4296_83" }, { "dataset_id": "GDS4296", "description": "Malignant amelanotic melanoma", "sample_id": [ "GSM803665", "GSM803723", "GSM803781" ], "type": "disease state", "id": "GDS4296_84" }, { "dataset_id": "GDS4296", "description": "Malignant melanotic melanoma", "sample_id": [ "GSM803667", "GSM803668", "GSM803669", "GSM803670", "GSM803725", "GSM803726", "GSM803727", "GSM803728", "GSM803783", "GSM803784", "GSM803785" ], "type": "disease state", "id": "GDS4296_85" }, { "dataset_id": "GDS4296", "description": "Melanotic melanoma", "sample_id": [ "GSM803666", "GSM803671", "GSM803672", "GSM803724", "GSM803729", "GSM803730", "GSM803782", "GSM803786", "GSM803787" ], "type": "disease state", "id": "GDS4296_86" }, { "dataset_id": "GDS4296", "description": "Myeloma", "sample_id": [ "GSM803618", "GSM803677", "GSM803736" ], "type": "disease state", "id": "GDS4296_87" }, { "dataset_id": "GDS4296", "description": "Papillary infiltrating ductal carcinoma", "sample_id": [ "GSM803621", "GSM803680", "GSM803739" ], "type": "disease state", "id": "GDS4296_88" }, { "dataset_id": "GDS4296", "description": "Pro myelocytic leukemia", "sample_id": [ "GSM803616", "GSM803675", "GSM803734" ], "type": "disease state", "id": "GDS4296_89" }, { "dataset_id": "GDS4296", "description": "Renal spindle cell carcinoma", "sample_id": [ "GSM803646", "GSM803705", "GSM803763" ], "type": "disease state", "id": "GDS4296_90" }, { "dataset_id": "GDS4296", "description": "Renal cell carcinoma", "sample_id": [ "GSM803642", "GSM803645", "GSM803647", "GSM803701", "GSM803704", "GSM803706", "GSM803760", "GSM803762", "GSM803764" ], "type": "disease state", "id": "GDS4296_91" }, { "dataset_id": "GDS4296", "description": "Small cell bronchioalveolar carcinoma", "sample_id": [ "GSM803654", "GSM803713", "GSM803770" ], "type": "disease state", "id": "GDS4296_92" }, { "dataset_id": "GDS4296", "description": "Squamous cell carcinoma", "sample_id": [ "GSM803652", "GSM803711" ], "type": "disease state", "id": "GDS4296_93" }, { "dataset_id": "GDS4296", "description": "Hypernephroma", "sample_id": [ "GSM803644", "GSM803703", "GSM803761" ], "type": "disease state", "id": "GDS4296_94" }, { "dataset_id": "GDS4296", "description": "Infiltrating ductal carcinoma", "sample_id": [ "GSM803673", "GSM803731", "GSM803788" ], "type": "disease state", "id": "GDS4296_95" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4296", "version": 1.0, "instances": "174", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4296.tab", "compression": "gz" } ], [ [ "GDS4297.tab" ], { "title": "MLL-rearranged infant acute lymphoblastic leukemia in vitro resistant to prednisolone", "description": "Analysis of primary MLL-rearranged ALL samples (>90% leukemic blasts) from untreated infants. In vitro prednisolone sensitivity was assessed by a 4day cytotoxicity (MTT) assay. Results provide insight into the molecular basis of glucocorticoid resistance in MLL-rearranged infant ALL patients.", "type": "Expression profiling by array", "pubmed_id": "22282267", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "transformed count", "reference_series": "GSE32962", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4297", "description": "in vitro prednisolone-resistant, MLL-rearranged infant ALL", "sample_id": [ "GSM816393", "GSM816394", "GSM816395", "GSM816396", "GSM816397", "GSM816398", "GSM816399", "GSM816400", "GSM816401", "GSM816402", "GSM816403", "GSM816404", "GSM816405", "GSM816406", "GSM816407", "GSM816408", "GSM816409", "GSM816410", "GSM816411", "GSM816412", "GSM816413", "GSM816414", "GSM816415", "GSM816416" ], "type": "disease state", "id": "GDS4297_1" }, { "dataset_id": "GDS4297", "description": "in vitro prednisolone-sensitive, MLL-rearranged infant ALL", "sample_id": [ "GSM816417", "GSM816418", "GSM816419", "GSM816420", "GSM816421", "GSM816422", "GSM816423", "GSM816424", "GSM816425", "GSM816426", "GSM816427", "GSM816428", "GSM816429", "GSM816430", "GSM816431", "GSM816432", "GSM816433", "GSM816434", "GSM816435" ], "type": "disease state", "id": "GDS4297_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4297", "version": 1.0, "instances": "43", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4297.tab", "compression": "gz" } ], [ [ "GDS4298.tab" ], { "title": "Leukemia-specific fusion gene ETV6/RUNX1 knockdown effect on ETV6/RUNX1-positive, B-cell precursor acute lymphoblastic leukemia cell lines", "description": "Analysis of ETV6/RUNX1 (E/R) fusion gene-positive, BCP ALL cell lines (AT2 and REH) following E/R knockdown. E/R (also known as TEL/AML1) is the most frequent gene fusion in childhood ALL. Results provide insight into role of E/R gene fusion in leukemia propagation and maintenance.", "type": "Expression profiling by array", "pubmed_id": "22028862", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE29639", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4298", "description": "control non targeting treatment", "sample_id": [ "GSM734473", "GSM734475", "GSM734477", "GSM734479", "GSM734481" ], "type": "protocol", "id": "GDS4298_1" }, { "dataset_id": "GDS4298", "description": "E/R targeting shRNA treatment", "sample_id": [ "GSM734474", "GSM734476", "GSM734478", "GSM734480", "GSM734482" ], "type": "protocol", "id": "GDS4298_2" }, { "dataset_id": "GDS4298", "description": "AT2 E/R positive leukemia", "sample_id": [ "GSM734473", "GSM734475", "GSM734474", "GSM734476" ], "type": "cell line", "id": "GDS4298_3" }, { "dataset_id": "GDS4298", "description": "REH E/R positive leukemia", "sample_id": [ "GSM734477", "GSM734479", "GSM734481", "GSM734478", "GSM734480", "GSM734482" ], "type": "cell line", "id": "GDS4298_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4298", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4298.tab", "compression": "gz" } ], [ [ "GDS4299.tab" ], { "title": "Early T-cell precursor acute lymphoblastic leukemia", "description": "Analysis of tumor cells from pediatric patients with early T-cell precursor acute lymphoblastic leukemia (ETP ALL). The ETP ALL subtype has a poor prognosis when treated with standard chemotherapy. Results provide insight into the molecular mechanisms underlying ETP ALL.", "type": "Expression profiling by array", "pubmed_id": [ "22237106", "21878675" ], "platform": "GPL13158", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54715", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "transformed count", "reference_series": "GSE28703", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4299", "description": "ETP ALL", "sample_id": [ "GSM710838", "GSM710840", "GSM710842", "GSM710844", "GSM710847", "GSM710848", "GSM710850", "GSM710931", "GSM710932", "GSM710933", "GSM710934", "GSM710935" ], "type": "disease state", "id": "GDS4299_1" }, { "dataset_id": "GDS4299", "description": "non-ETP ALL", "sample_id": [ "GSM710851", "GSM710852", "GSM710854", "GSM710856", "GSM710857", "GSM710859", "GSM710861", "GSM710864", "GSM710866", "GSM710868", "GSM710870", "GSM710872", "GSM710874", "GSM710876", "GSM710878", "GSM710880", "GSM710882", "GSM710884", "GSM710887", "GSM710889", "GSM710891", "GSM710893", "GSM710895", "GSM710897", "GSM710899", "GSM710901", "GSM710903", "GSM710904", "GSM710907", "GSM710909", "GSM710910", "GSM710912", "GSM710914", "GSM710917", "GSM710919", "GSM710921", "GSM710923", "GSM710925", "GSM710927", "GSM710929" ], "type": "disease state", "id": "GDS4299_2" } ], "taxid": "9606", "genes": 31654, "aggregation_function": "mean", "name": "GDS4299", "version": 1.0, "instances": "52", "variables": 31656, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4299.tab", "compression": "gz" } ], [ [ "GDS430.tab" ], { "title": "Stem cell self renewal and Bmi-1 (MG-U74C)", "description": "Molecular basis of renewal properties in Bmi-1-deficient central and peripheral nervous system stem cells. Bmi-1 is a polycomb transcriptional repressor. Forebrain and gut neurospheres cultured from postnatal day 0 Bmi-1 -/- and wild type mice compared.", "type": "Expression profiling by array", "pubmed_id": "14574365", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE611", "order": "none", "update_date": "Nov 14 2003", "subsets": [ { "dataset_id": "GDS430", "description": "Bmi-1 -/-", "sample_id": [ "GSM9247", "GSM9251" ], "type": "strain", "id": "GDS430_1" }, { "dataset_id": "GDS430", "description": "wild type", "sample_id": [ "GSM9250", "GSM9252" ], "type": "strain", "id": "GDS430_2" }, { "dataset_id": "GDS430", "description": "brain neurosphere", "sample_id": [ "GSM9247", "GSM9250" ], "type": "cell type", "id": "GDS430_3" }, { "dataset_id": "GDS430", "description": "gut neurosphere", "sample_id": [ "GSM9251", "GSM9252" ], "type": "cell type", "id": "GDS430_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS430", "version": 1.0, "instances": "4", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS430.tab", "compression": "gz" } ], [ [ "GDS4300.tab" ], { "title": "PICALM-MLLT10 positive acute leukemia: mononuclear cells", "description": "Analysis of mononuclear cells from PICALM-MLLT10-positive T-cell acute lymphoblastic leukemia (T-ALL) patients (2 cases with histone methyltransferase gene EZH2 mutations) and PICALM-MLLT10-negative T-ALL patients. Results provide insight into molecular mechanisms underlying the leukemia subtypes.", "type": "Expression profiling by array", "pubmed_id": "22235851", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE30599", "order": "none", "update_date": "Jan 08 2014", "subsets": [ { "dataset_id": "GDS4300", "description": "EZH2-mutated", "sample_id": [ "GSM759015", "GSM759018" ], "type": "genotype/variation", "id": "GDS4300_1" }, { "dataset_id": "GDS4300", "description": "EZH2-unmutated", "sample_id": [ "GSM759014", "GSM759016", "GSM759017", "GSM759019", "GSM759021", "GSM759022", "GSM759023", "GSM759024", "GSM759025", "GSM759026", "GSM759027", "GSM759028", "GSM759029", "GSM759030", "GSM759031", "GSM759032", "GSM759033", "GSM759034", "GSM759035", "GSM759036", "GSM759037", "GSM759038", "GSM759039", "GSM759040", "GSM759041", "GSM759042", "GSM759020" ], "type": "genotype/variation", "id": "GDS4300_2" }, { "dataset_id": "GDS4300", "description": "T-ALL PICALM-MLLT10 fusion MLL", "sample_id": [ "GSM759015", "GSM759018", "GSM759014", "GSM759016", "GSM759017", "GSM759019", "GSM759021" ], "type": "disease state", "id": "GDS4300_3" }, { "dataset_id": "GDS4300", "description": "T-/myeloid mixed acute leukemia PICALM-MLLT10 fusion MLL", "sample_id": [ "GSM759020" ], "type": "disease state", "id": "GDS4300_4" }, { "dataset_id": "GDS4300", "description": "T-ALL early MLL", "sample_id": [ "GSM759041", "GSM759040", "GSM759039", "GSM759038", "GSM759028", "GSM759027", "GSM759026", "GSM759025", "GSM759024", "GSM759023", "GSM759022" ], "type": "disease state", "id": "GDS4300_5" }, { "dataset_id": "GDS4300", "description": "T-ALL cortical MLL", "sample_id": [ "GSM759042", "GSM759037", "GSM759036", "GSM759035", "GSM759034", "GSM759033", "GSM759032", "GSM759030" ], "type": "disease state", "id": "GDS4300_6" }, { "dataset_id": "GDS4300", "description": "T-ALL mature MLL", "sample_id": [ "GSM759031", "GSM759029" ], "type": "disease state", "id": "GDS4300_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4300", "version": 1.0, "instances": "29", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4300.tab", "compression": "gz" } ], [ [ "GDS4301.tab" ], { "title": "Acute myeloid leukemia CD34+CD38- cell population", "description": "Analysis of CD34+CD38- and CD34+CD38+ cell fractions isolated from 5 acute myeloid leukemia (AML) patients. AML CD34+CD38- cells are enriched leukemic stem cells (LSC) that maintain the propagation of the disease. Results provide insight into molecular mechanisms that maintain and characterize LSC.", "type": "Expression profiling by array", "pubmed_id": "17039238", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE34044", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4301", "description": "CD34+CD38-", "sample_id": [ "GSM840934", "GSM840932", "GSM840931", "GSM840930", "GSM840928" ], "type": "cell type", "id": "GDS4301_1" }, { "dataset_id": "GDS4301", "description": "CD34+CD38+", "sample_id": [ "GSM840935", "GSM840933", "GSM840929" ], "type": "cell type", "id": "GDS4301_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4301", "version": 1.0, "instances": "8", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4301.tab", "compression": "gz" } ], [ [ "GDS4302.tab" ], { "title": "Gfi1b overexpression in a pro-B Abelson leukemia virus transformed cell line", "description": "Analysis of Abelson murine leukemia virus (AMuLV) pro-B cell line expressing Gfi1b-estrogen receptor fusion protein. Targeted disruption of transcription factor Gfi1b severly impacts B cell development in vivo. Results provide insight into the role of Gfi1b in normal B cell development.", "type": "Expression profiling by array", "pubmed_id": "22201127", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE33709", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4302", "description": "Gfi1b-overexpression", "sample_id": [ "GSM833178", "GSM833180", "GSM833182" ], "type": "genotype/variation", "id": "GDS4302_1" }, { "dataset_id": "GDS4302", "description": "wild type", "sample_id": [ "GSM833177", "GSM833179", "GSM833181" ], "type": "genotype/variation", "id": "GDS4302_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4302", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4302.tab", "compression": "gz" } ], [ [ "GDS4303.tab" ], { "title": "Notch1 overexpression model of T-cell acute lymphoblastic leukemia: double positive CD4+/8+ cells", "description": "Analysis of DP (CD4+/8+) cells from an intracellular Notch1 (Notch1-IC)-induced T-ALL model that recapitulates most features of human T-ALL. T-ALL malignancy is driven by oncogenic activation of NOTCH1 signaling. Results provide insight into the molecular basis of Notch1-driven leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "22237151", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE34554", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4303", "description": "normal thymus", "sample_id": [ "GSM850941", "GSM850942" ], "type": "tissue", "id": "GDS4303_1" }, { "dataset_id": "GDS4303", "description": "Notch1-IC overexpressing tumor", "sample_id": [ "GSM850943", "GSM850944" ], "type": "tissue", "id": "GDS4303_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4303", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4303.tab", "compression": "gz" } ], [ [ "GDS4304.tab" ], { "title": "ATP effect on acute myeloid leukemia lymphoblasts", "description": "Analysis of lymphoblasts from 12 acute myeloid leukemia (AML) patients cultured for 24hrs with ATP. Extracellular nucleotide ATP inhibits proliferation and accumulation of AML cells. Results provide insight into the molecular mechanisms underlying the inhibitory activity of ATP on leukemic cells.", "type": "Expression profiling by array", "pubmed_id": "22053107", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE30903", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4304", "description": "AML FAB class M1", "sample_id": [ "GSM766225", "GSM766226", "GSM766227", "GSM766228", "GSM766229", "GSM766230" ], "type": "disease state", "id": "GDS4304_1" }, { "dataset_id": "GDS4304", "description": "AML FAB class M2", "sample_id": [ "GSM766231", "GSM766232", "GSM766233", "GSM766234", "GSM766245", "GSM766246" ], "type": "disease state", "id": "GDS4304_2" }, { "dataset_id": "GDS4304", "description": "AML FAB class M4", "sample_id": [ "GSM766235", "GSM766236", "GSM766237", "GSM766238", "GSM766247", "GSM766248" ], "type": "disease state", "id": "GDS4304_3" }, { "dataset_id": "GDS4304", "description": "AML FAB class M5", "sample_id": [ "GSM766239", "GSM766240", "GSM766241", "GSM766242", "GSM766243", "GSM766244" ], "type": "disease state", "id": "GDS4304_4" }, { "dataset_id": "GDS4304", "description": "untreated", "sample_id": [ "GSM766225", "GSM766227", "GSM766229", "GSM766231", "GSM766233", "GSM766235", "GSM766237", "GSM766239", "GSM766241", "GSM766243", "GSM766245", "GSM766247" ], "type": "agent", "id": "GDS4304_5" }, { "dataset_id": "GDS4304", "description": "ATP", "sample_id": [ "GSM766226", "GSM766228", "GSM766230", "GSM766232", "GSM766234", "GSM766236", "GSM766238", "GSM766240", "GSM766242", "GSM766244", "GSM766246", "GSM766248" ], "type": "agent", "id": "GDS4304_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4304", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4304.tab", "compression": "gz" } ], [ [ "GDS4305.tab" ], { "title": "Glycogen synthase kinase 3 \u03b1 knockdown in acute myeloid leukemia cell lines", "description": "Analysis of AML cell lines infected with shRNAs against glycogen synthase kinase 3 \u03b1 and \u03b2 isoforms (GSK-3\u03b1, GSK-3\u03b2). GSK-3 is a multifunctional serine threonine kinase; specific loss of GSK-3\u03b1 induces differentiation in AML. Results provide insight into the role of GSK-3\u03b1 in AML.", "type": "Expression profiling by array", "pubmed_id": "22326953", "platform": "GPL3921", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE35200", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4305", "description": "HL-60", "sample_id": [ "GSM863392", "GSM863393", "GSM863394", "GSM863399", "GSM863400", "GSM863401", "GSM863402", "GSM863395", "GSM863396", "GSM863397", "GSM863398" ], "type": "cell line", "id": "GDS4305_1" }, { "dataset_id": "GDS4305", "description": "MOLM-14", "sample_id": [ "GSM863414", "GSM863415", "GSM863416", "GSM863421", "GSM863422", "GSM863423", "GSM863424", "GSM863417", "GSM863418", "GSM863419", "GSM863420" ], "type": "cell line", "id": "GDS4305_2" }, { "dataset_id": "GDS4305", "description": "THP-1", "sample_id": [ "GSM863403", "GSM863404", "GSM863405", "GSM863410", "GSM863411", "GSM863412", "GSM863413", "GSM863406", "GSM863407", "GSM863408", "GSM863409" ], "type": "cell line", "id": "GDS4305_3" }, { "dataset_id": "GDS4305", "description": "U937", "sample_id": [ "GSM863425", "GSM863426", "GSM863427", "GSM863432", "GSM863433", "GSM863434", "GSM863435", "GSM863428", "GSM863429", "GSM863430", "GSM863431" ], "type": "cell line", "id": "GDS4305_4" }, { "dataset_id": "GDS4305", "description": "GSK-3\u03b1 knockdown", "sample_id": [ "GSM863399", "GSM863400", "GSM863401", "GSM863402", "GSM863410", "GSM863411", "GSM863412", "GSM863413", "GSM863421", "GSM863422", "GSM863423", "GSM863424", "GSM863432", "GSM863433", "GSM863434", "GSM863435" ], "type": "genotype/variation", "id": "GDS4305_5" }, { "dataset_id": "GDS4305", "description": "GSK-3\u03b2 knockdown", "sample_id": [ "GSM863395", "GSM863396", "GSM863397", "GSM863398", "GSM863406", "GSM863407", "GSM863408", "GSM863409", "GSM863417", "GSM863418", "GSM863419", "GSM863420", "GSM863428", "GSM863429", "GSM863430", "GSM863431" ], "type": "genotype/variation", "id": "GDS4305_6" }, { "dataset_id": "GDS4305", "description": "control", "sample_id": [ "GSM863392", "GSM863393", "GSM863394", "GSM863403", "GSM863404", "GSM863405", "GSM863414", "GSM863415", "GSM863416", "GSM863425", "GSM863426", "GSM863427" ], "type": "genotype/variation", "id": "GDS4305_7" }, { "dataset_id": "GDS4305", "description": "construct 1", "sample_id": [ "GSM863395", "GSM863396", "GSM863417", "GSM863418", "GSM863406", "GSM863407", "GSM863428", "GSM863429" ], "type": "other", "id": "GDS4305_8" }, { "dataset_id": "GDS4305", "description": "construct 2", "sample_id": [ "GSM863397", "GSM863398", "GSM863419", "GSM863420", "GSM863408", "GSM863409", "GSM863430", "GSM863431" ], "type": "other", "id": "GDS4305_9" }, { "dataset_id": "GDS4305", "description": "construct 5", "sample_id": [ "GSM863399", "GSM863400", "GSM863421", "GSM863422", "GSM863410", "GSM863411", "GSM863432", "GSM863433" ], "type": "other", "id": "GDS4305_10" }, { "dataset_id": "GDS4305", "description": "construct 6", "sample_id": [ "GSM863401", "GSM863402", "GSM863423", "GSM863424", "GSM863412", "GSM863413", "GSM863434", "GSM863435" ], "type": "other", "id": "GDS4305_11" }, { "dataset_id": "GDS4305", "description": "n/a", "sample_id": [ "GSM863392", "GSM863393", "GSM863394", "GSM863414", "GSM863415", "GSM863416", "GSM863403", "GSM863404", "GSM863405", "GSM863425", "GSM863426", "GSM863427" ], "type": "other", "id": "GDS4305_12" } ], "taxid": "9606", "genes": 13936, "aggregation_function": "mean", "name": "GDS4305", "version": 1.0, "instances": "44", "variables": 13940, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4305.tab", "compression": "gz" } ], [ [ "GDS4306.tab" ], { "title": "DNA methyltransferase Dnmt1 knockout effect on leukemia stem cells and bulk leukemia cells", "description": "Analysis of Dnmt1 haploinsufficient leukemia stem cells (leukemic granulocytemacrophage progenitors; L-GMPs) and bulk leukemia cells from a model of MLL-AF9-induced acute myeloid leukemia (AML). Dnmt1 haploinsufficiency delays progression of AML. Results provide insight into role of Dnmt1 in AML.", "type": "Expression profiling by array", "pubmed_id": "22345515", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE31626", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4306", "description": "Dnmt1fl/+ Mx-Cre", "sample_id": [ "GSM785619", "GSM785620", "GSM785623", "GSM785624" ], "type": "genotype/variation", "id": "GDS4306_1" }, { "dataset_id": "GDS4306", "description": "control", "sample_id": [ "GSM785617", "GSM785618", "GSM785621", "GSM785622" ], "type": "genotype/variation", "id": "GDS4306_2" }, { "dataset_id": "GDS4306", "description": "sorted L-GMPs", "sample_id": [ "GSM785617", "GSM785618", "GSM785619", "GSM785620" ], "type": "cell type", "id": "GDS4306_3" }, { "dataset_id": "GDS4306", "description": "bulk leukemia cells", "sample_id": [ "GSM785621", "GSM785622", "GSM785623", "GSM785624" ], "type": "cell type", "id": "GDS4306_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4306", "version": 1.0, "instances": "8", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4306.tab", "compression": "gz" } ], [ [ "GDS4308.tab" ], { "title": "Prolonged cardiothoracic surgery effect on diaphragm", "description": "Analysis of paired diaphragm biopsies from 5 patients during cardiothoracic surgery: the 1st as soon as diaphragm was exposed, the 2nd as late in surgery as possible (4.9 \u00b1 1.8 hrs between biopsies). Results provide insight into diaphragm muscle biology after prolonged cardiothoracic procedures.", "type": "Expression profiling by array", "pubmed_id": "21463877", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE19533", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4308", "description": "1st biopsy", "sample_id": [ "GSM487045", "GSM487043", "GSM487041", "GSM487039", "GSM487037" ], "type": "specimen", "id": "GDS4308_1" }, { "dataset_id": "GDS4308", "description": "2nd biopsy", "sample_id": [ "GSM487038", "GSM487036", "GSM487040", "GSM487042", "GSM487044" ], "type": "specimen", "id": "GDS4308_2" }, { "dataset_id": "GDS4308", "description": "54", "sample_id": [ "GSM487042", "GSM487043" ], "type": "age", "id": "GDS4308_3" }, { "dataset_id": "GDS4308", "description": "56", "sample_id": [ "GSM487036", "GSM487037" ], "type": "age", "id": "GDS4308_4" }, { "dataset_id": "GDS4308", "description": "71", "sample_id": [ "GSM487040", "GSM487041" ], "type": "age", "id": "GDS4308_5" }, { "dataset_id": "GDS4308", "description": "76", "sample_id": [ "GSM487038", "GSM487039" ], "type": "age", "id": "GDS4308_6" }, { "dataset_id": "GDS4308", "description": "78", "sample_id": [ "GSM487044", "GSM487045" ], "type": "age", "id": "GDS4308_7" }, { "dataset_id": "GDS4308", "description": "1", "sample_id": [ "GSM487036", "GSM487037" ], "type": "individual", "id": "GDS4308_8" }, { "dataset_id": "GDS4308", "description": "3", "sample_id": [ "GSM487038", "GSM487039" ], "type": "individual", "id": "GDS4308_9" }, { "dataset_id": "GDS4308", "description": "4", "sample_id": [ "GSM487040", "GSM487041" ], "type": "individual", "id": "GDS4308_10" }, { "dataset_id": "GDS4308", "description": "5", "sample_id": [ "GSM487042", "GSM487043" ], "type": "individual", "id": "GDS4308_11" }, { "dataset_id": "GDS4308", "description": "6", "sample_id": [ "GSM487044", "GSM487045" ], "type": "individual", "id": "GDS4308_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4308", "version": 1.0, "instances": "10", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4308.tab", "compression": "gz" } ], [ [ "GDS4309.tab" ], { "title": "Polycomb histone methyltransferase Ezh2-deficient hearts: right ventricle and interventricular septum", "description": "Analysis of right ventricle and interventricular septum from Ezh2-deficient adults. Loss of Ezh2 leads to cardiac hypertrophy and fibrosis. Results provide insight into the role of Ezh2 in postnatal organ homeostasis.", "type": "Expression profiling by array", "pubmed_id": "22267199", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE30076", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4309", "description": "wild type", "sample_id": [ "GSM744482", "GSM744483", "GSM744484", "GSM744485", "GSM744486" ], "type": "genotype/variation", "id": "GDS4309_1" }, { "dataset_id": "GDS4309", "description": "Ezh2-deficient", "sample_id": [ "GSM744487", "GSM744488", "GSM744489", "GSM744490" ], "type": "genotype/variation", "id": "GDS4309_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4309", "version": 1.0, "instances": "9", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4309.tab", "compression": "gz" } ], [ [ "GDS431.tab" ], { "title": "MHC class II transactivator targets (MG-U74Av2)", "description": "Identification of new targets of major histocompatibility complex class II transactivator CIITA in dendritic cells (DC). Day 10 bone marrow-derived DC isolated from B6 background CIITA-deficient, MHC class II-deficient and wild type mice examined.", "type": "Expression profiling by array", "pubmed_id": "12910265", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE557", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS431", "description": "CIITA -/-", "sample_id": [ "GSM8636", "GSM8639" ], "type": "strain", "id": "GDS431_1" }, { "dataset_id": "GDS431", "description": "I-A beta -/-", "sample_id": [ "GSM8637", "GSM8640" ], "type": "strain", "id": "GDS431_2" }, { "dataset_id": "GDS431", "description": "wild type", "sample_id": [ "GSM8635", "GSM8638" ], "type": "strain", "id": "GDS431_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS431", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS431.tab", "compression": "gz" } ], [ [ "GDS4310.tab" ], { "title": "Protein kinase C (PKC)\u03b6 knockout response to chronic angiotensin treatment in vivo: heart", "description": "Analysis of heart from PKC\u03b6-deficient males subjected to continuous infusion of angiotensin II for 14 days. PKC\u03b6 knockouts do not develop cardiac hypertrophy (CH) upon chronic challenge with angiotensin II. Results provide insight into the role of PKC\u03b6 in CH.", "type": "Expression profiling by array", "pubmed_id": "22232556", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE29145", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4310", "description": "PKC\u03b6-/- knockout", "sample_id": [ "GSM721517", "GSM721518", "GSM721519", "GSM721520", "GSM721521" ], "type": "genotype/variation", "id": "GDS4310_1" }, { "dataset_id": "GDS4310", "description": "wild type", "sample_id": [ "GSM721522", "GSM721523", "GSM721524", "GSM721525", "GSM721526" ], "type": "genotype/variation", "id": "GDS4310_2" }, { "dataset_id": "GDS4310", "description": "angiotensin II", "sample_id": [ "GSM721517", "GSM721518", "GSM721522", "GSM721523", "GSM721524" ], "type": "agent", "id": "GDS4310_3" }, { "dataset_id": "GDS4310", "description": "control", "sample_id": [ "GSM721519", "GSM721520", "GSM721521", "GSM721525", "GSM721526" ], "type": "agent", "id": "GDS4310_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4310", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4310.tab", "compression": "gz" } ], [ [ "GDS4311.tab" ], { "title": "Sex effect on acute coxsackievirus B3-induced myocarditis: heart", "description": "Analysis of heart from CVB3-infected males during acute myocarditis (day 10 postinfection). Myocarditis and DCM, often caused by viral infections, occur more frequently in men than in women. Results provided insight into molecular basis of progression from acute CVB3 myocarditis to DCM in males.", "type": "Expression profiling by array", "pubmed_id": "22328081", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE35182", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4311", "description": "male", "sample_id": [ "GSM863119", "GSM863120", "GSM863121", "GSM863113", "GSM863114", "GSM863115" ], "type": "gender", "id": "GDS4311_1" }, { "dataset_id": "GDS4311", "description": "female", "sample_id": [ "GSM863116", "GSM863117", "GSM863118", "GSM863110", "GSM863111", "GSM863112" ], "type": "gender", "id": "GDS4311_2" }, { "dataset_id": "GDS4311", "description": "CVB3", "sample_id": [ "GSM863121", "GSM863120", "GSM863119", "GSM863118", "GSM863117", "GSM863116" ], "type": "infection", "id": "GDS4311_3" }, { "dataset_id": "GDS4311", "description": "control", "sample_id": [ "GSM863115", "GSM863114", "GSM863113", "GSM863112", "GSM863111", "GSM863110" ], "type": "infection", "id": "GDS4311_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4311", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4311.tab", "compression": "gz" } ], [ [ "GDS4312.tab" ], { "title": "Inherited dilated cardiomyopathy patient-specific induced pluripotent stem cells", "description": "Analysis of iPSCs derived from skin fibroblasts of Dilated Cardiomyopathy (DCM) family members carrying point mutation R173W in the sarcomeric protein cardiac troponin T (TNNT2) gene. Results provide insight into the molecular mechanisms underlying familial dilated cardiomyopathy.", "type": "Expression profiling by array", "pubmed_id": "22517884", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE35108", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4312", "description": "iPSC", "sample_id": [ "GSM862168", "GSM862169", "GSM862165", "GSM862166", "GSM862167", "GSM862163", "GSM862164" ], "type": "cell type", "id": "GDS4312_1" }, { "dataset_id": "GDS4312", "description": "embryonic stem cell", "sample_id": [ "GSM862162" ], "type": "cell type", "id": "GDS4312_2" }, { "dataset_id": "GDS4312", "description": "fibroblast", "sample_id": [ "GSM862161" ], "type": "cell type", "id": "GDS4312_3" }, { "dataset_id": "GDS4312", "description": "DCM patient Ia", "sample_id": [ "GSM862163" ], "type": "individual", "id": "GDS4312_4" }, { "dataset_id": "GDS4312", "description": "control family member Ib", "sample_id": [ "GSM862164" ], "type": "individual", "id": "GDS4312_5" }, { "dataset_id": "GDS4312", "description": "DCM patient IIa", "sample_id": [ "GSM862165" ], "type": "individual", "id": "GDS4312_6" }, { "dataset_id": "GDS4312", "description": "DCM patient IIb", "sample_id": [ "GSM862166" ], "type": "individual", "id": "GDS4312_7" }, { "dataset_id": "GDS4312", "description": "control family member IIc", "sample_id": [ "GSM862167" ], "type": "individual", "id": "GDS4312_8" }, { "dataset_id": "GDS4312", "description": "DCM patient IIIa", "sample_id": [ "GSM862168" ], "type": "individual", "id": "GDS4312_9" }, { "dataset_id": "GDS4312", "description": "control family member IIIb", "sample_id": [ "GSM862169" ], "type": "individual", "id": "GDS4312_10" }, { "dataset_id": "GDS4312", "description": "control family member", "sample_id": [ "GSM862161" ], "type": "individual", "id": "GDS4312_11" }, { "dataset_id": "GDS4312", "description": "n/a", "sample_id": [ "GSM862162" ], "type": "individual", "id": "GDS4312_12" }, { "dataset_id": "GDS4312", "description": "DCM (R173W mutation)", "sample_id": [ "GSM862163", "GSM862165", "GSM862166", "GSM862168" ], "type": "genotype/variation", "id": "GDS4312_13" }, { "dataset_id": "GDS4312", "description": "Normal (does not carry R173W mutation)", "sample_id": [ "GSM862161", "GSM862162", "GSM862164", "GSM862167", "GSM862169" ], "type": "genotype/variation", "id": "GDS4312_14" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4312", "version": 1.0, "instances": "9", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4312.tab", "compression": "gz" } ], [ [ "GDS4313.tab" ], { "title": "Foregut endoderm and combined heart mesoderm and head tissue from E8.5 embryos", "description": "Analysis of foregut endoderm and mesoderm/ectoderm from early somite-stage embryos. Foregut definitive endoderm is the precursor of many tissues such as liver, pancreas, oesophagus. Results provide insight into molecular mechanisms underlying early development of the foregut definitive endoderm.", "type": "Expression profiling by array", "pubmed_id": "21903671", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE36453", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4313", "description": "foregut endoderm", "sample_id": [ "GSM894043", "GSM894041" ], "type": "tissue", "id": "GDS4313_1" }, { "dataset_id": "GDS4313", "description": "mesoderm/ectoderm", "sample_id": [ "GSM894042", "GSM894044" ], "type": "tissue", "id": "GDS4313_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4313", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4313.tab", "compression": "gz" } ], [ [ "GDS4314.tab" ], { "title": "Diabetic ischemic heart failure patients: non-infarcted left ventricle", "description": "Analysis of left ventricle cardiac biopsies taken from the vital, non-infarcted zone of diabetic patients with ischemic heart failure (HF). Increased morbidity and mortality are associated with ischemic HF in diabetic patients. Results provide insight into the underlying pathogenetic mechanisms.", "type": "Expression profiling by array", "pubmed_id": "22427379", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE26887", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4314", "description": "control", "sample_id": [ "GSM662158", "GSM662159", "GSM662160", "GSM662161", "GSM662162" ], "type": "disease state", "id": "GDS4314_1" }, { "dataset_id": "GDS4314", "description": "diabetic, heart failure", "sample_id": [ "GSM662163", "GSM662164", "GSM662165", "GSM662166", "GSM662167", "GSM662168", "GSM662169" ], "type": "disease state", "id": "GDS4314_2" }, { "dataset_id": "GDS4314", "description": "non-diabetic, heart failure", "sample_id": [ "GSM662170", "GSM662171", "GSM662172", "GSM662173", "GSM662174", "GSM662175", "GSM662176", "GSM662177", "GSM662178", "GSM662179", "GSM662180", "GSM662181" ], "type": "disease state", "id": "GDS4314_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4314", "version": 1.0, "instances": "24", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4314.tab", "compression": "gz" } ], [ [ "GDS4315.tab" ], { "title": "One-Twenty-Two-1 knockout effect on hematopoietic stem cells", "description": "Analysis of Lin- Sca-1+ c-Kit+ (LSK) cells, which include the hematopoietic stem cell (HSC) population, sorted from bone marrow of Ott1 knockouts. HSCs lacking Ott1 are unable to maintain quiescence during proliferative stress. Results provide insight into the role of Ott1 in stress hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "22490678", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE37047", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4315", "description": "Ott1 knockout", "sample_id": [ "GSM909294", "GSM909295", "GSM909296" ], "type": "genotype/variation", "id": "GDS4315_1" }, { "dataset_id": "GDS4315", "description": "control", "sample_id": [ "GSM909297", "GSM909298", "GSM909299" ], "type": "genotype/variation", "id": "GDS4315_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4315", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4315.tab", "compression": "gz" } ], [ [ "GDS4316.tab" ], { "title": "Heart, kidney and lung during juvenile growth", "description": "Analysis of heart, kidney, and lung from C57BL/6 males at 1, 4, 8 weeks of age. Mammalian somatic growth is rapid in early postnatal life but slows and eventually ceases in multiple tissues. Results provide insight into molecular events common to multiple tissues that regulate growth deceleration.", "type": "Expression profiling by array", "pubmed_id": "19036884", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE38754", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4316", "description": "1 week", "sample_id": [ "GSM949115", "GSM949116", "GSM949117", "GSM949118", "GSM949119", "GSM949120", "GSM949121", "GSM949122", "GSM949123", "GSM949124", "GSM949125", "GSM949126", "GSM949127", "GSM949128", "GSM949129" ], "type": "time", "id": "GDS4316_1" }, { "dataset_id": "GDS4316", "description": "4 week", "sample_id": [ "GSM949130", "GSM949131", "GSM949132", "GSM949133", "GSM949134", "GSM949135", "GSM949136", "GSM949137", "GSM949138", "GSM949139", "GSM949140", "GSM949141", "GSM949142", "GSM949143", "GSM949144" ], "type": "time", "id": "GDS4316_2" }, { "dataset_id": "GDS4316", "description": "8 week", "sample_id": [ "GSM949145", "GSM949146", "GSM949147", "GSM949148", "GSM949149", "GSM949150", "GSM949151", "GSM949152", "GSM949153", "GSM949154" ], "type": "time", "id": "GDS4316_3" }, { "dataset_id": "GDS4316", "description": "kidney", "sample_id": [ "GSM949115", "GSM949116", "GSM949117", "GSM949118", "GSM949119", "GSM949130", "GSM949131", "GSM949132", "GSM949133", "GSM949134", "GSM949145", "GSM949146", "GSM949147", "GSM949148", "GSM949149" ], "type": "tissue", "id": "GDS4316_4" }, { "dataset_id": "GDS4316", "description": "heart", "sample_id": [ "GSM949120", "GSM949121", "GSM949122", "GSM949123", "GSM949124", "GSM949135", "GSM949136", "GSM949137", "GSM949138", "GSM949139" ], "type": "tissue", "id": "GDS4316_5" }, { "dataset_id": "GDS4316", "description": "lung", "sample_id": [ "GSM949125", "GSM949126", "GSM949127", "GSM949128", "GSM949129", "GSM949140", "GSM949141", "GSM949142", "GSM949143", "GSM949144", "GSM949150", "GSM949151", "GSM949152", "GSM949153", "GSM949154" ], "type": "tissue", "id": "GDS4316_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4316", "version": 1.0, "instances": "40", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4316.tab", "compression": "gz" } ], [ [ "GDS4317.tab" ], { "title": "Iroquois homeobox Irx3 and Irx5 deletion effect on embryonic heart", "description": "Analysis of E12.5 hearts deficient in both of the Iroquois homeodomain transcription factors, Irx3 and Irx5. Results provide insight into the molecular mechanisms underlying cooperative and antagonistic roles for Irx3 and Irx5 in cardiac morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "22992950", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE38826", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4317", "description": "Irx5+/-", "sample_id": [ "GSM950328", "GSM950327", "GSM950326" ], "type": "genotype/variation", "id": "GDS4317_1" }, { "dataset_id": "GDS4317", "description": "Irx5-/-", "sample_id": [ "GSM950335", "GSM950334", "GSM950333" ], "type": "genotype/variation", "id": "GDS4317_2" }, { "dataset_id": "GDS4317", "description": "Irx3-/-;Irx5+/-", "sample_id": [ "GSM950332", "GSM950331", "GSM950330", "GSM950329" ], "type": "genotype/variation", "id": "GDS4317_3" }, { "dataset_id": "GDS4317", "description": "Irx3-/-;Irx5-/-", "sample_id": [ "GSM950339", "GSM950338", "GSM950337", "GSM950336" ], "type": "genotype/variation", "id": "GDS4317_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4317", "version": 1.0, "instances": "14", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4317.tab", "compression": "gz" } ], [ [ "GDS4318.tab" ], { "title": "Single nucleotide polymorphism rs1333049 from the 9p21.3 coronary artery disease risk locus: normal heart", "description": "Analysis of left ventricular heart from donors with no previous history of heart disease. Results provide insight into associations between 9p21.3 (rs1333049) genotype and transcripts in cardiovascular tissue.", "type": "Expression profiling by array", "pubmed_id": "22768093", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "108", "value_type": "transformed count", "reference_series": "GSE22253", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4318", "description": "rs1333049 genotype: CC", "sample_id": [ "GSM955002", "GSM955008", "GSM955016", "GSM955019", "GSM955022", "GSM955023", "GSM955027", "GSM955043", "GSM955048", "GSM955049", "GSM955054", "GSM955064", "GSM955072", "GSM955075", "GSM955079", "GSM955087", "GSM955088", "GSM955089", "GSM955095", "GSM955097", "GSM955101" ], "type": "genotype/variation", "id": "GDS4318_1" }, { "dataset_id": "GDS4318", "description": "rs1333049 genotype: GC", "sample_id": [ "GSM954999", "GSM955001", "GSM955003", "GSM955004", "GSM955005", "GSM955009", "GSM955011", "GSM955012", "GSM955013", "GSM955015", "GSM955017", "GSM955021", "GSM955025", "GSM955028", "GSM955029", "GSM955030", "GSM955032", "GSM955033", "GSM955034", "GSM955035", "GSM955036", "GSM955037", "GSM955039", "GSM955041", "GSM955042", "GSM955045", "GSM955046", "GSM955047", "GSM955050", "GSM955052", "GSM955053", "GSM955056", "GSM955058", "GSM955059", "GSM955060", "GSM955061", "GSM955065", "GSM955066", "GSM955067", "GSM955073", "GSM955074", "GSM955076", "GSM955078", "GSM955083", "GSM955084", "GSM955086", "GSM955091", "GSM955092", "GSM955093", "GSM955098", "GSM955099", "GSM955100", "GSM955103", "GSM955104", "GSM955106" ], "type": "genotype/variation", "id": "GDS4318_2" }, { "dataset_id": "GDS4318", "description": "rs1333049 genotype: GG", "sample_id": [ "GSM955000", "GSM955006", "GSM955007", "GSM955010", "GSM955014", "GSM955018", "GSM955020", "GSM955024", "GSM955026", "GSM955031", "GSM955038", "GSM955040", "GSM955044", "GSM955051", "GSM955055", "GSM955057", "GSM955062", "GSM955063", "GSM955068", "GSM955069", "GSM955070", "GSM955071", "GSM955077", "GSM955080", "GSM955081", "GSM955082", "GSM955085", "GSM955090", "GSM955094", "GSM955096", "GSM955102", "GSM955105" ], "type": "genotype/variation", "id": "GDS4318_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4318", "version": 1.0, "instances": "108", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4318.tab", "compression": "gz" } ], [ [ "GDS4319.tab" ], { "title": "Conventionalization of germ-free C57BL/6 males: time course", "description": "Temporal analysis of colon, ileum, and jejunum from conventionalized males (i.e., germfree mice colonized with total fecal microbiota of their conventionally born and raised siblings). Results provide insight into molecular basis of innate and adaptive immune responses during conventionalization.", "type": "Expression profiling by array", "pubmed_id": [ "22617837", "22722618", "23178667" ], "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "144", "value_type": "transformed count", "reference_series": "GSE32513", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS4319", "description": "conventionalized", "sample_id": [ "GSM805100", "GSM805101", "GSM805102", "GSM805103", "GSM805104", "GSM805105", "GSM805106", "GSM805107", "GSM805108", "GSM805109", "GSM805110", "GSM805111", "GSM805112", "GSM805113", "GSM805114", "GSM805115", "GSM805116", "GSM805117", "GSM805123", "GSM805124", "GSM805125", "GSM805126", "GSM805127", "GSM805128", "GSM805129", "GSM805130", "GSM805131", "GSM805132", "GSM805133", "GSM805134", "GSM805135", "GSM805136", "GSM805137", "GSM805138", "GSM805139", "GSM805140", "GSM805141", "GSM805142", "GSM805143", "GSM805144", "GSM805145", "GSM805146", "GSM805147", "GSM805148", "GSM805149", "GSM805150", "GSM805157", "GSM805158", "GSM805159", "GSM805160", "GSM805161", "GSM805162", "GSM805163", "GSM805164", "GSM805165", "GSM805166", "GSM805167", "GSM805168", "GSM805169", "GSM805170", "GSM805171", "GSM805172", "GSM805173", "GSM805174", "GSM805175", "GSM805176", "GSM805177", "GSM805178", "GSM805179", "GSM805180", "GSM805181", "GSM805182", "GSM805183", "GSM805189", "GSM805190", "GSM805191", "GSM805192", "GSM805193", "GSM805194", "GSM805195", "GSM805196", "GSM805197", "GSM805198", "GSM805199", "GSM805200", "GSM805201", "GSM805206", "GSM805207", "GSM805208", "GSM805209", "GSM805210", "GSM805211", "GSM805212", "GSM805213", "GSM805214", "GSM805215", "GSM805216", "GSM805217", "GSM805218", "GSM805219", "GSM805220", "GSM805221", "GSM805222", "GSM805223", "GSM805224", "GSM805225", "GSM805226", "GSM805227", "GSM805228", "GSM805230", "GSM805231", "GSM805233" ], "type": "protocol", "id": "GDS4319_1" }, { "dataset_id": "GDS4319", "description": "germ free", "sample_id": [ "GSM805090", "GSM805091", "GSM805092", "GSM805093", "GSM805094", "GSM805095", "GSM805096", "GSM805097", "GSM805098", "GSM805099", "GSM805118", "GSM805119", "GSM805120", "GSM805121", "GSM805122", "GSM805151", "GSM805152", "GSM805153", "GSM805154", "GSM805155", "GSM805156", "GSM805184", "GSM805185", "GSM805186", "GSM805187", "GSM805188", "GSM805202", "GSM805203", "GSM805204", "GSM805205", "GSM805229", "GSM805232" ], "type": "protocol", "id": "GDS4319_2" }, { "dataset_id": "GDS4319", "description": "colon", "sample_id": [ "GSM805214", "GSM805215", "GSM805216", "GSM805217", "GSM805228", "GSM805231", "GSM805198", "GSM805199", "GSM805200", "GSM805201", "GSM805210", "GSM805211", "GSM805212", "GSM805213", "GSM805218", "GSM805219", "GSM805220", "GSM805221", "GSM805194", "GSM805195", "GSM805196", "GSM805197", "GSM805189", "GSM805224", "GSM805230", "GSM805190", "GSM805191", "GSM805192", "GSM805193", "GSM805206", "GSM805207", "GSM805208", "GSM805209", "GSM805222", "GSM805223", "GSM805225", "GSM805226", "GSM805227", "GSM805233", "GSM805184", "GSM805229", "GSM805232", "GSM805185", "GSM805186", "GSM805187", "GSM805188", "GSM805202", "GSM805203", "GSM805204", "GSM805205" ], "type": "tissue", "id": "GDS4319_3" }, { "dataset_id": "GDS4319", "description": "ileum", "sample_id": [ "GSM805178", "GSM805179", "GSM805180", "GSM805181", "GSM805182", "GSM805183", "GSM805157", "GSM805158", "GSM805159", "GSM805160", "GSM805161", "GSM805162", "GSM805163", "GSM805164", "GSM805165", "GSM805114", "GSM805115", "GSM805116", "GSM805117", "GSM805105", "GSM805170", "GSM805171", "GSM805106", "GSM805107", "GSM805108", "GSM805109", "GSM805166", "GSM805167", "GSM805168", "GSM805169", "GSM805172", "GSM805173", "GSM805174", "GSM805175", "GSM805176", "GSM805177", "GSM805095", "GSM805155", "GSM805156", "GSM805096", "GSM805097", "GSM805098", "GSM805099", "GSM805151", "GSM805152", "GSM805153", "GSM805154" ], "type": "tissue", "id": "GDS4319_4" }, { "dataset_id": "GDS4319", "description": "jejunum", "sample_id": [ "GSM805146", "GSM805147", "GSM805148", "GSM805149", "GSM805150", "GSM805123", "GSM805124", "GSM805125", "GSM805126", "GSM805127", "GSM805128", "GSM805129", "GSM805130", "GSM805131", "GSM805132", "GSM805133", "GSM805110", "GSM805111", "GSM805112", "GSM805113", "GSM805100", "GSM805138", "GSM805139", "GSM805101", "GSM805102", "GSM805103", "GSM805104", "GSM805134", "GSM805135", "GSM805136", "GSM805137", "GSM805140", "GSM805141", "GSM805142", "GSM805143", "GSM805144", "GSM805145", "GSM805090", "GSM805122", "GSM805091", "GSM805092", "GSM805093", "GSM805094", "GSM805118", "GSM805119", "GSM805120", "GSM805121" ], "type": "tissue", "id": "GDS4319_5" }, { "dataset_id": "GDS4319", "description": "day 0", "sample_id": [ "GSM805121", "GSM805120", "GSM805119", "GSM805118", "GSM805094", "GSM805093", "GSM805092", "GSM805091", "GSM805122", "GSM805090", "GSM805154", "GSM805153", "GSM805152", "GSM805151", "GSM805099", "GSM805098", "GSM805097", "GSM805096", "GSM805156", "GSM805155", "GSM805095", "GSM805205", "GSM805204", "GSM805203", "GSM805202", "GSM805188", "GSM805187", "GSM805186", "GSM805185", "GSM805232", "GSM805229", "GSM805184" ], "type": "time", "id": "GDS4319_6" }, { "dataset_id": "GDS4319", "description": "day 1", "sample_id": [ "GSM805128", "GSM805127", "GSM805126", "GSM805125", "GSM805124", "GSM805123", "GSM805161", "GSM805160", "GSM805159", "GSM805158", "GSM805157", "GSM805211", "GSM805210", "GSM805201", "GSM805200", "GSM805199", "GSM805198" ], "type": "time", "id": "GDS4319_7" }, { "dataset_id": "GDS4319", "description": "day 2", "sample_id": [ "GSM805133", "GSM805132", "GSM805131", "GSM805130", "GSM805129", "GSM805165", "GSM805164", "GSM805163", "GSM805162", "GSM805221", "GSM805220", "GSM805219", "GSM805218", "GSM805213", "GSM805212" ], "type": "time", "id": "GDS4319_8" }, { "dataset_id": "GDS4319", "description": "day 4", "sample_id": [ "GSM805137", "GSM805136", "GSM805135", "GSM805134", "GSM805104", "GSM805103", "GSM805102", "GSM805101", "GSM805139", "GSM805138", "GSM805100", "GSM805169", "GSM805168", "GSM805167", "GSM805166", "GSM805109", "GSM805108", "GSM805107", "GSM805106", "GSM805171", "GSM805170", "GSM805105", "GSM805209", "GSM805208", "GSM805207", "GSM805206", "GSM805193", "GSM805192", "GSM805191", "GSM805190", "GSM805230", "GSM805224", "GSM805189" ], "type": "time", "id": "GDS4319_9" }, { "dataset_id": "GDS4319", "description": "day 8", "sample_id": [ "GSM805145", "GSM805144", "GSM805143", "GSM805142", "GSM805141", "GSM805140", "GSM805177", "GSM805176", "GSM805175", "GSM805174", "GSM805173", "GSM805172", "GSM805233", "GSM805227", "GSM805226", "GSM805225", "GSM805223", "GSM805222" ], "type": "time", "id": "GDS4319_10" }, { "dataset_id": "GDS4319", "description": "day 16", "sample_id": [ "GSM805150", "GSM805149", "GSM805148", "GSM805147", "GSM805146", "GSM805183", "GSM805182", "GSM805181", "GSM805180", "GSM805179", "GSM805178", "GSM805231", "GSM805228", "GSM805217", "GSM805216", "GSM805215", "GSM805214" ], "type": "time", "id": "GDS4319_11" }, { "dataset_id": "GDS4319", "description": "day 30", "sample_id": [ "GSM805113", "GSM805112", "GSM805111", "GSM805110", "GSM805117", "GSM805116", "GSM805115", "GSM805114", "GSM805197", "GSM805196", "GSM805195", "GSM805194" ], "type": "time", "id": "GDS4319_12" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4319", "version": 1.0, "instances": "144", "variables": 25183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4319.tab", "compression": "gz" } ], [ [ "GDS432.tab" ], { "title": "MHC class II transactivator targets (MG-U74Av1)", "description": "Identification of new targets of major histocompatibility complex class II transactivator CIITA in dendritic cells (DC). Day 10 bone marrow-derived DCs isolated from B6 background CIITA-deficient, MHC class II-deficient and wild type mice examined.", "type": "Expression profiling by array", "pubmed_id": "12910265", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE557", "order": "none", "update_date": "Nov 14 2003", "subsets": [ { "dataset_id": "GDS432", "description": "CIITA -/-", "sample_id": [ "GSM8642" ], "type": "strain", "id": "GDS432_1" }, { "dataset_id": "GDS432", "description": "I-A beta -/-", "sample_id": [ "GSM8643" ], "type": "strain", "id": "GDS432_2" }, { "dataset_id": "GDS432", "description": "wild type", "sample_id": [ "GSM8641" ], "type": "strain", "id": "GDS432_3" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS432", "version": 1.0, "instances": "3", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS432.tab", "compression": "gz" } ], [ [ "GDS4320.tab" ], { "title": "Pancreatic-specific PPAR-beta deletion effect on pancreatic beta-cells", "description": "Analysis of \u03b2-cells harboring a pancreatic-specific deletion of peroxisome proliferator-activated receptor (PPAR)-\u03b2. The pancreas-specific KO animals developed chronic hyperinsulinemia due to increased beta-cell mass and insulin secretion. Results provide insight into role of PPAR-\u03b2 in pancreas.", "type": "Expression profiling by array", "pubmed_id": "23093780", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE16048", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4320", "description": "control", "sample_id": [ "GSM401525", "GSM401526", "GSM401527" ], "type": "genotype/variation", "id": "GDS4320_1" }, { "dataset_id": "GDS4320", "description": "PPAR-beta deletion", "sample_id": [ "GSM401528", "GSM401529", "GSM401530" ], "type": "genotype/variation", "id": "GDS4320_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4320", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4320.tab", "compression": "gz" } ], [ [ "GDS4322.tab" ], { "title": "Small molecule KY02111 effect on induced pluripotent stem cell line IMR90-1: time course", "description": "Analysis of IMR90-1 iPSCs cultured in cardiac differentiation medium containing serum for 3 days, then treated with KY02111 for up to 24 hrs. KY02111 promotes differentiation of PSCs to cardiomyocytes. Results provide insight into molecular basis of KY02111-induced cardiac differentiation of PSCs.", "type": "Expression profiling by array", "pubmed_id": "23103164", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE33622", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4322", "description": "KY02111", "sample_id": [ "GSM831372", "GSM831375", "GSM831376" ], "type": "agent", "id": "GDS4322_1" }, { "dataset_id": "GDS4322", "description": "control", "sample_id": [ "GSM831373", "GSM831374" ], "type": "agent", "id": "GDS4322_2" }, { "dataset_id": "GDS4322", "description": "0 hour", "sample_id": [ "GSM831372" ], "type": "time", "id": "GDS4322_3" }, { "dataset_id": "GDS4322", "description": "12 hours", "sample_id": [ "GSM831373", "GSM831375" ], "type": "time", "id": "GDS4322_4" }, { "dataset_id": "GDS4322", "description": "24 hours", "sample_id": [ "GSM831374", "GSM831376" ], "type": "time", "id": "GDS4322_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4322", "version": 1.0, "instances": "5", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4322.tab", "compression": "gz" } ], [ [ "GDS4323.tab" ], { "title": "Low-dose ionizing radiation effect on breast tissue: two inbred strains", "description": "Analysis of mammary gland from BALB/c and C57BL/6 females exposed to low dose (LD) ionizing radiation. The two inbred strains differ in their genetic susceptibility to radiation-induced mammary cancer. Results provide insight into molecular mechanisms underlying mammary cancer susceptibility.", "type": "Expression profiling by array", "pubmed_id": "23077491", "platform": "GPL8759", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22716", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "transformed count", "reference_series": "GSE40066", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4323", "description": "C57BL/6", "sample_id": [ "GSM984553", "GSM984554", "GSM984555", "GSM984556", "GSM984557", "GSM984558", "GSM984559", "GSM984560", "GSM984561", "GSM984562", "GSM984563", "GSM984564", "GSM984565", "GSM984566", "GSM984567", "GSM984568", "GSM984569", "GSM984570", "GSM984571", "GSM984572", "GSM984573", "GSM984574", "GSM984575", "GSM984600", "GSM984601", "GSM984602", "GSM984603" ], "type": "strain", "id": "GDS4323_1" }, { "dataset_id": "GDS4323", "description": "BALB/c", "sample_id": [ "GSM984576", "GSM984577", "GSM984578", "GSM984579", "GSM984580", "GSM984581", "GSM984582", "GSM984583", "GSM984584", "GSM984585", "GSM984586", "GSM984587", "GSM984588", "GSM984589", "GSM984590", "GSM984591", "GSM984592", "GSM984593", "GSM984594", "GSM984595", "GSM984596", "GSM984597", "GSM984598", "GSM984599" ], "type": "strain", "id": "GDS4323_2" }, { "dataset_id": "GDS4323", "description": "mammary gland", "sample_id": [ "GSM984553", "GSM984554", "GSM984555", "GSM984556", "GSM984557", "GSM984558", "GSM984559", "GSM984560", "GSM984561", "GSM984562", "GSM984563", "GSM984564", "GSM984565", "GSM984566", "GSM984567", "GSM984568", "GSM984569", "GSM984570", "GSM984571", "GSM984572", "GSM984573", "GSM984574", "GSM984575", "GSM984576", "GSM984577", "GSM984578", "GSM984579", "GSM984580", "GSM984581", "GSM984582", "GSM984583", "GSM984584", "GSM984585", "GSM984586", "GSM984587", "GSM984588", "GSM984589", "GSM984590", "GSM984591", "GSM984592", "GSM984593", "GSM984594", "GSM984595" ], "type": "tissue", "id": "GDS4323_3" }, { "dataset_id": "GDS4323", "description": "cardiac blood", "sample_id": [ "GSM984596", "GSM984597", "GSM984598", "GSM984599", "GSM984600", "GSM984601", "GSM984602", "GSM984603" ], "type": "tissue", "id": "GDS4323_4" }, { "dataset_id": "GDS4323", "description": "non-irradiated", "sample_id": [ "GSM984596", "GSM984597", "GSM984598", "GSM984599", "GSM984600", "GSM984601", "GSM984602", "GSM984603" ], "type": "dose", "id": "GDS4323_5" }, { "dataset_id": "GDS4323", "description": "sham exposure", "sample_id": [ "GSM984569", "GSM984570", "GSM984571", "GSM984572", "GSM984573", "GSM984574", "GSM984575", "GSM984590", "GSM984591", "GSM984592", "GSM984593", "GSM984594", "GSM984595" ], "type": "dose", "id": "GDS4323_6" }, { "dataset_id": "GDS4323", "description": "low doses (7.5 cGy)", "sample_id": [ "GSM984561", "GSM984562", "GSM984563", "GSM984564", "GSM984565", "GSM984566", "GSM984567", "GSM984568", "GSM984584", "GSM984585", "GSM984586", "GSM984587", "GSM984588", "GSM984589" ], "type": "dose", "id": "GDS4323_7" }, { "dataset_id": "GDS4323", "description": "high doses (1.8 Gy)", "sample_id": [ "GSM984553", "GSM984554", "GSM984555", "GSM984556", "GSM984557", "GSM984558", "GSM984559", "GSM984560", "GSM984576", "GSM984577", "GSM984578", "GSM984579", "GSM984580", "GSM984581", "GSM984582", "GSM984583" ], "type": "dose", "id": "GDS4323_8" }, { "dataset_id": "GDS4323", "description": "n/a", "sample_id": [ "GSM984596", "GSM984597", "GSM984598", "GSM984599", "GSM984600", "GSM984601", "GSM984602", "GSM984603" ], "type": "time", "id": "GDS4323_9" }, { "dataset_id": "GDS4323", "description": "4 hrs", "sample_id": [ "GSM984553", "GSM984554", "GSM984555", "GSM984556", "GSM984561", "GSM984562", "GSM984563", "GSM984564", "GSM984569", "GSM984570", "GSM984571", "GSM984576", "GSM984577", "GSM984578", "GSM984579", "GSM984584", "GSM984585", "GSM984586", "GSM984587", "GSM984590", "GSM984591", "GSM984592" ], "type": "time", "id": "GDS4323_10" }, { "dataset_id": "GDS4323", "description": "1 month", "sample_id": [ "GSM984557", "GSM984558", "GSM984559", "GSM984560", "GSM984565", "GSM984566", "GSM984567", "GSM984568", "GSM984572", "GSM984573", "GSM984574", "GSM984575", "GSM984580", "GSM984581", "GSM984582", "GSM984583", "GSM984588", "GSM984589", "GSM984593", "GSM984594", "GSM984595" ], "type": "time", "id": "GDS4323_11" } ], "taxid": "10090", "genes": 15695, "aggregation_function": "mean", "name": "GDS4323", "version": 1.0, "instances": "51", "variables": 15700, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4323.tab", "compression": "gz" } ], [ [ "GDS4324.tab" ], { "title": "Dopamine \u03b2-hydroxylase knockout effect on embryonic heart", "description": "Analysis of adrenergic-deficient (Dbh-/-) E10.5 hearts. Adrenergic hormones are essential for early heart development. Results provide insight into molecular mechanisms that mediate adrenergic actions in early heart development.", "type": "Expression profiling by array", "pubmed_id": "22911456", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE33906", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4324", "description": "Dbh-/-", "sample_id": [ "GSM838630", "GSM838631", "GSM838632", "GSM838633" ], "type": "genotype/variation", "id": "GDS4324_1" }, { "dataset_id": "GDS4324", "description": "control", "sample_id": [ "GSM838626", "GSM838627", "GSM838628", "GSM838629" ], "type": "genotype/variation", "id": "GDS4324_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4324", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4324.tab", "compression": "gz" } ], [ [ "GDS4325.tab" ], { "title": "Vesicular acetylcholine transporter knockdown effect on heart", "description": "Analysis of heart from vesicular acetylcholine transporter (VAChT)-deficient C57BL/6 males. The VAChT KD animals have a systemic decrease in ACh release and cardiac dysfunction. Results provide insight into potential molecular changes in the heart induced by decreased cholinergic neurotransmission.", "type": "Expression profiling by array", "pubmed_id": "22768193", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE37458", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4325", "description": "wild type", "sample_id": [ "GSM920291", "GSM920292", "GSM920293" ], "type": "genotype/variation", "id": "GDS4325_1" }, { "dataset_id": "GDS4325", "description": "VAChT knockdown", "sample_id": [ "GSM920294", "GSM920295", "GSM920296" ], "type": "genotype/variation", "id": "GDS4325_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4325", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4325.tab", "compression": "gz" } ], [ [ "GDS4326.tab" ], { "title": "Head muscle progenitors and trunk muscle progenitors: developmental time course", "description": "Analysis of pharyngeal mesoderm (PM) myogenic progenitors and trunk myogenic progenitors from E9.5 - E11.5 embryos. During embryogenesis, certain heart and craniofacial muscles arise from PM progenitors. Results provide insight into role of PM regulatory network in myogenesis and cardiogenesis.", "type": "Expression profiling by array", "pubmed_id": "23112163", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE42389", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4326", "description": "head muscle progenitors", "sample_id": [ "GSM1038684", "GSM1038685", "GSM1038686", "GSM1038687", "GSM1038688", "GSM1038689" ], "type": "cell type", "id": "GDS4326_1" }, { "dataset_id": "GDS4326", "description": "trunk muscle progenitors", "sample_id": [ "GSM1038690", "GSM1038691", "GSM1038692", "GSM1038693", "GSM1038694", "GSM1038695" ], "type": "cell type", "id": "GDS4326_2" }, { "dataset_id": "GDS4326", "description": "E9.5", "sample_id": [ "GSM1038685", "GSM1038690", "GSM1038691", "GSM1038684" ], "type": "development stage", "id": "GDS4326_3" }, { "dataset_id": "GDS4326", "description": "E10.5", "sample_id": [ "GSM1038686", "GSM1038687", "GSM1038692", "GSM1038693" ], "type": "development stage", "id": "GDS4326_4" }, { "dataset_id": "GDS4326", "description": "E11.5", "sample_id": [ "GSM1038688", "GSM1038689", "GSM1038694", "GSM1038695" ], "type": "development stage", "id": "GDS4326_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4326", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4326.tab", "compression": "gz" } ], [ [ "GDS4328.tab" ], { "title": "Cardiac transcription factors Tbx5, Gata4 and Myocardin effect on 10T1/2-tTA fibroblast cell line", "description": "Analysis of 10T1/2-tTA fibroblasts infected with different combinations of cardiac transcription factors (TFs) Tbx5, Gata4, and Myocardin lentiviruses and induced with doxycycline for 14 days. Results provide insight into the specific roles of these TFs in activating cardiac gene programs.", "type": "Expression profiling by array", "pubmed_id": "23144723", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE27329", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4328", "description": "LacZ", "sample_id": [ "GSM675173", "GSM675199", "GSM675201" ], "type": "infection", "id": "GDS4328_1" }, { "dataset_id": "GDS4328", "description": "Tbx5", "sample_id": [ "GSM675555", "GSM675556", "GSM675557" ], "type": "infection", "id": "GDS4328_2" }, { "dataset_id": "GDS4328", "description": "Gata4", "sample_id": [ "GSM675618", "GSM675620", "GSM675621" ], "type": "infection", "id": "GDS4328_3" }, { "dataset_id": "GDS4328", "description": "Myocardin", "sample_id": [ "GSM675622", "GSM675623", "GSM675624" ], "type": "infection", "id": "GDS4328_4" }, { "dataset_id": "GDS4328", "description": "Tbx5 + Gata4", "sample_id": [ "GSM675626", "GSM675627", "GSM675629" ], "type": "infection", "id": "GDS4328_5" }, { "dataset_id": "GDS4328", "description": "Gata4 + Myocardin", "sample_id": [ "GSM675649", "GSM675651", "GSM675653" ], "type": "infection", "id": "GDS4328_6" }, { "dataset_id": "GDS4328", "description": "Tbx5 + Myocardin", "sample_id": [ "GSM675654", "GSM675655", "GSM675656" ], "type": "infection", "id": "GDS4328_7" }, { "dataset_id": "GDS4328", "description": "Tbx5 + Gata4 + Myocardin", "sample_id": [ "GSM675657", "GSM675658", "GSM675660" ], "type": "infection", "id": "GDS4328_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4328", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4328.tab", "compression": "gz" } ], [ [ "GDS4329.tab" ], { "title": "Pancreatic ductal adenocarcinoma surgery patients: circulating tumor cells", "description": "Analysis of circulating tumor cells (CTC) from patients who underwent surgery for PDAC. Most cancer deaths are caused by metastases, resulting from CTCs that detach from the primary cancer and survive in distant organs. Results provide insight into molecular characterization of CTC motility in PDAC.", "type": "Expression profiling by array", "pubmed_id": "23157946", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE18670", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4329", "description": "patient 117", "sample_id": [ "GSM463723", "GSM463724", "GSM463725", "GSM463726" ], "type": "individual", "id": "GDS4329_1" }, { "dataset_id": "GDS4329", "description": "patient 104", "sample_id": [ "GSM463727", "GSM463728", "GSM463729", "GSM463730" ], "type": "individual", "id": "GDS4329_2" }, { "dataset_id": "GDS4329", "description": "patient 105", "sample_id": [ "GSM463731", "GSM463732", "GSM463733", "GSM463734" ], "type": "individual", "id": "GDS4329_3" }, { "dataset_id": "GDS4329", "description": "patient 91", "sample_id": [ "GSM463735", "GSM463736", "GSM463737", "GSM463738" ], "type": "individual", "id": "GDS4329_4" }, { "dataset_id": "GDS4329", "description": "patient 138", "sample_id": [ "GSM463739", "GSM463740", "GSM463741", "GSM463742" ], "type": "individual", "id": "GDS4329_5" }, { "dataset_id": "GDS4329", "description": "patient 123", "sample_id": [ "GSM463743", "GSM463744", "GSM463745", "GSM463746" ], "type": "individual", "id": "GDS4329_6" }, { "dataset_id": "GDS4329", "description": "original tumor", "sample_id": [ "GSM463727", "GSM463731", "GSM463723", "GSM463743", "GSM463739", "GSM463735" ], "type": "cell type", "id": "GDS4329_7" }, { "dataset_id": "GDS4329", "description": "circulating tumor cells", "sample_id": [ "GSM463730", "GSM463734", "GSM463726", "GSM463746", "GSM463742", "GSM463738" ], "type": "cell type", "id": "GDS4329_8" }, { "dataset_id": "GDS4329", "description": "hematological cells", "sample_id": [ "GSM463729", "GSM463733", "GSM463725", "GSM463745", "GSM463741", "GSM463737" ], "type": "cell type", "id": "GDS4329_9" }, { "dataset_id": "GDS4329", "description": "non-tumor pancreatic control", "sample_id": [ "GSM463728", "GSM463732", "GSM463724", "GSM463744", "GSM463740", "GSM463736" ], "type": "cell type", "id": "GDS4329_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4329", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4329.tab", "compression": "gz" } ], [ [ "GDS433.tab" ], { "title": "CD8+ effector and central memory T cells (MG-U74A)", "description": "Identification of mechanisms by which activated mast cells induce chemotaxis of antigen-experienced CD8+ effector (TEFF) but not central (TCM) memory T cells. Leukotriene B4 (LTB4) implicated in recruitment of TEFF cells to sites of allergic inflammation.", "type": "Expression profiling by array", "pubmed_id": "12949532", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE561", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS433", "description": "CD8+ effector memory T cell", "sample_id": [ "GSM8632" ], "type": "cell type", "id": "GDS433_1" }, { "dataset_id": "GDS433", "description": "CD8+ central memory T cell", "sample_id": [ "GSM8629" ], "type": "cell type", "id": "GDS433_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS433", "version": 1.0, "instances": "2", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS433.tab", "compression": "gz" } ], [ [ "GDS4330.tab" ], { "title": "Long-term octreotide treatment of neuroendocrine tumor cell line CNDT2.5", "description": "Analysis of ileum neuroendocrine tumor (NET) cell line CNDT2.5 treated with octreotide for up to 16 months. Somatostain analog octreotide is used to treat NET patients. Results provided insight into molecular basis of successful octreotide therapy or the development of drug resistance in NETs.", "type": "Expression profiling by array", "pubmed_id": "23119007", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE24358", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4330", "description": "CNDT2.5", "sample_id": [ "GSM600366", "GSM600367", "GSM600368", "GSM600369" ], "type": "cell line", "id": "GDS4330_1" }, { "dataset_id": "GDS4330", "description": "KRJ-1", "sample_id": [ "GSM600370" ], "type": "cell line", "id": "GDS4330_2" }, { "dataset_id": "GDS4330", "description": "NCIH_720", "sample_id": [ "GSM600371" ], "type": "cell line", "id": "GDS4330_3" }, { "dataset_id": "GDS4330", "description": "NCIH_727", "sample_id": [ "GSM600372" ], "type": "cell line", "id": "GDS4330_4" }, { "dataset_id": "GDS4330", "description": "QGP", "sample_id": [ "GSM600373" ], "type": "cell line", "id": "GDS4330_5" }, { "dataset_id": "GDS4330", "description": "octreotide", "sample_id": [ "GSM600366", "GSM600367" ], "type": "agent", "id": "GDS4330_6" }, { "dataset_id": "GDS4330", "description": "untreated", "sample_id": [ "GSM600370", "GSM600371", "GSM600372", "GSM600373", "GSM600368", "GSM600369" ], "type": "agent", "id": "GDS4330_7" }, { "dataset_id": "GDS4330", "description": "n/a", "sample_id": [ "GSM600370", "GSM600371", "GSM600372", "GSM600373" ], "type": "time", "id": "GDS4330_8" }, { "dataset_id": "GDS4330", "description": "10 months", "sample_id": [ "GSM600368", "GSM600366" ], "type": "time", "id": "GDS4330_9" }, { "dataset_id": "GDS4330", "description": "16 months", "sample_id": [ "GSM600367", "GSM600369" ], "type": "time", "id": "GDS4330_10" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4330", "version": 1.0, "instances": "8", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4330.tab", "compression": "gz" } ], [ [ "GDS4331.tab" ], { "title": "Raf kinase inhibitor 1 knockout effect on C57BL/6 pancreas", "description": "Analysis of pancreas from Raf kinase inhibitor 1 (Rkip1) knockouts. Rkip1-/- mice exhibit a larger pancreas and increased beta cell mass and pancreatic insulin content. Results provide insight into the role of Rkip1 in regulation of pancreatic beta cell function and proliferation.", "type": "Expression profiling by array", "pubmed_id": "22926403", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE31150", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4331", "description": "Rkip-1 knockout", "sample_id": [ "GSM771022", "GSM771023", "GSM771024" ], "type": "genotype/variation", "id": "GDS4331_1" }, { "dataset_id": "GDS4331", "description": "wild type", "sample_id": [ "GSM771025", "GSM771026", "GSM771027" ], "type": "genotype/variation", "id": "GDS4331_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4331", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4331.tab", "compression": "gz" } ], [ [ "GDS4332.tab" ], { "title": "Interleukin 1\u03b2 effect on insulinoma cell line overexpressing pancreatic duodenum homeobox 1: time course", "description": "Analysis of pancreatic duodenum homeobox 1 (Pdx1)-overexpressing, INS-1ab insulinoma cell line exposed to Interleukin 1b (IL-1\u03b2) cytokine for up to 24 hrs. Results provide insight into the molecular mechanisms underlying Pdx1-driven potentiation of beta cell sensitivity to IL-1\u03b2.", "type": "Expression profiling by array", "pubmed_id": "23000401", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "count", "reference_series": "GSE40642", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4332", "description": "Pdx1 overexpression", "sample_id": [ "GSM998776", "GSM998768", "GSM998755", "GSM998741", "GSM998775", "GSM998767", "GSM998754", "GSM998729", "GSM998774", "GSM998766", "GSM998753", "GSM998740", "GSM998769", "GSM998756", "GSM998748", "GSM998731", "GSM998777", "GSM998747", "GSM998742", "GSM998730", "GSM998778", "GSM998757", "GSM998749", "GSM998732", "GSM998779", "GSM998770", "GSM998758", "GSM998733" ], "type": "genotype/variation", "id": "GDS4332_1" }, { "dataset_id": "GDS4332", "description": "control", "sample_id": [ "GSM998783", "GSM998773", "GSM998764", "GSM998738", "GSM998784", "GSM998765", "GSM998746", "GSM998739", "GSM998771", "GSM998761", "GSM998751", "GSM998744", "GSM998782", "GSM998760", "GSM998750", "GSM998735", "GSM998780", "GSM998759", "GSM998743", "GSM998734", "GSM998772", "GSM998763", "GSM998752", "GSM998737", "GSM998781", "GSM998762", "GSM998745", "GSM998736" ], "type": "genotype/variation", "id": "GDS4332_2" }, { "dataset_id": "GDS4332", "description": "interleukin 1\u03b2", "sample_id": [ "GSM998736", "GSM998745", "GSM998762", "GSM998781", "GSM998737", "GSM998752", "GSM998763", "GSM998772", "GSM998734", "GSM998743", "GSM998759", "GSM998780", "GSM998735", "GSM998750", "GSM998760", "GSM998782", "GSM998744", "GSM998751", "GSM998761", "GSM998771", "GSM998730", "GSM998742", "GSM998747", "GSM998777", "GSM998731", "GSM998748", "GSM998756", "GSM998769", "GSM998740", "GSM998753", "GSM998766", "GSM998774", "GSM998729", "GSM998754", "GSM998767", "GSM998775", "GSM998741", "GSM998755", "GSM998768", "GSM998776" ], "type": "agent", "id": "GDS4332_3" }, { "dataset_id": "GDS4332", "description": "untreated", "sample_id": [ "GSM998739", "GSM998746", "GSM998765", "GSM998784", "GSM998738", "GSM998764", "GSM998773", "GSM998783", "GSM998733", "GSM998758", "GSM998770", "GSM998779", "GSM998732", "GSM998749", "GSM998757", "GSM998778" ], "type": "agent", "id": "GDS4332_4" }, { "dataset_id": "GDS4332", "description": "2hrs", "sample_id": [ "GSM998738", "GSM998764", "GSM998773", "GSM998783", "GSM998732", "GSM998749", "GSM998757", "GSM998778", "GSM998740", "GSM998753", "GSM998766", "GSM998774", "GSM998734", "GSM998743", "GSM998759", "GSM998780" ], "type": "time", "id": "GDS4332_5" }, { "dataset_id": "GDS4332", "description": "4hrs", "sample_id": [ "GSM998729", "GSM998754", "GSM998767", "GSM998775", "GSM998735", "GSM998750", "GSM998760", "GSM998782" ], "type": "time", "id": "GDS4332_6" }, { "dataset_id": "GDS4332", "description": "6hrs", "sample_id": [ "GSM998741", "GSM998755", "GSM998768", "GSM998776", "GSM998744", "GSM998751", "GSM998761", "GSM998771" ], "type": "time", "id": "GDS4332_7" }, { "dataset_id": "GDS4332", "description": "12hrs", "sample_id": [ "GSM998730", "GSM998742", "GSM998747", "GSM998777", "GSM998736", "GSM998745", "GSM998762", "GSM998781" ], "type": "time", "id": "GDS4332_8" }, { "dataset_id": "GDS4332", "description": "24hrs", "sample_id": [ "GSM998739", "GSM998746", "GSM998765", "GSM998784", "GSM998733", "GSM998758", "GSM998770", "GSM998779", "GSM998737", "GSM998752", "GSM998763", "GSM998772", "GSM998731", "GSM998748", "GSM998756", "GSM998769" ], "type": "time", "id": "GDS4332_9" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4332", "version": 1.0, "instances": "56", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4332.tab", "compression": "gz" } ], [ [ "GDS4333.tab" ], { "title": "Interleukin-2 null effect on the regulatory T cell-deficient scurfy model of autoimmune disease: CD4+ T-cells", "description": "Analysis of CD4+ T cells purified from pooled peripheral lymph nodes of scurfy (Sf) mice deficient in interleukin-2. Sf.Il2-/- mice develop liver inflammation, but not inflammation of skin and lung, seen in Sf mice. Results provide insight into role of IL2 in multiorgan inflammation in Sf mice.", "type": "Expression profiling by array", "pubmed_id": "21169543", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE23398", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4333", "description": "control", "sample_id": [ "GSM573825" ], "type": "genotype/variation", "id": "GDS4333_1" }, { "dataset_id": "GDS4333", "description": "Scurfy", "sample_id": [ "GSM573826", "GSM573827", "GSM573828" ], "type": "genotype/variation", "id": "GDS4333_2" }, { "dataset_id": "GDS4333", "description": "Scurfy null IL-2", "sample_id": [ "GSM573829", "GSM573830", "GSM573831" ], "type": "genotype/variation", "id": "GDS4333_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4333", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4333.tab", "compression": "gz" } ], [ [ "GDS4334.tab" ], { "title": "B7x effect on CD8 T cell-mediated diabetes model AI4\u03b1\u03b2: pancreatic CD8 T cells", "description": "Analysis of pancreatic AI4\u03b1\u03b2 CD8 T cells isolated from Rip-B7xAI4\u03b1\u03b2 (overexpressing B7x in the \u03b2 cells) and AI4\u03b1\u03b2 (lacking B7x) mice. B7x inhibits CD8 T cell-induced diabetes. Results provide insight into the molecular basis for abrogation of diabetes by B7x overexpression in \u03b2 cells.", "type": "Expression profiling by array", "pubmed_id": "22972920", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE40225", "order": "none", "update_date": "Mar 13 2013", "subsets": [ { "dataset_id": "GDS4334", "description": "AI4", "sample_id": [ "GSM988585", "GSM988586", "GSM988587" ], "type": "genotype/variation", "id": "GDS4334_1" }, { "dataset_id": "GDS4334", "description": "Rip-B7xAI4", "sample_id": [ "GSM988589", "GSM988590", "GSM988591" ], "type": "genotype/variation", "id": "GDS4334_2" }, { "dataset_id": "GDS4334", "description": "developed T1D", "sample_id": [ "GSM988585", "GSM988586", "GSM988587" ], "type": "disease state", "id": "GDS4334_3" }, { "dataset_id": "GDS4334", "description": "resistant to T1D", "sample_id": [ "GSM988589", "GSM988590", "GSM988591" ], "type": "disease state", "id": "GDS4334_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4334", "version": 1.0, "instances": "6", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4334.tab", "compression": "gz" } ], [ [ "GDS4335.tab" ], { "title": "Sox9+ pancreatic cells: developmental time course", "description": "Analysis of GFP positive cells from Sox9-EGFP pancreas isolated by FACS at various developmental stages: e10.5, e15.5, p23. Results provide insight into molecular mechanisms underlying differentiatiation of Sox9+ embryonic pancreatic progenitors into adult ductal cells or the endocrine lineage.", "type": "Expression profiling by array", "pubmed_id": "22675211", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE34060", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4335", "description": "e10.5", "sample_id": [ "GSM841158", "GSM841157", "GSM841156" ], "type": "age", "id": "GDS4335_1" }, { "dataset_id": "GDS4335", "description": "e15.5", "sample_id": [ "GSM841161", "GSM841160", "GSM841159", "GSM841164", "GSM841163", "GSM841162" ], "type": "age", "id": "GDS4335_2" }, { "dataset_id": "GDS4335", "description": "p23", "sample_id": [ "GSM841170", "GSM841169", "GSM841168", "GSM841167", "GSM841166", "GSM841165" ], "type": "age", "id": "GDS4335_3" }, { "dataset_id": "GDS4335", "description": "Ngn3+", "sample_id": [ "GSM841164", "GSM841163", "GSM841162" ], "type": "cell type", "id": "GDS4335_4" }, { "dataset_id": "GDS4335", "description": "Sox9+", "sample_id": [ "GSM841167", "GSM841166", "GSM841165", "GSM841161", "GSM841160", "GSM841159", "GSM841158", "GSM841157", "GSM841156" ], "type": "cell type", "id": "GDS4335_5" }, { "dataset_id": "GDS4335", "description": "Sox9-", "sample_id": [ "GSM841170", "GSM841169", "GSM841168" ], "type": "cell type", "id": "GDS4335_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4335", "version": 1.0, "instances": "15", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4335.tab", "compression": "gz" } ], [ [ "GDS4336.tab" ], { "title": "Pancreatic ductal adenocarcinoma tumor and adjacent non-tumor tissue", "description": "Analysis of 45 matching pairs of pancreatic ductal adenocarcinoma (PDAC) tumor and adjacent non-tumor tissue. Results provide insight into tumor markers with prognostic significance and molecular mechanisms underlying PDAC.", "type": "Expression profiling by array", "pubmed_id": [ "22363658", "23918603" ], "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "90", "value_type": "transformed count", "reference_series": "GSE28735", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS4336", "description": "PDAC tumor", "sample_id": [ "GSM711920", "GSM711918", "GSM711916", "GSM711914", "GSM711912", "GSM711986", "GSM711984", "GSM711982", "GSM711980", "GSM711992", "GSM711990", "GSM711910", "GSM711988", "GSM711978", "GSM711976", "GSM711974", "GSM711972", "GSM711970", "GSM711968", "GSM711966", "GSM711964", "GSM711962", "GSM711908", "GSM711960", "GSM711958", "GSM711956", "GSM711954", "GSM711952", "GSM711950", "GSM711948", "GSM711946", "GSM711944", "GSM711942", "GSM711906", "GSM711940", "GSM711938", "GSM711936", "GSM711934", "GSM711932", "GSM711930", "GSM711928", "GSM711926", "GSM711924", "GSM711922", "GSM711904" ], "type": "tissue", "id": "GDS4336_1" }, { "dataset_id": "GDS4336", "description": "non-tumor tissue", "sample_id": [ "GSM711921", "GSM711919", "GSM711917", "GSM711915", "GSM711913", "GSM711987", "GSM711985", "GSM711983", "GSM711981", "GSM711993", "GSM711991", "GSM711911", "GSM711989", "GSM711979", "GSM711977", "GSM711975", "GSM711973", "GSM711971", "GSM711969", "GSM711967", "GSM711965", "GSM711963", "GSM711909", "GSM711961", "GSM711959", "GSM711957", "GSM711955", "GSM711953", "GSM711951", "GSM711949", "GSM711947", "GSM711945", "GSM711943", "GSM711907", "GSM711941", "GSM711939", "GSM711937", "GSM711935", "GSM711933", "GSM711931", "GSM711929", "GSM711927", "GSM711925", "GSM711923", "GSM711905" ], "type": "tissue", "id": "GDS4336_2" }, { "dataset_id": "GDS4336", "description": "cancer death: 0", "sample_id": [ "GSM711936", "GSM711937", "GSM711938", "GSM711939", "GSM711950", "GSM711951", "GSM711956", "GSM711957", "GSM711958", "GSM711959", "GSM711960", "GSM711961", "GSM711964", "GSM711965", "GSM711966", "GSM711967", "GSM711968", "GSM711969", "GSM711972", "GSM711973", "GSM711976", "GSM711977", "GSM711980", "GSM711981", "GSM711986", "GSM711987" ], "type": "disease state", "id": "GDS4336_3" }, { "dataset_id": "GDS4336", "description": "cancer death: 1", "sample_id": [ "GSM711904", "GSM711905", "GSM711906", "GSM711907", "GSM711908", "GSM711909", "GSM711910", "GSM711911", "GSM711914", "GSM711915", "GSM711916", "GSM711917", "GSM711922", "GSM711923", "GSM711924", "GSM711925", "GSM711926", "GSM711927", "GSM711928", "GSM711929", "GSM711930", "GSM711931", "GSM711932", "GSM711933", "GSM711934", "GSM711935", "GSM711940", "GSM711941", "GSM711942", "GSM711943", "GSM711944", "GSM711945", "GSM711946", "GSM711947", "GSM711948", "GSM711949", "GSM711952", "GSM711953", "GSM711954", "GSM711955", "GSM711962", "GSM711963", "GSM711970", "GSM711971", "GSM711974", "GSM711975", "GSM711978", "GSM711979", "GSM711982", "GSM711983", "GSM711984", "GSM711985", "GSM711988", "GSM711989", "GSM711990", "GSM711991", "GSM711992", "GSM711993" ], "type": "disease state", "id": "GDS4336_4" }, { "dataset_id": "GDS4336", "description": "cancer death: na", "sample_id": [ "GSM711912", "GSM711913", "GSM711918", "GSM711919", "GSM711920", "GSM711921" ], "type": "disease state", "id": "GDS4336_5" }, { "dataset_id": "GDS4336", "description": "1", "sample_id": [ "GSM711904", "GSM711905" ], "type": "individual", "id": "GDS4336_6" }, { "dataset_id": "GDS4336", "description": "2", "sample_id": [ "GSM711906", "GSM711907" ], "type": "individual", "id": "GDS4336_7" }, { "dataset_id": "GDS4336", "description": "3", "sample_id": [ "GSM711909", "GSM711908" ], "type": "individual", "id": "GDS4336_8" }, { "dataset_id": "GDS4336", "description": "4", "sample_id": [ "GSM711910", "GSM711911" ], "type": "individual", "id": "GDS4336_9" }, { "dataset_id": "GDS4336", "description": "5", "sample_id": [ "GSM711912", "GSM711913" ], "type": "individual", "id": "GDS4336_10" }, { "dataset_id": "GDS4336", "description": "6", "sample_id": [ "GSM711914", "GSM711915" ], "type": "individual", "id": "GDS4336_11" }, { "dataset_id": "GDS4336", "description": "7", "sample_id": [ "GSM711916", "GSM711917" ], "type": "individual", "id": "GDS4336_12" }, { "dataset_id": "GDS4336", "description": "8", "sample_id": [ "GSM711918", "GSM711919" ], "type": "individual", "id": "GDS4336_13" }, { "dataset_id": "GDS4336", "description": "9", "sample_id": [ "GSM711920", "GSM711921" ], "type": "individual", "id": "GDS4336_14" }, { "dataset_id": "GDS4336", "description": "10", "sample_id": [ "GSM711922", "GSM711923" ], "type": "individual", "id": "GDS4336_15" }, { "dataset_id": "GDS4336", "description": "11", "sample_id": [ "GSM711924", "GSM711925" ], "type": "individual", "id": "GDS4336_16" }, { "dataset_id": "GDS4336", "description": "12", "sample_id": [ "GSM711926", "GSM711927" ], "type": "individual", "id": "GDS4336_17" }, { "dataset_id": "GDS4336", "description": "13", "sample_id": [ "GSM711928", "GSM711929" ], "type": "individual", "id": "GDS4336_18" }, { "dataset_id": "GDS4336", "description": "14", "sample_id": [ "GSM711930", "GSM711931" ], "type": "individual", "id": "GDS4336_19" }, { "dataset_id": "GDS4336", "description": "15", "sample_id": [ "GSM711932", "GSM711933" ], "type": "individual", "id": "GDS4336_20" }, { "dataset_id": "GDS4336", "description": "16", "sample_id": [ "GSM711934", "GSM711935" ], "type": "individual", "id": "GDS4336_21" }, { "dataset_id": "GDS4336", "description": "17", "sample_id": [ "GSM711936", "GSM711937" ], "type": "individual", "id": "GDS4336_22" }, { "dataset_id": "GDS4336", "description": "18", "sample_id": [ "GSM711938", "GSM711939" ], "type": "individual", "id": "GDS4336_23" }, { "dataset_id": "GDS4336", "description": "19", "sample_id": [ "GSM711940", "GSM711941" ], "type": "individual", "id": "GDS4336_24" }, { "dataset_id": "GDS4336", "description": "20", "sample_id": [ "GSM711942", "GSM711943" ], "type": "individual", "id": "GDS4336_25" }, { "dataset_id": "GDS4336", "description": "21", "sample_id": [ "GSM711944", "GSM711945" ], "type": "individual", "id": "GDS4336_26" }, { "dataset_id": "GDS4336", "description": "22", "sample_id": [ "GSM711946", "GSM711947" ], "type": "individual", "id": "GDS4336_27" }, { "dataset_id": "GDS4336", "description": "23", "sample_id": [ "GSM711948", "GSM711949" ], "type": "individual", "id": "GDS4336_28" }, { "dataset_id": "GDS4336", "description": "24", "sample_id": [ "GSM711950", "GSM711951" ], "type": "individual", "id": "GDS4336_29" }, { "dataset_id": "GDS4336", "description": "25", "sample_id": [ "GSM711952", "GSM711953" ], "type": "individual", "id": "GDS4336_30" }, { "dataset_id": "GDS4336", "description": "26", "sample_id": [ "GSM711954", "GSM711955" ], "type": "individual", "id": "GDS4336_31" }, { "dataset_id": "GDS4336", "description": "27", "sample_id": [ "GSM711956", "GSM711957" ], "type": "individual", "id": "GDS4336_32" }, { "dataset_id": "GDS4336", "description": "28", "sample_id": [ "GSM711958", "GSM711959" ], "type": "individual", "id": "GDS4336_33" }, { "dataset_id": "GDS4336", "description": "29", "sample_id": [ "GSM711960", "GSM711961" ], "type": "individual", "id": "GDS4336_34" }, { "dataset_id": "GDS4336", "description": "30", "sample_id": [ "GSM711962", "GSM711963" ], "type": "individual", "id": "GDS4336_35" }, { "dataset_id": "GDS4336", "description": "31", "sample_id": [ "GSM711964", "GSM711965" ], "type": "individual", "id": "GDS4336_36" }, { "dataset_id": "GDS4336", "description": "32", "sample_id": [ "GSM711966", "GSM711967" ], "type": "individual", "id": "GDS4336_37" }, { "dataset_id": "GDS4336", "description": "33", "sample_id": [ "GSM711968", "GSM711969" ], "type": "individual", "id": "GDS4336_38" }, { "dataset_id": "GDS4336", "description": "34", "sample_id": [ "GSM711970", "GSM711971" ], "type": "individual", "id": "GDS4336_39" }, { "dataset_id": "GDS4336", "description": "35", "sample_id": [ "GSM711972", "GSM711973" ], "type": "individual", "id": "GDS4336_40" }, { "dataset_id": "GDS4336", "description": "36", "sample_id": [ "GSM711974", "GSM711975" ], "type": "individual", "id": "GDS4336_41" }, { "dataset_id": "GDS4336", "description": "37", "sample_id": [ "GSM711976", "GSM711977" ], "type": "individual", "id": "GDS4336_42" }, { "dataset_id": "GDS4336", "description": "38", "sample_id": [ "GSM711978", "GSM711979" ], "type": "individual", "id": "GDS4336_43" }, { "dataset_id": "GDS4336", "description": "39", "sample_id": [ "GSM711988", "GSM711989" ], "type": "individual", "id": "GDS4336_44" }, { "dataset_id": "GDS4336", "description": "40", "sample_id": [ "GSM711990", "GSM711991" ], "type": "individual", "id": "GDS4336_45" }, { "dataset_id": "GDS4336", "description": "41", "sample_id": [ "GSM711992", "GSM711993" ], "type": "individual", "id": "GDS4336_46" }, { "dataset_id": "GDS4336", "description": "42", "sample_id": [ "GSM711980", "GSM711981" ], "type": "individual", "id": "GDS4336_47" }, { "dataset_id": "GDS4336", "description": "43", "sample_id": [ "GSM711982", "GSM711983" ], "type": "individual", "id": "GDS4336_48" }, { "dataset_id": "GDS4336", "description": "44", "sample_id": [ "GSM711984", "GSM711985" ], "type": "individual", "id": "GDS4336_49" }, { "dataset_id": "GDS4336", "description": "45", "sample_id": [ "GSM711986", "GSM711987" ], "type": "individual", "id": "GDS4336_50" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4336", "version": 1.0, "instances": "90", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4336.tab", "compression": "gz" } ], [ [ "GDS4337.tab" ], { "title": "Type 2 diabetic and hyperglycemic pancreatic islets", "description": "Analysis of pancreatic islets from type 2 diabetes (T2D) and non-diabetic cadaver donors. Glycemic control (HbA1c) levels also measured from the same individuals (normoglycemic: HbA1c < 6%; hyperglycemic: HbA1c \u2265 6%). Results provided insight into molecular basis of islet dysfunction in T2D.", "type": "Expression profiling by array", "pubmed_id": [ "22768844", "23707792" ], "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "63", "value_type": "transformed count", "reference_series": "GSE38642", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS4337", "description": "T2D", "sample_id": [ "GSM946745", "GSM946761", "GSM946739", "GSM946738", "GSM946746", "GSM946747", "GSM946711", "GSM946760", "GSM946710" ], "type": "disease state", "id": "GDS4337_1" }, { "dataset_id": "GDS4337", "description": "non-diabetic", "sample_id": [ "GSM946701", "GSM946703", "GSM946704", "GSM946706", "GSM946708", "GSM946709", "GSM946712", "GSM946720", "GSM946722", "GSM946753", "GSM946762", "GSM946707", "GSM946721", "GSM946719", "GSM946716", "GSM946751", "GSM946740", "GSM946741", "GSM946718", "GSM946737", "GSM946742", "GSM946749", "GSM946702", "GSM946713", "GSM946723", "GSM946736", "GSM946705", "GSM946715", "GSM946726", "GSM946727", "GSM946748", "GSM946756", "GSM946724", "GSM946733", "GSM946734", "GSM946754", "GSM946700", "GSM946714", "GSM946729", "GSM946731", "GSM946743", "GSM946744", "GSM946730", "GSM946755", "GSM946717", "GSM946725", "GSM946728", "GSM946752", "GSM946757", "GSM946758", "GSM946759", "GSM946732", "GSM946750", "GSM946735" ], "type": "disease state", "id": "GDS4337_2" }, { "dataset_id": "GDS4337", "description": "HbA1c --", "sample_id": [ "GSM946701", "GSM946703", "GSM946704", "GSM946706", "GSM946708", "GSM946709", "GSM946712", "GSM946720", "GSM946722", "GSM946753", "GSM946762", "GSM946745" ], "type": "other", "id": "GDS4337_3" }, { "dataset_id": "GDS4337", "description": "HbA1c 4.3", "sample_id": [ "GSM946707", "GSM946721" ], "type": "other", "id": "GDS4337_4" }, { "dataset_id": "GDS4337", "description": "HbA1c 4.5", "sample_id": [ "GSM946719" ], "type": "other", "id": "GDS4337_5" }, { "dataset_id": "GDS4337", "description": "HbA1c 4.6", "sample_id": [ "GSM946716", "GSM946751" ], "type": "other", "id": "GDS4337_6" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.0", "sample_id": [ "GSM946740" ], "type": "other", "id": "GDS4337_7" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.2", "sample_id": [ "GSM946741" ], "type": "other", "id": "GDS4337_8" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.3", "sample_id": [ "GSM946718", "GSM946737", "GSM946742", "GSM946749" ], "type": "other", "id": "GDS4337_9" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.4", "sample_id": [ "GSM946702", "GSM946713", "GSM946723", "GSM946736" ], "type": "other", "id": "GDS4337_10" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.5", "sample_id": [ "GSM946705", "GSM946715", "GSM946726", "GSM946727", "GSM946748", "GSM946756" ], "type": "other", "id": "GDS4337_11" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.6", "sample_id": [ "GSM946724", "GSM946733", "GSM946734", "GSM946754" ], "type": "other", "id": "GDS4337_12" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.8", "sample_id": [ "GSM946700", "GSM946714", "GSM946729" ], "type": "other", "id": "GDS4337_13" }, { "dataset_id": "GDS4337", "description": "HbA1c 5.9", "sample_id": [ "GSM946731", "GSM946743", "GSM946744" ], "type": "other", "id": "GDS4337_14" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.0", "sample_id": [ "GSM946730", "GSM946755" ], "type": "other", "id": "GDS4337_15" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.1", "sample_id": [ "GSM946717" ], "type": "other", "id": "GDS4337_16" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.2", "sample_id": [ "GSM946725", "GSM946728", "GSM946752", "GSM946757", "GSM946758", "GSM946739" ], "type": "other", "id": "GDS4337_17" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.4", "sample_id": [ "GSM946759" ], "type": "other", "id": "GDS4337_18" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.8", "sample_id": [ "GSM946738", "GSM946746", "GSM946747" ], "type": "other", "id": "GDS4337_19" }, { "dataset_id": "GDS4337", "description": "HbA1c 6.9", "sample_id": [ "GSM946711" ], "type": "other", "id": "GDS4337_20" }, { "dataset_id": "GDS4337", "description": "HbA1c 7.0", "sample_id": [ "GSM946732", "GSM946760" ], "type": "other", "id": "GDS4337_21" }, { "dataset_id": "GDS4337", "description": "HbA1c 7.8", "sample_id": [ "GSM946710" ], "type": "other", "id": "GDS4337_22" }, { "dataset_id": "GDS4337", "description": "HbA1c 8.0", "sample_id": [ "GSM946750" ], "type": "other", "id": "GDS4337_23" }, { "dataset_id": "GDS4337", "description": "HbA1c 8.6", "sample_id": [ "GSM946735" ], "type": "other", "id": "GDS4337_24" }, { "dataset_id": "GDS4337", "description": "HbA1c 10.0", "sample_id": [ "GSM946761" ], "type": "other", "id": "GDS4337_25" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4337", "version": 1.0, "instances": "63", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4337.tab", "compression": "gz" } ], [ [ "GDS4338.tab" ], { "title": "Cyclooxygenase-2 overexpression or deletion effect on the K-ras/Pten pancreatic ductal adenocarcinoma murine model", "description": "Analysis of PDACs from mutants with pancreatic-specific Pten loss (Pten +/-) and K-ras activation (K-rasG12D) and either COX-2 over-expression (Cox-2 COE) or knockout (Cox-2 KO) under regulation of the Pdx-1 promoter. Results provide insight into the role of COX-2 in pancreatic cancer development.", "type": "Expression profiling by array", "pubmed_id": "22784710", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE38988", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4338", "description": "Pten +/- K-rasG12D Cox-2 COE", "sample_id": [ "GSM953345", "GSM953346", "GSM953347", "GSM953348" ], "type": "genotype/variation", "id": "GDS4338_1" }, { "dataset_id": "GDS4338", "description": "Pten +/- K-rasG12D Cox-2 KO", "sample_id": [ "GSM953349", "GSM953350", "GSM953351", "GSM953352" ], "type": "genotype/variation", "id": "GDS4338_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4338", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4338.tab", "compression": "gz" } ], [ [ "GDS4339.tab" ], { "title": "Dietary saturated fat effect on small intestine", "description": "Analysis of small intestine divided into 3 equal parts along the proximal to distal axis (SI 1, SI 2, SI 3) from C57Bl/6J males fed high-fat diets varying in polyunsaturated/saturated fatty acid ratios (P/S). Results provide insight into role of dietary fat type on development of metabolic syndrome.", "type": "Expression profiling by array", "pubmed_id": "22700822", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE18586", "order": "none", "update_date": "Feb 25 2013", "subsets": [ { "dataset_id": "GDS4339", "description": "palm oil (P/S 1.0)", "sample_id": [ "GSM462270", "GSM462273", "GSM462276" ], "type": "agent", "id": "GDS4339_1" }, { "dataset_id": "GDS4339", "description": "olive oil (P/S 4.6)", "sample_id": [ "GSM462271", "GSM462274", "GSM462277" ], "type": "agent", "id": "GDS4339_2" }, { "dataset_id": "GDS4339", "description": "safflower oil (P/S 10.1)", "sample_id": [ "GSM462272", "GSM462275", "GSM462278" ], "type": "agent", "id": "GDS4339_3" }, { "dataset_id": "GDS4339", "description": "small intestine, SI 1", "sample_id": [ "GSM462270", "GSM462271", "GSM462272" ], "type": "tissue", "id": "GDS4339_4" }, { "dataset_id": "GDS4339", "description": "small intestine, SI 2", "sample_id": [ "GSM462273", "GSM462274", "GSM462275" ], "type": "tissue", "id": "GDS4339_5" }, { "dataset_id": "GDS4339", "description": "small intestine, SI 3", "sample_id": [ "GSM462276", "GSM462277", "GSM462278" ], "type": "tissue", "id": "GDS4339_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4339", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4339.tab", "compression": "gz" } ], [ [ "GDS434.tab" ], { "title": "Embryonic stem cell cholesterol metabolism mutants", "description": "Transcriptional profiling of embryonic stem (ES) cell lines with mutations affecting cholesterol transport and metabolism. Abca1 +/- and Cdk4 +/- ES lines compared with controls.", "type": "Expression profiling by array", "pubmed_id": "14727137", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE614", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS434", "description": "Abca1 +/-", "sample_id": [ "GSM9269", "GSM9270", "GSM9271", "GSM9283", "GSM9284" ], "type": "genotype/variation", "id": "GDS434_1" }, { "dataset_id": "GDS434", "description": "Cdk4 +/-", "sample_id": [ "GSM9278", "GSM9279", "GSM9280" ], "type": "genotype/variation", "id": "GDS434_2" }, { "dataset_id": "GDS434", "description": "control", "sample_id": [ "GSM9272", "GSM9273", "GSM9274", "GSM9275", "GSM9276", "GSM9277", "GSM9281", "GSM9282" ], "type": "genotype/variation", "id": "GDS434_3" }, { "dataset_id": "GDS434", "description": "embryonic stem cell", "sample_id": [ "GSM9269", "GSM9270", "GSM9271", "GSM9272", "GSM9273", "GSM9274", "GSM9275", "GSM9276", "GSM9277", "GSM9278", "GSM9279", "GSM9280" ], "type": "cell type", "id": "GDS434_4" }, { "dataset_id": "GDS434", "description": "liver", "sample_id": [ "GSM9281", "GSM9282", "GSM9283", "GSM9284" ], "type": "cell type", "id": "GDS434_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS434", "version": 1.0, "instances": "16", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS434.tab", "compression": "gz" } ], [ [ "GDS4340.tab" ], { "title": "Non-obese diabetic (NOD) and disease-resistant NOD.NOR-Chr4 models: splenic B cells", "description": "Analysis of anti-IgM-F(ab\u2019)2 fragment-stimulated, splenic B cells from non-obese diabetic (NOD) or NR4 (NOD background with Chromosome 4, type 1 diabetes (T1D)-resistance alleles) females. Results provide insight into the molecular mechanisms underlying NOD and NR4 diabetogenic activity.", "type": "Expression profiling by array", "pubmed_id": "22732593", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE37294", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS4340", "description": "anti-IgM", "sample_id": [ "GSM915692", "GSM915691", "GSM915690", "GSM915686", "GSM915685" ], "type": "agent", "id": "GDS4340_1" }, { "dataset_id": "GDS4340", "description": "control", "sample_id": [ "GSM915689", "GSM915688", "GSM915687", "GSM915684", "GSM915683", "GSM915682" ], "type": "agent", "id": "GDS4340_2" }, { "dataset_id": "GDS4340", "description": "NR4", "sample_id": [ "GSM915689", "GSM915688", "GSM915687", "GSM915692", "GSM915691", "GSM915690" ], "type": "strain", "id": "GDS4340_3" }, { "dataset_id": "GDS4340", "description": "NOD", "sample_id": [ "GSM915684", "GSM915683", "GSM915682", "GSM915686", "GSM915685" ], "type": "strain", "id": "GDS4340_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4340", "version": 1.0, "instances": "11", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4340.tab", "compression": "gz" } ], [ [ "GDS4341.tab" ], { "title": "Transcription factor MIST1-null and MIST1-induced pancreas", "description": "Analysis of pancreas from C57BL/6 adults with Mist1-null phenotype rescued by tamoxifen-induced Mist1 expression. Embryonic knockout of Mist1 leads to acinar cell dysfunction, disrupting pancreatic function. Results provide insight into the role of Mist1 in regulating mature acinar properties.", "type": "Expression profiling by array", "pubmed_id": "22510200", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE34232", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS4341", "description": "wildtype", "sample_id": [ "GSM845195", "GSM845196", "GSM845197", "GSM845198" ], "type": "genotype/variation", "id": "GDS4341_1" }, { "dataset_id": "GDS4341", "description": "MIST1-null", "sample_id": [ "GSM845199", "GSM845200", "GSM845201", "GSM845202" ], "type": "genotype/variation", "id": "GDS4341_2" }, { "dataset_id": "GDS4341", "description": "MIST1 rescue", "sample_id": [ "GSM845203", "GSM845204", "GSM845205", "GSM845206" ], "type": "genotype/variation", "id": "GDS4341_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4341", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4341.tab", "compression": "gz" } ], [ [ "GDS4342.tab" ], { "title": "Gamma secretase inhibitor MRK-003 effect on pancreatic ductal adenocarcinoma tumor xenografts", "description": "Analysis of 9 individual patient-derived, pancreatic ductal adenocarcinoma (PDAC) xenografts treated with GSI MRK-003. MRK-003 monotherapy significantly reduced tumor volume in 5 of 9 xenografts. Results provide insight into the molecular basis of MRK-003-mediated attenuation of PDAC.", "type": "Expression profiling by array", "pubmed_id": "22752426", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE37645", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4342", "description": "JH033", "sample_id": [ "GSM924986", "GSM924992" ], "type": "cell line", "id": "GDS4342_1" }, { "dataset_id": "GDS4342", "description": "Panc198", "sample_id": [ "GSM924987", "GSM924995" ], "type": "cell line", "id": "GDS4342_2" }, { "dataset_id": "GDS4342", "description": "Panc215", "sample_id": [ "GSM924985", "GSM924991" ], "type": "cell line", "id": "GDS4342_3" }, { "dataset_id": "GDS4342", "description": "Panc219", "sample_id": [ "GSM924990", "GSM924989" ], "type": "cell line", "id": "GDS4342_4" }, { "dataset_id": "GDS4342", "description": "Panc253", "sample_id": [ "GSM924982", "GSM924979" ], "type": "cell line", "id": "GDS4342_5" }, { "dataset_id": "GDS4342", "description": "Panc265", "sample_id": [ "GSM924994", "GSM924978" ], "type": "cell line", "id": "GDS4342_6" }, { "dataset_id": "GDS4342", "description": "Panc291", "sample_id": [ "GSM924983", "GSM924980" ], "type": "cell line", "id": "GDS4342_7" }, { "dataset_id": "GDS4342", "description": "Panc374", "sample_id": [ "GSM924984", "GSM924981" ], "type": "cell line", "id": "GDS4342_8" }, { "dataset_id": "GDS4342", "description": "Panc420", "sample_id": [ "GSM924988", "GSM924993" ], "type": "cell line", "id": "GDS4342_9" }, { "dataset_id": "GDS4342", "description": "MRK-003 sensitive", "sample_id": [ "GSM924993", "GSM924988", "GSM924981", "GSM924984", "GSM924978", "GSM924994", "GSM924989", "GSM924990", "GSM924992", "GSM924986" ], "type": "other", "id": "GDS4342_10" }, { "dataset_id": "GDS4342", "description": "MRK-003 non-sensitive", "sample_id": [ "GSM924980", "GSM924983", "GSM924979", "GSM924982", "GSM924991", "GSM924985", "GSM924995", "GSM924987" ], "type": "other", "id": "GDS4342_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4342", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4342.tab", "compression": "gz" } ], [ [ "GDS4343.tab" ], { "title": "Xenograft tumors generated from iKras p53 null pancreatic ductal adenocarcinoma cell lines", "description": "Analysis of xenograft tumors generated from independent iKras p53L/+ PDAC cell lines. Cultured parental lines also examined. Doxycycline treatment induced expression of oncogenic KrasG12D. Results provide insight into the molecular mechanisms underlying KrasG12D-mediated PDAC tumor maintenance.", "type": "Expression profiling by array", "pubmed_id": "22541435", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE32277", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4343", "description": "parental culture", "sample_id": [ "GSM799692", "GSM799693", "GSM799694", "GSM799695", "GSM799696", "GSM799697", "GSM799698", "GSM799699", "GSM799700", "GSM799701" ], "type": "cell type", "id": "GDS4343_1" }, { "dataset_id": "GDS4343", "description": "xenograft tumor", "sample_id": [ "GSM799673", "GSM799674", "GSM799675", "GSM799676", "GSM799677", "GSM799678", "GSM799679", "GSM799680", "GSM799681", "GSM799682", "GSM799683", "GSM799684", "GSM799685", "GSM799686", "GSM799687", "GSM799688", "GSM799689", "GSM799690", "GSM799691" ], "type": "cell type", "id": "GDS4343_2" }, { "dataset_id": "GDS4343", "description": "control culture", "sample_id": [ "GSM799702", "GSM799703", "GSM799704", "GSM799705" ], "type": "cell type", "id": "GDS4343_3" }, { "dataset_id": "GDS4343", "description": "iKras1", "sample_id": [ "GSM799677", "GSM799678", "GSM799679", "GSM799693", "GSM799698" ], "type": "cell line", "id": "GDS4343_4" }, { "dataset_id": "GDS4343", "description": "iKras2", "sample_id": [ "GSM799680", "GSM799681", "GSM799682", "GSM799683", "GSM799694", "GSM799699" ], "type": "cell line", "id": "GDS4343_5" }, { "dataset_id": "GDS4343", "description": "iKras3", "sample_id": [ "GSM799684", "GSM799685", "GSM799686", "GSM799687", "GSM799695", "GSM799700" ], "type": "cell line", "id": "GDS4343_6" }, { "dataset_id": "GDS4343", "description": "iKras4", "sample_id": [ "GSM799688", "GSM799689", "GSM799690", "GSM799691", "GSM799701", "GSM799696" ], "type": "cell line", "id": "GDS4343_7" }, { "dataset_id": "GDS4343", "description": "iKras5", "sample_id": [ "GSM799673", "GSM799674", "GSM799675", "GSM799676", "GSM799692", "GSM799697" ], "type": "cell line", "id": "GDS4343_8" }, { "dataset_id": "GDS4343", "description": "LSL-Kras1", "sample_id": [ "GSM799704", "GSM799705" ], "type": "cell line", "id": "GDS4343_9" }, { "dataset_id": "GDS4343", "description": "LSL-Kras2", "sample_id": [ "GSM799702", "GSM799703" ], "type": "cell line", "id": "GDS4343_10" }, { "dataset_id": "GDS4343", "description": "doxycycline", "sample_id": [ "GSM799673", "GSM799674", "GSM799677", "GSM799678", "GSM799681", "GSM799684", "GSM799685", "GSM799688", "GSM799689", "GSM799692", "GSM799693", "GSM799694", "GSM799695", "GSM799696", "GSM799702", "GSM799704", "GSM799680" ], "type": "protocol", "id": "GDS4343_11" }, { "dataset_id": "GDS4343", "description": "untreated", "sample_id": [ "GSM799675", "GSM799676", "GSM799679", "GSM799682", "GSM799683", "GSM799686", "GSM799687", "GSM799690", "GSM799691", "GSM799697", "GSM799698", "GSM799699", "GSM799700", "GSM799701", "GSM799703", "GSM799705" ], "type": "protocol", "id": "GDS4343_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4343", "version": 1.0, "instances": "33", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4343.tab", "compression": "gz" } ], [ [ "GDS4344.tab" ], { "title": "Diet-induced model of obesity: mesenteric adipose tissue surrounding pancreas", "description": "Analysis of adipose depot surrounding pancreas from cafeteria diet fed Wistar males. In obesity, \u03b2-cell mass increases in response to rising insulin demand; this \u03b2-cell plasticity is essential to avoid hyperglycemia onset. Results provide insight into molecular basis of \u03b2-cell mass adaptation.", "type": "Expression profiling by array", "pubmed_id": "22067319", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE36935", "order": "none", "update_date": "Feb 24 2013", "subsets": [ { "dataset_id": "GDS4344", "description": "cafeteria diet fed", "sample_id": [ "GSM906555", "GSM906556" ], "type": "protocol", "id": "GDS4344_1" }, { "dataset_id": "GDS4344", "description": "standard diet fed", "sample_id": [ "GSM906557", "GSM906558", "GSM906559" ], "type": "protocol", "id": "GDS4344_2" }, { "dataset_id": "GDS4344", "description": "obese", "sample_id": [ "GSM906555", "GSM906556" ], "type": "disease state", "id": "GDS4344_3" }, { "dataset_id": "GDS4344", "description": "lean", "sample_id": [ "GSM906557", "GSM906558", "GSM906559" ], "type": "disease state", "id": "GDS4344_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4344", "version": 1.0, "instances": "5", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4344.tab", "compression": "gz" } ], [ [ "GDS4345.tab" ], { "title": "Quadriceps muscle from cancer patients before and after surgery: sequential biopsies", "description": "Analysis of paired muscle biopsies (i.e., pre-resection baseline and 8 month post-resection follow-up, disease-free/weight-stable for previous 2 months) from upper gastrointestinal cancer patients. Results provide insight into molecular mechanisms underlying cancer-associated muscle wasting.", "type": "Expression profiling by array", "pubmed_id": "22452944", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE34111", "order": "none", "update_date": "Feb 23 2013", "subsets": [ { "dataset_id": "GDS4345", "description": "pre-surgery", "sample_id": [ "GSM842012", "GSM842013", "GSM842014", "GSM842015", "GSM842016", "GSM842017", "GSM842018", "GSM842019", "GSM842020", "GSM842021", "GSM842022", "GSM842023" ], "type": "specimen", "id": "GDS4345_1" }, { "dataset_id": "GDS4345", "description": "post-surgery", "sample_id": [ "GSM842024", "GSM842025", "GSM842026", "GSM842027", "GSM842028", "GSM842029", "GSM842030", "GSM842031", "GSM842032", "GSM842033", "GSM842034", "GSM842035" ], "type": "specimen", "id": "GDS4345_2" }, { "dataset_id": "GDS4345", "description": "control", "sample_id": [ "GSM842036", "GSM842037", "GSM842038", "GSM842039", "GSM842040", "GSM842041" ], "type": "specimen", "id": "GDS4345_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4345", "version": 1.0, "instances": "30", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4345.tab", "compression": "gz" } ], [ [ "GDS4346.tab" ], { "title": "Gli transcriptional repressor Gli3T effect on epithelioid carcinoma cell line Panc-1", "description": "Analysis of epithelioid carcinoma Panc1 cells expressing Gli3T, a transcriptional repressor of Gli. Gli transcription factors are essential for Kras initiation of pancreatic tumorigenesis. Results provide insight into molecular mechanisms underlying pancreatic epithelial transformation.", "type": "Expression profiling by array", "pubmed_id": "22493246", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE36855", "order": "none", "update_date": "Feb 23 2013", "subsets": [ { "dataset_id": "GDS4346", "description": "control", "sample_id": [ "GSM904693", "GSM904694", "GSM904695" ], "type": "genotype/variation", "id": "GDS4346_1" }, { "dataset_id": "GDS4346", "description": "Gli3T-expressing", "sample_id": [ "GSM904696", "GSM904697", "GSM904698" ], "type": "genotype/variation", "id": "GDS4346_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4346", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4346.tab", "compression": "gz" } ], [ [ "GDS4347.tab" ], { "title": "Pancreatic CD45+ immune cells from NOD model of type 1 diabetes", "description": "Analysis of pancreatic CD45+ cells from 10 week-old NOD females MRI-scanned to noninvasively visualize effects of pancreatic-islet inflammation. All NOD juveniles develop insulitis but vary highly in their progression to diabetes. Results provide insight into molecular basis of disease progression.", "type": "Expression profiling by array", "pubmed_id": "22366893", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE35096", "order": "none", "update_date": "Feb 23 2013", "subsets": [ { "dataset_id": "GDS4347", "description": "MRI T2 value: 35.3ms", "sample_id": [ "GSM861947" ], "type": "individual", "id": "GDS4347_1" }, { "dataset_id": "GDS4347", "description": "MRI T2 value: 35.24ms", "sample_id": [ "GSM861948" ], "type": "individual", "id": "GDS4347_2" }, { "dataset_id": "GDS4347", "description": "MRI T2 value: 32.77ms", "sample_id": [ "GSM861949" ], "type": "individual", "id": "GDS4347_3" }, { "dataset_id": "GDS4347", "description": "MRI T2 value: 30.02ms", "sample_id": [ "GSM861950" ], "type": "individual", "id": "GDS4347_4" }, { "dataset_id": "GDS4347", "description": "MRI T2 value: 28.98ms", "sample_id": [ "GSM861951" ], "type": "individual", "id": "GDS4347_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4347", "version": 1.0, "instances": "5", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4347.tab", "compression": "gz" } ], [ [ "GDS4348.tab" ], { "title": "Transcription factor pancreatic and duodenal homeobox 1 deficiency effect on proximal small intestine", "description": "Analysis of mature proximal small intestine with intestinal epithelium-specific pancreatic and duodenal homeobox 1 (Pdx1) inactivation. Pdx1 is essential for regulating pancreatic development and maintaining proper islet function. Results provide insight into role of Pdx1 in duodenum.", "type": "Expression profiling by array", "pubmed_id": "22135308", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29048", "order": "none", "update_date": "Feb 23 2013", "subsets": [ { "dataset_id": "GDS4348", "description": "control", "sample_id": [ "GSM719995", "GSM719996", "GSM719999", "GSM720000" ], "type": "genotype/variation", "id": "GDS4348_1" }, { "dataset_id": "GDS4348", "description": "Pdx1 knock out", "sample_id": [ "GSM719994", "GSM719997", "GSM719998", "GSM720001" ], "type": "genotype/variation", "id": "GDS4348_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4348", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4348.tab", "compression": "gz" } ], [ [ "GDS4349.tab" ], { "title": "E-cadherin/CDH1 intron2 protein isoform overexpression in Mkn28 gastric tubular adenocarcinoma cell line", "description": "Analysis of MKN28 cell line (E-cadherin positive) overexpressing E-cadherin isoform CDH1a. CDH1a overexpression promotes mild MKN28 aggregation and increases invasion. Results provide insight into role of CDH1a as a negative modulator of canonical E-cadherin function in cancer cells.", "type": "Expression profiling by array", "pubmed_id": "22752307", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE32540", "order": "none", "update_date": "Feb 23 2013", "subsets": [ { "dataset_id": "GDS4349", "description": "CDH1a isoform", "sample_id": [ "GSM806613", "GSM806614", "GSM806615" ], "type": "genotype/variation", "id": "GDS4349_1" }, { "dataset_id": "GDS4349", "description": "empty vector control", "sample_id": [ "GSM806616", "GSM806617", "GSM806618" ], "type": "genotype/variation", "id": "GDS4349_2" }, { "dataset_id": "GDS4349", "description": "CDH1 wild type", "sample_id": [ "GSM806619", "GSM806620", "GSM806621" ], "type": "genotype/variation", "id": "GDS4349_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4349", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4349.tab", "compression": "gz" } ], [ [ "GDS435.tab" ], { "title": "CD8+ effector and central memory T cells (MG-U74B)", "description": "Identification of mechanisms by which activated mast cells induce chemotaxis of antigen-experienced CD8+ effector (TEFF) but not central (TCM) memory T cells. Leukotriene B4 (LTB4) implicated in recruitment of TEFF cells to sites of allergic inflammation.", "type": "Expression profiling by array", "pubmed_id": "12949532", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE561", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS435", "description": "CD8+ effector memory T cell", "sample_id": [ "GSM8633" ], "type": "cell type", "id": "GDS435_1" }, { "dataset_id": "GDS435", "description": "CD8+ central memory T cell", "sample_id": [ "GSM8630" ], "type": "cell type", "id": "GDS435_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS435", "version": 1.0, "instances": "2", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS435.tab", "compression": "gz" } ], [ [ "GDS4350.tab" ], { "title": "Barrett esophagus: endoscopic biopsies", "description": "Analysis of endoscopic biopsies of Barrett's esophagus (BE), normal adjacent epithelia gastric cardia, and normal squamous esophagus. BE is a metaplastic condition and precursor to esophageal adenocarcinoma. Results provide insight molecular mechanisms underlying early stages of BE.", "type": "Expression profiling by array", "pubmed_id": "22603795", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE34619", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4350", "description": "Barrett esopahgus", "sample_id": [ "GSM851983", "GSM851984", "GSM851985", "GSM851986", "GSM851987", "GSM851988", "GSM851989", "GSM851990", "GSM851991", "GSM851992" ], "type": "tissue", "id": "GDS4350_1" }, { "dataset_id": "GDS4350", "description": "gastric cardia", "sample_id": [ "GSM852001", "GSM852002", "GSM852003", "GSM852004", "GSM852005", "GSM852006", "GSM852007", "GSM852008", "GSM852009", "GSM852010" ], "type": "tissue", "id": "GDS4350_2" }, { "dataset_id": "GDS4350", "description": "normal esopahgus", "sample_id": [ "GSM851993", "GSM851994", "GSM851995", "GSM851996", "GSM851997", "GSM851998", "GSM851999", "GSM852000" ], "type": "tissue", "id": "GDS4350_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4350", "version": 1.0, "instances": "28", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4350.tab", "compression": "gz" } ], [ [ "GDS4351.tab" ], { "title": "Inbred lines with different prion disease incubation times: whole brain", "description": "Analysis of brain from uninfected inbred lines with previously characterized, different prion incubation times. Prion diseases exhibit a long, clinically-silent incubation period, determined in part by genetic background. Results provide insight into molecular basis of different incubation times.", "type": "Expression profiling by array", "pubmed_id": "22869728", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE38205", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4351", "description": "NZW/OlaHsd", "sample_id": [ "GSM936703", "GSM936704", "GSM936705", "GSM936706", "GSM936707" ], "type": "strain", "id": "GDS4351_1" }, { "dataset_id": "GDS4351", "description": "SJL/OlaHsd", "sample_id": [ "GSM936708", "GSM936709", "GSM936710", "GSM936711", "GSM936712" ], "type": "strain", "id": "GDS4351_2" }, { "dataset_id": "GDS4351", "description": "FVB/NHsd", "sample_id": [ "GSM936698", "GSM936699", "GSM936700", "GSM936701", "GSM936702" ], "type": "strain", "id": "GDS4351_3" }, { "dataset_id": "GDS4351", "description": "SWR/OlaHsd", "sample_id": [ "GSM936713", "GSM936714", "GSM936715", "GSM936716", "GSM936717" ], "type": "strain", "id": "GDS4351_4" }, { "dataset_id": "GDS4351", "description": "C57BL/6JOlaHsd", "sample_id": [ "GSM936693", "GSM936694", "GSM936695", "GSM936696", "GSM936697" ], "type": "strain", "id": "GDS4351_5" }, { "dataset_id": "GDS4351", "description": "108 days incubation", "sample_id": [ "GSM936703", "GSM936704", "GSM936705", "GSM936706", "GSM936707" ], "type": "time", "id": "GDS4351_6" }, { "dataset_id": "GDS4351", "description": "122 days incubation", "sample_id": [ "GSM936708", "GSM936709", "GSM936710", "GSM936711", "GSM936712" ], "type": "time", "id": "GDS4351_7" }, { "dataset_id": "GDS4351", "description": "131 days incubation", "sample_id": [ "GSM936698", "GSM936699", "GSM936700", "GSM936701", "GSM936702" ], "type": "time", "id": "GDS4351_8" }, { "dataset_id": "GDS4351", "description": "135 days incubation", "sample_id": [ "GSM936713", "GSM936714", "GSM936715", "GSM936716", "GSM936717" ], "type": "time", "id": "GDS4351_9" }, { "dataset_id": "GDS4351", "description": "143 days incubation", "sample_id": [ "GSM936693", "GSM936694", "GSM936695", "GSM936696", "GSM936697" ], "type": "time", "id": "GDS4351_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4351", "version": 1.0, "instances": "25", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4351.tab", "compression": "gz" } ], [ [ "GDS4352.tab" ], { "title": "Cellular prion protein knockout effect on developing hippocampus", "description": "Analysis of hippocampi from cellular prion protein (PrPC)-deficient, FVB newborns (4.5-day-old) and adults (3-mo-old). PrPc protein is widely expressed throughout the CNS; mice lacking PrP are resistant to prion infection. Results provide insight into the influence of PrPC on the developing CNS.", "type": "Expression profiling by array", "pubmed_id": "21406608", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE21718", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4352", "description": "adult", "sample_id": [ "GSM541781", "GSM541782", "GSM541783", "GSM541784", "GSM541785", "GSM541786", "GSM541787", "GSM541788" ], "type": "development stage", "id": "GDS4352_1" }, { "dataset_id": "GDS4352", "description": "newborn", "sample_id": [ "GSM541789", "GSM541790", "GSM541791", "GSM541792", "GSM541793", "GSM541794" ], "type": "development stage", "id": "GDS4352_2" }, { "dataset_id": "GDS4352", "description": "Prnp wild type", "sample_id": [ "GSM541794", "GSM541793", "GSM541792", "GSM541788", "GSM541787", "GSM541786", "GSM541785" ], "type": "genotype/variation", "id": "GDS4352_3" }, { "dataset_id": "GDS4352", "description": "Prnp knockout", "sample_id": [ "GSM541791", "GSM541790", "GSM541789", "GSM541784", "GSM541783", "GSM541782", "GSM541781" ], "type": "genotype/variation", "id": "GDS4352_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4352", "version": 1.0, "instances": "14", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4352.tab", "compression": "gz" } ], [ [ "GDS4353.tab" ], { "title": "Cerebral Palsy: skeletal muscle biopsies", "description": "Analysis of gracilis and semitendinosus muscle biopsies from pediatric cerebral palsy (CP) patients. Muscles from CP patients are spastic and form contractures limiting range of motion and joint function. Results provide insight into molecular basis of skeletal muscle response to CP.", "type": "Expression profiling by array", "pubmed_id": "22956992", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "count", "reference_series": "GSE31243", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4353", "description": "Cerebral Palsy", "sample_id": [ "GSM774490", "GSM774491", "GSM774492", "GSM774493", "GSM774494", "GSM774495", "GSM774496", "GSM774497", "GSM774498", "GSM774499", "GSM774500", "GSM774501", "GSM774502", "GSM774503", "GSM774504", "GSM774505", "GSM774506", "GSM774507", "GSM774508", "GSM774509" ], "type": "disease state", "id": "GDS4353_1" }, { "dataset_id": "GDS4353", "description": "control", "sample_id": [ "GSM774470", "GSM774471", "GSM774472", "GSM774473", "GSM774474", "GSM774475", "GSM774476", "GSM774477", "GSM774478", "GSM774479", "GSM774480", "GSM774481", "GSM774482", "GSM774483", "GSM774484", "GSM774485", "GSM774486", "GSM774487", "GSM774488", "GSM774489" ], "type": "disease state", "id": "GDS4353_2" }, { "dataset_id": "GDS4353", "description": "gracilis muscle", "sample_id": [ "GSM774490", "GSM774492", "GSM774494", "GSM774496", "GSM774498", "GSM774500", "GSM774502", "GSM774504", "GSM774506", "GSM774508", "GSM774470", "GSM774472", "GSM774474", "GSM774476", "GSM774478", "GSM774480", "GSM774482", "GSM774484", "GSM774486", "GSM774488" ], "type": "tissue", "id": "GDS4353_3" }, { "dataset_id": "GDS4353", "description": "semitendinosus muscle", "sample_id": [ "GSM774491", "GSM774493", "GSM774495", "GSM774497", "GSM774499", "GSM774501", "GSM774503", "GSM774505", "GSM774507", "GSM774509", "GSM774471", "GSM774473", "GSM774475", "GSM774477", "GSM774479", "GSM774481", "GSM774483", "GSM774485", "GSM774487", "GSM774489" ], "type": "tissue", "id": "GDS4353_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4353", "version": 1.0, "instances": "40", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4353.tab", "compression": "gz" } ], [ [ "GDS4354.tab" ], { "title": "Endogenous Cushing's Syndrome bone biopsies: pre- and post-surgery", "description": "Analysis of bone biopsies from Cushing\u2019s syndrome (CS) patients, before and mean 3 months after surgical treatment. Excess GC-induced bone loss is a serious complication in patients with endogenous CS. Results provide insight molecular mechanisms by which excess GCs influence bone metabolism.", "type": "Expression profiling by array", "pubmed_id": [ "19875485", "22450549" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE30159", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4354", "description": "pre-surgerical", "sample_id": [ "GSM746845", "GSM746844", "GSM746843", "GSM746842", "GSM746841", "GSM746840", "GSM746839", "GSM746838", "GSM746837" ], "type": "specimen", "id": "GDS4354_1" }, { "dataset_id": "GDS4354", "description": "post-surgerical", "sample_id": [ "GSM746854", "GSM746853", "GSM746852", "GSM746851", "GSM746850", "GSM746849", "GSM746848", "GSM746847", "GSM746846" ], "type": "specimen", "id": "GDS4354_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4354", "version": 1.0, "instances": "18", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4354.tab", "compression": "gz" } ], [ [ "GDS4355.tab" ], { "title": "Chlamydia muridarum genital tract infection model: CD4 T cells", "description": "Anaysis of Chlamydia-specific CD4 T cell clones that terminate Chlamydia replication in epithelial cells via an iNOS-dependent or iNOS-independent mechanism. Results provide insight into two independent and redundant T cell mechanisms for clearing C. muridarum genital tract infections.", "type": "Expression profiling by array", "pubmed_id": "22238459", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE32128", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS4355", "description": "uvmo-2", "sample_id": [ "GSM796425", "GSM796426", "GSM796427", "GSM796428" ], "type": "cell line", "id": "GDS4355_1" }, { "dataset_id": "GDS4355", "description": "uvmo-3", "sample_id": [ "GSM796429", "GSM796430", "GSM796431", "GSM796432" ], "type": "cell line", "id": "GDS4355_2" }, { "dataset_id": "GDS4355", "description": "uvmo-4", "sample_id": [ "GSM796417", "GSM796418", "GSM796419", "GSM796420" ], "type": "cell line", "id": "GDS4355_3" }, { "dataset_id": "GDS4355", "description": "Spl4-10", "sample_id": [ "GSM796421", "GSM796422", "GSM796423", "GSM796424" ], "type": "cell line", "id": "GDS4355_4" }, { "dataset_id": "GDS4355", "description": "iNOS dependent", "sample_id": [ "GSM796420", "GSM796419", "GSM796418", "GSM796417", "GSM796424", "GSM796423", "GSM796422", "GSM796421" ], "type": "cell type", "id": "GDS4355_5" }, { "dataset_id": "GDS4355", "description": "iNOS independent", "sample_id": [ "GSM796432", "GSM796431", "GSM796430", "GSM796429", "GSM796428", "GSM796427", "GSM796426", "GSM796425" ], "type": "cell type", "id": "GDS4355_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4355", "version": 1.0, "instances": "16", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4355.tab", "compression": "gz" } ], [ [ "GDS4356.tab" ], { "title": "Zaire ebolavirus infection of macrophage: time course", "description": "Analysis of primary macrophages from three donors (D1, D2, D3) up to 6 hrs after in vitro exposure to purified Zaire ebolavirus (ZEBOV) virions. ZEBOV is the etiological agent of Ebola Hemorrhagic Fever (EHF). Results provide insight into the initial response of macrophages exposed to Ebola virions.", "type": "Expression profiling by array", "pubmed_id": "22028943", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE31747", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4356", "description": "Donor 1", "sample_id": [ "GSM787940", "GSM787941", "GSM787942", "GSM787943" ], "type": "individual", "id": "GDS4356_1" }, { "dataset_id": "GDS4356", "description": "Donor 2", "sample_id": [ "GSM787944", "GSM787945", "GSM787946", "GSM787947" ], "type": "individual", "id": "GDS4356_2" }, { "dataset_id": "GDS4356", "description": "Donor 3", "sample_id": [ "GSM787948", "GSM787949", "GSM787950", "GSM787951" ], "type": "individual", "id": "GDS4356_3" }, { "dataset_id": "GDS4356", "description": "Ebola", "sample_id": [ "GSM787941", "GSM787943", "GSM787945", "GSM787947", "GSM787949", "GSM787951" ], "type": "infection", "id": "GDS4356_4" }, { "dataset_id": "GDS4356", "description": "mock", "sample_id": [ "GSM787940", "GSM787942", "GSM787944", "GSM787946", "GSM787948", "GSM787950" ], "type": "infection", "id": "GDS4356_5" }, { "dataset_id": "GDS4356", "description": "1 hour", "sample_id": [ "GSM787941", "GSM787940", "GSM787945", "GSM787944", "GSM787949", "GSM787948" ], "type": "time", "id": "GDS4356_6" }, { "dataset_id": "GDS4356", "description": "6 hour", "sample_id": [ "GSM787943", "GSM787942", "GSM787947", "GSM787946", "GSM787951", "GSM787950" ], "type": "time", "id": "GDS4356_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS4356", "version": 1.0, "instances": "12", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4356.tab", "compression": "gz" } ], [ [ "GDS4357.tab" ], { "title": "Host response to uninfected Ixodes scapularis nymphal tick attachment: time course", "description": "Analysis of ear bite-site biopsies from BALB/c hosts up to 12 hours after post nymphal tick infestation. Tick saliva facilitates and enhances viral infection. Results provide insight into immunomodulation at tick-host interface induced by tick saliva that facilitates tick-born virus transmission.", "type": "Expression profiling by array", "pubmed_id": "23077588", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE39100", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4357", "description": "Tick-free", "sample_id": [ "GSM956136", "GSM956137", "GSM956138" ], "type": "stress", "id": "GDS4357_1" }, { "dataset_id": "GDS4357", "description": "Tick-infested", "sample_id": [ "GSM956139", "GSM956140", "GSM956141", "GSM956148", "GSM956149", "GSM956150", "GSM956142", "GSM956143", "GSM956144", "GSM956145", "GSM956146", "GSM956147" ], "type": "stress", "id": "GDS4357_2" }, { "dataset_id": "GDS4357", "description": "control", "sample_id": [ "GSM956136", "GSM956137", "GSM956138" ], "type": "time", "id": "GDS4357_3" }, { "dataset_id": "GDS4357", "description": "1 hour", "sample_id": [ "GSM956139", "GSM956140", "GSM956141" ], "type": "time", "id": "GDS4357_4" }, { "dataset_id": "GDS4357", "description": "3 hours", "sample_id": [ "GSM956142", "GSM956143", "GSM956144" ], "type": "time", "id": "GDS4357_5" }, { "dataset_id": "GDS4357", "description": "6 hours", "sample_id": [ "GSM956145", "GSM956146", "GSM956147" ], "type": "time", "id": "GDS4357_6" }, { "dataset_id": "GDS4357", "description": "12 hours", "sample_id": [ "GSM956148", "GSM956149", "GSM956150" ], "type": "time", "id": "GDS4357_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4357", "version": 1.0, "instances": "15", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4357.tab", "compression": "gz" } ], [ [ "GDS4358.tab" ], { "title": "Two types of HIV-associated neurocognitive impairment: brain regions", "description": "Analysis of basal ganglia, frontal cortex, and white matter from HIV patients with HIV-associated dementia (HAD) or HAD plus HIV encephalitis (HIVE). Results provide insight into molecular events of neurological impairment and inflammation associated with HIV infection in different brain regions.", "type": "Expression profiling by array", "pubmed_id": "23049970", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "72", "value_type": "transformed count", "reference_series": "GSE35864", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4358", "description": "control", "sample_id": [ "GSM876862", "GSM876886", "GSM876838", "GSM876863", "GSM876887", "GSM876839", "GSM876864", "GSM876888", "GSM876840", "GSM876865", "GSM876889", "GSM876841", "GSM876866", "GSM876890", "GSM876842", "GSM876867", "GSM876891", "GSM876843" ], "type": "disease state", "id": "GDS4358_1" }, { "dataset_id": "GDS4358", "description": "HIV", "sample_id": [ "GSM876868", "GSM876892", "GSM876844", "GSM876869", "GSM876893", "GSM876845", "GSM876870", "GSM876894", "GSM876846", "GSM876871", "GSM876895", "GSM876847", "GSM876872", "GSM876896", "GSM876848", "GSM876873", "GSM876897", "GSM876849" ], "type": "disease state", "id": "GDS4358_2" }, { "dataset_id": "GDS4358", "description": "HIV + HAD", "sample_id": [ "GSM876874", "GSM876898", "GSM876850", "GSM876875", "GSM876899", "GSM876851", "GSM876876", "GSM876900", "GSM876852", "GSM876877", "GSM876901", "GSM876853", "GSM876878", "GSM876902", "GSM876854", "GSM876879", "GSM876903", "GSM876855", "GSM876880", "GSM876904", "GSM876856" ], "type": "disease state", "id": "GDS4358_3" }, { "dataset_id": "GDS4358", "description": "HIV + HAD + HIVE", "sample_id": [ "GSM876881", "GSM876905", "GSM876857", "GSM876882", "GSM876906", "GSM876858", "GSM876883", "GSM876907", "GSM876859", "GSM876884", "GSM876908", "GSM876860", "GSM876885", "GSM876909", "GSM876861" ], "type": "disease state", "id": "GDS4358_4" }, { "dataset_id": "GDS4358", "description": "Basal ganglia", "sample_id": [ "GSM876886", "GSM876887", "GSM876888", "GSM876889", "GSM876890", "GSM876891", "GSM876892", "GSM876893", "GSM876894", "GSM876895", "GSM876896", "GSM876897", "GSM876898", "GSM876899", "GSM876900", "GSM876901", "GSM876902", "GSM876903", "GSM876904", "GSM876905", "GSM876906", "GSM876907", "GSM876908", "GSM876909" ], "type": "tissue", "id": "GDS4358_5" }, { "dataset_id": "GDS4358", "description": "Frontal cortex", "sample_id": [ "GSM876862", "GSM876863", "GSM876864", "GSM876865", "GSM876866", "GSM876867", "GSM876868", "GSM876869", "GSM876870", "GSM876871", "GSM876872", "GSM876873", "GSM876874", "GSM876875", "GSM876876", "GSM876877", "GSM876878", "GSM876879", "GSM876880", "GSM876881", "GSM876882", "GSM876883", "GSM876884", "GSM876885" ], "type": "tissue", "id": "GDS4358_6" }, { "dataset_id": "GDS4358", "description": "White matter", "sample_id": [ "GSM876838", "GSM876839", "GSM876840", "GSM876841", "GSM876842", "GSM876843", "GSM876844", "GSM876845", "GSM876846", "GSM876847", "GSM876848", "GSM876849", "GSM876850", "GSM876851", "GSM876852", "GSM876853", "GSM876854", "GSM876855", "GSM876856", "GSM876857", "GSM876858", "GSM876859", "GSM876860", "GSM876861" ], "type": "tissue", "id": "GDS4358_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4358", "version": 1.0, "instances": "72", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4358.tab", "compression": "gz" } ], [ [ "GDS4359.tab" ], { "title": "Co-expression of tyrosine kinase receptors HER2 and HER3 in mammary epithelial cells MCF10A grown in three-dimensional cultures", "description": "Analysis of MCF10A mammary epithelial cells expressing HER2, HER3, or HER2/HER3 heterodimer. Co-expression of HER2 and HER3 induced migration and invasion of MCF10A cells. Results provide insight into the role of HER2 and HER3 in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "23062209", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE37009", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4359", "description": "HER2/HER3", "sample_id": [ "GSM908485", "GSM908489" ], "type": "genotype/variation", "id": "GDS4359_1" }, { "dataset_id": "GDS4359", "description": "HER2", "sample_id": [ "GSM908483", "GSM908487" ], "type": "genotype/variation", "id": "GDS4359_2" }, { "dataset_id": "GDS4359", "description": "HER3", "sample_id": [ "GSM908484", "GSM908488" ], "type": "genotype/variation", "id": "GDS4359_3" }, { "dataset_id": "GDS4359", "description": "control", "sample_id": [ "GSM908482", "GSM908486" ], "type": "genotype/variation", "id": "GDS4359_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4359", "version": 1.0, "instances": "8", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4359.tab", "compression": "gz" } ], [ [ "GDS436.tab" ], { "title": "CD8+ effector and central memory T cells (MG-U74C)", "description": "Identification of mechanisms by which activated mast cells induce chemotaxis of antigen-experienced CD8+ effector (TEFF) but not central (TCM) memory T cells. Leukotriene B4 (LTB4) implicated in recruitment of TEFF cells to sites of allergic inflammation.", "type": "Expression profiling by array", "pubmed_id": "12949532", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE561", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS436", "description": "CD8+ effector memory T cell", "sample_id": [ "GSM8634" ], "type": "cell type", "id": "GDS436_1" }, { "dataset_id": "GDS436", "description": "CD8+ central memory T cell", "sample_id": [ "GSM8631" ], "type": "cell type", "id": "GDS436_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS436", "version": 1.0, "instances": "2", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS436.tab", "compression": "gz" } ], [ [ "GDS4360.tab" ], { "title": "Epidermal growth factor effect on HER2-overexpressing mammary epithelial MCF10A cells: time course", "description": "Analysis of MCF10A and HER2-overexpressing MCF10A cells grown on Matrigel in the absence or presence of epidermal growth factor (EGF). MCF10A-HER2 cells exhibited autonomous growth, independent of growth factors. Results provide insight into molecular bases underlying the growth autonomy confer", "type": "Expression profiling by array", "pubmed_id": "21743488", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE18938", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4360", "description": "wild type", "sample_id": [ "GSM469156", "GSM469157", "GSM469158", "GSM469159", "GSM469160", "GSM469161", "GSM469162", "GSM469163", "GSM469164", "GSM469165" ], "type": "genotype/variation", "id": "GDS4360_1" }, { "dataset_id": "GDS4360", "description": "HER2 overexpression", "sample_id": [ "GSM469166", "GSM469167", "GSM469168", "GSM469169", "GSM469170", "GSM469171", "GSM469172", "GSM469173", "GSM469174", "GSM469175" ], "type": "genotype/variation", "id": "GDS4360_2" }, { "dataset_id": "GDS4360", "description": "untreated", "sample_id": [ "GSM469156", "GSM469157", "GSM469158", "GSM469159", "GSM469160", "GSM469166", "GSM469167", "GSM469168", "GSM469169", "GSM469170" ], "type": "agent", "id": "GDS4360_3" }, { "dataset_id": "GDS4360", "description": "EGF", "sample_id": [ "GSM469161", "GSM469162", "GSM469163", "GSM469164", "GSM469165", "GSM469171", "GSM469172", "GSM469173", "GSM469174", "GSM469175" ], "type": "agent", "id": "GDS4360_4" }, { "dataset_id": "GDS4360", "description": "1.5 days", "sample_id": [ "GSM469156", "GSM469161", "GSM469166", "GSM469171" ], "type": "time", "id": "GDS4360_5" }, { "dataset_id": "GDS4360", "description": "3 days", "sample_id": [ "GSM469157", "GSM469162", "GSM469167", "GSM469172" ], "type": "time", "id": "GDS4360_6" }, { "dataset_id": "GDS4360", "description": "5 days", "sample_id": [ "GSM469158", "GSM469163", "GSM469168", "GSM469173" ], "type": "time", "id": "GDS4360_7" }, { "dataset_id": "GDS4360", "description": "7 days", "sample_id": [ "GSM469159", "GSM469164", "GSM469169", "GSM469174" ], "type": "time", "id": "GDS4360_8" }, { "dataset_id": "GDS4360", "description": "9 days", "sample_id": [ "GSM469160", "GSM469165", "GSM469170", "GSM469175" ], "type": "time", "id": "GDS4360_9" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4360", "version": 1.0, "instances": "20", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4360.tab", "compression": "gz" } ], [ [ "GDS4361.tab" ], { "title": "AP1510, TGF\u03b1 or heregulin ligand effect on MCF10 mammary epithelial cells expressing HER2-FKBP-HA chimeric receptors", "description": "Analysis of mammary epithelial MCF10A/HER2/FKBP/HA cells treated with AP1510 to induce the chimeric HER2-FKBP molecule to homodimerize, or with TGF\u03b1 or heregulin to induce heterodimerization with EGFR or HER3. Results provide insight into signaling events following HER2 receptor dimerization.", "type": "Expression profiling by array", "pubmed_id": "21324925", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE22288", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4361", "description": "untreated", "sample_id": [ "GSM554579", "GSM554580", "GSM554581" ], "type": "agent", "id": "GDS4361_1" }, { "dataset_id": "GDS4361", "description": "AP1510", "sample_id": [ "GSM554582", "GSM554583", "GSM554584" ], "type": "agent", "id": "GDS4361_2" }, { "dataset_id": "GDS4361", "description": "TGF-alpha", "sample_id": [ "GSM554585", "GSM554586", "GSM554587" ], "type": "agent", "id": "GDS4361_3" }, { "dataset_id": "GDS4361", "description": "Heregulin", "sample_id": [ "GSM554588", "GSM554589", "GSM554590" ], "type": "agent", "id": "GDS4361_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4361", "version": 1.0, "instances": "12", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4361.tab", "compression": "gz" } ], [ [ "GDS4362.tab" ], { "title": "Mammary epithelial cell line 184A1 response to dual-pulse epidermal growth factor stimulation: time course", "description": "Analysis of 184A1 mammary epithelial cells pulsed once or twice with epidermal growth factor (EGF). Normal cells require continuous exposure to growth factors to cross a restriction point and commit to cell-cycle progression. Results provide insight into molecular events regulating S phase entry.", "type": "Expression profiling by array", "pubmed_id": "21596316", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE27629", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4362", "description": "Dual EGF Pulse", "sample_id": [ "GSM684710", "GSM684711", "GSM684712", "GSM684713", "GSM684714", "GSM684715", "GSM684716", "GSM684717", "GSM684718", "GSM684719", "GSM684720", "GSM684721", "GSM684722" ], "type": "protocol", "id": "GDS4362_1" }, { "dataset_id": "GDS4362", "description": "Single EGF Pulse", "sample_id": [ "GSM684723", "GSM684724", "GSM684725", "GSM684726" ], "type": "protocol", "id": "GDS4362_2" }, { "dataset_id": "GDS4362", "description": "0 min", "sample_id": [ "GSM684710" ], "type": "time", "id": "GDS4362_3" }, { "dataset_id": "GDS4362", "description": "30 min", "sample_id": [ "GSM684711" ], "type": "time", "id": "GDS4362_4" }, { "dataset_id": "GDS4362", "description": "60 min", "sample_id": [ "GSM684712" ], "type": "time", "id": "GDS4362_5" }, { "dataset_id": "GDS4362", "description": "120 min", "sample_id": [ "GSM684713" ], "type": "time", "id": "GDS4362_6" }, { "dataset_id": "GDS4362", "description": "180 min", "sample_id": [ "GSM684714" ], "type": "time", "id": "GDS4362_7" }, { "dataset_id": "GDS4362", "description": "300 min", "sample_id": [ "GSM684715" ], "type": "time", "id": "GDS4362_8" }, { "dataset_id": "GDS4362", "description": "360 min", "sample_id": [ "GSM684716" ], "type": "time", "id": "GDS4362_9" }, { "dataset_id": "GDS4362", "description": "420 min", "sample_id": [ "GSM684717" ], "type": "time", "id": "GDS4362_10" }, { "dataset_id": "GDS4362", "description": "480 min", "sample_id": [ "GSM684718" ], "type": "time", "id": "GDS4362_11" }, { "dataset_id": "GDS4362", "description": "510 min", "sample_id": [ "GSM684719", "GSM684723" ], "type": "time", "id": "GDS4362_12" }, { "dataset_id": "GDS4362", "description": "540 min", "sample_id": [ "GSM684720", "GSM684724" ], "type": "time", "id": "GDS4362_13" }, { "dataset_id": "GDS4362", "description": "600 min", "sample_id": [ "GSM684721", "GSM684725" ], "type": "time", "id": "GDS4362_14" }, { "dataset_id": "GDS4362", "description": "660 min", "sample_id": [ "GSM684722", "GSM684726" ], "type": "time", "id": "GDS4362_15" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4362", "version": 1.0, "instances": "17", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4362.tab", "compression": "gz" } ], [ [ "GDS4363.tab" ], { "title": "CD4CD45Rbhi T-cell transfer colitis model: time course", "description": "Temporal analysis of colon tissue from RAG-1-/- C57BL/6 males injected with CD4+CD45RBhigh T cells from healthy wild type C57BL/6 males to induce colitis. T cells critically regulate clinical inflammatory bowel diseases (IBD). Results provide insight into the molecular basis of colitis development.", "type": "Expression profiling by array", "pubmed_id": "22179924", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE27302", "order": "ordered", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4363", "description": "control", "sample_id": [ "GSM675083", "GSM675084", "GSM675085", "GSM675086" ], "type": "time", "id": "GDS4363_1" }, { "dataset_id": "GDS4363", "description": "2 weeks", "sample_id": [ "GSM675087", "GSM675088", "GSM675089", "GSM675090" ], "type": "time", "id": "GDS4363_2" }, { "dataset_id": "GDS4363", "description": "4 weeks", "sample_id": [ "GSM675091", "GSM675092", "GSM675093", "GSM675094" ], "type": "time", "id": "GDS4363_3" }, { "dataset_id": "GDS4363", "description": "6 weeks", "sample_id": [ "GSM675095", "GSM675096", "GSM675097", "GSM675098" ], "type": "time", "id": "GDS4363_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4363", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4363.tab", "compression": "gz" } ], [ [ "GDS4364.tab" ], { "title": "Natural and induced Foxp3+ regulatory T cells and Foxp3-deficient induced regulatory T cells", "description": "Analysis of 3 subsets of sorted Tregs: natural (nTreg), induced (iTreg), and iTregs that lost Foxp3 expression (ex-iTreg), from spleens and mesenteric lymph nodes of BALB/c Rag1-/- mice treated with WT nTregs and WT iTregs. Results provide insight into molecular relationships among the Treg subsets.", "type": "Expression profiling by array", "pubmed_id": "23125413", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35543", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4364", "description": "nTreg", "sample_id": [ "GSM870351", "GSM870352" ], "type": "cell type", "id": "GDS4364_1" }, { "dataset_id": "GDS4364", "description": "iTreg", "sample_id": [ "GSM870353", "GSM870354" ], "type": "cell type", "id": "GDS4364_2" }, { "dataset_id": "GDS4364", "description": "ex-iTreg", "sample_id": [ "GSM870355", "GSM870356" ], "type": "cell type", "id": "GDS4364_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4364", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4364.tab", "compression": "gz" } ], [ [ "GDS4365.tab" ], { "title": "Intestinal mucosa response to active and inactive ulcerative colitis: colon biopsies", "description": "Analysis of colonic biopsies from patients with histologically active or inactive UC and from healthy, non-inflammatory controls. UC is a chronic inflammatory disease with periods of active disease followed by remission. Results provide insight into molecular events associated with UC remission.", "type": "Expression profiling by array", "pubmed_id": "23135761", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "transformed count", "reference_series": "GSE38713", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4365", "description": "UC_remission (involved mucosa)", "sample_id": [ "GSM948568", "GSM948569", "GSM948563", "GSM948570", "GSM948564", "GSM948565", "GSM948566", "GSM948567" ], "type": "disease state", "id": "GDS4365_1" }, { "dataset_id": "GDS4365", "description": "UC_active (involved mucosa)", "sample_id": [ "GSM948585", "GSM948571", "GSM948573", "GSM948575", "GSM948577", "GSM948579", "GSM948581", "GSM948583", "GSM948586", "GSM948587", "GSM948588", "GSM948589", "GSM948590", "GSM948591", "GSM948592" ], "type": "disease state", "id": "GDS4365_2" }, { "dataset_id": "GDS4365", "description": "UC_active (non-involved mucosa)", "sample_id": [ "GSM948580", "GSM948582", "GSM948572", "GSM948574", "GSM948576", "GSM948578", "GSM948584" ], "type": "disease state", "id": "GDS4365_3" }, { "dataset_id": "GDS4365", "description": "control", "sample_id": [ "GSM948554", "GSM948555", "GSM948556", "GSM948557", "GSM948558", "GSM948559", "GSM948560", "GSM948561", "GSM948562", "GSM948550", "GSM948551", "GSM948552", "GSM948553" ], "type": "disease state", "id": "GDS4365_4" }, { "dataset_id": "GDS4365", "description": "n/a", "sample_id": [ "GSM948550", "GSM948551", "GSM948552", "GSM948553", "GSM948554", "GSM948555", "GSM948556", "GSM948557", "GSM948558", "GSM948559", "GSM948560", "GSM948561", "GSM948562" ], "type": "agent", "id": "GDS4365_5" }, { "dataset_id": "GDS4365", "description": "azathioprine", "sample_id": [ "GSM948563", "GSM948564", "GSM948569", "GSM948573", "GSM948574", "GSM948575", "GSM948576", "GSM948579", "GSM948580", "GSM948583", "GSM948584", "GSM948589", "GSM948590", "GSM948591", "GSM948592" ], "type": "agent", "id": "GDS4365_6" }, { "dataset_id": "GDS4365", "description": "5-ASA", "sample_id": [ "GSM948565", "GSM948566", "GSM948567", "GSM948568", "GSM948570", "GSM948571", "GSM948572", "GSM948577", "GSM948578", "GSM948581", "GSM948582", "GSM948588" ], "type": "agent", "id": "GDS4365_7" }, { "dataset_id": "GDS4365", "description": "no treatment", "sample_id": [ "GSM948585", "GSM948586" ], "type": "agent", "id": "GDS4365_8" }, { "dataset_id": "GDS4365", "description": "systemic steroids", "sample_id": [ "GSM948587" ], "type": "agent", "id": "GDS4365_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4365", "version": 1.0, "instances": "43", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4365.tab", "compression": "gz" } ], [ [ "GDS4366.tab" ], { "title": "Metalloprotease ADAMTS-12 deficiency effect on DSS-induced colitis: distal colon", "description": "Analysis of distal colon from dextran sodium sulfate (DSS)-treated, Adamts12 knockouts. Metalloprotease ADAMTS-12 deficient mice exhibit more severe inflammation from DSS challenge compared with their wild-type littermates. Results provide insight into the role of ADAMTS-12 in inflammation.", "type": "Expression profiling by array", "pubmed_id": "23019333", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE40529", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4366", "description": "wildtype", "sample_id": [ "GSM995707", "GSM995709" ], "type": "genotype/variation", "id": "GDS4366_1" }, { "dataset_id": "GDS4366", "description": "Adamts12-knockout", "sample_id": [ "GSM995708", "GSM995710" ], "type": "genotype/variation", "id": "GDS4366_2" }, { "dataset_id": "GDS4366", "description": "untreated", "sample_id": [ "GSM995707", "GSM995708" ], "type": "agent", "id": "GDS4366_3" }, { "dataset_id": "GDS4366", "description": "DSS", "sample_id": [ "GSM995709", "GSM995710" ], "type": "agent", "id": "GDS4366_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4366", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4366.tab", "compression": "gz" } ], [ [ "GDS4367.tab" ], { "title": "Azoxymethane/dextran sulfate sodium-induced ulcerative colitis-associated colorectal cancer model: time course", "description": "Temporal analysis of colon from AOM/DSS-induced model of ulcerative colitis-associated colorectal cancer (UC-CRC). Nonresolving inflammation is associated with increased incidence of CRC. Results provide insight into molecular mechanisms underlying the development from colitis to colorectal cancer.", "type": "Expression profiling by array", "pubmed_id": "22610167", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE31106", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS4367", "description": "control", "sample_id": [ "GSM770092", "GSM770093", "GSM770094" ], "type": "agent", "id": "GDS4367_1" }, { "dataset_id": "GDS4367", "description": "AOM/DSS", "sample_id": [ "GSM770095", "GSM770096", "GSM770097", "GSM770098", "GSM770099", "GSM770100", "GSM770101", "GSM770102", "GSM770103", "GSM770104", "GSM770105", "GSM770106", "GSM770107", "GSM770108", "GSM770109" ], "type": "agent", "id": "GDS4367_2" }, { "dataset_id": "GDS4367", "description": "week 2", "sample_id": [ "GSM770092", "GSM770093", "GSM770094", "GSM770095", "GSM770096", "GSM770097" ], "type": "time", "id": "GDS4367_3" }, { "dataset_id": "GDS4367", "description": "week 4", "sample_id": [ "GSM770098", "GSM770099", "GSM770100" ], "type": "time", "id": "GDS4367_4" }, { "dataset_id": "GDS4367", "description": "week 6", "sample_id": [ "GSM770101", "GSM770102", "GSM770103" ], "type": "time", "id": "GDS4367_5" }, { "dataset_id": "GDS4367", "description": "week 8", "sample_id": [ "GSM770104", "GSM770105", "GSM770106" ], "type": "time", "id": "GDS4367_6" }, { "dataset_id": "GDS4367", "description": "week 20", "sample_id": [ "GSM770107", "GSM770108", "GSM770109" ], "type": "time", "id": "GDS4367_7" }, { "dataset_id": "GDS4367", "description": "normal control", "sample_id": [ "GSM770092", "GSM770093", "GSM770094" ], "type": "disease state", "id": "GDS4367_8" }, { "dataset_id": "GDS4367", "description": "inflamed colorectal mucosa", "sample_id": [ "GSM770095", "GSM770096", "GSM770097" ], "type": "disease state", "id": "GDS4367_9" }, { "dataset_id": "GDS4367", "description": "low grade dysplasia", "sample_id": [ "GSM770098", "GSM770099", "GSM770100" ], "type": "disease state", "id": "GDS4367_10" }, { "dataset_id": "GDS4367", "description": "high grade dysplasia", "sample_id": [ "GSM770101", "GSM770102", "GSM770103", "GSM770104", "GSM770105", "GSM770106" ], "type": "disease state", "id": "GDS4367_11" }, { "dataset_id": "GDS4367", "description": "colorectal adenocarcinoma", "sample_id": [ "GSM770107", "GSM770108", "GSM770109" ], "type": "disease state", "id": "GDS4367_12" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4367", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4367.tab", "compression": "gz" } ], [ [ "GDS4368.tab" ], { "title": "DSS-induced colitis model response to L-arginine supplementation", "description": "Analysis of colon from dextran sulfate sodium (DSS)-treated C57BL/6 males following L-arginine supplementation. L-Arg supplementation improves clinical parameters of DSS-induced colitis. Results provide insight into molecular mechanisms underlying the clinical benefit of L-Arg supplementation.", "type": "Expression profiling by array", "pubmed_id": "22428068", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE34874", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4368", "description": "DSS-induced colitis", "sample_id": [ "GSM856813", "GSM856814", "GSM856815", "GSM856816", "GSM856817", "GSM856818" ], "type": "disease state", "id": "GDS4368_1" }, { "dataset_id": "GDS4368", "description": "control", "sample_id": [ "GSM856807", "GSM856808", "GSM856809", "GSM856810", "GSM856811", "GSM856812" ], "type": "disease state", "id": "GDS4368_2" }, { "dataset_id": "GDS4368", "description": "L-Arg", "sample_id": [ "GSM856810", "GSM856811", "GSM856812", "GSM856816", "GSM856817", "GSM856818" ], "type": "agent", "id": "GDS4368_3" }, { "dataset_id": "GDS4368", "description": "water", "sample_id": [ "GSM856807", "GSM856808", "GSM856809", "GSM856813", "GSM856814", "GSM856815" ], "type": "agent", "id": "GDS4368_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4368", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4368.tab", "compression": "gz" } ], [ [ "GDS4369.tab" ], { "title": "Normal colonic lamina propria macrophage and dendritic cell populations", "description": "Analysis of sorted, steady-state colonic cells subdivided into 4 populations: 2 DC subsets and 2 MP subsets based on CD11c and F4/80 expression. DCs and MPs are important for immunological homeostasis in colon. Results provide insight into molecular characterization of colonic MP and DC populations.", "type": "Expression profiling by array", "pubmed_id": "22231304", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE27859", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4369", "description": "macrophage CD11clow F4/80hi", "sample_id": [ "GSM687732", "GSM687733" ], "type": "cell type", "id": "GDS4369_1" }, { "dataset_id": "GDS4369", "description": "macrophage CD11cint F4/80hi", "sample_id": [ "GSM687737", "GSM687738", "GSM687739" ], "type": "cell type", "id": "GDS4369_2" }, { "dataset_id": "GDS4369", "description": "dendritic CD11chi F4/80low", "sample_id": [ "GSM687734", "GSM687735", "GSM687736" ], "type": "cell type", "id": "GDS4369_3" }, { "dataset_id": "GDS4369", "description": "dendritic CD11cint F4/80int", "sample_id": [ "GSM687740", "GSM687741" ], "type": "cell type", "id": "GDS4369_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4369", "version": 1.0, "instances": "10", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4369.tab", "compression": "gz" } ], [ [ "GDS437.tab" ], { "title": "Heart transplants", "description": "Examination of immunologic tolerance induction achieved in cardiac allografts from BALB/c to C57BL/6 mice by daily intraperitoneal injection of anti-CD80 and anti-CD86 monoclonal antibodies (mAbs).", "type": "Expression profiling by array", "pubmed_id": "12966135", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE582", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS437", "description": "isograft", "sample_id": [ "GSM8926", "GSM8927", "GSM8931", "GSM8932", "GSM8933" ], "type": "protocol", "id": "GDS437_1" }, { "dataset_id": "GDS437", "description": "tolerizing allograft", "sample_id": [ "GSM8929", "GSM8930", "GSM8936", "GSM8937", "GSM8938", "GSM8939" ], "type": "protocol", "id": "GDS437_2" }, { "dataset_id": "GDS437", "description": "rejecting allograft", "sample_id": [ "GSM8928", "GSM8934", "GSM8935" ], "type": "protocol", "id": "GDS437_3" }, { "dataset_id": "GDS437", "description": "7 day", "sample_id": [ "GSM8926", "GSM8928", "GSM8929", "GSM8931", "GSM8932", "GSM8934", "GSM8935", "GSM8936", "GSM8937" ], "type": "time", "id": "GDS437_4" }, { "dataset_id": "GDS437", "description": "70 day", "sample_id": [ "GSM8927", "GSM8930", "GSM8933", "GSM8938", "GSM8939" ], "type": "time", "id": "GDS437_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS437", "version": 1.0, "instances": "14", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS437.tab", "compression": "gz" } ], [ [ "GDS4370.tab" ], { "title": "Effect of macrophage-specific peroxisome proliferator-activated receptor-gamma deficiency on induced inflammatory bowel disease", "description": "Analysis of colon from macrophage PPAR\u03b3-deficient C57BL/6 mice and control littermates following dextran sulfate sodium challenge to induce colitis. Deficiency of PPAR\u03b3 in macrophages worsens colitis severity. Results provide insight into molecular basis of the effects of macrophage PPAR\u03b3 in IBD.", "type": "Expression profiling by array", "pubmed_id": "21068720", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23421", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4370", "description": "wild type", "sample_id": [ "GSM574340", "GSM574341", "GSM574342" ], "type": "genotype/variation", "id": "GDS4370_1" }, { "dataset_id": "GDS4370", "description": "PPAR gamma deficient", "sample_id": [ "GSM574343", "GSM574344", "GSM574345" ], "type": "genotype/variation", "id": "GDS4370_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4370", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4370.tab", "compression": "gz" } ], [ [ "GDS4371.tab" ], { "title": "DSS-induced colitis model response to enhanced siRNA targeting of Tumor necrosis factor \u03b1", "description": "Analysis of distal colon from dextran sulfate sodium-treated C57BL/6 females after administration of chemically modified siRNA against TNF\u03b1, a proinflammatory cytokine involved in inflammatory bowel disease (IBD). Results provide insight into functionally enhanced siRNA targeting of TNF\u03b1 in IBD.", "type": "Expression profiling by array", "pubmed_id": "22044934", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE31906", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4371", "description": "control", "sample_id": [ "GSM790907", "GSM790908", "GSM790909", "GSM790910", "GSM790911", "GSM790912", "GSM790913", "GSM790914", "GSM790915" ], "type": "protocol", "id": "GDS4371_1" }, { "dataset_id": "GDS4371", "description": "siRNA scrambled", "sample_id": [ "GSM790916", "GSM790917", "GSM790918", "GSM790919", "GSM790920", "GSM790921", "GSM790922" ], "type": "protocol", "id": "GDS4371_2" }, { "dataset_id": "GDS4371", "description": "siRNA TNFa", "sample_id": [ "GSM790923", "GSM790924", "GSM790925", "GSM790926", "GSM790927", "GSM790928" ], "type": "protocol", "id": "GDS4371_3" }, { "dataset_id": "GDS4371", "description": "siRNA TNFa-OMe", "sample_id": [ "GSM790929", "GSM790930", "GSM790931", "GSM790932", "GSM790933", "GSM790934" ], "type": "protocol", "id": "GDS4371_4" }, { "dataset_id": "GDS4371", "description": "siRNA TNFa-OMe-P", "sample_id": [ "GSM790935", "GSM790936", "GSM790937", "GSM790938", "GSM790939", "GSM790940", "GSM790941", "GSM790942" ], "type": "protocol", "id": "GDS4371_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4371", "version": 1.0, "instances": "36", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4371.tab", "compression": "gz" } ], [ [ "GDS4372.tab" ], { "title": "Intestinal epithelium response to ursodeoxycholic acid", "description": "Analysis of normal colon epithelium of C57BL/6J females fed a standard diet containing 0.4% ursodeoxycholic acid (UDCA). UDCA mitigates colon carcinogenesis in humans and in animal models. Results provide insight into the molecular mechanisms underlying the anticarcinogenic action of UDCA.", "type": "Expression profiling by array", "pubmed_id": "21805474", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE21266", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4372", "description": "control", "sample_id": [ "GSM531768", "GSM531769", "GSM531770" ], "type": "growth protocol", "id": "GDS4372_1" }, { "dataset_id": "GDS4372", "description": "ursodeoxycholic acid", "sample_id": [ "GSM531771", "GSM531772", "GSM531773" ], "type": "growth protocol", "id": "GDS4372_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4372", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4372.tab", "compression": "gz" } ], [ [ "GDS4373.tab" ], { "title": "Activated Autoimmune Regulator (AIRE)-deficient, CD8+CD28low regulatory T lymphocytes", "description": "Analysis of AIRE-deficient, CD8+CD28low regulatory T (Treg) cells stimulated with allogeneic antigen-presenting cells (APC) and anti-CD3 antibody. Results provide insight into the role of AIRE in the function of regulatory T-cell populations, which are central to the prevention of immunopathology.", "type": "Expression profiling by array", "pubmed_id": "21746930", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE30129", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4373", "description": "AIRE knock out", "sample_id": [ "GSM745922", "GSM745926", "GSM745930", "GSM745924", "GSM745928", "GSM745932" ], "type": "genotype/variation", "id": "GDS4373_1" }, { "dataset_id": "GDS4373", "description": "wild type", "sample_id": [ "GSM745925", "GSM745929", "GSM745933", "GSM745923", "GSM745927", "GSM745931" ], "type": "genotype/variation", "id": "GDS4373_2" }, { "dataset_id": "GDS4373", "description": "APC + anti-CD3 Ab activated", "sample_id": [ "GSM745928", "GSM745932", "GSM745925", "GSM745929", "GSM745933", "GSM745924" ], "type": "protocol", "id": "GDS4373_3" }, { "dataset_id": "GDS4373", "description": "native", "sample_id": [ "GSM745922", "GSM745926", "GSM745930", "GSM745923", "GSM745927", "GSM745931" ], "type": "protocol", "id": "GDS4373_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4373", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4373.tab", "compression": "gz" } ], [ [ "GDS4374.tab" ], { "title": "Entamoeba histolytica infected sigmoid colon", "description": "Analysis of colon biopsies from individuals during acute E. histolytica diarrhea (day 1) versus convalescence (day 60) post metronidazole treatment. The E. histolytica pathogen causes diarrhea and colitis. Results provide insight into the molecular mechanisms underlying amebic colitis pathology.", "type": "Expression profiling by array", "pubmed_id": "21586335", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE23750", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4374", "description": "day 1", "sample_id": [ "GSM586091", "GSM586092", "GSM586093", "GSM586094", "GSM586095", "GSM586096", "GSM586097", "GSM586098" ], "type": "time", "id": "GDS4374_1" }, { "dataset_id": "GDS4374", "description": "day 60", "sample_id": [ "GSM586100", "GSM586101", "GSM586102", "GSM586103", "GSM586104", "GSM586105", "GSM586106", "GSM586099" ], "type": "time", "id": "GDS4374_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4374", "version": 1.0, "instances": "16", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4374.tab", "compression": "gz" } ], [ [ "GDS4375.tab" ], { "title": "Histone/protein deacetylase (HDAC) 6-deficient CD4+CD25+ T-regulatory cells", "description": "Analysis of CD4+CD25+ T-regulatory cells (Treg) from HDAC6-deficient C57BL6 mice. Foxp3+ Tregs are key to immune homeostasis and express multiple HDACs. Results provide insight into the role of the HDAC6 isoform in the suppressive functions of Foxp3+ Tregs.", "type": "Expression profiling by array", "pubmed_id": "21444725", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE27896", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4375", "description": "HDAC6 knock out", "sample_id": [ "GSM688863", "GSM688864", "GSM688865" ], "type": "genotype/variation", "id": "GDS4375_1" }, { "dataset_id": "GDS4375", "description": "wild type", "sample_id": [ "GSM688866", "GSM688867", "GSM688868" ], "type": "genotype/variation", "id": "GDS4375_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4375", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4375.tab", "compression": "gz" } ], [ [ "GDS4376.tab" ], { "title": "Ts65Dn aneuploidy model of Down syndrome: skeletal muscle", "description": "Analysis of soleus muscle, in the basal state, from five-month-old Ts65Dn Down syndrome (DS) males. Ts65Dn DS model exhibits muscle weakness in vivo. Results provide insight into the molecular mechanisms underlying DS-associated muscle dysfunction.", "type": "Expression profiling by array", "pubmed_id": "23115123", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE39159", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4376", "description": "Ts65Dn", "sample_id": [ "GSM957172", "GSM957173", "GSM957174", "GSM957175" ], "type": "strain", "id": "GDS4376_1" }, { "dataset_id": "GDS4376", "description": "control", "sample_id": [ "GSM957176", "GSM957177", "GSM957178", "GSM957179" ], "type": "strain", "id": "GDS4376_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4376", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4376.tab", "compression": "gz" } ], [ [ "GDS4377.tab" ], { "title": "CD43+/41+/235+ iPSC-derived progenitor cells with germ-line trisomy 21", "description": "Analysis of sorted CD43+/41+/235+ progenitors generated from trisomy 21 (T21) induced pluripotent stem cell (iPSC) lines. Down syndrome (DS, trisomy 21) affects many tissues, including blood, particularly during embryogenesis. Results provide insight into T21 effect on embryonic hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "23045704", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35561", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4377", "description": "Trisomy 21", "sample_id": [ "GSM870544", "GSM870545", "GSM870546" ], "type": "genotype/variation", "id": "GDS4377_1" }, { "dataset_id": "GDS4377", "description": "euploid", "sample_id": [ "GSM870541", "GSM870542", "GSM870543" ], "type": "genotype/variation", "id": "GDS4377_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4377", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4377.tab", "compression": "gz" } ], [ [ "GDS4378.tab" ], { "title": "Ozone effect on G-protein double-null mutant leaves: time course", "description": "Analysis of leaves from G-protein double mutant gpa1-4/agb1-2 plants with null mutations in the \u03b1- and \u03b2-subunits that were exposed to 125 ppb ozone for up to 2 days. Results provide insight into the role of G-protein signaling pathways in plant response to ozone exposure.", "type": "Expression profiling by array", "pubmed_id": "21988569", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE34667", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4378", "description": "G-protein null mutant", "sample_id": [ "GSM852929", "GSM852930", "GSM852931", "GSM852943", "GSM852944", "GSM852945", "GSM852932", "GSM852933", "GSM852934", "GSM852946", "GSM852947", "GSM852948", "GSM852949" ], "type": "genotype/variation", "id": "GDS4378_1" }, { "dataset_id": "GDS4378", "description": "control", "sample_id": [ "GSM852923", "GSM852924", "GSM852925", "GSM852935", "GSM852936", "GSM852937", "GSM852938", "GSM852926", "GSM852927", "GSM852928", "GSM852939", "GSM852940", "GSM852941", "GSM852942" ], "type": "genotype/variation", "id": "GDS4378_2" }, { "dataset_id": "GDS4378", "description": "ozone", "sample_id": [ "GSM852932", "GSM852933", "GSM852934", "GSM852946", "GSM852947", "GSM852948", "GSM852949", "GSM852926", "GSM852927", "GSM852928", "GSM852939", "GSM852940", "GSM852941", "GSM852942" ], "type": "agent", "id": "GDS4378_3" }, { "dataset_id": "GDS4378", "description": "clean-air", "sample_id": [ "GSM852929", "GSM852930", "GSM852931", "GSM852943", "GSM852944", "GSM852945", "GSM852923", "GSM852924", "GSM852925", "GSM852935", "GSM852936", "GSM852937", "GSM852938" ], "type": "agent", "id": "GDS4378_4" }, { "dataset_id": "GDS4378", "description": "3 hrs", "sample_id": [ "GSM852929", "GSM852930", "GSM852931", "GSM852932", "GSM852933", "GSM852934", "GSM852923", "GSM852924", "GSM852925", "GSM852926", "GSM852927", "GSM852928" ], "type": "time", "id": "GDS4378_5" }, { "dataset_id": "GDS4378", "description": "2 days", "sample_id": [ "GSM852943", "GSM852944", "GSM852945", "GSM852946", "GSM852947", "GSM852948", "GSM852949", "GSM852935", "GSM852936", "GSM852937", "GSM852938", "GSM852939", "GSM852940", "GSM852941", "GSM852942" ], "type": "time", "id": "GDS4378_6" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS4378", "version": 1.0, "instances": "27", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4378.tab", "compression": "gz" } ], [ [ "GDS4379.tab" ], { "title": "Colorectal cancer tumors", "description": "Analysis of primary colorectal cancer (CRC) tumors. CRC is a heterogeneous disease. Results provide insight into stratifying CRC tumor samples into subtypes and tailoring treatments for the CRC subtypes.", "type": "Expression profiling by array", "pubmed_id": "23272949", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "62", "value_type": "transformed count", "reference_series": "GSE35896", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4379", "description": "Adenocarcinoma", "sample_id": [ "GSM877144", "GSM877128" ], "type": "disease state", "id": "GDS4379_1" }, { "dataset_id": "GDS4379", "description": "Large Intestine, Adenocarcinoma in Villous Adenoma", "sample_id": [ "GSM877164" ], "type": "disease state", "id": "GDS4379_2" }, { "dataset_id": "GDS4379", "description": "Large Intestine, Adenocarcinoma", "sample_id": [ "GSM877150", "GSM877162", "GSM877127", "GSM877138", "GSM877140", "GSM877156", "GSM877130", "GSM877141", "GSM877142", "GSM877145", "GSM877151", "GSM877158", "GSM877173", "GSM877176", "GSM877179", "GSM877181", "GSM877185", "GSM877131", "GSM877147", "GSM877155", "GSM877159", "GSM877170", "GSM877186", "GSM877132", "GSM877143", "GSM877146", "GSM877148", "GSM877152", "GSM877168", "GSM877180", "GSM877126", "GSM877129", "GSM877133", "GSM877153", "GSM877169", "GSM877171", "GSM877174", "GSM877134", "GSM877135", "GSM877136", "GSM877137", "GSM877139", "GSM877149", "GSM877154", "GSM877157", "GSM877160", "GSM877161", "GSM877163", "GSM877166", "GSM877167", "GSM877175", "GSM877177", "GSM877184", "GSM877187", "GSM877188" ], "type": "disease state", "id": "GDS4379_3" }, { "dataset_id": "GDS4379", "description": "Large Intestine, Mucinous Adenocarcinoma", "sample_id": [ "GSM877165", "GSM877183" ], "type": "disease state", "id": "GDS4379_4" }, { "dataset_id": "GDS4379", "description": "Large Intestine, Villous Adenoma", "sample_id": [ "GSM877178" ], "type": "disease state", "id": "GDS4379_5" }, { "dataset_id": "GDS4379", "description": "Mucinous Adenocarcinoma", "sample_id": [ "GSM877182" ], "type": "disease state", "id": "GDS4379_6" }, { "dataset_id": "GDS4379", "description": "microsatellite.status: MSI", "sample_id": [ "GSM877127", "GSM877138", "GSM877140", "GSM877156", "GSM877162" ], "type": "genotype/variation", "id": "GDS4379_7" }, { "dataset_id": "GDS4379", "description": "microsatellite.status: MSS", "sample_id": [ "GSM877126", "GSM877128", "GSM877129", "GSM877130", "GSM877131", "GSM877132", "GSM877133", "GSM877134", "GSM877135", "GSM877136", "GSM877137", "GSM877139", "GSM877141", "GSM877142", "GSM877143", "GSM877144", "GSM877145", "GSM877146", "GSM877147", "GSM877148", "GSM877149", "GSM877151", "GSM877152", "GSM877153", "GSM877154", "GSM877155", "GSM877157", "GSM877158", "GSM877159", "GSM877160", "GSM877161", "GSM877163", "GSM877164", "GSM877165", "GSM877166", "GSM877167", "GSM877168", "GSM877169", "GSM877170", "GSM877171", "GSM877173", "GSM877174", "GSM877175", "GSM877176", "GSM877177", "GSM877178", "GSM877179", "GSM877180", "GSM877181", "GSM877182", "GSM877183", "GSM877184", "GSM877185", "GSM877186", "GSM877187", "GSM877188" ], "type": "genotype/variation", "id": "GDS4379_8" }, { "dataset_id": "GDS4379", "description": "microsatellite.status: ---", "sample_id": [ "GSM877150" ], "type": "genotype/variation", "id": "GDS4379_9" }, { "dataset_id": "GDS4379", "description": "subtype: 1.1", "sample_id": [ "GSM877130", "GSM877141", "GSM877142", "GSM877145", "GSM877151", "GSM877158", "GSM877165", "GSM877173", "GSM877176", "GSM877179", "GSM877181", "GSM877185" ], "type": "other", "id": "GDS4379_10" }, { "dataset_id": "GDS4379", "description": "subtype: 1.2", "sample_id": [ "GSM877162", "GSM877131", "GSM877144", "GSM877147", "GSM877155", "GSM877159", "GSM877170", "GSM877182", "GSM877186" ], "type": "other", "id": "GDS4379_11" }, { "dataset_id": "GDS4379", "description": "subtype: 1.3", "sample_id": [ "GSM877132", "GSM877143", "GSM877146", "GSM877148", "GSM877152", "GSM877168", "GSM877180" ], "type": "other", "id": "GDS4379_12" }, { "dataset_id": "GDS4379", "description": "subtype: 2.1", "sample_id": [ "GSM877127", "GSM877138", "GSM877140", "GSM877156", "GSM877126", "GSM877128", "GSM877129", "GSM877133", "GSM877153", "GSM877164", "GSM877169", "GSM877171", "GSM877174", "GSM877178", "GSM877183" ], "type": "other", "id": "GDS4379_13" }, { "dataset_id": "GDS4379", "description": "subtype: 2.2", "sample_id": [ "GSM877150", "GSM877134", "GSM877135", "GSM877136", "GSM877137", "GSM877139", "GSM877149", "GSM877154", "GSM877157", "GSM877160", "GSM877161", "GSM877163", "GSM877166", "GSM877167", "GSM877175", "GSM877177", "GSM877184", "GSM877187", "GSM877188" ], "type": "other", "id": "GDS4379_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4379", "version": 1.0, "instances": "62", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4379.tab", "compression": "gz" } ], [ [ "GDS438.tab" ], { "title": "Intraspecific variation - Canton S", "description": "Analysis of intraspecific expression differentiation shows that gene expression in males evolves more rapidly than in females. Canton S, Oregon R, Hikone R, a St. Louis-derived isofemale strain and four Zimbabwe-derived lines examined.", "type": "Expression profiling by array", "pubmed_id": "12907700", "platform": "GPL356", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6101", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE539", "order": "none", "update_date": "Nov 17 2003", "subsets": [ { "dataset_id": "GDS438", "description": "Canton S", "sample_id": [ "GSM7863" ], "type": "strain", "id": "GDS438_1" }, { "dataset_id": "GDS438", "description": "Hikone R", "sample_id": [ "GSM7875" ], "type": "strain", "id": "GDS438_2" }, { "dataset_id": "GDS438", "description": "Oregon R", "sample_id": [ "GSM7867" ], "type": "strain", "id": "GDS438_3" }, { "dataset_id": "GDS438", "description": "Zimbabwe53", "sample_id": [ "GSM7864" ], "type": "strain", "id": "GDS438_4" }, { "dataset_id": "GDS438", "description": "Zimbabwe29", "sample_id": [ "GSM7876" ], "type": "strain", "id": "GDS438_5" }, { "dataset_id": "GDS438", "description": "Zimbabwe30", "sample_id": [ "GSM7877" ], "type": "strain", "id": "GDS438_6" } ], "taxid": "7227", "genes": 5702, "aggregation_function": "mean", "name": "GDS438", "version": 1.0, "instances": "6", "variables": 5704, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS438.tab", "compression": "gz" } ], [ [ "GDS4380.tab" ], { "title": "High and low chromosomal instability phenotypes in stage II and III colorectal cancers", "description": "Analysis of specimens from consecutive stage II and stage III colorectal cancer (CRC) patients with high or low chromosomal instability (CIN) phenotype. CIN-high CRC showed poorer outcome than CIN-low CRC. Results provide insight into molecular biomarkers to distinguish between the CIN phenotypes.", "type": "Expression profiling by array", "pubmed_id": "22547595", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE30540", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4380", "description": "chromosomal instability-low", "sample_id": [ "GSM757714", "GSM757721", "GSM757722", "GSM757723", "GSM757730", "GSM757733", "GSM757735", "GSM757740", "GSM757741", "GSM757746" ], "type": "genotype/variation", "id": "GDS4380_1" }, { "dataset_id": "GDS4380", "description": "chromosomal instability-high", "sample_id": [ "GSM757713", "GSM757715", "GSM757716", "GSM757717", "GSM757718", "GSM757719", "GSM757720", "GSM757724", "GSM757725", "GSM757726", "GSM757727", "GSM757728", "GSM757729", "GSM757731", "GSM757732", "GSM757734", "GSM757736", "GSM757737", "GSM757738", "GSM757739", "GSM757742", "GSM757743", "GSM757744", "GSM757745", "GSM757747" ], "type": "genotype/variation", "id": "GDS4380_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4380", "version": 1.0, "instances": "35", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4380.tab", "compression": "gz" } ], [ [ "GDS4381.tab" ], { "title": "Patient-derived colorectal cancer explants", "description": "Analysis of patient-derived colorectal cancer explants (PDCCE), generated by direct transplantation of human colorectal cancer (CRC) tissues into NOD-SCID mice, and matched patient CRC primary tumors. Results provide insight into the degree to which PDCCEs represent their primary human counterparts.", "type": "Expression profiling by array", "pubmed_id": "22675560", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "transformed count", "reference_series": "GSE35144", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4381", "description": "human tumor", "sample_id": [ "GSM862444", "GSM862459", "GSM862441", "GSM862456", "GSM862445", "GSM862442", "GSM862449", "GSM862465", "GSM862454", "GSM862443", "GSM862457", "GSM862446", "GSM862458", "GSM862463", "GSM862460", "GSM862447", "GSM862461", "GSM862450", "GSM862462", "GSM862448", "GSM862455", "GSM862464", "GSM862467", "GSM862466", "GSM862468", "GSM862453", "GSM862451" ], "type": "tissue", "id": "GDS4381_1" }, { "dataset_id": "GDS4381", "description": "PDCCE tumor", "sample_id": [ "GSM862472", "GSM862481", "GSM862473", "GSM862470", "GSM862482", "GSM862484", "GSM862474", "GSM862471", "GSM862483", "GSM862498", "GSM862475", "GSM862478", "GSM862493", "GSM862476", "GSM862485", "GSM862486", "GSM862492", "GSM862487", "GSM862477", "GSM862494", "GSM862488", "GSM862469", "GSM862479", "GSM862489", "GSM862490", "GSM862491", "GSM862499", "GSM862500", "GSM862501", "GSM862502", "GSM862503", "GSM862504", "GSM862480", "GSM862497", "GSM862496", "GSM862495", "GSM862505" ], "type": "tissue", "id": "GDS4381_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4381", "version": 1.0, "instances": "64", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4381.tab", "compression": "gz" } ], [ [ "GDS4382.tab" ], { "title": "Colorectal cancer tumors", "description": "Analysis of paired colorectal cancer (CRC) tumors and adjacent non-cancerous tissues. Colorectal cancer is a worldwide public health problem. Results provide insight into the molecular mechanisms underlying CRC carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "22399497", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "transformed count", "reference_series": "GSE32323", "order": "none", "update_date": "Mar 07 2013", "subsets": [ { "dataset_id": "GDS4382", "description": "CRC tumor", "sample_id": [ "GSM800775", "GSM800774", "GSM800773", "GSM800772", "GSM800771", "GSM800770", "GSM800769", "GSM800768", "GSM800767", "GSM800766", "GSM800765", "GSM800764", "GSM800763", "GSM800762", "GSM800761", "GSM800760", "GSM800759" ], "type": "tissue", "id": "GDS4382_1" }, { "dataset_id": "GDS4382", "description": "normal tissue", "sample_id": [ "GSM800758", "GSM800757", "GSM800756", "GSM800755", "GSM800754", "GSM800753", "GSM800752", "GSM800751", "GSM800750", "GSM800749", "GSM800748", "GSM800747", "GSM800746", "GSM800745", "GSM800744", "GSM800743", "GSM800742" ], "type": "tissue", "id": "GDS4382_2" }, { "dataset_id": "GDS4382", "description": "6b", "sample_id": [ "GSM800759", "GSM800742" ], "type": "individual", "id": "GDS4382_3" }, { "dataset_id": "GDS4382", "description": "11b", "sample_id": [ "GSM800760", "GSM800743" ], "type": "individual", "id": "GDS4382_4" }, { "dataset_id": "GDS4382", "description": "24b", "sample_id": [ "GSM800761", "GSM800744" ], "type": "individual", "id": "GDS4382_5" }, { "dataset_id": "GDS4382", "description": "27b", "sample_id": [ "GSM800762", "GSM800745" ], "type": "individual", "id": "GDS4382_6" }, { "dataset_id": "GDS4382", "description": "28b", "sample_id": [ "GSM800763", "GSM800746" ], "type": "individual", "id": "GDS4382_7" }, { "dataset_id": "GDS4382", "description": "30b", "sample_id": [ "GSM800764", "GSM800747" ], "type": "individual", "id": "GDS4382_8" }, { "dataset_id": "GDS4382", "description": "31b", "sample_id": [ "GSM800765", "GSM800748" ], "type": "individual", "id": "GDS4382_9" }, { "dataset_id": "GDS4382", "description": "32b", "sample_id": [ "GSM800766", "GSM800749" ], "type": "individual", "id": "GDS4382_10" }, { "dataset_id": "GDS4382", "description": "33b", "sample_id": [ "GSM800767", "GSM800750" ], "type": "individual", "id": "GDS4382_11" }, { "dataset_id": "GDS4382", "description": "35b", "sample_id": [ "GSM800768", "GSM800751" ], "type": "individual", "id": "GDS4382_12" }, { "dataset_id": "GDS4382", "description": "36b", "sample_id": [ "GSM800769", "GSM800752" ], "type": "individual", "id": "GDS4382_13" }, { "dataset_id": "GDS4382", "description": "38b", "sample_id": [ "GSM800770", "GSM800753" ], "type": "individual", "id": "GDS4382_14" }, { "dataset_id": "GDS4382", "description": "41b", "sample_id": [ "GSM800771", "GSM800754" ], "type": "individual", "id": "GDS4382_15" }, { "dataset_id": "GDS4382", "description": "42b", "sample_id": [ "GSM800772", "GSM800755" ], "type": "individual", "id": "GDS4382_16" }, { "dataset_id": "GDS4382", "description": "44b", "sample_id": [ "GSM800773", "GSM800756" ], "type": "individual", "id": "GDS4382_17" }, { "dataset_id": "GDS4382", "description": "45b", "sample_id": [ "GSM800774", "GSM800757" ], "type": "individual", "id": "GDS4382_18" }, { "dataset_id": "GDS4382", "description": "47b", "sample_id": [ "GSM800775", "GSM800758" ], "type": "individual", "id": "GDS4382_19" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4382", "version": 1.0, "instances": "34", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4382.tab", "compression": "gz" } ], [ [ "GDS4383.tab" ], { "title": "Saracatinib-sensitive versus -resistant, PIK3CA mutant colorectal cancer xenografts", "description": "Analysis of patient-derived colorectal cancer (CRC) xenografts with a PIK3CA mutation with enhanced sensitivity to Src inhibitor saracatinib. Dysregulation of Src and PI3K (phosphoinositide 3-kinase) signaling pathways is common in CRC. Results provide insight into CRC model response to saracatinib.", "type": "Expression profiling by array", "pubmed_id": "22553375", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE36006", "order": "none", "update_date": "Feb 20 2013", "subsets": [ { "dataset_id": "GDS4383", "description": "saracatinib sensitive PIK3CA mutant", "sample_id": [ "GSM879237", "GSM879238" ], "type": "genotype/variation", "id": "GDS4383_1" }, { "dataset_id": "GDS4383", "description": "saracatinib resistant PIK3CA mutant", "sample_id": [ "GSM879239", "GSM879240" ], "type": "genotype/variation", "id": "GDS4383_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4383", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4383.tab", "compression": "gz" } ], [ [ "GDS4384.tab" ], { "title": "p53 mutations in microsatellite-stable, stage III colorectal cancer", "description": "Analysis of Stage III CRCs exhibiting microsatellite-stable (MSS) and mutant p53 phenotypic features. p53 mutations are associated with higher Stage III MSS CRC mortality than p53 wild-type phenotypes. Results provide further insight into the prognostic value of p53 mutations in Stage III MSS CRCs.", "type": "Expression profiling by array", "pubmed_id": "22276141", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE27157", "order": "none", "update_date": "Feb 18 2013", "subsets": [ { "dataset_id": "GDS4384", "description": "wild type", "sample_id": [ "GSM671377", "GSM671378", "GSM671379", "GSM671380", "GSM671381" ], "type": "genotype/variation", "id": "GDS4384_1" }, { "dataset_id": "GDS4384", "description": "p53 mutant", "sample_id": [ "GSM671382", "GSM671383", "GSM671384", "GSM671385", "GSM671386" ], "type": "genotype/variation", "id": "GDS4384_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4384", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4384.tab", "compression": "gz" } ], [ [ "GDS4385.tab" ], { "title": "CD133-positive and CD133-negative colon cancer cells", "description": "Analysis of CD133-positive and CD133-negative colorectal cancer cells and CAFs isolated from the same stage II patient specimen. CD133+ colon cancer cells exhibit enhanced tumorigenicity over CD133- cells. Results provide insight into molecular basis of the enhanced tumorigenicity of CD133+ cells.", "type": "Expression profiling by array", "pubmed_id": "22157717", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE34053", "order": "none", "update_date": "Feb 14 2013", "subsets": [ { "dataset_id": "GDS4385", "description": "Carcinoma associated fibroblasts", "sample_id": [ "GSM841026", "GSM841027", "GSM841028" ], "type": "cell type", "id": "GDS4385_1" }, { "dataset_id": "GDS4385", "description": "CD133+ colorectal cancer cells", "sample_id": [ "GSM841020", "GSM841022", "GSM841024" ], "type": "cell type", "id": "GDS4385_2" }, { "dataset_id": "GDS4385", "description": "CD133- colorectal cancer cells", "sample_id": [ "GSM841021", "GSM841023", "GSM841025" ], "type": "cell type", "id": "GDS4385_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4385", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4385.tab", "compression": "gz" } ], [ [ "GDS4386.tab" ], { "title": "Ls174T colon cancer cell line response to Wnt signaling inhibition", "description": "Analysis of Ls174T colon cancer cells following doxycyclin-induction of a dominant-negative Tcf4 transgene, or a shRNA against \u03b2-catenin, to block the Wnt signal transduction pathway. Results provide insight into molecular mechanisms downstream of a defined signal transduction pathway.", "type": "Expression profiling by array", "pubmed_id": "21914722", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE18560", "order": "none", "update_date": "Feb 15 2013", "subsets": [ { "dataset_id": "GDS4386", "description": "Ls174T-pTER-\u03b2-catenin", "sample_id": [ "GSM461942", "GSM461947", "GSM461949", "GSM461946", "GSM461948", "GSM461950" ], "type": "cell line", "id": "GDS4386_1" }, { "dataset_id": "GDS4386", "description": "Ls174T-L8", "sample_id": [ "GSM461944", "GSM461951", "GSM461953", "GSM461943", "GSM461945", "GSM461952" ], "type": "cell line", "id": "GDS4386_2" }, { "dataset_id": "GDS4386", "description": "\u03b2-catenin shRNA, uninduced", "sample_id": [ "GSM461942", "GSM461947", "GSM461949" ], "type": "protocol", "id": "GDS4386_3" }, { "dataset_id": "GDS4386", "description": "\u03b2-catenin shRNA, induced", "sample_id": [ "GSM461946", "GSM461948", "GSM461950" ], "type": "protocol", "id": "GDS4386_4" }, { "dataset_id": "GDS4386", "description": "dominant-negative Tcf4, uninduced", "sample_id": [ "GSM461944", "GSM461951", "GSM461953" ], "type": "protocol", "id": "GDS4386_5" }, { "dataset_id": "GDS4386", "description": "dominant-negative Tcf4, induced", "sample_id": [ "GSM461943", "GSM461945", "GSM461952" ], "type": "protocol", "id": "GDS4386_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4386", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4386.tab", "compression": "gz" } ], [ [ "GDS4387.tab" ], { "title": "Hepatitis B virus (HBV)-associated acute liver failure (ALF) patients: liver explant", "description": "Analysis of explanted livers of 4 patients with HBV-associated ALF who underwent liver transplantation. Liver has inherent regenerative capacity via hepatic stem/progenitor cells (HSPC) when hepatic loss is massive. Results provide insight into role of HSPC in liver regeneration associated with ALF.", "type": "Expression profiling by array", "pubmed_id": "23185381", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE38941", "order": "none", "update_date": "Feb 16 2013", "subsets": [ { "dataset_id": "GDS4387", "description": "HBV-associated ALF", "sample_id": [ "GSM952521", "GSM952522", "GSM952523", "GSM952524", "GSM952525", "GSM952526", "GSM952527", "GSM952528", "GSM952529", "GSM952530", "GSM952531", "GSM952532", "GSM952533", "GSM952534", "GSM952535", "GSM952536", "GSM952537" ], "type": "disease state", "id": "GDS4387_1" }, { "dataset_id": "GDS4387", "description": "normal", "sample_id": [ "GSM952511", "GSM952512", "GSM952513", "GSM952514", "GSM952515", "GSM952516", "GSM952517", "GSM952518", "GSM952519", "GSM952520" ], "type": "disease state", "id": "GDS4387_2" }, { "dataset_id": "GDS4387", "description": "241", "sample_id": [ "GSM952537", "GSM952536", "GSM952535", "GSM952534" ], "type": "individual", "id": "GDS4387_3" }, { "dataset_id": "GDS4387", "description": "219", "sample_id": [ "GSM952533", "GSM952532", "GSM952531", "GSM952530", "GSM952529" ], "type": "individual", "id": "GDS4387_4" }, { "dataset_id": "GDS4387", "description": "32", "sample_id": [ "GSM952528", "GSM952527", "GSM952526", "GSM952525" ], "type": "individual", "id": "GDS4387_5" }, { "dataset_id": "GDS4387", "description": "31", "sample_id": [ "GSM952524", "GSM952523", "GSM952522", "GSM952521" ], "type": "individual", "id": "GDS4387_6" }, { "dataset_id": "GDS4387", "description": "112", "sample_id": [ "GSM952520" ], "type": "individual", "id": "GDS4387_7" }, { "dataset_id": "GDS4387", "description": "101", "sample_id": [ "GSM952519" ], "type": "individual", "id": "GDS4387_8" }, { "dataset_id": "GDS4387", "description": "62", "sample_id": [ "GSM952518" ], "type": "individual", "id": "GDS4387_9" }, { "dataset_id": "GDS4387", "description": "60", "sample_id": [ "GSM952517" ], "type": "individual", "id": "GDS4387_10" }, { "dataset_id": "GDS4387", "description": "37", "sample_id": [ "GSM952516" ], "type": "individual", "id": "GDS4387_11" }, { "dataset_id": "GDS4387", "description": "29", "sample_id": [ "GSM952515" ], "type": "individual", "id": "GDS4387_12" }, { "dataset_id": "GDS4387", "description": "20", "sample_id": [ "GSM952514" ], "type": "individual", "id": "GDS4387_13" }, { "dataset_id": "GDS4387", "description": "18", "sample_id": [ "GSM952513" ], "type": "individual", "id": "GDS4387_14" }, { "dataset_id": "GDS4387", "description": "16", "sample_id": [ "GSM952512" ], "type": "individual", "id": "GDS4387_15" }, { "dataset_id": "GDS4387", "description": "8", "sample_id": [ "GSM952511" ], "type": "individual", "id": "GDS4387_16" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4387", "version": 1.0, "instances": "27", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4387.tab", "compression": "gz" } ], [ [ "GDS4388.tab" ], { "title": "Leukemia inhibitory factor effect on Sin3a-silenced MCF7 breast cancer cell line", "description": "Analysis of SIN3 transcription regulator homolog A (Sin3a)-depleted MCF7 cells stimulated with LIF cytokine to activate signal transducer and activator of transcription 3 (STAT3). STAT3 transcription factor is a potent oncogene. Results provide insight into role of Sin3a in mediating STAT3 activity.", "type": "Expression profiling by array", "pubmed_id": "22783022", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE35696", "order": "none", "update_date": "Feb 18 2013", "subsets": [ { "dataset_id": "GDS4388", "description": "SIN3A knockdown", "sample_id": [ "GSM873562", "GSM873558", "GSM873555", "GSM873563", "GSM873559" ], "type": "genotype/variation", "id": "GDS4388_1" }, { "dataset_id": "GDS4388", "description": "control", "sample_id": [ "GSM873560", "GSM873556", "GSM873553", "GSM873561", "GSM873557", "GSM873554" ], "type": "genotype/variation", "id": "GDS4388_2" }, { "dataset_id": "GDS4388", "description": "LIF", "sample_id": [ "GSM873554", "GSM873557", "GSM873561", "GSM873559", "GSM873563" ], "type": "agent", "id": "GDS4388_3" }, { "dataset_id": "GDS4388", "description": "not stimulated", "sample_id": [ "GSM873553", "GSM873556", "GSM873560", "GSM873555", "GSM873558", "GSM873562" ], "type": "agent", "id": "GDS4388_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4388", "version": 1.0, "instances": "11", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4388.tab", "compression": "gz" } ], [ [ "GDS4389.tab" ], { "title": "Alcoholic hepatitis", "description": "Analysis of alcoholic hepatitis (AH) livers. AH is a severe form of alcoholic liver disease characterized by hepatocellular damage, steatosis and pericellular fibrosis. Results provide insight into the molecular mechanisms underlying AH pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22637703", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE28619", "order": "none", "update_date": "Feb 18 2013", "subsets": [ { "dataset_id": "GDS4389", "description": "control", "sample_id": [ "GSM709348", "GSM709349", "GSM709350", "GSM709351", "GSM709352", "GSM709353", "GSM709354" ], "type": "disease state", "id": "GDS4389_1" }, { "dataset_id": "GDS4389", "description": "alcoholic hepatitis", "sample_id": [ "GSM709355", "GSM709356", "GSM709357", "GSM709358", "GSM709359", "GSM709360", "GSM709361", "GSM709362", "GSM709363", "GSM709364", "GSM709365", "GSM709366", "GSM709367", "GSM709368", "GSM709369" ], "type": "disease state", "id": "GDS4389_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4389", "version": 1.0, "instances": "22", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4389.tab", "compression": "gz" } ], [ [ "GDS439.tab" ], { "title": "Intraspecific variation - Canton S (dye-swap)", "description": "Analysis of intraspecific expression differentiation shows that gene expression in males evolves more rapidly than in females. Canton S, Oregon R, Hikone R, a St. Louis-derived isofemale strain and four Zimbabwe-derived lines examined.", "type": "Expression profiling by array", "pubmed_id": "12907700", "platform": "GPL356", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6101", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE539", "order": "none", "update_date": "Nov 17 2003", "subsets": [ { "dataset_id": "GDS439", "description": "Canton S", "sample_id": [ "GSM7863" ], "type": "strain", "id": "GDS439_1" }, { "dataset_id": "GDS439", "description": "Oregon R", "sample_id": [ "GSM7868" ], "type": "strain", "id": "GDS439_2" }, { "dataset_id": "GDS439", "description": "Hikone R", "sample_id": [ "GSM7874" ], "type": "strain", "id": "GDS439_3" }, { "dataset_id": "GDS439", "description": "Zimbabwe53", "sample_id": [ "GSM7865" ], "type": "strain", "id": "GDS439_4" }, { "dataset_id": "GDS439", "description": "Zimbabwe29", "sample_id": [ "GSM7873" ], "type": "strain", "id": "GDS439_5" }, { "dataset_id": "GDS439", "description": "Zimbabwe2", "sample_id": [ "GSM7880" ], "type": "strain", "id": "GDS439_6" }, { "dataset_id": "GDS439", "description": "Zimbabwe30", "sample_id": [ "GSM7884" ], "type": "strain", "id": "GDS439_7" } ], "taxid": "7227", "genes": 5702, "aggregation_function": "mean", "name": "GDS439", "version": 1.0, "instances": "7", "variables": 5704, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS439.tab", "compression": "gz" } ], [ [ "GDS4390.tab" ], { "title": "Primary hepatocyte response to interferon-\u03b1 or interleukin 28B: time course", "description": "Analysis of primary hepatocytes up to 24 hrs after treatment with cytokines: interferon (IFN)-\u03b1 or interleukin 28B (IL28B, a type III IFN). Members of type III IFN system possess antiviral activities against Hepatitis C Virus (HCV). Results provide insight into role of III IFNs in HCV infection.", "type": "Expression profiling by array", "pubmed_id": "22248663", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE31193", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4390", "description": "untreated", "sample_id": [ "GSM773317", "GSM773318", "GSM773319" ], "type": "agent", "id": "GDS4390_1" }, { "dataset_id": "GDS4390", "description": "interferon-\u03b1", "sample_id": [ "GSM773320", "GSM773321", "GSM773322", "GSM773323", "GSM773324", "GSM773325" ], "type": "agent", "id": "GDS4390_2" }, { "dataset_id": "GDS4390", "description": "interleukin 28B", "sample_id": [ "GSM773326", "GSM773327", "GSM773328", "GSM773329", "GSM773330", "GSM773331" ], "type": "agent", "id": "GDS4390_3" }, { "dataset_id": "GDS4390", "description": "6 hrs", "sample_id": [ "GSM773329", "GSM773330", "GSM773331", "GSM773323", "GSM773324", "GSM773325" ], "type": "time", "id": "GDS4390_4" }, { "dataset_id": "GDS4390", "description": "24 hrs", "sample_id": [ "GSM773320", "GSM773321", "GSM773322", "GSM773326", "GSM773327", "GSM773328" ], "type": "time", "id": "GDS4390_5" }, { "dataset_id": "GDS4390", "description": "control", "sample_id": [ "GSM773317", "GSM773318", "GSM773319" ], "type": "time", "id": "GDS4390_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4390", "version": 1.0, "instances": "15", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4390.tab", "compression": "gz" } ], [ [ "GDS4391.tab" ], { "title": "Ribavirin effect on uninfected hepatoma Huh7.5.1 cells", "description": "Analysis of uninfected hepatoma Huh7.5.1 cells treated with ribavirin. In the combination treatment for hepatitis C virus (HCV), ribavirin potentiates the anti-HCV effect of pegylated interferon (PEG-IFN). Results provide insight into the molecular mechanisms underlying ribavirin action.", "type": "Expression profiling by array", "pubmed_id": "21254160", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23031", "order": "none", "update_date": "Feb 18 2013", "subsets": [ { "dataset_id": "GDS4391", "description": "control", "sample_id": [ "GSM568463", "GSM568464", "GSM568465" ], "type": "agent", "id": "GDS4391_1" }, { "dataset_id": "GDS4391", "description": "ribavirin", "sample_id": [ "GSM568466", "GSM568467", "GSM568468" ], "type": "agent", "id": "GDS4391_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4391", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4391.tab", "compression": "gz" } ], [ [ "GDS4392.tab" ], { "title": "Hepatitis C virus permissive cell lines Huh7.5 and HRP1 and non-permissive parent cell line Huh7", "description": "Analysis of hepatocyte cell line Huh7, non-permissive to hepatitis C virus (HCV) replication, and permissive cell lines Huh7.5 and HRP1. Results provide insight into host factors lost in cells permissive for HCV replication.", "type": "Expression profiling by array", "pubmed_id": "21767813", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE25156", "order": "none", "update_date": "Feb 18 2013", "subsets": [ { "dataset_id": "GDS4392", "description": "Huh7", "sample_id": [ "GSM618131", "GSM618133" ], "type": "cell line", "id": "GDS4392_1" }, { "dataset_id": "GDS4392", "description": "Huh7.5", "sample_id": [ "GSM618134" ], "type": "cell line", "id": "GDS4392_2" }, { "dataset_id": "GDS4392", "description": "HRP1", "sample_id": [ "GSM618132" ], "type": "cell line", "id": "GDS4392_3" }, { "dataset_id": "GDS4392", "description": "HCV non-permissive", "sample_id": [ "GSM618133", "GSM618131" ], "type": "genotype/variation", "id": "GDS4392_4" }, { "dataset_id": "GDS4392", "description": "HCV permissive", "sample_id": [ "GSM618132", "GSM618134" ], "type": "genotype/variation", "id": "GDS4392_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4392", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4392.tab", "compression": "gz" } ], [ [ "GDS4393.tab" ], { "title": "Unresectable colorectal cancer primary or metastatic lesions: training set", "description": "Analysis of primary or metastatic lesions from patients with unresectable colorectal cancer (CRC) prior to FOLFOX6 therapy (oxaliplatin, 5-fluorouracil, leucovorin regimen). Results provide insight into molecular signatures that predict responders to FOLFOX therapy for unresectable CRC.", "type": "Expression profiling by array", "pubmed_id": "22095227", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE28702", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4393", "description": "metastatic lesion", "sample_id": [ "GSM710801", "GSM710813", "GSM710814", "GSM710815", "GSM710816", "GSM710817", "GSM710818", "GSM710819", "GSM710820", "GSM710828", "GSM710829", "GSM710839", "GSM710841", "GSM710843", "GSM710845", "GSM710846", "GSM710849", "GSM710853", "GSM710855", "GSM710858", "GSM710860" ], "type": "specimen", "id": "GDS4393_1" }, { "dataset_id": "GDS4393", "description": "primary lesion", "sample_id": [ "GSM710802", "GSM710803", "GSM710804", "GSM710805", "GSM710806", "GSM710807", "GSM710808", "GSM710809", "GSM710810", "GSM710811", "GSM710812", "GSM710821", "GSM710822", "GSM710823", "GSM710824", "GSM710825", "GSM710826", "GSM710827", "GSM710830", "GSM710831", "GSM710832", "GSM710833", "GSM710834", "GSM710835", "GSM710836", "GSM710837", "GSM710862", "GSM710863", "GSM710865", "GSM710867", "GSM710869", "GSM710871", "GSM710873" ], "type": "specimen", "id": "GDS4393_2" }, { "dataset_id": "GDS4393", "description": "FOLFOX non-responder", "sample_id": [ "GSM710830", "GSM710831", "GSM710832", "GSM710833", "GSM710834", "GSM710835", "GSM710836", "GSM710837", "GSM710839", "GSM710841", "GSM710843", "GSM710845", "GSM710846", "GSM710849", "GSM710853", "GSM710855", "GSM710858", "GSM710860", "GSM710862", "GSM710863", "GSM710865", "GSM710867", "GSM710869", "GSM710871", "GSM710873", "GSM710828", "GSM710829" ], "type": "individual", "id": "GDS4393_3" }, { "dataset_id": "GDS4393", "description": "FOLFOX responder", "sample_id": [ "GSM710802", "GSM710803", "GSM710804", "GSM710805", "GSM710806", "GSM710807", "GSM710808", "GSM710809", "GSM710810", "GSM710811", "GSM710812", "GSM710813", "GSM710814", "GSM710815", "GSM710816", "GSM710817", "GSM710818", "GSM710819", "GSM710820", "GSM710821", "GSM710822", "GSM710823", "GSM710824", "GSM710825", "GSM710826", "GSM710827", "GSM710801" ], "type": "individual", "id": "GDS4393_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4393", "version": 1.0, "instances": "54", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4393.tab", "compression": "gz" } ], [ [ "GDS4394.tab" ], { "title": "Niemann-Pick Type C disease brain: time course", "description": "Analysis of brain across 6 age groups of Npc1\u2212/\u2212 Balb/c females with Niemann-Pick Type C (NPC) disease. NPC is a neurodegenerative, lysosomal disorder caused by Npc1 or Npc2 gene dysfunction. Results provide insight into the molecular mechanisms underlying NPC progression.", "type": "Expression profiling by array", "pubmed_id": "23094108", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE39621", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4394", "description": "Npc-/-", "sample_id": [ "GSM973242", "GSM973243", "GSM973246", "GSM973247", "GSM973250", "GSM973251", "GSM973256", "GSM973257", "GSM973260", "GSM973263", "GSM973264" ], "type": "genotype/variation", "id": "GDS4394_1" }, { "dataset_id": "GDS4394", "description": "Npc+/- control", "sample_id": [ "GSM973240", "GSM973241", "GSM973244", "GSM973245", "GSM973248", "GSM973249", "GSM973254", "GSM973255", "GSM973259", "GSM973261", "GSM973262" ], "type": "genotype/variation", "id": "GDS4394_2" }, { "dataset_id": "GDS4394", "description": "Npc+/+ control", "sample_id": [ "GSM973238", "GSM973239", "GSM973252", "GSM973253", "GSM973258" ], "type": "genotype/variation", "id": "GDS4394_3" }, { "dataset_id": "GDS4394", "description": "day 20", "sample_id": [ "GSM973238", "GSM973240", "GSM973242" ], "type": "age", "id": "GDS4394_4" }, { "dataset_id": "GDS4394", "description": "day 25", "sample_id": [ "GSM973239", "GSM973241", "GSM973243" ], "type": "age", "id": "GDS4394_5" }, { "dataset_id": "GDS4394", "description": "day 37", "sample_id": [ "GSM973244", "GSM973246" ], "type": "age", "id": "GDS4394_6" }, { "dataset_id": "GDS4394", "description": "day 40", "sample_id": [ "GSM973245", "GSM973247" ], "type": "age", "id": "GDS4394_7" }, { "dataset_id": "GDS4394", "description": "day 54", "sample_id": [ "GSM973248", "GSM973250" ], "type": "age", "id": "GDS4394_8" }, { "dataset_id": "GDS4394", "description": "day 55", "sample_id": [ "GSM973249", "GSM973251" ], "type": "age", "id": "GDS4394_9" }, { "dataset_id": "GDS4394", "description": "day 59", "sample_id": [ "GSM973254", "GSM973256" ], "type": "age", "id": "GDS4394_10" }, { "dataset_id": "GDS4394", "description": "day 60", "sample_id": [ "GSM973252", "GSM973253" ], "type": "age", "id": "GDS4394_11" }, { "dataset_id": "GDS4394", "description": "day 62", "sample_id": [ "GSM973255", "GSM973257" ], "type": "age", "id": "GDS4394_12" }, { "dataset_id": "GDS4394", "description": "day 67", "sample_id": [ "GSM973258", "GSM973259", "GSM973260" ], "type": "age", "id": "GDS4394_13" }, { "dataset_id": "GDS4394", "description": "day 81", "sample_id": [ "GSM973261" ], "type": "age", "id": "GDS4394_14" }, { "dataset_id": "GDS4394", "description": "day 82", "sample_id": [ "GSM973262", "GSM973263" ], "type": "age", "id": "GDS4394_15" }, { "dataset_id": "GDS4394", "description": "day 84", "sample_id": [ "GSM973264" ], "type": "age", "id": "GDS4394_16" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4394", "version": 1.0, "instances": "27", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4394.tab", "compression": "gz" } ], [ [ "GDS4395.tab" ], { "title": "External beam radiation therapy effect on prostate cancer patients: peripheral white blood cells", "description": "Analysis of peripheral blood from men with non-metastatic prostate cancer (PC) on days 1, 7, 14, 21, 42 of external beam radiation therapy (EBRT), and at 30 days post-EBRT. Fatigue is a common side effect of EBRT. Results provide insight into molecular basis of fatigue in men with PC during EBRT.", "type": "Expression profiling by array", "pubmed_id": "23022913", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "80", "value_type": "count", "reference_series": "GSE30174", "order": "none", "update_date": "Mar 07 2013", "subsets": [ { "dataset_id": "GDS4395", "description": "untreated", "sample_id": [ "GSM753572", "GSM753580", "GSM753588", "GSM753596", "GSM753604", "GSM753612", "GSM753620", "GSM753628", "GSM753636", "GSM753644", "GSM753571", "GSM753579", "GSM753587", "GSM753595", "GSM753603", "GSM753611", "GSM753619", "GSM753627", "GSM753635", "GSM753643" ], "type": "protocol", "id": "GDS4395_1" }, { "dataset_id": "GDS4395", "description": "external beam radiation therapy", "sample_id": [ "GSM753573", "GSM753581", "GSM753589", "GSM753597", "GSM753605", "GSM753613", "GSM753621", "GSM753629", "GSM753637", "GSM753645", "GSM753574", "GSM753582", "GSM753590", "GSM753598", "GSM753606", "GSM753614", "GSM753622", "GSM753630", "GSM753638", "GSM753646", "GSM753575", "GSM753583", "GSM753591", "GSM753599", "GSM753607", "GSM753615", "GSM753623", "GSM753631", "GSM753639", "GSM753647", "GSM753576", "GSM753584", "GSM753592", "GSM753600", "GSM753608", "GSM753616", "GSM753624", "GSM753632", "GSM753640", "GSM753648", "GSM753577", "GSM753585", "GSM753593", "GSM753601", "GSM753609", "GSM753617", "GSM753625", "GSM753633", "GSM753641", "GSM753649", "GSM753578", "GSM753586", "GSM753594", "GSM753602", "GSM753610", "GSM753618", "GSM753626", "GSM753634", "GSM753642", "GSM753650" ], "type": "protocol", "id": "GDS4395_2" }, { "dataset_id": "GDS4395", "description": "control", "sample_id": [ "GSM753572", "GSM753580", "GSM753588", "GSM753596", "GSM753604", "GSM753612", "GSM753620", "GSM753628", "GSM753636", "GSM753644" ], "type": "time", "id": "GDS4395_3" }, { "dataset_id": "GDS4395", "description": "baseline", "sample_id": [ "GSM753571", "GSM753579", "GSM753587", "GSM753595", "GSM753603", "GSM753611", "GSM753619", "GSM753627", "GSM753635", "GSM753643" ], "type": "time", "id": "GDS4395_4" }, { "dataset_id": "GDS4395", "description": "day 1", "sample_id": [ "GSM753573", "GSM753581", "GSM753589", "GSM753597", "GSM753605", "GSM753613", "GSM753621", "GSM753629", "GSM753637", "GSM753645" ], "type": "time", "id": "GDS4395_5" }, { "dataset_id": "GDS4395", "description": "day 7", "sample_id": [ "GSM753574", "GSM753582", "GSM753590", "GSM753598", "GSM753606", "GSM753614", "GSM753622", "GSM753630", "GSM753638", "GSM753646" ], "type": "time", "id": "GDS4395_6" }, { "dataset_id": "GDS4395", "description": "day 14", "sample_id": [ "GSM753575", "GSM753583", "GSM753591", "GSM753599", "GSM753607", "GSM753615", "GSM753623", "GSM753631", "GSM753639", "GSM753647" ], "type": "time", "id": "GDS4395_7" }, { "dataset_id": "GDS4395", "description": "day 21", "sample_id": [ "GSM753576", "GSM753584", "GSM753592", "GSM753600", "GSM753608", "GSM753616", "GSM753624", "GSM753632", "GSM753640", "GSM753648" ], "type": "time", "id": "GDS4395_8" }, { "dataset_id": "GDS4395", "description": "day 42", "sample_id": [ "GSM753577", "GSM753585", "GSM753593", "GSM753601", "GSM753609", "GSM753617", "GSM753625", "GSM753633", "GSM753641", "GSM753649" ], "type": "time", "id": "GDS4395_9" }, { "dataset_id": "GDS4395", "description": "day 72 (30d post EBRT)", "sample_id": [ "GSM753578", "GSM753586", "GSM753594", "GSM753602", "GSM753610", "GSM753618", "GSM753626", "GSM753634", "GSM753642", "GSM753650" ], "type": "time", "id": "GDS4395_10" }, { "dataset_id": "GDS4395", "description": "2", "sample_id": [ "GSM753603", "GSM753605", "GSM753607", "GSM753608", "GSM753609", "GSM753606", "GSM753610" ], "type": "individual", "id": "GDS4395_11" }, { "dataset_id": "GDS4395", "description": "4", "sample_id": [ "GSM753619", "GSM753621", "GSM753623", "GSM753624", "GSM753625", "GSM753622", "GSM753626" ], "type": "individual", "id": "GDS4395_12" }, { "dataset_id": "GDS4395", "description": "5", "sample_id": [ "GSM753627", "GSM753629", "GSM753631", "GSM753632", "GSM753633", "GSM753630", "GSM753634" ], "type": "individual", "id": "GDS4395_13" }, { "dataset_id": "GDS4395", "description": "6", "sample_id": [ "GSM753635", "GSM753637", "GSM753639", "GSM753640", "GSM753641", "GSM753638", "GSM753642" ], "type": "individual", "id": "GDS4395_14" }, { "dataset_id": "GDS4395", "description": "8", "sample_id": [ "GSM753643", "GSM753645", "GSM753647", "GSM753648", "GSM753649", "GSM753646", "GSM753650" ], "type": "individual", "id": "GDS4395_15" }, { "dataset_id": "GDS4395", "description": "10", "sample_id": [ "GSM753571", "GSM753573", "GSM753575", "GSM753576", "GSM753577", "GSM753574", "GSM753578" ], "type": "individual", "id": "GDS4395_16" }, { "dataset_id": "GDS4395", "description": "11", "sample_id": [ "GSM753579", "GSM753581", "GSM753583", "GSM753584", "GSM753585", "GSM753582", "GSM753586" ], "type": "individual", "id": "GDS4395_17" }, { "dataset_id": "GDS4395", "description": "13", "sample_id": [ "GSM753587", "GSM753589", "GSM753591", "GSM753592", "GSM753593", "GSM753590", "GSM753594" ], "type": "individual", "id": "GDS4395_18" }, { "dataset_id": "GDS4395", "description": "P1", "sample_id": [ "GSM753595", "GSM753597", "GSM753599", "GSM753600", "GSM753601", "GSM753598", "GSM753602" ], "type": "individual", "id": "GDS4395_19" }, { "dataset_id": "GDS4395", "description": "P2", "sample_id": [ "GSM753611", "GSM753613", "GSM753615", "GSM753616", "GSM753617", "GSM753614", "GSM753618" ], "type": "individual", "id": "GDS4395_20" }, { "dataset_id": "GDS4395", "description": "matched healthy control 2", "sample_id": [ "GSM753604" ], "type": "individual", "id": "GDS4395_21" }, { "dataset_id": "GDS4395", "description": "matched healthy control 4", "sample_id": [ "GSM753620" ], "type": "individual", "id": "GDS4395_22" }, { "dataset_id": "GDS4395", "description": "matched healthy control 5", "sample_id": [ "GSM753628" ], "type": "individual", "id": "GDS4395_23" }, { "dataset_id": "GDS4395", "description": "matched healthy control 6", "sample_id": [ "GSM753636" ], "type": "individual", "id": "GDS4395_24" }, { "dataset_id": "GDS4395", "description": "matched healthy control 8", "sample_id": [ "GSM753644" ], "type": "individual", "id": "GDS4395_25" }, { "dataset_id": "GDS4395", "description": "matched healthy control 10", "sample_id": [ "GSM753572" ], "type": "individual", "id": "GDS4395_26" }, { "dataset_id": "GDS4395", "description": "matched healthy control 11", "sample_id": [ "GSM753580" ], "type": "individual", "id": "GDS4395_27" }, { "dataset_id": "GDS4395", "description": "matched healthy control 13", "sample_id": [ "GSM753588" ], "type": "individual", "id": "GDS4395_28" }, { "dataset_id": "GDS4395", "description": "matched healthy control P1", "sample_id": [ "GSM753596" ], "type": "individual", "id": "GDS4395_29" }, { "dataset_id": "GDS4395", "description": "matched healthy control P2", "sample_id": [ "GSM753612" ], "type": "individual", "id": "GDS4395_30" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4395", "version": 1.0, "instances": "80", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4395.tab", "compression": "gz" } ], [ [ "GDS4396.tab" ], { "title": "Unresectable colorectal cancer primary or metastatic lesions: test set", "description": "Analysis of primary or metastatic lesions from patients with unresectable colorectal cancer (CRC) prior to FOLFOX6 therapy (oxaliplatin, 5-fluorouracil, leucovorin regimen). Results provide insight into molecular signatures that predict responders to FOLFOX therapy for unresectable CRC.", "type": "Expression profiling by array", "pubmed_id": "22095227", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE28702", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4396", "description": "metastatic lesion", "sample_id": [ "GSM710881", "GSM710883", "GSM710913", "GSM710915", "GSM710916", "GSM710918" ], "type": "specimen", "id": "GDS4396_1" }, { "dataset_id": "GDS4396", "description": "primary lesion", "sample_id": [ "GSM710875", "GSM710877", "GSM710879", "GSM710885", "GSM710886", "GSM710888", "GSM710890", "GSM710892", "GSM710894", "GSM710896", "GSM710898", "GSM710900", "GSM710902", "GSM710905", "GSM710906", "GSM710908", "GSM710911", "GSM710920", "GSM710922", "GSM710924", "GSM710926", "GSM710928", "GSM710930" ], "type": "specimen", "id": "GDS4396_2" }, { "dataset_id": "GDS4396", "description": "FOLFOX responder", "sample_id": [ "GSM710902", "GSM710900", "GSM710898", "GSM710896", "GSM710894", "GSM710892", "GSM710890", "GSM710888", "GSM710886", "GSM710885", "GSM710883", "GSM710881", "GSM710879", "GSM710877", "GSM710875" ], "type": "individual", "id": "GDS4396_3" }, { "dataset_id": "GDS4396", "description": "FOLFOX non-responder", "sample_id": [ "GSM710930", "GSM710928", "GSM710926", "GSM710924", "GSM710922", "GSM710920", "GSM710918", "GSM710916", "GSM710915", "GSM710913", "GSM710911", "GSM710908", "GSM710906", "GSM710905" ], "type": "individual", "id": "GDS4396_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4396", "version": 1.0, "instances": "29", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4396.tab", "compression": "gz" } ], [ [ "GDS4397.tab" ], { "title": "5-aza-2\u2019-deoxycytidine effect on colorectal cancer cell lines", "description": "Analysis of colorectal cancer (CRC) cell lines treated with 5-aza-2\u2019-deoxycytidine (5-aza-dC). 5-aza-dC, a DNA methylation inhibitor, was used to reactivate silenced genes in the CRC cell lines. Results provide insight into the molecular mechanisms underlying epigenetic alterations in CRC.", "type": "Expression profiling by array", "pubmed_id": "22399497", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE32323", "order": "none", "update_date": "Mar 07 2013", "subsets": [ { "dataset_id": "GDS4397", "description": "COLO320", "sample_id": [ "GSM800776", "GSM800777" ], "type": "cell line", "id": "GDS4397_1" }, { "dataset_id": "GDS4397", "description": "HCT116", "sample_id": [ "GSM800778", "GSM800779" ], "type": "cell line", "id": "GDS4397_2" }, { "dataset_id": "GDS4397", "description": "HT29", "sample_id": [ "GSM800780", "GSM800781" ], "type": "cell line", "id": "GDS4397_3" }, { "dataset_id": "GDS4397", "description": "RKO", "sample_id": [ "GSM800782", "GSM800783" ], "type": "cell line", "id": "GDS4397_4" }, { "dataset_id": "GDS4397", "description": "SW480", "sample_id": [ "GSM800784", "GSM800785" ], "type": "cell line", "id": "GDS4397_5" }, { "dataset_id": "GDS4397", "description": "5-aza-2'-deoxycytidine", "sample_id": [ "GSM800784", "GSM800782", "GSM800780", "GSM800778", "GSM800776" ], "type": "agent", "id": "GDS4397_6" }, { "dataset_id": "GDS4397", "description": "control", "sample_id": [ "GSM800785", "GSM800783", "GSM800781", "GSM800779", "GSM800777" ], "type": "agent", "id": "GDS4397_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4397", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4397.tab", "compression": "gz" } ], [ [ "GDS4398.tab" ], { "title": "Activated diabetogenic CD8+ G9C8 clone cells and transgenic NOD/LtJ CD8 T cells", "description": "Analysis of diabetogenic CD8+ G9C8 clone cells and transgenic NOD CD8 T cells. The clone and transgenic T cells display differences in their ability to kill \u03b2 cells and induce disease in vivo. Results provide insight into the molecular basis of such differences between the two sets of CD8 T cells.", "type": "Expression profiling by array", "pubmed_id": "22773667", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE31726", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4398", "description": "transgenic NOD/LtJ CD8 T cells", "sample_id": [ "GSM787645", "GSM787646" ], "type": "cell type", "id": "GDS4398_1" }, { "dataset_id": "GDS4398", "description": "in vitro cultured G9C8 clone T cells", "sample_id": [ "GSM787647", "GSM787648", "GSM787649" ], "type": "cell type", "id": "GDS4398_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4398", "version": 1.0, "instances": "5", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4398.tab", "compression": "gz" } ], [ [ "GDS4399.tab" ], { "title": "Polycystic ovary syndrome: granulosa cells", "description": "Analysis of granulosa cells from ovarian aspirates from polycystic ovary syndrome (PCOS) women undergoing in vitro fertilization. PCOS is an endocrine disorder associated with greater risk for infertility, diabetes and cardiovascular diseases. Results provide insight into molecular basis of PCOS.", "type": "Expression profiling by array", "pubmed_id": "22904171", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE34526", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4399", "description": "control", "sample_id": [ "GSM850527", "GSM850528", "GSM850529" ], "type": "disease state", "id": "GDS4399_1" }, { "dataset_id": "GDS4399", "description": "polycystic ovary syndrome", "sample_id": [ "GSM850530", "GSM850531", "GSM850532", "GSM850533", "GSM850534", "GSM850535", "GSM850536" ], "type": "disease state", "id": "GDS4399_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4399", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4399.tab", "compression": "gz" } ], [ [ "GDS440.tab" ], { "title": "Intraspecific variation - Zimbabwe53", "description": "Analysis of intraspecific expression differentiation shows that gene expression in males evolves more rapidly than in females. Canton S, Oregon R, Hikone R, a St. Louis-derived isofemale strain and four Zimbabwe-derived lines examined.", "type": "Expression profiling by array", "pubmed_id": "12907700", "platform": "GPL356", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6101", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE539", "order": "none", "update_date": "Nov 17 2003", "subsets": [ { "dataset_id": "GDS440", "description": "Zimbabwe53", "sample_id": [ "GSM7866" ], "type": "strain", "id": "GDS440_1" }, { "dataset_id": "GDS440", "description": "Zimbabwe30", "sample_id": [ "GSM7871" ], "type": "strain", "id": "GDS440_2" }, { "dataset_id": "GDS440", "description": "Zimbabwe2", "sample_id": [ "GSM7879" ], "type": "strain", "id": "GDS440_3" }, { "dataset_id": "GDS440", "description": "Canton S", "sample_id": [ "GSM7865" ], "type": "strain", "id": "GDS440_4" }, { "dataset_id": "GDS440", "description": "Oregon R", "sample_id": [ "GSM7869" ], "type": "strain", "id": "GDS440_5" }, { "dataset_id": "GDS440", "description": "St Louis", "sample_id": [ "GSM7878" ], "type": "strain", "id": "GDS440_6" } ], "taxid": "7227", "genes": 5702, "aggregation_function": "mean", "name": "GDS440", "version": 1.0, "instances": "6", "variables": 5704, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS440.tab", "compression": "gz" } ], [ [ "GDS4400.tab" ], { "title": "Fibroblast-derived induced pluripotent stem cells harboring pathogenic leucine-rich repeat kinase 2 mutation", "description": "Analysis of IPSCs generated from LRRK2 (Gly2019Ser) mutation-bearing patient fibroblasts by cell reprogramming. The LRRK2 (G2019S) mutation causes familial Parkinson's disease (PD). Results provide insight into the molecular mechanisms underlying PD.", "type": "Expression profiling by array", "pubmed_id": "23075850", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE33298", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4400", "description": "fibroblast", "sample_id": [ "GSM823566", "GSM823565", "GSM823568", "GSM823567", "GSM823570", "GSM823569" ], "type": "cell type", "id": "GDS4400_1" }, { "dataset_id": "GDS4400", "description": "iPSC", "sample_id": [ "GSM823572", "GSM823571", "GSM823574", "GSM823573", "GSM823576", "GSM823575" ], "type": "cell type", "id": "GDS4400_2" }, { "dataset_id": "GDS4400", "description": "ESC", "sample_id": [ "GSM823578", "GSM823577" ], "type": "cell type", "id": "GDS4400_3" }, { "dataset_id": "GDS4400", "description": "LRRK2 wildtype", "sample_id": [ "GSM823565", "GSM823566", "GSM823571", "GSM823572", "GSM823577", "GSM823578" ], "type": "genotype/variation", "id": "GDS4400_4" }, { "dataset_id": "GDS4400", "description": "LRRK2 mutant GS/WT", "sample_id": [ "GSM823569", "GSM823570", "GSM823575", "GSM823576" ], "type": "genotype/variation", "id": "GDS4400_5" }, { "dataset_id": "GDS4400", "description": "LRRK2 mutant GS/GS", "sample_id": [ "GSM823567", "GSM823568", "GSM823573", "GSM823574" ], "type": "genotype/variation", "id": "GDS4400_6" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4400", "version": 1.0, "instances": "14", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4400.tab", "compression": "gz" } ], [ [ "GDS4401.tab" ], { "title": "H9 hESC-derived neural stem cells harboring pathogenic leucine-rich repeat kinase 2 mutation", "description": "Analysis of LRRK2 (Gly2019Ser) mutant neural stem cells (NSC) treated with LRRK2 kinase specific inhibitor LRRK2-IN-1. The LRRK2 (G2019S) mutation causes familial Parkinson's disease. Results provide insight into molecular basis of progressive degeneration of NSCs caused by pathogenic LRRK2.", "type": "Expression profiling by array", "pubmed_id": "23075850", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE36321", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4401", "description": "LRRK2 mutant WT/GS", "sample_id": [ "GSM888891", "GSM888892", "GSM888893", "GSM888894", "GSM888895", "GSM888896" ], "type": "genotype/variation", "id": "GDS4401_1" }, { "dataset_id": "GDS4401", "description": "LRRK2 wildtype", "sample_id": [ "GSM888888", "GSM888889", "GSM888890" ], "type": "genotype/variation", "id": "GDS4401_2" }, { "dataset_id": "GDS4401", "description": "LRRK2-IN-1 inhibitor", "sample_id": [ "GSM888894", "GSM888895", "GSM888896" ], "type": "agent", "id": "GDS4401_3" }, { "dataset_id": "GDS4401", "description": "untreated", "sample_id": [ "GSM888888", "GSM888889", "GSM888890", "GSM888891", "GSM888892", "GSM888893" ], "type": "agent", "id": "GDS4401_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4401", "version": 1.0, "instances": "9", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4401.tab", "compression": "gz" } ], [ [ "GDS4402.tab" ], { "title": "Cell lines derived from metastatic lung adenocarcinoma model", "description": "Analysis of KrasG12D;p53-/- cell lines derived from primary lung tumors or from metastases (liver, lymph node). Results provide insight into the molecular mechanisms underlying changes in extracellular matrix (ECM)-adhesion in metastatic progression.", "type": "Expression profiling by array", "pubmed_id": "23047680", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE40222", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4402", "description": "primary lung tumor-derived", "sample_id": [ "GSM988546", "GSM988547", "GSM988549", "GSM988550", "GSM988552", "GSM988553", "GSM988555" ], "type": "cell line", "id": "GDS4402_1" }, { "dataset_id": "GDS4402", "description": "liver metastasis-derived", "sample_id": [ "GSM988548", "GSM988551" ], "type": "cell line", "id": "GDS4402_2" }, { "dataset_id": "GDS4402", "description": "lymph node metastasis-derived", "sample_id": [ "GSM988545", "GSM988554", "GSM988556" ], "type": "cell line", "id": "GDS4402_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4402", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4402.tab", "compression": "gz" } ], [ [ "GDS4403.tab" ], { "title": "Endothelial progenitor cells from cord blood and adult peripheral blood", "description": "Analysis of outgrown endothelial progenitor cells (EPC) isolated from 2 different sources: cord blood or adult peripheral blood. EPC from these different anatomic locations possess unique biological properties. Results provide insight into the underlying molecular mechanisms of these properties.", "type": "Expression profiling by array", "pubmed_id": "22943456", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE39763", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4403", "description": "cord blood", "sample_id": [ "GSM978845", "GSM978846" ], "type": "tissue", "id": "GDS4403_1" }, { "dataset_id": "GDS4403", "description": "peripheral blood", "sample_id": [ "GSM978847", "GSM978848" ], "type": "tissue", "id": "GDS4403_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4403", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4403.tab", "compression": "gz" } ], [ [ "GDS4404.tab" ], { "title": "Facioscapulohumeral muscular dystrophy: bicep and deltoid muscles", "description": "Analysis of biceps and deltoids of facioscapulohumeral muscular dystrophy (FSHD) subjects and their unaffected first-degree relatives. FSHD is progressive neuromuscular disorder affecting biceps more severely than deltoid muscles. Results provide insight into molecular basis of FSHD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22988124", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE36398", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4404", "description": "bicep", "sample_id": [ "GSM892342", "GSM892345", "GSM892349", "GSM892353", "GSM892355", "GSM892361", "GSM892373", "GSM892365", "GSM892369", "GSM892377", "GSM892381", "GSM892383", "GSM892387", "GSM892344", "GSM892347", "GSM892351", "GSM892357", "GSM892359", "GSM892363", "GSM892375", "GSM892367", "GSM892371", "GSM892379", "GSM892385", "GSM892389" ], "type": "tissue", "id": "GDS4404_1" }, { "dataset_id": "GDS4404", "description": "deltoid", "sample_id": [ "GSM892341", "GSM892346", "GSM892350", "GSM892354", "GSM892356", "GSM892362", "GSM892374", "GSM892366", "GSM892370", "GSM892378", "GSM892382", "GSM892384", "GSM892388", "GSM892343", "GSM892348", "GSM892352", "GSM892358", "GSM892360", "GSM892364", "GSM892376", "GSM892368", "GSM892372", "GSM892380", "GSM892386", "GSM892390" ], "type": "tissue", "id": "GDS4404_2" }, { "dataset_id": "GDS4404", "description": "facioscapulohumeral muscular dystrophy", "sample_id": [ "GSM892388", "GSM892384", "GSM892382", "GSM892378", "GSM892370", "GSM892366", "GSM892374", "GSM892362", "GSM892356", "GSM892354", "GSM892350", "GSM892346", "GSM892341", "GSM892387", "GSM892383", "GSM892381", "GSM892377", "GSM892369", "GSM892365", "GSM892373", "GSM892361", "GSM892355", "GSM892353", "GSM892349", "GSM892345", "GSM892342" ], "type": "disease state", "id": "GDS4404_3" }, { "dataset_id": "GDS4404", "description": "control", "sample_id": [ "GSM892344", "GSM892347", "GSM892351", "GSM892357", "GSM892359", "GSM892363", "GSM892375", "GSM892367", "GSM892371", "GSM892379", "GSM892385", "GSM892389", "GSM892343", "GSM892348", "GSM892352", "GSM892358", "GSM892360", "GSM892364", "GSM892376", "GSM892368", "GSM892372", "GSM892380", "GSM892386", "GSM892390" ], "type": "disease state", "id": "GDS4404_4" }, { "dataset_id": "GDS4404", "description": "cohort 03", "sample_id": [ "GSM892341", "GSM892342", "GSM892343", "GSM892344" ], "type": "other", "id": "GDS4404_5" }, { "dataset_id": "GDS4404", "description": "cohort 07", "sample_id": [ "GSM892345", "GSM892346", "GSM892347", "GSM892348" ], "type": "other", "id": "GDS4404_6" }, { "dataset_id": "GDS4404", "description": "cohort 09", "sample_id": [ "GSM892349", "GSM892350", "GSM892351", "GSM892352" ], "type": "other", "id": "GDS4404_7" }, { "dataset_id": "GDS4404", "description": "cohort 12", "sample_id": [ "GSM892353", "GSM892354", "GSM892355", "GSM892356", "GSM892357", "GSM892358", "GSM892359", "GSM892360" ], "type": "other", "id": "GDS4404_8" }, { "dataset_id": "GDS4404", "description": "cohort 13", "sample_id": [ "GSM892361", "GSM892362", "GSM892363", "GSM892364" ], "type": "other", "id": "GDS4404_9" }, { "dataset_id": "GDS4404", "description": "cohort 18", "sample_id": [ "GSM892365", "GSM892366", "GSM892367", "GSM892368" ], "type": "other", "id": "GDS4404_10" }, { "dataset_id": "GDS4404", "description": "cohort 19", "sample_id": [ "GSM892369", "GSM892370", "GSM892371", "GSM892372" ], "type": "other", "id": "GDS4404_11" }, { "dataset_id": "GDS4404", "description": "cohort 15", "sample_id": [ "GSM892373", "GSM892374", "GSM892375", "GSM892376" ], "type": "other", "id": "GDS4404_12" }, { "dataset_id": "GDS4404", "description": "cohort 20", "sample_id": [ "GSM892377", "GSM892378", "GSM892379", "GSM892380" ], "type": "other", "id": "GDS4404_13" }, { "dataset_id": "GDS4404", "description": "cohort 21", "sample_id": [ "GSM892381", "GSM892382", "GSM892383", "GSM892384", "GSM892385", "GSM892386" ], "type": "other", "id": "GDS4404_14" }, { "dataset_id": "GDS4404", "description": "cohort 22", "sample_id": [ "GSM892387", "GSM892388", "GSM892389", "GSM892390" ], "type": "other", "id": "GDS4404_15" }, { "dataset_id": "GDS4404", "description": "03A", "sample_id": [ "GSM892341", "GSM892342" ], "type": "individual", "id": "GDS4404_16" }, { "dataset_id": "GDS4404", "description": "03U", "sample_id": [ "GSM892343", "GSM892344" ], "type": "individual", "id": "GDS4404_17" }, { "dataset_id": "GDS4404", "description": "07A", "sample_id": [ "GSM892345", "GSM892346" ], "type": "individual", "id": "GDS4404_18" }, { "dataset_id": "GDS4404", "description": "07U", "sample_id": [ "GSM892347", "GSM892348" ], "type": "individual", "id": "GDS4404_19" }, { "dataset_id": "GDS4404", "description": "09A", "sample_id": [ "GSM892349", "GSM892350" ], "type": "individual", "id": "GDS4404_20" }, { "dataset_id": "GDS4404", "description": "09U", "sample_id": [ "GSM892351", "GSM892352" ], "type": "individual", "id": "GDS4404_21" }, { "dataset_id": "GDS4404", "description": "12A", "sample_id": [ "GSM892353", "GSM892354" ], "type": "individual", "id": "GDS4404_22" }, { "dataset_id": "GDS4404", "description": "12B", "sample_id": [ "GSM892355", "GSM892356" ], "type": "individual", "id": "GDS4404_23" }, { "dataset_id": "GDS4404", "description": "12U", "sample_id": [ "GSM892357", "GSM892358" ], "type": "individual", "id": "GDS4404_24" }, { "dataset_id": "GDS4404", "description": "12V", "sample_id": [ "GSM892359", "GSM892360" ], "type": "individual", "id": "GDS4404_25" }, { "dataset_id": "GDS4404", "description": "13B", "sample_id": [ "GSM892361", "GSM892362" ], "type": "individual", "id": "GDS4404_26" }, { "dataset_id": "GDS4404", "description": "13U", "sample_id": [ "GSM892363", "GSM892364" ], "type": "individual", "id": "GDS4404_27" }, { "dataset_id": "GDS4404", "description": "18A", "sample_id": [ "GSM892365", "GSM892366" ], "type": "individual", "id": "GDS4404_28" }, { "dataset_id": "GDS4404", "description": "18U", "sample_id": [ "GSM892367", "GSM892368" ], "type": "individual", "id": "GDS4404_29" }, { "dataset_id": "GDS4404", "description": "19A", "sample_id": [ "GSM892369", "GSM892370" ], "type": "individual", "id": "GDS4404_30" }, { "dataset_id": "GDS4404", "description": "19U", "sample_id": [ "GSM892371", "GSM892372" ], "type": "individual", "id": "GDS4404_31" }, { "dataset_id": "GDS4404", "description": "15A", "sample_id": [ "GSM892373", "GSM892374" ], "type": "individual", "id": "GDS4404_32" }, { "dataset_id": "GDS4404", "description": "15V", "sample_id": [ "GSM892375", "GSM892376" ], "type": "individual", "id": "GDS4404_33" }, { "dataset_id": "GDS4404", "description": "20A", "sample_id": [ "GSM892377", "GSM892378" ], "type": "individual", "id": "GDS4404_34" }, { "dataset_id": "GDS4404", "description": "20U", "sample_id": [ "GSM892379", "GSM892380" ], "type": "individual", "id": "GDS4404_35" }, { "dataset_id": "GDS4404", "description": "21A", "sample_id": [ "GSM892381", "GSM892382" ], "type": "individual", "id": "GDS4404_36" }, { "dataset_id": "GDS4404", "description": "21B", "sample_id": [ "GSM892383", "GSM892384" ], "type": "individual", "id": "GDS4404_37" }, { "dataset_id": "GDS4404", "description": "21U", "sample_id": [ "GSM892385", "GSM892386" ], "type": "individual", "id": "GDS4404_38" }, { "dataset_id": "GDS4404", "description": "22A", "sample_id": [ "GSM892387", "GSM892388" ], "type": "individual", "id": "GDS4404_39" }, { "dataset_id": "GDS4404", "description": "22U", "sample_id": [ "GSM892389", "GSM892390" ], "type": "individual", "id": "GDS4404_40" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4404", "version": 1.0, "instances": "50", "variables": 26808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4404.tab", "compression": "gz" } ], [ [ "GDS4406.tab" ], { "title": "Primary mammary epithelial cells response to heat-inactivated Escherichia coli or Staphylococcus aureus: time course", "description": "Analysis of mammary epithelial cells (MECs) challenged with heat-killed particles of E. coli or S. aureus for up to 24 hrs. Results provide insight into the molecular mechanisms underlying the pathogen-specific disease patterns.", "type": "Expression profiling by array", "pubmed_id": "21115717", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE25413", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4406", "description": "E. coli", "sample_id": [ "GSM624022", "GSM624027", "GSM624032", "GSM624021", "GSM624026", "GSM624031", "GSM624023", "GSM624028", "GSM624033", "GSM624020", "GSM624025", "GSM624030" ], "type": "stress", "id": "GDS4406_1" }, { "dataset_id": "GDS4406", "description": "S. aureus", "sample_id": [ "GSM624050", "GSM624055", "GSM624060", "GSM624049", "GSM624054", "GSM624059", "GSM624051", "GSM624056", "GSM624061", "GSM624048", "GSM624053", "GSM624058" ], "type": "stress", "id": "GDS4406_2" }, { "dataset_id": "GDS4406", "description": "unchallenged control (E. coli)", "sample_id": [ "GSM624019", "GSM624024", "GSM624029" ], "type": "stress", "id": "GDS4406_3" }, { "dataset_id": "GDS4406", "description": "unchallenged control (S. aureus)", "sample_id": [ "GSM624047", "GSM624052", "GSM624057" ], "type": "stress", "id": "GDS4406_4" }, { "dataset_id": "GDS4406", "description": "n/a", "sample_id": [ "GSM624019", "GSM624024", "GSM624029", "GSM624047", "GSM624052", "GSM624057" ], "type": "time", "id": "GDS4406_5" }, { "dataset_id": "GDS4406", "description": "hour 1", "sample_id": [ "GSM624020", "GSM624025", "GSM624030", "GSM624048", "GSM624053", "GSM624058" ], "type": "time", "id": "GDS4406_6" }, { "dataset_id": "GDS4406", "description": "hour 3", "sample_id": [ "GSM624021", "GSM624026", "GSM624031", "GSM624049", "GSM624054", "GSM624059" ], "type": "time", "id": "GDS4406_7" }, { "dataset_id": "GDS4406", "description": "hour 6", "sample_id": [ "GSM624022", "GSM624027", "GSM624032", "GSM624050", "GSM624055", "GSM624060" ], "type": "time", "id": "GDS4406_8" }, { "dataset_id": "GDS4406", "description": "hour 24", "sample_id": [ "GSM624023", "GSM624028", "GSM624033", "GSM624051", "GSM624056", "GSM624061" ], "type": "time", "id": "GDS4406_9" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4406", "version": 1.0, "instances": "30", "variables": 19376, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4406.tab", "compression": "gz" } ], [ [ "GDS4407.tab" ], { "title": "Biallelic CEBPA-mutated acute myeloid leukemia with multilineage dysplasia: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from biallelic CEBPA (encoding CCAAT/enhancer binding protein)-mutated, acute myeloid leukemia (AML) patients with or without multilineage dysplasia (MLD). Cases without CEBPA mutations also examined. Results provide insight into the classification of CEBPA-mutated AML patients.", "type": "Expression profiling by array", "pubmed_id": "22442349", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE33223", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4407", "description": "biallelic AML, MLD-negative", "sample_id": [ "GSM822482", "GSM822483", "GSM822484", "GSM822485", "GSM822486", "GSM822487", "GSM822488", "GSM822489", "GSM822490", "GSM822491", "GSM822492" ], "type": "disease state", "id": "GDS4407_1" }, { "dataset_id": "GDS4407", "description": "biallelic AML, MLD-positive", "sample_id": [ "GSM822473", "GSM822474", "GSM822475", "GSM822476", "GSM822477", "GSM822478", "GSM822479", "GSM822480", "GSM822481" ], "type": "disease state", "id": "GDS4407_2" }, { "dataset_id": "GDS4407", "description": "control", "sample_id": [ "GSM822463", "GSM822464", "GSM822465", "GSM822466", "GSM822467", "GSM822468", "GSM822469", "GSM822470", "GSM822471", "GSM822472" ], "type": "disease state", "id": "GDS4407_3" }, { "dataset_id": "GDS4407", "description": "CEBPA wild-type", "sample_id": [ "GSM822463", "GSM822464", "GSM822465", "GSM822466", "GSM822467", "GSM822468", "GSM822469", "GSM822470", "GSM822471", "GSM822472" ], "type": "genotype/variation", "id": "GDS4407_4" }, { "dataset_id": "GDS4407", "description": "biallelic CEBPA mutated", "sample_id": [ "GSM822482", "GSM822483", "GSM822484", "GSM822485", "GSM822486", "GSM822487", "GSM822488", "GSM822489", "GSM822490", "GSM822491", "GSM822492", "GSM822473", "GSM822474", "GSM822475", "GSM822476", "GSM822477", "GSM822478", "GSM822479", "GSM822480", "GSM822481" ], "type": "genotype/variation", "id": "GDS4407_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4407", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4407.tab", "compression": "gz" } ], [ [ "GDS4408.tab" ], { "title": "Nitric oxide generator DETA-NONOate effect on in vitro neuronal injury model: time course", "description": "Analysis of primary cortical neurons treated with nitric oxide (NO) generator DETA-NONOate for up to 24 hrs. High doses of NO, often observed in neurodegenerative disease pathogenesis, cause neuronal death. Results provide insight into molecular events contributing to NO-induced neuronal injury.", "type": "Expression profiling by array", "pubmed_id": "21352476", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE22087", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4408", "description": "control", "sample_id": [ "GSM549080", "GSM549081", "GSM549082", "GSM549083", "GSM549084" ], "type": "agent", "id": "GDS4408_1" }, { "dataset_id": "GDS4408", "description": "DETA-NONOate", "sample_id": [ "GSM549085", "GSM549086", "GSM549087", "GSM549088", "GSM549089", "GSM549090", "GSM549091", "GSM549092", "GSM549093" ], "type": "agent", "id": "GDS4408_2" }, { "dataset_id": "GDS4408", "description": "control", "sample_id": [ "GSM549080", "GSM549081", "GSM549082", "GSM549083", "GSM549084" ], "type": "time", "id": "GDS4408_3" }, { "dataset_id": "GDS4408", "description": "8 hrs", "sample_id": [ "GSM549085", "GSM549086", "GSM549087" ], "type": "time", "id": "GDS4408_4" }, { "dataset_id": "GDS4408", "description": "15 hrs", "sample_id": [ "GSM549088", "GSM549089", "GSM549090" ], "type": "time", "id": "GDS4408_5" }, { "dataset_id": "GDS4408", "description": "24 hrs", "sample_id": [ "GSM549091", "GSM549092", "GSM549093" ], "type": "time", "id": "GDS4408_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4408", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4408.tab", "compression": "gz" } ], [ [ "GDS4409.tab" ], { "title": "Infantile-onset Pompe response to recombinant human lysosomal acid alpha-glucosidase (rhGAA) treatment: quadriceps", "description": "Analysis of quadriceps biopsies from infantile-onset Pompe disease patients treated with recombinant human lysosomal acid alpha-glucosidase (rhGAA, Myozyme) for up to 52 weeks. Results provide insight into molecular mechanisms underlying the response to therapy (positive vs. poor clinical outcome).", "type": "Expression profiling by array", "pubmed_id": "22658377", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "transformed count", "reference_series": "GSE38680", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4409", "description": "patient 1", "sample_id": [ "GSM947487", "GSM947488", "GSM947489" ], "type": "individual", "id": "GDS4409_1" }, { "dataset_id": "GDS4409", "description": "patient 2", "sample_id": [ "GSM947490", "GSM947491", "GSM947492" ], "type": "individual", "id": "GDS4409_2" }, { "dataset_id": "GDS4409", "description": "patient 3", "sample_id": [ "GSM947493", "GSM947494", "GSM947495" ], "type": "individual", "id": "GDS4409_3" }, { "dataset_id": "GDS4409", "description": "patient 4", "sample_id": [ "GSM947496", "GSM947497", "GSM947498" ], "type": "individual", "id": "GDS4409_4" }, { "dataset_id": "GDS4409", "description": "patient 5", "sample_id": [ "GSM947499", "GSM947500", "GSM947501" ], "type": "individual", "id": "GDS4409_5" }, { "dataset_id": "GDS4409", "description": "patient 6", "sample_id": [ "GSM947502", "GSM947503", "GSM947504" ], "type": "individual", "id": "GDS4409_6" }, { "dataset_id": "GDS4409", "description": "patient 7", "sample_id": [ "GSM947505", "GSM947506", "GSM947507" ], "type": "individual", "id": "GDS4409_7" }, { "dataset_id": "GDS4409", "description": "patient 8", "sample_id": [ "GSM947508", "GSM947509", "GSM947510" ], "type": "individual", "id": "GDS4409_8" }, { "dataset_id": "GDS4409", "description": "patient 9", "sample_id": [ "GSM947511", "GSM947512", "GSM947513" ], "type": "individual", "id": "GDS4409_9" }, { "dataset_id": "GDS4409", "description": "patient 10", "sample_id": [ "GSM947514", "GSM947515", "GSM947516" ], "type": "individual", "id": "GDS4409_10" }, { "dataset_id": "GDS4409", "description": "patient 11", "sample_id": [ "GSM947517", "GSM947518" ], "type": "individual", "id": "GDS4409_11" }, { "dataset_id": "GDS4409", "description": "control 1", "sample_id": [ "GSM947480" ], "type": "individual", "id": "GDS4409_12" }, { "dataset_id": "GDS4409", "description": "control 2", "sample_id": [ "GSM947481" ], "type": "individual", "id": "GDS4409_13" }, { "dataset_id": "GDS4409", "description": "control 3", "sample_id": [ "GSM947482" ], "type": "individual", "id": "GDS4409_14" }, { "dataset_id": "GDS4409", "description": "control 4", "sample_id": [ "GSM947483" ], "type": "individual", "id": "GDS4409_15" }, { "dataset_id": "GDS4409", "description": "control 5", "sample_id": [ "GSM947484" ], "type": "individual", "id": "GDS4409_16" }, { "dataset_id": "GDS4409", "description": "control 6", "sample_id": [ "GSM947485" ], "type": "individual", "id": "GDS4409_17" }, { "dataset_id": "GDS4409", "description": "control 7", "sample_id": [ "GSM947486" ], "type": "individual", "id": "GDS4409_18" }, { "dataset_id": "GDS4409", "description": "infantile-onset Pompe", "sample_id": [ "GSM947487", "GSM947488", "GSM947489", "GSM947490", "GSM947491", "GSM947492", "GSM947493", "GSM947494", "GSM947495", "GSM947496", "GSM947497", "GSM947498", "GSM947499", "GSM947500", "GSM947501", "GSM947502", "GSM947503", "GSM947504", "GSM947505", "GSM947506", "GSM947507", "GSM947508", "GSM947509", "GSM947510", "GSM947511", "GSM947512", "GSM947513", "GSM947514", "GSM947515", "GSM947516", "GSM947517", "GSM947518" ], "type": "disease state", "id": "GDS4409_19" }, { "dataset_id": "GDS4409", "description": "control", "sample_id": [ "GSM947480", "GSM947481", "GSM947482", "GSM947483", "GSM947484", "GSM947485", "GSM947486" ], "type": "disease state", "id": "GDS4409_20" }, { "dataset_id": "GDS4409", "description": "rhGAA", "sample_id": [ "GSM947516", "GSM947489", "GSM947492", "GSM947495", "GSM947498", "GSM947501", "GSM947504", "GSM947507", "GSM947510", "GSM947513", "GSM947515", "GSM947518", "GSM947488", "GSM947491", "GSM947494", "GSM947497", "GSM947500", "GSM947503", "GSM947506", "GSM947509", "GSM947512", "GSM947514", "GSM947517", "GSM947487", "GSM947490", "GSM947493", "GSM947496", "GSM947499", "GSM947502", "GSM947505", "GSM947508", "GSM947511" ], "type": "agent", "id": "GDS4409_21" }, { "dataset_id": "GDS4409", "description": "none", "sample_id": [ "GSM947480", "GSM947481", "GSM947482", "GSM947483", "GSM947484", "GSM947485", "GSM947486" ], "type": "agent", "id": "GDS4409_22" }, { "dataset_id": "GDS4409", "description": "week 0", "sample_id": [ "GSM947514", "GSM947517", "GSM947487", "GSM947490", "GSM947493", "GSM947496", "GSM947499", "GSM947502", "GSM947505", "GSM947508", "GSM947511" ], "type": "time", "id": "GDS4409_23" }, { "dataset_id": "GDS4409", "description": "week 12", "sample_id": [ "GSM947515", "GSM947518", "GSM947488", "GSM947491", "GSM947494", "GSM947497", "GSM947500", "GSM947503", "GSM947506", "GSM947509", "GSM947512" ], "type": "time", "id": "GDS4409_24" }, { "dataset_id": "GDS4409", "description": "week 52", "sample_id": [ "GSM947516", "GSM947489", "GSM947492", "GSM947495", "GSM947498", "GSM947501", "GSM947504", "GSM947507", "GSM947510", "GSM947513" ], "type": "time", "id": "GDS4409_25" }, { "dataset_id": "GDS4409", "description": "n/a", "sample_id": [ "GSM947480", "GSM947481", "GSM947482", "GSM947483", "GSM947484", "GSM947485", "GSM947486" ], "type": "time", "id": "GDS4409_26" }, { "dataset_id": "GDS4409", "description": "positive clinical outcome", "sample_id": [ "GSM947490", "GSM947491", "GSM947492", "GSM947499", "GSM947500", "GSM947501", "GSM947502", "GSM947503", "GSM947504", "GSM947505", "GSM947506", "GSM947507", "GSM947508", "GSM947509", "GSM947510", "GSM947511", "GSM947512", "GSM947513", "GSM947514", "GSM947515", "GSM947516" ], "type": "other", "id": "GDS4409_27" }, { "dataset_id": "GDS4409", "description": "poor clinical outcome", "sample_id": [ "GSM947487", "GSM947488", "GSM947489", "GSM947493", "GSM947494", "GSM947495", "GSM947496", "GSM947497", "GSM947498", "GSM947517", "GSM947518" ], "type": "other", "id": "GDS4409_28" }, { "dataset_id": "GDS4409", "description": "n/a", "sample_id": [ "GSM947480", "GSM947481", "GSM947482", "GSM947483", "GSM947484", "GSM947485", "GSM947486" ], "type": "other", "id": "GDS4409_29" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4409", "version": 1.0, "instances": "39", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4409.tab", "compression": "gz" } ], [ [ "GDS441.tab" ], { "title": "Intraspecific variation - Zimbabwe53 (dye-swap)", "description": "Analysis of intraspecific expression differentiation shows that gene expression in males evolves more rapidly than in females. Canton S, Oregon R, Hikone R, a St. Louis-derived isofemale strain and four Zimbabwe-derived lines examined.", "type": "Expression profiling by array", "pubmed_id": "12907700", "platform": "GPL356", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6101", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE539", "order": "none", "update_date": "Nov 17 2003", "subsets": [ { "dataset_id": "GDS441", "description": "Zimbabwe53", "sample_id": [ "GSM7866" ], "type": "strain", "id": "GDS441_1" }, { "dataset_id": "GDS441", "description": "Zimbabwe30", "sample_id": [ "GSM7870" ], "type": "strain", "id": "GDS441_2" }, { "dataset_id": "GDS441", "description": "Canton S", "sample_id": [ "GSM7864" ], "type": "strain", "id": "GDS441_3" }, { "dataset_id": "GDS441", "description": "Oregon R", "sample_id": [ "GSM7872" ], "type": "strain", "id": "GDS441_4" }, { "dataset_id": "GDS441", "description": "St Louis", "sample_id": [ "GSM7881" ], "type": "strain", "id": "GDS441_5" } ], "taxid": "7227", "genes": 5702, "aggregation_function": "mean", "name": "GDS441", "version": 1.0, "instances": "5", "variables": 5704, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS441.tab", "compression": "gz" } ], [ [ "GDS4410.tab" ], { "title": "Infantile-onset Pompe disease: biceps", "description": "Analysis of biceps biopsies from untreated patients with infantile-onset Pompe. Pompe disease is a genetic disorder resulting from lysosomal acid alpha-glucosidase (GAA) deficiency; the severest form affects infants. Results provide insight into the molecular basis of infantile-onset Pompe disease.", "type": "Expression profiling by array", "pubmed_id": "22658377", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE38680", "order": "none", "update_date": "Mar 08 2013", "subsets": [ { "dataset_id": "GDS4410", "description": "infantile-onset Pompe", "sample_id": [ "GSM947471", "GSM947472", "GSM947473", "GSM947474", "GSM947475", "GSM947476", "GSM947477", "GSM947478", "GSM947479" ], "type": "disease state", "id": "GDS4410_1" }, { "dataset_id": "GDS4410", "description": "control", "sample_id": [ "GSM947461", "GSM947462", "GSM947463", "GSM947464", "GSM947465", "GSM947466", "GSM947467", "GSM947468", "GSM947469", "GSM947470" ], "type": "disease state", "id": "GDS4410_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4410", "version": 1.0, "instances": "19", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4410.tab", "compression": "gz" } ], [ [ "GDS4411.tab" ], { "title": "cAMP agonist forskolin effect on INS-1 insulinoma cell line: time course", "description": "Analysis of insulinoma cells after short-term (2hr) and long-term (16hr) stimulation with cAMP agonist forskolin. Incretin hormone GLP-1 enhances islet cell survival via cAMP pathway induction in beta cells. Results provide insight into mechanisms by which GLP-1 promotes pancreatic islet viability.", "type": "Expression profiling by array", "pubmed_id": "21949366", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE31736", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4411", "description": "forskolin", "sample_id": [ "GSM787764", "GSM787762" ], "type": "agent", "id": "GDS4411_1" }, { "dataset_id": "GDS4411", "description": "none", "sample_id": [ "GSM787763", "GSM787761" ], "type": "agent", "id": "GDS4411_2" }, { "dataset_id": "GDS4411", "description": "2 hours", "sample_id": [ "GSM787762", "GSM787761" ], "type": "time", "id": "GDS4411_3" }, { "dataset_id": "GDS4411", "description": "16 hours", "sample_id": [ "GSM787764", "GSM787763" ], "type": "time", "id": "GDS4411_4" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4411", "version": 1.0, "instances": "4", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4411.tab", "compression": "gz" } ], [ [ "GDS4412.tab" ], { "title": "Dietary fatty acid composition effect on vastus lateralis muscle", "description": "Analysis of skeletal muscle (SM) from insulin resistant men 4 hrs after consumption of meals high in saturated FA (SFA), monounsaturated FA (MUFA), or polyunsaturated FA (PUFA). Results provide insight into mechanisms underlying effects of FA composition on SM FA handling and insulin sensitivity.", "type": "Expression profiling by array", "pubmed_id": "22338035", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE31901", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4412", "description": "saturated FA", "sample_id": [ "GSM790742", "GSM790743", "GSM790744", "GSM790745", "GSM790754", "GSM790755", "GSM790756", "GSM790757", "GSM790768", "GSM790769", "GSM790774", "GSM790775", "GSM790778", "GSM790779", "GSM790784", "GSM790785", "GSM790790", "GSM790791" ], "type": "protocol", "id": "GDS4412_1" }, { "dataset_id": "GDS4412", "description": "monounsaturated FA", "sample_id": [ "GSM790738", "GSM790739", "GSM790746", "GSM790747", "GSM790752", "GSM790753", "GSM790758", "GSM790759", "GSM790764", "GSM790765", "GSM790766", "GSM790767", "GSM790772", "GSM790773", "GSM790782", "GSM790783", "GSM790786", "GSM790787", "GSM790792", "GSM790793" ], "type": "protocol", "id": "GDS4412_2" }, { "dataset_id": "GDS4412", "description": "polyunsaturated FA", "sample_id": [ "GSM790740", "GSM790741", "GSM790748", "GSM790749", "GSM790750", "GSM790751", "GSM790760", "GSM790761", "GSM790762", "GSM790763", "GSM790770", "GSM790771", "GSM790776", "GSM790777", "GSM790780", "GSM790781", "GSM790788", "GSM790789" ], "type": "protocol", "id": "GDS4412_3" }, { "dataset_id": "GDS4412", "description": "0 hour", "sample_id": [ "GSM790738", "GSM790740", "GSM790742", "GSM790792", "GSM790788", "GSM790790", "GSM790746", "GSM790748", "GSM790744", "GSM790752", "GSM790750", "GSM790754", "GSM790758", "GSM790760", "GSM790756", "GSM790764", "GSM790762", "GSM790766", "GSM790770", "GSM790768", "GSM790772", "GSM790776", "GSM790774", "GSM790782", "GSM790780", "GSM790778", "GSM790786", "GSM790784" ], "type": "time", "id": "GDS4412_4" }, { "dataset_id": "GDS4412", "description": "4 hours", "sample_id": [ "GSM790739", "GSM790741", "GSM790743", "GSM790793", "GSM790789", "GSM790791", "GSM790747", "GSM790749", "GSM790745", "GSM790753", "GSM790751", "GSM790755", "GSM790759", "GSM790761", "GSM790757", "GSM790765", "GSM790763", "GSM790767", "GSM790771", "GSM790769", "GSM790773", "GSM790777", "GSM790775", "GSM790783", "GSM790781", "GSM790779", "GSM790787", "GSM790785" ], "type": "time", "id": "GDS4412_5" }, { "dataset_id": "GDS4412", "description": "1", "sample_id": [ "GSM790738", "GSM790739", "GSM790740", "GSM790741", "GSM790742", "GSM790743" ], "type": "individual", "id": "GDS4412_6" }, { "dataset_id": "GDS4412", "description": "2", "sample_id": [ "GSM790744", "GSM790745", "GSM790746", "GSM790747", "GSM790748", "GSM790749" ], "type": "individual", "id": "GDS4412_7" }, { "dataset_id": "GDS4412", "description": "3", "sample_id": [ "GSM790750", "GSM790751", "GSM790752", "GSM790753", "GSM790754", "GSM790755" ], "type": "individual", "id": "GDS4412_8" }, { "dataset_id": "GDS4412", "description": "4", "sample_id": [ "GSM790756", "GSM790757", "GSM790758", "GSM790759", "GSM790760", "GSM790761" ], "type": "individual", "id": "GDS4412_9" }, { "dataset_id": "GDS4412", "description": "5", "sample_id": [ "GSM790762", "GSM790763", "GSM790764", "GSM790765" ], "type": "individual", "id": "GDS4412_10" }, { "dataset_id": "GDS4412", "description": "6", "sample_id": [ "GSM790766", "GSM790767", "GSM790768", "GSM790769", "GSM790770", "GSM790771" ], "type": "individual", "id": "GDS4412_11" }, { "dataset_id": "GDS4412", "description": "7", "sample_id": [ "GSM790772", "GSM790773", "GSM790774", "GSM790775", "GSM790776", "GSM790777" ], "type": "individual", "id": "GDS4412_12" }, { "dataset_id": "GDS4412", "description": "8", "sample_id": [ "GSM790778", "GSM790779", "GSM790780", "GSM790781", "GSM790782", "GSM790783" ], "type": "individual", "id": "GDS4412_13" }, { "dataset_id": "GDS4412", "description": "9", "sample_id": [ "GSM790784", "GSM790785", "GSM790786", "GSM790787" ], "type": "individual", "id": "GDS4412_14" }, { "dataset_id": "GDS4412", "description": "10", "sample_id": [ "GSM790788", "GSM790789", "GSM790790", "GSM790791", "GSM790792", "GSM790793" ], "type": "individual", "id": "GDS4412_15" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4412", "version": 1.0, "instances": "56", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4412.tab", "compression": "gz" } ], [ [ "GDS4413.tab" ], { "title": "Long-term pioglitazone effect on triple transgenic model of Alzheimer's disease (3xTg-AD): hippocampus", "description": "Analysis of hippocampus from 10 month-old, triple-transgenic AD females treated with the thiazolidinedione pioglitazone (PIO) for 14 weeks. TZDs exert cognitive benefits early in the AD process. Results provide insight into molecular mechanisms underlying the neuroprotective role of PIO in AD.", "type": "Expression profiling by array", "pubmed_id": "22495349", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE32536", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4413", "description": "pioglitazone", "sample_id": [ "GSM806196", "GSM806197", "GSM806198", "GSM806199", "GSM806200", "GSM806201", "GSM806202", "GSM806203" ], "type": "agent", "id": "GDS4413_1" }, { "dataset_id": "GDS4413", "description": "control", "sample_id": [ "GSM806188", "GSM806189", "GSM806190", "GSM806191", "GSM806192", "GSM806193", "GSM806194", "GSM806195" ], "type": "agent", "id": "GDS4413_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4413", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4413.tab", "compression": "gz" } ], [ [ "GDS4414.tab" ], { "title": "Amyloid Precursor Protein APP family members: adult prefrontal cortex", "description": "Analysis of prefrontal cortex of adult wild-type, APP knockout, APLP2 knockout, and APPs\u03b1 knockin (solely expressing the secreted APPs\u03b1 ectodomain) males. \u03b2-amyloid accumulation is a key trigger for Alzheimer's disease. Results provide insight into physiological functions of APP family members.", "type": "Expression profiling by array", "pubmed_id": "21435241", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE25926", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4414", "description": "wild type", "sample_id": [ "GSM636860", "GSM636861", "GSM636862" ], "type": "genotype/variation", "id": "GDS4414_1" }, { "dataset_id": "GDS4414", "description": "APP knockout", "sample_id": [ "GSM636863", "GSM636864", "GSM636865" ], "type": "genotype/variation", "id": "GDS4414_2" }, { "dataset_id": "GDS4414", "description": "APPsa knockin", "sample_id": [ "GSM636866", "GSM636867", "GSM636868" ], "type": "genotype/variation", "id": "GDS4414_3" }, { "dataset_id": "GDS4414", "description": "APLP2 knockout", "sample_id": [ "GSM636869", "GSM636870", "GSM636871", "GSM636872", "GSM636873", "GSM636874" ], "type": "genotype/variation", "id": "GDS4414_4" }, { "dataset_id": "GDS4414", "description": "back-crossed to C57BL/6 for 6 generations", "sample_id": [ "GSM636860", "GSM636861", "GSM636862", "GSM636863", "GSM636864", "GSM636865", "GSM636866", "GSM636867", "GSM636868", "GSM636869", "GSM636870", "GSM636871" ], "type": "strain", "id": "GDS4414_5" }, { "dataset_id": "GDS4414", "description": "back-crossed to C57BL/6 for 1 generation", "sample_id": [ "GSM636872", "GSM636873", "GSM636874" ], "type": "strain", "id": "GDS4414_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4414", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4414.tab", "compression": "gz" } ], [ [ "GDS4415.tab" ], { "title": "CD-1 neuronal stem cell response to microRNA-128 mimic", "description": "Analysis of E14.5 brain-derived, neuronal stem cell cultures transfected with a miR-128 mimic. miR-128, a brain-specific miRNA, represses Nonsense-Mediated mRNA Decay, thereby controlling numerous transcripts in neural cells. Results provide insight into role of miR-128 in neuron differentiation.", "type": "Expression profiling by array", "pubmed_id": "21596314", "platform": "GPL13455", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "32025", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE28889", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4415", "description": "control", "sample_id": [ "GSM715835", "GSM715836", "GSM715837" ], "type": "protocol", "id": "GDS4415_1" }, { "dataset_id": "GDS4415", "description": "miR-128 transfected", "sample_id": [ "GSM715838", "GSM715839", "GSM715840" ], "type": "protocol", "id": "GDS4415_2" } ], "taxid": "10090", "genes": 26110, "aggregation_function": "mean", "name": "GDS4415", "version": 1.0, "instances": "6", "variables": 26112, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4415.tab", "compression": "gz" } ], [ [ "GDS4416.tab" ], { "title": "Bacterial cell wall component MDP effect on HEK293 cells expressing Crohn's disease-associated NOD2 variant L1007fsinsC receptor: time course", "description": "Temporal analysis of HEK293 cells stably-expressing wildtype NOD2 receptor or variant NOD2L1007fsinsC and treated with muramyl dipeptide (MDP). MDP-induced NOD2 activation induces inflammatory and antibacterial factors. Results provide insight into molecular basis of NOD2-mediated immune response.", "type": "Expression profiling by array", "pubmed_id": "21335489", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE22611", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4416", "description": "NOD2 wild type", "sample_id": [ "GSM560875", "GSM560874", "GSM560873", "GSM560866", "GSM560865", "GSM560864", "GSM560857", "GSM560856", "GSM560855" ], "type": "genotype/variation", "id": "GDS4416_1" }, { "dataset_id": "GDS4416", "description": "NOD2 L1007fsinsC", "sample_id": [ "GSM560878", "GSM560877", "GSM560876", "GSM560869", "GSM560868", "GSM560867", "GSM560860", "GSM560859", "GSM560858" ], "type": "genotype/variation", "id": "GDS4416_2" }, { "dataset_id": "GDS4416", "description": "control", "sample_id": [ "GSM560881", "GSM560880", "GSM560879", "GSM560872", "GSM560871", "GSM560870", "GSM560863", "GSM560862", "GSM560861" ], "type": "genotype/variation", "id": "GDS4416_3" }, { "dataset_id": "GDS4416", "description": "untreated", "sample_id": [ "GSM560857", "GSM560856", "GSM560855", "GSM560860", "GSM560859", "GSM560858", "GSM560863", "GSM560862", "GSM560861" ], "type": "agent", "id": "GDS4416_4" }, { "dataset_id": "GDS4416", "description": "MDP", "sample_id": [ "GSM560872", "GSM560871", "GSM560870", "GSM560869", "GSM560868", "GSM560867", "GSM560866", "GSM560865", "GSM560864", "GSM560875", "GSM560874", "GSM560873", "GSM560878", "GSM560877", "GSM560876", "GSM560881", "GSM560880", "GSM560879" ], "type": "agent", "id": "GDS4416_5" }, { "dataset_id": "GDS4416", "description": "0 hr", "sample_id": [ "GSM560857", "GSM560856", "GSM560855", "GSM560860", "GSM560859", "GSM560858", "GSM560863", "GSM560862", "GSM560861" ], "type": "time", "id": "GDS4416_6" }, { "dataset_id": "GDS4416", "description": "2 hr", "sample_id": [ "GSM560872", "GSM560871", "GSM560870", "GSM560869", "GSM560868", "GSM560867", "GSM560866", "GSM560865", "GSM560864" ], "type": "time", "id": "GDS4416_7" }, { "dataset_id": "GDS4416", "description": "6 hr", "sample_id": [ "GSM560875", "GSM560874", "GSM560873", "GSM560878", "GSM560877", "GSM560876", "GSM560881", "GSM560880", "GSM560879" ], "type": "time", "id": "GDS4416_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4416", "version": 1.0, "instances": "27", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4416.tab", "compression": "gz" } ], [ [ "GDS4417.tab" ], { "title": "Inhaled corticotherapy effect on allergic asthma: bronchial biopsies", "description": "Analysis of bronchial biopsies from allergic asthma (AA) subjects following inhaled corticosteroids (ICS) therapy. ICS represent potent anti-inflammatory controller medications for the treatment of asthma. Results provide insight into molecular mechanisms underlying the pathophysiology of AA.", "type": "Expression profiling by array", "pubmed_id": "15038835", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE15823", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4417", "description": "control", "sample_id": [ "GSM397588", "GSM397589", "GSM397590", "GSM397591" ], "type": "disease state", "id": "GDS4417_1" }, { "dataset_id": "GDS4417", "description": "allergic asthma", "sample_id": [ "GSM397592", "GSM397593", "GSM397594", "GSM397595", "GSM397596", "GSM397597", "GSM397598", "GSM397599" ], "type": "disease state", "id": "GDS4417_2" }, { "dataset_id": "GDS4417", "description": "n/a", "sample_id": [ "GSM397588", "GSM397589", "GSM397590", "GSM397591" ], "type": "agent", "id": "GDS4417_3" }, { "dataset_id": "GDS4417", "description": "untreated", "sample_id": [ "GSM397592", "GSM397593", "GSM397594", "GSM397595" ], "type": "agent", "id": "GDS4417_4" }, { "dataset_id": "GDS4417", "description": "inhaled corticosteroid", "sample_id": [ "GSM397596", "GSM397597", "GSM397598", "GSM397599" ], "type": "agent", "id": "GDS4417_5" }, { "dataset_id": "GDS4417", "description": "bronchial biopsy", "sample_id": [ "GSM397588", "GSM397589", "GSM397590", "GSM397591", "GSM397592", "GSM397593", "GSM397594", "GSM397596", "GSM397597", "GSM397598", "GSM397599" ], "type": "specimen", "id": "GDS4417_6" }, { "dataset_id": "GDS4417", "description": "bronchial biopsies (pool of 6)", "sample_id": [ "GSM397595" ], "type": "specimen", "id": "GDS4417_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS4417", "version": 1.0, "instances": "12", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4417.tab", "compression": "gz" } ], [ [ "GDS4418.tab" ], { "title": "Allergic asthma: bronchial biopsies", "description": "Analysis of bronchial biopsies from allergic asthma (AA) subjects. These results, together with those from GDS4417 (a study with similar specimen collection procedures, but different subjects, GeneChips, data processing), provide insight into molecular mechanisms underlying AA pathophysiology.", "type": "Expression profiling by array", "pubmed_id": "19842841", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE41649", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4418", "description": "control", "sample_id": [ "GSM1020960", "GSM1020961", "GSM1020962", "GSM1020963" ], "type": "disease state", "id": "GDS4418_1" }, { "dataset_id": "GDS4418", "description": "allergic asthma", "sample_id": [ "GSM1020964", "GSM1020965", "GSM1020966", "GSM1020967" ], "type": "disease state", "id": "GDS4418_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4418", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4418.tab", "compression": "gz" } ], [ [ "GDS4419.tab" ], { "title": "Alveolar macrophage response to bacterial endotoxin lipopolysaccharide exposure in vivo", "description": "Analysis of alveolar macrophages purified from bilateral bronchoalveolar lavage after saline instillation into a lung segment followed by LPS instillation into the contralateral lung. Results provide insight into innate immune pathways activated in alveolar macrophages exposed to LPS in vivo.", "type": "Expression profiling by array", "pubmed_id": "22952057", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE40885", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4419", "description": "LPS", "sample_id": [ "GSM1004114", "GSM1004112", "GSM1004110", "GSM1004108", "GSM1004106", "GSM1004104", "GSM1004102" ], "type": "stress", "id": "GDS4419_1" }, { "dataset_id": "GDS4419", "description": "saline", "sample_id": [ "GSM1004113", "GSM1004111", "GSM1004109", "GSM1004107", "GSM1004105", "GSM1004103", "GSM1004101" ], "type": "stress", "id": "GDS4419_2" }, { "dataset_id": "GDS4419", "description": "subject 1", "sample_id": [ "GSM1004102", "GSM1004101" ], "type": "individual", "id": "GDS4419_3" }, { "dataset_id": "GDS4419", "description": "subject 2", "sample_id": [ "GSM1004104", "GSM1004103" ], "type": "individual", "id": "GDS4419_4" }, { "dataset_id": "GDS4419", "description": "subject 3", "sample_id": [ "GSM1004106", "GSM1004105" ], "type": "individual", "id": "GDS4419_5" }, { "dataset_id": "GDS4419", "description": "subject 4", "sample_id": [ "GSM1004108", "GSM1004107" ], "type": "individual", "id": "GDS4419_6" }, { "dataset_id": "GDS4419", "description": "subject 5", "sample_id": [ "GSM1004110", "GSM1004109" ], "type": "individual", "id": "GDS4419_7" }, { "dataset_id": "GDS4419", "description": "subject 6", "sample_id": [ "GSM1004112", "GSM1004111" ], "type": "individual", "id": "GDS4419_8" }, { "dataset_id": "GDS4419", "description": "subject 7", "sample_id": [ "GSM1004114", "GSM1004113" ], "type": "individual", "id": "GDS4419_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4419", "version": 1.0, "instances": "14", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4419.tab", "compression": "gz" } ], [ [ "GDS4420.tab" ], { "title": "Stem cell factor effect on bone marrow-derived mast cells", "description": "Analysis of bone marrow-derived mast cells (MC) treated with interleukin 3 (IL3) or IL3 + stem cell factor (SCF). MCs chronically exposed to SCF have a greatly reduced capacity to degranulate and to generate cytokines in response to antigen. Results provide insight into role of SCF in MC activation.", "type": "Expression profiling by array", "pubmed_id": "22529299", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE35332", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4420", "description": "IL3", "sample_id": [ "GSM866205", "GSM866206", "GSM866207", "GSM866208", "GSM866209", "GSM866210" ], "type": "agent", "id": "GDS4420_1" }, { "dataset_id": "GDS4420", "description": "IL3+ SCF", "sample_id": [ "GSM866217", "GSM866218", "GSM866219", "GSM866220", "GSM866221", "GSM866222" ], "type": "agent", "id": "GDS4420_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4420", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4420.tab", "compression": "gz" } ], [ [ "GDS4421.tab" ], { "title": "Dendritic cell responses to proinflammatory TNF cytokine or pathogenic Trypanosoma brucei antigens", "description": "Analysis of dendritic cells (DCs) treated with TNFa cytokine or T. brucei-derived, variant-specific surface glycoproteins (AnTat1.1 mfVSG or MiTat1.5 sVSG). Results provide insight into the partial maturation signatures of the differentially stimulated DCs.", "type": "Expression profiling by array", "pubmed_id": "21928284", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE28231", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4421", "description": "AnTat1.1 derived-mfVSG", "sample_id": [ "GSM698694" ], "type": "agent", "id": "GDS4421_1" }, { "dataset_id": "GDS4421", "description": "MiTat1.5 derived-sVSG", "sample_id": [ "GSM698693" ], "type": "agent", "id": "GDS4421_2" }, { "dataset_id": "GDS4421", "description": "TNF\u03b1", "sample_id": [ "GSM698695" ], "type": "agent", "id": "GDS4421_3" }, { "dataset_id": "GDS4421", "description": "LPS", "sample_id": [ "GSM698692" ], "type": "agent", "id": "GDS4421_4" }, { "dataset_id": "GDS4421", "description": "control", "sample_id": [ "GSM698691" ], "type": "agent", "id": "GDS4421_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4421", "version": 1.0, "instances": "5", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4421.tab", "compression": "gz" } ], [ [ "GDS4422.tab" ], { "title": "Interleukin-25-induced pulmonary inflammation model: Type 2 myeloid cells and other inflammatory subsets", "description": "Analysis of inflammatory cell types from lungs of 4get females that received daily intra-tracheal injections of IL-25 for 4 days to induce antigen-independent type 2 inflammation. Results provide insight into role of IL-25 and its receptor in innate and adaptive pulmonary type 2 immune responses.", "type": "Expression profiling by array", "pubmed_id": "22543263", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE36392", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4422", "description": "type 2 myeloid", "sample_id": [ "GSM892312", "GSM892313", "GSM892314" ], "type": "cell type", "id": "GDS4422_1" }, { "dataset_id": "GDS4422", "description": "eosinophil", "sample_id": [ "GSM892315", "GSM892316" ], "type": "cell type", "id": "GDS4422_2" }, { "dataset_id": "GDS4422", "description": "macrophage", "sample_id": [ "GSM892317", "GSM892318" ], "type": "cell type", "id": "GDS4422_3" }, { "dataset_id": "GDS4422", "description": "neutrophil", "sample_id": [ "GSM892319", "GSM892320" ], "type": "cell type", "id": "GDS4422_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4422", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4422.tab", "compression": "gz" } ], [ [ "GDS4423.tab" ], { "title": "Lung epithelium response to fungal allergen Alternaria", "description": "Analysis of bronchial brushings of lung epithelium from C57BL/6 females after Alternaria challenge. Alternaria allergen is associated with severe asthma, including life-threatening exacerbations. Results provide insight into the molecular basis of the acute innate airway response to Alternaria.", "type": "Expression profiling by array", "pubmed_id": "22327070", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE34764", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4423", "description": "Alternaria challenge", "sample_id": [ "GSM854806", "GSM854807", "GSM854808" ], "type": "stress", "id": "GDS4423_1" }, { "dataset_id": "GDS4423", "description": "control", "sample_id": [ "GSM854809", "GSM854810", "GSM854811" ], "type": "stress", "id": "GDS4423_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4423", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4423.tab", "compression": "gz" } ], [ [ "GDS4424.tab" ], { "title": "Acute Picornavirus-induced exacerbation in asthmatic children: nasal lavage cells", "description": "Analysis of paired nasal lavage samples obtained from asthmatic children during an acute Picornavirus-induced asthma exacerbation in vivo and 7-14 days later. Severe episodes can be life-threatening. Results provide insight into molecular mechanisms underlying virus-induced asthma exacerbations.", "type": "Expression profiling by array", "pubmed_id": "22112518", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE30326", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4424", "description": "asthma exacerbation", "sample_id": [ "GSM751969", "GSM751971", "GSM751973", "GSM751975", "GSM751977", "GSM751979", "GSM751981", "GSM751983", "GSM751985", "GSM751987", "GSM751989", "GSM751991", "GSM751993", "GSM751995", "GSM751997", "GSM751999" ], "type": "protocol", "id": "GDS4424_1" }, { "dataset_id": "GDS4424", "description": "post-exacerbation", "sample_id": [ "GSM751968", "GSM751970", "GSM751972", "GSM751974", "GSM751976", "GSM751978", "GSM751980", "GSM751982", "GSM751984", "GSM751986", "GSM751988", "GSM751990", "GSM751992", "GSM751994", "GSM751996", "GSM751998" ], "type": "protocol", "id": "GDS4424_2" }, { "dataset_id": "GDS4424", "description": "child 105", "sample_id": [ "GSM751968", "GSM751969" ], "type": "individual", "id": "GDS4424_3" }, { "dataset_id": "GDS4424", "description": "child 106", "sample_id": [ "GSM751970", "GSM751971" ], "type": "individual", "id": "GDS4424_4" }, { "dataset_id": "GDS4424", "description": "child 126", "sample_id": [ "GSM751972", "GSM751973" ], "type": "individual", "id": "GDS4424_5" }, { "dataset_id": "GDS4424", "description": "child 131", "sample_id": [ "GSM751974", "GSM751975" ], "type": "individual", "id": "GDS4424_6" }, { "dataset_id": "GDS4424", "description": "child 132", "sample_id": [ "GSM751976", "GSM751977" ], "type": "individual", "id": "GDS4424_7" }, { "dataset_id": "GDS4424", "description": "child 149", "sample_id": [ "GSM751978", "GSM751979" ], "type": "individual", "id": "GDS4424_8" }, { "dataset_id": "GDS4424", "description": "child 150", "sample_id": [ "GSM751980", "GSM751981" ], "type": "individual", "id": "GDS4424_9" }, { "dataset_id": "GDS4424", "description": "child 151", "sample_id": [ "GSM751982", "GSM751983" ], "type": "individual", "id": "GDS4424_10" }, { "dataset_id": "GDS4424", "description": "child 156", "sample_id": [ "GSM751984", "GSM751985" ], "type": "individual", "id": "GDS4424_11" }, { "dataset_id": "GDS4424", "description": "child 158", "sample_id": [ "GSM751986", "GSM751987" ], "type": "individual", "id": "GDS4424_12" }, { "dataset_id": "GDS4424", "description": "child 160", "sample_id": [ "GSM751988", "GSM751989" ], "type": "individual", "id": "GDS4424_13" }, { "dataset_id": "GDS4424", "description": "child 161", "sample_id": [ "GSM751990", "GSM751991" ], "type": "individual", "id": "GDS4424_14" }, { "dataset_id": "GDS4424", "description": "child 163", "sample_id": [ "GSM751992", "GSM751993" ], "type": "individual", "id": "GDS4424_15" }, { "dataset_id": "GDS4424", "description": "child 165", "sample_id": [ "GSM751994", "GSM751995" ], "type": "individual", "id": "GDS4424_16" }, { "dataset_id": "GDS4424", "description": "child 166", "sample_id": [ "GSM751996", "GSM751997" ], "type": "individual", "id": "GDS4424_17" }, { "dataset_id": "GDS4424", "description": "child 167", "sample_id": [ "GSM751998", "GSM751999" ], "type": "individual", "id": "GDS4424_18" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4424", "version": 1.0, "instances": "32", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4424.tab", "compression": "gz" } ], [ [ "GDS4425.tab" ], { "title": "Severe asthma: circulating CD4+ and CD8+ T-cells", "description": "Analysis of circulating CD4+ and CD8+ T-cells from adult patients with severe or nonsevere asthma. CD4+ T cells contribute to the development and maintenance of an inflammatory response in asthmatic patients. Results provide insight into the role of CD8+ T cells in severe asthma.", "type": "Expression profiling by array", "pubmed_id": "21917308", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE31773", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4425", "description": "severe asthma", "sample_id": [ "GSM788323", "GSM788324", "GSM788325", "GSM788326", "GSM788327", "GSM788328", "GSM788329", "GSM788330", "GSM788311", "GSM788312", "GSM788313", "GSM788314", "GSM788315", "GSM788316", "GSM788317", "GSM788318" ], "type": "disease state", "id": "GDS4425_1" }, { "dataset_id": "GDS4425", "description": "non-severe asthma", "sample_id": [ "GSM788319", "GSM788320", "GSM788321", "GSM788322", "GSM788299", "GSM788300", "GSM788301", "GSM788302" ], "type": "disease state", "id": "GDS4425_2" }, { "dataset_id": "GDS4425", "description": "healthy control", "sample_id": [ "GSM788331", "GSM788332", "GSM788333", "GSM788334", "GSM788335", "GSM788336", "GSM788337", "GSM788338", "GSM788303", "GSM788304", "GSM788305", "GSM788306", "GSM788307", "GSM788308", "GSM788309", "GSM788310" ], "type": "disease state", "id": "GDS4425_3" }, { "dataset_id": "GDS4425", "description": "CD4+ T-cells", "sample_id": [ "GSM788303", "GSM788304", "GSM788305", "GSM788306", "GSM788307", "GSM788308", "GSM788309", "GSM788310", "GSM788299", "GSM788300", "GSM788301", "GSM788302", "GSM788311", "GSM788312", "GSM788313", "GSM788314", "GSM788315", "GSM788316", "GSM788317", "GSM788318" ], "type": "cell type", "id": "GDS4425_4" }, { "dataset_id": "GDS4425", "description": "CD8+ T-cells", "sample_id": [ "GSM788331", "GSM788332", "GSM788333", "GSM788334", "GSM788335", "GSM788336", "GSM788337", "GSM788338", "GSM788319", "GSM788320", "GSM788321", "GSM788322", "GSM788323", "GSM788324", "GSM788325", "GSM788326", "GSM788327", "GSM788328", "GSM788329", "GSM788330" ], "type": "cell type", "id": "GDS4425_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4425", "version": 1.0, "instances": "40", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4425.tab", "compression": "gz" } ], [ [ "GDS4426.tab" ], { "title": "Epidermolysis Bullosa Simplex: epidermis", "description": "Analysis of epidermal punch biopsies (with minimal dermis amounts) from six EBS patients. Most EBS cases are caused by defects in the genes encoding intermediate filament proteins keratin 5 (KRT5) and keratin 14 (KRT14). Results provide further insight into the molecular basis of EBS.", "type": "Expression profiling by array", "pubmed_id": "21877134", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE28315", "order": "none", "update_date": "Mar 12 2013", "subsets": [ { "dataset_id": "GDS4426", "description": "control", "sample_id": [ "GSM700422", "GSM700423", "GSM700424", "GSM700425", "GSM700426", "GSM700427" ], "type": "disease state", "id": "GDS4426_1" }, { "dataset_id": "GDS4426", "description": "epidermolysis bullosa simplex", "sample_id": [ "GSM700428", "GSM700429", "GSM700430", "GSM700431", "GSM700432", "GSM700433" ], "type": "disease state", "id": "GDS4426_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4426", "version": 1.0, "instances": "12", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4426.tab", "compression": "gz" } ], [ [ "GDS4427.tab" ], { "title": "Niemann-Pick Type C disease liver: time course", "description": "Analysis of liver across 3 age groups of Npc1\u2212/\u2212 Balb/c females with Niemann-Pick Type C (NPC) disease. NPC is a neurodegenerative, lysosomal disorder caused by Npc1 or Npc2 gene dysfunction. Results provide insight into the molecular mechanisms underlying NPC progression.", "type": "Expression profiling by array", "pubmed_id": "23094108", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE39621", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4427", "description": "Npc1-/-", "sample_id": [ "GSM973267", "GSM973268", "GSM973271", "GSM973272", "GSM973275", "GSM973276" ], "type": "genotype/variation", "id": "GDS4427_1" }, { "dataset_id": "GDS4427", "description": "Npc1+/- control", "sample_id": [ "GSM973265", "GSM973266", "GSM973269", "GSM973270", "GSM973273", "GSM973274" ], "type": "genotype/variation", "id": "GDS4427_2" }, { "dataset_id": "GDS4427", "description": "day 20", "sample_id": [ "GSM973265", "GSM973267" ], "type": "age", "id": "GDS4427_3" }, { "dataset_id": "GDS4427", "description": "day 25", "sample_id": [ "GSM973266", "GSM973268" ], "type": "age", "id": "GDS4427_4" }, { "dataset_id": "GDS4427", "description": "day 54", "sample_id": [ "GSM973269", "GSM973271" ], "type": "age", "id": "GDS4427_5" }, { "dataset_id": "GDS4427", "description": "day 55", "sample_id": [ "GSM973270", "GSM973272" ], "type": "age", "id": "GDS4427_6" }, { "dataset_id": "GDS4427", "description": "day 67", "sample_id": [ "GSM973273", "GSM973274", "GSM973275" ], "type": "age", "id": "GDS4427_7" }, { "dataset_id": "GDS4427", "description": "day 71", "sample_id": [ "GSM973276" ], "type": "age", "id": "GDS4427_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4427", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4427.tab", "compression": "gz" } ], [ [ "GDS4428.tab" ], { "title": "Niemann-Pick Type C disease spleen: time course", "description": "Analysis of spleen across 3 age groups of Npc1\u2212/\u2212 Balb/c females with Niemann-Pick Type C (NPC) disease. NPC is a neurodegenerative, lysosomal disorder caused by Npc1 or Npc2 gene dysfunction. Results provide insight into the molecular mechanisms underlying NPC progression.", "type": "Expression profiling by array", "pubmed_id": "23094108", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE39621", "order": "none", "update_date": "Mar 11 2013", "subsets": [ { "dataset_id": "GDS4428", "description": "Npc1-/-", "sample_id": [ "GSM973279", "GSM973280", "GSM973283", "GSM973284", "GSM973287", "GSM973288" ], "type": "genotype/variation", "id": "GDS4428_1" }, { "dataset_id": "GDS4428", "description": "Npc1+/- control", "sample_id": [ "GSM973277", "GSM973278", "GSM973281", "GSM973282", "GSM973285", "GSM973286" ], "type": "genotype/variation", "id": "GDS4428_2" }, { "dataset_id": "GDS4428", "description": "day 20", "sample_id": [ "GSM973277", "GSM973279" ], "type": "age", "id": "GDS4428_3" }, { "dataset_id": "GDS4428", "description": "day 25", "sample_id": [ "GSM973278", "GSM973280" ], "type": "age", "id": "GDS4428_4" }, { "dataset_id": "GDS4428", "description": "day 54", "sample_id": [ "GSM973281", "GSM973283" ], "type": "age", "id": "GDS4428_5" }, { "dataset_id": "GDS4428", "description": "day 55", "sample_id": [ "GSM973282", "GSM973284" ], "type": "age", "id": "GDS4428_6" }, { "dataset_id": "GDS4428", "description": "day 67", "sample_id": [ "GSM973285", "GSM973286", "GSM973287" ], "type": "age", "id": "GDS4428_7" }, { "dataset_id": "GDS4428", "description": "day 71", "sample_id": [ "GSM973288" ], "type": "age", "id": "GDS4428_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4428", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4428.tab", "compression": "gz" } ], [ [ "GDS4429.tab" ], { "title": "Fetal brain response to maternal immune activation induced by lipopolysaccharide", "description": "Analysis of fetal brains following maternal immune activation (MIA) induced by treating pregnant dams with lipopolysaccharide. MIA is a risk factor for the development of schizophrenia and autism. Results provide insight into the effect of MIA on the fetal brain at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "22310921", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE34058", "order": "none", "update_date": "May 08 2013", "subsets": [ { "dataset_id": "GDS4429", "description": "saline control", "sample_id": [ "GSM841131", "GSM841132", "GSM841133", "GSM841134", "GSM841135", "GSM841136", "GSM841137", "GSM841138", "GSM841139", "GSM841140" ], "type": "agent", "id": "GDS4429_1" }, { "dataset_id": "GDS4429", "description": "LPS 0.25mg/kg", "sample_id": [ "GSM841141", "GSM841142", "GSM841143", "GSM841144", "GSM841145", "GSM841146", "GSM841147", "GSM841148", "GSM841149" ], "type": "agent", "id": "GDS4429_2" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4429", "version": 1.0, "instances": "19", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4429.tab", "compression": "gz" } ], [ [ "GDS443.tab" ], { "title": "Midgut metamorphosis time course", "description": "Temporal analysis of midgut development. Examined 11 time points between 18 hours before puparium formation (BPF) to 12 hours after puparium formation (APF) as larval midgut is replaced by adult midgut in Canton S strain.", "type": "Expression profiling by array", "pubmed_id": "12852852", "platform": "GPL248", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20000", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "33", "value_type": "log ratio", "reference_series": "GSE543", "order": "ordered", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS443", "description": "18 hour BPF", "sample_id": [ "GSM4585", "GSM4586", "GSM4587" ], "type": "development stage", "id": "GDS443_1" }, { "dataset_id": "GDS443", "description": "4 hour BPF", "sample_id": [ "GSM4588", "GSM4589", "GSM4590" ], "type": "development stage", "id": "GDS443_2" }, { "dataset_id": "GDS443", "description": "0 hour PF", "sample_id": [ "GSM4591", "GSM4592", "GSM4593" ], "type": "development stage", "id": "GDS443_3" }, { "dataset_id": "GDS443", "description": "2 hour APF", "sample_id": [ "GSM4594", "GSM4595", "GSM4596" ], "type": "development stage", "id": "GDS443_4" }, { "dataset_id": "GDS443", "description": "3 hour APF", "sample_id": [ "GSM4597", "GSM4598", "GSM4599" ], "type": "development stage", "id": "GDS443_5" }, { "dataset_id": "GDS443", "description": "4 hour APF", "sample_id": [ "GSM4600", "GSM4601", "GSM4602" ], "type": "development stage", "id": "GDS443_6" }, { "dataset_id": "GDS443", "description": "5 hour APF", "sample_id": [ "GSM4603", "GSM4604", "GSM4605" ], "type": "development stage", "id": "GDS443_7" }, { "dataset_id": "GDS443", "description": "6 hour APF", "sample_id": [ "GSM4606", "GSM4607", "GSM4608" ], "type": "development stage", "id": "GDS443_8" }, { "dataset_id": "GDS443", "description": "8 hour APF", "sample_id": [ "GSM4609", "GSM4610", "GSM4611" ], "type": "development stage", "id": "GDS443_9" }, { "dataset_id": "GDS443", "description": "10 hour APF", "sample_id": [ "GSM4612", "GSM4613", "GSM4614" ], "type": "development stage", "id": "GDS443_10" }, { "dataset_id": "GDS443", "description": "12 hour APF", "sample_id": [ "GSM4615", "GSM4616", "GSM4617" ], "type": "development stage", "id": "GDS443_11" } ], "taxid": "7227", "genes": 12709, "aggregation_function": "mean", "name": "GDS443", "version": 1.0, "instances": "33", "variables": 12711, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS443.tab", "compression": "gz" } ], [ [ "GDS4430.tab" ], { "title": "16p11.2 copy number variation models: various brain regions", "description": "Analysis of brain regions of C57BL/6N:129Sv animals harboring a df/+ deletion or dp/+ duplication in the chromosomal region corresponding to 16p11.2 in humans. Recurrent copy number variations (CNVs) of human 16p11.2 are associated with a variety of developmental/neurocognitive syndromes.", "type": "Expression profiling by array", "pubmed_id": "21969575", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "transformed count", "reference_series": "GSE32012", "order": "none", "update_date": "May 13 2013", "subsets": [ { "dataset_id": "GDS4430", "description": "brain stem", "sample_id": [ "GSM792694", "GSM792717", "GSM792693", "GSM792713", "GSM792724", "GSM792700", "GSM792705", "GSM792721" ], "type": "tissue", "id": "GDS4430_1" }, { "dataset_id": "GDS4430", "description": "cerebellum", "sample_id": [ "GSM792695", "GSM792696", "GSM792718", "GSM792709", "GSM792714", "GSM792725", "GSM792726", "GSM792701", "GSM792702", "GSM792706", "GSM792722" ], "type": "tissue", "id": "GDS4430_2" }, { "dataset_id": "GDS4430", "description": "cortex", "sample_id": [ "GSM792697", "GSM792698", "GSM792719", "GSM792710", "GSM792715", "GSM792727", "GSM792728", "GSM792703", "GSM792707" ], "type": "tissue", "id": "GDS4430_3" }, { "dataset_id": "GDS4430", "description": "olfactory", "sample_id": [ "GSM792699", "GSM792720", "GSM792711", "GSM792712", "GSM792716", "GSM792729", "GSM792704", "GSM792708", "GSM792723" ], "type": "tissue", "id": "GDS4430_4" }, { "dataset_id": "GDS4430", "description": "df/+ deletion - 1 copy", "sample_id": [ "GSM792694", "GSM792717", "GSM792695", "GSM792696", "GSM792718", "GSM792697", "GSM792698", "GSM792719", "GSM792699", "GSM792720" ], "type": "genotype/variation", "id": "GDS4430_5" }, { "dataset_id": "GDS4430", "description": "+/+ wild type - 2 copies", "sample_id": [ "GSM792693", "GSM792713", "GSM792724", "GSM792709", "GSM792714", "GSM792725", "GSM792726", "GSM792710", "GSM792715", "GSM792727", "GSM792728", "GSM792711", "GSM792712", "GSM792716", "GSM792729" ], "type": "genotype/variation", "id": "GDS4430_6" }, { "dataset_id": "GDS4430", "description": "dp/+ duplication - 3 copies", "sample_id": [ "GSM792700", "GSM792705", "GSM792721", "GSM792701", "GSM792702", "GSM792706", "GSM792722", "GSM792703", "GSM792707", "GSM792704", "GSM792708", "GSM792723" ], "type": "genotype/variation", "id": "GDS4430_7" }, { "dataset_id": "GDS4430", "description": "62", "sample_id": [ "GSM792709", "GSM792710", "GSM792711", "GSM792712", "GSM792693" ], "type": "individual", "id": "GDS4430_8" }, { "dataset_id": "GDS4430", "description": "63", "sample_id": [ "GSM792713", "GSM792714", "GSM792715", "GSM792716" ], "type": "individual", "id": "GDS4430_9" }, { "dataset_id": "GDS4430", "description": "88", "sample_id": [ "GSM792717", "GSM792718", "GSM792719", "GSM792720" ], "type": "individual", "id": "GDS4430_10" }, { "dataset_id": "GDS4430", "description": "89", "sample_id": [ "GSM792721", "GSM792722", "GSM792723" ], "type": "individual", "id": "GDS4430_11" }, { "dataset_id": "GDS4430", "description": "90", "sample_id": [ "GSM792724", "GSM792725", "GSM792726", "GSM792727", "GSM792728", "GSM792729" ], "type": "individual", "id": "GDS4430_12" }, { "dataset_id": "GDS4430", "description": "101", "sample_id": [ "GSM792694", "GSM792695", "GSM792696", "GSM792697", "GSM792698", "GSM792699" ], "type": "individual", "id": "GDS4430_13" }, { "dataset_id": "GDS4430", "description": "102", "sample_id": [ "GSM792700", "GSM792701", "GSM792702", "GSM792703", "GSM792704" ], "type": "individual", "id": "GDS4430_14" }, { "dataset_id": "GDS4430", "description": "121", "sample_id": [ "GSM792705", "GSM792706", "GSM792707", "GSM792708" ], "type": "individual", "id": "GDS4430_15" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4430", "version": 1.0, "instances": "37", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4430.tab", "compression": "gz" } ], [ [ "GDS4431.tab" ], { "title": "Autistic children and their father\u2019s age: peripheral blood lymphocytes", "description": "Analysis of peripheral blood lymphocytes of autistic and non-autistic children. Correlation among gene expression changes, paternal age, and autism examined.", "type": "Expression profiling by array", "pubmed_id": "21379579", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "146", "value_type": "count", "reference_series": "GSE25507", "order": "none", "update_date": "May 18 2013", "subsets": [ { "dataset_id": "GDS4431", "description": "control", "sample_id": [ "GSM627071", "GSM627072", "GSM627073", "GSM627074", "GSM627075", "GSM627076", "GSM627077", "GSM627078", "GSM627079", "GSM627080", "GSM627081", "GSM627082", "GSM627083", "GSM627084", "GSM627085", "GSM627086", "GSM627087", "GSM627088", "GSM627089", "GSM627090", "GSM627091", "GSM627092", "GSM627093", "GSM627094", "GSM627095", "GSM627096", "GSM627097", "GSM627098", "GSM627099", "GSM627100", "GSM627101", "GSM627102", "GSM627103", "GSM627104", "GSM627105", "GSM627106", "GSM627107", "GSM627108", "GSM627109", "GSM627110", "GSM627111", "GSM627112", "GSM627113", "GSM627114", "GSM627115", "GSM627116", "GSM627117", "GSM627118", "GSM627119", "GSM627120", "GSM627121", "GSM627122", "GSM627123", "GSM627124", "GSM627125", "GSM627126", "GSM627127", "GSM627128", "GSM627129", "GSM627130", "GSM627131", "GSM627132", "GSM627133", "GSM627134", "GSM627136", "GSM627137", "GSM627148", "GSM627174", "GSM627177" ], "type": "disease state", "id": "GDS4431_1" }, { "dataset_id": "GDS4431", "description": "autism", "sample_id": [ "GSM627135", "GSM627138", "GSM627139", "GSM627140", "GSM627141", "GSM627142", "GSM627143", "GSM627144", "GSM627145", "GSM627146", "GSM627147", "GSM627149", "GSM627150", "GSM627151", "GSM627152", "GSM627153", "GSM627154", "GSM627155", "GSM627156", "GSM627157", "GSM627158", "GSM627159", "GSM627160", "GSM627161", "GSM627162", "GSM627163", "GSM627164", "GSM627165", "GSM627166", "GSM627167", "GSM627168", "GSM627169", "GSM627170", "GSM627171", "GSM627172", "GSM627173", "GSM627175", "GSM627176", "GSM627178", "GSM627179", "GSM627180", "GSM627181", "GSM627182", "GSM627183", "GSM627184", "GSM627185", "GSM627186", "GSM627187", "GSM627188", "GSM627189", "GSM627190", "GSM627191", "GSM627192", "GSM627193", "GSM627194", "GSM627195", "GSM627196", "GSM627197", "GSM627198", "GSM627199", "GSM627200", "GSM627201", "GSM627202", "GSM627203", "GSM627204", "GSM627205", "GSM627206", "GSM627207", "GSM627208", "GSM627209", "GSM627210", "GSM627211", "GSM627212", "GSM627213", "GSM627214", "GSM627215", "GSM627216" ], "type": "disease state", "id": "GDS4431_2" }, { "dataset_id": "GDS4431", "description": "paternal age: 17", "sample_id": [ "GSM627128" ], "type": "age", "id": "GDS4431_3" }, { "dataset_id": "GDS4431", "description": "paternal age: 19", "sample_id": [ "GSM627212", "GSM627216" ], "type": "age", "id": "GDS4431_4" }, { "dataset_id": "GDS4431", "description": "paternal age: 20", "sample_id": [ "GSM627110" ], "type": "age", "id": "GDS4431_5" }, { "dataset_id": "GDS4431", "description": "paternal age: 21", "sample_id": [ "GSM627190" ], "type": "age", "id": "GDS4431_6" }, { "dataset_id": "GDS4431", "description": "paternal age: 22", "sample_id": [ "GSM627107", "GSM627132", "GSM627169" ], "type": "age", "id": "GDS4431_7" }, { "dataset_id": "GDS4431", "description": "paternal age: 23", "sample_id": [ "GSM627103", "GSM627167", "GSM627192", "GSM627203" ], "type": "age", "id": "GDS4431_8" }, { "dataset_id": "GDS4431", "description": "paternal age: 24", "sample_id": [ "GSM627101", "GSM627114", "GSM627130", "GSM627134", "GSM627137", "GSM627148" ], "type": "age", "id": "GDS4431_9" }, { "dataset_id": "GDS4431", "description": "paternal age: 25", "sample_id": [ "GSM627071", "GSM627118", "GSM627151", "GSM627163", "GSM627211" ], "type": "age", "id": "GDS4431_10" }, { "dataset_id": "GDS4431", "description": "paternal age: 26", "sample_id": [ "GSM627094", "GSM627115", "GSM627122", "GSM627125", "GSM627135", "GSM627170", "GSM627171", "GSM627178", "GSM627199", "GSM627209" ], "type": "age", "id": "GDS4431_11" }, { "dataset_id": "GDS4431", "description": "paternal age: 27", "sample_id": [ "GSM627140", "GSM627149", "GSM627174", "GSM627213" ], "type": "age", "id": "GDS4431_12" }, { "dataset_id": "GDS4431", "description": "paternal age: 28", "sample_id": [ "GSM627102", "GSM627147", "GSM627195", "GSM627204", "GSM627207" ], "type": "age", "id": "GDS4431_13" }, { "dataset_id": "GDS4431", "description": "paternal age: 29", "sample_id": [ "GSM627073", "GSM627078", "GSM627090", "GSM627099", "GSM627105", "GSM627108", "GSM627117", "GSM627121", "GSM627126", "GSM627127", "GSM627146", "GSM627156", "GSM627157", "GSM627188", "GSM627201" ], "type": "age", "id": "GDS4431_14" }, { "dataset_id": "GDS4431", "description": "paternal age: 30", "sample_id": [ "GSM627076", "GSM627087", "GSM627089", "GSM627092", "GSM627173", "GSM627179", "GSM627197", "GSM627208" ], "type": "age", "id": "GDS4431_15" }, { "dataset_id": "GDS4431", "description": "paternal age: 31", "sample_id": [ "GSM627081", "GSM627091", "GSM627097", "GSM627136", "GSM627153", "GSM627155", "GSM627165", "GSM627168", "GSM627183", "GSM627215" ], "type": "age", "id": "GDS4431_16" }, { "dataset_id": "GDS4431", "description": "paternal age: 32", "sample_id": [ "GSM627072", "GSM627080", "GSM627086", "GSM627088", "GSM627109", "GSM627111", "GSM627113", "GSM627133", "GSM627142", "GSM627144", "GSM627158", "GSM627177", "GSM627182", "GSM627196", "GSM627202" ], "type": "age", "id": "GDS4431_17" }, { "dataset_id": "GDS4431", "description": "paternal age: 33", "sample_id": [ "GSM627095", "GSM627141", "GSM627143", "GSM627145", "GSM627152", "GSM627159", "GSM627200" ], "type": "age", "id": "GDS4431_18" }, { "dataset_id": "GDS4431", "description": "paternal age: 34", "sample_id": [ "GSM627079", "GSM627164" ], "type": "age", "id": "GDS4431_19" }, { "dataset_id": "GDS4431", "description": "paternal age: 35", "sample_id": [ "GSM627074", "GSM627077", "GSM627082", "GSM627093", "GSM627120", "GSM627124", "GSM627138", "GSM627175" ], "type": "age", "id": "GDS4431_20" }, { "dataset_id": "GDS4431", "description": "paternal age: 36", "sample_id": [ "GSM627075", "GSM627085", "GSM627139", "GSM627150", "GSM627166", "GSM627181", "GSM627186", "GSM627205" ], "type": "age", "id": "GDS4431_21" }, { "dataset_id": "GDS4431", "description": "paternal age: 37", "sample_id": [ "GSM627119", "GSM627180", "GSM627214" ], "type": "age", "id": "GDS4431_22" }, { "dataset_id": "GDS4431", "description": "paternal age: 38", "sample_id": [ "GSM627172", "GSM627184" ], "type": "age", "id": "GDS4431_23" }, { "dataset_id": "GDS4431", "description": "paternal age: 39", "sample_id": [ "GSM627116", "GSM627193" ], "type": "age", "id": "GDS4431_24" }, { "dataset_id": "GDS4431", "description": "paternal age: 40", "sample_id": [ "GSM627084", "GSM627096", "GSM627191" ], "type": "age", "id": "GDS4431_25" }, { "dataset_id": "GDS4431", "description": "paternal age: 41", "sample_id": [ "GSM627100", "GSM627112", "GSM627176", "GSM627194" ], "type": "age", "id": "GDS4431_26" }, { "dataset_id": "GDS4431", "description": "paternal age: 42", "sample_id": [ "GSM627154" ], "type": "age", "id": "GDS4431_27" }, { "dataset_id": "GDS4431", "description": "paternal age: 43", "sample_id": [ "GSM627187" ], "type": "age", "id": "GDS4431_28" }, { "dataset_id": "GDS4431", "description": "paternal age: 44", "sample_id": [ "GSM627198" ], "type": "age", "id": "GDS4431_29" }, { "dataset_id": "GDS4431", "description": "paternal age: 46", "sample_id": [ "GSM627160", "GSM627185" ], "type": "age", "id": "GDS4431_30" }, { "dataset_id": "GDS4431", "description": "paternal age: 49", "sample_id": [ "GSM627206" ], "type": "age", "id": "GDS4431_31" }, { "dataset_id": "GDS4431", "description": "paternal age: n/a", "sample_id": [ "GSM627083", "GSM627098", "GSM627104", "GSM627106", "GSM627123", "GSM627129", "GSM627131", "GSM627161", "GSM627162", "GSM627189", "GSM627210" ], "type": "age", "id": "GDS4431_32" }, { "dataset_id": "GDS4431", "description": "batch 1", "sample_id": [ "GSM627128", "GSM627216", "GSM627110", "GSM627190", "GSM627132", "GSM627167", "GSM627114", "GSM627134", "GSM627137", "GSM627148", "GSM627071", "GSM627094", "GSM627122", "GSM627171", "GSM627209", "GSM627174", "GSM627213", "GSM627102", "GSM627073", "GSM627108", "GSM627126", "GSM627157", "GSM627201", "GSM627087", "GSM627089", "GSM627092", "GSM627197", "GSM627136", "GSM627215", "GSM627072", "GSM627080", "GSM627088", "GSM627109", "GSM627111", "GSM627113", "GSM627133", "GSM627144", "GSM627158", "GSM627177", "GSM627196", "GSM627095", "GSM627141", "GSM627143", "GSM627145", "GSM627152", "GSM627200", "GSM627164", "GSM627082", "GSM627138", "GSM627150", "GSM627166", "GSM627186", "GSM627119", "GSM627214", "GSM627172", "GSM627116", "GSM627191", "GSM627100", "GSM627112", "GSM627160", "GSM627185", "GSM627083", "GSM627098", "GSM627104", "GSM627131", "GSM627161", "GSM627162", "GSM627210" ], "type": "other", "id": "GDS4431_33" }, { "dataset_id": "GDS4431", "description": "batch 2", "sample_id": [ "GSM627212", "GSM627107", "GSM627169", "GSM627103", "GSM627192", "GSM627203", "GSM627101", "GSM627130", "GSM627118", "GSM627151", "GSM627163", "GSM627211", "GSM627115", "GSM627125", "GSM627135", "GSM627170", "GSM627178", "GSM627199", "GSM627140", "GSM627149", "GSM627147", "GSM627195", "GSM627204", "GSM627207", "GSM627078", "GSM627090", "GSM627099", "GSM627105", "GSM627117", "GSM627121", "GSM627127", "GSM627146", "GSM627156", "GSM627188", "GSM627076", "GSM627173", "GSM627179", "GSM627208", "GSM627081", "GSM627091", "GSM627097", "GSM627153", "GSM627155", "GSM627165", "GSM627168", "GSM627183", "GSM627086", "GSM627142", "GSM627182", "GSM627202", "GSM627159", "GSM627079", "GSM627074", "GSM627077", "GSM627093", "GSM627120", "GSM627124", "GSM627175", "GSM627075", "GSM627085", "GSM627139", "GSM627181", "GSM627205", "GSM627180", "GSM627184", "GSM627193", "GSM627084", "GSM627096", "GSM627176", "GSM627194", "GSM627154", "GSM627187", "GSM627198", "GSM627206", "GSM627106", "GSM627123", "GSM627129", "GSM627189" ], "type": "other", "id": "GDS4431_34" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4431", "version": 1.0, "instances": "146", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4431.tab", "compression": "gz" } ], [ [ "GDS4432.tab" ], { "title": "Rough attenuated Brucella suis strain infection effect on macrophage cell line: time course", "description": "Analysis of J774.A1 macrophage cells for up to 48 hours following infection with S1330-smooth virulent or VTRS1-rough attenuated Brucella suis strain. S1330 prevents macrophage cell death while VTRS1 induces it. Results provide insight into the molecular basis of VTRS1-induced macrophage cell death.", "type": "Expression profiling by array", "pubmed_id": "21464087", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE21117", "order": "none", "update_date": "May 19 2013", "subsets": [ { "dataset_id": "GDS4432", "description": "Brucella suis S1330", "sample_id": [ "GSM528208", "GSM528207", "GSM528206", "GSM528214", "GSM528213", "GSM528212", "GSM528205", "GSM528204", "GSM528203", "GSM528211", "GSM528210", "GSM528209", "GSM528200", "GSM528199", "GSM528198", "GSM528197", "GSM528196", "GSM528195" ], "type": "infection", "id": "GDS4432_1" }, { "dataset_id": "GDS4432", "description": "Brucella suis VTRS1", "sample_id": [ "GSM528230", "GSM528229", "GSM528228", "GSM528237", "GSM528236", "GSM528235", "GSM528227", "GSM528226", "GSM528225", "GSM528234", "GSM528233", "GSM528232", "GSM528224", "GSM528223", "GSM528222", "GSM528220", "GSM528219", "GSM528218" ], "type": "infection", "id": "GDS4432_2" }, { "dataset_id": "GDS4432", "description": "no infection control", "sample_id": [ "GSM528217", "GSM528216", "GSM528194", "GSM528193", "GSM528192", "GSM528215" ], "type": "infection", "id": "GDS4432_3" }, { "dataset_id": "GDS4432", "description": "post infection: n/a", "sample_id": [ "GSM528192", "GSM528193", "GSM528194", "GSM528215", "GSM528216", "GSM528217" ], "type": "time", "id": "GDS4432_4" }, { "dataset_id": "GDS4432", "description": "post infection: hour 1", "sample_id": [ "GSM528195", "GSM528196", "GSM528197", "GSM528218", "GSM528219", "GSM528220" ], "type": "time", "id": "GDS4432_5" }, { "dataset_id": "GDS4432", "description": "post infection: hour 2", "sample_id": [ "GSM528222", "GSM528223", "GSM528224", "GSM528198", "GSM528199", "GSM528200" ], "type": "time", "id": "GDS4432_6" }, { "dataset_id": "GDS4432", "description": "post infection: hour 4", "sample_id": [ "GSM528225", "GSM528226", "GSM528227", "GSM528203", "GSM528204", "GSM528205" ], "type": "time", "id": "GDS4432_7" }, { "dataset_id": "GDS4432", "description": "post infection: hour 8", "sample_id": [ "GSM528228", "GSM528229", "GSM528230", "GSM528206", "GSM528207", "GSM528208" ], "type": "time", "id": "GDS4432_8" }, { "dataset_id": "GDS4432", "description": "post infection: hour 24", "sample_id": [ "GSM528232", "GSM528233", "GSM528234", "GSM528209", "GSM528210", "GSM528211" ], "type": "time", "id": "GDS4432_9" }, { "dataset_id": "GDS4432", "description": "post infection: hour 48", "sample_id": [ "GSM528235", "GSM528236", "GSM528237", "GSM528212", "GSM528213", "GSM528214" ], "type": "time", "id": "GDS4432_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4432", "version": 1.0, "instances": "42", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4432.tab", "compression": "gz" } ], [ [ "GDS4433.tab" ], { "title": "MyD88 and TRIF deficient spleen response to septic peritonitis", "description": "Analysis of spleens of MyD88 and TRIF double null mutants following surgical induction of septic peritonitis. MyD88 and TRIF are involved in innate immune responses that combat bacterial infections. Results provide insight into the role of MyD88 and TRIF in the pathogenesis of septic peritonitis.", "type": "Expression profiling by array", "pubmed_id": "21628330", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE24327", "order": "none", "update_date": "May 19 2013", "subsets": [ { "dataset_id": "GDS4433", "description": "septic peritonitis", "sample_id": [ "GSM599841", "GSM599842", "GSM599843", "GSM599844", "GSM599845", "GSM599846", "GSM599847", "GSM599848" ], "type": "disease state", "id": "GDS4433_1" }, { "dataset_id": "GDS4433", "description": "control", "sample_id": [ "GSM599849", "GSM599850", "GSM599851", "GSM599852" ], "type": "disease state", "id": "GDS4433_2" }, { "dataset_id": "GDS4433", "description": "TLR-deficient Myd88-/-;TrifLps2/Lps2", "sample_id": [ "GSM599841", "GSM599842", "GSM599843", "GSM599844" ], "type": "genotype/variation", "id": "GDS4433_3" }, { "dataset_id": "GDS4433", "description": "wild type", "sample_id": [ "GSM599845", "GSM599846", "GSM599847", "GSM599848", "GSM599849", "GSM599850", "GSM599851", "GSM599852" ], "type": "genotype/variation", "id": "GDS4433_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4433", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4433.tab", "compression": "gz" } ], [ [ "GDS4434.tab" ], { "title": "Tuberous sclerosis complex 1 deficient CD4 T cell response to T cell receptor stimulation", "description": "Analysis of Tuberous sclerosis complex 1 (Tsc1) deficient CD4 T cells after T cell receptor stimulation using anti-CD3-CD28. Tsc1 is an mTOR signaling modulator involved in naive T cell quiescence and immune homeostasis regulation. Results provide insight into the role of Tsc1 in T cell quiescence.", "type": "Expression profiling by array", "pubmed_id": "21765414", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE29797", "order": "none", "update_date": "Jun 20 2013", "subsets": [ { "dataset_id": "GDS4434", "description": "Tsc1-/- deficient", "sample_id": [ "GSM738380", "GSM738378", "GSM738375", "GSM738379", "GSM738377", "GSM738373" ], "type": "genotype/variation", "id": "GDS4434_1" }, { "dataset_id": "GDS4434", "description": "wild type", "sample_id": [ "GSM738372", "GSM738368", "GSM738365", "GSM738370", "GSM738367", "GSM738363" ], "type": "genotype/variation", "id": "GDS4434_2" }, { "dataset_id": "GDS4434", "description": "anti-CD3-CD28 stimulation", "sample_id": [ "GSM738365", "GSM738368", "GSM738372", "GSM738375", "GSM738378", "GSM738380" ], "type": "protocol", "id": "GDS4434_3" }, { "dataset_id": "GDS4434", "description": "no stimulation", "sample_id": [ "GSM738363", "GSM738367", "GSM738370", "GSM738373", "GSM738377", "GSM738379" ], "type": "protocol", "id": "GDS4434_4" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS4434", "version": 1.0, "instances": "12", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4434.tab", "compression": "gz" } ], [ [ "GDS4435.tab" ], { "title": "Serca2a effect on Dilated Cardiomyopathy iPSC-derived cardiomyocytes", "description": "Analysis of DCM iPSC-derived cardiomyocytes treated with sarcoplasmic reticulum Ca2+ adenosine triphosphatase (Serca2a). Serca2a treatment improved the function of these cardiomyocytes. Results provide insight into the molecular basis of Serca2a-mediated repair of DCM iPSC-derived cardiomyocytes.", "type": "Expression profiling by array", "pubmed_id": "22517884", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE35108", "order": "none", "update_date": "Mar 14 2013", "subsets": [ { "dataset_id": "GDS4435", "description": "normal iPSC-derived cardiomyocytes", "sample_id": [ "GSM862170", "GSM862171", "GSM862172", "GSM862173" ], "type": "cell type", "id": "GDS4435_1" }, { "dataset_id": "GDS4435", "description": "DCM iPSC-derived cardiomyocytes", "sample_id": [ "GSM862174", "GSM862175", "GSM862176", "GSM862177" ], "type": "cell type", "id": "GDS4435_2" }, { "dataset_id": "GDS4435", "description": "Serca2a overexpression", "sample_id": [ "GSM862172", "GSM862173", "GSM862176", "GSM862177" ], "type": "protocol", "id": "GDS4435_3" }, { "dataset_id": "GDS4435", "description": "control", "sample_id": [ "GSM862170", "GSM862171", "GSM862174", "GSM862175" ], "type": "protocol", "id": "GDS4435_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4435", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4435.tab", "compression": "gz" } ], [ [ "GDS4436.tab" ], { "title": "Sex effect on chronic coxsackievirus B3-induced myocarditis: heart", "description": "Analysis of heart from CVB3-infected males during chronic myocarditis/dilated cardiomyopathy (DCM) (day 90 postinfection). Myocarditis and DCM, often caused by viral infections, occur more frequently in men than in women. Results provided insight into molecular basis of DCM progression in males.", "type": "Expression profiling by array", "pubmed_id": "22328081", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE35182", "order": "none", "update_date": "Mar 15 2013", "subsets": [ { "dataset_id": "GDS4436", "description": "male", "sample_id": [ "GSM863128", "GSM863129", "GSM863130", "GSM863131", "GSM863132", "GSM863133" ], "type": "gender", "id": "GDS4436_1" }, { "dataset_id": "GDS4436", "description": "female", "sample_id": [ "GSM863122", "GSM863123", "GSM863124", "GSM863125", "GSM863126", "GSM863127" ], "type": "gender", "id": "GDS4436_2" }, { "dataset_id": "GDS4436", "description": "CVB3", "sample_id": [ "GSM863122", "GSM863123", "GSM863124", "GSM863128", "GSM863130", "GSM863131" ], "type": "infection", "id": "GDS4436_3" }, { "dataset_id": "GDS4436", "description": "control", "sample_id": [ "GSM863125", "GSM863126", "GSM863127", "GSM863129", "GSM863132", "GSM863133" ], "type": "infection", "id": "GDS4436_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4436", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4436.tab", "compression": "gz" } ], [ [ "GDS4437.tab" ], { "title": "Mammary gland cells of different genetic predispositions for somatic cell score response to S. aureus and E. coli: time course", "description": "Mammary gland epithelial cells of cows with favorable somatic cell score (SCS) QTL allele Q and unfavorable allele q after S. aureus or E.coli exposure for up to 24 hours. SCS is an indicator of milk quality and udder health. Results provide insight into molecular basis of mastitis susceptibility.", "type": "Expression profiling by array", "pubmed_id": "21702919", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "88", "value_type": "count", "reference_series": "GSE24560", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4437", "description": "SCS-BTA18-Q favorable", "sample_id": [ "GSM605490", "GSM605491", "GSM605492", "GSM605493", "GSM605494", "GSM605495", "GSM605496", "GSM605497", "GSM605498", "GSM605499", "GSM605500", "GSM605501", "GSM605502", "GSM605503", "GSM605504", "GSM605505", "GSM605506", "GSM605507", "GSM605508", "GSM605509", "GSM605510", "GSM605511", "GSM605512", "GSM605513", "GSM605514", "GSM605515", "GSM605516", "GSM605517", "GSM605518", "GSM605519", "GSM605520", "GSM605521", "GSM605522", "GSM605523", "GSM605548", "GSM605549", "GSM605550", "GSM605551", "GSM605552", "GSM605553", "GSM605554", "GSM605555", "GSM605556", "GSM605557", "GSM605558", "GSM605559", "GSM605560", "GSM605561", "GSM605562", "GSM605563", "GSM605564", "GSM605565" ], "type": "genotype/variation", "id": "GDS4437_1" }, { "dataset_id": "GDS4437", "description": "SCS-BTA18-q unfavorable", "sample_id": [ "GSM605524", "GSM605525", "GSM605526", "GSM605527", "GSM605528", "GSM605529", "GSM605530", "GSM605531", "GSM605532", "GSM605533", "GSM605534", "GSM605535", "GSM605536", "GSM605537", "GSM605538", "GSM605539", "GSM605540", "GSM605541", "GSM605542", "GSM605543", "GSM605544", "GSM605545", "GSM605546", "GSM605547", "GSM605566", "GSM605567", "GSM605568", "GSM605569", "GSM605570", "GSM605571", "GSM605572", "GSM605573", "GSM605574", "GSM605575", "GSM605576", "GSM605577" ], "type": "genotype/variation", "id": "GDS4437_2" }, { "dataset_id": "GDS4437", "description": "E. coli innoculated", "sample_id": [ "GSM605507", "GSM605508", "GSM605509", "GSM605510", "GSM605511", "GSM605512", "GSM605513", "GSM605514", "GSM605515", "GSM605516", "GSM605517", "GSM605518", "GSM605519", "GSM605520", "GSM605521", "GSM605522", "GSM605523", "GSM605534", "GSM605535", "GSM605536", "GSM605537", "GSM605538", "GSM605539", "GSM605540", "GSM605541", "GSM605542", "GSM605543", "GSM605544", "GSM605545", "GSM605546", "GSM605547" ], "type": "protocol", "id": "GDS4437_3" }, { "dataset_id": "GDS4437", "description": "S. aureus innoculated", "sample_id": [ "GSM605548", "GSM605549", "GSM605550", "GSM605551", "GSM605552", "GSM605553", "GSM605554", "GSM605555", "GSM605556", "GSM605557", "GSM605558", "GSM605559", "GSM605560", "GSM605561", "GSM605562", "GSM605563", "GSM605564", "GSM605565", "GSM605566", "GSM605567", "GSM605568", "GSM605569", "GSM605570", "GSM605571", "GSM605572", "GSM605573", "GSM605574", "GSM605575", "GSM605576", "GSM605577" ], "type": "protocol", "id": "GDS4437_4" }, { "dataset_id": "GDS4437", "description": "uninnoculated control", "sample_id": [ "GSM605490", "GSM605491", "GSM605492", "GSM605493", "GSM605494", "GSM605495", "GSM605496", "GSM605497", "GSM605498", "GSM605499", "GSM605500", "GSM605501", "GSM605502", "GSM605503", "GSM605504", "GSM605505", "GSM605506", "GSM605524", "GSM605525", "GSM605526", "GSM605527", "GSM605528", "GSM605529", "GSM605530", "GSM605531", "GSM605532", "GSM605533" ], "type": "protocol", "id": "GDS4437_5" }, { "dataset_id": "GDS4437", "description": "hour 1", "sample_id": [ "GSM605490", "GSM605491", "GSM605492", "GSM605493", "GSM605494", "GSM605495", "GSM605507", "GSM605508", "GSM605509", "GSM605510", "GSM605511", "GSM605512", "GSM605524", "GSM605525", "GSM605526", "GSM605534", "GSM605535", "GSM605536", "GSM605537", "GSM605538", "GSM605548", "GSM605549", "GSM605550", "GSM605551", "GSM605552", "GSM605553", "GSM605566", "GSM605567", "GSM605568", "GSM605569" ], "type": "time", "id": "GDS4437_6" }, { "dataset_id": "GDS4437", "description": "hour 6", "sample_id": [ "GSM605502", "GSM605503", "GSM605504", "GSM605505", "GSM605506", "GSM605518", "GSM605519", "GSM605520", "GSM605521", "GSM605522", "GSM605523", "GSM605531", "GSM605532", "GSM605533", "GSM605543", "GSM605544", "GSM605545", "GSM605546", "GSM605547", "GSM605561", "GSM605562", "GSM605563", "GSM605564", "GSM605565", "GSM605574", "GSM605575", "GSM605576", "GSM605577", "GSM605560" ], "type": "time", "id": "GDS4437_7" }, { "dataset_id": "GDS4437", "description": "hour 24", "sample_id": [ "GSM605496", "GSM605497", "GSM605498", "GSM605499", "GSM605500", "GSM605501", "GSM605513", "GSM605514", "GSM605515", "GSM605516", "GSM605517", "GSM605527", "GSM605528", "GSM605529", "GSM605530", "GSM605539", "GSM605540", "GSM605541", "GSM605542", "GSM605554", "GSM605555", "GSM605556", "GSM605557", "GSM605558", "GSM605559", "GSM605570", "GSM605571", "GSM605572", "GSM605573" ], "type": "time", "id": "GDS4437_8" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4437", "version": 1.0, "instances": "88", "variables": 19377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4437.tab", "compression": "gz" } ], [ [ "GDS4438.tab" ], { "title": "Phagocytic receptor Eater depleted hemocyte-derived cell line response to phagocytosed bacteria: time course", "description": "Analysis of phagocytic receptor Eater depleted hemocyte-derived S2 cells after phagocytosing bacteria for up to 180 minutes. Results provide insight into the role of Eater in the transcriptional regulation of genes that are induced after bacterial binding and phagocytosis.", "type": "Expression profiling by array", "pubmed_id": "22223092", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE31564", "order": "none", "update_date": "Jun 03 2013", "subsets": [ { "dataset_id": "GDS4438", "description": "RNAi-eater knock down", "sample_id": [ "GSM783337", "GSM783338", "GSM783339", "GSM783355", "GSM783356", "GSM783357", "GSM783343", "GSM783344", "GSM783345", "GSM783349", "GSM783350", "GSM783351" ], "type": "genotype/variation", "id": "GDS4438_1" }, { "dataset_id": "GDS4438", "description": "RNAi-control", "sample_id": [ "GSM783334", "GSM783335", "GSM783336", "GSM783352", "GSM783353", "GSM783354", "GSM783340", "GSM783341", "GSM783342", "GSM783346", "GSM783347", "GSM783348" ], "type": "genotype/variation", "id": "GDS4438_2" }, { "dataset_id": "GDS4438", "description": "Gram+/- bacteria exposure", "sample_id": [ "GSM783355", "GSM783356", "GSM783357", "GSM783343", "GSM783344", "GSM783345", "GSM783349", "GSM783350", "GSM783351", "GSM783352", "GSM783353", "GSM783354", "GSM783340", "GSM783341", "GSM783342", "GSM783346", "GSM783347", "GSM783348" ], "type": "agent", "id": "GDS4438_3" }, { "dataset_id": "GDS4438", "description": "no bacteria control", "sample_id": [ "GSM783337", "GSM783338", "GSM783339", "GSM783334", "GSM783335", "GSM783336" ], "type": "agent", "id": "GDS4438_4" }, { "dataset_id": "GDS4438", "description": "minute 30", "sample_id": [ "GSM783337", "GSM783338", "GSM783339", "GSM783343", "GSM783344", "GSM783345", "GSM783334", "GSM783335", "GSM783336", "GSM783340", "GSM783341", "GSM783342" ], "type": "time", "id": "GDS4438_5" }, { "dataset_id": "GDS4438", "description": "minute 90", "sample_id": [ "GSM783349", "GSM783350", "GSM783351", "GSM783346", "GSM783347", "GSM783348" ], "type": "time", "id": "GDS4438_6" }, { "dataset_id": "GDS4438", "description": "minute 180", "sample_id": [ "GSM783355", "GSM783356", "GSM783357", "GSM783352", "GSM783353", "GSM783354" ], "type": "time", "id": "GDS4438_7" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS4438", "version": 1.0, "instances": "24", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4438.tab", "compression": "gz" } ], [ [ "GDS4439.tab" ], { "title": "MOZ-TIF2 fusion oncogene-associated leukemic stem cells", "description": "Analysis of leukemic stem cells (LSCs), with granulocyte monocyte precursor (GMP) surface phenotype, from a MOZ-TIF2 model of leukemia (L-GMPs) and their normal GMP counterparts. Results provide insight into molecular mechanisms underlying the evolution and maintenance of LSCs in leukemogenesis.", "type": "Expression profiling by array", "pubmed_id": "21505102", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE24797", "order": "none", "update_date": "Jan 06 2014", "subsets": [ { "dataset_id": "GDS4439", "description": "L-GMP", "sample_id": [ "GSM610636", "GSM610637", "GSM610638" ], "type": "cell type", "id": "GDS4439_1" }, { "dataset_id": "GDS4439", "description": "normal GMP", "sample_id": [ "GSM610618", "GSM610619", "GSM610620", "GSM610621" ], "type": "cell type", "id": "GDS4439_2" }, { "dataset_id": "GDS4439", "description": "MOZ-TIF2", "sample_id": [ "GSM610636", "GSM610637", "GSM610638" ], "type": "genotype/variation", "id": "GDS4439_3" }, { "dataset_id": "GDS4439", "description": "control", "sample_id": [ "GSM610618", "GSM610619", "GSM610620", "GSM610621" ], "type": "genotype/variation", "id": "GDS4439_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4439", "version": 1.0, "instances": "7", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4439.tab", "compression": "gz" } ], [ [ "GDS444.tab" ], { "title": "Larval tissue-specific transcripts", "description": "Identification of transcripts enriched in 5 differentiated larval tissue types. Epidermis with attached muscle, salivary gland, wing disc, midgut, and central nervous system tissues examined at 18 hours before puparium formation (BPF) in Canton S strain.", "type": "Expression profiling by array", "pubmed_id": "12852852", "platform": "GPL248", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20000", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log ratio", "reference_series": "GSE541", "order": "none", "update_date": "Nov 17 2003", "subsets": [ { "dataset_id": "GDS444", "description": "epidermis with attached muscle", "sample_id": [ "GSM4490", "GSM4491", "GSM4492" ], "type": "tissue", "id": "GDS444_1" }, { "dataset_id": "GDS444", "description": "salivary gland", "sample_id": [ "GSM4508", "GSM4515", "GSM4520" ], "type": "tissue", "id": "GDS444_2" }, { "dataset_id": "GDS444", "description": "wing disc", "sample_id": [ "GSM4524", "GSM4530", "GSM4534" ], "type": "tissue", "id": "GDS444_3" }, { "dataset_id": "GDS444", "description": "midgut", "sample_id": [ "GSM4541", "GSM4547", "GSM4552" ], "type": "tissue", "id": "GDS444_4" }, { "dataset_id": "GDS444", "description": "central nervous system", "sample_id": [ "GSM4559", "GSM4564", "GSM4568" ], "type": "tissue", "id": "GDS444_5" } ], "taxid": "7227", "genes": 12709, "aggregation_function": "mean", "name": "GDS444", "version": 1.0, "instances": "15", "variables": 12711, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS444.tab", "compression": "gz" } ], [ [ "GDS4440.tab" ], { "title": "Transcription factor Otx2 knockout effect on fourth ventricular choroid plexus", "description": "Analysis of fourth ventricular choroid plexus tissue from Otx2 knockout mice at E13. Choroid plexuses (ChPs) are main regulators of cerebrospinal fluid composition in developing brain. Results provide insight into role of transcription factor Otx2 in development and maintenance of ChP cells.", "type": "Expression profiling by array", "pubmed_id": "23364326", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE27630", "order": "none", "update_date": "Mar 18 2013", "subsets": [ { "dataset_id": "GDS4440", "description": "Otx2 knockout", "sample_id": [ "GSM684727", "GSM684728", "GSM684729", "GSM684730" ], "type": "genotype/variation", "id": "GDS4440_1" }, { "dataset_id": "GDS4440", "description": "control", "sample_id": [ "GSM684731", "GSM684732", "GSM684733", "GSM684734" ], "type": "genotype/variation", "id": "GDS4440_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4440", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4440.tab", "compression": "gz" } ], [ [ "GDS4441.tab" ], { "title": "Runt homology domain expression effect on hematopoietic stem cells", "description": "Analysis of c-Kit+Sca-1+Lin- hematopoietic stem cells (HSCs) lacking Runx1 or expressing the runt homology domain, RUNX1 (41-214). RUNX1(41-214) expression induces myelodysplastic syndrome (MDS) in mice. Results provide insight into molecular basis of MDS progression induced by RUNX1 (41-214).", "type": "Expression profiling by array", "pubmed_id": "22919028", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE40155", "order": "none", "update_date": "Jun 03 2013", "subsets": [ { "dataset_id": "GDS4441", "description": "RUNX1(41-214)-expressing", "sample_id": [ "GSM986474", "GSM986475", "GSM986476" ], "type": "genotype/variation", "id": "GDS4441_1" }, { "dataset_id": "GDS4441", "description": "Runx1-knockout (Runx1floxed/floxedMxCre+/-)", "sample_id": [ "GSM986471", "GSM986472", "GSM986473" ], "type": "genotype/variation", "id": "GDS4441_2" }, { "dataset_id": "GDS4441", "description": "control (Runx1floxed/floxedMxCre-/-)", "sample_id": [ "GSM986468", "GSM986469", "GSM986470" ], "type": "genotype/variation", "id": "GDS4441_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4441", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4441.tab", "compression": "gz" } ], [ [ "GDS4442.tab" ], { "title": "bHLH transcription factor Mesogenin1 ectopic expression effect on embryoid bodies: time course", "description": "Analysis of embryoid bodies following induction of ectopic Msgn1 expression for up to 48 hours. Msgn1, a bHLH transcription factor, is a target of Wnt3a, a signaling protein that functions in the segmentation clock and the determination front during somitogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21750544", "25371364" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE29848", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4442", "description": "doxycycline induction", "sample_id": [ "GSM739475", "GSM739476", "GSM739477", "GSM739481", "GSM739482", "GSM739483", "GSM739487", "GSM739488", "GSM739489" ], "type": "protocol", "id": "GDS4442_1" }, { "dataset_id": "GDS4442", "description": "no induction", "sample_id": [ "GSM739472", "GSM739473", "GSM739474", "GSM739478", "GSM739479", "GSM739480", "GSM739484", "GSM739485", "GSM739486" ], "type": "protocol", "id": "GDS4442_2" }, { "dataset_id": "GDS4442", "description": "hour 12", "sample_id": [ "GSM739472", "GSM739473", "GSM739474", "GSM739475", "GSM739476", "GSM739477" ], "type": "time", "id": "GDS4442_3" }, { "dataset_id": "GDS4442", "description": "hour 24", "sample_id": [ "GSM739478", "GSM739479", "GSM739480", "GSM739481", "GSM739482", "GSM739483" ], "type": "time", "id": "GDS4442_4" }, { "dataset_id": "GDS4442", "description": "hour 48", "sample_id": [ "GSM739484", "GSM739485", "GSM739486", "GSM739487", "GSM739488", "GSM739489" ], "type": "time", "id": "GDS4442_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4442", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4442.tab", "compression": "gz" } ], [ [ "GDS4443.tab" ], { "title": "Homeobox transcription factor Dlx5 deficiency effect on embryonic otic vesicle", "description": "Analysis of otic vesicles from E10 and E10.5 embryos deficient for Dlx5. Dlx5 is a homeobox transcription factor that plays a key role in the development of many organ systems. Results provide insight into the role of Dlx5 in the regulation of early inner ear development.", "type": "Expression profiling by array", "pubmed_id": "21227998", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE22381", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4443", "description": "Dlx5-null", "sample_id": [ "GSM556780", "GSM556781", "GSM556784", "GSM556785" ], "type": "genotype/variation", "id": "GDS4443_1" }, { "dataset_id": "GDS4443", "description": "wild type", "sample_id": [ "GSM556779", "GSM556782", "GSM556783", "GSM556778" ], "type": "genotype/variation", "id": "GDS4443_2" }, { "dataset_id": "GDS4443", "description": "embryonic stage E10", "sample_id": [ "GSM556780", "GSM556781", "GSM556778", "GSM556779" ], "type": "age", "id": "GDS4443_3" }, { "dataset_id": "GDS4443", "description": "embryonic stage E10.5", "sample_id": [ "GSM556784", "GSM556785", "GSM556782", "GSM556783" ], "type": "age", "id": "GDS4443_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4443", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4443.tab", "compression": "gz" } ], [ [ "GDS4444.tab" ], { "title": "Atopic Dermatitis response to narrow-band UVB treatment", "description": "Analysis of lesional and non-lesional skin biopsies from Atopic Dermatitis patients following NB-UVB phototherapy. Results identify a set of biomarkers of disease response to NB-UVB phototherapy.", "type": "Expression profiling by array", "pubmed_id": "21762976", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE27887", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4444", "description": "pre NB-UVB", "sample_id": [ "GSM688772", "GSM688771", "GSM688770", "GSM688769", "GSM688768", "GSM688767", "GSM688766", "GSM688765", "GSM688764", "GSM688763", "GSM688762", "GSM688761", "GSM688760", "GSM688759", "GSM688758", "GSM688757", "GSM688756" ], "type": "protocol", "id": "GDS4444_1" }, { "dataset_id": "GDS4444", "description": "post NB-UVB", "sample_id": [ "GSM688755", "GSM688754", "GSM688753", "GSM688752", "GSM688751", "GSM688750", "GSM688749", "GSM688748", "GSM688747", "GSM688746", "GSM688745", "GSM688744", "GSM688743", "GSM688742", "GSM688741", "GSM688740", "GSM688739", "GSM688738" ], "type": "protocol", "id": "GDS4444_2" }, { "dataset_id": "GDS4444", "description": "lesional skin", "sample_id": [ "GSM688741", "GSM688761", "GSM688743", "GSM688763", "GSM688745", "GSM688765", "GSM688755", "GSM688772", "GSM688747", "GSM688767", "GSM688751", "GSM688749", "GSM688768", "GSM688739", "GSM688757", "GSM688753", "GSM688770", "GSM688759" ], "type": "tissue", "id": "GDS4444_3" }, { "dataset_id": "GDS4444", "description": "non-lesional skin", "sample_id": [ "GSM688740", "GSM688760", "GSM688742", "GSM688762", "GSM688744", "GSM688764", "GSM688754", "GSM688771", "GSM688746", "GSM688766", "GSM688750", "GSM688769", "GSM688748", "GSM688738", "GSM688756", "GSM688752", "GSM688758" ], "type": "tissue", "id": "GDS4444_4" }, { "dataset_id": "GDS4444", "description": "SCORAD: 0", "sample_id": [ "GSM688741", "GSM688740", "GSM688760", "GSM688743", "GSM688742", "GSM688762", "GSM688745", "GSM688744", "GSM688764", "GSM688755", "GSM688754", "GSM688772", "GSM688747", "GSM688746", "GSM688766", "GSM688751", "GSM688750", "GSM688749", "GSM688748", "GSM688768", "GSM688739", "GSM688738", "GSM688756", "GSM688753", "GSM688752", "GSM688770", "GSM688758" ], "type": "other", "id": "GDS4444_5" }, { "dataset_id": "GDS4444", "description": "SCORAD: 37", "sample_id": [ "GSM688761" ], "type": "other", "id": "GDS4444_6" }, { "dataset_id": "GDS4444", "description": "SCORAD: 70", "sample_id": [ "GSM688763" ], "type": "other", "id": "GDS4444_7" }, { "dataset_id": "GDS4444", "description": "SCORAD: 51", "sample_id": [ "GSM688765" ], "type": "other", "id": "GDS4444_8" }, { "dataset_id": "GDS4444", "description": "SCORAD: 36", "sample_id": [ "GSM688771" ], "type": "other", "id": "GDS4444_9" }, { "dataset_id": "GDS4444", "description": "SCORAD: 33", "sample_id": [ "GSM688767" ], "type": "other", "id": "GDS4444_10" }, { "dataset_id": "GDS4444", "description": "SCORAD: 57", "sample_id": [ "GSM688769" ], "type": "other", "id": "GDS4444_11" }, { "dataset_id": "GDS4444", "description": "SCORAD: 55", "sample_id": [ "GSM688757" ], "type": "other", "id": "GDS4444_12" }, { "dataset_id": "GDS4444", "description": "SCORAD: 76", "sample_id": [ "GSM688759" ], "type": "other", "id": "GDS4444_13" }, { "dataset_id": "GDS4444", "description": "Patient: P1", "sample_id": [ "GSM688741", "GSM688740", "GSM688761", "GSM688760" ], "type": "individual", "id": "GDS4444_14" }, { "dataset_id": "GDS4444", "description": "Patient: P2", "sample_id": [ "GSM688745", "GSM688744", "GSM688765", "GSM688764" ], "type": "individual", "id": "GDS4444_15" }, { "dataset_id": "GDS4444", "description": "Patient: P3", "sample_id": [ "GSM688755", "GSM688754", "GSM688772", "GSM688771" ], "type": "individual", "id": "GDS4444_16" }, { "dataset_id": "GDS4444", "description": "Patient: P4", "sample_id": [ "GSM688747", "GSM688746", "GSM688767", "GSM688766" ], "type": "individual", "id": "GDS4444_17" }, { "dataset_id": "GDS4444", "description": "Patient: P5", "sample_id": [ "GSM688751", "GSM688750", "GSM688769" ], "type": "individual", "id": "GDS4444_18" }, { "dataset_id": "GDS4444", "description": "Patient: P6", "sample_id": [ "GSM688749", "GSM688748", "GSM688768" ], "type": "individual", "id": "GDS4444_19" }, { "dataset_id": "GDS4444", "description": "Patient: P7", "sample_id": [ "GSM688739", "GSM688738", "GSM688757", "GSM688756" ], "type": "individual", "id": "GDS4444_20" }, { "dataset_id": "GDS4444", "description": "Patient: P8", "sample_id": [ "GSM688753", "GSM688752", "GSM688770" ], "type": "individual", "id": "GDS4444_21" }, { "dataset_id": "GDS4444", "description": "Patient: P9", "sample_id": [ "GSM688759", "GSM688758" ], "type": "individual", "id": "GDS4444_22" }, { "dataset_id": "GDS4444", "description": "Patient: P10", "sample_id": [ "GSM688743", "GSM688742", "GSM688763", "GSM688762" ], "type": "individual", "id": "GDS4444_23" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4444", "version": 1.0, "instances": "35", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4444.tab", "compression": "gz" } ], [ [ "GDS4445.tab" ], { "title": "Polycomb group protein CBX2 deficiency effect on XY and XX embryonic gonads", "description": "Analysis of E11.5 XY and XX embryonic gonads deficient for the Polycomb group protein CBX2. Animals lacking CBX2 exhibit defects in gonadal, adrenal and splenic development. Results provide insight into role of Cbx2 in gonadal sex differentiation.", "type": "Expression profiling by array", "pubmed_id": "22186409", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE29485", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4445", "description": "Cbx2 knockout", "sample_id": [ "GSM729412", "GSM729413", "GSM729414", "GSM729415", "GSM729416", "GSM729417" ], "type": "genotype/variation", "id": "GDS4445_1" }, { "dataset_id": "GDS4445", "description": "wild type", "sample_id": [ "GSM729418", "GSM729419", "GSM729420", "GSM729421", "GSM729422", "GSM729423" ], "type": "genotype/variation", "id": "GDS4445_2" }, { "dataset_id": "GDS4445", "description": "XX", "sample_id": [ "GSM729413", "GSM729414", "GSM729418", "GSM729419", "GSM729420", "GSM729412" ], "type": "gender", "id": "GDS4445_3" }, { "dataset_id": "GDS4445", "description": "XY", "sample_id": [ "GSM729415", "GSM729416", "GSM729417", "GSM729421", "GSM729422", "GSM729423" ], "type": "gender", "id": "GDS4445_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4445", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4445.tab", "compression": "gz" } ], [ [ "GDS4446.tab" ], { "title": "Zinc finger transcription factor Fezf1 deficiency effect on main olfactory epithelial cells", "description": "Analysis of E.18 olfactory cells lacking Fezf1, a zinc finger transcription factor. Olfactory cells isolated from the main olfactory epithelium. Results provide insight into the role of Fezf1 in olfactory system development and sensory neuron identity.", "type": "Expression profiling by array", "pubmed_id": "21452247", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE26064", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4446", "description": "Fezf1+/-", "sample_id": [ "GSM639938", "GSM639939", "GSM639940" ], "type": "genotype/variation", "id": "GDS4446_1" }, { "dataset_id": "GDS4446", "description": "Fezf1 -/-", "sample_id": [ "GSM639941", "GSM639942", "GSM639943" ], "type": "genotype/variation", "id": "GDS4446_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4446", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4446.tab", "compression": "gz" } ], [ [ "GDS4447.tab" ], { "title": "Neurofibromin inactivation effect on triceps muscle", "description": "Analysis of triceps muscles of 3 month old animals inactivated for the neurofibromin Nf1 gene in the early limb bud mesenchyme. This inactivation results in muscular dystrophy. Results provide insight into the role of Nf1 in skeletal muscle development.", "type": "Expression profiling by array", "pubmed_id": "21478499", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29343", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4447", "description": "Nf1Prx1 mutant", "sample_id": [ "GSM725368", "GSM725369", "GSM725370", "GSM725371" ], "type": "genotype/variation", "id": "GDS4447_1" }, { "dataset_id": "GDS4447", "description": "wild type control", "sample_id": [ "GSM725364", "GSM725365", "GSM725366", "GSM725367" ], "type": "genotype/variation", "id": "GDS4447_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4447", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4447.tab", "compression": "gz" } ], [ [ "GDS4448.tab" ], { "title": "Large RS-like factor SON knockdown effect in HeLa cervical cancer cell line", "description": "Analysis of HeLa cells depleted of SON, a large Ser/Arg (SR)-related protein localized in nuclear speckles. SON depletion severely impairs spindle pole separation, microtubule dynamics, and genome integrity. Results provide insight into the role of SON in cell-cycle progression.", "type": "Expression profiling by array", "pubmed_id": "21504830", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE26888", "order": "none", "update_date": "May 16 2013", "subsets": [ { "dataset_id": "GDS4448", "description": "SON knockdown", "sample_id": [ "GSM662185", "GSM662187", "GSM662189" ], "type": "genotype/variation", "id": "GDS4448_1" }, { "dataset_id": "GDS4448", "description": "control", "sample_id": [ "GSM662184", "GSM662186", "GSM662188" ], "type": "genotype/variation", "id": "GDS4448_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4448", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4448.tab", "compression": "gz" } ], [ [ "GDS4449.tab" ], { "title": "Model of \u03b2-catenin overexpression in embryonic kidney", "description": "Analysis of \u03b2-catGOF-UB (\u03b2-catenin Gain of Function-Ureteric Bud) mutant kidneys from E12.5 embryos. The \u03b2-catGOF-UB mutants display severe renal malformations. Results provide insight into the role of \u03b2-catenin in renal dysplasia.", "type": "Expression profiling by array", "pubmed_id": "21436291", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE20325", "order": "none", "update_date": "May 16 2013", "subsets": [ { "dataset_id": "GDS4449", "description": "wild type", "sample_id": [ "GSM243346", "GSM243347", "GSM243348" ], "type": "genotype/variation", "id": "GDS4449_1" }, { "dataset_id": "GDS4449", "description": "\u03b2-Catenin overexpression", "sample_id": [ "GSM509260", "GSM509261", "GSM509262" ], "type": "genotype/variation", "id": "GDS4449_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4449", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4449.tab", "compression": "gz" } ], [ [ "GDS4450.tab" ], { "title": "Inositol 1,4,5-trisphosphate receptor type 1 and type 3 double knockouts: embryonic heart", "description": "Analysis of heart from E9.25 embryos double-mutant for intracellular Ca2+ release channels IP3R type 1 and type 3 (IP3R1-/-IP3R3-/-). The double-mutants show hypoplasia of the outflow region in fetal heart. Results provide insight into a redundant role for IP3R1 and IP3R2 during cardiogenesis.", "type": "Expression profiling by array", "pubmed_id": "21382375", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE28186", "order": "none", "update_date": "May 17 2013", "subsets": [ { "dataset_id": "GDS4450", "description": "wild type", "sample_id": [ "GSM697735", "GSM697737" ], "type": "genotype/variation", "id": "GDS4450_1" }, { "dataset_id": "GDS4450", "description": "double knockout IP3R1-/- IP3R3-/-", "sample_id": [ "GSM697738", "GSM697740" ], "type": "genotype/variation", "id": "GDS4450_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4450", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4450.tab", "compression": "gz" } ], [ [ "GDS4451.tab" ], { "title": "Childhood cerebral adrenoleukodystrophy patient-specific iPSC model", "description": "Analysis of induced pluripotent stem cells (iPSC) derived from childhood cerebral adrenoleukodystrophy (CCALD) patient dermal fibroblasts. Inflammatory brain demyelination is observed in CCALD patients. Results provide insight into molecular mechanisms underlying CCALD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "23036268", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE34309", "order": "none", "update_date": "May 17 2013", "subsets": [ { "dataset_id": "GDS4451", "description": "dermal fibroblast", "sample_id": [ "GSM847091", "GSM847092", "GSM847088", "GSM847089", "GSM847090" ], "type": "cell type", "id": "GDS4451_1" }, { "dataset_id": "GDS4451", "description": "iPSC", "sample_id": [ "GSM847101", "GSM847102", "GSM847103", "GSM847104", "GSM847105", "GSM847093", "GSM847094", "GSM847095", "GSM847096", "GSM847097", "GSM847098", "GSM847099", "GSM847100" ], "type": "cell type", "id": "GDS4451_2" }, { "dataset_id": "GDS4451", "description": "control", "sample_id": [ "GSM847100", "GSM847099", "GSM847098", "GSM847097", "GSM847096", "GSM847095", "GSM847094", "GSM847093", "GSM847090", "GSM847089", "GSM847088" ], "type": "disease state", "id": "GDS4451_3" }, { "dataset_id": "GDS4451", "description": "CCALD", "sample_id": [ "GSM847092", "GSM847091", "GSM847105", "GSM847104", "GSM847103", "GSM847102", "GSM847101" ], "type": "disease state", "id": "GDS4451_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4451", "version": 1.0, "instances": "18", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4451.tab", "compression": "gz" } ], [ [ "GDS4452.tab" ], { "title": "Wild type embryonic lens development", "description": "Analysis of lens from ICR embryos at 3 key developmental stages in the transition from E10.5 lens placode invagination to E12.5 lens primary fiber cell differentiation and matched whole embryo body (WB, minus ocular tissue) controls. Results provide insight into molecular basis of lens development.", "type": "Expression profiling by array", "pubmed_id": "22323457", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE32334", "order": "ordered", "update_date": "May 17 2013", "subsets": [ { "dataset_id": "GDS4452", "description": "lens", "sample_id": [ "GSM800869", "GSM800870", "GSM800871", "GSM800872", "GSM800873", "GSM800874", "GSM800875", "GSM800876", "GSM800877" ], "type": "tissue", "id": "GDS4452_1" }, { "dataset_id": "GDS4452", "description": "whole body minus eye region", "sample_id": [ "GSM800878", "GSM800879", "GSM800880", "GSM800881" ], "type": "tissue", "id": "GDS4452_2" }, { "dataset_id": "GDS4452", "description": "E10.5", "sample_id": [ "GSM800869", "GSM800870", "GSM800871" ], "type": "development stage", "id": "GDS4452_3" }, { "dataset_id": "GDS4452", "description": "E11.5", "sample_id": [ "GSM800872", "GSM800873", "GSM800874" ], "type": "development stage", "id": "GDS4452_4" }, { "dataset_id": "GDS4452", "description": "E12.5", "sample_id": [ "GSM800875", "GSM800876", "GSM800877" ], "type": "development stage", "id": "GDS4452_5" }, { "dataset_id": "GDS4452", "description": "E10.5 - E12.5", "sample_id": [ "GSM800878", "GSM800879", "GSM800880", "GSM800881" ], "type": "development stage", "id": "GDS4452_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4452", "version": 1.0, "instances": "13", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4452.tab", "compression": "gz" } ], [ [ "GDS4453.tab" ], { "title": "Wild type embryonic tooth germ tissue", "description": "Analysis of laser capture microdissected tooth germ tissue from ICR E13.5 embryos and matched whole embryo body (WB, without tooth germ) controls representing stages E11.5, E12.5, and E13.5. Results provide insight into molecular mechanisms underlying tooth development.", "type": "Expression profiling by array", "pubmed_id": "22323457", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE32334", "order": "none", "update_date": "May 17 2013", "subsets": [ { "dataset_id": "GDS4453", "description": "tooth germ", "sample_id": [ "GSM800882", "GSM800883", "GSM800884" ], "type": "tissue", "id": "GDS4453_1" }, { "dataset_id": "GDS4453", "description": "whole body minus tooth germ", "sample_id": [ "GSM800885", "GSM800886", "GSM800887" ], "type": "tissue", "id": "GDS4453_2" }, { "dataset_id": "GDS4453", "description": "E13.5", "sample_id": [ "GSM800882", "GSM800883", "GSM800884" ], "type": "development stage", "id": "GDS4453_3" }, { "dataset_id": "GDS4453", "description": "E11.5-13.5", "sample_id": [ "GSM800885", "GSM800886", "GSM800887" ], "type": "development stage", "id": "GDS4453_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4453", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4453.tab", "compression": "gz" } ], [ [ "GDS4454.tab" ], { "title": "Fibroblast growth factor receptor 3 depletion effect on bladder cancer cell line RT112", "description": "Analysis of bladder cancer cell line RT112 subjected to doxycycline-inducible, shRNA knockdown of FGFR3. Knockdown of FGFR3 in RT112 cells significantly attenuates tumor growth in vitro and in vivo. Results provide insight into the molecular mechanisms underlying FGFR3-driven bladder cancer.", "type": "Expression profiling by array", "pubmed_id": "23019225", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE41035", "order": "none", "update_date": "May 17 2013", "subsets": [ { "dataset_id": "GDS4454", "description": "control", "sample_id": [ "GSM1007043", "GSM1007044", "GSM1007045", "GSM1007032", "GSM1007046", "GSM1007033" ], "type": "genotype/variation", "id": "GDS4454_1" }, { "dataset_id": "GDS4454", "description": "FGFR3 knockdown (shRNA 2-4)", "sample_id": [ "GSM1007047", "GSM1007034", "GSM1007048", "GSM1007035", "GSM1007049", "GSM1007036" ], "type": "genotype/variation", "id": "GDS4454_2" }, { "dataset_id": "GDS4454", "description": "FGFR3 knockdown (shRNA 4-1)", "sample_id": [ "GSM1007050", "GSM1007037", "GSM1007051", "GSM1007038", "GSM1007052", "GSM1007039" ], "type": "genotype/variation", "id": "GDS4454_3" }, { "dataset_id": "GDS4454", "description": "FGFR3 knockdown (shRNA 6-16)", "sample_id": [ "GSM1007053", "GSM1007040", "GSM1007054", "GSM1007041", "GSM1007055", "GSM1007042" ], "type": "genotype/variation", "id": "GDS4454_4" }, { "dataset_id": "GDS4454", "description": "doxycycline induction", "sample_id": [ "GSM1007042", "GSM1007055", "GSM1007041", "GSM1007039", "GSM1007052", "GSM1007038", "GSM1007036", "GSM1007049", "GSM1007035", "GSM1007033", "GSM1007046", "GSM1007032" ], "type": "protocol", "id": "GDS4454_5" }, { "dataset_id": "GDS4454", "description": "no induction", "sample_id": [ "GSM1007054", "GSM1007040", "GSM1007053", "GSM1007051", "GSM1007037", "GSM1007050", "GSM1007048", "GSM1007034", "GSM1007047", "GSM1007045", "GSM1007044", "GSM1007043" ], "type": "protocol", "id": "GDS4454_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4454", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4454.tab", "compression": "gz" } ], [ [ "GDS4455.tab" ], { "title": "RhoGTP dissociation inhibitor 2 effect on UM-UC-3 bladder cancer cells", "description": "Analysis of UM-UC-3 bladder carcinoma cells (low RhoGDI2-expressing and highly metastatic) stably transfected with GFP-RhoGDI2. RhoGDI2 is a metastasis suppressor protein. Results provide insight into the molecular basis of RhoGD12-mediated blockage of prometastatic inflammatory host response.", "type": "Expression profiling by array", "pubmed_id": "22406535", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE35014", "order": "none", "update_date": "May 31 2013", "subsets": [ { "dataset_id": "GDS4455", "description": "control", "sample_id": [ "GSM860661", "GSM860662" ], "type": "genotype/variation", "id": "GDS4455_1" }, { "dataset_id": "GDS4455", "description": "RhoGDI2", "sample_id": [ "GSM860663", "GSM860664" ], "type": "genotype/variation", "id": "GDS4455_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4455", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4455.tab", "compression": "gz" } ], [ [ "GDS4456.tab" ], { "title": "High-risk bladder cancer", "description": "Analysis of bladder cancer specimens from a high-risk population of patients who underwent radical cystectomy (Memorial Sloan-Kettering Cancer Center cohort). Results provide insight into the prediction of survival in high-risk urothelial carcinoma of the urinary bladder.", "type": "Expression profiling by array", "pubmed_id": [ "22228636", "24486590" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "93", "value_type": "transformed count", "reference_series": "GSE31684", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4456", "description": "stage pTa", "sample_id": [ "GSM786523", "GSM786527", "GSM786539", "GSM786541", "GSM786556" ], "type": "specimen", "id": "GDS4456_1" }, { "dataset_id": "GDS4456", "description": "stage pT1", "sample_id": [ "GSM786497", "GSM786501", "GSM786517", "GSM786534", "GSM786555", "GSM786558", "GSM786559", "GSM786565", "GSM786572", "GSM786579" ], "type": "specimen", "id": "GDS4456_2" }, { "dataset_id": "GDS4456", "description": "stage pT2", "sample_id": [ "GSM786491", "GSM786492", "GSM786493", "GSM786499", "GSM786502", "GSM786509", "GSM786537", "GSM786538", "GSM786548", "GSM786562", "GSM786566", "GSM786567", "GSM786573", "GSM786574", "GSM786580", "GSM786581", "GSM786583" ], "type": "specimen", "id": "GDS4456_3" }, { "dataset_id": "GDS4456", "description": "stage pT3", "sample_id": [ "GSM786496", "GSM786498", "GSM786500", "GSM786503", "GSM786506", "GSM786507", "GSM786508", "GSM786512", "GSM786515", "GSM786518", "GSM786519", "GSM786522", "GSM786524", "GSM786526", "GSM786528", "GSM786529", "GSM786530", "GSM786531", "GSM786532", "GSM786533", "GSM786535", "GSM786543", "GSM786544", "GSM786545", "GSM786547", "GSM786549", "GSM786550", "GSM786551", "GSM786552", "GSM786554", "GSM786557", "GSM786560", "GSM786563", "GSM786564", "GSM786568", "GSM786569", "GSM786570", "GSM786571", "GSM786576", "GSM786577", "GSM786578", "GSM786582" ], "type": "specimen", "id": "GDS4456_4" }, { "dataset_id": "GDS4456", "description": "stage pT4", "sample_id": [ "GSM786494", "GSM786495", "GSM786504", "GSM786505", "GSM786510", "GSM786511", "GSM786513", "GSM786514", "GSM786516", "GSM786520", "GSM786521", "GSM786525", "GSM786536", "GSM786540", "GSM786542", "GSM786546", "GSM786553", "GSM786561", "GSM786575" ], "type": "specimen", "id": "GDS4456_5" }, { "dataset_id": "GDS4456", "description": "no recurrence/DOD", "sample_id": [ "GSM786491", "GSM786495", "GSM786497", "GSM786498", "GSM786500", "GSM786501", "GSM786503", "GSM786505", "GSM786507", "GSM786509", "GSM786511", "GSM786513", "GSM786515", "GSM786517", "GSM786522", "GSM786525", "GSM786526", "GSM786527", "GSM786528", "GSM786531", "GSM786534", "GSM786535", "GSM786538", "GSM786539", "GSM786540", "GSM786541", "GSM786543", "GSM786545", "GSM786548", "GSM786551", "GSM786552", "GSM786553", "GSM786554", "GSM786555", "GSM786556", "GSM786557", "GSM786558", "GSM786559", "GSM786560", "GSM786561", "GSM786562", "GSM786564", "GSM786565", "GSM786566", "GSM786568", "GSM786569", "GSM786571", "GSM786572", "GSM786573", "GSM786574", "GSM786575", "GSM786580", "GSM786581", "GSM786583" ], "type": "disease state", "id": "GDS4456_6" }, { "dataset_id": "GDS4456", "description": "recurrence/DOD", "sample_id": [ "GSM786492", "GSM786493", "GSM786494", "GSM786496", "GSM786499", "GSM786502", "GSM786504", "GSM786506", "GSM786508", "GSM786510", "GSM786512", "GSM786514", "GSM786516", "GSM786518", "GSM786519", "GSM786520", "GSM786521", "GSM786523", "GSM786524", "GSM786529", "GSM786530", "GSM786532", "GSM786533", "GSM786536", "GSM786537", "GSM786542", "GSM786544", "GSM786546", "GSM786547", "GSM786549", "GSM786550", "GSM786563", "GSM786567", "GSM786570", "GSM786576", "GSM786577", "GSM786578", "GSM786579", "GSM786582" ], "type": "disease state", "id": "GDS4456_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4456", "version": 1.0, "instances": "93", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4456.tab", "compression": "gz" } ], [ [ "GDS4458.tab" ], { "title": "Anti-IL-17 monclonal antibody ixekizumab effect on chronic psoriasis", "description": "Analysis of psoriatic skin biopsies from patients treated with 150mg of subcutaneous anti-IL-17 mAb ixekizumab (previously LY2439821) at weeks 0 and 2. IL-17 blockade resulted in a high-grade clinical improvement in psoriasis. Results provide insight into the role of IL-17 in disease pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22677045", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE31652", "order": "none", "update_date": "Jun 01 2013", "subsets": [ { "dataset_id": "GDS4458", "description": "anti-IL-17 mAb", "sample_id": [ "GSM785971", "GSM785972", "GSM785973", "GSM785974", "GSM785975", "GSM785976", "GSM785977", "GSM785978", "GSM785979", "GSM785980", "GSM785981", "GSM785982", "GSM785983", "GSM785984" ], "type": "agent", "id": "GDS4458_1" }, { "dataset_id": "GDS4458", "description": "placebo", "sample_id": [ "GSM785985", "GSM785986", "GSM785987", "GSM785988", "GSM785989", "GSM785990", "GSM785991", "GSM785992", "GSM785993", "GSM785994", "GSM785995", "GSM785996", "GSM785997", "GSM785998", "GSM785999", "GSM786000" ], "type": "agent", "id": "GDS4458_2" }, { "dataset_id": "GDS4458", "description": "week 0", "sample_id": [ "GSM785971", "GSM785973", "GSM785975", "GSM785977", "GSM785979", "GSM785980", "GSM785982", "GSM785984", "GSM785985", "GSM785987", "GSM785988", "GSM785990", "GSM785992", "GSM785994", "GSM785996", "GSM785998" ], "type": "time", "id": "GDS4458_3" }, { "dataset_id": "GDS4458", "description": "week 2", "sample_id": [ "GSM785972", "GSM785974", "GSM785976", "GSM785978", "GSM785981", "GSM785983", "GSM785986", "GSM785989", "GSM785991", "GSM785993", "GSM785995", "GSM785997", "GSM785999", "GSM786000" ], "type": "time", "id": "GDS4458_4" }, { "dataset_id": "GDS4458", "description": "1108", "sample_id": [ "GSM785985", "GSM785986" ], "type": "individual", "id": "GDS4458_5" }, { "dataset_id": "GDS4458", "description": "1207", "sample_id": [ "GSM785971", "GSM785972" ], "type": "individual", "id": "GDS4458_6" }, { "dataset_id": "GDS4458", "description": "1208", "sample_id": [ "GSM785973", "GSM785974" ], "type": "individual", "id": "GDS4458_7" }, { "dataset_id": "GDS4458", "description": "1209", "sample_id": [ "GSM785975", "GSM785976" ], "type": "individual", "id": "GDS4458_8" }, { "dataset_id": "GDS4458", "description": "1304", "sample_id": [ "GSM785987" ], "type": "individual", "id": "GDS4458_9" }, { "dataset_id": "GDS4458", "description": "1405", "sample_id": [ "GSM785988", "GSM785989" ], "type": "individual", "id": "GDS4458_10" }, { "dataset_id": "GDS4458", "description": "1503", "sample_id": [ "GSM785990", "GSM785991" ], "type": "individual", "id": "GDS4458_11" }, { "dataset_id": "GDS4458", "description": "1507", "sample_id": [ "GSM785992", "GSM785993" ], "type": "individual", "id": "GDS4458_12" }, { "dataset_id": "GDS4458", "description": "1610", "sample_id": [ "GSM785977", "GSM785978" ], "type": "individual", "id": "GDS4458_13" }, { "dataset_id": "GDS4458", "description": "1611", "sample_id": [ "GSM785979" ], "type": "individual", "id": "GDS4458_14" }, { "dataset_id": "GDS4458", "description": "1613", "sample_id": [ "GSM785994", "GSM785995" ], "type": "individual", "id": "GDS4458_15" }, { "dataset_id": "GDS4458", "description": "1614", "sample_id": [ "GSM785996", "GSM785997" ], "type": "individual", "id": "GDS4458_16" }, { "dataset_id": "GDS4458", "description": "1615", "sample_id": [ "GSM785980", "GSM785981" ], "type": "individual", "id": "GDS4458_17" }, { "dataset_id": "GDS4458", "description": "1702", "sample_id": [ "GSM785998", "GSM785999" ], "type": "individual", "id": "GDS4458_18" }, { "dataset_id": "GDS4458", "description": "1704", "sample_id": [ "GSM786000" ], "type": "individual", "id": "GDS4458_19" }, { "dataset_id": "GDS4458", "description": "1710", "sample_id": [ "GSM785982", "GSM785983" ], "type": "individual", "id": "GDS4458_20" }, { "dataset_id": "GDS4458", "description": "1803", "sample_id": [ "GSM785984" ], "type": "individual", "id": "GDS4458_21" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4458", "version": 1.0, "instances": "30", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4458.tab", "compression": "gz" } ], [ [ "GDS4459.tab" ], { "title": "Intraportal tacrolimus flushing effect on liver allograft", "description": "Analysis of wedge biopsies from hepatic allografts perfused intraportally with tacrolimus before transplantation. Tacrolimus, a calcineurin inhibitor, ameliorates ischemic reperfusion injury. Results provide insight into the effect of tacrolimus on the inflammatory response of the donor graft.", "type": "Expression profiling by array", "pubmed_id": "21672049", "platform": "GPL11209", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22197", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE25338", "order": "none", "update_date": "Jun 01 2013", "subsets": [ { "dataset_id": "GDS4459", "description": "flushed with tacrolimus", "sample_id": [ "GSM623464", "GSM623473", "GSM623465", "GSM623466", "GSM623467", "GSM623468", "GSM623469", "GSM623470", "GSM623471", "GSM623472" ], "type": "protocol", "id": "GDS4459_1" }, { "dataset_id": "GDS4459", "description": "flushed with albumin control", "sample_id": [ "GSM623474", "GSM623475", "GSM623476", "GSM623477", "GSM623478", "GSM623479", "GSM623480" ], "type": "protocol", "id": "GDS4459_2" } ], "taxid": "9606", "genes": 22163, "aggregation_function": "mean", "name": "GDS4459", "version": 1.0, "instances": "17", "variables": 22165, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4459.tab", "compression": "gz" } ], [ [ "GDS446.tab" ], { "title": "Cardiac hypertrophy and phosphoinositide 3-kinase", "description": "Analysis of the relationship between cardiac hypertrophy/cell size regulation with phosphoinositide 3-kinase (PI3K) signaling pathway. Constitutively active (caPI3K - hearts 20% larger) and dominant-negative (dnPI3K - hearts 17% smaller) mice examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE558", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS446", "description": "caPI3K", "sample_id": [ "GSM8519", "GSM8520", "GSM8521" ], "type": "strain", "id": "GDS446_1" }, { "dataset_id": "GDS446", "description": "dnPI3K", "sample_id": [ "GSM8522", "GSM8523", "GSM8524" ], "type": "strain", "id": "GDS446_2" }, { "dataset_id": "GDS446", "description": "wild type", "sample_id": [ "GSM8525", "GSM8526", "GSM8527" ], "type": "strain", "id": "GDS446_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS446", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS446.tab", "compression": "gz" } ], [ [ "GDS4460.tab" ], { "title": "Pimecrolimus and betamethasone valerate effects on lesional skin of actopic dermatitis", "description": "Analysis of skin biopsies from AD patients treated with pimecrolimus on 1 upper limb and betamethasone (BM) on the other upper limb. BM is clinically more effective but does not restore the skin barrier, compared to pimecrolimus. Results provide insight into mechanisms of action of both substances.", "type": "Expression profiling by array", "pubmed_id": "22142306", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE32473", "order": "none", "update_date": "Jun 01 2013", "subsets": [ { "dataset_id": "GDS4460", "description": "baseline", "sample_id": [ "GSM803592", "GSM803589", "GSM803586", "GSM803613", "GSM803610", "GSM803607", "GSM803604", "GSM803601", "GSM803598", "GSM803595" ], "type": "protocol", "id": "GDS4460_1" }, { "dataset_id": "GDS4460", "description": "pimecrolimus", "sample_id": [ "GSM803593", "GSM803590", "GSM803587", "GSM803614", "GSM803611", "GSM803608", "GSM803605", "GSM803602", "GSM803599", "GSM803596" ], "type": "protocol", "id": "GDS4460_2" }, { "dataset_id": "GDS4460", "description": "betamethasone", "sample_id": [ "GSM803591", "GSM803588", "GSM803585", "GSM803612", "GSM803609", "GSM803606", "GSM803603", "GSM803600", "GSM803597", "GSM803594" ], "type": "protocol", "id": "GDS4460_3" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 0", "sample_id": [ "GSM803586", "GSM803587", "GSM803589", "GSM803590", "GSM803591", "GSM803592", "GSM803593", "GSM803595", "GSM803598", "GSM803601", "GSM803604", "GSM803605", "GSM803607", "GSM803608", "GSM803610", "GSM803613" ], "type": "disease state", "id": "GDS4460_4" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 11", "sample_id": [ "GSM803599" ], "type": "disease state", "id": "GDS4460_5" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 25", "sample_id": [ "GSM803609" ], "type": "disease state", "id": "GDS4460_6" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 33", "sample_id": [ "GSM803611" ], "type": "disease state", "id": "GDS4460_7" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 43", "sample_id": [ "GSM803597" ], "type": "disease state", "id": "GDS4460_8" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 50", "sample_id": [ "GSM803614" ], "type": "disease state", "id": "GDS4460_9" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 60", "sample_id": [ "GSM803602" ], "type": "disease state", "id": "GDS4460_10" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 75", "sample_id": [ "GSM803585", "GSM803612", "GSM803603" ], "type": "disease state", "id": "GDS4460_11" }, { "dataset_id": "GDS4460", "description": "pEASI reduction [%]: 100", "sample_id": [ "GSM803588", "GSM803594", "GSM803596", "GSM803600", "GSM803606" ], "type": "disease state", "id": "GDS4460_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4460", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4460.tab", "compression": "gz" } ], [ [ "GDS4461.tab" ], { "title": "Endothelial cells from P8 neonatal retina [MG_U74Av2]", "description": "Analysis of FACS-sorted, GFP-positive endothelial cells from retinas of postnatal day 8 (P8) homozygous Tie2-GFP transgenics. Deregulated retinal angiogenesis causes vision loss in many ocular diseases. Results provide insight into the molecular mechanisms underlying intraretinal angiogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21505259", "23029280" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE27238", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4461", "description": "endothelial cell", "sample_id": [ "GSM673567", "GSM673568", "GSM673569" ], "type": "cell type", "id": "GDS4461_1" }, { "dataset_id": "GDS4461", "description": "control", "sample_id": [ "GSM673570", "GSM673571", "GSM673572" ], "type": "cell type", "id": "GDS4461_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS4461", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4461.tab", "compression": "gz" } ], [ [ "GDS4462.tab" ], { "title": "Endothelial cells from P8 neonatal retina [MG_U74Bv2]", "description": "Analysis of FACS-sorted, GFP-positive endothelial cells from retinas of postnatal day 8 (P8) homozygous Tie2-GFP transgenics. Deregulated retinal angiogenesis causes vision loss in many ocular diseases. Results provide insight into the molecular mechanisms underlying intraretinal angiogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21505259", "23029280" ], "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE27238", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4462", "description": "endothelial cell", "sample_id": [ "GSM673573", "GSM673574", "GSM673575" ], "type": "cell type", "id": "GDS4462_1" }, { "dataset_id": "GDS4462", "description": "control", "sample_id": [ "GSM673576", "GSM673577", "GSM673578" ], "type": "cell type", "id": "GDS4462_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS4462", "version": 1.0, "instances": "6", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4462.tab", "compression": "gz" } ], [ [ "GDS4463.tab" ], { "title": "Endothelial cells from P8 neonatal retina [MG_U74Cv2]", "description": "Analysis of FACS-sorted, GFP-positive endothelial cells from retinas of postnatal day 8 (P8) homozygous Tie2-GFP transgenics. Deregulated retinal angiogenesis causes vision loss in many ocular diseases. Results provide insight into the molecular mechanisms underlying intraretinal angiogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "21505259", "23029280" ], "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE27238", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4463", "description": "endothelial cell", "sample_id": [ "GSM673579", "GSM673580", "GSM673581" ], "type": "cell type", "id": "GDS4463_1" }, { "dataset_id": "GDS4463", "description": "control", "sample_id": [ "GSM673582", "GSM673583", "GSM673584" ], "type": "cell type", "id": "GDS4463_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS4463", "version": 1.0, "instances": "6", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4463.tab", "compression": "gz" } ], [ [ "GDS4464.tab" ], { "title": "Primary central nervous system lymphoma patients: brain tumor", "description": "Analysis of brain tumor tissue from primary central nervous system lymphoma (PCNSL) patients. PCNSL is an extranodal form of non-Hodgkin lymphoma that arises in the craniospinal axis. Results provide insight into the molecular mechanisms underlying survival in patients with PCNSL.", "type": "Expression profiling by array", "pubmed_id": "22908096", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "log2 ratio", "reference_series": "GSE34771", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4464", "description": "female", "sample_id": [ "GSM854947", "GSM854956", "GSM854971", "GSM854974", "GSM854949", "GSM854958", "GSM854969", "GSM854961", "GSM854975", "GSM854946", "GSM854950", "GSM854955", "GSM854959", "GSM854964", "GSM854972" ], "type": "gender", "id": "GDS4464_1" }, { "dataset_id": "GDS4464", "description": "male", "sample_id": [ "GSM854967", "GSM854945", "GSM854948", "GSM854966", "GSM854968", "GSM854944", "GSM854951", "GSM854962", "GSM854963", "GSM854942", "GSM854943", "GSM854953", "GSM854957", "GSM854960", "GSM854965", "GSM854970", "GSM854973", "GSM854952", "GSM854954" ], "type": "gender", "id": "GDS4464_2" }, { "dataset_id": "GDS4464", "description": "44 years", "sample_id": [ "GSM854968" ], "type": "age", "id": "GDS4464_3" }, { "dataset_id": "GDS4464", "description": "47 years", "sample_id": [ "GSM854954" ], "type": "age", "id": "GDS4464_4" }, { "dataset_id": "GDS4464", "description": "50 years", "sample_id": [ "GSM854970" ], "type": "age", "id": "GDS4464_5" }, { "dataset_id": "GDS4464", "description": "55 years", "sample_id": [ "GSM854944" ], "type": "age", "id": "GDS4464_6" }, { "dataset_id": "GDS4464", "description": "57 years", "sample_id": [ "GSM854958", "GSM854962" ], "type": "age", "id": "GDS4464_7" }, { "dataset_id": "GDS4464", "description": "58 years", "sample_id": [ "GSM854953" ], "type": "age", "id": "GDS4464_8" }, { "dataset_id": "GDS4464", "description": "59 years", "sample_id": [ "GSM854956", "GSM854964" ], "type": "age", "id": "GDS4464_9" }, { "dataset_id": "GDS4464", "description": "62 years", "sample_id": [ "GSM854945", "GSM854960" ], "type": "age", "id": "GDS4464_10" }, { "dataset_id": "GDS4464", "description": "63 years", "sample_id": [ "GSM854947", "GSM854966", "GSM854963" ], "type": "age", "id": "GDS4464_11" }, { "dataset_id": "GDS4464", "description": "64 years", "sample_id": [ "GSM854965", "GSM854973" ], "type": "age", "id": "GDS4464_12" }, { "dataset_id": "GDS4464", "description": "65 years", "sample_id": [ "GSM854942" ], "type": "age", "id": "GDS4464_13" }, { "dataset_id": "GDS4464", "description": "66 years", "sample_id": [ "GSM854950" ], "type": "age", "id": "GDS4464_14" }, { "dataset_id": "GDS4464", "description": "67 years", "sample_id": [ "GSM854974" ], "type": "age", "id": "GDS4464_15" }, { "dataset_id": "GDS4464", "description": "68 years", "sample_id": [ "GSM854969", "GSM854961", "GSM854975", "GSM854955", "GSM854959", "GSM854951" ], "type": "age", "id": "GDS4464_16" }, { "dataset_id": "GDS4464", "description": "69 years", "sample_id": [ "GSM854952" ], "type": "age", "id": "GDS4464_17" }, { "dataset_id": "GDS4464", "description": "70 years", "sample_id": [ "GSM854949", "GSM854948" ], "type": "age", "id": "GDS4464_18" }, { "dataset_id": "GDS4464", "description": "71 years", "sample_id": [ "GSM854971", "GSM854946" ], "type": "age", "id": "GDS4464_19" }, { "dataset_id": "GDS4464", "description": "72 years", "sample_id": [ "GSM854972" ], "type": "age", "id": "GDS4464_20" }, { "dataset_id": "GDS4464", "description": "73 years", "sample_id": [ "GSM854943" ], "type": "age", "id": "GDS4464_21" }, { "dataset_id": "GDS4464", "description": "74 years", "sample_id": [ "GSM854957" ], "type": "age", "id": "GDS4464_22" }, { "dataset_id": "GDS4464", "description": "76 years", "sample_id": [ "GSM854967" ], "type": "age", "id": "GDS4464_23" }, { "dataset_id": "GDS4464", "description": "KPS 40", "sample_id": [ "GSM854961", "GSM854971" ], "type": "other", 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"GSM854960", "GSM854951", "GSM854949", "GSM854945" ], "type": "other", "id": "GDS4464_30" }, { "dataset_id": "GDS4464", "description": "HD-MTX", "sample_id": [ "GSM854968", "GSM854970", "GSM854958", "GSM854962", "GSM854964", "GSM854966", "GSM854965", "GSM854973", "GSM854974", "GSM854969", "GSM854961", "GSM854975", "GSM854971", "GSM854972", "GSM854957", "GSM854967" ], "type": "agent", "id": "GDS4464_31" }, { "dataset_id": "GDS4464", "description": "Polychemo", "sample_id": [ "GSM854944", "GSM854953", "GSM854956", "GSM854960", "GSM854947", "GSM854942", "GSM854950", "GSM854955", "GSM854959", "GSM854951", "GSM854949", "GSM854948", "GSM854946", "GSM854943" ], "type": "agent", "id": "GDS4464_32" }, { "dataset_id": "GDS4464", "description": "n/a", "sample_id": [ "GSM854954", "GSM854945", "GSM854963", "GSM854952" ], "type": "agent", "id": "GDS4464_33" }, { "dataset_id": "GDS4464", "description": "survival <1 year", "sample_id": [ "GSM854975", "GSM854944", "GSM854951", "GSM854962", "GSM854961", 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"http://file.biolab.si/geo/GDS4464.tab", "compression": "gz" } ], [ [ "GDS4465.tab" ], { "title": "High grade astrocytoma patient survival: brain tumor", "description": "Analysis of surgical brain tumors from high grade astrocytoma (HGA) patients with known clinical outcomes. Increased expression of immune function-related genes was positively correlated with longer survival. Results provide insight into molecular profiles associated with long-term survival in HGA.", "type": "Expression profiling by array", "pubmed_id": "22802421", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE33331", "order": "ordered", "update_date": "May 06 2013", "subsets": [ { "dataset_id": "GDS4465", "description": "1 month", "sample_id": [ "GSM824277", "GSM824283", "GSM824286" ], "type": "time", "id": "GDS4465_1" }, { "dataset_id": "GDS4465", "description": "1.5 months", "sample_id": [ "GSM824293" ], "type": "time", "id": "GDS4465_2" }, { "dataset_id": "GDS4465", "description": "2 months", "sample_id": [ "GSM824275", "GSM824281" ], "type": "time", "id": "GDS4465_3" }, { "dataset_id": "GDS4465", "description": "5 months", "sample_id": [ "GSM824276", "GSM824285" ], "type": "time", "id": "GDS4465_4" }, { "dataset_id": "GDS4465", "description": "8 months", "sample_id": [ "GSM824284" ], "type": "time", "id": "GDS4465_5" }, { "dataset_id": "GDS4465", "description": "11 months", "sample_id": [ "GSM824290", "GSM824295" ], "type": "time", "id": "GDS4465_6" }, { "dataset_id": "GDS4465", "description": "12 months", "sample_id": [ "GSM824273" ], "type": "time", "id": "GDS4465_7" }, { "dataset_id": "GDS4465", "description": "13 months", "sample_id": [ "GSM824294" ], "type": "time", "id": "GDS4465_8" }, { "dataset_id": "GDS4465", "description": "14 months", "sample_id": [ "GSM824291" ], "type": "time", "id": "GDS4465_9" }, { "dataset_id": "GDS4465", "description": "16 months", "sample_id": [ "GSM824279" ], "type": "time", "id": "GDS4465_10" }, { "dataset_id": "GDS4465", "description": "17 months", "sample_id": [ "GSM824278" ], "type": "time", "id": "GDS4465_11" }, { "dataset_id": "GDS4465", "description": "18 months", "sample_id": [ "GSM824280" ], "type": "time", "id": "GDS4465_12" }, { "dataset_id": "GDS4465", "description": "20 months", "sample_id": [ "GSM824292" ], "type": "time", "id": "GDS4465_13" }, { "dataset_id": "GDS4465", "description": "29 months", "sample_id": [ "GSM824274" ], "type": "time", "id": "GDS4465_14" }, { "dataset_id": "GDS4465", "description": "30 months", "sample_id": [ "GSM824282" ], "type": "time", "id": "GDS4465_15" }, { "dataset_id": "GDS4465", "description": "31 months", "sample_id": [ "GSM824289" ], "type": "time", "id": "GDS4465_16" }, { "dataset_id": "GDS4465", "description": "32 months", "sample_id": [ "GSM824288" ], "type": "time", "id": "GDS4465_17" }, { "dataset_id": "GDS4465", "description": "40 months", "sample_id": [ "GSM824287" ], "type": "time", "id": "GDS4465_18" }, { "dataset_id": "GDS4465", "description": "70 months", "sample_id": [ "GSM824297" ], "type": "time", "id": "GDS4465_19" }, { "dataset_id": "GDS4465", "description": "82 months", "sample_id": [ "GSM824296" ], "type": "time", "id": "GDS4465_20" }, { "dataset_id": "GDS4465", "description": "95 months", "sample_id": [ "GSM824298" ], "type": "time", "id": "GDS4465_21" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4465", "version": 1.0, "instances": "26", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4465.tab", "compression": "gz" } ], [ [ "GDS4466.tab" ], { "title": "MYC oncogene overexpression and silencing effect in medulloblastoma DAOY cells", "description": "Analysis of medulloblastoma (MB)-derived cell lines genetically manipulated to either overexpress or silence the MYC oncogene. MYC overexpression and/or amplification is associated with poor clinical outcome. Results provide insight into transcriptional targets mediating the effects of MYC in MB.", "type": "Expression profiling by array", "pubmed_id": "21317922", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE22139", "order": "none", "update_date": "Dec 05 2013", "subsets": [ { "dataset_id": "GDS4466", "description": "no modification (wild type)", "sample_id": [ "GSM550686", "GSM550687", "GSM550688" ], "type": "protocol", "id": "GDS4466_1" }, { "dataset_id": "GDS4466", "description": "pEGFP (empty) vector-transfected", "sample_id": [ "GSM550692", "GSM550693", "GSM550694" ], "type": "protocol", "id": "GDS4466_2" }, { "dataset_id": "GDS4466", "description": "pMYCEGFP vector-transfected", "sample_id": [ "GSM550695", "GSM550696", "GSM550697", "GSM550689", "GSM550690", "GSM550691" ], "type": "protocol", "id": "GDS4466_3" }, { "dataset_id": "GDS4466", "description": "siRNA scrambled", "sample_id": [ "GSM550698", "GSM550699", "GSM550700" ], "type": "protocol", "id": "GDS4466_4" }, { "dataset_id": "GDS4466", "description": "siRNA cMYC silenced", "sample_id": [ "GSM550701", "GSM550702", "GSM550703" ], "type": "protocol", "id": "GDS4466_5" }, { "dataset_id": "GDS4466", "description": "DAOY", "sample_id": [ "GSM550686", "GSM550687", "GSM550688" ], "type": "cell line", "id": "GDS4466_6" }, { "dataset_id": "GDS4466", "description": "DAOY V11", "sample_id": [ "GSM550692", "GSM550693", "GSM550694" ], "type": "cell line", "id": "GDS4466_7" }, { "dataset_id": "GDS4466", "description": "DAOY M14", "sample_id": [ "GSM550695", "GSM550696", "GSM550697" ], "type": "cell line", "id": "GDS4466_8" }, { "dataset_id": "GDS4466", "description": "DAOY M2.1", "sample_id": [ "GSM550689", "GSM550690", "GSM550691", "GSM550698", "GSM550699", "GSM550700", "GSM550701", "GSM550702", "GSM550703" ], "type": "cell line", "id": "GDS4466_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4466", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4466.tab", "compression": "gz" } ], [ [ "GDS4467.tab" ], { "title": "Primary and secondary brain tumors: glioblastomas, astrocytomas and oligodendrogliomas", "description": "Analysis of primary glioblastomas (GBM), astrocytomas, oligodendrogliomas and secondary GBM brain tumors. MNK1 kinase upregulation observed in primary GBM brain tumors. Results identifiy signaling pathways differentially regulated in gliomas.", "type": "Expression profiling by array", "pubmed_id": "21406405", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "count", "reference_series": "GSE15824", "order": "none", "update_date": "May 20 2013", "subsets": [ { "dataset_id": "GDS4467", "description": "primary tumor", "sample_id": [ "GSM397626", "GSM397627", "GSM397628", "GSM397629", "GSM397630", "GSM397631", "GSM397632", "GSM397633", "GSM397634", "GSM397635", "GSM397636", "GSM397637", "GSM397638", "GSM397639", "GSM397640", "GSM397641", "GSM397642", "GSM397643", "GSM397644", "GSM397645", "GSM397646", "GSM397647", "GSM397648", "GSM397649", "GSM397650", "GSM397651", "GSM397652" ], "type": "tissue", "id": "GDS4467_1" }, { "dataset_id": "GDS4467", "description": "secondary tumor", "sample_id": [ "GSM397653", "GSM397654", "GSM397655" ], "type": "tissue", "id": "GDS4467_2" }, { "dataset_id": "GDS4467", "description": "normal brain", "sample_id": [ "GSM397656", "GSM397657", "GSM397658", "GSM397659", "GSM397660" ], "type": "tissue", "id": "GDS4467_3" }, { "dataset_id": "GDS4467", "description": "oligodendrioglioma", "sample_id": [ "GSM397646", "GSM397647", "GSM397648", "GSM397649", "GSM397650", "GSM397651", "GSM397652" ], "type": "cell type", "id": "GDS4467_4" }, { "dataset_id": "GDS4467", "description": "astrocytoma", "sample_id": [ "GSM397638", "GSM397639", "GSM397640", "GSM397641", "GSM397642", "GSM397643", "GSM397644", "GSM397645" ], "type": "cell type", "id": "GDS4467_5" }, { "dataset_id": "GDS4467", "description": "glioblastoma", "sample_id": [ "GSM397653", "GSM397654", "GSM397655", "GSM397626", "GSM397627", "GSM397628", "GSM397629", "GSM397630", "GSM397631", "GSM397632", "GSM397633", "GSM397634", "GSM397635", "GSM397636", "GSM397637" ], "type": "cell type", "id": "GDS4467_6" }, { "dataset_id": "GDS4467", "description": "astrocytes", "sample_id": [ "GSM397656", "GSM397657", "GSM397658" ], "type": "cell type", "id": "GDS4467_7" }, { "dataset_id": "GDS4467", "description": "brain control", "sample_id": [ "GSM397659", "GSM397660" ], "type": "cell type", "id": "GDS4467_8" }, { "dataset_id": "GDS4467", "description": "grade: OGII", "sample_id": [ "GSM397648", "GSM397649", "GSM397652" ], "type": "other", "id": "GDS4467_9" }, { "dataset_id": "GDS4467", "description": "grade: OGIII", "sample_id": [ "GSM397646", "GSM397650", "GSM397651" ], "type": "other", "id": "GDS4467_10" }, { "dataset_id": "GDS4467", "description": "grade: OA", "sample_id": [ "GSM397647" ], "type": "other", "id": "GDS4467_11" }, { "dataset_id": "GDS4467", "description": "grade: AII", "sample_id": [ "GSM397639", "GSM397640", "GSM397642", "GSM397643" ], "type": "other", "id": "GDS4467_12" }, { "dataset_id": "GDS4467", "description": "grade: AIII", "sample_id": [ "GSM397638", "GSM397641", "GSM397645" ], "type": "other", "id": "GDS4467_13" }, { "dataset_id": "GDS4467", "description": "grade: AIII/IV", "sample_id": [ "GSM397644" ], "type": "other", "id": "GDS4467_14" }, { "dataset_id": "GDS4467", "description": "grade: IV", "sample_id": [ "GSM397626", "GSM397627", "GSM397628", "GSM397629", "GSM397630", "GSM397631", "GSM397632", "GSM397633", "GSM397634", "GSM397635", "GSM397636", "GSM397637", "GSM397653", "GSM397654", "GSM397655" ], "type": "other", "id": "GDS4467_15" }, { "dataset_id": "GDS4467", "description": "grade: n/a", "sample_id": [ "GSM397656", "GSM397657", "GSM397658", "GSM397659", "GSM397660" ], "type": "other", "id": "GDS4467_16" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4467", "version": 1.0, "instances": "35", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4467.tab", "compression": "gz" } ], [ [ "GDS4468.tab" ], { "title": "Glioblastoma cell lines: LN018, LN215, LN229, LN319 and BS149", "description": "Analysis of 5 glioblastoma cell lines (LN018, LN215, LN229, LN319 and BS149). Results provide insight into molecular mechanisms underlying glioblastoma multiforme and other aggressive brain cancers.", "type": "Expression profiling by array", "pubmed_id": "21406405", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE15824", "order": "none", "update_date": "May 20 2013", "subsets": [ { "dataset_id": "GDS4468", "description": "LN018", "sample_id": [ "GSM397661", "GSM397662" ], "type": "cell line", "id": "GDS4468_1" }, { "dataset_id": "GDS4468", "description": "LN215", "sample_id": [ "GSM397663", "GSM397664" ], "type": "cell line", "id": "GDS4468_2" }, { "dataset_id": "GDS4468", "description": "LN229", "sample_id": [ "GSM397665", "GSM397666" ], "type": "cell line", "id": "GDS4468_3" }, { "dataset_id": "GDS4468", "description": "LN319", "sample_id": [ "GSM397667", "GSM397668" ], "type": "cell line", "id": "GDS4468_4" }, { "dataset_id": "GDS4468", "description": "BS149", "sample_id": [ "GSM397669", "GSM397670" ], "type": "cell line", "id": "GDS4468_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4468", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4468.tab", "compression": "gz" } ], [ [ "GDS4469.tab" ], { "title": "Sporadic medulloblastomas", "description": "Analysis of sporadic medulloblastomas (MB), tumor grade IV from pediatric patients. Medulloblastoma is a highly malignant brain tumor occurring predominantly in children. Results provide insight into the molecular mechanisms underlying the pathogenesis of MB.", "type": "Expression profiling by array", "pubmed_id": "21358093", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE41842", "order": "none", "update_date": "Dec 05 2013", "subsets": [ { "dataset_id": "GDS4469", "description": "no metastasis", "sample_id": [ "GSM1025532", "GSM1025530", "GSM1025531", "GSM1025541", "GSM1025542", "GSM1025544", "GSM1025545", "GSM1025543", "GSM1025546", "GSM1025528", "GSM1025534", "GSM1025535", "GSM1025536", "GSM1025537", "GSM1025540" ], "type": "disease state", "id": "GDS4469_1" }, { "dataset_id": "GDS4469", "description": "metastasis at diagnosis", "sample_id": [ "GSM1025533", "GSM1025538" ], "type": "disease state", "id": "GDS4469_2" }, { "dataset_id": "GDS4469", "description": "recurrent tumor", "sample_id": [ "GSM1025529", "GSM1025539" ], "type": "disease state", "id": "GDS4469_3" }, { "dataset_id": "GDS4469", "description": "male", "sample_id": [ "GSM1025529", "GSM1025530", "GSM1025531", "GSM1025532", "GSM1025533", "GSM1025535", "GSM1025537", "GSM1025538", "GSM1025539", "GSM1025542", "GSM1025543", "GSM1025544", "GSM1025545", "GSM1025546" ], "type": "gender", "id": "GDS4469_4" }, { "dataset_id": "GDS4469", "description": "female", "sample_id": [ "GSM1025528", "GSM1025534", "GSM1025536", "GSM1025540", "GSM1025541" ], "type": "gender", "id": "GDS4469_5" }, { "dataset_id": "GDS4469", "description": "3-8 years", "sample_id": [ "GSM1025540", "GSM1025539", "GSM1025546", "GSM1025532", "GSM1025538", "GSM1025529", "GSM1025530", "GSM1025531" ], "type": "age", "id": "GDS4469_6" }, { "dataset_id": "GDS4469", "description": "9-17 years", "sample_id": [ "GSM1025528", "GSM1025534", "GSM1025535", "GSM1025545", "GSM1025544", "GSM1025533", "GSM1025541" ], "type": "age", "id": "GDS4469_7" }, { "dataset_id": "GDS4469", "description": "18 years and above", "sample_id": [ "GSM1025542", "GSM1025543", "GSM1025536", "GSM1025537" ], "type": "age", "id": "GDS4469_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4469", "version": 1.0, "instances": "19", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4469.tab", "compression": "gz" } ], [ [ "GDS4470.tab" ], { "title": "Glioblastoma brain tumors", "description": "Analysis of glioblastoma (GBM) tumors from different regions of the brain from patients of various ages. Mutations in H3F3A and IDH1 define distinct epigenetic and biological subgroups of GBM. Results provide insight into heterogeneity of GBM and oncogenic pathways leading to gliomagenesis.", "type": "Expression profiling by array", "pubmed_id": "23079654", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE36245", "order": "none", "update_date": "May 20 2013", "subsets": [ { "dataset_id": "GDS4470", "description": "subgroup: IDH", "sample_id": [ "GSM885003", "GSM885004", "GSM885012", "GSM885015", "GSM885019", "GSM885020", "GSM885021" ], "type": "disease state", "id": "GDS4470_1" }, { "dataset_id": "GDS4470", "description": "subgroup: K27", "sample_id": [ "GSM884997", "GSM885000", "GSM885011", "GSM958490", "GSM958493" ], "type": "disease state", "id": "GDS4470_2" }, { "dataset_id": "GDS4470", "description": "subgroup: G34", "sample_id": [ "GSM884999", "GSM885016", "GSM958491", "GSM958492" ], "type": "disease state", "id": "GDS4470_3" }, { "dataset_id": "GDS4470", "description": "subgroup: RTK I", "sample_id": [ "GSM884998", "GSM885007", "GSM885008", "GSM885009", "GSM885013", "GSM885017" ], "type": "disease state", "id": "GDS4470_4" }, { "dataset_id": "GDS4470", "description": "subgroup: Mesenchymal", "sample_id": [ "GSM885001", "GSM885005", "GSM885006", "GSM885010", "GSM885014" ], "type": "disease state", "id": "GDS4470_5" }, { "dataset_id": "GDS4470", "description": "subgroup: RTK II", "sample_id": [ "GSM885002", "GSM885018", "GSM885022" ], "type": "disease state", "id": "GDS4470_6" }, { "dataset_id": "GDS4470", "description": "subgroup: NA", "sample_id": [ "GSM885023", "GSM885024", "GSM885025", "GSM885026", "GSM885027", "GSM885028", "GSM885029", "GSM885030", "GSM885031", "GSM958494", "GSM958495", "GSM958496", "GSM958497", "GSM958498", "GSM958499", "GSM958500" ], "type": "disease state", "id": "GDS4470_7" }, { "dataset_id": "GDS4470", "description": "H3F3a: G34R", "sample_id": [ "GSM884999", "GSM885016", "GSM958491", "GSM958492", "GSM885030", "GSM958498" ], "type": "genotype/variation", "id": "GDS4470_8" }, { "dataset_id": "GDS4470", "description": "H3F3a: G34V", "sample_id": [ "GSM885029" ], "type": "genotype/variation", "id": "GDS4470_9" }, { "dataset_id": "GDS4470", "description": "H3F3a: K27M", "sample_id": [ "GSM884997", "GSM885000", "GSM885011", "GSM958490", "GSM958493", "GSM885023", "GSM958497" ], "type": "genotype/variation", "id": "GDS4470_10" }, { "dataset_id": "GDS4470", "description": "H3F3a: NA", "sample_id": [ "GSM885026", "GSM885027" ], "type": "genotype/variation", "id": "GDS4470_11" }, { "dataset_id": "GDS4470", "description": "H3F3a: WT", "sample_id": [ "GSM885003", "GSM885004", "GSM885012", "GSM885015", "GSM885019", "GSM885020", "GSM885021", "GSM885001", "GSM885005", "GSM885006", "GSM885010", "GSM885014", "GSM885024", "GSM885025", "GSM885028", "GSM885031", "GSM958494", "GSM958495", "GSM958496", "GSM958499", "GSM958500", "GSM884998", "GSM885007", "GSM885008", "GSM885009", "GSM885013", "GSM885017", "GSM885002", "GSM885018", "GSM885022" ], "type": "genotype/variation", "id": "GDS4470_12" }, { "dataset_id": "GDS4470", "description": "IDH1: MUT", "sample_id": [ "GSM885003", "GSM885004", "GSM885012", "GSM885015", "GSM885019", "GSM885020", "GSM885021", "GSM885006", "GSM885028", "GSM958499" ], "type": "other", "id": "GDS4470_13" }, { "dataset_id": "GDS4470", "description": "IDH1: NA", "sample_id": [ "GSM885030", "GSM885029", "GSM885026", "GSM885027", "GSM885024", "GSM885025", "GSM885031" ], "type": "other", "id": "GDS4470_14" }, { "dataset_id": "GDS4470", "description": "IDH1: WT", "sample_id": [ "GSM884999", "GSM885016", "GSM958491", "GSM958492", "GSM958498", "GSM884997", "GSM885000", "GSM885011", "GSM958490", "GSM958493", "GSM885023", "GSM958497", "GSM885001", "GSM885005", "GSM885010", "GSM885014", "GSM958494", "GSM958495", "GSM958496", "GSM958500", "GSM884998", "GSM885007", "GSM885008", "GSM885009", "GSM885013", "GSM885017", "GSM885002", "GSM885018", "GSM885022" ], "type": "other", "id": "GDS4470_15" }, { "dataset_id": "GDS4470", "description": "central region", "sample_id": [ "GSM958495" ], "type": "tissue", "id": "GDS4470_16" }, { "dataset_id": "GDS4470", "description": "cerebellar", "sample_id": [ "GSM885013" ], "type": "tissue", "id": "GDS4470_17" }, { "dataset_id": "GDS4470", "description": "frontal lobe", "sample_id": [ "GSM885021", "GSM958491", "GSM885001", "GSM958500", "GSM884998" ], "type": "tissue", "id": "GDS4470_18" }, { "dataset_id": "GDS4470", "description": "frontal/temporal", "sample_id": [ "GSM885007" ], "type": "tissue", "id": "GDS4470_19" }, { "dataset_id": "GDS4470", "description": "hemispheric", "sample_id": [ "GSM885028", "GSM885026" ], "type": "tissue", "id": "GDS4470_20" }, { "dataset_id": "GDS4470", "description": "parietal lobe", "sample_id": [ "GSM958498", "GSM885009" ], "type": "tissue", "id": "GDS4470_21" }, { "dataset_id": "GDS4470", "description": "parieto-occipital", "sample_id": [ "GSM885029" ], "type": "tissue", "id": "GDS4470_22" }, { "dataset_id": "GDS4470", "description": "pons", "sample_id": [ "GSM958493" ], "type": "tissue", "id": "GDS4470_23" }, { "dataset_id": "GDS4470", "description": "temporal lobe", "sample_id": [ "GSM958499", "GSM884999", "GSM885016", "GSM958494", "GSM958496" ], "type": "tissue", "id": "GDS4470_24" }, { "dataset_id": "GDS4470", "description": "temporo-parietal", "sample_id": [ "GSM885030" ], "type": "tissue", "id": "GDS4470_25" }, { "dataset_id": "GDS4470", "description": "thalamic", "sample_id": [ "GSM885000", "GSM885011", "GSM958490" ], "type": "tissue", "id": "GDS4470_26" }, { "dataset_id": "GDS4470", "description": "ventricular", "sample_id": [ "GSM884997" ], "type": "tissue", "id": "GDS4470_27" }, { "dataset_id": "GDS4470", "description": "NA", "sample_id": [ "GSM885003", "GSM885004", "GSM885012", "GSM885015", "GSM885019", "GSM885020", "GSM885006", "GSM885027", "GSM885024", "GSM885025", "GSM885031", "GSM958492", "GSM885023", "GSM958497", "GSM885005", "GSM885010", "GSM885014", "GSM885008", "GSM885017", "GSM885002", "GSM885018", "GSM885022" ], "type": "tissue", "id": "GDS4470_28" }, { "dataset_id": "GDS4470", "description": "year 0", "sample_id": [ "GSM885024", "GSM885025", "GSM885031" ], "type": "age", "id": "GDS4470_29" }, { "dataset_id": "GDS4470", "description": "year 1", "sample_id": [ "GSM885028" ], "type": "age", "id": "GDS4470_30" }, { "dataset_id": "GDS4470", "description": "year 5", "sample_id": [ "GSM958494", "GSM958496" ], "type": "age", "id": "GDS4470_31" }, { "dataset_id": "GDS4470", "description": "year 6", "sample_id": [ "GSM958493" ], "type": "age", "id": "GDS4470_32" }, { "dataset_id": "GDS4470", "description": "year 7", "sample_id": [ "GSM958490" ], "type": "age", "id": "GDS4470_33" }, { "dataset_id": "GDS4470", "description": "year 9", "sample_id": [ "GSM884999", "GSM958497" ], "type": "age", "id": "GDS4470_34" }, { "dataset_id": "GDS4470", "description": "year 10", "sample_id": [ "GSM884997", "GSM884998", "GSM885023" ], "type": "age", "id": "GDS4470_35" }, { "dataset_id": "GDS4470", "description": "year 11", "sample_id": [ "GSM885000" ], "type": "age", "id": "GDS4470_36" }, { "dataset_id": "GDS4470", "description": "year 12", "sample_id": [ "GSM958492" ], "type": "age", "id": "GDS4470_37" }, { "dataset_id": "GDS4470", "description": "year 13", "sample_id": [ "GSM885001" ], "type": "age", "id": "GDS4470_38" }, { "dataset_id": "GDS4470", "description": "year 14", "sample_id": [ "GSM885030", "GSM958495", "GSM958498", "GSM958500" ], "type": "age", "id": "GDS4470_39" }, { "dataset_id": "GDS4470", "description": "year 17", "sample_id": [ "GSM958491" ], "type": "age", "id": "GDS4470_40" }, { "dataset_id": "GDS4470", "description": "year 18", "sample_id": [ "GSM885021" ], "type": "age", "id": "GDS4470_41" }, { "dataset_id": "GDS4470", "description": "year 19", "sample_id": [ "GSM885009", "GSM885029", "GSM958499" ], "type": "age", "id": "GDS4470_42" }, { "dataset_id": "GDS4470", "description": "year 20", "sample_id": [ "GSM885007", "GSM885013" ], "type": "age", "id": "GDS4470_43" }, { "dataset_id": "GDS4470", "description": "year 23", "sample_id": [ "GSM885011" ], "type": "age", "id": "GDS4470_44" }, { "dataset_id": "GDS4470", "description": "year 25", "sample_id": [ "GSM885019" ], "type": "age", "id": "GDS4470_45" }, { "dataset_id": "GDS4470", "description": "year 32", "sample_id": [ "GSM885004" ], "type": "age", "id": "GDS4470_46" }, { "dataset_id": "GDS4470", "description": "year 33", "sample_id": [ "GSM885012", "GSM885017" ], "type": "age", "id": "GDS4470_47" }, { "dataset_id": "GDS4470", "description": "year 34", "sample_id": [ "GSM885006" ], "type": "age", "id": "GDS4470_48" }, { "dataset_id": "GDS4470", "description": "year 36", "sample_id": [ "GSM885008", "GSM885010", "GSM885022" ], "type": "age", "id": "GDS4470_49" }, { "dataset_id": "GDS4470", "description": "year 38", "sample_id": [ "GSM885002", "GSM885014", "GSM885020" ], "type": "age", "id": "GDS4470_50" }, { "dataset_id": "GDS4470", "description": "year 40", "sample_id": [ "GSM885003", "GSM885018" ], "type": "age", "id": "GDS4470_51" }, { "dataset_id": "GDS4470", "description": "year 42", "sample_id": [ "GSM885016" ], "type": "age", "id": "GDS4470_52" }, { "dataset_id": "GDS4470", "description": "year 46", "sample_id": [ "GSM885005" ], "type": "age", "id": "GDS4470_53" }, { "dataset_id": "GDS4470", "description": "year 48", "sample_id": [ "GSM885015" ], "type": "age", "id": "GDS4470_54" }, { "dataset_id": "GDS4470", "description": "year NA", "sample_id": [ "GSM885026", "GSM885027" ], "type": "age", "id": "GDS4470_55" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4470", "version": 1.0, "instances": "46", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4470.tab", "compression": "gz" } ], [ [ "GDS4471.tab" ], { "title": "Medulloblastomas in children", "description": "Analysis of medulloblastomas from children ages 3 to 16 years. Medulloblastoma is a malignant childhood brain tumor comprising four discrete subgroups. Results provide insights into pathogenesis of medulloblastoma and highlight targets for therapeutic development.", "type": "Expression profiling by array", "pubmed_id": "22722829", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "76", "value_type": "transformed count", "reference_series": "GSE37418", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4471", "description": "subgroup: WNT", "sample_id": [ "GSM918580", "GSM918593", "GSM918603", "GSM918625", "GSM918638", "GSM918641", "GSM918642", "GSM918643" ], "type": "disease state", "id": "GDS4471_1" }, { "dataset_id": "GDS4471", "description": "subgroup: SHH", "sample_id": [ "GSM918582", "GSM918606", "GSM918607", "GSM918608", "GSM918609", "GSM918619", "GSM918620", "GSM918621", "GSM918649", "GSM918651" ], "type": "disease state", "id": "GDS4471_2" }, { "dataset_id": "GDS4471", "description": "subgroup: SHH outlier", "sample_id": [ "GSM918628" ], "type": "disease state", "id": "GDS4471_3" }, { "dataset_id": "GDS4471", "description": "subgroup: G3", "sample_id": [ "GSM918586", "GSM918587", "GSM918588", "GSM918589", "GSM918594", "GSM918600", "GSM918601", "GSM918611", "GSM918612", "GSM918614", "GSM918624", "GSM918629", "GSM918636", "GSM918637", "GSM918639", "GSM918640" ], "type": "disease state", "id": "GDS4471_4" }, { "dataset_id": "GDS4471", "description": "subgroup: G4", "sample_id": [ "GSM918578", "GSM918579", "GSM918581", "GSM918583", "GSM918584", "GSM918585", "GSM918590", "GSM918591", "GSM918592", "GSM918595", "GSM918596", "GSM918597", "GSM918598", "GSM918599", "GSM918602", "GSM918604", "GSM918605", "GSM918610", "GSM918613", "GSM918615", "GSM918616", "GSM918617", "GSM918622", "GSM918623", "GSM918626", "GSM918627", "GSM918630", "GSM918631", "GSM918632", "GSM918633", "GSM918634", "GSM918635", "GSM918645", "GSM918646", "GSM918647", "GSM918648", "GSM918650", "GSM918652", "GSM918653" ], "type": "disease state", "id": "GDS4471_5" }, { "dataset_id": "GDS4471", "description": "subgroup: N/A", "sample_id": [ "GSM918618", "GSM918644" ], "type": "disease state", "id": "GDS4471_6" }, { "dataset_id": "GDS4471", "description": "male", "sample_id": [ "GSM918586", "GSM918587", "GSM918588", "GSM918589", "GSM918594", "GSM918600", "GSM918601", "GSM918611", "GSM918612", "GSM918614", "GSM918624", "GSM918629", "GSM918637", "GSM918639", "GSM918640", "GSM918578", "GSM918579", "GSM918581", "GSM918584", "GSM918590", "GSM918591", "GSM918592", "GSM918597", "GSM918598", "GSM918599", "GSM918604", "GSM918605", "GSM918610", "GSM918613", "GSM918615", "GSM918616", "GSM918623", "GSM918626", "GSM918627", "GSM918632", "GSM918633", "GSM918634", "GSM918635", "GSM918645", "GSM918646", "GSM918647", "GSM918648", "GSM918650", "GSM918652", "GSM918653", "GSM918582", "GSM918619", "GSM918621", "GSM918649", "GSM918651", "GSM918628", "GSM918618", "GSM918603", "GSM918641" ], "type": "gender", "id": "GDS4471_7" }, { "dataset_id": "GDS4471", "description": "female", "sample_id": [ "GSM918636", "GSM918583", "GSM918585", "GSM918595", "GSM918596", "GSM918602", "GSM918617", "GSM918622", "GSM918630", "GSM918631", "GSM918606", "GSM918607", "GSM918608", "GSM918609", "GSM918620", "GSM918644", "GSM918580", "GSM918593", "GSM918625", "GSM918638", "GSM918642", "GSM918643" ], "type": "gender", "id": "GDS4471_8" }, { "dataset_id": "GDS4471", "description": "M stage: MB-AN", "sample_id": [ "GSM918636", "GSM918622", "GSM918607", "GSM918609", "GSM918586", "GSM918594", "GSM918600", "GSM918601", "GSM918612", "GSM918614", "GSM918629", "GSM918590", "GSM918610", "GSM918615", "GSM918616", "GSM918632", "GSM918647" ], "type": "other", "id": "GDS4471_9" }, { "dataset_id": "GDS4471", "description": "M stage: MB-CL", "sample_id": [ "GSM918583", "GSM918585", "GSM918595", "GSM918596", "GSM918602", "GSM918617", "GSM918630", "GSM918631", "GSM918608", "GSM918580", "GSM918593", "GSM918625", "GSM918638", "GSM918642", "GSM918643", "GSM918587", "GSM918588", "GSM918589", "GSM918611", "GSM918624", "GSM918637", "GSM918639", "GSM918640", "GSM918578", "GSM918579", "GSM918581", "GSM918584", "GSM918591", "GSM918592", "GSM918597", "GSM918598", "GSM918599", "GSM918604", "GSM918605", "GSM918613", "GSM918623", "GSM918626", "GSM918627", "GSM918633", "GSM918634", "GSM918635", "GSM918645", "GSM918646", "GSM918648", "GSM918650", "GSM918652", "GSM918653", "GSM918619", "GSM918621", "GSM918603", "GSM918641" ], "type": "other", "id": "GDS4471_10" }, { "dataset_id": "GDS4471", "description": "M stage: MB-DN", "sample_id": [ "GSM918606", "GSM918620", "GSM918582", "GSM918649", "GSM918651", "GSM918628" ], "type": "other", "id": "GDS4471_11" }, { "dataset_id": "GDS4471", "description": "M stage: MB-Myo", "sample_id": [ "GSM918644", "GSM918618" ], "type": "other", "id": "GDS4471_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4471", "version": 1.0, "instances": "76", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4471.tab", "compression": "gz" } ], [ [ "GDS4472.tab" ], { "title": "Transcription factor OTX2 oncogene silencing effect on D425 medulloblastoma cell line: time course", "description": "Analysis of D425 medulloblastoma (MB) cells with doxycyline inducible shRNA against OTX2, sampled 0 to 96 hrs after induction in 3 independent time courses (TC). OTX2 is implicated as an oncogene in childhood MB. Results provide insight into role of OTX2 in medulloblastoma.", "type": "Expression profiling by array", "pubmed_id": "21964830", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE22875", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4472", "description": "OTX2 silencing", "sample_id": [ "GSM565176", "GSM565177", "GSM565178", "GSM565179", "GSM565180", "GSM565181", "GSM565182", "GSM565183", "GSM565184", "GSM565185", "GSM565186", "GSM565187", "GSM565188", "GSM565189", "GSM565190", "GSM565191", "GSM565192", "GSM565193" ], "type": "protocol", "id": "GDS4472_1" }, { "dataset_id": "GDS4472", "description": "control", "sample_id": [ "GSM565194", "GSM565195", "GSM565196", "GSM565197", "GSM565198", "GSM565199" ], "type": "protocol", "id": "GDS4472_2" }, { "dataset_id": "GDS4472", "description": "hour 0", "sample_id": [ "GSM565176", "GSM565182", "GSM565188", "GSM565194" ], "type": "time", "id": "GDS4472_3" }, { "dataset_id": "GDS4472", "description": "hour 8", "sample_id": [ "GSM565177", "GSM565183", "GSM565189", "GSM565195" ], "type": "time", "id": "GDS4472_4" }, { "dataset_id": "GDS4472", "description": "hour 16", "sample_id": [ "GSM565178", "GSM565184", "GSM565190", "GSM565196" ], "type": "time", "id": "GDS4472_5" }, { "dataset_id": "GDS4472", "description": "hour 24", "sample_id": [ "GSM565179", "GSM565185", "GSM565191", "GSM565197" ], "type": "time", "id": "GDS4472_6" }, { "dataset_id": "GDS4472", "description": "hour 48", "sample_id": [ "GSM565180", "GSM565186", "GSM565192", "GSM565198" ], "type": "time", "id": "GDS4472_7" }, { "dataset_id": "GDS4472", "description": "hour 96", "sample_id": [ "GSM565181", "GSM565187", "GSM565193", "GSM565199" ], "type": "time", "id": "GDS4472_8" }, { "dataset_id": "GDS4472", "description": "TC 1", "sample_id": [ "GSM565176", "GSM565177", "GSM565178", "GSM565179", "GSM565180", "GSM565181" ], "type": "other", "id": "GDS4472_9" }, { "dataset_id": "GDS4472", "description": "TC 2", "sample_id": [ "GSM565182", "GSM565183", "GSM565184", "GSM565185", "GSM565186", "GSM565187" ], "type": "other", "id": "GDS4472_10" }, { "dataset_id": "GDS4472", "description": "TC 3", "sample_id": [ "GSM565188", "GSM565189", "GSM565190", "GSM565191", "GSM565192", "GSM565193" ], "type": "other", "id": "GDS4472_11" }, { "dataset_id": "GDS4472", "description": "TC n/a", "sample_id": [ "GSM565194", "GSM565195", "GSM565196", "GSM565197", "GSM565198", "GSM565199" ], "type": "other", "id": "GDS4472_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4472", "version": 1.0, "instances": "24", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4472.tab", "compression": "gz" } ], [ [ "GDS4473.tab" ], { "title": "Glioblastoma multiforme and oligodendroglial glioma: neurospheres", "description": "Analysis of primary neurosphere cultures of glioblastoma (GBM) or oligodendroglial (ODG) tumors from 6 patients. Patient-derived glioma-propagating cells (GPC) contain karyotypic and gene expression profiles that are found in the primary tumor.", "type": "Expression profiling by array", "pubmed_id": "22675171", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE31545", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4473", "description": "neurosphere", "sample_id": [ "GSM782946", "GSM782947", "GSM782948", "GSM782949", "GSM782950", "GSM782951", "GSM782952", "GSM782953", "GSM782954", "GSM782955", "GSM782956", "GSM782957" ], "type": "tissue", "id": "GDS4473_1" }, { "dataset_id": "GDS4473", "description": "tumor", "sample_id": [ "GSM782958", "GSM782959" ], "type": "tissue", "id": "GDS4473_2" }, { "dataset_id": "GDS4473", "description": "Glioblastoma multiforme", "sample_id": [ "GSM782946", "GSM782947", "GSM782948", "GSM782949", "GSM782950", "GSM782951", "GSM782952", "GSM782953", "GSM782954", "GSM782955" ], "type": "disease state", "id": "GDS4473_3" }, { "dataset_id": "GDS4473", "description": "Anaplastic Oligoastrocytoma", "sample_id": [ "GSM782956", "GSM782957", "GSM782958", "GSM782959" ], "type": "disease state", "id": "GDS4473_4" }, { "dataset_id": "GDS4473", "description": "grade: IV", "sample_id": [ "GSM782946", "GSM782947", "GSM782948", "GSM782949", "GSM782950", "GSM782951", "GSM782952", "GSM782953", "GSM782954", "GSM782955" ], "type": "other", "id": "GDS4473_5" }, { "dataset_id": "GDS4473", "description": "grade: III", "sample_id": [ "GSM782956", "GSM782957", "GSM782958", "GSM782959" ], "type": "other", "id": "GDS4473_6" }, { "dataset_id": "GDS4473", "description": "1", "sample_id": [ "GSM782946", "GSM782947" ], "type": "individual", "id": "GDS4473_7" }, { "dataset_id": "GDS4473", "description": "2", "sample_id": [ "GSM782948", "GSM782949" ], "type": "individual", "id": "GDS4473_8" }, { "dataset_id": "GDS4473", "description": "3", "sample_id": [ "GSM782950", "GSM782951" ], "type": "individual", "id": "GDS4473_9" }, { "dataset_id": "GDS4473", "description": "4", "sample_id": [ "GSM782952", "GSM782953" ], "type": "individual", "id": "GDS4473_10" }, { "dataset_id": "GDS4473", "description": "5", "sample_id": [ "GSM782954", "GSM782955" ], "type": "individual", "id": "GDS4473_11" }, { "dataset_id": "GDS4473", "description": "8", "sample_id": [ "GSM782956", "GSM782957", "GSM782958", "GSM782959" ], "type": "individual", "id": "GDS4473_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4473", "version": 1.0, "instances": "14", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4473.tab", "compression": "gz" } ], [ [ "GDS4474.tab" ], { "title": "U373MG glioblastoma cell line response to 3 anti-cancer 1,2,3,4-tetrahydroisoquinoline alkaloids", "description": "Analysis of U373MG glioblastoma cells treated 24 hrs with DMSO or IC50 concentrations of anti-cancer compounds ecteinascidin-770 (ET-770), ET-770 derivative (ET-770-DR) or renieramycin M (RM). Results provide insight into pathways responsible for cytotoxic effects of compounds on glioblastoma.", "type": "Expression profiling by array", "pubmed_id": "22494416", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE36619", "order": "none", "update_date": "May 21 2013", "subsets": [ { "dataset_id": "GDS4474", "description": "ET-770", "sample_id": [ "GSM897569" ], "type": "protocol", "id": "GDS4474_1" }, { "dataset_id": "GDS4474", "description": "ET-770-DR", "sample_id": [ "GSM897571" ], "type": "protocol", "id": "GDS4474_2" }, { "dataset_id": "GDS4474", "description": "RM", "sample_id": [ "GSM897573" ], "type": "protocol", "id": "GDS4474_3" }, { "dataset_id": "GDS4474", "description": "ET-770 control", "sample_id": [ "GSM897568" ], "type": "protocol", "id": "GDS4474_4" }, { "dataset_id": "GDS4474", "description": "ET-770-DR control", "sample_id": [ "GSM897570" ], "type": "protocol", "id": "GDS4474_5" }, { "dataset_id": "GDS4474", "description": "RM control", "sample_id": [ "GSM897572" ], "type": "protocol", "id": "GDS4474_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4474", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4474.tab", "compression": "gz" } ], [ [ "GDS4475.tab" ], { "title": "Extracellular matrix protein cysteine rich 61 (CCN1) effect on LN229 glioma cells", "description": "Analysis of LN229 glioma cells with doxycycline-inducible expression of Cyr61 (CCN1), induced for 24h with doxycycline. CCN1 expression may reduce efficacy of oncolytic HSV-1 brain cancer therapy. Results provide insight into CCN1-mediated oncolytic HSV-1 inhibition.", "type": "Expression profiling by array", "pubmed_id": "22282654", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE29384", "order": "none", "update_date": "May 29 2013", "subsets": [ { "dataset_id": "GDS4475", "description": "Cyr61", "sample_id": [ "GSM726287", "GSM726288", "GSM726289" ], "type": "protocol", "id": "GDS4475_1" }, { "dataset_id": "GDS4475", "description": "uninduced", "sample_id": [ "GSM726290", "GSM726291", "GSM726292" ], "type": "protocol", "id": "GDS4475_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4475", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4475.tab", "compression": "gz" } ], [ [ "GDS4476.tab" ], { "title": "Parkin expression in parkin-deficient U87MG glioma cells", "description": "Analysis of U87MG glioma cells stably expressing parkin or vector alone. Parkin expression is dramatically reduced in glioma cells. Parkin mutations are a major cause of parkinsonism. Results provide insight into tumor suppressor function of parkin in brain tumors.", "type": "Expression profiling by array", "pubmed_id": "22431710", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE29494", "order": "none", "update_date": "May 29 2013", "subsets": [ { "dataset_id": "GDS4476", "description": "parkin expression", "sample_id": [ "GSM729745", "GSM729742", "GSM729739", "GSM729747", "GSM729744", "GSM729741", "GSM729746", "GSM729743", "GSM729740" ], "type": "protocol", "id": "GDS4476_1" }, { "dataset_id": "GDS4476", "description": "vector control", "sample_id": [ "GSM729733", "GSM729730", "GSM729727", "GSM729738", "GSM729737", "GSM729736", "GSM729735", "GSM729732", "GSM729729", "GSM729734", "GSM729731", "GSM729728" ], "type": "protocol", "id": "GDS4476_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4476", "version": 1.0, "instances": "21", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4476.tab", "compression": "gz" } ], [ [ "GDS4477.tab" ], { "title": "Pediatric glioblastoma brain tumors: histone H3.3 mutations", "description": "Analysis of pediatric glioblastoma (GBM) tumors with mutations in H3F3A gene. Mutation of key residues in histone H3.3 are specific to GBM and highly prevalent in children and young adults. Results indicate that defects in chromatin architecture underlie pediatric GBM pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22286061", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE34824", "order": "none", "update_date": "May 29 2013", "subsets": [ { "dataset_id": "GDS4477", "description": "H3F3A status: G34R", "sample_id": [ "GSM855942", "GSM855943", "GSM855944" ], "type": "genotype/variation", "id": "GDS4477_1" }, { "dataset_id": "GDS4477", "description": "H3F3A status: G34V", "sample_id": [ "GSM855945" ], "type": "genotype/variation", "id": "GDS4477_2" }, { "dataset_id": "GDS4477", "description": "H3F3A status: K27M", "sample_id": [ "GSM855947", "GSM855957", "GSM855966", "GSM855967", "GSM855968" ], "type": "genotype/variation", "id": "GDS4477_3" }, { "dataset_id": "GDS4477", "description": "H3F3A status: wild type", "sample_id": [ "GSM855946", "GSM855948", "GSM855949", "GSM855950", "GSM855951", "GSM855952", "GSM855953", "GSM855954", "GSM855955", "GSM855956", "GSM855958", "GSM855959", "GSM855960", "GSM855961", "GSM855962", "GSM855963", "GSM855964", "GSM855965" ], "type": "genotype/variation", "id": "GDS4477_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4477", "version": 1.0, "instances": "27", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4477.tab", "compression": "gz" } ], [ [ "GDS4478.tab" ], { "title": "MYC-driven medulloblastoma model", "description": "Analysis of Myc/DNp53-infected tumors derived from stem cells or progenitors, uninfected stem cells, and patched tumor cells. Cerebellar stem cells expressing Myc and mutant Trp53 generate tumors similar to MYC-driven medulloblastoma (MB). Results provide insight into transformation to MB tumor.", "type": "Expression profiling by array", "pubmed_id": "22340590", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE34126", "order": "none", "update_date": "May 29 2013", "subsets": [ { "dataset_id": "GDS4478", "description": "wild type", "sample_id": [ "GSM842157", "GSM842158", "GSM842159", "GSM842160", "GSM842161" ], "type": "genotype/variation", "id": "GDS4478_1" }, { "dataset_id": "GDS4478", "description": "tumor-bearing", "sample_id": [ "GSM842162", "GSM842163", "GSM842164", "GSM842165", "GSM842166", "GSM842171", "GSM842172", "GSM842173", "GSM842174", "GSM842175" ], "type": "genotype/variation", "id": "GDS4478_2" }, { "dataset_id": "GDS4478", "description": "Ptch1 mutant", "sample_id": [ "GSM842167", "GSM842168", "GSM842169", "GSM842170" ], "type": "genotype/variation", "id": "GDS4478_3" }, { "dataset_id": "GDS4478", "description": "FACS-sorted", "sample_id": [ "GSM842157", "GSM842158", "GSM842159", "GSM842160", "GSM842161" ], "type": "other", "id": "GDS4478_4" }, { "dataset_id": "GDS4478", "description": "stem cell-derived", "sample_id": [ "GSM842162", "GSM842163", "GSM842164", "GSM842165", "GSM842166" ], "type": "other", "id": "GDS4478_5" }, { "dataset_id": "GDS4478", "description": "patched tumors", "sample_id": [ "GSM842167", "GSM842168", "GSM842169", "GSM842170" ], "type": "other", "id": "GDS4478_6" }, { "dataset_id": "GDS4478", "description": "progenitor-derived", "sample_id": [ "GSM842171", "GSM842172", "GSM842173", "GSM842174", "GSM842175" ], "type": "other", "id": "GDS4478_7" }, { "dataset_id": "GDS4478", "description": "normal stem cells", "sample_id": [ "GSM842157", "GSM842158", "GSM842159", "GSM842160", "GSM842161" ], "type": "cell type", "id": "GDS4478_8" }, { "dataset_id": "GDS4478", "description": "Myc/DNp53 tumor", "sample_id": [ "GSM842162", "GSM842163", "GSM842164", "GSM842165", "GSM842166" ], "type": "cell type", "id": "GDS4478_9" }, { "dataset_id": "GDS4478", "description": "Ptch1 tumor", "sample_id": [ "GSM842167", "GSM842168", "GSM842169", "GSM842170" ], "type": "cell type", "id": "GDS4478_10" }, { "dataset_id": "GDS4478", "description": "Myc/DNp53 tumor", "sample_id": [ "GSM842171", "GSM842172", "GSM842173", "GSM842174", "GSM842175" ], "type": "cell type", "id": "GDS4478_11" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4478", "version": 1.0, "instances": "19", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4478.tab", "compression": "gz" } ], [ [ "GDS4481.tab" ], { "title": "Fetal liver hematopoietic stem cells heterozygous for CREB binding protein", "description": "Analysis of HSCs sorted fromCrebbp+/\u2212 day 14 fetal livers. Crebbp+/\u2212 mice inevitably develop myelodysplastic syndromes (MDS) and myeloproliferative neoplasms (MPN) within 9 to 12 months of age. Results provide insight into the molecular mechanisms underlying deregulation of HSC in MDS/MPN.", "type": "Expression profiling by array", "pubmed_id": "22198154", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE18061", "order": "none", "update_date": "Dec 11 2013", "subsets": [ { "dataset_id": "GDS4481", "description": "wild type", "sample_id": [ "GSM451590", "GSM451591", "GSM451592", "GSM451593" ], "type": "genotype/variation", "id": "GDS4481_1" }, { "dataset_id": "GDS4481", "description": "Crebbp+/-", "sample_id": [ "GSM451594", "GSM451595", "GSM451596", "GSM451597" ], "type": "genotype/variation", "id": "GDS4481_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4481", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4481.tab", "compression": "gz" } ], [ [ "GDS4482.tab" ], { "title": "Sonic Hedgehog inhibitor cyclopamine effect on co-culture of mesenchymal stem cells and umbilical vein endothelial cells", "description": "Analysis of a co-culture of 92% human mesenchymal stem cells (hMSC) and 8% human umbilical vein endothelial cells (huvEC) treated with the Sonic Hedgehog morphogen inhibitor cyclopamine. The co-culture of hMSC and huvEC supports the formation of a primitive three dimensional vascular network.", "type": "Expression profiling by array", "pubmed_id": "22388744", "platform": "GPL10526", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "17788", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE22293", "order": "none", "update_date": "Jun 29 2013", "subsets": [ { "dataset_id": "GDS4482", "description": "untreated control", "sample_id": [ "GSM554780", "GSM554781", "GSM554785" ], "type": "agent", "id": "GDS4482_1" }, { "dataset_id": "GDS4482", "description": "cyclopamine 5 \u03bcM", "sample_id": [ "GSM554782", "GSM554783", "GSM554784" ], "type": "agent", "id": "GDS4482_2" } ], "taxid": "9606", "genes": 17727, "aggregation_function": "mean", "name": "GDS4482", "version": 1.0, "instances": "6", "variables": 17729, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4482.tab", "compression": "gz" } ], [ [ "GDS4483.tab" ], { "title": "TGF-beta receptor type II knockdown effect on embryonic palatal tissue", "description": "Analysis of palatal tissues from E14.5 animals depleted for f TGF-beta receptor type II in cranial neural crest cells. Palatal fusion takes place at E14.5. Results provide insight into the role of TGF-beta signaling in palate development.", "type": "Expression profiling by array", "pubmed_id": "22123828", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE22989", "order": "none", "update_date": "Jun 29 2013", "subsets": [ { "dataset_id": "GDS4483", "description": "Tgfbr2fl/fl wild type", "sample_id": [ "GSM565084", "GSM565085", "GSM565086", "GSM565087", "GSM565088" ], "type": "genotype/variation", "id": "GDS4483_1" }, { "dataset_id": "GDS4483", "description": "Tgfbr2fl/fl;Wnt1-Cre conditional knockout", "sample_id": [ "GSM564967", "GSM564968", "GSM564969", "GSM564970", "GSM564971" ], "type": "genotype/variation", "id": "GDS4483_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4483", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4483.tab", "compression": "gz" } ], [ [ "GDS4484.tab" ], { "title": "Cerebellar neuronal cell response to thyroid hormone: time course", "description": "Analysis of cerebellar neuronal cells for up to 48 hours following treatment with thyroid hormone in vitro. Results provide insight into the role of thyroid hormone in the post-natal development of the cerebellum.", "type": "Expression profiling by array", "pubmed_id": "22586439", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE24793", "order": "none", "update_date": "Jun 29 2013", "subsets": [ { "dataset_id": "GDS4484", "description": "hour 6", "sample_id": [ "GSM610525", "GSM610524" ], "type": "time", "id": "GDS4484_1" }, { "dataset_id": "GDS4484", "description": "hour 16", "sample_id": [ "GSM610527", "GSM610526" ], "type": "time", "id": "GDS4484_2" }, { "dataset_id": "GDS4484", "description": "hour 24", "sample_id": [ "GSM610528", "GSM610529" ], "type": "time", "id": "GDS4484_3" }, { "dataset_id": "GDS4484", "description": "hour 48", "sample_id": [ "GSM610530", "GSM610531" ], "type": "time", "id": "GDS4484_4" }, { "dataset_id": "GDS4484", "description": "untreated control", "sample_id": [ "GSM610525", "GSM610531", "GSM610529", "GSM610527" ], "type": "agent", "id": "GDS4484_5" }, { "dataset_id": "GDS4484", "description": "thyroid hormone 10-7 M", "sample_id": [ "GSM610524", "GSM610530", "GSM610528", "GSM610526" ], "type": "agent", "id": "GDS4484_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4484", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4484.tab", "compression": "gz" } ], [ [ "GDS4485.tab" ], { "title": "MYBL1 transcription factor knockout effect on testes", "description": "Analysis of testis from 14 and 17 day old Mybl1 repro9/repro9 mutants. Mybl1 is highly transcribed in spermatocytes after meiotic entry. Repro9 mutants exhibit male infertility due to arrest of meiosis pachytene stage. Results provide insight in the role of MYBL1 in the regulation of male meiosis.", "type": "Expression profiling by array", "pubmed_id": "21750041", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE28025", "order": "none", "update_date": "Jun 29 2013", "subsets": [ { "dataset_id": "GDS4485", "description": "wild type", "sample_id": [ "GSM692969", "GSM692970", "GSM692971", "GSM692977", "GSM692978", "GSM692979", "GSM692980", "GSM692981" ], "type": "genotype/variation", "id": "GDS4485_1" }, { "dataset_id": "GDS4485", "description": "repro9/repro9 mutant", "sample_id": [ "GSM692964", "GSM692965", "GSM692966", "GSM692967", "GSM692968", "GSM692972", "GSM692973", "GSM692974", "GSM692975", "GSM692976" ], "type": "genotype/variation", "id": "GDS4485_2" }, { "dataset_id": "GDS4485", "description": "14 days postpartum", "sample_id": [ "GSM692969", "GSM692970", "GSM692971", "GSM692964", "GSM692965", "GSM692966", "GSM692967", "GSM692968" ], "type": "age", "id": "GDS4485_3" }, { "dataset_id": "GDS4485", "description": "17 days postpartum", "sample_id": [ "GSM692977", "GSM692978", "GSM692979", "GSM692980", "GSM692981", "GSM692972", "GSM692973", "GSM692974", "GSM692975", "GSM692976" ], "type": "age", "id": "GDS4485_4" }, { "dataset_id": "GDS4485", "description": "early/midpachytene spermatocytes", "sample_id": [ "GSM692969", "GSM692970", "GSM692971", "GSM692964", "GSM692965", "GSM692966", "GSM692967", "GSM692968" ], "type": "cell type", "id": "GDS4485_5" }, { "dataset_id": "GDS4485", "description": "latepachytene/diplotene spermatocytes", "sample_id": [ "GSM692977", "GSM692978", "GSM692979", "GSM692980", "GSM692981", "GSM692972", "GSM692973", "GSM692974", "GSM692975", "GSM692976" ], "type": "cell type", "id": "GDS4485_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4485", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4485.tab", "compression": "gz" } ], [ [ "GDS4486.tab" ], { "title": "Heterozygous null CREB binding protein mutant response to environmental enrichment: hippocampus", "description": "Analysis of hippocampi of heterozygous CREB-binding protein null (CBP) mutants following environmental enrichment (EE). EE was reported to be beneficial for a number of cognitive disorders. Results provide insight into the role of CBP in EE-induced neurogenesis and cognitive enhancement.", "type": "Expression profiling by array", "pubmed_id": "21847097", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE30880", "order": "none", "update_date": "Jun 30 2013", "subsets": [ { "dataset_id": "GDS4486", "description": "Env Enrichment", "sample_id": [ "GSM766006", "GSM766007", "GSM766008", "GSM766014", "GSM766015", "GSM766016" ], "type": "protocol", "id": "GDS4486_1" }, { "dataset_id": "GDS4486", "description": "standard cage", "sample_id": [ "GSM766001", "GSM766002", "GSM766003", "GSM766004", "GSM766005", "GSM766009", "GSM766010", "GSM766011", "GSM766012", "GSM766013" ], "type": "protocol", "id": "GDS4486_2" }, { "dataset_id": "GDS4486", "description": "wild type", "sample_id": [ "GSM766001", "GSM766002", "GSM766003", "GSM766004", "GSM766005", "GSM766006", "GSM766007", "GSM766008" ], "type": "genotype/variation", "id": "GDS4486_3" }, { "dataset_id": "GDS4486", "description": "cbp+/- mutant", "sample_id": [ "GSM766009", "GSM766010", "GSM766011", "GSM766012", "GSM766013", "GSM766014", "GSM766015", "GSM766016" ], "type": "genotype/variation", "id": "GDS4486_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4486", "version": 1.0, "instances": "16", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4486.tab", "compression": "gz" } ], [ [ "GDS4487.tab" ], { "title": "Ras/MEK inhibition effect on IFN-alpha treated cancer cell line: time course", "description": "Analysis of HT1080 cells treated with IFN-alpha, the Ras/MEK inhibitor U0126, or both for 6 or 12 hours. SKOV3 cells treated with IFN-alpha for 6 hours examined. HT1080 is moderately resistant to the anti-viral effects of IFN-alpha. MEK inhibition increases the sensitivity of HT1080 to IFN-alpha.", "type": "Expression profiling by array", "pubmed_id": "22970192", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE31019", "order": "none", "update_date": "Jun 30 2013", "subsets": [ { "dataset_id": "GDS4487", "description": "DMSO control", "sample_id": [ "GSM768611", "GSM768612", "GSM768613", "GSM768614", "GSM768615", "GSM768616", "GSM768635", "GSM768636", "GSM768637" ], "type": "agent", "id": "GDS4487_1" }, { "dataset_id": "GDS4487", "description": "interferon-\u03b1 (500U/ml)", "sample_id": [ "GSM768617", "GSM768618", "GSM768619", "GSM768620", "GSM768621", "GSM768622", "GSM768638", "GSM768639", "GSM768640" ], "type": "agent", "id": "GDS4487_2" }, { "dataset_id": "GDS4487", "description": "MEK inhib U0126 (20uM)", "sample_id": [ "GSM768623", "GSM768624", "GSM768625", "GSM768626", "GSM768627", "GSM768628" ], "type": "agent", "id": "GDS4487_3" }, { "dataset_id": "GDS4487", "description": "IFN\u03b1 (500U/ml ) + MEK inhib U0126 (20uM)", "sample_id": [ "GSM768629", "GSM768630", "GSM768631", "GSM768632", "GSM768633", "GSM768634" ], "type": "agent", "id": "GDS4487_4" }, { "dataset_id": "GDS4487", "description": "hour 6", "sample_id": [ "GSM768637", "GSM768636", "GSM768635", "GSM768640", "GSM768639", "GSM768638", "GSM768613", "GSM768612", "GSM768611", "GSM768625", "GSM768624", "GSM768623", "GSM768619", "GSM768618", "GSM768617", "GSM768631", "GSM768630", "GSM768629" ], "type": "time", "id": "GDS4487_5" }, { "dataset_id": "GDS4487", "description": "hour 12", "sample_id": [ "GSM768616", "GSM768615", "GSM768614", "GSM768628", "GSM768627", "GSM768626", "GSM768622", "GSM768621", "GSM768620", "GSM768634", "GSM768633", "GSM768632" ], "type": "time", "id": "GDS4487_6" }, { "dataset_id": "GDS4487", "description": "HT1080 fibrosarcoma", "sample_id": [ "GSM768611", "GSM768612", "GSM768613", "GSM768614", "GSM768615", "GSM768616", "GSM768617", "GSM768618", "GSM768619", "GSM768620", "GSM768621", "GSM768622", "GSM768623", "GSM768624", "GSM768625", "GSM768626", "GSM768627", "GSM768628", "GSM768629", "GSM768630", "GSM768631", "GSM768632", "GSM768633", "GSM768634" ], "type": "cell line", "id": "GDS4487_7" }, { "dataset_id": "GDS4487", "description": "SKOV3 ovarian adenocarcinoma", "sample_id": [ "GSM768635", "GSM768636", "GSM768637", "GSM768638", "GSM768639", "GSM768640" ], "type": "cell line", "id": "GDS4487_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4487", "version": 1.0, "instances": "30", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4487.tab", "compression": "gz" } ], [ [ "GDS4488.tab" ], { "title": "Notch1 signaling inhibition effect on aortic valve interstitial cells", "description": "Analysis of aortic valve interstitial cells treated with the Notch1 signaling inhibitor DAPT. NOTCH1 mutations are associated with aortic valve malformations and adult-onset calcification. Results provide insight into the role of Notch in the pathogenesis of calcific aortic valve disease.", "type": "Expression profiling by array", "pubmed_id": "22110751", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE31668", "order": "none", "update_date": "Jun 30 2013", "subsets": [ { "dataset_id": "GDS4488", "description": "Notch inhibitor DAPT (10 \u03bcM.)", "sample_id": [ "GSM786182", "GSM786183", "GSM786184" ], "type": "agent", "id": "GDS4488_1" }, { "dataset_id": "GDS4488", "description": "DMSO control", "sample_id": [ "GSM786185", "GSM786186", "GSM786187" ], "type": "agent", "id": "GDS4488_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4488", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4488.tab", "compression": "gz" } ], [ [ "GDS4489.tab" ], { "title": "Turner syndrome amniocyte derived-induced pluripotent stem cells", "description": "Analysis of induced pluripotent stem cells (iPSCs) derived from monosomy X (Turner syndrome (TS)) amniocytes. TS derived-iPSCs facilitate modeling of aneuploidy-related abnormal early development. Results provide insight into the molecular mechanisms underlying aneuploid syndromes.", "type": "Expression profiling by array", "pubmed_id": "21949351", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE32527", "order": "none", "update_date": "Jan 02 2014", "subsets": [ { "dataset_id": "GDS4489", "description": "somatic amniocytes", "sample_id": [ "GSM807097" ], "type": "cell type", "id": "GDS4489_1" }, { "dataset_id": "GDS4489", "description": "iPSC from amniocyte", "sample_id": [ "GSM807102", "GSM807103", "GSM807104" ], "type": "cell type", "id": "GDS4489_2" }, { "dataset_id": "GDS4489", "description": "iPSC from chorionic mesenchymal cell", "sample_id": [ "GSM807105", "GSM807106" ], "type": "cell type", "id": "GDS4489_3" }, { "dataset_id": "GDS4489", "description": "iPSC from periosteum membrane cell", "sample_id": [ "GSM807100", "GSM807101" ], "type": "cell type", "id": "GDS4489_4" }, { "dataset_id": "GDS4489", "description": "somatic fibroblast", "sample_id": [ "GSM807098", "GSM807099" ], "type": "cell type", "id": "GDS4489_5" }, { "dataset_id": "GDS4489", "description": "Turner syndrome", "sample_id": [ "GSM807097", "GSM807102", "GSM807103", "GSM807104" ], "type": "disease state", "id": "GDS4489_6" }, { "dataset_id": "GDS4489", "description": "Crigler-Najjar syndrome", "sample_id": [ "GSM807098" ], "type": "disease state", "id": "GDS4489_7" }, { "dataset_id": "GDS4489", "description": "Ornithine transcarbamylase deficiency", "sample_id": [ "GSM807099" ], "type": "disease state", "id": "GDS4489_8" }, { "dataset_id": "GDS4489", "description": "normal control", "sample_id": [ "GSM807100", "GSM807101", "GSM807105", "GSM807106" ], "type": "disease state", "id": "GDS4489_9" }, { "dataset_id": "GDS4489", "description": "TS1 amniocyte", "sample_id": [ "GSM807097" ], "type": "cell line", "id": "GDS4489_10" }, { "dataset_id": "GDS4489", "description": "Peri-iPS-C1P20", "sample_id": [ "GSM807100" ], "type": "cell line", "id": "GDS4489_11" }, { "dataset_id": "GDS4489", "description": "Peri-iPS-C2P20", "sample_id": [ "GSM807101" ], "type": "cell line", "id": "GDS4489_12" }, { "dataset_id": "GDS4489", "description": "TS1-iPS-C1P22", "sample_id": [ "GSM807102" ], "type": "cell line", "id": "GDS4489_13" }, { "dataset_id": "GDS4489", "description": "Fib-1", "sample_id": [ "GSM807098" ], "type": "cell line", "id": "GDS4489_14" }, { "dataset_id": "GDS4489", "description": "Fib-3", "sample_id": [ "GSM807099" ], "type": "cell line", "id": "GDS4489_15" }, { "dataset_id": "GDS4489", "description": "CMC-iPS-C1P20", "sample_id": [ "GSM807105" ], "type": "cell line", "id": "GDS4489_16" }, { "dataset_id": "GDS4489", "description": "CMC-iPS-C28P20", "sample_id": [ "GSM807106" ], "type": "cell line", "id": "GDS4489_17" }, { "dataset_id": "GDS4489", "description": "TS1-iPS-C3P24", "sample_id": [ "GSM807103" ], "type": "cell line", "id": "GDS4489_18" }, { "dataset_id": "GDS4489", "description": "TS1-iPS-C5P20", "sample_id": [ "GSM807104" ], "type": "cell line", "id": "GDS4489_19" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4489", "version": 1.0, "instances": "10", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4489.tab", "compression": "gz" } ], [ [ "GDS449.tab" ], { "title": "Cell cycle and Tat transactivation", "description": "Analysis of effect of Tat transactivation during cell cycle. HeLa CD4+ cells transfected with epitope-tagged Tat plasmid or parental vector pCEP4. Cells synchronized with cell cycle blocker hydroxyurea or nocodazole and sampled at 0, 3, 6 and 9 hours.", "type": "Expression profiling by array", "pubmed_id": "15780141", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE6431", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS449", "description": "etat/PCEP4 HeLa", "sample_id": [ "GSM8692", "GSM8693", "GSM8694", "GSM8695", "GSM8696", "GSM8697", "GSM8698", "GSM8699", "GSM8700", "GSM8701", "GSM8702", "GSM8703", "GSM8704", "GSM8705", "GSM8706", "GSM8707", "GSM8708", "GSM8709" ], "type": "cell line", "id": "GDS449_1" }, { "dataset_id": "GDS449", "description": "pCep4 HeLa control", "sample_id": [ "GSM8710", "GSM8711", "GSM8712", "GSM8713", "GSM8714", "GSM8715", "GSM8716", "GSM8717", "GSM8718", "GSM8719", "GSM8720", "GSM8721", "GSM8722", "GSM8723", "GSM8724", "GSM8725", "GSM8726", "GSM8727" ], "type": "cell line", "id": "GDS449_2" }, { "dataset_id": "GDS449", "description": "control - unsychronized", "sample_id": [ "GSM8692", "GSM8693", "GSM8710", "GSM8711" ], "type": "agent", "id": "GDS449_3" }, { "dataset_id": "GDS449", "description": "hydroxyurea", "sample_id": [ "GSM8694", "GSM8695", "GSM8696", "GSM8697", "GSM8698", "GSM8699", "GSM8700", "GSM8701", "GSM8712", "GSM8713", "GSM8714", "GSM8715", "GSM8716", "GSM8717", "GSM8718", "GSM8719" ], "type": "agent", "id": "GDS449_4" }, { "dataset_id": "GDS449", "description": "nocodazole", "sample_id": [ "GSM8702", "GSM8703", "GSM8704", "GSM8705", "GSM8706", "GSM8707", "GSM8708", "GSM8709", "GSM8720", "GSM8721", "GSM8722", "GSM8723", "GSM8724", "GSM8725", "GSM8726", "GSM8727" ], "type": "agent", "id": "GDS449_5" }, { "dataset_id": "GDS449", "description": "control - unsychronized", "sample_id": [ "GSM8692", "GSM8693", "GSM8710", "GSM8711" ], "type": "time", "id": "GDS449_6" }, { "dataset_id": "GDS449", "description": "0 hour", "sample_id": [ "GSM8694", "GSM8695", "GSM8712", "GSM8713", "GSM8702", "GSM8703", "GSM8720", "GSM8721" ], "type": "time", "id": "GDS449_7" }, { "dataset_id": "GDS449", "description": "3 hour", "sample_id": [ "GSM8696", "GSM8697", "GSM8714", "GSM8715", "GSM8704", "GSM8705", "GSM8722", "GSM8723" ], "type": "time", "id": "GDS449_8" }, { "dataset_id": "GDS449", "description": "6 hour", "sample_id": [ "GSM8698", "GSM8699", "GSM8716", "GSM8717", "GSM8706", "GSM8707", "GSM8724", "GSM8725" ], "type": "time", "id": "GDS449_9" }, { "dataset_id": "GDS449", "description": "9 hour", "sample_id": [ "GSM8700", "GSM8701", "GSM8718", "GSM8719", "GSM8708", "GSM8709", "GSM8726", "GSM8727" ], "type": "time", "id": "GDS449_10" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS449", "version": 1.0, "instances": "36", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS449.tab", "compression": "gz" } ], [ [ "GDS4490.tab" ], { "title": "Lmna G609G knock-in model of Hutchinson-Gilford Progeria Syndrome: liver", "description": "Analysis of liver from Lmna Gly609Gly knock-in C57BL/6 females. These mice accumulate progerin and manifest the main clinical features of human Hutchinson-Gilford progeria syndrome (HGPS). Results provide insight into the molecular mechanisms underlying HGPS.", "type": "Expression profiling by array", "pubmed_id": "22030750", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE32609", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4490", "description": "LmnaG609G/G609G knock-in", "sample_id": [ "GSM808403", "GSM808404", "GSM808405" ], "type": "genotype/variation", "id": "GDS4490_1" }, { "dataset_id": "GDS4490", "description": "wild type", "sample_id": [ "GSM808406", "GSM808407", "GSM808408" ], "type": "genotype/variation", "id": "GDS4490_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4490", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4490.tab", "compression": "gz" } ], [ [ "GDS4491.tab" ], { "title": "Nonlesional atopic dermatitis skin", "description": "Analysis of paired samples of nonlesional atopic dermatitis (ANL) and lesional atopic dermatitis (AL) skin lesions compared with normal skin. ANL skin is characterized by terminal differentiation defects. Results provide insight into molecular mechanisms that characterize ANL skin.", "type": "Expression profiling by array", "pubmed_id": "21388663", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE32924", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4491", "description": "Atopic dermatitis: Lesional", "sample_id": [ "GSM815427", "GSM815429", "GSM815431", "GSM815433", "GSM815435", "GSM815437", "GSM815438", "GSM815440", "GSM815442", "GSM815444", "GSM815446", "GSM815448", "GSM815450" ], "type": "disease state", "id": "GDS4491_1" }, { "dataset_id": "GDS4491", "description": "Atopic dermatitis: Nonlesional", "sample_id": [ "GSM815426", "GSM815428", "GSM815430", "GSM815432", "GSM815434", "GSM815436", "GSM815439", "GSM815441", "GSM815443", "GSM815445", "GSM815447", "GSM815449" ], "type": "disease state", "id": "GDS4491_2" }, { "dataset_id": "GDS4491", "description": "normal", "sample_id": [ "GSM815451", "GSM815452", "GSM815453", "GSM815454", "GSM815455", "GSM815456", "GSM815457", "GSM815458" ], "type": "disease state", "id": "GDS4491_3" }, { "dataset_id": "GDS4491", "description": "SCORAD: 37", "sample_id": [ "GSM815427" ], "type": "other", "id": "GDS4491_4" }, { "dataset_id": "GDS4491", "description": "SCORAD: 51", "sample_id": [ "GSM815429" ], "type": "other", "id": "GDS4491_5" }, { "dataset_id": "GDS4491", "description": "SCORAD: 36", "sample_id": [ "GSM815431" ], "type": "other", "id": "GDS4491_6" }, { "dataset_id": "GDS4491", "description": "SCORAD: 33", "sample_id": [ "GSM815433" ], "type": "other", "id": "GDS4491_7" }, { "dataset_id": "GDS4491", "description": "SCORAD: 57", "sample_id": [ "GSM815435" ], "type": "other", "id": "GDS4491_8" }, { "dataset_id": "GDS4491", "description": "SCORAD: 56", "sample_id": [ "GSM815437" ], "type": "other", "id": "GDS4491_9" }, { "dataset_id": "GDS4491", "description": "SCORAD: 55", "sample_id": [ "GSM815438" ], "type": "other", "id": "GDS4491_10" }, { "dataset_id": "GDS4491", "description": "SCORAD: 28", "sample_id": [ "GSM815440" ], "type": "other", "id": "GDS4491_11" }, { "dataset_id": "GDS4491", "description": "SCORAD: 64", "sample_id": [ "GSM815442" ], "type": "other", "id": "GDS4491_12" }, { "dataset_id": "GDS4491", "description": "SCORAD: 70", "sample_id": [ "GSM815444" ], "type": "other", "id": "GDS4491_13" }, { "dataset_id": "GDS4491", "description": "SCORAD: 91.1", "sample_id": [ "GSM815446" ], "type": "other", "id": "GDS4491_14" }, { "dataset_id": "GDS4491", "description": "SCORAD: 81", "sample_id": [ "GSM815448" ], "type": "other", "id": "GDS4491_15" }, { "dataset_id": "GDS4491", "description": "SCORAD: 97.5", "sample_id": [ "GSM815450" ], "type": "other", "id": "GDS4491_16" }, { "dataset_id": "GDS4491", "description": "SCORAD: 0", "sample_id": [ "GSM815426", "GSM815428", "GSM815430", "GSM815432", "GSM815434", "GSM815436", "GSM815439", "GSM815441", "GSM815443", "GSM815445", "GSM815447", "GSM815449", "GSM815451", "GSM815452", "GSM815453", "GSM815454", "GSM815455", "GSM815456", "GSM815457", "GSM815458" ], "type": "other", "id": "GDS4491_17" }, { "dataset_id": "GDS4491", "description": "P10", "sample_id": [ "GSM815426", "GSM815427" ], "type": "individual", "id": "GDS4491_18" }, { "dataset_id": "GDS4491", "description": "P13", "sample_id": [ "GSM815428", "GSM815429" ], "type": "individual", "id": "GDS4491_19" }, { "dataset_id": "GDS4491", "description": "P1", "sample_id": [ "GSM815430", "GSM815431" ], "type": "individual", "id": "GDS4491_20" }, { "dataset_id": "GDS4491", "description": "P14", "sample_id": [ "GSM815432", "GSM815433" ], "type": "individual", "id": "GDS4491_21" }, { "dataset_id": "GDS4491", "description": "P5", "sample_id": [ "GSM815434", "GSM815435" ], "type": "individual", "id": "GDS4491_22" }, { "dataset_id": "GDS4491", "description": "P7", "sample_id": [ "GSM815436", "GSM815437" ], "type": "individual", "id": "GDS4491_23" }, { "dataset_id": "GDS4491", "description": "P9", "sample_id": [ "GSM815438" ], "type": "individual", "id": "GDS4491_24" }, { "dataset_id": "GDS4491", "description": "P2", "sample_id": [ "GSM815439", "GSM815440" ], "type": "individual", "id": "GDS4491_25" }, { "dataset_id": "GDS4491", "description": "P8", "sample_id": [ "GSM815441" ], "type": "individual", "id": "GDS4491_26" }, { "dataset_id": "GDS4491", "description": "P11", "sample_id": [ "GSM815442" ], "type": "individual", "id": "GDS4491_27" }, { "dataset_id": "GDS4491", "description": "P6", "sample_id": [ "GSM815443", "GSM815444" ], "type": "individual", "id": "GDS4491_28" }, { "dataset_id": "GDS4491", "description": "P12", "sample_id": [ "GSM815445", "GSM815446" ], "type": "individual", "id": "GDS4491_29" }, { "dataset_id": "GDS4491", "description": "P3", "sample_id": [ "GSM815447", "GSM815448" ], "type": "individual", "id": "GDS4491_30" }, { "dataset_id": "GDS4491", "description": "P4", "sample_id": [ "GSM815449", "GSM815450" ], "type": "individual", "id": "GDS4491_31" }, { "dataset_id": "GDS4491", "description": "N1", "sample_id": [ "GSM815451" ], "type": "individual", "id": "GDS4491_32" }, { "dataset_id": "GDS4491", "description": "N2", "sample_id": [ "GSM815452" ], "type": "individual", "id": "GDS4491_33" }, { "dataset_id": "GDS4491", "description": "N3", "sample_id": [ "GSM815453" ], "type": "individual", "id": "GDS4491_34" }, { "dataset_id": "GDS4491", "description": "N4", "sample_id": [ "GSM815454" ], "type": "individual", "id": "GDS4491_35" }, { "dataset_id": "GDS4491", "description": "N5", "sample_id": [ "GSM815455" ], "type": "individual", "id": "GDS4491_36" }, { "dataset_id": "GDS4491", "description": "N6", "sample_id": [ "GSM815456" ], "type": "individual", "id": "GDS4491_37" }, { "dataset_id": "GDS4491", "description": "N7", "sample_id": [ "GSM815457" ], "type": "individual", "id": "GDS4491_38" }, { "dataset_id": "GDS4491", "description": "N8", "sample_id": [ "GSM815458" ], "type": "individual", "id": "GDS4491_39" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4491", "version": 1.0, "instances": "33", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4491.tab", "compression": "gz" } ], [ [ "GDS4492.tab" ], { "title": "FHH.Pkhd1 model of autosomal recessive polycystic kidney disease", "description": "Analysis of kidneys from 30 day-old males representing SD, FHH, PCK, and FHH.Pkhd1 strains. The FHH.Pkhd1 strain carries the PCK Pkhd1 mutation but is resistant to the development of ARPKD. Results provide insight into the molecular mechanisms that modulate ARPKD disease progression and severity.", "type": "Expression profiling by array", "pubmed_id": "22669842", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE33056", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4492", "description": "PCK", "sample_id": [ "GSM818876", "GSM818877", "GSM818878" ], "type": "strain", "id": "GDS4492_1" }, { "dataset_id": "GDS4492", "description": "SD", "sample_id": [ "GSM818879", "GSM818880", "GSM818881" ], "type": "strain", "id": "GDS4492_2" }, { "dataset_id": "GDS4492", "description": "FHH", "sample_id": [ "GSM818882", "GSM818883", "GSM818884" ], "type": "strain", "id": "GDS4492_3" }, { "dataset_id": "GDS4492", "description": "FHH.Pkhd1", "sample_id": [ "GSM818885", "GSM818886", "GSM818887" ], "type": "strain", "id": "GDS4492_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4492", "version": 1.0, "instances": "12", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4492.tab", "compression": "gz" } ], [ [ "GDS4493.tab" ], { "title": "Transcription factor Trps1 GATA-domain deletion effect on embryonic whisker pads", "description": "Analysis of whisker pads from E12.5 embryos in which the GATA domain of Trps1 has been deleted. Trps1\u2206gt/\u2206gt mutants have fewer pelage follicles and lack vibrissae follicles postnatally. Results provide insight into molecular mechanisms underlying vibrissa follicle morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "22115758", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE33766", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4493", "description": "wild type", "sample_id": [ "GSM835207", "GSM835208", "GSM835209" ], "type": "genotype/variation", "id": "GDS4493_1" }, { "dataset_id": "GDS4493", "description": "Trps1\u2206gt/\u2206gt mutant", "sample_id": [ "GSM835210", "GSM835211", "GSM835212" ], "type": "genotype/variation", "id": "GDS4493_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4493", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4493.tab", "compression": "gz" } ], [ [ "GDS4494.tab" ], { "title": "Segmental monosomy", "description": "Analysis of adult females representing segmental deficiencies (Df), both as single Df/+ genotypes and in pairwise Df combinations. Aneuploidies such as segmental monosomy are associated with developmental abnormalities. Results provide insight into the effects of aneuploidies on the transcriptome.", "type": "Expression profiling by array", "pubmed_id": "22434883", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE34400", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4494", "description": "wild type", "sample_id": [ "GSM848319", "GSM848320", "GSM848321", "GSM848322", "GSM848323", "GSM848324" ], "type": "genotype/variation", "id": "GDS4494_1" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED10953/+", "sample_id": [ "GSM848325", "GSM848331", "GSM848359" ], "type": "genotype/variation", "id": "GDS4494_2" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED4559/+", "sample_id": [ "GSM848326", "GSM848334", "GSM848358" ], "type": "genotype/variation", "id": "GDS4494_3" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1770/+", "sample_id": [ "GSM848327", "GSM848338", "GSM848360" ], "type": "genotype/variation", "id": "GDS4494_4" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1612/+", "sample_id": [ "GSM848328", "GSM848339", "GSM848361" ], "type": "genotype/variation", "id": "GDS4494_5" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED3/+", "sample_id": [ "GSM848329", "GSM848340", "GSM848362" ], "type": "genotype/variation", "id": "GDS4494_6" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/+", "sample_id": [ "GSM848344", "GSM848351" ], "type": "genotype/variation", "id": "GDS4494_7" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/+", "sample_id": [ "GSM848345", "GSM848357" ], "type": "genotype/variation", "id": "GDS4494_8" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED3/+_Df(3R)ED10953/+", "sample_id": [ "GSM848333" ], "type": "genotype/variation", "id": "GDS4494_9" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED4559/+_Df(2R)ED1770/+", "sample_id": [ "GSM848335" ], "type": "genotype/variation", "id": "GDS4494_10" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED4559/+_Df(2R)ED1612/+", "sample_id": [ "GSM848336" ], "type": "genotype/variation", "id": "GDS4494_11" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED4559/+_Df(3R)ED10953/+", "sample_id": [ "GSM848330" ], "type": "genotype/variation", "id": "GDS4494_12" }, { "dataset_id": "GDS4494", "description": "Df(2L)ED4559/Df(2L)ED3", "sample_id": [ "GSM848337" ], "type": "genotype/variation", "id": "GDS4494_13" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1612/+_Df(2L)ED3/+", "sample_id": [ "GSM848343" ], "type": "genotype/variation", "id": "GDS4494_14" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1612/+_Df(3R)ED10953/+", "sample_id": [ "GSM848332" ], "type": "genotype/variation", "id": "GDS4494_15" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1770/+_Df(2L)ED3/+", "sample_id": [ "GSM848342" ], "type": "genotype/variation", "id": "GDS4494_16" }, { "dataset_id": "GDS4494", "description": "Df(2R)ED1770/Df(2R)ED1612", "sample_id": [ "GSM848341" ], "type": "genotype/variation", "id": "GDS4494_17" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/+_Df(2L)ED3/+", "sample_id": [ "GSM848350" ], "type": "genotype/variation", "id": "GDS4494_18" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/+_Df(2L)ED4559/+", "sample_id": [ "GSM848346" ], "type": "genotype/variation", "id": "GDS4494_19" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/+_Df(2R)ED1612/+", "sample_id": [ "GSM848349" ], "type": "genotype/variation", "id": "GDS4494_20" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/+_Df(2R)ED1770/+", "sample_id": [ "GSM848348" ], "type": "genotype/variation", "id": "GDS4494_21" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED5071/Df(3R)ED10953", "sample_id": [ "GSM848347" ], "type": "genotype/variation", "id": "GDS4494_22" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/+_Df(2L)ED3/+", "sample_id": [ "GSM848356" ], "type": "genotype/variation", "id": "GDS4494_23" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/+_Df(2L)ED4559/+", "sample_id": [ "GSM848352" ], "type": "genotype/variation", "id": "GDS4494_24" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/+_Df(2R)ED1612/+", "sample_id": [ "GSM848355" ], "type": "genotype/variation", "id": "GDS4494_25" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/+_Df(2R)ED1770/+", "sample_id": [ "GSM848354" ], "type": "genotype/variation", "id": "GDS4494_26" }, { "dataset_id": "GDS4494", "description": "Df(3R)ED7665/Df(3R)ED10953", "sample_id": [ "GSM848353" ], "type": "genotype/variation", "id": "GDS4494_27" }, { "dataset_id": "GDS4494", "description": "total length deleted: 70.9 kb", "sample_id": [ "GSM848325", "GSM848331", "GSM848359" ], "type": "other", "id": "GDS4494_28" }, { "dataset_id": "GDS4494", "description": "total length deleted: 479.1 kb", "sample_id": [ "GSM848326", "GSM848334", "GSM848358" ], "type": "other", "id": "GDS4494_29" }, { "dataset_id": "GDS4494", "description": "total length deleted: 551.9 kb", "sample_id": [ "GSM848327", "GSM848338", "GSM848360" ], "type": "other", "id": "GDS4494_30" }, { "dataset_id": "GDS4494", "description": "total length deleted: 829.1 kb", "sample_id": [ "GSM848328", "GSM848339", "GSM848361" ], "type": "other", "id": "GDS4494_31" }, { "dataset_id": "GDS4494", "description": "total length deleted: 843.2 kb", "sample_id": [ "GSM848329", "GSM848340", "GSM848362" ], "type": "other", "id": "GDS4494_32" }, { "dataset_id": "GDS4494", "description": "total length deleted: 755.4 kb", "sample_id": [ "GSM848344", "GSM848351" ], "type": "other", "id": "GDS4494_33" }, { "dataset_id": "GDS4494", "description": "total length deleted: 1003.6 kb", "sample_id": [ "GSM848345", "GSM848357" ], "type": "other", "id": "GDS4494_34" }, { "dataset_id": "GDS4494", "description": "total length deleted: n/a", "sample_id": [ "GSM848319", "GSM848320", "GSM848321", "GSM848322", "GSM848323", "GSM848324", "GSM848330", "GSM848332", "GSM848333", "GSM848335", "GSM848336", "GSM848337", "GSM848341", "GSM848342", "GSM848343", "GSM848346", "GSM848347", "GSM848348", "GSM848349", "GSM848350", "GSM848352", "GSM848353", "GSM848354", "GSM848355", "GSM848356" ], "type": "other", "id": "GDS4494_35" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS4494", "version": 1.0, "instances": "44", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4494.tab", "compression": "gz" } ], [ [ "GDS4495.tab" ], { "title": "SmoA1 and SmoA2 models of medulloblastoma: postnatal day 5 brain", "description": "Analysis of cerebella from Smoothened (Smo)A1 and SmoA2 mutants. The SmoA1 and SmoA2 mutations both cause medulloblastoma but have markedly different effects on cerebellar development. Results provide insight into the molecular basis of the oncogenic and developmental effects of the Smo variants.", "type": "Expression profiling by array", "pubmed_id": "22869526", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE34593", "order": "none", "update_date": "Dec 04 2013", "subsets": [ { "dataset_id": "GDS4495", "description": "wild type", "sample_id": [ "GSM840088", "GSM840089", "GSM840090" ], "type": "genotype/variation", "id": "GDS4495_1" }, { "dataset_id": "GDS4495", "description": "SmoA2 mutant", "sample_id": [ "GSM840091", "GSM840092", "GSM840093" ], "type": "genotype/variation", "id": "GDS4495_2" }, { "dataset_id": "GDS4495", "description": "SmoA1 (Smo/Smo) mutant", "sample_id": [ "GSM840094", "GSM840095", "GSM840096" ], "type": "genotype/variation", "id": "GDS4495_3" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS4495", "version": 1.0, "instances": "9", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4495.tab", "compression": "gz" } ], [ [ "GDS4496.tab" ], { "title": "Wing disc response to Epidermal Growth Factor Receptor signaling perturbations", "description": "Analysis of third instar wing disc from EGFR dominant negative (71B-Gal4; UAS EgfrDN) and EGFR activated (71B-GAL4; UAS EgfrACT) larvae. Aberrant signaling of highly conserved EGFR pathway is implicated in a number of diseases. Results provide insight into the identity of new EGFR-responsive genes.", "type": "Expression profiling by array", "pubmed_id": "22595244", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34872", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4496", "description": "EGFR dominant negative transgene", "sample_id": [ "GSM856792", "GSM856793", "GSM856794" ], "type": "genotype/variation", "id": "GDS4496_1" }, { "dataset_id": "GDS4496", "description": "EGFR activated transgene", "sample_id": [ "GSM856795", "GSM856796", "GSM856797" ], "type": "genotype/variation", "id": "GDS4496_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS4496", "version": 1.0, "instances": "6", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4496.tab", "compression": "gz" } ], [ [ "GDS4497.tab" ], { "title": "Acute myeloid leukemia cell lines with high Ecotropic Viral Integration site 1 expression", "description": "Analysis of acute myeloid leukemia (AML) cell lines with high or low Ecotropic viral integration site 1 (EVI1) expression. High EVI1 levels predict adverse outcome in chemotherapy-resistant AML patients. Results provide insight into novel molecular targets in AML with high EVI1 expression.", "type": "Expression profiling by array", "pubmed_id": "21394097", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE35159", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4497", "description": "EVI1 high", "sample_id": [ "GSM862831", "GSM862832", "GSM862833", "GSM862834" ], "type": "genotype/variation", "id": "GDS4497_1" }, { "dataset_id": "GDS4497", "description": "EVI1 low", "sample_id": [ "GSM862823", "GSM862824", "GSM862825", "GSM862826", "GSM862827", "GSM862828", "GSM862829", "GSM862830" ], "type": "genotype/variation", "id": "GDS4497_2" }, { "dataset_id": "GDS4497", "description": "erythroleukemia", "sample_id": [ "GSM862823" ], "type": "disease state", "id": "GDS4497_3" }, { "dataset_id": "GDS4497", "description": "acute myeloid leukemia", "sample_id": [ "GSM862824", "GSM862825", "GSM862826", "GSM862827", "GSM862828", "GSM862829", "GSM862830", "GSM862831", "GSM862832", "GSM862833" ], "type": "disease state", "id": "GDS4497_4" }, { "dataset_id": "GDS4497", "description": "CML in blast crisis", "sample_id": [ "GSM862834" ], "type": "disease state", "id": "GDS4497_5" }, { "dataset_id": "GDS4497", "description": "HEL", "sample_id": [ "GSM862823" ], "type": "cell line", "id": "GDS4497_6" }, { "dataset_id": "GDS4497", "description": "HL60", "sample_id": [ "GSM862824" ], "type": "cell line", "id": "GDS4497_7" }, { "dataset_id": "GDS4497", "description": "K052", "sample_id": [ "GSM862825" ], "type": "cell line", "id": "GDS4497_8" }, { "dataset_id": "GDS4497", "description": "THP1", "sample_id": [ "GSM862826" ], "type": "cell line", "id": "GDS4497_9" }, { "dataset_id": "GDS4497", "description": "FKH-1", "sample_id": [ "GSM862827" ], "type": "cell line", "id": "GDS4497_10" }, { "dataset_id": "GDS4497", "description": "K051", "sample_id": [ "GSM862828" ], "type": "cell line", "id": "GDS4497_11" }, { "dataset_id": "GDS4497", "description": "NH", "sample_id": [ "GSM862829" ], "type": "cell line", "id": "GDS4497_12" }, { "dataset_id": "GDS4497", "description": "OIH1", "sample_id": [ "GSM862830" ], "type": "cell line", "id": "GDS4497_13" }, { "dataset_id": "GDS4497", "description": "UCSD/AML1", "sample_id": [ "GSM862831" ], "type": "cell line", "id": "GDS4497_14" }, { "dataset_id": "GDS4497", "description": "HNT-34", "sample_id": [ "GSM862832" ], "type": "cell line", "id": "GDS4497_15" }, { "dataset_id": "GDS4497", "description": "Kasumi-3", "sample_id": [ "GSM862833" ], "type": "cell line", "id": "GDS4497_16" }, { "dataset_id": "GDS4497", "description": "MOLM1", "sample_id": [ "GSM862834" ], "type": "cell line", "id": "GDS4497_17" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4497", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4497.tab", "compression": "gz" } ], [ [ "GDS4498.tab" ], { "title": "Transcription factor Nrf2 gain-of-function model: postnatal day 2.5 whole skin", "description": "Analysis of whole skin from female, K5cre-caNrf2 transgenics at P2.5. Nrf2 activation induced epidermal thickening and hyperkeratosis resembling human skin disease lamellar ichthyosis. Results provide insight into the role of Nrf2 as a regulator of protective functions of the epidermis.", "type": "Expression profiling by array", "pubmed_id": "22383093", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE35160", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4498", "description": "K5cre-caNrf2 (tg/tg) transgenic", "sample_id": [ "GSM862835", "GSM862836", "GSM862837" ], "type": "genotype/variation", "id": "GDS4498_1" }, { "dataset_id": "GDS4498", "description": "K5cre-wt (tg/wt) wild type control", "sample_id": [ "GSM862838", "GSM862839", "GSM862840" ], "type": "genotype/variation", "id": "GDS4498_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4498", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4498.tab", "compression": "gz" } ], [ [ "GDS4499.tab" ], { "title": "Larval brains and imaginal discs with centrosome loss or amplification", "description": "Analysis of 3rd instar larval brains and imaginal discs that lack centrosomes (DSas-4 and DSas-6) or have too many centrosomes (SakOE). Centrosome defects are common to many cancers. Results provide insight into the effects of centrosome loss or amplification on cell physiology.", "type": "Expression profiling by array", "pubmed_id": "23213376", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE35240", "order": "none", "update_date": "Jun 17 2013", "subsets": [ { "dataset_id": "GDS4499", "description": "DSas-4 mutant", "sample_id": [ "GSM864362", "GSM864363", "GSM864364" ], "type": "strain", "id": "GDS4499_1" }, { "dataset_id": "GDS4499", "description": "DSas-6 mutant", "sample_id": [ "GSM864365", "GSM864366", "GSM864367" ], "type": "strain", "id": "GDS4499_2" }, { "dataset_id": "GDS4499", "description": "SakOE", "sample_id": [ "GSM864368", "GSM864369", "GSM864370" ], "type": "strain", "id": "GDS4499_3" }, { "dataset_id": "GDS4499", "description": "white 67 wild type", "sample_id": [ "GSM864371", "GSM864372", "GSM864373" ], "type": "strain", "id": "GDS4499_4" }, { "dataset_id": "GDS4499", "description": "OregonR wild type", "sample_id": [ "GSM864374", "GSM864375", "GSM864376" ], "type": "strain", "id": "GDS4499_5" }, { "dataset_id": "GDS4499", "description": "centrosome loss", "sample_id": [ "GSM864362", "GSM864363", "GSM864364", "GSM864365", "GSM864366", "GSM864367" ], "type": "genotype/variation", "id": "GDS4499_6" }, { "dataset_id": "GDS4499", "description": "centrosome amplification", "sample_id": [ "GSM864368", "GSM864369", "GSM864370" ], "type": "genotype/variation", "id": "GDS4499_7" }, { "dataset_id": "GDS4499", "description": "control", "sample_id": [ "GSM864371", "GSM864372", "GSM864373", "GSM864374", "GSM864375", "GSM864376" ], "type": "genotype/variation", "id": "GDS4499_8" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS4499", "version": 1.0, "instances": "15", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4499.tab", "compression": "gz" } ], [ [ "GDS45.tab" ], { "title": "Cochlear hair cell line differentiation time course (Mu11K-A)", "description": "Gene expression profile of differentiation of inner ear hair cell precursors in vitro. A conditionally immortal cell line derived from the mouse cochlea, UB/OC-1, examined from 0 to 14 days.", "type": "Expression profiling by array", "pubmed_id": "12097346", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE36", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS45", "description": "0 day", "sample_id": [ "GSM1517", "GSM1529" ], "type": "time", "id": "GDS45_1" }, { "dataset_id": "GDS45", "description": "1 day", "sample_id": [ "GSM1518" ], "type": "time", "id": "GDS45_2" }, { "dataset_id": "GDS45", "description": "2 day", "sample_id": [ "GSM1519", "GSM1530" ], "type": "time", "id": "GDS45_3" }, { "dataset_id": "GDS45", "description": "3 day", "sample_id": [ "GSM1520" ], "type": "time", "id": "GDS45_4" }, { "dataset_id": "GDS45", "description": "4 day", "sample_id": [ "GSM1521", "GSM1531" ], "type": "time", "id": "GDS45_5" }, { "dataset_id": "GDS45", "description": "5 day", "sample_id": [ "GSM1522" ], "type": "time", "id": "GDS45_6" }, { "dataset_id": "GDS45", "description": "6 day", "sample_id": [ "GSM1523" ], "type": "time", "id": "GDS45_7" }, { "dataset_id": "GDS45", "description": "7 day", "sample_id": [ "GSM1524" ], "type": "time", "id": "GDS45_8" }, { "dataset_id": "GDS45", "description": "8 day", "sample_id": [ "GSM1525" ], "type": "time", "id": "GDS45_9" }, { "dataset_id": "GDS45", "description": "9 day", "sample_id": [ "GSM1526", "GSM1532" ], "type": "time", "id": "GDS45_10" }, { "dataset_id": "GDS45", "description": "11 day", "sample_id": [ "GSM1527" ], "type": "time", "id": "GDS45_11" }, { "dataset_id": "GDS45", "description": "14 day", "sample_id": [ "GSM1528" ], "type": "time", "id": "GDS45_12" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS45", "version": 1.0, "instances": "16", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS45.tab", "compression": "gz" } ], [ [ "GDS4500.tab" ], { "title": "Acute myeloid leukemia with mutated nucleophosmin: bone marrow blasts (training set)", "description": "Analysis of AML blasts displaying aberrant cytoplasmic localization of nucleophosmin (NPMc+ AML) but negative for AML-associated chromosomal translocations. Results provide insight into putative predictors of NPM status.", "type": "Expression profiling by array", "pubmed_id": "15831697", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE34860", "order": "none", "update_date": "Jun 17 2013", "subsets": [ { "dataset_id": "GDS4500", "description": "NPM status: mutated", "sample_id": [ "GSM856203", "GSM856204", "GSM856205", "GSM856206", "GSM856207", "GSM856208", "GSM856209", "GSM856210", "GSM856211", "GSM856212", "GSM856213", "GSM856214", "GSM856215", "GSM856216", "GSM856217", "GSM856218", "GSM856219", "GSM856220", "GSM856221", "GSM856222", "GSM856223", "GSM856224", "GSM856225", "GSM856226", "GSM856227", "GSM856228", "GSM856229", "GSM856230", "GSM856231" ], "type": "genotype/variation", "id": "GDS4500_1" }, { "dataset_id": "GDS4500", "description": "NPM status: wild type", "sample_id": [ "GSM856232", "GSM856233", "GSM856234", "GSM856235", "GSM856236", "GSM856237", "GSM856238", "GSM856239", "GSM856240", "GSM856241" ], "type": "genotype/variation", "id": "GDS4500_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4500", "version": 1.0, "instances": "39", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4500.tab", "compression": "gz" } ], [ [ "GDS4501.tab" ], { "title": "Acute myeloid leukemia with mutated nucleophosmin: bone marrow blasts (test set)", "description": "Analysis of AML blasts displaying aberrant cytoplasmic localization of nucleophosmin (NPMc+ AML) but negative for AML-associated chromosomal translocations. Results provide insight into the validity of the putative predictors of NPM status identified by the training set.", "type": "Expression profiling by array", "pubmed_id": "15831697", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "count", "reference_series": "GSE34860", "order": "none", "update_date": "Jun 17 2013", "subsets": [ { "dataset_id": "GDS4501", "description": "NPM status: mutated", "sample_id": [ "GSM856242", "GSM856243", "GSM856244", "GSM856245", "GSM856246", "GSM856247", "GSM856248", "GSM856249", "GSM856250", "GSM856251", "GSM856252", "GSM856253", "GSM856254", "GSM856255", "GSM856256", "GSM856257", "GSM856258", "GSM856259", "GSM856260", "GSM856261", "GSM856262", "GSM856263", "GSM856264", "GSM856265", "GSM856266", "GSM856267", "GSM856268", "GSM856269" ], "type": "genotype/variation", "id": "GDS4501_1" }, { "dataset_id": "GDS4501", "description": "NPM status: wild type", "sample_id": [ "GSM856270", "GSM856271", "GSM856272", "GSM856273", "GSM856274", "GSM856275", "GSM856276", "GSM856277", "GSM856278", "GSM856279", "GSM856280" ], "type": "genotype/variation", "id": "GDS4501_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4501", "version": 1.0, "instances": "39", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4501.tab", "compression": "gz" } ], [ [ "GDS4502.tab" ], { "title": "Models of Neuronal Migration Defects: time course", "description": "Analysis of brains from 4 models of human neuronal migration defects (Lis1, Dcx, Ywhae, Ndel) at 3 developmental stages. Neuronal migration defects (NMDs) are an important cause of severe epilepsy and mental retardation. Results provide insight into molecular mechanisms underlying the NMDs.", "type": "Expression profiling by array", "pubmed_id": "21423666", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "78", "value_type": "transformed count", "reference_series": "GSE35366", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4502", "description": "Embryonic day 14", "sample_id": [ "GSM866855", "GSM866856", "GSM866857", "GSM866843", "GSM866844", "GSM866845", "GSM866852", "GSM866853", "GSM866854", "GSM866849", "GSM866850", "GSM866851", "GSM866846", "GSM866847", "GSM866848", "GSM866834", "GSM866835", "GSM866836", "GSM866840", "GSM866841", "GSM866842", "GSM866837", "GSM866838", "GSM866839" ], "type": "age", "id": "GDS4502_1" }, { "dataset_id": "GDS4502", "description": "Postpartum day 0", "sample_id": [ "GSM866885", "GSM866886", "GSM866887", "GSM866861", "GSM866862", "GSM866863", "GSM866858", "GSM866859", "GSM866860", "GSM866876", "GSM866877", "GSM866878", "GSM866873", "GSM866874", "GSM866875", "GSM866867", "GSM866868", "GSM866869", "GSM866864", "GSM866865", "GSM866866", "GSM866870", "GSM866871", "GSM866872", "GSM866882", "GSM866883", "GSM866884", "GSM866879", "GSM866880", "GSM866881" ], "type": "age", "id": "GDS4502_2" }, { "dataset_id": "GDS4502", "description": "Postpartum day14", "sample_id": [ "GSM866888", "GSM866889", "GSM866890", "GSM866891", "GSM866892", "GSM866893", "GSM866894", "GSM866895", "GSM866896", "GSM866903", "GSM866904", "GSM866905", "GSM866909", "GSM866910", "GSM866911", "GSM866906", "GSM866907", "GSM866908", "GSM866897", "GSM866898", "GSM866899", "GSM866900", "GSM866901", "GSM866902" ], "type": "age", "id": "GDS4502_3" }, { "dataset_id": "GDS4502", "description": "wild type inbred 129S6", "sample_id": [ "GSM866861", "GSM866862", "GSM866863", "GSM866900", "GSM866901", "GSM866902" ], "type": "genotype/variation", "id": "GDS4502_4" }, { "dataset_id": "GDS4502", "description": "wild type mixA", "sample_id": [ "GSM866846", "GSM866847", "GSM866848", "GSM866858", "GSM866859", "GSM866860", "GSM866894", "GSM866895", "GSM866896" ], "type": "genotype/variation", "id": "GDS4502_5" }, { "dataset_id": "GDS4502", "description": "wild type mixB", "sample_id": [ "GSM866834", "GSM866835", "GSM866836", "GSM866876", "GSM866877", "GSM866878", "GSM866903", "GSM866904", "GSM866905" ], "type": "genotype/variation", "id": "GDS4502_6" }, { "dataset_id": "GDS4502", "description": "mutant 14-3-3E ko/ko", "sample_id": [ "GSM866855", "GSM866856", "GSM866857" ], "type": "genotype/variation", "id": "GDS4502_7" }, { "dataset_id": "GDS4502", "description": "mutant 14-3-3E ko/ko inbred", "sample_id": [ "GSM866873", "GSM866874", "GSM866875" ], "type": "genotype/variation", "id": "GDS4502_8" }, { "dataset_id": "GDS4502", "description": "mutant Dcx ko/Y", "sample_id": [ "GSM866843", "GSM866844", "GSM866845", "GSM866885", "GSM866886", "GSM866887" ], "type": "genotype/variation", "id": "GDS4502_9" }, { "dataset_id": "GDS4502", "description": "mutant Lis1 ko/+", "sample_id": [ "GSM866849", "GSM866850", "GSM866851", "GSM866864", "GSM866865", "GSM866866", "GSM866891", "GSM866892", "GSM866893" ], "type": "genotype/variation", "id": "GDS4502_10" }, { "dataset_id": "GDS4502", "description": "mutant Lis1 ko/cko", "sample_id": [ "GSM866852", "GSM866853", "GSM866854", "GSM866867", "GSM866868", "GSM866869", "GSM866888", "GSM866889", "GSM866890" ], "type": "genotype/variation", "id": "GDS4502_11" }, { "dataset_id": "GDS4502", "description": "mutant Ndel ko/+", "sample_id": [ "GSM866837", "GSM866838", "GSM866839", "GSM866879", "GSM866880", "GSM866881", "GSM866906", "GSM866907", "GSM866908" ], "type": "genotype/variation", "id": "GDS4502_12" }, { "dataset_id": "GDS4502", "description": "mutant Ndel ko/+ inbred", "sample_id": [ "GSM866870", "GSM866871", "GSM866872" ], "type": "genotype/variation", "id": "GDS4502_13" }, { "dataset_id": "GDS4502", "description": "mutant Ndel ko/+ mixB", "sample_id": [ "GSM866897", "GSM866898", "GSM866899" ], "type": "genotype/variation", "id": "GDS4502_14" }, { "dataset_id": "GDS4502", "description": "mutant Ndel ko/cko", "sample_id": [ "GSM866840", "GSM866841", "GSM866842", "GSM866882", "GSM866883", "GSM866884", "GSM866909", "GSM866910", "GSM866911" ], "type": "genotype/variation", "id": "GDS4502_15" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4502", "version": 1.0, "instances": "78", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4502.tab", "compression": "gz" } ], [ [ "GDS4503.tab" ], { "title": "Gonadal development: ovaries and testes", "description": "Analysis of gonads from fetal, neonatal and adult C57BL/6 males and females. Events during meiosis I prophase are critical for correct segregation of chromosomes. Defects in these events may contribute to infertility. Results provide insight into molecular mechanisms underlying meiosis I prophase.", "type": "Expression profiling by array", "pubmed_id": "22648182", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE35734", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4503", "description": "ovary", "sample_id": [ "GSM874243", "GSM874239", "GSM874241" ], "type": "tissue", "id": "GDS4503_1" }, { "dataset_id": "GDS4503", "description": "testis", "sample_id": [ "GSM874242", "GSM874238", "GSM874240" ], "type": "tissue", "id": "GDS4503_2" }, { "dataset_id": "GDS4503", "description": "15.5 days postcoitum", "sample_id": [ "GSM874243", "GSM874242" ], "type": "age", "id": "GDS4503_3" }, { "dataset_id": "GDS4503", "description": "neonatal day 1", "sample_id": [ "GSM874241", "GSM874240" ], "type": "age", "id": "GDS4503_4" }, { "dataset_id": "GDS4503", "description": "10 weeks postpartum", "sample_id": [ "GSM874238", "GSM874239" ], "type": "age", "id": "GDS4503_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4503", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4503.tab", "compression": "gz" } ], [ [ "GDS4504.tab" ], { "title": "Dicer1 deletion effect on bone marrow granulocyte-macrophage progenitors", "description": "Analysis of bone marrow-derived GMPs from Dicer1-deficient, C57BL/6 females. Dicer1 encodes an RNaseIII enzyme critical for miRNA biogenesis. Dicer1-deficient GMPs are defective in myeloid development in vitro. Results provide insight into the role of miRNAs in myeloid-lineage specification.", "type": "Expression profiling by array", "pubmed_id": "22353998", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE35844", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4504", "description": "Dicer null", "sample_id": [ "GSM876161", "GSM876162", "GSM876163" ], "type": "genotype/variation", "id": "GDS4504_1" }, { "dataset_id": "GDS4504", "description": "Dicer heterozygous deletion", "sample_id": [ "GSM876164", "GSM876165", "GSM876166" ], "type": "genotype/variation", "id": "GDS4504_2" }, { "dataset_id": "GDS4504", "description": "Dicer wild type", "sample_id": [ "GSM876167", "GSM876168", "GSM876169" ], "type": "genotype/variation", "id": "GDS4504_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4504", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4504.tab", "compression": "gz" } ], [ [ "GDS4505.tab" ], { "title": "Ascorbic acid effect on Mc3T3 osteoblasts", "description": "Analysis of osteoblast (OB) cell line Mc3T3-E1 stimulated with 50ug of ascorbic acid (AA) for 5 days. Procollagen synthesis/secretion is markedly up-regulated in OBs upon AA stimulation. Results provide insight into the molecular mechanisms underlying procollagen trafficking in stimulated OBs.", "type": "Expression profiling by array", "pubmed_id": [ "23050002", "23740245" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE37676", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS4505", "description": "control", "sample_id": [ "GSM925429", "GSM925430", "GSM925431" ], "type": "agent", "id": "GDS4505_1" }, { "dataset_id": "GDS4505", "description": "ascorbic acid", "sample_id": [ "GSM925432", "GSM925433", "GSM925434" ], "type": "agent", "id": "GDS4505_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4505", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4505.tab", "compression": "gz" } ], [ [ "GDS4506.tab" ], { "title": "Liver response to obesity and fasting", "description": "Analysis of liver endoplasmic reticulum (ER)-associated polysomes from leptin deficient (ob/ob) males after overnight fasting. The liver is critical for metabolic homeostasis. Results provide insight into molecular mechanisms underlying changes in protein metabolism caused by obesity and diabetes.", "type": "Expression profiling by array", "pubmed_id": "22927828", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE39375", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4506", "description": "ob/ob", "sample_id": [ "GSM967008", "GSM967010", "GSM967012", "GSM967014", "GSM967016" ], "type": "genotype/variation", "id": "GDS4506_1" }, { "dataset_id": "GDS4506", "description": "wild type", "sample_id": [ "GSM967009", "GSM967011", "GSM967013", "GSM967015", "GSM967017" ], "type": "genotype/variation", "id": "GDS4506_2" }, { "dataset_id": "GDS4506", "description": "overnight fasted", "sample_id": [ "GSM967008", "GSM967009", "GSM967016", "GSM967017" ], "type": "protocol", "id": "GDS4506_3" }, { "dataset_id": "GDS4506", "description": "ad libitum fed", "sample_id": [ "GSM967010", "GSM967011", "GSM967012", "GSM967013", "GSM967014", "GSM967015" ], "type": "protocol", "id": "GDS4506_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4506", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4506.tab", "compression": "gz" } ], [ [ "GDS4507.tab" ], { "title": "Endoplasmic reticulum thiol oxidase deficiency effect on embryonic fibroblasts", "description": "Analysis of MEFs deficient in ER thiol oxidases (ERO1a, ERO1b) and PRDX4, enzymes that initiate the disulfide relay. Combined loss-of-function mutations compromise the extracellular matrix and interfere with procollagen maturation. Results provide insight into the molecular basis of these defects.", "type": "Expression profiling by array", "pubmed_id": "22981861", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE39492", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4507", "description": "wild type", "sample_id": [ "GSM970182", "GSM970183", "GSM970184" ], "type": "genotype/variation", "id": "GDS4507_1" }, { "dataset_id": "GDS4507", "description": "ERO1\u03b1 and \u03b2 double mutant", "sample_id": [ "GSM970185", "GSM970186", "GSM970187" ], "type": "genotype/variation", "id": "GDS4507_2" }, { "dataset_id": "GDS4507", "description": "PRDX4 KO, ERO1\u03b1 and \u03b2 double mutant", "sample_id": [ "GSM970188", "GSM970189", "GSM970190" ], "type": "genotype/variation", "id": "GDS4507_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4507", "version": 1.0, "instances": "9", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4507.tab", "compression": "gz" } ], [ [ "GDS4508.tab" ], { "title": "Histone methyltransferase ESET knockout effect on embryonic dorsal telencephalon", "description": "Analysis of dorsal telencephalon from E14.5 embryos depleted of histone methyltransferase ESET. ESET ablation leads to decreased H3K9 trimethylation and misregulation of genes resulting in severe brain defects and embryonic lethality. Results provide insight into role of ESET in brain development.", "type": "Expression profiling by array", "pubmed_id": "22991445", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE40296", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4508", "description": "wild type", "sample_id": [ "GSM990998", "GSM990999", "GSM991000" ], "type": "genotype/variation", "id": "GDS4508_1" }, { "dataset_id": "GDS4508", "description": "histone methyltransferase ESET conditional KO", "sample_id": [ "GSM991001", "GSM991002", "GSM991003" ], "type": "genotype/variation", "id": "GDS4508_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4508", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4508.tab", "compression": "gz" } ], [ [ "GDS4509.tab" ], { "title": "Progeroid and revertant phenotypes in primary dermal fibroblast cell line GM00038", "description": "Analysis of fibroblasts expressing progerin (the mutant lamin A associated with progeria) or elevated levels of wildtype prelamin A. Cells subsequently reverted towards normal by farnesyltransferase inhibitor (FTI) or ZMPSTE24 treatment. Results identify potential effector of lamin A dysfunction.", "type": "Expression profiling by array", "pubmed_id": "22948034", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE40404", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4509", "description": "prelamin A", "sample_id": [ "GSM992923" ], "type": "protocol", "id": "GDS4509_1" }, { "dataset_id": "GDS4509", "description": "prelamin A + ZMPSTE24", "sample_id": [ "GSM992924" ], "type": "protocol", "id": "GDS4509_2" }, { "dataset_id": "GDS4509", "description": "prelamin A + FTI", "sample_id": [ "GSM992925" ], "type": "protocol", "id": "GDS4509_3" }, { "dataset_id": "GDS4509", "description": "control", "sample_id": [ "GSM992926", "GSM992927" ], "type": "protocol", "id": "GDS4509_4" }, { "dataset_id": "GDS4509", "description": "progerin", "sample_id": [ "GSM992928" ], "type": "protocol", "id": "GDS4509_5" }, { "dataset_id": "GDS4509", "description": "progerin + FTI", "sample_id": [ "GSM992929" ], "type": "protocol", "id": "GDS4509_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4509", "version": 1.0, "instances": "7", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4509.tab", "compression": "gz" } ], [ [ "GDS451.tab" ], { "title": "Flower development (AtGenome1)", "description": "Dissection of flowering pathways using photoperiod floral induction of plants that have combinations of different FRIGIDA (FRI) and FLOWERING LOCUS C (FLC) alleles. Shoot apex examined at 0, 2 and 4 days after floral induction.", "type": "Expression profiling by array", "pubmed_id": "14573523", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE577", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS451", "description": "0 day", "sample_id": [ "GSM8868", "GSM8871", "GSM8874", "GSM8877" ], "type": "time", "id": "GDS451_1" }, { "dataset_id": "GDS451", "description": "2 day", "sample_id": [ "GSM8869", "GSM8872", "GSM8875", "GSM8878" ], "type": "time", "id": "GDS451_2" }, { "dataset_id": "GDS451", "description": "4 day", "sample_id": [ "GSM8870", "GSM8873", "GSM8876", "GSM8879" ], "type": "time", "id": "GDS451_3" }, { "dataset_id": "GDS451", "description": "fri-FLC", "sample_id": [ "GSM8868", "GSM8869", "GSM8870" ], "type": "strain", "id": "GDS451_4" }, { "dataset_id": "GDS451", "description": "fri-flc", "sample_id": [ "GSM8871", "GSM8872", "GSM8873" ], "type": "strain", "id": "GDS451_5" }, { "dataset_id": "GDS451", "description": "FRI-FLC", "sample_id": [ "GSM8874", "GSM8875", "GSM8876" ], "type": "strain", "id": "GDS451_6" }, { "dataset_id": "GDS451", "description": "FRI-flc", "sample_id": [ "GSM8877", "GSM8878", "GSM8879" ], "type": "strain", "id": "GDS451_7" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS451", "version": 1.0, "instances": "12", "variables": 7548, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS451.tab", "compression": "gz" } ], [ [ "GDS4510.tab" ], { "title": "rd1 model of retinal degeneration: time course", "description": "Analysis of rd1 retinas starting at P2 (prior to obvious biochemical/morphological differences) and ending at P8 (early degenerative changes present, but prior to onset of rod photoreceptor cell death). Results provide insight into molecular mechanisms underlying photoreceptor development.", "type": "Expression profiling by array", "pubmed_id": "23241222", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE41821", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4510", "description": "wild type", "sample_id": [ "GSM1024803", "GSM1024804", "GSM1024805", "GSM1024806", "GSM1024807", "GSM1024808", "GSM1024809", "GSM1024810", "GSM1024811", "GSM1024812", "GSM1024813", "GSM1024814", "GSM1024815", "GSM1024816", "GSM1024817", "GSM1024818" ], "type": "genotype/variation", "id": "GDS4510_1" }, { "dataset_id": "GDS4510", "description": "rd1", "sample_id": [ "GSM1024819", "GSM1024820", "GSM1024821", "GSM1024822", "GSM1024823", "GSM1024824", "GSM1024825", "GSM1024826", "GSM1024827", "GSM1024828", "GSM1024829", "GSM1024830", "GSM1024831", "GSM1024832", "GSM1024833", "GSM1024834" ], "type": "genotype/variation", "id": "GDS4510_2" }, { "dataset_id": "GDS4510", "description": "postnatal day 2", "sample_id": [ "GSM1024806", "GSM1024805", "GSM1024804", "GSM1024803", "GSM1024822", "GSM1024821", "GSM1024820", "GSM1024819" ], "type": "age", "id": "GDS4510_3" }, { "dataset_id": "GDS4510", "description": "postnatal day 4", "sample_id": [ "GSM1024826", "GSM1024825", "GSM1024824", "GSM1024823", "GSM1024810", "GSM1024809", "GSM1024808", "GSM1024807" ], "type": "age", "id": "GDS4510_4" }, { "dataset_id": "GDS4510", "description": "postnatal day 6", "sample_id": [ "GSM1024830", "GSM1024829", "GSM1024828", "GSM1024827", "GSM1024814", "GSM1024813", "GSM1024812", "GSM1024811" ], "type": "age", "id": "GDS4510_5" }, { "dataset_id": "GDS4510", "description": "postnatal day 8", "sample_id": [ "GSM1024834", "GSM1024833", "GSM1024832", "GSM1024831", "GSM1024818", "GSM1024817", "GSM1024816", "GSM1024815" ], "type": "age", "id": "GDS4510_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4510", "version": 1.0, "instances": "32", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4510.tab", "compression": "gz" } ], [ [ "GDS4511.tab" ], { "title": "Primary colorectal cancer HT29 cell line colonospheres", "description": "Analysis of colonospheres from primary colorectal cancer (CRC) cell line HT29. Results provide insight into potential regulators governing stemness and malignancy traits in CRC colonospheres", "type": "Expression profiling by array", "pubmed_id": "21640118", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE14773", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4511", "description": "HT29, parental", "sample_id": [ "GSM368860", "GSM368863" ], "type": "cell line", "id": "GDS4511_1" }, { "dataset_id": "GDS4511", "description": "HT29, 1st spheres", "sample_id": [ "GSM368864", "GSM368865" ], "type": "cell line", "id": "GDS4511_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4511", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4511.tab", "compression": "gz" } ], [ [ "GDS4512.tab" ], { "title": "Sonic hedgehog homolog-stimulated fibroblasts", "description": "Analysis of CCD-18Co colon myofibroblasts stimulated with Sonic hedgehog homolog (SHH) for 72hr. Hedgehog (Hh)-driven, CCD-18Co proangiogenic signals drive tumor angiogenesis in vitro and in vivo. Results provide insight into the molecular mechanisms underlying Hh regulation of tumor angiogenesis.", "type": "Expression profiling by array", "pubmed_id": "21597001", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE29316", "order": "none", "update_date": "Jun 19 2013", "subsets": [ { "dataset_id": "GDS4512", "description": "control", "sample_id": [ "GSM724521", "GSM724522", "GSM724523" ], "type": "agent", "id": "GDS4512_1" }, { "dataset_id": "GDS4512", "description": "Sonic hedgehog homolog", "sample_id": [ "GSM724524", "GSM724525", "GSM724526" ], "type": "agent", "id": "GDS4512_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4512", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4512.tab", "compression": "gz" } ], [ [ "GDS4513.tab" ], { "title": "Clinical outcome of stage UICC II colon cancer patients", "description": "Analysis of tumor cells from sporadic stage UICC II colon cancer patients who were treated by elective standard oncological resection but developed relapse during follow-up. Results provide insight into the challenges of constructing molecular signatures predictive for patient outcome.", "type": "Expression profiling by array", "pubmed_id": "21465190", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "53", "value_type": "transformed count", "reference_series": "GSE18088", "order": "none", "update_date": "Jun 18 2013", "subsets": [ { "dataset_id": "GDS4513", "description": "no relapse", "sample_id": [ "GSM452148", "GSM452149", "GSM452150", "GSM452151", "GSM452152", "GSM452153", "GSM452154", "GSM452155", "GSM452156", "GSM452157", "GSM452158", "GSM452160", "GSM452162", "GSM452163", "GSM452166", "GSM452167", "GSM452168", "GSM452169", "GSM452170", "GSM452172", "GSM452173", "GSM452174", "GSM452176", "GSM452179", "GSM452180", "GSM452181", "GSM452182", "GSM452183", "GSM452184", "GSM452185", "GSM452186", "GSM452187", "GSM452188", "GSM452189", "GSM452193", "GSM452195", "GSM452196", "GSM452197", "GSM452198", "GSM452199" ], "type": "disease state", "id": "GDS4513_1" }, { "dataset_id": "GDS4513", "description": "relapse", "sample_id": [ "GSM452159", "GSM452161", "GSM452164", "GSM452165", "GSM452171", "GSM452175", "GSM452177", "GSM452178", "GSM452190", "GSM452191", "GSM452192", "GSM452194", "GSM452200" ], "type": "disease state", "id": "GDS4513_2" }, { "dataset_id": "GDS4513", "description": "tumor localization: distal", "sample_id": [ "GSM452149", "GSM452150", "GSM452152", "GSM452154", "GSM452160", "GSM452167", "GSM452182", "GSM452185", "GSM452186", "GSM452187", "GSM452189", "GSM452195", "GSM452196", "GSM452197", "GSM452198", "GSM452199", "GSM452165", "GSM452171", "GSM452175", "GSM452177", "GSM452190", "GSM452191", "GSM452192", "GSM452194", "GSM452200" ], "type": "other", "id": "GDS4513_3" }, { "dataset_id": "GDS4513", "description": "tumor localization: proximal", "sample_id": [ "GSM452148", "GSM452151", "GSM452153", "GSM452155", "GSM452156", "GSM452157", "GSM452158", "GSM452162", "GSM452163", "GSM452166", "GSM452168", "GSM452169", "GSM452170", "GSM452172", "GSM452173", "GSM452174", "GSM452176", "GSM452179", "GSM452180", "GSM452181", "GSM452183", "GSM452184", "GSM452188", "GSM452193", "GSM452159", "GSM452161", "GSM452164", "GSM452178" ], "type": "other", "id": "GDS4513_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4513", "version": 1.0, "instances": "53", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4513.tab", "compression": "gz" } ], [ [ "GDS4514.tab" ], { "title": "EphB2-selected populations of intestinal crypt cells", "description": "Analysis of intestinal epithelial cells FACS-sorted according to high, medium or low EphB2 receptor levels. Intestinal stem cells (ISC) highly express EphB2 receptor which becomes gradually silenced as cells differentiate. Results provide insight into a molecular program specific for normal ISCs.", "type": "Expression profiling by array", "pubmed_id": "21419747", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE27605", "order": "none", "update_date": "Jun 19 2013", "subsets": [ { "dataset_id": "GDS4514", "description": "EphB2 High", "sample_id": [ "GSM684322", "GSM684319" ], "type": "cell type", "id": "GDS4514_1" }, { "dataset_id": "GDS4514", "description": "EphB2 Low", "sample_id": [ "GSM684321", "GSM684324" ], "type": "cell type", "id": "GDS4514_2" }, { "dataset_id": "GDS4514", "description": "EphB2 Medium", "sample_id": [ "GSM684323", "GSM684320" ], "type": "cell type", "id": "GDS4514_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4514", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4514.tab", "compression": "gz" } ], [ [ "GDS4515.tab" ], { "title": "Microsatellite-unstable colorectal cancer", "description": "Analysis of colorectal adenocarcinomas with microsatellite instability (MSI CRCs). MSI, caused by defects in the mismatch repair system, is observed in a subset of CRCs. Results provide insight into molecular mechanisms contributing to MSI CRC development.", "type": "Expression profiling by array", "pubmed_id": "21544814", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "49", "value_type": "transformed count", "reference_series": "GSE24514", "order": "none", "update_date": "Jun 24 2013", "subsets": [ { "dataset_id": "GDS4515", "description": "microsatellite-unstable colorectal tumor", "sample_id": [ "GSM604484", "GSM604485", "GSM604486", "GSM604487", "GSM604488", "GSM604489", "GSM604490", "GSM604491", "GSM604492", "GSM604493", "GSM604494", "GSM604495", "GSM604496", "GSM604497", "GSM604498", "GSM604499", "GSM604500", "GSM604501", "GSM604502", "GSM604503", "GSM604504", "GSM604505", "GSM604506", "GSM604507", "GSM604508", "GSM604509", "GSM604510", "GSM604511", "GSM604512", "GSM604513", "GSM604514", "GSM604515", "GSM604516", "GSM604517" ], "type": "disease state", "id": "GDS4515_1" }, { "dataset_id": "GDS4515", "description": "normal colonic mucosa", "sample_id": [ "GSM604518", "GSM604519", "GSM604520", "GSM604521", "GSM604522", "GSM604523", "GSM604524", "GSM604525", "GSM604526", "GSM604527", "GSM604528", "GSM604529", "GSM604530", "GSM604531", "GSM604532" ], "type": "disease state", "id": "GDS4515_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4515", "version": 1.0, "instances": "49", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4515.tab", "compression": "gz" } ], [ [ "GDS4516.tab" ], { "title": "Colorectal cancer: laser microdissected tumor tissues", "description": "Analysis of LCM-isolated colorectal cancer (CRC) tumors representing various stages and metastases. Results provide insight into predictive biomarkers of metastasis and treatment targets in CRC.", "type": "Expression profiling by array", "pubmed_id": "21270110", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "104", "value_type": "transformed count", "reference_series": "GSE21510", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4516", "description": "no metastasis", "sample_id": [ "GSM537331", "GSM537332", "GSM537333", "GSM537334", "GSM537336", "GSM537337", "GSM537338", "GSM537341", "GSM537342", "GSM537345", "GSM537347", "GSM537348", "GSM537349", "GSM537350", "GSM537353", "GSM537354", "GSM537355", "GSM537356", "GSM537357", "GSM537358", "GSM537361", "GSM537362", "GSM537363", "GSM537366", "GSM537368", "GSM537370", "GSM537371", "GSM537374", "GSM537375", "GSM537376", "GSM537377", "GSM537378", "GSM537379", "GSM537380", "GSM537381", "GSM537383", "GSM537386", "GSM537388", "GSM537389", "GSM537390", "GSM537392", "GSM537393", "GSM537395", "GSM537398", "GSM537399", "GSM537400", "GSM537402", "GSM537404", "GSM537405", "GSM537407", "GSM537408", "GSM537409", "GSM537410", "GSM537413", "GSM537415", "GSM537417", "GSM537418", "GSM537421", "GSM537422", "GSM537423", "GSM537424", "GSM537425", "GSM537427", "GSM537428", "GSM537430", "GSM537432" ], "type": "disease state", "id": "GDS4516_1" }, { "dataset_id": "GDS4516", "description": "metastatic recurrence", "sample_id": [ "GSM537330", "GSM537343", "GSM537367", "GSM537369", "GSM537373", "GSM537382", "GSM537385", "GSM537387", "GSM537391", "GSM537396", "GSM537397", "GSM537401", "GSM537414", "GSM537419", "GSM537420", "GSM537429", "GSM537431", "GSM537433" ], "type": "disease state", "id": "GDS4516_2" }, { "dataset_id": "GDS4516", "description": "metastasis", "sample_id": [ "GSM537335", "GSM537339", "GSM537340", "GSM537344", "GSM537346", "GSM537351", "GSM537352", "GSM537359", "GSM537360", "GSM537364", "GSM537365", "GSM537372", "GSM537384", "GSM537394", "GSM537403", "GSM537406", "GSM537411", "GSM537412", "GSM537416", "GSM537426" ], "type": "disease state", "id": "GDS4516_3" }, { "dataset_id": "GDS4516", "description": "stage: 1", "sample_id": [ "GSM537341", "GSM537345", "GSM537355", "GSM537366", "GSM537370", "GSM537380", "GSM537392", "GSM537415", "GSM537417", "GSM537422", "GSM537423", "GSM537427", "GSM537430" ], "type": "other", "id": "GDS4516_4" }, { "dataset_id": "GDS4516", "description": "stage: 2a", "sample_id": [ "GSM537336", "GSM537337", "GSM537348", "GSM537349", "GSM537356", "GSM537361", "GSM537374", "GSM537377", "GSM537378", "GSM537379", "GSM537383", "GSM537388", "GSM537395", "GSM537400", "GSM537404", "GSM537409", "GSM537418", "GSM537425", "GSM537396", "GSM537397" ], "type": "other", "id": "GDS4516_5" }, { "dataset_id": "GDS4516", "description": "stage: 2b", "sample_id": [ "GSM537333", "GSM537342", "GSM537347", "GSM537350", "GSM537362", "GSM537363", "GSM537368", "GSM537376", "GSM537381", "GSM537386", "GSM537398", "GSM537402", "GSM537405", "GSM537330", "GSM537369", "GSM537373", "GSM537401" ], "type": "other", "id": "GDS4516_6" }, { "dataset_id": "GDS4516", "description": "stage: 3a", "sample_id": [ "GSM537371", "GSM537421", "GSM537424", "GSM537432" ], "type": "other", "id": "GDS4516_7" }, { "dataset_id": "GDS4516", "description": "stage: 3b", "sample_id": [ "GSM537331", "GSM537332", "GSM537334", "GSM537338", "GSM537353", "GSM537357", "GSM537358", "GSM537375", "GSM537389", "GSM537390", "GSM537393", "GSM537399", "GSM537407", "GSM537408", "GSM537428", "GSM537343", "GSM537367", "GSM537382", "GSM537385", "GSM537391", "GSM537419", "GSM537420", "GSM537429", "GSM537431" ], "type": "other", "id": "GDS4516_8" }, { "dataset_id": "GDS4516", "description": "stage: 3c", "sample_id": [ "GSM537354", "GSM537410", "GSM537413", "GSM537387", "GSM537414", "GSM537433" ], "type": "other", "id": "GDS4516_9" }, { "dataset_id": "GDS4516", "description": "stage: 4", "sample_id": [ "GSM537335", "GSM537339", "GSM537340", "GSM537344", "GSM537346", "GSM537351", "GSM537352", "GSM537359", "GSM537360", "GSM537364", "GSM537365", "GSM537372", "GSM537384", "GSM537394", "GSM537403", "GSM537406", "GSM537411", "GSM537412", "GSM537416", "GSM537426" ], "type": "other", "id": "GDS4516_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4516", "version": 1.0, "instances": "104", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4516.tab", "compression": "gz" } ], [ [ "GDS4517.tab" ], { "title": "Model for the manic pole of bipolar disorder: hippocampus", "description": "Analysis of hippocampi from Madison (MSN) and hsd:ICR (ICR) adult males. The inbred MSN strain displays a naturally manic phenotype relative to the outbred ICR ancestral strain. Results provide insight into molecular mechanisms underlying the manic pole of bipolar disorder.", "type": "Expression profiling by array", "pubmed_id": "22675514", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE29417", "order": "none", "update_date": "Sep 19 2013", "subsets": [ { "dataset_id": "GDS4517", "description": "Madison", "sample_id": [ "GSM727507", "GSM727508", "GSM727509", "GSM727510", "GSM727511", "GSM727512" ], "type": "strain", "id": "GDS4517_1" }, { "dataset_id": "GDS4517", "description": "ICR", "sample_id": [ "GSM727513", "GSM727514", "GSM727515", "GSM727516", "GSM727517", "GSM727518" ], "type": "strain", "id": "GDS4517_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4517", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4517.tab", "compression": "gz" } ], [ [ "GDS4518.tab" ], { "title": "Monocyte-derived macrophage response to Mycobacterium avium subspecies paratuberculosis in vitro infection: time course", "description": "Analysis of monocyte-derived macrophages isolated from Holstein-Friesian females in response to M. avium subsp. paratuberculosis (MPTb) infection in vitro for up to 24hrs. MPTb is the etiological agent of Johne's disease. Results provide insight into the molecular basis of the host immune response.", "type": "Expression profiling by array", "pubmed_id": "22455317", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE35185", "order": "none", "update_date": "Sep 20 2013", "subsets": [ { "dataset_id": "GDS4518", "description": "hour 0", "sample_id": [ "GSM823727", "GSM823728", "GSM823729", "GSM823730", "GSM823731", "GSM823732", "GSM823733" ], "type": "time", "id": "GDS4518_1" }, { "dataset_id": "GDS4518", "description": "hour 2", "sample_id": [ "GSM863156", "GSM863157", "GSM863158", "GSM863159", "GSM863160", "GSM863161", "GSM863162", "GSM823734", "GSM823735", "GSM823736", "GSM823737", "GSM823738", "GSM823739", "GSM823740" ], "type": "time", "id": "GDS4518_2" }, { "dataset_id": "GDS4518", "description": "hour 6", "sample_id": [ "GSM863163", "GSM863164", "GSM863165", "GSM863166", "GSM863167", "GSM863168", "GSM823741", "GSM823742", "GSM823743", "GSM823744", "GSM823745", "GSM823746", "GSM823747" ], "type": "time", "id": "GDS4518_3" }, { "dataset_id": "GDS4518", "description": "hour 24", "sample_id": [ "GSM863169", "GSM863170", "GSM863171", "GSM863172", "GSM863173", "GSM863174", "GSM863175", "GSM823748", "GSM823749", "GSM823750", "GSM823751", "GSM823752", "GSM823753", "GSM823754" ], "type": "time", "id": "GDS4518_4" }, { "dataset_id": "GDS4518", "description": "Mycobacterium avium subsp. paratuberculosis", "sample_id": [ "GSM863156", "GSM863157", "GSM863158", "GSM863159", "GSM863160", "GSM863161", "GSM863162", "GSM863169", "GSM863170", "GSM863171", "GSM863172", "GSM863173", "GSM863174", "GSM863175", "GSM863163", "GSM863164", "GSM863165", "GSM863166", "GSM863167", "GSM863168" ], "type": "infection", "id": "GDS4518_5" }, { "dataset_id": "GDS4518", "description": "none", "sample_id": [ "GSM823727", "GSM823728", "GSM823729", "GSM823730", "GSM823731", "GSM823732", "GSM823733", "GSM823734", "GSM823735", "GSM823736", "GSM823737", "GSM823738", "GSM823739", "GSM823740", "GSM823748", "GSM823749", "GSM823750", "GSM823751", "GSM823752", "GSM823753", "GSM823754", "GSM823741", "GSM823742", "GSM823743", "GSM823744", "GSM823745", "GSM823746", "GSM823747" ], "type": "infection", "id": "GDS4518_6" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4518", "version": 1.0, "instances": "48", "variables": 19376, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4518.tab", "compression": "gz" } ], [ [ "GDS4519.tab" ], { "title": "Monozygotic twin pairs discordant for ulcerative colitis: intestinal biopsies", "description": "Analysis of colon mucosal tissue from 10 monozygotic (MZ) twins discordant for ulcerative colitis (UC). Twins (paired samples) were analyzed to obtain mucosal response data independent of genetic variation. Results provide insight into molecular mechanisms underlying UC.", "type": "Expression profiling by array", "pubmed_id": [ "21621540", "22826509" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE22619", "order": "none", "update_date": "Sep 20 2013", "subsets": [ { "dataset_id": "GDS4519", "description": "healthy", "sample_id": [ "GSM560961", "GSM560962", "GSM560963", "GSM560964", "GSM560965", "GSM560966", "GSM560967", "GSM560968", "GSM1012177", "GSM1012179" ], "type": "disease state", "id": "GDS4519_1" }, { "dataset_id": "GDS4519", "description": "ulcerative colitis", "sample_id": [ "GSM560969", "GSM560970", "GSM560971", "GSM560972", "GSM560973", "GSM560974", "GSM560975", "GSM560976", "GSM1012178", "GSM1012180" ], "type": "disease state", "id": "GDS4519_2" }, { "dataset_id": "GDS4519", "description": "twin pair #1 sibling", "sample_id": [ "GSM560961", "GSM560969" ], "type": "individual", "id": "GDS4519_3" }, { "dataset_id": "GDS4519", "description": "twin pair #2 sibling", "sample_id": [ "GSM1012177", "GSM1012178" ], "type": "individual", "id": "GDS4519_4" }, { "dataset_id": "GDS4519", "description": "twin pair #3 sibling", "sample_id": [ "GSM1012179", "GSM1012180" ], "type": "individual", "id": "GDS4519_5" }, { "dataset_id": "GDS4519", "description": "twin pair #4 sibling", "sample_id": [ "GSM560962", "GSM560970" ], "type": "individual", "id": "GDS4519_6" }, { "dataset_id": "GDS4519", "description": "twin pair #6 sibling", "sample_id": [ "GSM560963", "GSM560971" ], "type": "individual", "id": "GDS4519_7" }, { "dataset_id": "GDS4519", "description": "twin pair #7 sibling", "sample_id": [ "GSM560964", "GSM560972" ], "type": "individual", "id": "GDS4519_8" }, { "dataset_id": "GDS4519", "description": "twin pair #8 sibling", "sample_id": [ "GSM560965", "GSM560973" ], "type": "individual", "id": "GDS4519_9" }, { "dataset_id": "GDS4519", "description": "twin pair #9 sibling", "sample_id": [ "GSM560966", "GSM560974" ], "type": "individual", "id": "GDS4519_10" }, { "dataset_id": "GDS4519", "description": "twin pair #10 sibling", "sample_id": [ "GSM560967", "GSM560975" ], "type": "individual", "id": "GDS4519_11" }, { "dataset_id": "GDS4519", "description": "twin pair #12 sibling", "sample_id": [ "GSM560968", "GSM560976" ], "type": "individual", "id": "GDS4519_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4519", "version": 1.0, "instances": "20", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4519.tab", "compression": "gz" } ], [ [ "GDS4520.tab" ], { "title": "Adrenocortical tumor progression model", "description": "Analysis of primary adrenocortical cells transduced with oncogenic Ras and a truncated form of p53. The acquisition order of the genetic alterations results in distinct adrenocortical tumor (ACT) phenotypes. Results provide insight into the molecular mechanisms underlying ACT pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22589739", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE32305", "order": "none", "update_date": "Sep 24 2013", "subsets": [ { "dataset_id": "GDS4520", "description": "Ras + p53", "sample_id": [ "GSM800432", "GSM800433", "GSM800434" ], "type": "protocol", "id": "GDS4520_1" }, { "dataset_id": "GDS4520", "description": "p53 + Ras", "sample_id": [ "GSM800430", "GSM800431" ], "type": "protocol", "id": "GDS4520_2" }, { "dataset_id": "GDS4520", "description": "pLNCX2 + pBabe (Ras+p53 control)", "sample_id": [ "GSM800435", "GSM800436" ], "type": "protocol", "id": "GDS4520_3" }, { "dataset_id": "GDS4520", "description": "pBabe + pLNCX2 (p53+Ras control)", "sample_id": [ "GSM800437", "GSM800438" ], "type": "protocol", "id": "GDS4520_4" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4520", "version": 1.0, "instances": "9", "variables": 19375, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4520.tab", "compression": "gz" } ], [ [ "GDS4521.tab" ], { "title": "Ischemic stroke: peripheral blood mononuclear cells", "description": "Analysis of PBMCs collected from ischemic stroke (IS) patients at least 6 months after the first and only stroke event. Stroke is a complex disease resulting from the interplay of environmental and genetic factors. Results provide insight into the molecular mechanisms underlying IS etiology.", "type": "Expression profiling by array", "pubmed_id": "22453632", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE22255", "order": "none", "update_date": "Sep 24 2013", "subsets": [ { "dataset_id": "GDS4521", "description": "ischemic stroke", "sample_id": [ "GSM554034", "GSM554035", "GSM554036", "GSM554037", "GSM554038", "GSM554039", "GSM554040", "GSM554041", "GSM554042", "GSM554043", "GSM554044", "GSM554045", "GSM554046", "GSM554047", "GSM554048", "GSM554049", "GSM554050", "GSM554051", "GSM554052", "GSM554053" ], "type": "disease state", "id": "GDS4521_1" }, { "dataset_id": "GDS4521", "description": "control", "sample_id": [ "GSM554014", "GSM554015", "GSM554016", "GSM554017", "GSM554018", "GSM554019", "GSM554020", "GSM554021", "GSM554022", "GSM554023", "GSM554024", "GSM554025", "GSM554026", "GSM554027", "GSM554028", "GSM554029", "GSM554030", "GSM554031", "GSM554032", "GSM554033" ], "type": "disease state", "id": "GDS4521_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4521", "version": 1.0, "instances": "40", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4521.tab", "compression": "gz" } ], [ [ "GDS4522.tab" ], { "title": "Schizophrenia: postmortem superior temporal cortex", "description": "Analysis of post-mortem tissue from the superior temporal cortex (Brodmann Area 22, BA22) of schizophrenic patients. The BA22 region mediates the positive pathophysiology of schizophrenia. Results provide insight into molecular mechanisms underlying the positive symptoms of schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "21538462", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "count", "reference_series": "GSE21935", "order": "none", "update_date": "Sep 27 2013", "subsets": [ { "dataset_id": "GDS4522", "description": "schizophrenia", "sample_id": [ "GSM545744", "GSM545745", "GSM545746", "GSM545747", "GSM545748", "GSM545749", "GSM545750", "GSM545751", "GSM545752", "GSM545753", "GSM545754", "GSM545755", "GSM545756", "GSM545757", "GSM545758", "GSM545759", "GSM545760", "GSM545761", "GSM545762", "GSM545763", "GSM545764", "GSM545765", "GSM545766" ], "type": "disease state", "id": "GDS4522_1" }, { "dataset_id": "GDS4522", "description": "control", "sample_id": [ "GSM545725", "GSM545726", "GSM545727", "GSM545728", "GSM545729", "GSM545730", "GSM545731", "GSM545732", "GSM545733", "GSM545734", "GSM545735", "GSM545736", "GSM545737", "GSM545738", "GSM545739", "GSM545740", "GSM545741", "GSM545742", "GSM545743" ], "type": "disease state", "id": "GDS4522_2" }, { "dataset_id": "GDS4522", "description": "female", "sample_id": [ "GSM545725", "GSM545728", "GSM545729", "GSM545730", "GSM545734", "GSM545735", "GSM545738", "GSM545740", "GSM545741", "GSM545744", "GSM545746", "GSM545747", "GSM545750", "GSM545754", "GSM545758", "GSM545762", "GSM545763", "GSM545765", "GSM545766" ], "type": "gender", "id": "GDS4522_3" }, { "dataset_id": "GDS4522", "description": "male", "sample_id": [ "GSM545726", "GSM545727", "GSM545731", "GSM545732", "GSM545733", "GSM545736", "GSM545737", "GSM545739", "GSM545742", "GSM545743", "GSM545745", "GSM545748", "GSM545749", "GSM545751", "GSM545752", "GSM545753", "GSM545755", "GSM545756", "GSM545757", "GSM545759", "GSM545760", "GSM545761", "GSM545764" ], "type": "gender", "id": "GDS4522_4" }, { "dataset_id": "GDS4522", "description": "25 years", "sample_id": [ "GSM545736", "GSM545737" ], "type": "age", "id": "GDS4522_5" }, { "dataset_id": "GDS4522", "description": "28 years", "sample_id": [ "GSM545762" ], "type": "age", "id": "GDS4522_6" }, { "dataset_id": "GDS4522", "description": "38 years", "sample_id": [ "GSM545739" ], "type": "age", "id": "GDS4522_7" }, { "dataset_id": "GDS4522", "description": "41 years", "sample_id": [ "GSM545760" ], "type": "age", "id": "GDS4522_8" }, { "dataset_id": "GDS4522", "description": "44 years", "sample_id": [ "GSM545757" ], "type": "age", "id": "GDS4522_9" }, { "dataset_id": "GDS4522", "description": "46 years", "sample_id": [ "GSM545735" ], "type": "age", "id": "GDS4522_10" }, { "dataset_id": "GDS4522", "description": "53 years", "sample_id": [ "GSM545763" ], "type": "age", "id": "GDS4522_11" }, { "dataset_id": "GDS4522", "description": "54 years", "sample_id": [ "GSM545727", "GSM545741" ], "type": "age", "id": "GDS4522_12" }, { "dataset_id": "GDS4522", "description": "60 years", "sample_id": [ "GSM545732" ], "type": "age", "id": "GDS4522_13" }, { "dataset_id": "GDS4522", "description": "63 years", "sample_id": [ "GSM545753" ], "type": "age", "id": "GDS4522_14" }, { "dataset_id": "GDS4522", "description": "65 years", "sample_id": [ "GSM545754" ], "type": "age", "id": "GDS4522_15" }, { "dataset_id": "GDS4522", "description": "67 years", "sample_id": [ "GSM545734", "GSM545750" ], "type": "age", "id": "GDS4522_16" }, { "dataset_id": "GDS4522", "description": "68 years", "sample_id": [ "GSM545738" ], "type": "age", "id": "GDS4522_17" }, { "dataset_id": "GDS4522", "description": "70 years", "sample_id": [ "GSM545765" ], "type": "age", "id": "GDS4522_18" }, { "dataset_id": "GDS4522", "description": "71 years", "sample_id": [ "GSM545756" ], "type": "age", "id": "GDS4522_19" }, { "dataset_id": "GDS4522", "description": "72 years", "sample_id": [ "GSM545733" ], "type": "age", "id": "GDS4522_20" }, { "dataset_id": "GDS4522", "description": "75 years", "sample_id": [ "GSM545744", "GSM545759" ], "type": "age", "id": "GDS4522_21" }, { "dataset_id": "GDS4522", "description": "76 years", "sample_id": [ "GSM545742" ], "type": "age", "id": "GDS4522_22" }, { "dataset_id": "GDS4522", "description": "77 years", "sample_id": [ "GSM545761" ], "type": "age", "id": "GDS4522_23" }, { "dataset_id": "GDS4522", "description": "78 years", "sample_id": [ "GSM545740" ], "type": "age", "id": "GDS4522_24" }, { "dataset_id": "GDS4522", "description": "79 years", "sample_id": [ "GSM545749", "GSM545755", "GSM545764" ], "type": "age", "id": "GDS4522_25" }, { "dataset_id": "GDS4522", "description": "81 years", "sample_id": [ "GSM545743" ], "type": "age", "id": "GDS4522_26" }, { "dataset_id": "GDS4522", "description": "82 years", "sample_id": [ "GSM545745", "GSM545748", "GSM545752" ], "type": "age", "id": "GDS4522_27" }, { "dataset_id": "GDS4522", "description": "87 years", "sample_id": [ "GSM545725", "GSM545751", "GSM545766" ], "type": "age", "id": "GDS4522_28" }, { "dataset_id": "GDS4522", "description": "88 years", "sample_id": [ "GSM545747" ], "type": "age", "id": "GDS4522_29" }, { "dataset_id": "GDS4522", "description": "89 years", "sample_id": [ "GSM545730", "GSM545746" ], "type": "age", "id": "GDS4522_30" }, { "dataset_id": "GDS4522", "description": "90 years", "sample_id": [ "GSM545729" ], "type": "age", "id": "GDS4522_31" }, { "dataset_id": "GDS4522", "description": "91 years", "sample_id": [ "GSM545726", "GSM545731" ], "type": "age", "id": "GDS4522_32" }, { "dataset_id": "GDS4522", "description": "94 years", "sample_id": [ "GSM545728" ], "type": "age", "id": "GDS4522_33" }, { "dataset_id": "GDS4522", "description": "97 years", "sample_id": [ "GSM545758" ], "type": "age", "id": "GDS4522_34" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4522", "version": 1.0, "instances": "42", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4522.tab", "compression": "gz" } ], [ [ "GDS4523.tab" ], { "title": "Schizophrenia: postmortem anterior prefrontal cortex", "description": "Analysis of post-mortem tissue from the anterior prefrontal cortex (Brodmann Area 10, BA10) of schizophrenic patients. The BA10 region mediates the negative pathophysiology of schizophrenia. Results provide insight into molecular mechanisms underlying the negative symptoms of schizophrenia.", "type": "Expression profiling by array", "pubmed_id": "19255580", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "count", "reference_series": "GSE17612", "order": "none", "update_date": "Nov 05 2013", "subsets": [ { "dataset_id": "GDS4523", "description": "schizophrenia", "sample_id": [ "GSM439813", "GSM439828", "GSM439806", "GSM439800", "GSM439786", "GSM439803", "GSM439784", "GSM439791", "GSM439820", "GSM439824", "GSM439785", "GSM439805", "GSM439815", "GSM439781", "GSM439794", "GSM439778", "GSM439790", "GSM439809", "GSM439823", "GSM439821", "GSM439801", "GSM439795", "GSM439827", "GSM439817", "GSM439798", "GSM439807", "GSM439796", "GSM439811" ], "type": "disease state", "id": "GDS4523_1" }, { "dataset_id": "GDS4523", "description": "control", "sample_id": [ "GSM439783", "GSM439793", "GSM439799", "GSM439825", "GSM439792", "GSM439816", "GSM439812", "GSM439804", "GSM439822", "GSM439810", "GSM439826", "GSM439779", "GSM439814", "GSM439797", "GSM439788", "GSM439782", "GSM439780", "GSM439787", "GSM439808", "GSM439789", "GSM439818", "GSM439819", "GSM439802" ], "type": "disease state", "id": "GDS4523_2" }, { "dataset_id": "GDS4523", "description": "female", "sample_id": [ "GSM439802", "GSM439818", "GSM439808", "GSM439787", "GSM439780", "GSM439826", "GSM439810", "GSM439812", "GSM439792", "GSM439825", "GSM439783", "GSM439811", "GSM439807", "GSM439827", "GSM439795", "GSM439790", "GSM439781", "GSM439805", "GSM439820", "GSM439800" ], "type": "gender", "id": "GDS4523_3" }, { "dataset_id": "GDS4523", "description": "male", "sample_id": [ "GSM439819", "GSM439789", "GSM439782", "GSM439788", "GSM439797", "GSM439814", "GSM439779", "GSM439822", "GSM439804", "GSM439816", "GSM439799", "GSM439793", "GSM439796", "GSM439798", "GSM439817", "GSM439801", "GSM439821", "GSM439823", "GSM439809", "GSM439778", "GSM439794", "GSM439815", "GSM439785", "GSM439824", "GSM439791", "GSM439784", "GSM439803", "GSM439786", "GSM439806", "GSM439828", "GSM439813" ], "type": "gender", "id": "GDS4523_4" }, { "dataset_id": "GDS4523", "description": "25 years", "sample_id": [ "GSM439822", "GSM439804" ], "type": "age", "id": "GDS4523_5" }, { "dataset_id": "GDS4523", "description": "28 years", "sample_id": [ "GSM439800" ], "type": "age", "id": "GDS4523_6" }, { "dataset_id": "GDS4523", "description": "38 years", "sample_id": [ "GSM439816" ], "type": "age", "id": "GDS4523_7" }, { "dataset_id": "GDS4523", "description": "41 years", "sample_id": [ "GSM439784" ], "type": "age", "id": "GDS4523_8" }, { "dataset_id": "GDS4523", "description": "44 years", "sample_id": [ "GSM439824" ], "type": "age", "id": "GDS4523_9" }, { "dataset_id": "GDS4523", "description": "46 years", "sample_id": [ "GSM439810" ], "type": "age", "id": "GDS4523_10" }, { "dataset_id": "GDS4523", "description": "54 years", "sample_id": [ "GSM439789", "GSM439783" ], "type": "age", "id": "GDS4523_11" }, { "dataset_id": "GDS4523", "description": "56 years", "sample_id": [ "GSM439794" ], "type": "age", "id": "GDS4523_12" }, { "dataset_id": "GDS4523", "description": "58 years", "sample_id": [ "GSM439799" ], "type": "age", "id": "GDS4523_13" }, { "dataset_id": "GDS4523", "description": "60 years", "sample_id": [ "GSM439814" ], "type": "age", "id": "GDS4523_14" }, { "dataset_id": "GDS4523", "description": "61 years", "sample_id": [ "GSM439782" ], "type": "age", "id": "GDS4523_15" }, { "dataset_id": "GDS4523", "description": "63 years", "sample_id": [ "GSM439809" ], "type": "age", "id": "GDS4523_16" }, { "dataset_id": "GDS4523", "description": "65 years", "sample_id": [ "GSM439790" ], "type": "age", "id": "GDS4523_17" }, { "dataset_id": "GDS4523", "description": "67 years", "sample_id": [ "GSM439826", "GSM439827" ], "type": "age", "id": "GDS4523_18" }, { "dataset_id": "GDS4523", "description": "68 years", "sample_id": [ "GSM439812" ], "type": "age", "id": "GDS4523_19" }, { "dataset_id": "GDS4523", "description": "71 years", "sample_id": [ "GSM439818", "GSM439785" ], "type": "age", "id": "GDS4523_20" }, { "dataset_id": "GDS4523", "description": "72 years", "sample_id": [ "GSM439779", "GSM439803" ], "type": "age", "id": "GDS4523_21" }, { "dataset_id": "GDS4523", "description": "74 years", "sample_id": [ "GSM439778" ], "type": "age", "id": "GDS4523_22" }, { "dataset_id": "GDS4523", "description": "75 years", "sample_id": [ "GSM439811", "GSM439791" ], "type": "age", "id": "GDS4523_23" }, { "dataset_id": "GDS4523", "description": "77 years", "sample_id": [ "GSM439786", "GSM439828" ], "type": "age", "id": "GDS4523_24" }, { "dataset_id": "GDS4523", "description": "78 years", "sample_id": [ "GSM439792" ], "type": "age", "id": "GDS4523_25" }, { "dataset_id": "GDS4523", "description": "79 years", "sample_id": [ "GSM439815", "GSM439817", "GSM439806" ], "type": "age", "id": "GDS4523_26" }, { "dataset_id": "GDS4523", "description": "81 years", "sample_id": [ "GSM439795" ], "type": "age", "id": "GDS4523_27" }, { "dataset_id": "GDS4523", "description": "82 years", "sample_id": [ "GSM439796", "GSM439798", "GSM439821", "GSM439823", "GSM439805" ], "type": "age", "id": "GDS4523_28" }, { "dataset_id": "GDS4523", "description": "83 years", "sample_id": [ "GSM439813" ], "type": "age", "id": "GDS4523_29" }, { "dataset_id": "GDS4523", "description": "85 years", "sample_id": [ "GSM439781" ], "type": "age", "id": "GDS4523_30" }, { "dataset_id": "GDS4523", "description": "87 years", "sample_id": [ "GSM439801", "GSM439802" ], "type": "age", "id": "GDS4523_31" }, { "dataset_id": "GDS4523", "description": "88 years", "sample_id": [ "GSM439825", "GSM439807" ], "type": "age", "id": "GDS4523_32" }, { "dataset_id": "GDS4523", "description": "89 years", "sample_id": [ "GSM439780" ], "type": "age", "id": "GDS4523_33" }, { "dataset_id": "GDS4523", "description": "90 years", "sample_id": [ "GSM439787", "GSM439793" ], "type": "age", "id": "GDS4523_34" }, { "dataset_id": "GDS4523", "description": "91 years", "sample_id": [ "GSM439819", "GSM439788", "GSM439797" ], "type": "age", "id": "GDS4523_35" }, { "dataset_id": "GDS4523", "description": "94 years", "sample_id": [ "GSM439808" ], "type": "age", "id": "GDS4523_36" }, { "dataset_id": "GDS4523", "description": "97 years", "sample_id": [ "GSM439820" ], "type": "age", "id": "GDS4523_37" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4523", "version": 1.0, "instances": "51", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4523.tab", "compression": "gz" } ], [ [ "GDS4524.tab" ], { "title": "Prenatal stress effect on serotonin transporter-deficient, female offspring: left hippocampus", "description": "Analysis of hippocampi of prenatally-stressed (PS), female offspring of serotonin transporter (5-Htt) +/- parents. Depressive behavior of PS, 5-Htt +/- mice is most pronounced in female offspring. Results provide insight into molecular basis of behavioral effects of gene \u00d7 environment interactions.", "type": "Expression profiling by array", "pubmed_id": "21857948", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE26025", "order": "none", "update_date": "Dec 02 2013", "subsets": [ { "dataset_id": "GDS4524", "description": "wild type", "sample_id": [ "GSM638914", "GSM638915", "GSM638916", "GSM638917", "GSM638918", "GSM638919" ], "type": "genotype/variation", "id": "GDS4524_1" }, { "dataset_id": "GDS4524", "description": "5-HTT +/-", "sample_id": [ "GSM638920", "GSM638921", "GSM638922", "GSM638923", "GSM638924", "GSM638925" ], "type": "genotype/variation", "id": "GDS4524_2" }, { "dataset_id": "GDS4524", "description": "control", "sample_id": [ "GSM638921", "GSM638922", "GSM638914", "GSM638915", "GSM638916", "GSM638920" ], "type": "stress", "id": "GDS4524_3" }, { "dataset_id": "GDS4524", "description": "prenatal stress", "sample_id": [ "GSM638923", "GSM638924", "GSM638925", "GSM638917", "GSM638918", "GSM638919" ], "type": "stress", "id": "GDS4524_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4524", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4524.tab", "compression": "gz" } ], [ [ "GDS4525.tab" ], { "title": "Aortic endothelial cell response to very high wall shear stress", "description": "Analysis of aortic endothelial cells (EC) exposed to high wall shear stress (WSS) for 24hr in an in vitro flow loop system. High WSS often induces expansive remodeling of the artery. Results provide insight into the molecular mechanisms underlying adaptive remodeling under high WSS conditions.", "type": "Expression profiling by array", "pubmed_id": "22173868", "platform": "GPL2112", "platform_organism": "Bos taurus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "24128", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE29376", "order": "none", "update_date": "Dec 02 2013", "subsets": [ { "dataset_id": "GDS4525", "description": "High WSS - 10 Pa", "sample_id": [ "GSM726073", "GSM726074", "GSM726075" ], "type": "stress", "id": "GDS4525_1" }, { "dataset_id": "GDS4525", "description": "Normal WSS - 2 Pa", "sample_id": [ "GSM726076", "GSM726077", "GSM726078" ], "type": "stress", "id": "GDS4525_2" }, { "dataset_id": "GDS4525", "description": "Static control - 0 Pa", "sample_id": [ "GSM726079", "GSM726080", "GSM726081" ], "type": "stress", "id": "GDS4525_3" } ], "taxid": "9913", "genes": 19373, "aggregation_function": "mean", "name": "GDS4525", "version": 1.0, "instances": "9", "variables": 19375, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4525.tab", "compression": "gz" } ], [ [ "GDS4526.tab" ], { "title": "Wfs1 deficiency model of Wolfram syndrome: hypothalamus", "description": "Analysis of hypothalami from Wfs1-knockout, 129SV animals. Wfs1 deletion models Wolfram syndrome (WS), an autosomal recessive disorder characterized by multiple endocrine failure. Results provide insight into the molecular mechanisms underlying WS.", "type": "Expression profiling by array", "pubmed_id": "22028430", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE33372", "order": "none", "update_date": "Dec 02 2013", "subsets": [ { "dataset_id": "GDS4526", "description": "Wfs1 knock-out", "sample_id": [ "GSM825440", "GSM825442", "GSM825444", "GSM825446", "GSM825448", "GSM825432", "GSM825434", "GSM825436", "GSM825438" ], "type": "genotype/variation", "id": "GDS4526_1" }, { "dataset_id": "GDS4526", "description": "wild type", "sample_id": [ "GSM825443", "GSM825445", "GSM825447", "GSM825449", "GSM825433", "GSM825435", "GSM825437", "GSM825439", "GSM825441" ], "type": "genotype/variation", "id": "GDS4526_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4526", "version": 1.0, "instances": "18", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4526.tab", "compression": "gz" } ], [ [ "GDS4527.tab" ], { "title": "Atherosclerosis susceptibility model: macrophages", "description": "Analysis of macrophages from C57BL/6.MOLFc4(51Mb)-Ldlr-/- mice. This model harbors an atherosclerosis susceptibility locus and the region homologous to the human 9p21 locus associated with coronary artery disease. Results provide insight into the molecular basis of increased atherosclerotic risk.", "type": "Expression profiling by array", "pubmed_id": "21868699", "platform": "GPL9734", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "38385", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE24342", "order": "none", "update_date": "Dec 02 2013", "subsets": [ { "dataset_id": "GDS4527", "description": "control", "sample_id": [ "GSM592106", "GSM592107", "GSM592108", "GSM592109", "GSM592110", "GSM592111", "GSM592112", "GSM592113", "GSM592114", "GSM592115" ], "type": "genotype/variation", "id": "GDS4527_1" }, { "dataset_id": "GDS4527", "description": "C57BL/6.MOLFc4(51Mb)-Ldlr-/-", "sample_id": [ "GSM592116", "GSM592117", "GSM592118", "GSM592119", "GSM592120", "GSM592121", "GSM592122", "GSM592123", "GSM592124", "GSM592125" ], "type": "genotype/variation", "id": "GDS4527_2" } ], "taxid": "10090", "genes": 32860, "aggregation_function": "mean", "name": "GDS4527", "version": 1.0, "instances": "20", "variables": 32862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4527.tab", "compression": "gz" } ], [ [ "GDS4528.tab" ], { "title": "KrasG12D pancreatic ductal epithelial cells deficient in PTEN", "description": "Analysis of primary pancreatic ductal epithelial cells (PDECs) established from 6-week-old Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+ animals. Oncogenic KrasG12D and Pten deficiency cooperate to induce pancreatic ductal adenocarcinoma (PDAC). Results provide insight into molecular basis of PDAC development.", "type": "Expression profiling by array", "pubmed_id": "21984975", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE25828", "order": "none", "update_date": "Dec 02 2013", "subsets": [ { "dataset_id": "GDS4528", "description": "Pdx1-Cre;LSL-KrasG12D L/+", "sample_id": [ "GSM634506", "GSM634507", "GSM634508" ], "type": "genotype/variation", "id": "GDS4528_1" }, { "dataset_id": "GDS4528", "description": "Pdx1-Cre;LSL-KrasG12D L/+;Pten L/+", "sample_id": [ "GSM634501", "GSM634502", "GSM634503", "GSM634504", "GSM634505" ], "type": "genotype/variation", "id": "GDS4528_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4528", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4528.tab", "compression": "gz" } ], [ [ "GDS453.tab" ], { "title": "Flower development (ATH1)", "description": "Dissection of flowering pathways using photoperiod floral induction in Landsberg erecta or Columbia plants with combinations of different CONSTANS, FLOWERING LOCUS T and LEAFY alleles. Shoot apex examined at 0, 3, 5 and 7 days after floral induction.", "type": "Expression profiling by array", "pubmed_id": "14573523", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE576", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS453", "description": "Col-0 wild type", "sample_id": [ "GSM8827", "GSM8828", "GSM8829", "GSM8830", "GSM8831", "GSM8832", "GSM8833", "GSM8834" ], "type": "strain", "id": "GDS453_1" }, { "dataset_id": "GDS453", "description": "lfy-12", "sample_id": [ "GSM8835", "GSM8836", "GSM8837", "GSM8838", "GSM8839", "GSM8840", "GSM8841", "GSM8842" ], "type": "strain", "id": "GDS453_2" }, { "dataset_id": "GDS453", "description": "Ler wild type", "sample_id": [ "GSM8843", "GSM8844", "GSM8845", "GSM8846", "GSM8847", "GSM8848", "GSM8849", "GSM8850" ], "type": "strain", "id": "GDS453_3" }, { "dataset_id": "GDS453", "description": "co-2", "sample_id": [ "GSM8851", "GSM8852", "GSM8853", "GSM8854", "GSM8855", "GSM8856", "GSM8857", "GSM8858" ], "type": "strain", "id": "GDS453_4" }, { "dataset_id": "GDS453", "description": "ft-2", "sample_id": [ "GSM8859", "GSM8860", "GSM8861", "GSM8862", "GSM8863", "GSM8864", "GSM8865", "GSM8866" ], "type": "strain", "id": "GDS453_5" }, { "dataset_id": "GDS453", "description": "0 day", "sample_id": [ "GSM8827", "GSM8828", "GSM8843", "GSM8844", "GSM8835", "GSM8836", "GSM8851", "GSM8852", "GSM8859", "GSM8860" ], "type": "time", "id": "GDS453_6" }, { "dataset_id": "GDS453", "description": "3 day", "sample_id": [ "GSM8829", "GSM8830", "GSM8845", "GSM8846", "GSM8837", "GSM8838", "GSM8853", "GSM8854", "GSM8861", "GSM8862" ], "type": "time", "id": "GDS453_7" }, { "dataset_id": "GDS453", "description": "5 day", "sample_id": [ "GSM8831", "GSM8832", "GSM8847", "GSM8848", "GSM8839", "GSM8840", "GSM8855", "GSM8856", "GSM8863", "GSM8864" ], "type": "time", "id": "GDS453_8" }, { "dataset_id": "GDS453", "description": "7 day", "sample_id": [ "GSM8833", "GSM8834", "GSM8849", "GSM8850", "GSM8841", "GSM8842", "GSM8857", "GSM8858", "GSM8865", "GSM8866" ], "type": "time", "id": "GDS453_9" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS453", "version": 1.0, "instances": "40", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS453.tab", "compression": "gz" } ], [ [ "GDS4531.tab" ], { "title": "Melanoma models with contrasting metastatic potential", "description": "Analysis of primary cutaneous melanomas derived from iMet (metastasis-capable) and iHRAS* (non-metastatic) models. Results provide insight into the molecular mechanisms underlying metastatic potential.", "type": "Expression profiling by array", "pubmed_id": "21741599", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE29074", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4531", "description": "none", "sample_id": [ "GSM720426", "GSM720427", "GSM720428", "GSM720429" ], "type": "disease state", "id": "GDS4531_1" }, { "dataset_id": "GDS4531", "description": "melanoma", "sample_id": [ "GSM720430", "GSM720431", "GSM720432", "GSM720433", "GSM720434", "GSM720435", "GSM720436", "GSM720437", "GSM720438", "GSM720439", "GSM720440", "GSM720441" ], "type": "disease state", "id": "GDS4531_2" }, { "dataset_id": "GDS4531", "description": "wild type control", "sample_id": [ "GSM720426", "GSM720427", "GSM720428", "GSM720429" ], "type": "genotype/variation", "id": "GDS4531_3" }, { "dataset_id": "GDS4531", "description": "Tyr-rtTA;Tet-Met;Ink4a/Arf-/-", "sample_id": [ "GSM720430", "GSM720431", "GSM720432", "GSM720433", "GSM720434", "GSM720435" ], "type": "genotype/variation", "id": "GDS4531_4" }, { "dataset_id": "GDS4531", "description": "Tyr-rtTA;Tet-HRASV12G;Ink4a/Arf-/-", "sample_id": [ "GSM720436", "GSM720437", "GSM720438", "GSM720439", "GSM720440", "GSM720441" ], "type": "genotype/variation", "id": "GDS4531_5" }, { "dataset_id": "GDS4531", "description": "melanocytes", "sample_id": [ "GSM720426", "GSM720427", "GSM720428", "GSM720429" ], "type": "cell type", "id": "GDS4531_6" }, { "dataset_id": "GDS4531", "description": "iMET tumor", "sample_id": [ "GSM720430", "GSM720431", "GSM720432", "GSM720433", "GSM720434", "GSM720435" ], "type": "cell type", "id": "GDS4531_7" }, { "dataset_id": "GDS4531", "description": "iHRAS* tumor", "sample_id": [ "GSM720436", "GSM720437", "GSM720438", "GSM720439", "GSM720440", "GSM720441" ], "type": "cell type", "id": "GDS4531_8" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4531", "version": 1.0, "instances": "16", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4531.tab", "compression": "gz" } ], [ [ "GDS4532.tab" ], { "title": "Frontal and parieto-temporal cortical regions of the developing fetal brain", "description": "Analysis of prefrontal/orbito-frontal and parieto-temporal cortex at 17 and 19 gestational weeks. These cortical regions contain presumptive Broca and Wernicke language areas. Results provide insight into molecular mechanisms underlying development of human-specific features of the cerebral cortex.", "type": "Expression profiling by array", "pubmed_id": "21445258", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE21858", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4532", "description": "parieto-temporal cortex", "sample_id": [ "GSM543633", "GSM543632", "GSM543631", "GSM543630" ], "type": "tissue", "id": "GDS4532_1" }, { "dataset_id": "GDS4532", "description": "prefrontal/orbito-frontal cortex", "sample_id": [ "GSM543637", "GSM543636", "GSM543635", "GSM543634" ], "type": "tissue", "id": "GDS4532_2" }, { "dataset_id": "GDS4532", "description": "left side", "sample_id": [ "GSM543633", "GSM543632", "GSM543637", "GSM543636" ], "type": "other", "id": "GDS4532_3" }, { "dataset_id": "GDS4532", "description": "right side", "sample_id": [ "GSM543631", "GSM543630", "GSM543635", "GSM543634" ], "type": "other", "id": "GDS4532_4" }, { "dataset_id": "GDS4532", "description": "17 gestational weeks", "sample_id": [ "GSM543633", "GSM543631", "GSM543637", "GSM543635" ], "type": "development stage", "id": "GDS4532_5" }, { "dataset_id": "GDS4532", "description": "19 gestational weeks", "sample_id": [ "GSM543632", "GSM543630", "GSM543636", "GSM543634" ], "type": "development stage", "id": "GDS4532_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4532", "version": 1.0, "instances": "8", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4532.tab", "compression": "gz" } ], [ [ "GDS4533.tab" ], { "title": "Huntington's disease Hdh knock-out and knock-in embryonic stem cells", "description": "Analysis of embryonic stem cells without Hdh or with knock-in alleles with different Hdh CAG-polyglutamine repeat sizes. CAG-repeat length is inversely correlated with the age of onset of Huntington's disease (HD) symptoms in humans. Results provide insight into molecular mechanisms underlying HD.", "type": "Expression profiling by array", "pubmed_id": "21536587", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE26001", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4533", "description": "control", "sample_id": [ "GSM638129", "GSM638130", "GSM638131", "GSM638132", "GSM638133", "GSM638134" ], "type": "genotype/variation", "id": "GDS4533_1" }, { "dataset_id": "GDS4533", "description": "Hdh knock-out", "sample_id": [ "GSM638135", "GSM638136", "GSM638137", "GSM638138", "GSM638139", "GSM638140" ], "type": "genotype/variation", "id": "GDS4533_2" }, { "dataset_id": "GDS4533", "description": "Hdh knock-in", "sample_id": [ "GSM638141", "GSM638142", "GSM638143", "GSM638144", "GSM638145", "GSM638146", "GSM638147", "GSM638148", "GSM638149", "GSM638150", "GSM638151", "GSM638152" ], "type": "genotype/variation", "id": "GDS4533_3" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: 7/7", "sample_id": [ "GSM638129", "GSM638130", "GSM638131", "GSM638132", "GSM638133", "GSM638134" ], "type": "other", "id": "GDS4533_4" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: null", "sample_id": [ "GSM638135", "GSM638136", "GSM638137", "GSM638138", "GSM638139", "GSM638140" ], "type": "other", "id": "GDS4533_5" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: 7/16", "sample_id": [ "GSM638141", "GSM638142", "GSM638143" ], "type": "other", "id": "GDS4533_6" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: 7/45", "sample_id": [ "GSM638144", "GSM638145" ], "type": "other", "id": "GDS4533_7" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: 7/43", "sample_id": [ "GSM638146" ], "type": "other", "id": "GDS4533_8" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length): 7/85", "sample_id": [ "GSM638147", "GSM638148", "GSM638149" ], "type": "other", "id": "GDS4533_9" }, { "dataset_id": "GDS4533", "description": "hdh CAG repeat length: 7/111", "sample_id": [ "GSM638150", "GSM638151", "GSM638152" ], "type": "other", "id": "GDS4533_10" }, { "dataset_id": "GDS4533", "description": "parental", "sample_id": [ "GSM638129", "GSM638130", "GSM638131", "GSM638132", "GSM638133", "GSM638134" ], "type": "cell line", "id": "GDS4533_11" }, { "dataset_id": "GDS4533", "description": "null", "sample_id": [ "GSM638135", "GSM638136", "GSM638137", "GSM638138", "GSM638139", "GSM638140" ], "type": "cell line", "id": "GDS4533_12" }, { "dataset_id": "GDS4533", "description": "Q20", "sample_id": [ "GSM638141", "GSM638142", "GSM638143" ], "type": "cell line", "id": "GDS4533_13" }, { "dataset_id": "GDS4533", "description": "Q50", "sample_id": [ "GSM638144", "GSM638145", "GSM638146" ], "type": "cell line", "id": "GDS4533_14" }, { "dataset_id": "GDS4533", "description": "Q91", "sample_id": [ "GSM638147", "GSM638148", "GSM638149" ], "type": "cell line", "id": "GDS4533_15" }, { "dataset_id": "GDS4533", "description": "Q111", "sample_id": [ "GSM638150", "GSM638151", "GSM638152" ], "type": "cell line", "id": "GDS4533_16" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4533", "version": 1.0, "instances": "24", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4533.tab", "compression": "gz" } ], [ [ "GDS4534.tab" ], { "title": "HdhQ111 knock-in model of Huntington's disease: striatum and cerebellum", "description": "Analysis of striatum and cerebellum from a HdhQ111/111 knock-in model of Huntington's disease (HD). The 10-week HdhQ111/111 mice exhibit somatic instability in striatum but not in cerebellum. Results provide insight into the molecular basis of tissue-specific somatic instability.", "type": "Expression profiling by array", "pubmed_id": "20302627", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE19780", "order": "none", "update_date": "Jul 30 2013", "subsets": [ { "dataset_id": "GDS4534", "description": "Hdh+/+", "sample_id": [ "GSM229456", "GSM229457", "GSM229458", "GSM229435", "GSM229436", "GSM229437" ], "type": "genotype/variation", "id": "GDS4534_1" }, { "dataset_id": "GDS4534", "description": "HdhQ111/111", "sample_id": [ "GSM229459", "GSM229460", "GSM229461", "GSM229438", "GSM229439", "GSM229440" ], "type": "genotype/variation", "id": "GDS4534_2" }, { "dataset_id": "GDS4534", "description": "cerebellum", "sample_id": [ "GSM229456", "GSM229457", "GSM229458", "GSM229459", "GSM229460", "GSM229461" ], "type": "tissue", "id": "GDS4534_3" }, { "dataset_id": "GDS4534", "description": "striatum", "sample_id": [ "GSM229435", "GSM229436", "GSM229437", "GSM229438", "GSM229439", "GSM229440" ], "type": "tissue", "id": "GDS4534_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4534", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4534.tab", "compression": "gz" } ], [ [ "GDS4535.tab" ], { "title": "Differentiating glioblastoma-initiating cells", "description": "Analysis of cultures of progenitor and 4-day differentiated glioblastoma cells (GICs) derived from surgical specimens. Following induction of differentiation, NF\u03baB is activated in GICs. Results provide insight into molecular mechanisms underlying the control of differentiation of GICs.", "type": "Expression profiling by array", "pubmed_id": "21423202", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE20736", "order": "none", "update_date": "Jul 30 2013", "subsets": [ { "dataset_id": "GDS4535", "description": "differentiated glioblastoma cells", "sample_id": [ "GSM520525", "GSM520523", "GSM520521" ], "type": "cell type", "id": "GDS4535_1" }, { "dataset_id": "GDS4535", "description": "progenitor glioblastoma cells", "sample_id": [ "GSM520526", "GSM520524", "GSM520522" ], "type": "cell type", "id": "GDS4535_2" }, { "dataset_id": "GDS4535", "description": "G48", "sample_id": [ "GSM520521", "GSM520522" ], "type": "specimen", "id": "GDS4535_3" }, { "dataset_id": "GDS4535", "description": "G52", "sample_id": [ "GSM520523", "GSM520524" ], "type": "specimen", "id": "GDS4535_4" }, { "dataset_id": "GDS4535", "description": "G63", "sample_id": [ "GSM520525", "GSM520526" ], "type": "specimen", "id": "GDS4535_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4535", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4535.tab", "compression": "gz" } ], [ [ "GDS4536.tab" ], { "title": "Kaposi's sarcoma associated herpesvirus protein K13 effect on primary effusion lymphoma-derived BCBL1 cells", "description": "Analysis of PEL-derived BCBL1 cells expressing a K13-ER_TAM fusion construct and treated with 4-hydroxytamoxifen (4OHT). KSHV-encoded latent protein vFLIP K13 promotes survival and proliferation of PEL cells. Results provide insight into K13-mediated activation of signaling pathways in PEL.", "type": "Expression profiling by array", "pubmed_id": "22624040", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE37355", "order": "none", "update_date": "Jul 30 2013", "subsets": [ { "dataset_id": "GDS4536", "description": "K13-ER_TAM fusion construct", "sample_id": [ "GSM916571", "GSM916572" ], "type": "genotype/variation", "id": "GDS4536_1" }, { "dataset_id": "GDS4536", "description": "control", "sample_id": [ "GSM916573", "GSM916574" ], "type": "genotype/variation", "id": "GDS4536_2" }, { "dataset_id": "GDS4536", "description": "4OHT", "sample_id": [ "GSM916572", "GSM916574" ], "type": "agent", "id": "GDS4536_3" }, { "dataset_id": "GDS4536", "description": "untreated", "sample_id": [ "GSM916573", "GSM916571" ], "type": "agent", "id": "GDS4536_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4536", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4536.tab", "compression": "gz" } ], [ [ "GDS4537.tab" ], { "title": "CD11c+ dendritic cell depletion effect on Herpes simplex virus-1 infection of cornea", "description": "Analysis of corneas from BALB/cJ hosts injected with diphtheria toxin to deplete CD11c+ dendritic cells (DCs) then subjected to HSV-1 ocular infection. DCs regulate both innate and adaptive immune responses. Results provide insight into the role of CD11c+ DCs in corneal response to HSV-1 infection.", "type": "Expression profiling by array", "pubmed_id": "22210909", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE33991", "order": "none", "update_date": "Jul 30 2013", "subsets": [ { "dataset_id": "GDS4537", "description": "DT injection (CD11c+ DC depletion)", "sample_id": [ "GSM840131", "GSM840132" ], "type": "protocol", "id": "GDS4537_1" }, { "dataset_id": "GDS4537", "description": "control", "sample_id": [ "GSM840129", "GSM840130" ], "type": "protocol", "id": "GDS4537_2" }, { "dataset_id": "GDS4537", "description": "HSV-1", "sample_id": [ "GSM840130", "GSM840132" ], "type": "infection", "id": "GDS4537_3" }, { "dataset_id": "GDS4537", "description": "mock", "sample_id": [ "GSM840129", "GSM840131" ], "type": "infection", "id": "GDS4537_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4537", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4537.tab", "compression": "gz" } ], [ [ "GDS4538.tab" ], { "title": "Central nervous system cell types derived from embryonic stem cell line H9", "description": "Analysis of hESC (H9)-derived CNS cell types: neural rosettes, neurons, astrocytes and immature oligodendrocytes. Results provide insight into molecular profiles of CNS neuronal populations susceptible to herpes simplex virus 1 (HSV-1) infection.", "type": "Expression profiling by array", "pubmed_id": "23103873", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE40593", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4538", "description": "neural rosettes", "sample_id": [ "GSM997558", "GSM997559" ], "type": "cell type", "id": "GDS4538_1" }, { "dataset_id": "GDS4538", "description": "oligodendrocytes", "sample_id": [ "GSM997560", "GSM997561", "GSM997562" ], "type": "cell type", "id": "GDS4538_2" }, { "dataset_id": "GDS4538", "description": "astrocytes", "sample_id": [ "GSM997563", "GSM997564", "GSM997565" ], "type": "cell type", "id": "GDS4538_3" }, { "dataset_id": "GDS4538", "description": "neurons CD44- EGFR-", "sample_id": [ "GSM997566", "GSM997567", "GSM997568" ], "type": "cell type", "id": "GDS4538_4" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS4538", "version": 1.0, "instances": "11", "variables": 39533, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4538.tab", "compression": "gz" } ], [ [ "GDS4539.tab" ], { "title": "TRIF-deficient Herpes simplex encephalitis patient: fibroblast response to interleukin-1\u03b2 and TLR3 agonist poly (I:C)", "description": "Analysis of SV40 skin fibroblasts collected from an HSV1 encephalitis (HSE) patient with TRIF deficiency (homozygous TRIF nonsense mutation) and stimulated with IL-1\u03b2 or poly I:C . TRIF is the sole adaptor protein for TLR3. Results provide insight into the role of the TLR3 pathway in HSE.", "type": "Expression profiling by array", "pubmed_id": "22105173", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE32390", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4539", "description": "Herpes simplex encephalitis", "sample_id": [ "GSM801672", "GSM801673", "GSM801682", "GSM801668", "GSM801675", "GSM801683", "GSM801679", "GSM801676", "GSM801671" ], "type": "disease state", "id": "GDS4539_1" }, { "dataset_id": "GDS4539", "description": "healthy control", "sample_id": [ "GSM801669", "GSM801681", "GSM801674", "GSM801678", "GSM801680", "GSM801684", "GSM801670", "GSM801677", "GSM801667" ], "type": "disease state", "id": "GDS4539_2" }, { "dataset_id": "GDS4539", "description": "TRIF -/-", "sample_id": [ "GSM801668", "GSM801675", "GSM801683" ], "type": "genotype/variation", "id": "GDS4539_3" }, { "dataset_id": "GDS4539", "description": "TLR3 -/-", "sample_id": [ "GSM801679", "GSM801676", "GSM801671" ], "type": "genotype/variation", "id": "GDS4539_4" }, { "dataset_id": "GDS4539", "description": "MYD88 -/-", "sample_id": [ "GSM801672", "GSM801673", "GSM801682" ], "type": "genotype/variation", "id": "GDS4539_5" }, { "dataset_id": "GDS4539", "description": "control", "sample_id": [ "GSM801669", "GSM801681", "GSM801674", "GSM801678", "GSM801680", "GSM801684", "GSM801670", "GSM801677", "GSM801667" ], "type": "genotype/variation", "id": "GDS4539_6" }, { "dataset_id": "GDS4539", "description": "dsRNA analog poly (I:C)", "sample_id": [ "GSM801667", "GSM801674", "GSM801679", "GSM801682", "GSM801683", "GSM801684" ], "type": "agent", "id": "GDS4539_7" }, { "dataset_id": "GDS4539", "description": "interleukin-1\u03b2", "sample_id": [ "GSM801668", "GSM801669", "GSM801670", "GSM801672", "GSM801676", "GSM801678" ], "type": "agent", "id": "GDS4539_8" }, { "dataset_id": "GDS4539", "description": "control", "sample_id": [ "GSM801671", "GSM801673", "GSM801675", "GSM801677", "GSM801680", "GSM801681" ], "type": "agent", "id": "GDS4539_9" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4539", "version": 1.0, "instances": "18", "variables": 37610, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4539.tab", "compression": "gz" } ], [ [ "GDS4540.tab" ], { "title": "TRIF-deficient Herpes simplex encephalitis patient: peripheral blood mononuclear cell response to TLR agonists LPS and R-848", "description": "Analysis of PBMCs collected from an HSV1 encephalitis (HSE) patient with TRIF deficiency (homozygous TRIF nonsense mutation) and stimulated with LPS or resiquimod hydrochloride R-848. TRIF is the sole adaptor protein for TLR3. Results provide insight into the role of the TLR3 pathway in HSE.", "type": "Expression profiling by array", "pubmed_id": "22105173", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE32390", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4540", "description": "Herpes simplex encephalitis", "sample_id": [ "GSM801686", "GSM801692", "GSM801689", "GSM801687", "GSM801693", "GSM801690" ], "type": "disease state", "id": "GDS4540_1" }, { "dataset_id": "GDS4540", "description": "healthy control", "sample_id": [ "GSM801691", "GSM801688", "GSM801685" ], "type": "disease state", "id": "GDS4540_2" }, { "dataset_id": "GDS4540", "description": "TRIF -/-", "sample_id": [ "GSM801686", "GSM801692", "GSM801689" ], "type": "genotype/variation", "id": "GDS4540_3" }, { "dataset_id": "GDS4540", "description": "MYD88 -/-", "sample_id": [ "GSM801687", "GSM801693", "GSM801690" ], "type": "genotype/variation", "id": "GDS4540_4" }, { "dataset_id": "GDS4540", "description": "control", "sample_id": [ "GSM801685", "GSM801691", "GSM801688" ], "type": "genotype/variation", "id": "GDS4540_5" }, { "dataset_id": "GDS4540", "description": "LPS 10ng/ml", "sample_id": [ "GSM801686", "GSM801687", "GSM801685" ], "type": "agent", "id": "GDS4540_6" }, { "dataset_id": "GDS4540", "description": "R-848 3ug/ml", "sample_id": [ "GSM801692", "GSM801693", "GSM801691" ], "type": "agent", "id": "GDS4540_7" }, { "dataset_id": "GDS4540", "description": "non stimulated", "sample_id": [ "GSM801689", "GSM801690", "GSM801688" ], "type": "agent", "id": "GDS4540_8" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4540", "version": 1.0, "instances": "9", "variables": 37610, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4540.tab", "compression": "gz" } ], [ [ "GDS4541.tab" ], { "title": "Hungington's disease: whole blood", "description": "Analysis of whole blood from Huntington\u2019s disease (HD) patients and age- and sex-matched healthy controls. To date, a robust and clinically useful blood test for HD has not been developed. Results provide insight into blood biomarkers for HD activity.", "type": "Expression profiling by array", "pubmed_id": "21969577", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE24250", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4541", "description": "control", "sample_id": [ "GSM596529", "GSM596536", "GSM596537", "GSM596538", "GSM596540", "GSM596542" ], "type": "disease state", "id": "GDS4541_1" }, { "dataset_id": "GDS4541", "description": "Huntington's disease", "sample_id": [ "GSM596541", "GSM596539", "GSM596530", "GSM596531", "GSM596532", "GSM596533", "GSM596534", "GSM596535" ], "type": "disease state", "id": "GDS4541_2" }, { "dataset_id": "GDS4541", "description": "female", "sample_id": [ "GSM596529", "GSM596530", "GSM596531", "GSM596532", "GSM596533", "GSM596535", "GSM596536", "GSM596539", "GSM596540", "GSM596541" ], "type": "gender", "id": "GDS4541_3" }, { "dataset_id": "GDS4541", "description": "male", "sample_id": [ "GSM596534", "GSM596537", "GSM596538", "GSM596542" ], "type": "gender", "id": "GDS4541_4" }, { "dataset_id": "GDS4541", "description": "32 years", "sample_id": [ "GSM596542" ], "type": "age", "id": "GDS4541_5" }, { "dataset_id": "GDS4541", "description": "37 years", "sample_id": [ "GSM596540" ], "type": "age", "id": "GDS4541_6" }, { "dataset_id": "GDS4541", "description": "41 years", "sample_id": [ "GSM596536" ], "type": "age", "id": "GDS4541_7" }, { "dataset_id": "GDS4541", "description": "48 years", "sample_id": [ "GSM596534", "GSM596541" ], "type": "age", "id": "GDS4541_8" }, { "dataset_id": "GDS4541", "description": "49 years", "sample_id": [ "GSM596529" ], "type": "age", "id": "GDS4541_9" }, { "dataset_id": "GDS4541", "description": "50 years", "sample_id": [ "GSM596530" ], "type": "age", "id": "GDS4541_10" }, { "dataset_id": "GDS4541", "description": "55 years", "sample_id": [ "GSM596539" ], "type": "age", "id": "GDS4541_11" }, { "dataset_id": "GDS4541", "description": "57 years", "sample_id": [ "GSM596537" ], "type": "age", "id": "GDS4541_12" }, { "dataset_id": "GDS4541", "description": "58 years", "sample_id": [ "GSM596535", "GSM596538" ], "type": "age", "id": "GDS4541_13" }, { "dataset_id": "GDS4541", "description": "59 years", "sample_id": [ "GSM596532" ], "type": "age", "id": "GDS4541_14" }, { "dataset_id": "GDS4541", "description": "62 years", "sample_id": [ "GSM596531" ], "type": "age", "id": "GDS4541_15" }, { "dataset_id": "GDS4541", "description": "63 years", "sample_id": [ "GSM596533" ], "type": "age", "id": "GDS4541_16" }, { "dataset_id": "GDS4541", "description": "820B", "sample_id": [ "GSM596529" ], "type": "individual", "id": "GDS4541_17" }, { "dataset_id": "GDS4541", "description": "820C", "sample_id": [ "GSM596530" ], "type": "individual", "id": "GDS4541_18" }, { "dataset_id": "GDS4541", "description": "820D", "sample_id": [ "GSM596531" ], "type": "individual", "id": "GDS4541_19" }, { "dataset_id": "GDS4541", "description": "820E", "sample_id": [ "GSM596532" ], "type": "individual", "id": "GDS4541_20" }, { "dataset_id": "GDS4541", "description": "820F", "sample_id": [ "GSM596533" ], "type": "individual", "id": "GDS4541_21" }, { "dataset_id": "GDS4541", "description": "874A", "sample_id": [ "GSM596534" ], "type": "individual", "id": "GDS4541_22" }, { "dataset_id": "GDS4541", "description": "874B", "sample_id": [ "GSM596535" ], "type": "individual", "id": "GDS4541_23" }, { "dataset_id": "GDS4541", "description": "874C", "sample_id": [ "GSM596536" ], "type": "individual", "id": "GDS4541_24" }, { "dataset_id": "GDS4541", "description": "874D", "sample_id": [ "GSM596537" ], "type": "individual", "id": "GDS4541_25" }, { "dataset_id": "GDS4541", "description": "874E", "sample_id": [ "GSM596538" ], "type": "individual", "id": "GDS4541_26" }, { "dataset_id": "GDS4541", "description": "874F", "sample_id": [ "GSM596539" ], "type": "individual", "id": "GDS4541_27" }, { "dataset_id": "GDS4541", "description": "874G", "sample_id": [ "GSM596540" ], "type": "individual", "id": "GDS4541_28" }, { "dataset_id": "GDS4541", "description": "874H", "sample_id": [ "GSM596541" ], "type": "individual", "id": "GDS4541_29" }, { "dataset_id": "GDS4541", "description": "894B", "sample_id": [ "GSM596542" ], "type": "individual", "id": "GDS4541_30" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4541", "version": 1.0, "instances": "14", "variables": 14068, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4541.tab", "compression": "gz" } ], [ [ "GDS4542.tab" ], { "title": "Chronic suppression of phosphodiesterase 10A effect on striatum and hippocampus", "description": "Analysis of C57BL6 striatum and hippocampus following chronic inhibition of PDE10A activity by dosing with PDE10A inhibitor TP-10 or by PDE10A knockout. PDE10A transcripts are significantly downregulated in Huntington's disease (HD) brain. Results provide insight into the molecular basis of HD.", "type": "Expression profiling by array", "pubmed_id": "20923867", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE40377", "order": "none", "update_date": "Aug 07 2013", "subsets": [ { "dataset_id": "GDS4542", "description": "striatum", "sample_id": [ "GSM992502", "GSM992503", "GSM992504", "GSM992505", "GSM992506", "GSM992507", "GSM992508", "GSM992509", "GSM992510", "GSM992511", "GSM992512", "GSM992513", "GSM992514", "GSM992515", "GSM992516", "GSM992517", "GSM992518", "GSM992519", "GSM992520", "GSM992521" ], "type": "tissue", "id": "GDS4542_1" }, { "dataset_id": "GDS4542", "description": "hippocampus", "sample_id": [ "GSM992480", "GSM992481", "GSM992482", "GSM992483", "GSM992484", "GSM992485", "GSM992486", "GSM992487", "GSM992488", "GSM992489", "GSM992490", "GSM992491", "GSM992492", "GSM992493", "GSM992494", "GSM992495", "GSM992496", "GSM992497", "GSM992498", "GSM992499", "GSM992500", "GSM992501" ], "type": "tissue", "id": "GDS4542_2" }, { "dataset_id": "GDS4542", "description": "PDE10A knock out", "sample_id": [ "GSM992485", "GSM992486", "GSM992487", "GSM992488", "GSM992489", "GSM992480", "GSM992481", "GSM992482", "GSM992483", "GSM992484", "GSM992507", "GSM992508", "GSM992509", "GSM992510", "GSM992502", "GSM992503", "GSM992504", "GSM992505", "GSM992506" ], "type": "genotype/variation", "id": "GDS4542_3" }, { "dataset_id": "GDS4542", "description": "wild type", "sample_id": [ "GSM992496", "GSM992497", "GSM992498", "GSM992499", "GSM992500", "GSM992501", "GSM992490", "GSM992491", "GSM992492", "GSM992493", "GSM992494", "GSM992495", "GSM992516", "GSM992517", "GSM992518", "GSM992519", "GSM992520", "GSM992521", "GSM992511", "GSM992512", "GSM992513", "GSM992514", "GSM992515" ], "type": "genotype/variation", "id": "GDS4542_4" }, { "dataset_id": "GDS4542", "description": "PDE10A inhibitor", "sample_id": [ "GSM992485", "GSM992486", "GSM992487", "GSM992488", "GSM992489", "GSM992507", "GSM992508", "GSM992509", "GSM992510", "GSM992496", "GSM992497", "GSM992498", "GSM992499", "GSM992500", "GSM992501", "GSM992516", "GSM992517", "GSM992518", "GSM992519", "GSM992520", "GSM992521" ], "type": "agent", "id": "GDS4542_5" }, { "dataset_id": "GDS4542", "description": "control", "sample_id": [ "GSM992480", "GSM992481", "GSM992482", "GSM992483", "GSM992484", "GSM992502", "GSM992503", "GSM992504", "GSM992505", "GSM992506", "GSM992490", "GSM992491", "GSM992492", "GSM992493", "GSM992494", "GSM992495", "GSM992511", "GSM992512", "GSM992513", "GSM992514", "GSM992515" ], "type": "agent", "id": "GDS4542_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4542", "version": 1.0, "instances": "42", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4542.tab", "compression": "gz" } ], [ [ "GDS4543.tab" ], { "title": "Pulmonary vascular microendothelial cell response to mutations in type 2 receptor for the bone morphogenetic protein signaling pathway, BMPR2", "description": "Analysis of PMVECs cultured from triple transgenics carrying immortomouse gene, a transactivator, and either control, Bmpr2delx4+ or Bmpr2R899X mutation. Hereditary pulmonary arterial hypertension is often associated with BMPR2 mutations. Results provide insight into role of Bmpr2 in endothelium.", "type": "Expression profiling by array", "pubmed_id": "21696628", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE28043", "order": "none", "update_date": "Aug 29 2013", "subsets": [ { "dataset_id": "GDS4543", "description": "control", "sample_id": [ "GSM693825", "GSM693826" ], "type": "genotype/variation", "id": "GDS4543_1" }, { "dataset_id": "GDS4543", "description": "Bmpr2-Delx4 mutation", "sample_id": [ "GSM693827", "GSM693828" ], "type": "genotype/variation", "id": "GDS4543_2" }, { "dataset_id": "GDS4543", "description": "Bmpr2-R899X mutation", "sample_id": [ "GSM693829", "GSM693830" ], "type": "genotype/variation", "id": "GDS4543_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4543", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4543.tab", "compression": "gz" } ], [ [ "GDS4544.tab" ], { "title": "G-protein-coupled receptor kinase 2 inhibition effect on HEK cells in vitro and in vivo", "description": "Analysis of HEK cells expressing dominant-negative GRK2-K220R. HEK cells were cultured, or expanded in NOD.Scid mice, or re-cultured after NOD.Scid expansion. GRK2-K220R enhances growth of NOD.Scid HEK cells but not cultured HEK cells. Results provide insight into basis of growth control by GRK2.", "type": "Expression profiling by array", "pubmed_id": "23362259", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE42771", "order": "none", "update_date": "Aug 30 2013", "subsets": [ { "dataset_id": "GDS4544", "description": "cultured", "sample_id": [ "GSM1049713", "GSM1049712", "GSM1049715", "GSM1049714" ], "type": "protocol", "id": "GDS4544_1" }, { "dataset_id": "GDS4544", "description": "NOD.Scid mouse-expanded", "sample_id": [ "GSM1049709", "GSM1049708", "GSM1049711", "GSM1049710" ], "type": "protocol", "id": "GDS4544_2" }, { "dataset_id": "GDS4544", "description": "re-cultured after NOD.Scid expansion", "sample_id": [ "GSM1049719", "GSM1049718", "GSM1049717", "GSM1049716" ], "type": "protocol", "id": "GDS4544_3" }, { "dataset_id": "GDS4544", "description": "GRK2", "sample_id": [ "GSM1049713", "GSM1049712", "GSM1049709", "GSM1049708", "GSM1049717", "GSM1049716" ], "type": "genotype/variation", "id": "GDS4544_4" }, { "dataset_id": "GDS4544", "description": "GRK2-K220R", "sample_id": [ "GSM1049711", "GSM1049710", "GSM1049719", "GSM1049718", "GSM1049715", "GSM1049714" ], "type": "genotype/variation", "id": "GDS4544_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4544", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4544.tab", "compression": "gz" } ], [ [ "GDS4545.tab" ], { "title": "Cardiac right ventricle hypertrophy model", "description": "Analysis of right ventricle (RV) from C57BL/6 males subjected to hemoclip installation around the pulmonary artery (PA) for up to 6 weeks. PA clipping induces RV hypertrophy (RVH) while avoiding detrimental RV pressure overload. Results provide insight into the molecular basis of RV remodeling.", "type": "Expression profiling by array", "pubmed_id": "20673770", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE30428", "order": "none", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4545", "description": "sham", "sample_id": [ "GSM754739", "GSM754740", "GSM754731", "GSM754732" ], "type": "protocol", "id": "GDS4545_1" }, { "dataset_id": "GDS4545", "description": "pulmonary artery clipping", "sample_id": [ "GSM754737", "GSM754738", "GSM754735", "GSM754736", "GSM754733", "GSM754734" ], "type": "protocol", "id": "GDS4545_2" }, { "dataset_id": "GDS4545", "description": "transaortic constriction", "sample_id": [ "GSM754729", "GSM754730" ], "type": "protocol", "id": "GDS4545_3" }, { "dataset_id": "GDS4545", "description": "right ventricle", "sample_id": [ "GSM754740", "GSM754739", "GSM754738", "GSM754737", "GSM754736", "GSM754735", "GSM754734", "GSM754733" ], "type": "tissue", "id": "GDS4545_4" }, { "dataset_id": "GDS4545", "description": "left ventricle", "sample_id": [ "GSM754732", "GSM754731", "GSM754730", "GSM754729" ], "type": "tissue", "id": "GDS4545_5" }, { "dataset_id": "GDS4545", "description": "week 1", "sample_id": [ "GSM754734", "GSM754733" ], "type": "time", "id": "GDS4545_6" }, { "dataset_id": "GDS4545", "description": "week 3", "sample_id": [ "GSM754740", "GSM754739", "GSM754732", "GSM754731", "GSM754736", "GSM754735", "GSM754730", "GSM754729" ], "type": "time", "id": "GDS4545_7" }, { "dataset_id": "GDS4545", "description": "week 6", "sample_id": [ "GSM754738", "GSM754737" ], "type": "time", "id": "GDS4545_8" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4545", "version": 1.0, "instances": "12", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4545.tab", "compression": "gz" } ], [ [ "GDS4546.tab" ], { "title": "Metabolic stress effect on MCAD-deficient mutants: liver", "description": "Analysis of liver from medium-chain acyl-coenzyme A dehydrogenase-deficient (MCAD-/-) adult males during fasting and during an LPS-induced acute phase response. Results provide insight into the molecular basis of disturbed hepatic carbohydrate management during metabolic stress in MCAD-/- mutants.", "type": "Expression profiling by array", "pubmed_id": "18459129", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE37546", "order": "none", "update_date": "Sep 18 2013", "subsets": [ { "dataset_id": "GDS4546", "description": "fasted", "sample_id": [ "GSM921437", "GSM921438", "GSM921439", "GSM921440", "GSM921441", "GSM921447", "GSM921448", "GSM921449", "GSM921450", "GSM921451" ], "type": "stress", "id": "GDS4546_1" }, { "dataset_id": "GDS4546", "description": "fasted + LPS", "sample_id": [ "GSM921442", "GSM921443", "GSM921444", "GSM921445", "GSM921446", "GSM921452", "GSM921453", "GSM921454", "GSM921455", "GSM921456" ], "type": "stress", "id": "GDS4546_2" }, { "dataset_id": "GDS4546", "description": "wild type", "sample_id": [ "GSM921437", "GSM921438", "GSM921439", "GSM921440", "GSM921441", "GSM921442", "GSM921443", "GSM921444", "GSM921445", "GSM921446" ], "type": "genotype/variation", "id": "GDS4546_3" }, { "dataset_id": "GDS4546", "description": "MCAD-/- mutant", "sample_id": [ "GSM921447", "GSM921448", "GSM921449", "GSM921450", "GSM921451", "GSM921452", "GSM921453", "GSM921454", "GSM921455", "GSM921456" ], "type": "genotype/variation", "id": "GDS4546_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4546", "version": 1.0, "instances": "20", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4546.tab", "compression": "gz" } ], [ [ "GDS4547.tab" ], { "title": "Effect of ischemia and tissue procurement conditions on resected renal clear cell carcinoma", "description": "Analysis of ten renal tumors that were resected then immediately frozen or stored at 4\u00b0C, 22\u00b0C, 37\u00b0C for up to 240 minutes. Results provide insight into the impact of tissue acquisition method on tumor gene expression profiles.", "type": "Expression profiling by array", "pubmed_id": "23136194", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "140", "value_type": "transformed count", "reference_series": "GSE41137", "order": "none", "update_date": "Sep 18 2013", "subsets": [ { "dataset_id": "GDS4547", "description": "Snap frozen", "sample_id": [ "GSM1009062", "GSM1009076", "GSM1009090", "GSM1009104", "GSM1009118", "GSM1009132", "GSM1009146", "GSM1009160", "GSM1009174", "GSM1009188" ], "type": "temperature", "id": "GDS4547_1" }, { "dataset_id": "GDS4547", "description": "4C", "sample_id": [ "GSM1009063", "GSM1009064", "GSM1009065", "GSM1009066", "GSM1009067", "GSM1009077", "GSM1009078", "GSM1009079", "GSM1009080", "GSM1009081", "GSM1009091", "GSM1009092", "GSM1009093", "GSM1009094", "GSM1009095", "GSM1009105", "GSM1009106", "GSM1009107", "GSM1009108", "GSM1009109", "GSM1009119", "GSM1009120", "GSM1009121", "GSM1009122", "GSM1009123", "GSM1009133", "GSM1009134", "GSM1009135", "GSM1009136", "GSM1009137", "GSM1009147", "GSM1009148", "GSM1009149", "GSM1009150", "GSM1009151", "GSM1009161", "GSM1009162", "GSM1009163", "GSM1009164", "GSM1009165", "GSM1009175", "GSM1009176", "GSM1009177", "GSM1009178", "GSM1009179", "GSM1009189", "GSM1009190", "GSM1009191", "GSM1009192", "GSM1009193" ], "type": "temperature", "id": "GDS4547_2" }, { "dataset_id": "GDS4547", "description": "22C", "sample_id": [ "GSM1009068", "GSM1009069", "GSM1009070", "GSM1009071", "GSM1009082", "GSM1009083", "GSM1009084", "GSM1009085", "GSM1009096", "GSM1009097", "GSM1009098", "GSM1009099", "GSM1009110", "GSM1009111", "GSM1009112", "GSM1009113", "GSM1009124", "GSM1009125", "GSM1009126", "GSM1009127", "GSM1009138", "GSM1009139", "GSM1009140", "GSM1009141", "GSM1009152", "GSM1009153", "GSM1009154", "GSM1009155", "GSM1009167", "GSM1009168", "GSM1009169", "GSM1009180", "GSM1009181", "GSM1009182", "GSM1009183", "GSM1009194", "GSM1009195", "GSM1009196", "GSM1009197", "GSM1009166" ], "type": "temperature", "id": "GDS4547_3" }, { "dataset_id": "GDS4547", "description": "37C", "sample_id": [ "GSM1009072", "GSM1009073", "GSM1009074", "GSM1009075", "GSM1009086", "GSM1009087", "GSM1009088", "GSM1009089", "GSM1009100", "GSM1009101", "GSM1009102", "GSM1009103", "GSM1009114", "GSM1009115", "GSM1009116", "GSM1009117", "GSM1009128", "GSM1009129", "GSM1009130", "GSM1009131", "GSM1009142", "GSM1009143", "GSM1009144", "GSM1009145", "GSM1009156", "GSM1009157", "GSM1009158", "GSM1009159", "GSM1009170", "GSM1009171", "GSM1009172", "GSM1009173", "GSM1009184", "GSM1009185", "GSM1009186", "GSM1009187", "GSM1009198", "GSM1009199", "GSM1009200", "GSM1009201" ], "type": "temperature", "id": "GDS4547_4" }, { "dataset_id": "GDS4547", "description": "control", "sample_id": [ "GSM1009062", "GSM1009076", "GSM1009090", "GSM1009104", "GSM1009118", "GSM1009132", "GSM1009146", "GSM1009160", "GSM1009174", "GSM1009188" ], "type": "time", "id": "GDS4547_5" }, { "dataset_id": "GDS4547", "description": "5 minutes", "sample_id": [ "GSM1009063", "GSM1009068", "GSM1009072", "GSM1009077", "GSM1009082", "GSM1009086", "GSM1009091", "GSM1009096", "GSM1009100", "GSM1009105", "GSM1009110", "GSM1009114", "GSM1009119", "GSM1009124", "GSM1009128", "GSM1009133", "GSM1009138", "GSM1009142", "GSM1009147", "GSM1009152", "GSM1009156", "GSM1009161", "GSM1009166", "GSM1009170", "GSM1009175", "GSM1009180", "GSM1009184", "GSM1009189", "GSM1009194", "GSM1009198" ], "type": "time", "id": "GDS4547_6" }, { "dataset_id": "GDS4547", "description": "30 minutes", "sample_id": [ "GSM1009064", "GSM1009069", "GSM1009073", "GSM1009078", "GSM1009083", "GSM1009087", "GSM1009092", "GSM1009097", "GSM1009101", "GSM1009106", "GSM1009111", "GSM1009115", "GSM1009120", "GSM1009125", "GSM1009129", "GSM1009134", "GSM1009139", "GSM1009143", "GSM1009148", "GSM1009153", "GSM1009157", "GSM1009162", "GSM1009167", "GSM1009171", "GSM1009176", "GSM1009181", "GSM1009185", "GSM1009190", "GSM1009195", "GSM1009199" ], "type": "time", "id": "GDS4547_7" }, { "dataset_id": "GDS4547", "description": "60 minutes", "sample_id": [ "GSM1009065", "GSM1009070", "GSM1009074", "GSM1009079", "GSM1009084", "GSM1009088", "GSM1009093", "GSM1009098", "GSM1009102", "GSM1009107", "GSM1009112", "GSM1009116", "GSM1009121", "GSM1009126", "GSM1009130", "GSM1009135", "GSM1009140", "GSM1009144", "GSM1009149", "GSM1009154", "GSM1009158", "GSM1009163", "GSM1009168", "GSM1009172", "GSM1009177", "GSM1009182", "GSM1009186", "GSM1009191", "GSM1009196", "GSM1009200" ], "type": "time", "id": "GDS4547_8" }, { "dataset_id": "GDS4547", "description": "120 minutes", "sample_id": [ "GSM1009066", "GSM1009071", "GSM1009075", "GSM1009080", "GSM1009085", "GSM1009089", "GSM1009094", "GSM1009099", "GSM1009103", "GSM1009108", "GSM1009113", "GSM1009117", "GSM1009122", "GSM1009127", "GSM1009131", "GSM1009136", "GSM1009141", "GSM1009145", "GSM1009150", "GSM1009155", "GSM1009159", "GSM1009164", "GSM1009169", "GSM1009173", "GSM1009178", "GSM1009183", "GSM1009187", "GSM1009192", "GSM1009197", "GSM1009201" ], "type": "time", "id": "GDS4547_9" }, { "dataset_id": "GDS4547", "description": "240 minutes", "sample_id": [ "GSM1009067", "GSM1009081", "GSM1009095", "GSM1009123", "GSM1009137", "GSM1009151", "GSM1009165", "GSM1009179", "GSM1009193", "GSM1009109" ], "type": "time", "id": "GDS4547_10" }, { "dataset_id": "GDS4547", "description": "tumor 1", "sample_id": [ "GSM1009062", "GSM1009063", "GSM1009064", "GSM1009065", "GSM1009066", "GSM1009067", "GSM1009068", "GSM1009069", "GSM1009070", "GSM1009071", "GSM1009072", "GSM1009073", "GSM1009074", "GSM1009075" ], "type": "specimen", "id": "GDS4547_11" }, { "dataset_id": "GDS4547", "description": "tumor 2", "sample_id": [ "GSM1009076", "GSM1009077", "GSM1009078", "GSM1009079", "GSM1009080", "GSM1009081", "GSM1009082", "GSM1009083", "GSM1009084", "GSM1009085", "GSM1009086", "GSM1009087", "GSM1009088", "GSM1009089" ], "type": "specimen", "id": "GDS4547_12" }, { "dataset_id": "GDS4547", "description": "tumor 3", "sample_id": [ "GSM1009090", "GSM1009091", "GSM1009092", "GSM1009093", "GSM1009094", "GSM1009095", "GSM1009096", "GSM1009097", "GSM1009098", "GSM1009099", "GSM1009100", "GSM1009101", "GSM1009102", "GSM1009103" ], "type": "specimen", "id": "GDS4547_13" }, { "dataset_id": "GDS4547", "description": "tumor 4", "sample_id": [ "GSM1009104", "GSM1009105", "GSM1009106", "GSM1009107", "GSM1009108", "GSM1009109", "GSM1009110", "GSM1009111", "GSM1009112", "GSM1009113", "GSM1009114", "GSM1009115", "GSM1009116", "GSM1009117" ], "type": "specimen", "id": "GDS4547_14" }, { "dataset_id": "GDS4547", "description": "tumor 5", "sample_id": [ "GSM1009118", "GSM1009119", "GSM1009120", "GSM1009121", "GSM1009122", "GSM1009123", "GSM1009124", "GSM1009125", "GSM1009126", "GSM1009127", "GSM1009128", "GSM1009129", "GSM1009130", "GSM1009131" ], "type": "specimen", "id": "GDS4547_15" }, { "dataset_id": "GDS4547", "description": "tumor 6", "sample_id": [ "GSM1009132", "GSM1009133", "GSM1009134", "GSM1009135", "GSM1009136", "GSM1009137", "GSM1009138", "GSM1009139", "GSM1009140", "GSM1009141", "GSM1009142", "GSM1009143", "GSM1009144", "GSM1009145" ], "type": "specimen", "id": "GDS4547_16" }, { "dataset_id": "GDS4547", "description": "tumor 7", "sample_id": [ "GSM1009146", "GSM1009147", "GSM1009148", "GSM1009149", "GSM1009150", "GSM1009151", "GSM1009152", "GSM1009153", "GSM1009154", "GSM1009155", "GSM1009156", "GSM1009157", "GSM1009158", "GSM1009159" ], "type": "specimen", "id": "GDS4547_17" }, { "dataset_id": "GDS4547", "description": "tumor 8", "sample_id": [ "GSM1009160", "GSM1009161", "GSM1009162", "GSM1009163", "GSM1009164", "GSM1009165", "GSM1009166", "GSM1009167", "GSM1009168", "GSM1009169", "GSM1009170", "GSM1009171", "GSM1009172", "GSM1009173" ], "type": "specimen", "id": "GDS4547_18" }, { "dataset_id": "GDS4547", "description": "tumor 9", "sample_id": [ "GSM1009174", "GSM1009175", "GSM1009176", "GSM1009177", "GSM1009178", "GSM1009179", "GSM1009180", "GSM1009181", "GSM1009182", "GSM1009183", "GSM1009184", "GSM1009185", "GSM1009186", "GSM1009187" ], "type": "specimen", "id": "GDS4547_19" }, { "dataset_id": "GDS4547", "description": "tumor 10", "sample_id": [ "GSM1009188", "GSM1009189", "GSM1009190", "GSM1009191", "GSM1009192", "GSM1009193", "GSM1009194", "GSM1009195", "GSM1009196", "GSM1009197", "GSM1009198", "GSM1009199", "GSM1009200", "GSM1009201" ], "type": "specimen", "id": "GDS4547_20" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4547", "version": 1.0, "instances": "140", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4547.tab", "compression": "gz" } ], [ [ "GDS4548.tab" ], { "title": "Probiotic effect on inflamed colonic explants", "description": "Analysis of colonic intestinal explants stimulated with PMA/IO to induce pro-inflammatory conditions then incubated with various commensal lactobacilli strains. Results provide insight into the molecular basis of probiotic attenuation of inflammatory processes in a colon organ culture model.", "type": "Expression profiling by array", "pubmed_id": "22669626", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE23630", "order": "none", "update_date": "Sep 18 2013", "subsets": [ { "dataset_id": "GDS4548", "description": "directly frozen", "sample_id": [ "GSM579384", "GSM579385", "GSM579386" ], "type": "specimen", "id": "GDS4548_1" }, { "dataset_id": "GDS4548", "description": "explant", "sample_id": [ "GSM579381", "GSM579382", "GSM579383", "GSM579387", "GSM579388", "GSM579389", "GSM579390", "GSM579391", "GSM579392", "GSM579393", "GSM579394", "GSM579395", "GSM579396", "GSM579397", "GSM579398" ], "type": "specimen", "id": "GDS4548_2" }, { "dataset_id": "GDS4548", "description": "untreated", "sample_id": [ "GSM579381", "GSM579382", "GSM579383", "GSM579384", "GSM579385", "GSM579386" ], "type": "agent", "id": "GDS4548_3" }, { "dataset_id": "GDS4548", "description": "PMA/IO", "sample_id": [ "GSM579387", "GSM579388", "GSM579389", "GSM579390", "GSM579391", "GSM579392", "GSM579393", "GSM579394", "GSM579395", "GSM579396", "GSM579397", "GSM579398" ], "type": "agent", "id": "GDS4548_4" }, { "dataset_id": "GDS4548", "description": "control", "sample_id": [ "GSM579381", "GSM579382", "GSM579383", "GSM579384", "GSM579385", "GSM579386", "GSM579396", "GSM579397", "GSM579398" ], "type": "protocol", "id": "GDS4548_5" }, { "dataset_id": "GDS4548", "description": "L. paracasei BL23 inoculated", "sample_id": [ "GSM579387", "GSM579388", "GSM579389" ], "type": "protocol", "id": "GDS4548_6" }, { "dataset_id": "GDS4548", "description": "L. plantarum 299v inoculated", "sample_id": [ "GSM579390", "GSM579391", "GSM579392" ], "type": "protocol", "id": "GDS4548_7" }, { "dataset_id": "GDS4548", "description": "L. plantarum 299v (A-) nonadherent mutant inoculated", "sample_id": [ "GSM579393", "GSM579394", "GSM579395" ], "type": "protocol", "id": "GDS4548_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4548", "version": 1.0, "instances": "18", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4548.tab", "compression": "gz" } ], [ [ "GDS4549.tab" ], { "title": "Pulmonary fibrosis with associated pulmonary hypertension: lung explants", "description": "Analysis of lung from pulmonary fibrosis (PF) patients divided into different groups based on the mean pulmonary arterial pressure (mPAP): severe pulmonary hypertension (PH) group, intermediate PH group, NoPH group. Results provide insight into the pathobiology of PF with associated PH.", "type": "Expression profiling by array", "pubmed_id": "21835902", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "116", "value_type": "transformed count", "reference_series": "GSE24988", "order": "none", "update_date": "Sep 18 2013", "subsets": [ { "dataset_id": "GDS4549", "description": "PF + severe PH", "sample_id": [ "GSM613638", "GSM613639", "GSM613640", "GSM613641", "GSM613642", "GSM613643", "GSM613644", "GSM613645", "GSM613646", "GSM613647", "GSM613648", "GSM613649", "GSM613650", "GSM613651", "GSM613652", "GSM613653", "GSM613654" ], "type": "disease state", "id": "GDS4549_1" }, { "dataset_id": "GDS4549", "description": "PF + intermediate PH", "sample_id": [ "GSM613655", "GSM613656", "GSM613657", "GSM613658", "GSM613659", "GSM613660", "GSM613661", "GSM613662", "GSM613663", "GSM613664", "GSM613665", "GSM613666", "GSM613667", "GSM613668", "GSM613669", "GSM613670", "GSM613671", "GSM613672", "GSM613673", "GSM613674", "GSM613675", "GSM613676", "GSM613677", "GSM613678", "GSM613679", "GSM613680", "GSM613681", "GSM613682", "GSM613683", "GSM613684", "GSM613685", "GSM613686", "GSM613687", "GSM613688", "GSM613689", "GSM613690", "GSM613691", "GSM613692", "GSM613693", "GSM613694", "GSM613695", "GSM613696", "GSM613697", "GSM613698", "GSM613699" ], "type": "disease state", "id": "GDS4549_2" }, { "dataset_id": "GDS4549", "description": "PF + no PH", "sample_id": [ "GSM613700", "GSM613701", "GSM613702", "GSM613703", "GSM613704", "GSM613705", "GSM613706", "GSM613707", "GSM613708", "GSM613709", "GSM613710", "GSM613711", "GSM613712", "GSM613713", "GSM613714", "GSM613715", "GSM613716", "GSM613717", "GSM613718", "GSM613719", "GSM613720", "GSM613721" ], "type": "disease state", "id": "GDS4549_3" }, { "dataset_id": "GDS4549", "description": "PH validation set", "sample_id": [ "GSM613722", "GSM613723", "GSM613724", "GSM613725", "GSM613726", "GSM613727", "GSM613728", "GSM613729", "GSM613730", "GSM613731", "GSM613732", "GSM613733", "GSM613734", "GSM613735", "GSM613736", "GSM613737", "GSM613738", "GSM613739", "GSM613740", "GSM613741", "GSM613742", "GSM613743", "GSM613744", "GSM613745", "GSM613746", "GSM613747", "GSM613748", "GSM613749", "GSM613750", "GSM613751", "GSM613752", "GSM613753" ], "type": "disease state", "id": "GDS4549_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4549", "version": 1.0, "instances": "116", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4549.tab", "compression": "gz" } ], [ [ "GDS4550.tab" ], { "title": "Periodic Fever, Aphthous stomatitis, Pharyngitis, and Adenitis (PFAPA) syndrome: whole blood", "description": "Analysis of whole blood from pediatric PFAPA patients during flares and asymptomatic intervals; hereditary autoinflammatory disease patients during flares were also examined. PFAPA is a common periodic fever disease in children. Results provide insight into the molecular basis of PFAPA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "21478439", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE17732", "order": "none", "update_date": "May 28 2014", "subsets": [ { "dataset_id": "GDS4550", "description": "PFAPA", "sample_id": [ "GSM442636", "GSM442637", "GSM442638", "GSM442639", "GSM442640", "GSM442641", "GSM442642", "GSM442643", "GSM442644", "GSM442645", "GSM442646", "GSM442647" ], "type": "disease state", "id": "GDS4550_1" }, { "dataset_id": "GDS4550", "description": "healthy", "sample_id": [ "GSM442648", "GSM442649", "GSM442650", "GSM442651", "GSM442652", "GSM442653" ], "type": "disease state", "id": "GDS4550_2" }, { "dataset_id": "GDS4550", "description": "FMF", "sample_id": [ "GSM442654", "GSM442655" ], "type": "disease state", "id": "GDS4550_3" }, { "dataset_id": "GDS4550", "description": "TRAPS", "sample_id": [ "GSM442656" ], "type": "disease state", "id": "GDS4550_4" }, { "dataset_id": "GDS4550", "description": "CAPS", "sample_id": [ "GSM442657", "GSM442658", "GSM442659" ], "type": "disease state", "id": "GDS4550_5" }, { "dataset_id": "GDS4550", "description": "non-flare", "sample_id": [ "GSM442636", "GSM442637", "GSM442638", "GSM442639", "GSM442640", "GSM442641" ], "type": "other", "id": "GDS4550_6" }, { "dataset_id": "GDS4550", "description": "flare", "sample_id": [ "GSM442642", "GSM442643", "GSM442644", "GSM442645", "GSM442646", "GSM442647", "GSM442654", "GSM442655", "GSM442656", "GSM442657", "GSM442658", "GSM442659" ], "type": "other", "id": "GDS4550_7" }, { "dataset_id": "GDS4550", "description": "patient 1", "sample_id": [ "GSM442636", "GSM442642" ], "type": "individual", "id": "GDS4550_8" }, { "dataset_id": "GDS4550", "description": "patient 2", "sample_id": [ "GSM442637", "GSM442643" ], "type": "individual", "id": "GDS4550_9" }, { "dataset_id": "GDS4550", "description": "patient 3", "sample_id": [ "GSM442638", "GSM442644" ], "type": "individual", "id": "GDS4550_10" }, { "dataset_id": "GDS4550", "description": "patient 4", "sample_id": [ "GSM442639", "GSM442645" ], "type": "individual", "id": "GDS4550_11" }, { "dataset_id": "GDS4550", "description": "patient 5", "sample_id": [ "GSM442640", "GSM442646" ], "type": "individual", "id": "GDS4550_12" }, { "dataset_id": "GDS4550", "description": "patient 6", "sample_id": [ "GSM442641", "GSM442647" ], "type": "individual", "id": "GDS4550_13" }, { "dataset_id": "GDS4550", "description": "control 1", "sample_id": [ "GSM442648" ], "type": "individual", "id": "GDS4550_14" }, { "dataset_id": "GDS4550", "description": "control 2", "sample_id": [ "GSM442649" ], "type": "individual", "id": "GDS4550_15" }, { "dataset_id": "GDS4550", "description": "control 3", "sample_id": [ "GSM442650" ], "type": "individual", "id": "GDS4550_16" }, { "dataset_id": "GDS4550", "description": "control 4", "sample_id": [ "GSM442651" ], "type": "individual", "id": "GDS4550_17" }, { "dataset_id": "GDS4550", "description": "control 5", "sample_id": [ "GSM442652" ], "type": "individual", "id": "GDS4550_18" }, { "dataset_id": "GDS4550", "description": "control 6", "sample_id": [ "GSM442653" ], "type": "individual", "id": "GDS4550_19" }, { "dataset_id": "GDS4550", "description": "patient 7", "sample_id": [ "GSM442654" ], "type": "individual", "id": "GDS4550_20" }, { "dataset_id": "GDS4550", "description": "patient 8", "sample_id": [ "GSM442655" ], "type": "individual", "id": "GDS4550_21" }, { "dataset_id": "GDS4550", "description": "patient 9", "sample_id": [ "GSM442656" ], "type": "individual", "id": "GDS4550_22" }, { "dataset_id": "GDS4550", "description": "patient 10", "sample_id": [ "GSM442657" ], "type": "individual", "id": "GDS4550_23" }, { "dataset_id": "GDS4550", "description": "patient 11", "sample_id": [ "GSM442658" ], "type": "individual", "id": "GDS4550_24" }, { "dataset_id": "GDS4550", "description": "patient 12", "sample_id": [ "GSM442659" ], "type": "individual", "id": "GDS4550_25" }, { "dataset_id": "GDS4550", "description": "control", "sample_id": [ "GSM442648", "GSM442649", "GSM442650", "GSM442651", "GSM442652", "GSM442653" ], "type": "other", "id": "GDS4550_26" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4550", "version": 1.0, "instances": "24", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4550.tab", "compression": "gz" } ], [ [ "GDS4551.tab" ], { "title": "Interleukin-10 effect on peripheral blood mononuclear cells", "description": "Analysis of healthy PBMCs stimulated with IL-10. PBMC results integrated with tuberculosis and leprosy transcriptional profiles provide insight into molecular mechanisms by which type I interferons (e.g., IFN-\u03b2 and downstream gene IL-10) may suppress type II interferon anti-mycobacterial responses.", "type": "Expression profiling by array", "pubmed_id": "23449998", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE43700", "order": "none", "update_date": "May 28 2014", "subsets": [ { "dataset_id": "GDS4551", "description": "control", "sample_id": [ "GSM1068613", "GSM1068615", "GSM1068617", "GSM1068619" ], "type": "agent", "id": "GDS4551_1" }, { "dataset_id": "GDS4551", "description": "interleukin-10", "sample_id": [ "GSM1068614", "GSM1068616", "GSM1068618", "GSM1068620" ], "type": "agent", "id": "GDS4551_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4551", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4551.tab", "compression": "gz" } ], [ [ "GDS4553.tab" ], { "title": "Measles virus brain infection model: right cerebral hemisphere", "description": "Analysis of the right half of the brain (contralateral to the inoculation hemisphere) from MeV-infected hsp70 transgenics at 5-10 days post infection. Hsp70 is host protective in this model of MeV brain infection. Results provide insight into the molecular basis of hsp70-dependent innate immunity.", "type": "Expression profiling by array", "pubmed_id": "23135720", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE42264", "order": "none", "update_date": "Jun 16 2014", "subsets": [ { "dataset_id": "GDS4553", "description": "hsp70 transgenic", "sample_id": [ "GSM1036421", "GSM1036422", "GSM1036423", "GSM1036424", "GSM1036425", "GSM1036426", "GSM1036427", "GSM1036428", "GSM1036429", "GSM1036439", "GSM1036440", "GSM1036441", "GSM1036442" ], "type": "genotype/variation", "id": "GDS4553_1" }, { "dataset_id": "GDS4553", "description": "non-transgenic", "sample_id": [ "GSM1036430", "GSM1036431", "GSM1036432", "GSM1036433", "GSM1036434", "GSM1036435", "GSM1036436", "GSM1036437", "GSM1036438", "GSM1036443", "GSM1036444", "GSM1036445", "GSM1036446" ], "type": "genotype/variation", "id": "GDS4553_2" }, { "dataset_id": "GDS4553", "description": "measle virus", "sample_id": [ "GSM1036421", "GSM1036422", "GSM1036423", "GSM1036424", "GSM1036425", "GSM1036426", "GSM1036427", "GSM1036428", "GSM1036429", "GSM1036430", "GSM1036431", "GSM1036432", "GSM1036433", "GSM1036434", "GSM1036435", "GSM1036436", "GSM1036437", "GSM1036438" ], "type": "infection", "id": "GDS4553_3" }, { "dataset_id": "GDS4553", "description": "uninfected", "sample_id": [ "GSM1036439", "GSM1036440", "GSM1036441", "GSM1036442", "GSM1036443", "GSM1036444", "GSM1036445", "GSM1036446" ], "type": "infection", "id": "GDS4553_4" }, { "dataset_id": "GDS4553", "description": "5 days post infection", "sample_id": [ "GSM1036439", "GSM1036440", "GSM1036441", "GSM1036442", "GSM1036443", "GSM1036444", "GSM1036445", "GSM1036446", "GSM1036421", "GSM1036422", "GSM1036423", "GSM1036424", "GSM1036430", "GSM1036431", "GSM1036432", "GSM1036433" ], "type": "time", "id": "GDS4553_5" }, { "dataset_id": "GDS4553", "description": "10 days post infection", "sample_id": [ "GSM1036425", "GSM1036426", "GSM1036427", "GSM1036428", "GSM1036429", "GSM1036434", "GSM1036435", "GSM1036436", "GSM1036437", "GSM1036438" ], "type": "time", "id": "GDS4553_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4553", "version": 1.0, "instances": "26", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4553.tab", "compression": "gz" } ], [ [ "GDS4554.tab" ], { "title": "Akt transgenic response to lymphocytic choriomeningitis virus (LCMV) infection: CD8 T cell types", "description": "Analysis of na\u00efve CD8 T cells, short-lived effector or memory precursor effector cells from LCMV-infected P14/WT or P14/Akt transgenic females. Results provide insight into the role of Akt in effector and memory CD8 T cell differentiation during viral infection.", "type": "Expression profiling by array", "pubmed_id": "22467649", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE36168", "order": "none", "update_date": "Jun 16 2014", "subsets": [ { "dataset_id": "GDS4554", "description": "wild type", "sample_id": [ "GSM882144", "GSM882145", "GSM882146" ], "type": "genotype/variation", "id": "GDS4554_1" }, { "dataset_id": "GDS4554", "description": "Akt transgenic", "sample_id": [ "GSM882147", "GSM882148" ], "type": "genotype/variation", "id": "GDS4554_2" }, { "dataset_id": "GDS4554", "description": "naive CD8 T cells", "sample_id": [ "GSM882144", "GSM882147" ], "type": "cell type", "id": "GDS4554_3" }, { "dataset_id": "GDS4554", "description": "short-lived effector cells", "sample_id": [ "GSM882145", "GSM882148" ], "type": "cell type", "id": "GDS4554_4" }, { "dataset_id": "GDS4554", "description": "memory precursor effector cells", "sample_id": [ "GSM882146" ], "type": "cell type", "id": "GDS4554_5" }, { "dataset_id": "GDS4554", "description": "uninfected", "sample_id": [ "GSM882144", "GSM882147" ], "type": "infection", "id": "GDS4554_6" }, { "dataset_id": "GDS4554", "description": "LCMV", "sample_id": [ "GSM882145", "GSM882146", "GSM882148" ], "type": "infection", "id": "GDS4554_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4554", "version": 1.0, "instances": "5", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4554.tab", "compression": "gz" } ], [ [ "GDS4555.tab" ], { "title": "Lymphocytic choriomeningitis virus infection model during chronic and acute infection: splenic effector CD8 T cell types", "description": "Analysis of primary effector (naive) and secondary effector (memory) CD8+ T cells at day 8 post-acute or post-chronic LCMV infection. Results provide insight into the response of memory CD8+ T cells to persistent antigen restimulation, in support of rational vaccine design for chronic infections.", "type": "Expression profiling by array", "pubmed_id": "21856186", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE30962", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4555", "description": "primary effector CD8 T cells", "sample_id": [ "GSM767669", "GSM767671", "GSM767675", "GSM767678", "GSM767666", "GSM767668", "GSM767673", "GSM767676", "GSM767680" ], "type": "cell type", "id": "GDS4555_1" }, { "dataset_id": "GDS4555", "description": "secondary effector CD8 T cells", "sample_id": [ "GSM767670", "GSM767674", "GSM767677", "GSM767665", "GSM767667", "GSM767672", "GSM767679" ], "type": "cell type", "id": "GDS4555_2" }, { "dataset_id": "GDS4555", "description": "chronic LCMV", "sample_id": [ "GSM767665", "GSM767667", "GSM767672", "GSM767679", "GSM767666", "GSM767668", "GSM767673", "GSM767676", "GSM767680" ], "type": "infection", "id": "GDS4555_3" }, { "dataset_id": "GDS4555", "description": "acute LCMV", "sample_id": [ "GSM767669", "GSM767671", "GSM767675", "GSM767678", "GSM767670", "GSM767674", "GSM767677" ], "type": "infection", "id": "GDS4555_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4555", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4555.tab", "compression": "gz" } ], [ [ "GDS4556.tab" ], { "title": "Spleen response to acute LCMV-Armstrong and persistent LCMV-Clone13 infections: time course", "description": "Analysis of spleen infected with 2 strains of lymphocytic choriomeningitis virus. LCMV-Arm induces T-cell response that resolves infection within 10 days; LCMV-Cl13 induces persistent infection via immunosuppression. Results provide insight into molecular basis of virus-induced immunosuppression.", "type": "Expression profiling by array", "pubmed_id": "23580528", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE44322", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4556", "description": "uninfected control", "sample_id": [ "GSM1083152", "GSM1083153", "GSM1083154", "GSM1083155" ], "type": "infection", "id": "GDS4556_1" }, { "dataset_id": "GDS4556", "description": "LCMV-Armstrong", "sample_id": [ "GSM1083156", "GSM1083157", "GSM1083158", "GSM1083159", "GSM1083160", "GSM1083161", "GSM1083162", "GSM1083163", "GSM1083164", "GSM1083165", "GSM1083166" ], "type": "infection", "id": "GDS4556_2" }, { "dataset_id": "GDS4556", "description": "LCMV-Clone 13", "sample_id": [ "GSM1083167", "GSM1083168", "GSM1083169", "GSM1083170", "GSM1083171", "GSM1083172", "GSM1083173", "GSM1083174", "GSM1083175", "GSM1083176", "GSM1083177" ], "type": "infection", "id": "GDS4556_3" }, { "dataset_id": "GDS4556", "description": "day 0", "sample_id": [ "GSM1083155", "GSM1083154", "GSM1083153", "GSM1083152" ], "type": "time", "id": "GDS4556_4" }, { "dataset_id": "GDS4556", "description": "day 5", "sample_id": [ "GSM1083169", "GSM1083168", "GSM1083167", "GSM1083158", "GSM1083157", "GSM1083156" ], "type": "time", "id": "GDS4556_5" }, { "dataset_id": "GDS4556", "description": "day 9", "sample_id": [ "GSM1083173", "GSM1083172", "GSM1083171", "GSM1083170", "GSM1083162", "GSM1083161", "GSM1083160", "GSM1083159" ], "type": "time", "id": "GDS4556_6" }, { "dataset_id": "GDS4556", "description": "day 30", "sample_id": [ "GSM1083177", "GSM1083176", "GSM1083175", "GSM1083174", "GSM1083166", "GSM1083165", "GSM1083164", "GSM1083163" ], "type": "time", "id": "GDS4556_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4556", "version": 1.0, "instances": "26", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4556.tab", "compression": "gz" } ], [ [ "GDS4557.tab" ], { "title": "CD34+derived erythoblast co-culture with Plasmodium falciparum 3D7 (GenePattern analysis)", "description": "Analysis of growth factor-mobilized, CD34+ hematopoietic stem cells in vitro differentiated to day 10 (polychromatophilic stage) or day 14 (orthochromatic stage) then infected with P. falciparum for 24 hr. Results provide insight into host erythroblast cell response to infection by P. falciparum.", "type": "Expression profiling by array", "pubmed_id": "21573240", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE24849", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4557", "description": "polychromatophilic 10 day differentiation", "sample_id": [ "GSM611246", "GSM611245", "GSM611244", "GSM611243", "GSM611242", "GSM611241", "GSM611240", "GSM611239" ], "type": "development stage", "id": "GDS4557_1" }, { "dataset_id": "GDS4557", "description": "orthochromatic 14 day differentiation", "sample_id": [ "GSM611254", "GSM611253", "GSM611252", "GSM611251", "GSM611250", "GSM611249", "GSM611248", "GSM611247" ], "type": "development stage", "id": "GDS4557_2" }, { "dataset_id": "GDS4557", "description": "Plasmodium falciparum", "sample_id": [ "GSM611246", "GSM611245", "GSM611244", "GSM611254", "GSM611253", "GSM611252" ], "type": "infection", "id": "GDS4557_3" }, { "dataset_id": "GDS4557", "description": "uninfected", "sample_id": [ "GSM611249", "GSM611248", "GSM611247", "GSM611243", "GSM611242", "GSM611241", "GSM611240", "GSM611239", "GSM611251", "GSM611250" ], "type": "infection", "id": "GDS4557_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4557", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4557.tab", "compression": "gz" } ], [ [ "GDS4558.tab" ], { "title": "CD34+derived erythoblast co-culture with Plasmodium falciparum 3D7 (Dchip analysis)", "description": "Analysis of growth factor-mobilized, CD34+ hematopoietic stem cells in vitro differentiated to day 10 (polychromatophilic stage) or day 14 (orthochromatic stage) then infected with P. falciparum for 24 hr. Results provide insight into host erythroblast cell response to infection by P. falciparum.", "type": "Expression profiling by array", "pubmed_id": "21573240", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE24849", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4558", "description": "polychromatophilic 10 day differentiation", "sample_id": [ "GSM611255", "GSM611256", "GSM611257", "GSM611258", "GSM611259", "GSM611260" ], "type": "development stage", "id": "GDS4558_1" }, { "dataset_id": "GDS4558", "description": "orthochromatic 14 day differentiation", "sample_id": [ "GSM611261", "GSM611262", "GSM611263", "GSM611264", "GSM611265", "GSM611266" ], "type": "development stage", "id": "GDS4558_2" }, { "dataset_id": "GDS4558", "description": "Plasmodium falciparum", "sample_id": [ "GSM611266", "GSM611265", "GSM611264", "GSM611260", "GSM611259", "GSM611258" ], "type": "infection", "id": "GDS4558_3" }, { "dataset_id": "GDS4558", "description": "uninfected", "sample_id": [ "GSM611263", "GSM611262", "GSM611261", "GSM611257", "GSM611256", "GSM611255" ], "type": "infection", "id": "GDS4558_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4558", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4558.tab", "compression": "gz" } ], [ [ "GDS4559.tab" ], { "title": "Childhood cerebral adrenoleukodystrophy: primary dermal fibroblasts", "description": "Analysis of fibroblasts from patients with CCALD, the childhood cerebral form of X-linked adrenoleukodystrophy (X-ALD). X-ALD is an early onset X-linked neurological disorder affecting the nervous, adrenocortical, and male reproductive systems. Results provide insight into molecular basis of CCALD.", "type": "Expression profiling by array", "pubmed_id": "23036268", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE34308", "order": "none", "update_date": "Jun 16 2014", "subsets": [ { "dataset_id": "GDS4559", "description": "healthy control", "sample_id": [ "GSM847078", "GSM847079", "GSM847080", "GSM847081", "GSM847082" ], "type": "disease state", "id": "GDS4559_1" }, { "dataset_id": "GDS4559", "description": "childhood cerebral adrenoleukodystrophy", "sample_id": [ "GSM847083", "GSM847084", "GSM847085", "GSM847086", "GSM847087" ], "type": "disease state", "id": "GDS4559_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4559", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4559.tab", "compression": "gz" } ], [ [ "GDS4560.tab" ], { "title": "Oral squamous cell carcinoma-derived cell lines", "description": "Analysis of oral squamous cell carcinoma (OSCC)-derived cell lines. OSCC is a lethal disease with early death typically occurring as a result of local invasion and regional lymph node metastases. Results provide insight the molecular mechanisms underlying OSCC.", "type": "Expression profiling by array", "pubmed_id": "19448673", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE31853", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4560", "description": "oral cancer H103", "sample_id": [ "GSM789862" ], "type": "cell line", "id": "GDS4560_1" }, { "dataset_id": "GDS4560", "description": "oral cancer H157", "sample_id": [ "GSM789863" ], "type": "cell line", "id": "GDS4560_2" }, { "dataset_id": "GDS4560", "description": "oral cancer H314", "sample_id": [ "GSM789864" ], "type": "cell line", "id": "GDS4560_3" }, { "dataset_id": "GDS4560", "description": "oral cancer H357", "sample_id": [ "GSM789865" ], "type": "cell line", "id": "GDS4560_4" }, { "dataset_id": "GDS4560", "description": "oral cancer H376", "sample_id": [ "GSM789866" ], "type": "cell line", "id": "GDS4560_5" }, { "dataset_id": "GDS4560", "description": "oral cancer H400", "sample_id": [ "GSM789890" ], "type": "cell line", "id": "GDS4560_6" }, { "dataset_id": "GDS4560", "description": "oral cancer H413", "sample_id": [ "GSM789966" ], "type": "cell line", "id": "GDS4560_7" }, { "dataset_id": "GDS4560", "description": "oral cancer M9", "sample_id": [ "GSM789967" ], "type": "cell line", "id": "GDS4560_8" }, { "dataset_id": "GDS4560", "description": "normal oral keratinocytes", "sample_id": [ "GSM789859" ], "type": "cell line", "id": "GDS4560_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4560", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4560.tab", "compression": "gz" } ], [ [ "GDS4562.tab" ], { "title": "Squamous cell carcinoma of the tongue: tumors and histologically normal surgical margins", "description": "Analysis of oral carcinoma, histologically normal margins, and adjacent normal tissues from patients with squamous cell carcinoma (OSCC) of the tongue (training set). Results provide insight into molecular signature in histologically normal margins that is predictive of oral carcinoma recurrence.", "type": "Expression profiling by array", "pubmed_id": "21989116", "platform": "GPL10526", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "17788", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "transformed count", "reference_series": "GSE31056", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4562", "description": "margin", "sample_id": [ "GSM771239", "GSM771240", "GSM771241", "GSM771242", "GSM771195", "GSM771197", "GSM771198", "GSM771199", "GSM771200", "GSM771202", "GSM771204", "GSM771205", "GSM771206", "GSM771207", "GSM771208", "GSM771209", "GSM771211", "GSM771212", "GSM771213", "GSM771214", "GSM771216", "GSM771217", "GSM771218", "GSM771219", "GSM771220", "GSM771222", "GSM771223", "GSM771225", "GSM771226", "GSM771227", "GSM771229", "GSM771230", "GSM771231", "GSM771232", "GSM771234", "GSM771235", "GSM771245", "GSM771246", "GSM771247", "GSM771236", "GSM771238", "GSM771152", "GSM771154", "GSM771155", "GSM771156", "GSM771157", "GSM771159", "GSM771160", "GSM771161", "GSM771163", "GSM771165", "GSM771166", "GSM771167", "GSM771168", "GSM771169", "GSM771171", "GSM771172", "GSM771174", "GSM771175", "GSM771176", "GSM771178", "GSM771179", "GSM771181", "GSM771182", "GSM771184", "GSM771185", "GSM771186", "GSM771188", "GSM771189", "GSM771191", "GSM771192", "GSM771193", "GSM771194" ], "type": "specimen", "id": "GDS4562_1" }, { "dataset_id": "GDS4562", "description": "tumor", "sample_id": [ "GSM771243", "GSM771196", "GSM771201", "GSM771203", "GSM771210", "GSM771215", "GSM771221", "GSM771224", "GSM771228", "GSM771233", "GSM771244", "GSM771237", "GSM771153", "GSM771158", "GSM771162", "GSM771164", "GSM771170", "GSM771173", "GSM771177", "GSM771180", "GSM771183", "GSM771187", "GSM771190" ], "type": "specimen", "id": "GDS4562_2" }, { "dataset_id": "GDS4562", "description": "no recurrence", "sample_id": [ "GSM771200", "GSM771202", "GSM771201", "GSM771206", "GSM771207", "GSM771208", "GSM771209", "GSM771211", "GSM771212", "GSM771210", "GSM771213", "GSM771214", "GSM771216", "GSM771217", "GSM771215", "GSM771218", "GSM771219", "GSM771220", "GSM771221", "GSM771222", "GSM771223", "GSM771225", "GSM771226", "GSM771224", "GSM771232", "GSM771234", "GSM771235", "GSM771233", "GSM771245", "GSM771246", "GSM771247", "GSM771244", "GSM771169", "GSM771171", "GSM771170", "GSM771172", "GSM771174", "GSM771175", "GSM771173", "GSM771176", "GSM771178", "GSM771177", "GSM771179", "GSM771181", "GSM771180", "GSM771182", "GSM771184", "GSM771185", "GSM771183", "GSM771186", "GSM771188", "GSM771187", "GSM771189", "GSM771191", "GSM771192", "GSM771193", "GSM771194", "GSM771190" ], "type": "disease state", "id": "GDS4562_3" }, { "dataset_id": "GDS4562", "description": "disease recurrence", "sample_id": [ "GSM771239", "GSM771240", "GSM771241", "GSM771242", "GSM771243", "GSM771195", "GSM771197", "GSM771198", "GSM771199", "GSM771196", "GSM771204", "GSM771205", "GSM771203", "GSM771227", "GSM771229", "GSM771230", "GSM771231", "GSM771228", "GSM771236", "GSM771238", "GSM771237", "GSM771152", "GSM771154", "GSM771153", "GSM771155", "GSM771156", "GSM771157", "GSM771158", "GSM771159", "GSM771160", "GSM771161", "GSM771162", "GSM771163", "GSM771165", "GSM771166", "GSM771167", "GSM771168", "GSM771164" ], "type": "disease state", "id": "GDS4562_4" }, { "dataset_id": "GDS4562", "description": "patient 1", "sample_id": [ "GSM771239", "GSM771240", "GSM771241", "GSM771242", "GSM771243" ], "type": "individual", "id": "GDS4562_5" }, { "dataset_id": "GDS4562", "description": "patient 2", "sample_id": [ "GSM771245", "GSM771246", "GSM771247", "GSM771244" ], "type": "individual", "id": "GDS4562_6" }, { "dataset_id": "GDS4562", "description": "patient 3", "sample_id": [ "GSM771169", "GSM771170", "GSM771171" ], "type": "individual", "id": "GDS4562_7" }, { "dataset_id": "GDS4562", "description": "patient 4", "sample_id": [ "GSM771172", "GSM771173", "GSM771174", "GSM771175" ], "type": "individual", "id": "GDS4562_8" }, { "dataset_id": "GDS4562", "description": "patient 5", "sample_id": [ "GSM771176", "GSM771177", "GSM771178" ], "type": "individual", "id": "GDS4562_9" }, { "dataset_id": "GDS4562", "description": "patient 6", "sample_id": [ "GSM771179", "GSM771180", "GSM771181" ], "type": "individual", "id": "GDS4562_10" }, { "dataset_id": "GDS4562", "description": "patient 7", "sample_id": [ "GSM771182", "GSM771183", "GSM771184", "GSM771185" ], "type": "individual", "id": "GDS4562_11" }, { "dataset_id": "GDS4562", "description": "patient 8", "sample_id": [ "GSM771186", "GSM771187", "GSM771188" ], "type": "individual", "id": "GDS4562_12" }, { "dataset_id": "GDS4562", "description": "patient 9", "sample_id": [ "GSM771189", "GSM771190", "GSM771191", "GSM771192", "GSM771193", "GSM771194" ], "type": "individual", "id": "GDS4562_13" }, { "dataset_id": "GDS4562", "description": "patient 10", "sample_id": [ "GSM771195", "GSM771196", "GSM771197", "GSM771198", "GSM771199" ], "type": "individual", "id": "GDS4562_14" }, { "dataset_id": "GDS4562", "description": "patient 11", "sample_id": [ "GSM771200", "GSM771201", "GSM771202" ], "type": "individual", "id": "GDS4562_15" }, { "dataset_id": "GDS4562", "description": "patient 12", "sample_id": [ "GSM771203", "GSM771204", "GSM771205" ], "type": "individual", "id": "GDS4562_16" }, { "dataset_id": "GDS4562", "description": "patient 13", "sample_id": [ "GSM771206", "GSM771207", "GSM771208", "GSM771209" ], "type": "individual", "id": "GDS4562_17" }, { "dataset_id": "GDS4562", "description": "patient 14", "sample_id": [ "GSM771210", "GSM771211", "GSM771212" ], "type": "individual", "id": "GDS4562_18" }, { "dataset_id": "GDS4562", "description": "patient 15", "sample_id": [ "GSM771213", "GSM771214", "GSM771215", "GSM771216", "GSM771217" ], "type": "individual", "id": "GDS4562_19" }, { "dataset_id": "GDS4562", "description": "patient 16", "sample_id": [ "GSM771218", "GSM771219", "GSM771220", "GSM771221", "GSM771222" ], "type": "individual", "id": "GDS4562_20" }, { "dataset_id": "GDS4562", "description": "patient 17", "sample_id": [ "GSM771223", "GSM771224", "GSM771225", "GSM771226" ], "type": "individual", "id": "GDS4562_21" }, { "dataset_id": "GDS4562", "description": "patient 18", "sample_id": [ "GSM771227", "GSM771228", "GSM771229", "GSM771230", "GSM771231" ], "type": "individual", "id": "GDS4562_22" }, { "dataset_id": "GDS4562", "description": "patient 19", "sample_id": [ "GSM771232", "GSM771233", "GSM771234", "GSM771235" ], "type": "individual", "id": "GDS4562_23" }, { "dataset_id": "GDS4562", "description": "patient 20", "sample_id": [ "GSM771236", "GSM771237", "GSM771238" ], "type": "individual", "id": "GDS4562_24" }, { "dataset_id": "GDS4562", "description": "patient 21", "sample_id": [ "GSM771152", "GSM771153", "GSM771154" ], "type": "individual", "id": "GDS4562_25" }, { "dataset_id": "GDS4562", "description": "patient 22", "sample_id": [ "GSM771155", "GSM771156", "GSM771157", "GSM771158" ], "type": "individual", "id": "GDS4562_26" }, { "dataset_id": "GDS4562", "description": "patient 23", "sample_id": [ "GSM771159", "GSM771160", "GSM771161", "GSM771162" ], "type": "individual", "id": "GDS4562_27" }, { "dataset_id": "GDS4562", "description": "patient 24", "sample_id": [ "GSM771163", "GSM771164", "GSM771165", "GSM771166", "GSM771167", "GSM771168" ], "type": "individual", "id": "GDS4562_28" }, { "dataset_id": "GDS4562", "description": "source: anterior margin", "sample_id": [ "GSM771202", "GSM771206", "GSM771219", "GSM771226" ], "type": "tissue", "id": "GDS4562_29" }, { "dataset_id": "GDS4562", "description": "antero-lateral margin", "sample_id": [ "GSM771229" ], "type": "tissue", "id": "GDS4562_30" }, { "dataset_id": "GDS4562", "description": "source: FOM margin", "sample_id": [ "GSM771247" ], "type": "tissue", "id": "GDS4562_31" }, { "dataset_id": "GDS4562", "description": "source: FOM tumor", "sample_id": [ "GSM771244" ], "type": "tissue", "id": "GDS4562_32" }, { "dataset_id": "GDS4562", "description": "source: inferior margin", "sample_id": [ "GSM771218", "GSM771204" ], "type": "tissue", "id": "GDS4562_33" }, { "dataset_id": "GDS4562", "description": "source: lateral margin", "sample_id": [ "GSM771193", "GSM771208", "GSM771223", "GSM771211" ], "type": "tissue", "id": "GDS4562_34" }, { "dataset_id": "GDS4562", "description": "source: left lateral margin", "sample_id": [ "GSM771184", "GSM771242" ], "type": "tissue", "id": "GDS4562_35" }, { "dataset_id": "GDS4562", "description": "source: left posterior margin", "sample_id": [ "GSM771178", "GSM771192" ], "type": "tissue", "id": "GDS4562_36" }, { "dataset_id": "GDS4562", "description": "source: margin", "sample_id": [ "GSM771181", "GSM771154", "GSM771238", "GSM771156", "GSM771157", "GSM771160", "GSM771161", "GSM771165", "GSM771166", "GSM771167", "GSM771168" ], "type": "tissue", "id": "GDS4562_37" }, { "dataset_id": "GDS4562", "description": "source: medial margin", "sample_id": [ "GSM771175", "GSM771207", "GSM771197" ], "type": "tissue", "id": "GDS4562_38" }, { "dataset_id": "GDS4562", "description": "source: normal", "sample_id": [ "GSM771246", "GSM771169", "GSM771172", "GSM771176", "GSM771179", "GSM771182", "GSM771186", "GSM771189", "GSM771200", "GSM771209", "GSM771214", "GSM771225", "GSM771232", "GSM771212", "GSM771222", "GSM771205", "GSM771152", "GSM771195", "GSM771227", "GSM771236", "GSM771155", "GSM771159", "GSM771163" ], "type": "tissue", "id": "GDS4562_39" }, { "dataset_id": "GDS4562", "description": "source: normal tongue", "sample_id": [ "GSM771239" ], "type": "tissue", "id": "GDS4562_40" }, { "dataset_id": "GDS4562", "description": "source: posterior inferior margin", "sample_id": [ "GSM771230" ], "type": "tissue", "id": "GDS4562_41" }, { "dataset_id": "GDS4562", "description": "source: posterior lateral margin", "sample_id": [ "GSM771235" ], "type": "tissue", "id": "GDS4562_42" }, { "dataset_id": "GDS4562", "description": "source: posterior margin", "sample_id": [ "GSM771245", "GSM771171", "GSM771185", "GSM771188", "GSM771194", "GSM771213", "GSM771216", "GSM771217", "GSM771234", "GSM771240", "GSM771198" ], "type": "tissue", "id": "GDS4562_43" }, { "dataset_id": "GDS4562", "description": "source: right lateral margin", "sample_id": [ "GSM771241" ], "type": "tissue", "id": "GDS4562_44" }, { "dataset_id": "GDS4562", "description": "source: superior margin", "sample_id": [ "GSM771191", "GSM771220", "GSM771199", "GSM771231" ], "type": "tissue", "id": "GDS4562_45" }, { "dataset_id": "GDS4562", "description": "source: tongue base margin", "sample_id": [ "GSM771174" ], "type": "tissue", "id": "GDS4562_46" }, { "dataset_id": "GDS4562", "description": "source: tongue tumor", "sample_id": [ "GSM771243" ], "type": "tissue", "id": "GDS4562_47" }, { "dataset_id": "GDS4562", "description": "source: tumor", "sample_id": [ "GSM771170", "GSM771173", "GSM771177", "GSM771180", "GSM771183", "GSM771187", "GSM771190", "GSM771201", "GSM771215", "GSM771221", "GSM771224", "GSM771233", "GSM771210", "GSM771203", "GSM771153", "GSM771196", "GSM771228", "GSM771237", "GSM771158", "GSM771162", "GSM771164" ], "type": "tissue", "id": "GDS4562_48" } ], "taxid": "9606", "genes": 17727, "aggregation_function": "mean", "name": "GDS4562", "version": 1.0, "instances": "96", "variables": 17732, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4562.tab", "compression": "gz" } ], [ [ "GDS4563.tab" ], { "title": "Passive loading effect on gastrocnemius muscle of intensive care unit model: time course", "description": "Temporal analysis of loaded leg gastrocnemius of females (subjected to neuromuscular blockade, mechanical ventilation) following unilateral passive mechanical loading (PML). Results provide insight into molecular basis of the beneficial effects of PML on muscle mass and function in this ICU model.", "type": "Expression profiling by array", "pubmed_id": "23266938", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "transformed count", "reference_series": "GSE37944", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4563", "description": "6 hours - 4 days", "sample_id": [ "GSM930471", "GSM930472", "GSM930473", "GSM930474", "GSM930475", "GSM930476", "GSM930477", "GSM930478", "GSM930479", "GSM930480", "GSM930481", "GSM930482", "GSM930483", "GSM930494", "GSM930495", "GSM930496", "GSM930497", "GSM930498", "GSM930499", "GSM930500", "GSM930501", "GSM930502", "GSM930503", "GSM930504", "GSM930505", "GSM930506" ], "type": "time", "id": "GDS4563_1" }, { "dataset_id": "GDS4563", "description": "5-8 days", "sample_id": [ "GSM930484", "GSM930485", "GSM930486", "GSM930487", "GSM930508", "GSM930509", "GSM930510", "GSM930507" ], "type": "time", "id": "GDS4563_2" }, { "dataset_id": "GDS4563", "description": "9-14 days", "sample_id": [ "GSM930488", "GSM930489", "GSM930490", "GSM930491", "GSM930492", "GSM930493", "GSM930511", "GSM930512", "GSM930513", "GSM930514", "GSM930515", "GSM930516" ], "type": "time", "id": "GDS4563_3" }, { "dataset_id": "GDS4563", "description": "no loading", "sample_id": [ "GSM930471", "GSM930472", "GSM930473", "GSM930474", "GSM930475", "GSM930476", "GSM930477", "GSM930478", "GSM930479", "GSM930480", "GSM930481", "GSM930482", "GSM930483", "GSM930484", "GSM930485", "GSM930486", "GSM930487", "GSM930488", "GSM930489", "GSM930490", "GSM930491", "GSM930492", "GSM930493" ], "type": "protocol", "id": "GDS4563_4" }, { "dataset_id": "GDS4563", "description": "passive loading", "sample_id": [ "GSM930494", "GSM930495", "GSM930496", "GSM930497", "GSM930498", "GSM930499", "GSM930500", "GSM930501", "GSM930502", "GSM930503", "GSM930504", "GSM930505", "GSM930506", "GSM930507", "GSM930508", "GSM930509", "GSM930510", "GSM930511", "GSM930512", "GSM930513", "GSM930514", "GSM930515", "GSM930516" ], "type": "protocol", "id": "GDS4563_5" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4563", "version": 1.0, "instances": "46", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4563.tab", "compression": "gz" } ], [ [ "GDS4564.tab" ], { "title": "Nucleotide excision repair mutant xpa-1", "description": "Analysis of xpa-1 mutants deficient in nucleotide excision repair (NER). Transcription-blocking DNA damage is believed to contribute to aging and underlie activation of oxidative stress responses (OSR). Results provide insight into the transcriptomic reprogramming response in xpa-1 mutants.", "type": "Expression profiling by array", "pubmed_id": "23580547", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE39252", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4564", "description": "wild type", "sample_id": [ "GSM958827", "GSM958828", "GSM958829", "GSM958830", "GSM958831" ], "type": "genotype/variation", "id": "GDS4564_1" }, { "dataset_id": "GDS4564", "description": "xpa-1 mutant", "sample_id": [ "GSM958832", "GSM958833", "GSM958834", "GSM958835", "GSM958836" ], "type": "genotype/variation", "id": "GDS4564_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4564", "version": 1.0, "instances": "10", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4564.tab", "compression": "gz" } ], [ [ "GDS4565.tab" ], { "title": "Heme-responsive gene-2 deficient mutant", "description": "Analysis of heme-cultured HRG-2 mutants. Heme-responsive gene-2 (HRG-2) is a hypodermal, heme-binding, type I membrane protein; cytochrome distribution is abnormal in HRG-2-deficient worms. Results provide insight into molecular mechanisms underlying the regulation of heme homeostasis by HRG-2.", "type": "Expression profiling by array", "pubmed_id": "22303006", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE34471", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4565", "description": "wild type", "sample_id": [ "GSM849809", "GSM849810", "GSM849811", "GSM849812", "GSM849813", "GSM849814" ], "type": "genotype/variation", "id": "GDS4565_1" }, { "dataset_id": "GDS4565", "description": "hrg-2 mutant", "sample_id": [ "GSM849815", "GSM849816", "GSM849817", "GSM849818", "GSM849819", "GSM849820" ], "type": "genotype/variation", "id": "GDS4565_2" }, { "dataset_id": "GDS4565", "description": "heme 4uM", "sample_id": [ "GSM849816", "GSM849815", "GSM849811", "GSM849810", "GSM849809", "GSM849817" ], "type": "protocol", "id": "GDS4565_3" }, { "dataset_id": "GDS4565", "description": "heme 20uM", "sample_id": [ "GSM849820", "GSM849819", "GSM849818", "GSM849814", "GSM849813", "GSM849812" ], "type": "protocol", "id": "GDS4565_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4565", "version": 1.0, "instances": "12", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4565.tab", "compression": "gz" } ], [ [ "GDS4566.tab" ], { "title": "Dietary probiotic Lactobacillus effect on N2 wildtype strain: young developmental stage", "description": "Analysis of young worms fed live lactic acid bacteria (LAB) Lactobacillus rhamnosus CNCM I-3690 or CNCM I-4317 for 3 days. L. rhamnosus CNCM I-3690 protects against oxidative stress and increases lifespan in worms. Results provide insight into probiotic LAB-induced oxidative stress protection.", "type": "Expression profiling by array", "pubmed_id": "23300685", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE42192", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4566", "description": "E. coli control", "sample_id": [ "GSM1034592", "GSM1034593", "GSM1034594" ], "type": "protocol", "id": "GDS4566_1" }, { "dataset_id": "GDS4566", "description": "L. rhamnosus CNCM I-3690", "sample_id": [ "GSM1034595", "GSM1034596", "GSM1034597" ], "type": "protocol", "id": "GDS4566_2" }, { "dataset_id": "GDS4566", "description": "L. rhamnosus CNCM I-4317", "sample_id": [ "GSM1034598", "GSM1034599", "GSM1034600" ], "type": "protocol", "id": "GDS4566_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4566", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4566.tab", "compression": "gz" } ], [ [ "GDS4567.tab" ], { "title": "Filarial nematode asparaginyl-tRNA synthetase effect on immature dendritic cells", "description": "Analysis of iDCs stimulated with rBmAsnRS, a recombinant nematode protein. Dysregulation of DCs has been implicated in human inflammatory bowel disease (IBD) pathogenesis. rBmAsnRS attenuates colonic inflammation in a murine model of IBD. Results provide insight into the molecular basis of IBD.", "type": "Expression profiling by array", "pubmed_id": "23254300", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE39999", "order": "none", "update_date": "Jun 17 2014", "subsets": [ { "dataset_id": "GDS4567", "description": "no stimulation", "sample_id": [ "GSM983110", "GSM983111" ], "type": "protocol", "id": "GDS4567_1" }, { "dataset_id": "GDS4567", "description": "rBmAsnRS stimulation", "sample_id": [ "GSM983108", "GSM983109" ], "type": "protocol", "id": "GDS4567_2" }, { "dataset_id": "GDS4567", "description": "interleukin-8 stimulation", "sample_id": [ "GSM983106", "GSM983107" ], "type": "protocol", "id": "GDS4567_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4567", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4567.tab", "compression": "gz" } ], [ [ "GDS4568.tab" ], { "title": "Copper sulfate stress effect on kgb-1 mutants", "description": "Analysis of kgb-1 mutants incubated with 1mM copper sulfate for 1hr. The conserved KGB-1 JNK mitogen-activated protein kinase pathway regulates the response to heavy metal stress. Results provide insight into molecular mechanisms underlying the heavy metal stress response.", "type": "Expression profiling by array", "pubmed_id": "23437011", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE42703", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4568", "description": "wildtype", "sample_id": [ "GSM1048197", "GSM1048198" ], "type": "genotype/variation", "id": "GDS4568_1" }, { "dataset_id": "GDS4568", "description": "kgb-1(km21) mutant", "sample_id": [ "GSM1048199", "GSM1048200" ], "type": "genotype/variation", "id": "GDS4568_2" }, { "dataset_id": "GDS4568", "description": "control", "sample_id": [ "GSM1048197", "GSM1048199" ], "type": "stress", "id": "GDS4568_3" }, { "dataset_id": "GDS4568", "description": "copper sulfate", "sample_id": [ "GSM1048198", "GSM1048200" ], "type": "stress", "id": "GDS4568_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4568", "version": 1.0, "instances": "4", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4568.tab", "compression": "gz" } ], [ [ "GDS4569.tab" ], { "title": "Foreskin fibroblast response to Toxoplasma gondii RH type 1 (ROP5) mutant infection", "description": "Analysis of foreskin fibroblasts infected with Toxoplasma gondii strains wildtype RH\u0394ku80 or ROP5-deficient mutant RH\u0394ku80\u0394rop5. The normally virulent parasite is rendered avirulent when lacking ROP5 pseudokinase. Results provide insight into the mechanism of action of ROP5.", "type": "Expression profiling by array", "pubmed_id": "23144612", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE32104", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4569", "description": "T. gondii RH\u0394ku80 wildtype", "sample_id": [ "GSM796002", "GSM796003" ], "type": "infection", "id": "GDS4569_1" }, { "dataset_id": "GDS4569", "description": "T. gondii RH\u0394ku80\u0394rop5 mutant", "sample_id": [ "GSM796004", "GSM796005" ], "type": "infection", "id": "GDS4569_2" }, { "dataset_id": "GDS4569", "description": "uninfected", "sample_id": [ "GSM796006", "GSM796007" ], "type": "infection", "id": "GDS4569_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4569", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4569.tab", "compression": "gz" } ], [ [ "GDS4570.tab" ], { "title": "Mitochondrial stress effect on ATFS-1 mutants", "description": "Analysis of atfs-1 mutants raised on spg-7(RNAi) which induces mitochondrial stress (MS). ATFS-1 (activating transcription factor associated with stress-1) senses MS and communicates with the nucleus during the mitochondrial unfolded protein response. Results provide insight into the MS response.", "type": "Expression profiling by array", "pubmed_id": "22700657", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE38196", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4570", "description": "atfs-1(tm4525) mutant", "sample_id": [ "GSM936474", "GSM936478", "GSM936482", "GSM936475", "GSM936479", "GSM936483" ], "type": "genotype/variation", "id": "GDS4570_1" }, { "dataset_id": "GDS4570", "description": "wildtype", "sample_id": [ "GSM936472", "GSM936476", "GSM936480", "GSM936473", "GSM936477", "GSM936481" ], "type": "genotype/variation", "id": "GDS4570_2" }, { "dataset_id": "GDS4570", "description": "control", "sample_id": [ "GSM936474", "GSM936478", "GSM936482", "GSM936472", "GSM936476", "GSM936480" ], "type": "protocol", "id": "GDS4570_3" }, { "dataset_id": "GDS4570", "description": "spg-7 RNAi knockdown", "sample_id": [ "GSM936475", "GSM936479", "GSM936483", "GSM936473", "GSM936477", "GSM936481" ], "type": "protocol", "id": "GDS4570_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4570", "version": 1.0, "instances": "12", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4570.tab", "compression": "gz" } ], [ [ "GDS4571.tab" ], { "title": "Toxicogenomic response to gold nanoparticle exposure", "description": "Analysis of age-synchronized L3 nematodes exposed to LC10 of gold nanoparticles (Au-NPs). The Au-NPs are used as a model for studying particle-specific effects of manufactured nanomaterials (MNMs). Results provide insight into in vivo particle-specific toxicity of Au-NPs to C. elegans.", "type": "Expression profiling by array", "pubmed_id": "22372763", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE32521", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4571", "description": "control", "sample_id": [ "GSM805419", "GSM805420", "GSM805421" ], "type": "agent", "id": "GDS4571_1" }, { "dataset_id": "GDS4571", "description": "gold nanoparticles", "sample_id": [ "GSM805422", "GSM805423", "GSM805424" ], "type": "agent", "id": "GDS4571_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4571", "version": 1.0, "instances": "6", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4571.tab", "compression": "gz" } ], [ [ "GDS4572.tab" ], { "title": "Tuberous sclerosis complex 1 deficient na\u00efve CD4 and CD8 T cells", "description": "Analysis of na\u00efve CD4 and CD8 T cells deficient for Tuberous sclerosis complex 1 (Tsc1). Tsc1 tumor suppressor is an mTOR signaling modulator involved in naive T cell quiescence and immune homeostasis regulation. Results identify a Tsc1-dependent gene signature in naive T cells.", "type": "Expression profiling by array", "pubmed_id": "21765414", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE29797", "order": "none", "update_date": "Jun 02 2013", "subsets": [ { "dataset_id": "GDS4572", "description": "wild type", "sample_id": [ "GSM738381", "GSM738382", "GSM738363", "GSM738367", "GSM738370" ], "type": "genotype/variation", "id": "GDS4572_1" }, { "dataset_id": "GDS4572", "description": "Tsc1 deficient", "sample_id": [ "GSM738383", "GSM738384", "GSM738373", "GSM738377", "GSM738379" ], "type": "genotype/variation", "id": "GDS4572_2" }, { "dataset_id": "GDS4572", "description": "CD4 T cell", "sample_id": [ "GSM738363", "GSM738367", "GSM738370", "GSM738373", "GSM738377", "GSM738379" ], "type": "cell type", "id": "GDS4572_3" }, { "dataset_id": "GDS4572", "description": "CD8 T cell", "sample_id": [ "GSM738381", "GSM738382", "GSM738383", "GSM738384" ], "type": "cell type", "id": "GDS4572_4" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS4572", "version": 1.0, "instances": "10", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4572.tab", "compression": "gz" } ], [ [ "GDS4573.tab" ], { "title": "Transactive response DNA-binding Protein (TDP-1) loss-of-function mutants", "description": "Analysis of tdp-1(ok803lf) mutants. TDP-1 loss alleviates proteotoxicity and extends life span. Results provide insight into a role for TDP-1 in the regulation of protein homeostasis and aging.", "type": "Expression profiling by array", "pubmed_id": "22232551", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34113", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4573", "description": "wildtype", "sample_id": [ "GSM842065", "GSM842066", "GSM842067" ], "type": "genotype/variation", "id": "GDS4573_1" }, { "dataset_id": "GDS4573", "description": "tdp-1(ok803lf) mutant", "sample_id": [ "GSM842068", "GSM842069", "GSM842070" ], "type": "genotype/variation", "id": "GDS4573_2" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4573", "version": 1.0, "instances": "6", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4573.tab", "compression": "gz" } ], [ [ "GDS4574.tab" ], { "title": "Transforming growth factor-\u03b2 effect on fibroblasts in the presence of Trypanosoma cruzi conditioned medium", "description": "Analysis of fibroblasts stimulated with TGF-\u03b2 in the presence of T. cruzi-conditioned medium (PCM). A soluble factor(s) from T. cruzi inhibits TGF-\u00df-induced MAP kinase activation. Results provide insight into the ability of secreted parasite molecules to hinder agonist-induced host cell signaling.", "type": "Expression profiling by array", "pubmed_id": "21931601", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE16416", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4574", "description": "control", "sample_id": [ "GSM412619", "GSM412620", "GSM412621" ], "type": "protocol", "id": "GDS4574_1" }, { "dataset_id": "GDS4574", "description": "PCM", "sample_id": [ "GSM412622", "GSM412623", "GSM412624" ], "type": "protocol", "id": "GDS4574_2" }, { "dataset_id": "GDS4574", "description": "TGF-\u03b2", "sample_id": [ "GSM412625", "GSM412626", "GSM412627" ], "type": "protocol", "id": "GDS4574_3" }, { "dataset_id": "GDS4574", "description": "TGF-\u03b2/PCM", "sample_id": [ "GSM412628", "GSM412629", "GSM412630" ], "type": "protocol", "id": "GDS4574_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4574", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4574.tab", "compression": "gz" } ], [ [ "GDS4575.tab" ], { "title": "ash-2 knockdown effect on germline-deficient glp-1(e2141ts) mutant: day 2 (L3 stage)", "description": "Analysis of day 2 germline-deficient glp-1 mutants treated with ash-2 RNAi. The ASH-2 trithorax complex trimethylates histone H3 at lysine 4 (H3K4); an intact germline is required for ASH-2-induced lifespan extension. Results provide insight into the role of histone methylation in longevity.", "type": "Expression profiling by array", "pubmed_id": "20555324", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE30505", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4575", "description": "wild type", "sample_id": [ "GSM756612", "GSM756613", "GSM756614", "GSM756615", "GSM756616", "GSM756617" ], "type": "genotype/variation", "id": "GDS4575_1" }, { "dataset_id": "GDS4575", "description": "glp-1(e2141ts) mutant", "sample_id": [ "GSM756618", "GSM756619", "GSM756620", "GSM756621", "GSM756622", "GSM756623" ], "type": "genotype/variation", "id": "GDS4575_2" }, { "dataset_id": "GDS4575", "description": "empty vector", "sample_id": [ "GSM756612", "GSM756613", "GSM756614", "GSM756618", "GSM756619", "GSM756620" ], "type": "protocol", "id": "GDS4575_3" }, { "dataset_id": "GDS4575", "description": "ash-2 RNAi", "sample_id": [ "GSM756615", "GSM756616", "GSM756617", "GSM756621", "GSM756622", "GSM756623" ], "type": "protocol", "id": "GDS4575_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4575", "version": 1.0, "instances": "12", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4575.tab", "compression": "gz" } ], [ [ "GDS4576.tab" ], { "title": "Candida albicans DAY185 infection", "description": "Analysis of N2 young adults after 4hr exposure to live or heat-killed C. albicans DAY185. C. albicans hyphae can kill C. elegans in a manner modeling key aspects of mammalian pathogenesis. Results provide insight into molecular mechanisms underlying host immune response to C. albicans infection.", "type": "Expression profiling by array", "pubmed_id": "21731485", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE27401", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4576", "description": "Candida albicans DAY185_alive", "sample_id": [ "GSM677582", "GSM677583", "GSM677584" ], "type": "infection", "id": "GDS4576_1" }, { "dataset_id": "GDS4576", "description": "Candida albicans DAY185_heat-killed", "sample_id": [ "GSM677585", "GSM677586", "GSM677587" ], "type": "infection", "id": "GDS4576_2" }, { "dataset_id": "GDS4576", "description": "Escherichia coli OP50_heat killed", "sample_id": [ "GSM677588", "GSM677589", "GSM677590" ], "type": "infection", "id": "GDS4576_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS4576", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4576.tab", "compression": "gz" } ], [ [ "GDS4577.tab" ], { "title": "Homeobox transcription factor Dlx5 overexpression effect on otic vesicle derived-cell line", "description": "Analysis of otic vesicle derived 2B1 cells overexpressing Dlx5. Dlx5 is a homeobox transcription factor that plays a key role in the development of many organ systems. Results provide insight into the role of Dlx5 in the regulation of early inner ear development.", "type": "Expression profiling by array", "pubmed_id": "21227998", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE22381", "order": "none", "update_date": "Jun 08 2013", "subsets": [ { "dataset_id": "GDS4577", "description": "Dlx5 overexpression", "sample_id": [ "GSM556786", "GSM556787" ], "type": "protocol", "id": "GDS4577_1" }, { "dataset_id": "GDS4577", "description": "control", "sample_id": [ "GSM556788", "GSM556789" ], "type": "protocol", "id": "GDS4577_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4577", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4577.tab", "compression": "gz" } ], [ [ "GDS4578.tab" ], { "title": "Lipopolysaccharide-stimulated, NF\u03baB \u03b6 inhibitor (I\u03baB\u03b6) deficient-peritoneal macrophages", "description": "Analysis of I\u03baB\u03b6-deficient peritoneal macrophages (PM\u03c8) stimulated with LPS. These PM\u03c8 exhibit impaired secretion of monocyte chemoattractant protein 1 (MCP-1) which is critical for directing monocyte migration to inflammation sites. Results provide insight into role of I\u03baB\u03b6 in M\u03c8 physiology.", "type": "Expression profiling by array", "pubmed_id": "23547114", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE43075", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4578", "description": "wildtype", "sample_id": [ "GSM1055989", "GSM1055990", "GSM1055992", "GSM1055994", "GSM1055995", "GSM1055997" ], "type": "genotype/variation", "id": "GDS4578_1" }, { "dataset_id": "GDS4578", "description": "Nfkbiz-/- knockout", "sample_id": [ "GSM1055999", "GSM1056001", "GSM1056003", "GSM1056004", "GSM1056006", "GSM1056008" ], "type": "genotype/variation", "id": "GDS4578_2" }, { "dataset_id": "GDS4578", "description": "lipopolysaccharide", "sample_id": [ "GSM1055989", "GSM1055990", "GSM1055992", "GSM1055999", "GSM1056001", "GSM1056003" ], "type": "protocol", "id": "GDS4578_3" }, { "dataset_id": "GDS4578", "description": "untreated", "sample_id": [ "GSM1055994", "GSM1055995", "GSM1055997", "GSM1056004", "GSM1056006", "GSM1056008" ], "type": "protocol", "id": "GDS4578_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4578", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4578.tab", "compression": "gz" } ], [ [ "GDS4579.tab" ], { "title": "Subchronic silicosis model: whole lung", "description": "Analysis of lung at 28 wk following subchronic silica inhalation exposure to occupationally relevant doses and particle sizes of aerosolized silica. Results provide insight into molecular events associated with chronic silicosis.", "type": "Expression profiling by array", "pubmed_id": "21830856", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE29110", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4579", "description": "chronic silica exposure", "sample_id": [ "GSM720966", "GSM720967", "GSM720968" ], "type": "protocol", "id": "GDS4579_1" }, { "dataset_id": "GDS4579", "description": "control", "sample_id": [ "GSM720963", "GSM720964", "GSM720965" ], "type": "protocol", "id": "GDS4579_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4579", "version": 1.0, "instances": "6", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4579.tab", "compression": "gz" } ], [ [ "GDS4580.tab" ], { "title": "Idiopathic pulmonary fibrosis: cultured lung fibroblasts", "description": "Analysis of lung fibroblasts from individuals with rapid or slow progressing idiopathic pulmonary fibrosis (IPF). Results provide insight into molecular mechanisms underlying the different degrees of", "type": "Expression profiling by array", "pubmed_id": "23565148", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE44723", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4580", "description": "normal control", "sample_id": [ "GSM1089616", "GSM1089617", "GSM1089618", "GSM1089620" ], "type": "disease state", "id": "GDS4580_1" }, { "dataset_id": "GDS4580", "description": "rapid progressing fibrosis", "sample_id": [ "GSM1089614", "GSM1089619", "GSM1089622", "GSM1089623" ], "type": "disease state", "id": "GDS4580_2" }, { "dataset_id": "GDS4580", "description": "slow progressing fibrosis", "sample_id": [ "GSM1089615", "GSM1089621", "GSM1089624", "GSM1089625", "GSM1089626", "GSM1089627" ], "type": "disease state", "id": "GDS4580_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4580", "version": 1.0, "instances": "14", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4580.tab", "compression": "gz" } ], [ [ "GDS4581.tab" ], { "title": "Pneumococcal polysaccharide serotype 3-lipopolysaccharide co-immunization effect on pneumonia infection: lung", "description": "Temporal analysis of lung from Streptococcus pneumoniae serotype 3 (ST 3)-infected BALB/c females with prior co-immunization with pneumococcal polysaccharide ST 3 and lipopolysaccharide. Results provide sight into molecular basis of attenuation of pneumonia severity by PPS3+LPS co-immunization.", "type": "Expression profiling by array", "pubmed_id": "23389932", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE45644", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4581", "description": "non-immunized", "sample_id": [ "GSM1111241", "GSM1111237", "GSM1111233", "GSM1111229", "GSM1111225" ], "type": "protocol", "id": "GDS4581_1" }, { "dataset_id": "GDS4581", "description": "immunized with vehicle", "sample_id": [ "GSM1111242", "GSM1111238", "GSM1111234", "GSM1111230", "GSM1111226" ], "type": "protocol", "id": "GDS4581_2" }, { "dataset_id": "GDS4581", "description": "co-immunized with PPS3 + LPS", "sample_id": [ "GSM1111240", "GSM1111236", "GSM1111232", "GSM1111228", "GSM1111239", "GSM1111235", "GSM1111231", "GSM1111227" ], "type": "protocol", "id": "GDS4581_3" }, { "dataset_id": "GDS4581", "description": "control", "sample_id": [ "GSM1111241", "GSM1111237", "GSM1111233", "GSM1111229", "GSM1111225" ], "type": "infection", "id": "GDS4581_4" }, { "dataset_id": "GDS4581", "description": "Streptococcus pneumoniae", "sample_id": [ "GSM1111242", "GSM1111238", "GSM1111234", "GSM1111230", "GSM1111226", "GSM1111240", "GSM1111236", "GSM1111232", "GSM1111228", "GSM1111239", "GSM1111235", "GSM1111231", "GSM1111227" ], "type": "infection", "id": "GDS4581_5" }, { "dataset_id": "GDS4581", "description": "48 hours", "sample_id": [ "GSM1111242", "GSM1111238", "GSM1111234", "GSM1111230", "GSM1111226", "GSM1111239", "GSM1111235", "GSM1111231", "GSM1111227", "GSM1111241", "GSM1111237", "GSM1111233", "GSM1111229", "GSM1111225" ], "type": "time", "id": "GDS4581_6" }, { "dataset_id": "GDS4581", "description": "7 days", "sample_id": [ "GSM1111240", "GSM1111236", "GSM1111232", "GSM1111228" ], "type": "time", "id": "GDS4581_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4581", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4581.tab", "compression": "gz" } ], [ [ "GDS4582.tab" ], { "title": "Lung response to infection with Staphylococcus aureus Hla-deficient isogenic mutant: time course", "description": "Analysis of lung from C57BL/6J females up to 24hrs post-infection with mutant S. aureus deficient in alpha-hemolysin (Hla). Hla is a pore-forming cytotoxin. Results provide insight into molecular mechanisms underlying the host response to Hla in the context of S. aureus infection.", "type": "Expression profiling by array", "pubmed_id": "22733574", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE38053", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4582", "description": "S. aureus Hla mutant", "sample_id": [ "GSM933061", "GSM933062", "GSM933063", "GSM933070", "GSM933071", "GSM933072" ], "type": "infection", "id": "GDS4582_1" }, { "dataset_id": "GDS4582", "description": "S. aureus wildtype", "sample_id": [ "GSM933073", "GSM933074", "GSM933075", "GSM933064", "GSM933065", "GSM933066" ], "type": "infection", "id": "GDS4582_2" }, { "dataset_id": "GDS4582", "description": "saline control", "sample_id": [ "GSM933058", "GSM933059", "GSM933060", "GSM933067", "GSM933068", "GSM933069" ], "type": "infection", "id": "GDS4582_3" }, { "dataset_id": "GDS4582", "description": "hour 4", "sample_id": [ "GSM933067", "GSM933068", "GSM933069", "GSM933070", "GSM933071", "GSM933072", "GSM933073", "GSM933074", "GSM933075" ], "type": "time", "id": "GDS4582_4" }, { "dataset_id": "GDS4582", "description": "hour 24", "sample_id": [ "GSM933058", "GSM933059", "GSM933060", "GSM933061", "GSM933062", "GSM933063", "GSM933064", "GSM933065", "GSM933066" ], "type": "time", "id": "GDS4582_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4582", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4582.tab", "compression": "gz" } ], [ [ "GDS4583.tab" ], { "title": "Leukemia inhibitory factor neutralization effect on E. coli pneumonia lung", "description": "Analysis of lung from C57BL/6 animals during E. coli pneumonia in the presence of neutralizing anti-leukemia inhibitory factor (LIF) antibody. Anti-LIF exacerbates lung injury. Results provide insight into molecular mechanisms underlying the pathophysiology of pneumonia.", "type": "Expression profiling by array", "pubmed_id": "22581855", "platform": "GPL11078", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21212", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE34901", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4583", "description": "control", "sample_id": [ "GSM857302", "GSM857303", "GSM857304" ], "type": "infection", "id": "GDS4583_1" }, { "dataset_id": "GDS4583", "description": "Escherichia coli", "sample_id": [ "GSM857305", "GSM857306", "GSM857307", "GSM857308", "GSM857309", "GSM857310" ], "type": "infection", "id": "GDS4583_2" }, { "dataset_id": "GDS4583", "description": "control IgG antibody", "sample_id": [ "GSM857302", "GSM857303", "GSM857304", "GSM857305", "GSM857306", "GSM857307" ], "type": "protocol", "id": "GDS4583_3" }, { "dataset_id": "GDS4583", "description": "anti-LIF antibody", "sample_id": [ "GSM857308", "GSM857309", "GSM857310" ], "type": "protocol", "id": "GDS4583_4" } ], "taxid": "10090", "genes": 21210, "aggregation_function": "mean", "name": "GDS4583", "version": 1.0, "instances": "9", "variables": 21213, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4583.tab", "compression": "gz" } ], [ [ "GDS4584.tab" ], { "title": "Alveolar type I cells deficient in sterol-response element-binding proteins inhibitor Insig1/2", "description": "Analysis of lung from Insig1/2\u0394/\u0394 animals. Insig1/2\u0394/\u0394 animals exhibit lung inflammation and airspace remodeling associated with lipid accumulation in alveolar type 2 cells. Results provide insight into role of SREBP in regulation of lipid metabolism in lung.", "type": "Expression profiling by array", "pubmed_id": "22267724", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE31797", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4584", "description": "Insig1flox/flox /Insig2-/- control", "sample_id": [ "GSM788602", "GSM788603", "GSM788604" ], "type": "genotype/variation", "id": "GDS4584_1" }, { "dataset_id": "GDS4584", "description": "Insig1\u0394/\u0394 /Insig2 -/- mutant", "sample_id": [ "GSM788631", "GSM788632", "GSM788637" ], "type": "genotype/variation", "id": "GDS4584_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4584", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4584.tab", "compression": "gz" } ], [ [ "GDS4585.tab" ], { "title": "Ozone effect on Toll-like receptor 4-deficient C3H/HeJ lung: time course", "description": "Analysis of lung from Toll-like receptor 4 (Tlr4)-deficient, C3H/HeJ males exposed to 0.3 ppm ozone (O3) for up to 48hr. Tlr4 is involved in O3-induced pulmonary hyperpermeability and inflammation. Results provide insight into the molecular basis of Tlr4 modulation of O3-induced pulmonary responses.", "type": "Expression profiling by array", "pubmed_id": "21543283", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE20715", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4585", "description": "control", "sample_id": [ "GSM519978", "GSM519977", "GSM519976", "GSM519990", "GSM519989", "GSM519988" ], "type": "time", "id": "GDS4585_1" }, { "dataset_id": "GDS4585", "description": "hour 6", "sample_id": [ "GSM519981", "GSM519980", "GSM519979", "GSM519993", "GSM519992", "GSM519991" ], "type": "time", "id": "GDS4585_2" }, { "dataset_id": "GDS4585", "description": "hour 24", "sample_id": [ "GSM519996", "GSM519995", "GSM519994", "GSM519984", "GSM519983", "GSM519982" ], "type": "time", "id": "GDS4585_3" }, { "dataset_id": "GDS4585", "description": "hour 48", "sample_id": [ "GSM519987", "GSM519986", "GSM519985", "GSM519999", "GSM519998", "GSM519997" ], "type": "time", "id": "GDS4585_4" }, { "dataset_id": "GDS4585", "description": "C3H/HeOuJ", "sample_id": [ "GSM519976", "GSM519977", "GSM519978", "GSM519979", "GSM519980", "GSM519981", "GSM519982", "GSM519983", "GSM519984", "GSM519985", "GSM519986", "GSM519987" ], "type": "strain", "id": "GDS4585_5" }, { "dataset_id": "GDS4585", "description": "C3H/HeJ", "sample_id": [ "GSM519988", "GSM519989", "GSM519990", "GSM519991", "GSM519992", "GSM519993", "GSM519994", "GSM519995", "GSM519996", "GSM519997", "GSM519998", "GSM519999" ], "type": "strain", "id": "GDS4585_6" }, { "dataset_id": "GDS4585", "description": "Tlr4 normal", "sample_id": [ "GSM519976", "GSM519977", "GSM519978", "GSM519979", "GSM519980", "GSM519981", "GSM519982", "GSM519983", "GSM519984", "GSM519985", "GSM519986", "GSM519987" ], "type": "genotype/variation", "id": "GDS4585_7" }, { "dataset_id": "GDS4585", "description": "Tlr4 mutant", "sample_id": [ "GSM519988", "GSM519989", "GSM519990", "GSM519991", "GSM519992", "GSM519993", "GSM519994", "GSM519995", "GSM519996", "GSM519997", "GSM519998", "GSM519999" ], "type": "genotype/variation", "id": "GDS4585_8" }, { "dataset_id": "GDS4585", "description": "air", "sample_id": [ "GSM519978", "GSM519977", "GSM519976", "GSM519990", "GSM519989", "GSM519988" ], "type": "agent", "id": "GDS4585_9" }, { "dataset_id": "GDS4585", "description": "ozone", "sample_id": [ "GSM519981", "GSM519980", "GSM519979", "GSM519987", "GSM519986", "GSM519985", "GSM519984", "GSM519983", "GSM519982", "GSM519993", "GSM519992", "GSM519991", "GSM519999", "GSM519998", "GSM519997", "GSM519996", "GSM519995", "GSM519994" ], "type": "agent", "id": "GDS4585_10" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4585", "version": 1.0, "instances": "24", "variables": 13881, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4585.tab", "compression": "gz" } ], [ [ "GDS4586.tab" ], { "title": "Ozone effect on Interleukin-10 deficient lung: time course", "description": "Analysis of lung from interleukin-10 (IL10)-/- mutant males exposed to 0.3 ppm ozone (O3) for up to 72hr. Results provide insight into molecular mechanisms underlying the protective role of IL10 in O3-induced pulmonary inflammation.", "type": "Expression profiling by array", "pubmed_id": "20826374", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE25095", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4586", "description": "24 hrs", "sample_id": [ "GSM616461", "GSM616462", "GSM616463", "GSM616464", "GSM616465", "GSM616468", "GSM616469", "GSM616470", "GSM616466", "GSM616467" ], "type": "time", "id": "GDS4586_1" }, { "dataset_id": "GDS4586", "description": "48 hrs", "sample_id": [ "GSM616471", "GSM616472", "GSM616473", "GSM616474", "GSM616475", "GSM616476", "GSM616477", "GSM616478", "GSM616479", "GSM616480" ], "type": "time", "id": "GDS4586_2" }, { "dataset_id": "GDS4586", "description": "72 hrs", "sample_id": [ "GSM616484", "GSM616485", "GSM616486", "GSM616481", "GSM616482", "GSM616483" ], "type": "time", "id": "GDS4586_3" }, { "dataset_id": "GDS4586", "description": "C57BL/6", "sample_id": [ "GSM616461", "GSM616462", "GSM616463", "GSM616464", "GSM616465", "GSM616471", "GSM616472", "GSM616473", "GSM616474", "GSM616475", "GSM616484", "GSM616485", "GSM616486" ], "type": "strain", "id": "GDS4586_4" }, { "dataset_id": "GDS4586", "description": "B6.129P2-Il10tmlCgn/J", "sample_id": [ "GSM616466", "GSM616467", "GSM616468", "GSM616469", "GSM616470", "GSM616476", "GSM616477", "GSM616478", "GSM616479", "GSM616480", "GSM616481", "GSM616482", "GSM616483" ], "type": "strain", "id": "GDS4586_5" }, { "dataset_id": "GDS4586", "description": "Il10+/+", "sample_id": [ "GSM616461", "GSM616462", "GSM616463", "GSM616464", "GSM616465", "GSM616471", "GSM616472", "GSM616473", "GSM616474", "GSM616475", "GSM616484", "GSM616485", "GSM616486" ], "type": "genotype/variation", "id": "GDS4586_6" }, { "dataset_id": "GDS4586", "description": "Il10-/-", "sample_id": [ "GSM616466", "GSM616467", "GSM616468", "GSM616469", "GSM616470", "GSM616476", "GSM616477", "GSM616478", "GSM616479", "GSM616480", "GSM616481", "GSM616482", "GSM616483" ], "type": "genotype/variation", "id": "GDS4586_7" }, { "dataset_id": "GDS4586", "description": "air", "sample_id": [ "GSM616461", "GSM616462", "GSM616466", "GSM616467", "GSM616471", "GSM616472", "GSM616476", "GSM616477" ], "type": "agent", "id": "GDS4586_8" }, { "dataset_id": "GDS4586", "description": "ozone", "sample_id": [ "GSM616463", "GSM616464", "GSM616465", "GSM616468", "GSM616469", "GSM616470", "GSM616473", "GSM616474", "GSM616475", "GSM616478", "GSM616479", "GSM616480", "GSM616481", "GSM616482", "GSM616483", "GSM616484", "GSM616485", "GSM616486" ], "type": "agent", "id": "GDS4586_9" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4586", "version": 1.0, "instances": "26", "variables": 13881, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4586.tab", "compression": "gz" } ], [ [ "GDS4587.tab" ], { "title": "UCSF sarcoidosis and hypersensitivity pneumonitis cohort: peripheral blood mononuclear cells", "description": "Analysis of whole blood from sarcoidosis and hypersensitivity pneumonitis patients. Results provide insight into molecular mechanisms underlying sarcoidosis and hypersensitivity pneumonitis in peripheral blood.", "type": "Expression profiling by array", "pubmed_id": [ "21852540", "25142485" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "66", "value_type": "transformed count", "reference_series": "GSE19314", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4587", "description": "sarcoidosis", "sample_id": [ "GSM479917", "GSM479920", "GSM479924", "GSM479926", "GSM479927", "GSM479931", "GSM479932", "GSM479933", "GSM479934", "GSM479935", "GSM479942", "GSM479943", "GSM479944", "GSM479945", "GSM479946", "GSM479949", "GSM479951", "GSM479952", "GSM479953", "GSM479956", "GSM479957", "GSM479959", "GSM479960", "GSM479961", "GSM479962", "GSM479963", "GSM479964", "GSM479965", "GSM479968", "GSM479969", "GSM479971", "GSM479972", "GSM479973", "GSM479974", "GSM479977", "GSM479979", "GSM479980", "GSM479981" ], "type": "disease state", "id": "GDS4587_1" }, { "dataset_id": "GDS4587", "description": "hypersensitivity pneumonitis", "sample_id": [ "GSM479918", "GSM479929", "GSM479930", "GSM479938", "GSM479950", "GSM479955" ], "type": "disease state", "id": "GDS4587_2" }, { "dataset_id": "GDS4587", "description": "healthy", "sample_id": [ "GSM479919", "GSM479921", "GSM479922", "GSM479923", "GSM479925", "GSM479928", "GSM479936", "GSM479937", "GSM479939", "GSM479940", "GSM479941", "GSM479947", "GSM479948", "GSM479954", "GSM479958", "GSM479966", "GSM479967", "GSM479970", "GSM479975", "GSM479976" ], "type": "disease state", "id": "GDS4587_3" }, { "dataset_id": "GDS4587", "description": "sarcoidosis-associated hepatitis C virus infection", "sample_id": [ "GSM479982" ], "type": "disease state", "id": "GDS4587_4" }, { "dataset_id": "GDS4587", "description": "bronchiolitis obliterans", "sample_id": [ "GSM479978" ], "type": "disease state", "id": "GDS4587_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4587", "version": 1.0, "instances": "66", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4587.tab", "compression": "gz" } ], [ [ "GDS4588.tab" ], { "title": "APC\u0394468 model of polyposis: regulatory T cells from various organs", "description": "Analysis of T-regulatory cells (Treg) from various organs (small intestine, spleen, mesenteric lymph node) of polyp-ridden Foxp3-GFPxAPC\u0394468 reporter males. Tregs from the polyposis model promote cancer. Results provide insight into molecular mechanisms underlying these pathogenic Tregs.", "type": "Expression profiling by array", "pubmed_id": [ "23241743", "24574339" ], "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE41229", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4588", "description": "small intestine", "sample_id": [ "GSM1011468", "GSM1011469", "GSM1011477", "GSM1011478", "GSM1011482", "GSM1011497", "GSM1011498", "GSM1011466", "GSM1011467", "GSM1011499" ], "type": "tissue", "id": "GDS4588_1" }, { "dataset_id": "GDS4588", "description": "small intestine surrounding polyps", "sample_id": [ "GSM1011489", "GSM1011504", "GSM1011476", "GSM1011490", "GSM1011505" ], "type": "tissue", "id": "GDS4588_2" }, { "dataset_id": "GDS4588", "description": "small intestine polyp", "sample_id": [ "GSM1011475", "GSM1011487", "GSM1011506", "GSM1011474", "GSM1011488", "GSM1011507" ], "type": "tissue", "id": "GDS4588_3" }, { "dataset_id": "GDS4588", "description": "spleen", "sample_id": [ "GSM1011479", "GSM1011494", "GSM1011495", "GSM1011480", "GSM1011496", "GSM1011473", "GSM1011484", "GSM1011502", "GSM1011472", "GSM1011483", "GSM1011503" ], "type": "tissue", "id": "GDS4588_4" }, { "dataset_id": "GDS4588", "description": "mesenteric lymph node", "sample_id": [ "GSM1011465", "GSM1011491", "GSM1011492", "GSM1011481", "GSM1011493", "GSM1011464", "GSM1011471", "GSM1011486", "GSM1011500", "GSM1011470", "GSM1011485", "GSM1011501" ], "type": "tissue", "id": "GDS4588_5" }, { "dataset_id": "GDS4588", "description": "Foxp3-GFP", "sample_id": [ "GSM1011465", "GSM1011491", "GSM1011492", "GSM1011481", "GSM1011493", "GSM1011464", "GSM1011468", "GSM1011469", "GSM1011477", "GSM1011478", "GSM1011482", "GSM1011497", "GSM1011498", "GSM1011466", "GSM1011467", "GSM1011499", "GSM1011479", "GSM1011494", "GSM1011495", "GSM1011480", "GSM1011496" ], "type": "genotype/variation", "id": "GDS4588_6" }, { "dataset_id": "GDS4588", "description": "Foxp3-GFPxAPC\u0394468", "sample_id": [ "GSM1011471", "GSM1011486", "GSM1011500", "GSM1011470", "GSM1011485", "GSM1011501", "GSM1011475", "GSM1011487", "GSM1011506", "GSM1011474", "GSM1011488", "GSM1011507", "GSM1011489", "GSM1011504", "GSM1011476", "GSM1011490", "GSM1011505", "GSM1011473", "GSM1011484", "GSM1011502", "GSM1011472", "GSM1011483", "GSM1011503" ], "type": "genotype/variation", "id": "GDS4588_7" }, { "dataset_id": "GDS4588", "description": "CD4+ non-Treg", "sample_id": [ "GSM1011465", "GSM1011491", "GSM1011492", "GSM1011468", "GSM1011469", "GSM1011477", "GSM1011478", "GSM1011482", "GSM1011497", "GSM1011498", "GSM1011479", "GSM1011494", "GSM1011495", "GSM1011471", "GSM1011486", "GSM1011500", "GSM1011473", "GSM1011484", "GSM1011502", "GSM1011475", "GSM1011487", "GSM1011506", "GSM1011489", "GSM1011504" ], "type": "cell type", "id": "GDS4588_8" }, { "dataset_id": "GDS4588", "description": "Treg", "sample_id": [ "GSM1011464", "GSM1011481", "GSM1011493", "GSM1011466", "GSM1011467", "GSM1011499", "GSM1011480", "GSM1011496", "GSM1011470", "GSM1011485", "GSM1011501", "GSM1011472", "GSM1011483", "GSM1011503", "GSM1011474", "GSM1011488", "GSM1011507", "GSM1011476", "GSM1011490", "GSM1011505" ], "type": "cell type", "id": "GDS4588_9" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4588", "version": 1.0, "instances": "44", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4588.tab", "compression": "gz" } ], [ [ "GDS4589.tab" ], { "title": "Stage I endometrial cancer: microdissected frozen uterine tumors", "description": "Analysis of stage I endometrial cancers (representing endometrioid and papillary serous histologic subtypes) with a heterogeneous distribution of grade and stage/depth of myometrial invasion. Results provide insight into molecular mechanisms underlying early endometrial cancer histological types.", "type": "Expression profiling by array", "pubmed_id": "21619611", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "103", "value_type": "count", "reference_series": "GSE17025", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4589", "description": "stage I endometrial cancer", "sample_id": [ "GSM425837", "GSM425838", "GSM425839", "GSM425840", "GSM425841", "GSM425842", "GSM425843", "GSM425844", "GSM425845", "GSM425846", "GSM425847", "GSM425848", "GSM425849", "GSM425850", "GSM425851", "GSM425852", "GSM425853", "GSM425854", "GSM425855", "GSM425856", "GSM425857", "GSM425858", "GSM425859", "GSM425860", "GSM425861", "GSM425862", "GSM425863", "GSM425864", "GSM425865", "GSM425866", "GSM425867", "GSM425868", "GSM425869", "GSM425870", "GSM425871", "GSM425872", "GSM425873", "GSM425874", "GSM425875", "GSM425876", "GSM425877", "GSM425878", "GSM425879", "GSM425880", "GSM425881", "GSM425882", "GSM425883", "GSM425884", "GSM425885", "GSM425886", "GSM425887", "GSM425888", "GSM425889", "GSM425890", "GSM425891", "GSM425892", "GSM425893", "GSM425894", "GSM425895", "GSM425896", "GSM425897", "GSM425898", "GSM425899", "GSM425900", "GSM425901", "GSM425902", "GSM425903", "GSM425904", "GSM425905", "GSM425906", "GSM425907", "GSM425908", "GSM425909", "GSM425910", "GSM425911", "GSM425912", "GSM425913", "GSM425914", "GSM425915", "GSM425916", "GSM425917", "GSM425918", "GSM425919", "GSM425920", "GSM425921", "GSM425922", "GSM425923", "GSM425924", "GSM425925", "GSM425926", "GSM425927" ], "type": "disease state", "id": "GDS4589_1" }, { "dataset_id": "GDS4589", "description": "postmenopausal healthy", "sample_id": [ "GSM425928", "GSM425929", "GSM425930", "GSM425931", "GSM425932", "GSM425933", "GSM425934", "GSM425935", "GSM425936", "GSM425937", "GSM425938", "GSM425939" ], "type": "disease state", "id": "GDS4589_2" }, { "dataset_id": "GDS4589", "description": "endometrioid tumor", "sample_id": [ "GSM425837", "GSM425838", "GSM425839", "GSM425840", "GSM425841", "GSM425842", "GSM425843", "GSM425844", "GSM425845", "GSM425846", "GSM425847", "GSM425848", "GSM425849", "GSM425850", "GSM425851", "GSM425852", "GSM425853", "GSM425854", "GSM425855", "GSM425856", "GSM425857", "GSM425858", "GSM425859", "GSM425860", "GSM425861", "GSM425862", "GSM425863", "GSM425864", "GSM425865", "GSM425866", "GSM425867", "GSM425868", "GSM425869", "GSM425870", "GSM425871", "GSM425872", "GSM425873", "GSM425874", "GSM425875", "GSM425876", "GSM425877", "GSM425878", "GSM425879", "GSM425880", "GSM425881", "GSM425882", "GSM425883", "GSM425884", "GSM425885", "GSM425886", "GSM425887", "GSM425888", "GSM425889", "GSM425890", "GSM425891", "GSM425892", "GSM425893", "GSM425894", "GSM425895", "GSM425896", "GSM425897", "GSM425898", "GSM425899", "GSM425900", "GSM425901", "GSM425902", "GSM425903", "GSM425904", "GSM425905", "GSM425906", "GSM425907", "GSM425908", "GSM425909", "GSM425910", "GSM425911", "GSM425912", "GSM425913", "GSM425914", "GSM425915" ], "type": "tissue", "id": "GDS4589_3" }, { "dataset_id": "GDS4589", "description": "papillary serous tumor", "sample_id": [ "GSM425916", "GSM425917", "GSM425918", "GSM425919", "GSM425920", "GSM425921", "GSM425922", "GSM425923", "GSM425924", "GSM425925", "GSM425926", "GSM425927" ], "type": "tissue", "id": "GDS4589_4" }, { "dataset_id": "GDS4589", "description": "inactive endometrium", "sample_id": [ "GSM425928", "GSM425929", "GSM425930", "GSM425931", "GSM425932", "GSM425933", "GSM425934", "GSM425935", "GSM425936", "GSM425937", "GSM425938", "GSM425939" ], "type": "tissue", "id": "GDS4589_5" }, { "dataset_id": "GDS4589", "description": "stage-grade: IA-G1", "sample_id": [ "GSM425908", "GSM425912", "GSM425907", "GSM425909", "GSM425910", "GSM425911", "GSM425913", "GSM425914", "GSM425915" ], "type": "other", "id": "GDS4589_6" }, { "dataset_id": "GDS4589", "description": "stage-grade: IA-G2", "sample_id": [ "GSM425876", "GSM425877", "GSM425878", "GSM425879", "GSM425884", "GSM425874", "GSM425875", "GSM425880", "GSM425881", "GSM425882", "GSM425883", "GSM425885", "GSM425917", "GSM425922" ], "type": "other", "id": "GDS4589_7" }, { "dataset_id": "GDS4589", "description": "stage-grade: IA-G3", "sample_id": [ "GSM425848", "GSM425849", "GSM425850", "GSM425851", "GSM425852", "GSM425920", "GSM425919" ], "type": "other", "id": "GDS4589_8" }, { "dataset_id": "GDS4589", "description": "stage-grade: IB-G1", "sample_id": [ "GSM425893", "GSM425895", "GSM425896", "GSM425897", "GSM425898", "GSM425899", "GSM425900", "GSM425901", "GSM425902", "GSM425903", "GSM425904", "GSM425905", "GSM425906", "GSM425894" ], "type": "other", "id": "GDS4589_9" }, { "dataset_id": "GDS4589", "description": "stage-grade: IB-G2", "sample_id": [ "GSM425871", "GSM425863", "GSM425864", "GSM425865", "GSM425866", "GSM425867", "GSM425868", "GSM425870", "GSM425872", "GSM425873", "GSM425869", "GSM425923" ], "type": "other", "id": "GDS4589_10" }, { "dataset_id": "GDS4589", "description": "stage-grade: IB-G3", "sample_id": [ "GSM425847", "GSM425843", "GSM425844", "GSM425845", "GSM425846", "GSM425916", "GSM425925", "GSM425926", "GSM425927", "GSM425918", "GSM425921" ], "type": "other", "id": "GDS4589_11" }, { "dataset_id": "GDS4589", "description": "stage-grade: IC-G1", "sample_id": [ "GSM425886", "GSM425887", "GSM425888", "GSM425889", "GSM425890", "GSM425891", "GSM425892" ], "type": "other", "id": "GDS4589_12" }, { "dataset_id": "GDS4589", "description": "stage-grade: IC-G2", "sample_id": [ "GSM425854", "GSM425855", "GSM425859", "GSM425860", "GSM425853", "GSM425856", "GSM425857", "GSM425858", "GSM425861", "GSM425862" ], "type": "other", "id": "GDS4589_13" }, { "dataset_id": "GDS4589", "description": "stage-grade: IC-G3", "sample_id": [ "GSM425837", "GSM425838", "GSM425839", "GSM425840", "GSM425841", "GSM425842" ], "type": "other", "id": "GDS4589_14" }, { "dataset_id": "GDS4589", "description": "stage-grade: I-G3", "sample_id": [ "GSM425924" ], "type": "other", "id": "GDS4589_15" }, { "dataset_id": "GDS4589", "description": "stage-grade: n/a", "sample_id": [ "GSM425930", "GSM425939", "GSM425928", "GSM425929", "GSM425931", "GSM425932", "GSM425933", "GSM425934", "GSM425935", "GSM425936", "GSM425937", "GSM425938" ], "type": "other", "id": "GDS4589_16" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4589", "version": 1.0, "instances": "103", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4589.tab", "compression": "gz" } ], [ [ "GDS4590.tab" ], { "title": "Maternal diabetes effect on E10.5 embryos", "description": "Analysis of embryonic day 10.5 (E10.5) embryos collected from streptozotocin-induced diabetic FVB females. Maternal diabetes is a known risk factor for birth defects. Results provide insight into molecular mechanisms underlying developmental abnormalities of embryos of diabetic pregnancies.", "type": "Expression profiling by array", "pubmed_id": "19538749", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE41095", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4590", "description": "control pregnancy", "sample_id": [ "GSM1008501", "GSM1008502", "GSM1008503" ], "type": "protocol", "id": "GDS4590_1" }, { "dataset_id": "GDS4590", "description": "diabetic pregnancy", "sample_id": [ "GSM1008504", "GSM1008505", "GSM1008506" ], "type": "protocol", "id": "GDS4590_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4590", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4590.tab", "compression": "gz" } ], [ [ "GDS4591.tab" ], { "title": "Microchimeric fetal cells isolated from maternal lung during late pregnancy", "description": "Analysis of fetal cells collected from C57BL/6J maternal lung in late stages of pregnancy. During pregnancy, fetal cells enter maternal circulation and organs leading to microchimerism. Results provide insight into the microchimeric cell types and the mechanisms by which they affect maternal health.", "type": "Expression profiling by array", "pubmed_id": "22674387", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE38188", "order": "ordered", "update_date": "Jun 01 2015", "subsets": [ { "dataset_id": "GDS4591", "description": "E14", "sample_id": [ "GSM936403", "GSM936404" ], "type": "age", "id": "GDS4591_1" }, { "dataset_id": "GDS4591", "description": "E15", "sample_id": [ "GSM936405" ], "type": "age", "id": "GDS4591_2" }, { "dataset_id": "GDS4591", "description": "E16", "sample_id": [ "GSM936402" ], "type": "age", "id": "GDS4591_3" }, { "dataset_id": "GDS4591", "description": "E17.5", "sample_id": [ "GSM936400", "GSM936401", "GSM936406" ], "type": "age", "id": "GDS4591_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4591", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4591.tab", "compression": "gz" } ], [ [ "GDS4592.tab" ], { "title": "Antiphospholipid antibody effect on first-trimester placental explants", "description": "Analysis of first-trimester placenta explants treated with antiphospholipid antibodies. Antiphospholipid antibodies are a maternal risk factor for preeclampsia. Results provide insight into molecular mechanisms underlying antiphospholipid antibody involvement in preeclampsia pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "22542907", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE36083", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4592", "description": "antiphospholipid antibody", "sample_id": [ "GSM880867", "GSM880869", "GSM880871" ], "type": "protocol", "id": "GDS4592_1" }, { "dataset_id": "GDS4592", "description": "untreated", "sample_id": [ "GSM880866", "GSM880868", "GSM880870" ], "type": "protocol", "id": "GDS4592_2" }, { "dataset_id": "GDS4592", "description": "8 weeks gestation", "sample_id": [ "GSM880866", "GSM880867" ], "type": "development stage", "id": "GDS4592_3" }, { "dataset_id": "GDS4592", "description": "8.1 weeks gestation", "sample_id": [ "GSM880868", "GSM880869" ], "type": "development stage", "id": "GDS4592_4" }, { "dataset_id": "GDS4592", "description": "8.5 weeks gestation", "sample_id": [ "GSM880870", "GSM880871" ], "type": "development stage", "id": "GDS4592_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4592", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4592.tab", "compression": "gz" } ], [ [ "GDS4593.tab" ], { "title": "Dystocic myometrium", "description": "Analysis of myometrial biopsies obtained from the lower uterine segment in nulliparous Caucasian women undergoing cesarean section for dystocia (slow progressing labor). Results provide insight into the molecular mechanisms underlying dystocia in nulliparous women in spontaneous labor.", "type": "Expression profiling by array", "pubmed_id": "21999197", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE32178", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4593", "description": "dystocic myometrium", "sample_id": [ "GSM797580", "GSM797581", "GSM797582", "GSM797583" ], "type": "tissue", "id": "GDS4593_1" }, { "dataset_id": "GDS4593", "description": "control", "sample_id": [ "GSM797584", "GSM797585", "GSM797586", "GSM797587" ], "type": "tissue", "id": "GDS4593_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4593", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4593.tab", "compression": "gz" } ], [ [ "GDS4594.tab" ], { "title": "Diabetic pregnancy effect on embryonic heart development", "description": "Analysis of pooled E13.5 or E15.5 embryonic heart tissues from diabetic dams. Congenital heart defects (CHD) are one of the most common defects in offspring of diabetic mothers. Results provide insight into molecular changes in embryonic heart contributing to CHD offspring of diabetic pregnancies.", "type": "Expression profiling by array", "pubmed_id": "23287646", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE32078", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4594", "description": "control", "sample_id": [ "GSM795343", "GSM795344", "GSM795348", "GSM795349", "GSM795350", "GSM795342" ], "type": "disease state", "id": "GDS4594_1" }, { "dataset_id": "GDS4594", "description": "maternal diabetes", "sample_id": [ "GSM795345", "GSM795346", "GSM795347", "GSM795351", "GSM795352", "GSM795353" ], "type": "disease state", "id": "GDS4594_2" }, { "dataset_id": "GDS4594", "description": "embryonic day 13.5", "sample_id": [ "GSM795342", "GSM795343", "GSM795344", "GSM795345", "GSM795346", "GSM795347" ], "type": "age", "id": "GDS4594_3" }, { "dataset_id": "GDS4594", "description": "embryonic day 15.5", "sample_id": [ "GSM795348", "GSM795349", "GSM795350", "GSM795351", "GSM795352", "GSM795353" ], "type": "age", "id": "GDS4594_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4594", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4594.tab", "compression": "gz" } ], [ [ "GDS4595.tab" ], { "title": "Inflammatory amnion mesenchymal cell model response to interleukin-1\u03b2: time course", "description": "Analysis of monolayer cultures of amnion mesenchymal cells (AMC) following interleukin-1\u03b2 challenge for up to 8 hrs. These AMCs represent an in vitro model system by which to study the inflammatory component of labor. Results provide insight into molecular response of AMCs to cytokine challenge.", "type": "Expression profiling by array", "pubmed_id": "21655103", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE26315", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4595", "description": "control", "sample_id": [ "GSM646173", "GSM646174", "GSM646175" ], "type": "agent", "id": "GDS4595_1" }, { "dataset_id": "GDS4595", "description": "interleukin-1\u03b2", "sample_id": [ "GSM646176", "GSM646177", "GSM646178", "GSM646179", "GSM646180", "GSM646181" ], "type": "agent", "id": "GDS4595_2" }, { "dataset_id": "GDS4595", "description": "control", "sample_id": [ "GSM646173", "GSM646174", "GSM646175" ], "type": "time", "id": "GDS4595_3" }, { "dataset_id": "GDS4595", "description": "hour 1", "sample_id": [ "GSM646176", "GSM646177", "GSM646178" ], "type": "time", "id": "GDS4595_4" }, { "dataset_id": "GDS4595", "description": "hour 8", "sample_id": [ "GSM646179", "GSM646180", "GSM646181" ], "type": "time", "id": "GDS4595_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4595", "version": 1.0, "instances": "9", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4595.tab", "compression": "gz" } ], [ [ "GDS4596.tab" ], { "title": "Colorectal cancer cell line SW480 response to Snail overexpression", "description": "Analysis of SW480 CRC cells stably overexpressing Snail, an EMT activator highly expressed in CRC colonospheres. SW480-Snail cells display most properties of colonospheres, including cell dedifferentiation. Results provide insight into molecular mechanisms underlying EMT-related malignancy.", "type": "Expression profiling by array", "pubmed_id": "21640118", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE14773", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4596", "description": "Snail", "sample_id": [ "GSM368868", "GSM368869" ], "type": "genotype/variation", "id": "GDS4596_1" }, { "dataset_id": "GDS4596", "description": "control", "sample_id": [ "GSM368866", "GSM368867" ], "type": "genotype/variation", "id": "GDS4596_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4596", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4596.tab", "compression": "gz" } ], [ [ "GDS4597.tab" ], { "title": "In vitro model for inflammatory dendritic cells", "description": "Analysis of an in vitro model of peptidoglycan-activated monocytes as inflammatory myeloid dendritic cells (DCs). DCs are thought to have an important role in the pathogenesis of inflammatory skin lesions such as psoriasis. Results provide insight into molecular basis of psoriasis pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "23407402", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE42305", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4597", "description": "control", "sample_id": [ "GSM1038141", "GSM1038142", "GSM1038143" ], "type": "agent", "id": "GDS4597_1" }, { "dataset_id": "GDS4597", "description": "heat-killed L. monocytogenes", "sample_id": [ "GSM1038144", "GSM1038145", "GSM1038146" ], "type": "agent", "id": "GDS4597_2" }, { "dataset_id": "GDS4597", "description": "peptidoglycan", "sample_id": [ "GSM1038147", "GSM1038148", "GSM1038149" ], "type": "agent", "id": "GDS4597_3" }, { "dataset_id": "GDS4597", "description": "\u03b2-defensin-2", "sample_id": [ "GSM1038150", "GSM1038151", "GSM1038152" ], "type": "agent", "id": "GDS4597_4" }, { "dataset_id": "GDS4597", "description": "\u03b2-defensin-3", "sample_id": [ "GSM1038153", "GSM1038154", "GSM1038155" ], "type": "agent", "id": "GDS4597_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4597", "version": 1.0, "instances": "15", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4597.tab", "compression": "gz" } ], [ [ "GDS4598.tab" ], { "title": "Keratinocyte response to endogenous microRNA-31 inhibition", "description": "Analysis of keratinocytes transfected with microR-31 (miR-31) hairpin inhibitor for 48hrs. MiR-31 is one of the most highly overexpressed miRNAs in psoriasis skin. Results provide insight into the biological role of miR-31 in keratinocytes.", "type": "Expression profiling by array", "pubmed_id": "23233723", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE41905", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4598", "description": "miR-31 inhibition", "sample_id": [ "GSM1027205", "GSM1027206", "GSM1027207" ], "type": "protocol", "id": "GDS4598_1" }, { "dataset_id": "GDS4598", "description": "control", "sample_id": [ "GSM1027208", "GSM1027209", "GSM1027210" ], "type": "protocol", "id": "GDS4598_2" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS4598", "version": 1.0, "instances": "6", "variables": 26598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4598.tab", "compression": "gz" } ], [ [ "GDS4599.tab" ], { "title": "ZNF750 silencing effect on differentiated keratinocytes", "description": "Analysis of ZNF750-silenced HaCaT keratinocytes (KCs) at day 12 of calcium-induced differentiation. ZNF750 knockdown in HaCaT KCs leads to sustained cell proliferation and decreased apoptosis. Results provide insight into molecular mechanisms underlying keratinocyte terminal differentiation.", "type": "Expression profiling by array", "pubmed_id": "22936986", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE38039", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4599", "description": "ZNF750 silencing", "sample_id": [ "GSM932866", "GSM932867", "GSM932868" ], "type": "protocol", "id": "GDS4599_1" }, { "dataset_id": "GDS4599", "description": "control", "sample_id": [ "GSM932863", "GSM932864", "GSM932865" ], "type": "protocol", "id": "GDS4599_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4599", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4599.tab", "compression": "gz" } ], [ [ "GDS46.tab" ], { "title": "E2F1-regulated genes", "description": "Identification of E2F1-regulated genes that modulate the transition from quiescence into DNA synthesis, or have roles in apoptosis, signal transduction, membrane biology, and transcription repression.", "type": "Expression profiling by array", "pubmed_id": "11888208", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE498", "order": "none", "update_date": "Jul 01 2003", "subsets": [ { "dataset_id": "GDS46", "description": "E2F1 expressing adenovirus", "sample_id": [ "GSM820", "GSM823" ], "type": "protocol", "id": "GDS46_1" }, { "dataset_id": "GDS46", "description": "control", "sample_id": [ "GSM821", "GSM822" ], "type": "protocol", "id": "GDS46_2" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS46", "version": 1.0, "instances": "4", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS46.tab", "compression": "gz" } ], [ [ "GDS4600.tab" ], { "title": "Psoriasis vulgaris ACCEPT cohort: paired lesional and non-lesional skin", "description": "Analysis of 85 paired lesional and non-lesional samples from moderate-to-severe psoriasis patients at baseline without active psoriasis therapy. Results provide insight into the molecular mechanisms underlying psoriasis.", "type": "Expression profiling by array", "pubmed_id": "22763790", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "170", "value_type": "transformed count", "reference_series": "GSE30999", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4600", "description": "pair 1019-01", "sample_id": [ "GSM767976", "GSM767977" ], "type": "other", "id": "GDS4600_1" }, { "dataset_id": "GDS4600", "description": "pair 1019-13", "sample_id": [ "GSM767978", "GSM767979" ], "type": "other", "id": "GDS4600_2" }, { "dataset_id": "GDS4600", "description": "pair 1012-02", "sample_id": [ "GSM767980", "GSM767981" ], "type": "other", "id": "GDS4600_3" }, { "dataset_id": "GDS4600", "description": "pair 2016-13", "sample_id": [ "GSM767982", "GSM767983" ], "type": "other", "id": "GDS4600_4" }, { "dataset_id": "GDS4600", "description": "pair 2016-18", "sample_id": [ "GSM767984", "GSM767985" ], "type": "other", "id": "GDS4600_5" }, { "dataset_id": "GDS4600", "description": "pair 1025-08", "sample_id": [ "GSM767989", "GSM767990" ], "type": "other", "id": "GDS4600_6" }, { "dataset_id": "GDS4600", "description": "pair 1025-09", "sample_id": [ "GSM767991", "GSM767992" ], "type": "other", "id": "GDS4600_7" }, { "dataset_id": "GDS4600", "description": "pair 2015-12", "sample_id": [ "GSM767993", "GSM767994" ], "type": "other", "id": "GDS4600_8" }, { "dataset_id": "GDS4600", "description": "pair 2015-14", "sample_id": [ "GSM767995", "GSM767996" ], "type": "other", "id": "GDS4600_9" }, { "dataset_id": "GDS4600", "description": "pair 2012-38", "sample_id": [ "GSM767997", "GSM767998" ], "type": "other", "id": "GDS4600_10" }, { "dataset_id": "GDS4600", "description": "pair 1016-13", "sample_id": [ "GSM768000", "GSM768001" ], "type": "other", "id": "GDS4600_11" }, { "dataset_id": "GDS4600", "description": "pair 1012-08", "sample_id": [ "GSM768003", "GSM768004" ], "type": "other", "id": "GDS4600_12" }, { "dataset_id": "GDS4600", "description": "pair 1025-06", "sample_id": [ "GSM768005", "GSM768006" ], "type": "other", "id": "GDS4600_13" }, { "dataset_id": "GDS4600", "description": "pair 1022-03", "sample_id": [ "GSM768007", "GSM768008" ], "type": "other", "id": "GDS4600_14" }, { "dataset_id": "GDS4600", "description": "pair 1022-05", "sample_id": [ "GSM768009", "GSM768010" ], "type": "other", "id": "GDS4600_15" }, { "dataset_id": "GDS4600", "description": "pair 1022-12", "sample_id": [ "GSM768011", "GSM768012" ], "type": "other", "id": "GDS4600_16" }, { "dataset_id": "GDS4600", "description": "pair 1022-14", "sample_id": [ "GSM768013", "GSM768014" ], "type": "other", "id": "GDS4600_17" }, { "dataset_id": "GDS4600", "description": "pair 1022-26", "sample_id": [ "GSM768017", "GSM768018" ], "type": "other", "id": "GDS4600_18" }, { "dataset_id": "GDS4600", "description": "pair 2012-19", "sample_id": [ "GSM768019", "GSM768020" ], "type": "other", "id": "GDS4600_19" }, { "dataset_id": "GDS4600", "description": "pair 2012-34", "sample_id": [ "GSM768021", "GSM768022" ], "type": "other", "id": "GDS4600_20" }, { "dataset_id": "GDS4600", "description": "pair 1019-09", "sample_id": [ "GSM768023", "GSM768024" ], "type": "other", "id": "GDS4600_21" }, { "dataset_id": "GDS4600", "description": "pair 2015-02", "sample_id": [ "GSM768015", "GSM768016" ], "type": "other", "id": "GDS4600_22" }, { "dataset_id": "GDS4600", "description": "pair 1019-07", "sample_id": [ "GSM768025", "GSM768026" ], "type": "other", "id": "GDS4600_23" }, { "dataset_id": "GDS4600", "description": "pair 1016-03", "sample_id": [ "GSM768027", "GSM768028" ], "type": "other", "id": "GDS4600_24" }, { "dataset_id": "GDS4600", "description": "pair 1012-01", "sample_id": [ "GSM768029", "GSM768030" ], "type": "other", "id": "GDS4600_25" }, { "dataset_id": "GDS4600", "description": "pair 1012-07", "sample_id": [ "GSM768031", "GSM768032" ], "type": "other", "id": "GDS4600_26" }, { "dataset_id": "GDS4600", "description": "pair 2016-06", "sample_id": [ "GSM768033", "GSM768034" ], "type": "other", "id": "GDS4600_27" }, { "dataset_id": "GDS4600", "description": "pair 2016-25", "sample_id": [ "GSM768035", "GSM768036" ], "type": "other", "id": "GDS4600_28" }, { "dataset_id": "GDS4600", "description": "pair 1025-02", "sample_id": [ "GSM768037", "GSM768038" ], "type": "other", "id": "GDS4600_29" }, { "dataset_id": "GDS4600", "description": "pair 1022-09", "sample_id": [ "GSM768039", "GSM768040" ], "type": "other", "id": "GDS4600_30" }, { "dataset_id": "GDS4600", "description": "pair 1022-16", "sample_id": [ "GSM768041", "GSM768042" ], "type": "other", "id": "GDS4600_31" }, { "dataset_id": "GDS4600", "description": "pair 1006-04", "sample_id": [ "GSM768044", "GSM768045" ], "type": "other", "id": "GDS4600_32" }, { "dataset_id": "GDS4600", "description": "pair 2012-42", "sample_id": [ "GSM768046", "GSM768047" ], "type": "other", "id": "GDS4600_33" }, { "dataset_id": "GDS4600", "description": "pair 1019-03", "sample_id": [ "GSM768048", "GSM768049" ], "type": "other", "id": "GDS4600_34" }, { "dataset_id": "GDS4600", "description": "pair 1016-01", "sample_id": [ "GSM768050", "GSM768051" ], "type": "other", "id": "GDS4600_35" }, { "dataset_id": "GDS4600", "description": "pair 1016-08", "sample_id": [ "GSM768052", "GSM768053" ], "type": "other", "id": "GDS4600_36" }, { "dataset_id": "GDS4600", "description": "pair 1016-16", "sample_id": [ "GSM768054", "GSM768055" ], "type": "other", "id": "GDS4600_37" }, { "dataset_id": "GDS4600", "description": "pair 1016-19", "sample_id": [ "GSM768056", "GSM768057" ], "type": "other", "id": "GDS4600_38" }, { "dataset_id": "GDS4600", "description": "pair 1022-01", "sample_id": [ "GSM768059", "GSM768060" ], "type": "other", "id": "GDS4600_39" }, { "dataset_id": "GDS4600", "description": "pair 1022-20", "sample_id": [ "GSM768062", "GSM768063" ], "type": "other", "id": "GDS4600_40" }, { "dataset_id": "GDS4600", "description": "pair 2015-01", "sample_id": [ "GSM768064", "GSM768065" ], "type": "other", "id": "GDS4600_41" }, { "dataset_id": "GDS4600", "description": "pair 2015-05", "sample_id": [ "GSM768066", "GSM768067" ], "type": "other", "id": "GDS4600_42" }, { "dataset_id": "GDS4600", "description": "pair 1022-27", "sample_id": [ "GSM768068", "GSM768069" ], "type": "other", "id": "GDS4600_43" }, { "dataset_id": "GDS4600", "description": "pair 1022-25", "sample_id": [ "GSM768070", "GSM768071" ], "type": "other", "id": "GDS4600_44" }, { "dataset_id": "GDS4600", "description": "pair1019-08", "sample_id": [ "GSM768072", "GSM768073" ], "type": "other", "id": "GDS4600_45" }, { "dataset_id": "GDS4600", "description": "pair 1019-14", "sample_id": [ "GSM768074", "GSM768075" ], "type": "other", "id": "GDS4600_46" }, { "dataset_id": "GDS4600", "description": "pair 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"compression": "gz" } ], [ [ "GDS4601.tab" ], { "title": "Primary keratinocyte response to in vitro cytokine exposure", "description": "Analysis of cultured keratinocytes treated with various cytokines: interleukin-4, -13, -17A, interferon-\u03b1, -\u03b3, or TNF. Marked proliferation of keratinocytes characterizes the chronic inflammatory skin disease psoriasis. Results provide insight into cytokine activity signatures in keratinocytes.", "type": "Expression profiling by array", "pubmed_id": "22479649", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE36287", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4601", "description": "untreated control", "sample_id": [ "GSM886421", "GSM886422", "GSM886423", "GSM886433", "GSM886434", "GSM886435" ], "type": "agent", "id": "GDS4601_1" }, { "dataset_id": "GDS4601", "description": "interferon-\u03b1", "sample_id": [ "GSM886424", "GSM886425", "GSM886426" ], "type": "agent", "id": "GDS4601_2" }, { "dataset_id": "GDS4601", "description": "interferon-\u03b3", "sample_id": [ "GSM886427", "GSM886428", "GSM886429" ], "type": "agent", "id": "GDS4601_3" }, { "dataset_id": "GDS4601", "description": "interleukin-4", "sample_id": [ "GSM886439", "GSM886440", "GSM886441" ], "type": "agent", "id": "GDS4601_4" }, { "dataset_id": "GDS4601", "description": "interleukin-13", "sample_id": [ "GSM886430", "GSM886431", "GSM886432" ], "type": "agent", "id": "GDS4601_5" }, { "dataset_id": "GDS4601", "description": "interleukin-17A", "sample_id": [ "GSM886436", "GSM886437", "GSM886438" ], "type": "agent", "id": "GDS4601_6" }, { "dataset_id": "GDS4601", "description": "tumor necrosis factor", "sample_id": [ "GSM886442", "GSM886443", "GSM886444" ], "type": "agent", "id": "GDS4601_7" }, { "dataset_id": "GDS4601", "description": "subject 1", "sample_id": [ "GSM886421", "GSM886424", "GSM886427", "GSM886430", "GSM886439", "GSM886442" ], "type": "individual", "id": "GDS4601_8" }, { "dataset_id": "GDS4601", "description": "subject 2", "sample_id": [ "GSM886422", "GSM886425", "GSM886428", "GSM886431", "GSM886440", "GSM886443" ], "type": "individual", "id": "GDS4601_9" }, { "dataset_id": "GDS4601", "description": "subject 3", "sample_id": [ "GSM886423", "GSM886426", "GSM886429", "GSM886432", "GSM886441", "GSM886444" ], "type": "individual", "id": "GDS4601_10" }, { "dataset_id": "GDS4601", "description": "n/a", "sample_id": [ "GSM886433", "GSM886434", "GSM886435", "GSM886436", "GSM886437", "GSM886438" ], "type": "individual", "id": "GDS4601_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4601", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4601.tab", "compression": "gz" } ], [ [ "GDS4602.tab" ], { "title": "Psoriasis lesional and non-lesional skin", "description": "Analysis of skin punch biopsies from lesional skin (involved sample) and non-lesional skin (uninvolved sample) from each psoriatic patient. Psoriasis is an immune-mediated, inflammatory and hyperproliferative disease of skin and joints. Results provide insight into the molecular basis of psoriasis.", "type": "Expression profiling by array", "pubmed_id": [ "19169254", "21483750" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "180", "value_type": "transformed count", "reference_series": "GSE13355", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4602", "description": "healthy", "sample_id": [ "GSM337197", "GSM337198", "GSM337199", "GSM337200", "GSM337201", "GSM337202", "GSM337203", "GSM337204", "GSM337205", "GSM337206", "GSM337207", "GSM337208", "GSM337209", "GSM337210", "GSM337211", "GSM337212", "GSM337213", "GSM337214", "GSM337215", "GSM337216", "GSM337217", "GSM337218", "GSM337219", "GSM337220", "GSM337221", "GSM337222", "GSM337223", "GSM337224", "GSM337225", "GSM337226", "GSM337227", "GSM337228", "GSM337229", "GSM337230", "GSM337231", "GSM337232", "GSM337233", "GSM337234", "GSM337235", "GSM337236", "GSM337237", "GSM337238", "GSM337239", "GSM337240", "GSM337241", "GSM337242", "GSM337243", "GSM337244", "GSM337245", "GSM337246", "GSM337247", "GSM337248", "GSM337249", "GSM337250", "GSM337251", "GSM337252", "GSM337253", "GSM337254", "GSM337255", "GSM337256", "GSM337257", "GSM337258", "GSM337259", "GSM337260" ], "type": "disease state", "id": "GDS4602_1" }, { "dataset_id": "GDS4602", "description": "psoriasis", "sample_id": [ "GSM337261", "GSM337262", "GSM337263", "GSM337264", "GSM337265", "GSM337266", "GSM337267", "GSM337268", "GSM337269", "GSM337270", "GSM337271", "GSM337272", "GSM337273", "GSM337274", "GSM337275", "GSM337276", "GSM337277", "GSM337278", "GSM337279", "GSM337280", "GSM337281", "GSM337282", "GSM337283", "GSM337284", "GSM337285", "GSM337286", "GSM337287", "GSM337288", "GSM337289", "GSM337290", "GSM337291", "GSM337292", "GSM337293", "GSM337294", "GSM337295", "GSM337296", "GSM337297", "GSM337298", "GSM337299", "GSM337300", "GSM337301", "GSM337302", "GSM337303", "GSM337304", "GSM337305", "GSM337306", "GSM337307", "GSM337308", "GSM337309", "GSM337310", "GSM337311", "GSM337312", "GSM337313", "GSM337314", "GSM337315", "GSM337316", "GSM337317", "GSM337318", "GSM337319", "GSM337320", "GSM337321", "GSM337322", "GSM337323", "GSM337324", "GSM337325", "GSM337326", "GSM337327", "GSM337328", "GSM337329", "GSM337330", "GSM337331", "GSM337332", "GSM337333", "GSM337334", "GSM337335", "GSM337336", "GSM337337", "GSM337338", "GSM337339", "GSM337340", "GSM337341", "GSM337342", "GSM337343", "GSM337344", "GSM337345", "GSM337346", "GSM337347", "GSM337348", "GSM337349", "GSM337350", "GSM337351", "GSM337352", "GSM337353", "GSM337354", "GSM337355", "GSM337356", "GSM337357", "GSM337358", "GSM337359", "GSM337360", "GSM337361", "GSM337362", "GSM337363", "GSM337364", "GSM337365", "GSM337366", "GSM337367", "GSM337368", "GSM337369", "GSM337370", "GSM337371", "GSM337372", "GSM337373", "GSM337374", "GSM337375", "GSM337376" ], "type": "disease state", "id": "GDS4602_2" }, { "dataset_id": "GDS4602", "description": "normal", "sample_id": [ "GSM337197", "GSM337198", "GSM337199", "GSM337200", "GSM337201", "GSM337202", "GSM337203", "GSM337204", "GSM337205", "GSM337206", "GSM337207", "GSM337208", "GSM337209", "GSM337210", "GSM337211", "GSM337212", "GSM337213", "GSM337214", "GSM337215", "GSM337216", "GSM337217", "GSM337218", "GSM337219", "GSM337220", "GSM337221", "GSM337222", "GSM337223", "GSM337224", "GSM337225", "GSM337226", "GSM337227", "GSM337228", "GSM337229", "GSM337230", "GSM337231", "GSM337232", "GSM337233", "GSM337234", "GSM337235", "GSM337236", "GSM337237", "GSM337238", "GSM337239", "GSM337240", "GSM337241", "GSM337242", "GSM337243", "GSM337244", "GSM337245", "GSM337246", "GSM337247", "GSM337248", "GSM337249", "GSM337250", "GSM337251", "GSM337252", "GSM337253", "GSM337254", "GSM337255", "GSM337256", "GSM337257", "GSM337258", "GSM337259", "GSM337260" ], "type": "specimen", "id": "GDS4602_3" }, { "dataset_id": "GDS4602", "description": "non-lesional - uninvolved", "sample_id": [ "GSM337261", "GSM337262", "GSM337263", "GSM337264", "GSM337265", "GSM337266", "GSM337267", "GSM337268", "GSM337269", "GSM337270", "GSM337271", "GSM337272", "GSM337273", "GSM337274", "GSM337275", "GSM337276", "GSM337277", "GSM337278", "GSM337279", "GSM337280", "GSM337281", "GSM337282", "GSM337283", "GSM337284", "GSM337285", "GSM337286", "GSM337287", "GSM337288", "GSM337289", "GSM337290", "GSM337291", "GSM337292", "GSM337293", "GSM337294", "GSM337295", "GSM337296", "GSM337297", "GSM337298", "GSM337299", "GSM337300", "GSM337301", "GSM337302", "GSM337303", "GSM337304", "GSM337305", "GSM337306", "GSM337307", "GSM337308", "GSM337309", "GSM337310", "GSM337311", "GSM337312", "GSM337313", "GSM337314", "GSM337315", "GSM337316", "GSM337317", "GSM337318" ], "type": "specimen", "id": "GDS4602_4" }, { "dataset_id": "GDS4602", "description": "lesional - involved", "sample_id": [ "GSM337319", "GSM337320", "GSM337321", "GSM337322", "GSM337323", "GSM337324", "GSM337325", "GSM337326", "GSM337327", "GSM337328", "GSM337329", "GSM337330", "GSM337331", "GSM337332", "GSM337333", "GSM337334", "GSM337335", "GSM337336", "GSM337337", "GSM337338", "GSM337339", "GSM337340", "GSM337341", "GSM337342", "GSM337343", "GSM337344", "GSM337345", "GSM337346", "GSM337347", "GSM337348", "GSM337349", "GSM337350", "GSM337351", "GSM337352", "GSM337353", "GSM337354", "GSM337355", "GSM337356", "GSM337357", "GSM337358", "GSM337359", "GSM337360", "GSM337361", "GSM337362", "GSM337363", "GSM337364", "GSM337365", "GSM337366", "GSM337367", "GSM337368", "GSM337369", "GSM337370", "GSM337371", "GSM337372", "GSM337373", "GSM337374", "GSM337375", "GSM337376" ], "type": "specimen", "id": "GDS4602_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4602", "version": 1.0, "instances": "180", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4602.tab", "compression": "gz" } ], [ [ "GDS4606.tab" ], { "title": "Post-therapeutic relapse of psoriasis: whole skin punch biopsies", "description": "Analysis of skin samples from 4 responding patients who relapsed following efalizumab treatment for psoriasis: baseline non-lesional and lesional samples; week 12 post-treatment and relapse samples. Results provide insight into molecular mechanisms underlying post-therapeutic relapse of psoriasis.", "type": "Expression profiling by array", "pubmed_id": "22348003", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE30768", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4606", "description": "non-lesional", "sample_id": [ "GSM763503", "GSM763508" ], "type": "disease state", "id": "GDS4606_1" }, { "dataset_id": "GDS4606", "description": "lesional", "sample_id": [ "GSM763510", "GSM763512", "GSM763514", "GSM763515" ], "type": "disease state", "id": "GDS4606_2" }, { "dataset_id": "GDS4606", "description": "non-relapse", "sample_id": [ "GSM763502", "GSM763504", "GSM763506", "GSM763513" ], "type": "disease state", "id": "GDS4606_3" }, { "dataset_id": "GDS4606", "description": "relapse", "sample_id": [ "GSM763505", "GSM763507", "GSM763509", "GSM763511" ], "type": "disease state", "id": "GDS4606_4" }, { "dataset_id": "GDS4606", "description": "baseline", "sample_id": [ "GSM763503", "GSM763508", "GSM763510", "GSM763512", "GSM763514", "GSM763515" ], "type": "time", "id": "GDS4606_5" }, { "dataset_id": "GDS4606", "description": "week 12", "sample_id": [ "GSM763502", "GSM763504", "GSM763505", "GSM763506", "GSM763507", "GSM763509", "GSM763511", "GSM763513" ], "type": "time", "id": "GDS4606_6" }, { "dataset_id": "GDS4606", "description": "P1", "sample_id": [ "GSM763506", "GSM763508", "GSM763512", "GSM763507" ], "type": "individual", "id": "GDS4606_7" }, { "dataset_id": "GDS4606", "description": "P2", "sample_id": [ "GSM763504", "GSM763514", "GSM763511" ], "type": "individual", "id": "GDS4606_8" }, { "dataset_id": "GDS4606", "description": "P3", "sample_id": [ "GSM763502", "GSM763510", "GSM763505" ], "type": "individual", "id": "GDS4606_9" }, { "dataset_id": "GDS4606", "description": "P4", "sample_id": [ "GSM763513", "GSM763503", "GSM763515", "GSM763509" ], "type": "individual", "id": "GDS4606_10" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4606", "version": 1.0, "instances": "14", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4606.tab", "compression": "gz" } ], [ [ "GDS4607.tab" ], { "title": "Psoriasis non-lesional skin response to interferon-\u03b3", "description": "Analysis of non-lesional (NL) skin of psoriasis patients 24 hrs after a single intradermal injection of interferon-\u03b3 (IFN-\u03b3) to the NL skin. Results suggest that IFN-\u03b3 may prime an inflammatory environment in the skin that shares many features with psoriasis.", "type": "Expression profiling by array", "pubmed_id": "22277938", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "transformed count", "reference_series": "GSE32407", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS4607", "description": "psoriasis", "sample_id": [ "GSM802143", "GSM802142", "GSM802141", "GSM802194", "GSM802193", "GSM802192", "GSM802146", "GSM802145", "GSM802144", "GSM802155", "GSM802154", "GSM802153", "GSM802158", "GSM802157", "GSM802156", "GSM802167", "GSM802166", "GSM802165", "GSM802170", "GSM802169", "GSM802168", "GSM802179", "GSM802178", "GSM802177", "GSM802182", "GSM802181", "GSM802180", "GSM802191", "GSM802190", "GSM802189" ], "type": "disease state", "id": "GDS4607_1" }, { "dataset_id": "GDS4607", "description": "healthy", "sample_id": [ "GSM802137", "GSM802136", "GSM802135", "GSM802188", "GSM802187", "GSM802186", "GSM802140", "GSM802139", "GSM802138", "GSM802149", "GSM802148", "GSM802147", "GSM802151", "GSM802152", "GSM802150", "GSM802161", "GSM802160", "GSM802159", "GSM802163", "GSM802164", "GSM802162", "GSM802173", "GSM802172", "GSM802171", "GSM802175", "GSM802176", "GSM802174", "GSM802185", "GSM802184", "GSM802183" ], "type": "disease state", "id": "GDS4607_2" }, { "dataset_id": "GDS4607", "description": "baseline", "sample_id": [ "GSM802135", "GSM802138", "GSM802141", "GSM802144", "GSM802147", "GSM802150", "GSM802153", "GSM802156", "GSM802159", "GSM802162", "GSM802165", "GSM802168", "GSM802171", "GSM802174", "GSM802177", "GSM802180", "GSM802183", "GSM802186", "GSM802189", "GSM802192" ], "type": "protocol", "id": "GDS4607_3" }, { "dataset_id": "GDS4607", "description": "interferon-\u03b3 injection", "sample_id": [ "GSM802137", "GSM802140", "GSM802143", "GSM802146", "GSM802149", "GSM802151", "GSM802155", "GSM802158", "GSM802161", "GSM802163", "GSM802167", "GSM802170", "GSM802173", "GSM802175", "GSM802179", "GSM802182", "GSM802185", "GSM802188", "GSM802191", "GSM802194" ], "type": "protocol", "id": "GDS4607_4" }, { "dataset_id": "GDS4607", "description": "placebo", "sample_id": [ "GSM802136", "GSM802139", "GSM802142", "GSM802145", "GSM802148", "GSM802152", "GSM802154", "GSM802157", "GSM802160", "GSM802164", "GSM802166", "GSM802169", "GSM802172", "GSM802176", "GSM802178", "GSM802181", "GSM802184", "GSM802187", "GSM802190", "GSM802193" ], "type": "protocol", "id": "GDS4607_5" }, { "dataset_id": "GDS4607", "description": "control", "sample_id": [ "GSM802135", "GSM802138", "GSM802147", "GSM802150", "GSM802159", "GSM802162", "GSM802171", "GSM802174", "GSM802183", "GSM802186", "GSM802141", "GSM802144", "GSM802153", "GSM802156", "GSM802165", "GSM802168", "GSM802177", "GSM802180", "GSM802189", "GSM802192" ], "type": "time", "id": "GDS4607_6" }, { "dataset_id": "GDS4607", "description": "hour 24", "sample_id": [ "GSM802137", "GSM802140", "GSM802149", "GSM802151", "GSM802161", "GSM802163", "GSM802173", "GSM802175", "GSM802185", "GSM802188", "GSM802143", "GSM802146", "GSM802155", "GSM802158", "GSM802167", "GSM802170", "GSM802179", "GSM802182", "GSM802191", "GSM802194", "GSM802176", "GSM802184", "GSM802187", "GSM802142", "GSM802145", "GSM802154", "GSM802157", "GSM802166", "GSM802169", "GSM802178", "GSM802181", "GSM802190", "GSM802193", "GSM802136", "GSM802139", "GSM802148", "GSM802152", "GSM802160", "GSM802164", "GSM802172" ], "type": "time", "id": "GDS4607_7" }, { "dataset_id": "GDS4607", "description": "H-01", "sample_id": [ "GSM802137", "GSM802136", "GSM802135" ], "type": "individual", "id": "GDS4607_8" }, { "dataset_id": "GDS4607", "description": "H-02", "sample_id": [ "GSM802140", "GSM802139", "GSM802138" ], "type": "individual", "id": "GDS4607_9" }, { "dataset_id": "GDS4607", "description": "H-03", "sample_id": [ "GSM802149", "GSM802148", "GSM802147" ], "type": "individual", "id": "GDS4607_10" }, { "dataset_id": "GDS4607", "description": "H-04", "sample_id": [ "GSM802151", "GSM802152", "GSM802150" ], "type": "individual", "id": "GDS4607_11" }, { "dataset_id": "GDS4607", "description": "H-05", "sample_id": [ "GSM802161", "GSM802160", "GSM802159" ], "type": "individual", "id": "GDS4607_12" }, { "dataset_id": "GDS4607", "description": "H-06", "sample_id": [ "GSM802163", "GSM802164", "GSM802162" ], "type": "individual", "id": "GDS4607_13" }, { "dataset_id": "GDS4607", "description": "H-07", "sample_id": [ "GSM802173", "GSM802172", "GSM802171" ], "type": "individual", "id": "GDS4607_14" }, { "dataset_id": "GDS4607", "description": "H-08", "sample_id": [ "GSM802175", "GSM802176", "GSM802174" ], "type": "individual", "id": "GDS4607_15" }, { "dataset_id": "GDS4607", "description": "H-09", "sample_id": [ "GSM802185", "GSM802184", "GSM802183" ], "type": "individual", "id": "GDS4607_16" }, { "dataset_id": "GDS4607", "description": "H-10", "sample_id": [ "GSM802188", "GSM802187", "GSM802186" ], "type": "individual", "id": "GDS4607_17" }, { "dataset_id": "GDS4607", "description": "P-01", "sample_id": [ "GSM802143", "GSM802142", "GSM802141" ], "type": "individual", "id": "GDS4607_18" }, { "dataset_id": "GDS4607", "description": "P-02", "sample_id": [ "GSM802146", "GSM802145", "GSM802144" ], "type": "individual", "id": "GDS4607_19" }, { "dataset_id": "GDS4607", "description": "P-03", "sample_id": [ "GSM802155", "GSM802154", "GSM802153" ], "type": "individual", "id": "GDS4607_20" }, { "dataset_id": "GDS4607", "description": "P-04", "sample_id": [ "GSM802158", "GSM802157", "GSM802156" ], "type": "individual", "id": "GDS4607_21" }, { "dataset_id": "GDS4607", "description": "P-05", "sample_id": [ "GSM802167", "GSM802166", "GSM802165" ], "type": "individual", "id": "GDS4607_22" }, { "dataset_id": "GDS4607", "description": "P-06", "sample_id": [ "GSM802170", "GSM802169", "GSM802168" ], "type": "individual", "id": "GDS4607_23" }, { "dataset_id": "GDS4607", "description": "P-07", "sample_id": [ "GSM802179", "GSM802178", "GSM802177" ], "type": "individual", "id": "GDS4607_24" }, { "dataset_id": "GDS4607", "description": "P-08", "sample_id": [ "GSM802182", "GSM802181", "GSM802180" ], "type": "individual", "id": "GDS4607_25" }, { "dataset_id": "GDS4607", "description": "P-09", "sample_id": [ "GSM802191", "GSM802190", "GSM802189" ], "type": "individual", "id": "GDS4607_26" }, { "dataset_id": "GDS4607", "description": "P-10", "sample_id": [ "GSM802194", "GSM802193", "GSM802192" ], "type": "individual", "id": "GDS4607_27" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4607", "version": 1.0, "instances": "60", "variables": 14059, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4607.tab", "compression": "gz" } ], [ [ "GDS4608.tab" ], { "title": "Epidermal injury model", "description": "Analysis of trypsin-disassociated keratinocytes (KCs) isolated from normal skin as a model for epidermal injury. These sorted keratinocytes (KC sorted) were compared to KCs isolated by LCM (KC LCM) and long-term cultured KCs (KC in vitro). Results provide insight into the KC injury response.", "type": "Expression profiling by array", "pubmed_id": "21881590", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE30355", "order": "none", "update_date": "Jun 23 2014", "subsets": [ { "dataset_id": "GDS4608", "description": "KC sorted", "sample_id": [ "GSM753020", "GSM753021", "GSM753022", "GSM753023", "GSM753024", "GSM753025", "GSM753026", "GSM753027", "GSM753028", "GSM753029" ], "type": "cell type", "id": "GDS4608_1" }, { "dataset_id": "GDS4608", "description": "KC LCM", "sample_id": [ "GSM753010", "GSM753011", "GSM753012", "GSM753013", "GSM753014", "GSM753015", "GSM753016", "GSM753017", "GSM753018", "GSM753019" ], "type": "cell type", "id": "GDS4608_2" }, { "dataset_id": "GDS4608", "description": "KC in vitro", "sample_id": [ "GSM753030", "GSM753031", "GSM753032", "GSM753035", "GSM753037", "GSM753039", "GSM753042", "GSM753044", "GSM753047", "GSM753049" ], "type": "cell type", "id": "GDS4608_3" }, { "dataset_id": "GDS4608", "description": "injured", "sample_id": [ "GSM753020", "GSM753021", "GSM753022", "GSM753023", "GSM753024", "GSM753025", "GSM753026", "GSM753027", "GSM753028", "GSM753029" ], "type": "protocol", "id": "GDS4608_4" }, { "dataset_id": "GDS4608", "description": "uninjured control", "sample_id": [ "GSM753010", "GSM753011", "GSM753012", "GSM753013", "GSM753014", "GSM753015", "GSM753016", "GSM753017", "GSM753018", "GSM753019" ], "type": "protocol", "id": "GDS4608_5" }, { "dataset_id": "GDS4608", "description": "in vitro culture", "sample_id": [ "GSM753030", "GSM753031", "GSM753032", "GSM753035", "GSM753037", "GSM753039", "GSM753042", "GSM753044", "GSM753047", "GSM753049" ], "type": "protocol", "id": "GDS4608_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4608", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4608.tab", "compression": "gz" } ], [ [ "GDS4609.tab" ], { "title": "Combined effects of in utero and adult second-hand smoke exposure on adult lungs", "description": "Analysis of lung from 15-wk-old males exposed in utero and then as adults to second hand smoke (SHS). These animals exhibit increased airway hyperresponsiveness. Results provide insight into the role of in utero SHS exposure in potentiating subsequent adult physiological responses to SHS exposure.", "type": "Expression profiling by array", "pubmed_id": "22962063", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE36810", "order": "none", "update_date": "Jun 23 2014", "subsets": [ { "dataset_id": "GDS4609", "description": "in utero air, adult air", "sample_id": [ "GSM902170", "GSM902171", "GSM902172", "GSM902173" ], "type": "protocol", "id": "GDS4609_1" }, { "dataset_id": "GDS4609", "description": "in utero air, adult second hand smoke", "sample_id": [ "GSM902174", "GSM902175", "GSM902176", "GSM902177" ], "type": "protocol", "id": "GDS4609_2" }, { "dataset_id": "GDS4609", "description": "in utero second hand smoke, adult air", "sample_id": [ "GSM902178", "GSM902179", "GSM902180", "GSM902181" ], "type": "protocol", "id": "GDS4609_3" }, { "dataset_id": "GDS4609", "description": "in utero second hand smoke, adult second hand smoke", "sample_id": [ "GSM902182", "GSM902183", "GSM902184", "GSM902185" ], "type": "protocol", "id": "GDS4609_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4609", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4609.tab", "compression": "gz" } ], [ [ "GDS4610.tab" ], { "title": "DNA damage effect on memory and non-memory cells", "description": "Analysis of memory and non-memory cells sorted from MD12/p53R2-RE cells 3 days after UV-induced DNA damage. Cells in a population respond heterogeneously to DNA damage. Results provide insight into heritable memory of DNA damage existing in subpopulations that differ in long-term cell behavior.", "type": "Expression profiling by array", "pubmed_id": "22751502", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE38189", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4610", "description": "MD12/p53R2-RE", "sample_id": [ "GSM936407", "GSM936408", "GSM936409", "GSM936410" ], "type": "genotype/variation", "id": "GDS4610_1" }, { "dataset_id": "GDS4610", "description": "MD10/TetOx2", "sample_id": [ "GSM936411", "GSM936412", "GSM936413", "GSM936414" ], "type": "genotype/variation", "id": "GDS4610_2" }, { "dataset_id": "GDS4610", "description": "UV", "sample_id": [ "GSM936407", "GSM936408", "GSM936409", "GSM936410" ], "type": "stress", "id": "GDS4610_3" }, { "dataset_id": "GDS4610", "description": "doxycycline", "sample_id": [ "GSM936411", "GSM936412", "GSM936413", "GSM936414" ], "type": "stress", "id": "GDS4610_4" }, { "dataset_id": "GDS4610", "description": "memory", "sample_id": [ "GSM936407", "GSM936409", "GSM936411", "GSM936413" ], "type": "cell type", "id": "GDS4610_5" }, { "dataset_id": "GDS4610", "description": "non-memory", "sample_id": [ "GSM936408", "GSM936410", "GSM936412", "GSM936414" ], "type": "cell type", "id": "GDS4610_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4610", "version": 1.0, "instances": "8", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4610.tab", "compression": "gz" } ], [ [ "GDS4611.tab" ], { "title": "Ionizing radiation effect on p53 mutant third instar larvae wing imaginal discs: time course", "description": "Analysis of p53 mutant larvae wing imaginal discs up to 18hr after exposure to ionizing radiation (IR). Results provide insight into the molecular mechanisms underlying IR-induced, p53-independent apoptosis in larvae.", "type": "Expression profiling by array", "pubmed_id": "22666323", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE37404", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4611", "description": "p53 mutant", "sample_id": [ "GSM917818", "GSM917819", "GSM917820", "GSM917821", "GSM917822", "GSM917823", "GSM917824", "GSM917825" ], "type": "genotype/variation", "id": "GDS4611_1" }, { "dataset_id": "GDS4611", "description": "wild type", "sample_id": [ "GSM917826", "GSM917827", "GSM917828", "GSM917829", "GSM917830", "GSM917831", "GSM917832", "GSM917833" ], "type": "genotype/variation", "id": "GDS4611_2" }, { "dataset_id": "GDS4611", "description": "ionizing radiation", "sample_id": [ "GSM917820", "GSM917821", "GSM917824", "GSM917825", "GSM917828", "GSM917829", "GSM917832", "GSM917833" ], "type": "protocol", "id": "GDS4611_3" }, { "dataset_id": "GDS4611", "description": "control", "sample_id": [ "GSM917823", "GSM917826", "GSM917827", "GSM917830", "GSM917831", "GSM917818", "GSM917819", "GSM917822" ], "type": "protocol", "id": "GDS4611_4" }, { "dataset_id": "GDS4611", "description": "hour 2", "sample_id": [ "GSM917822", "GSM917823", "GSM917824", "GSM917825", "GSM917826", "GSM917827", "GSM917828", "GSM917829" ], "type": "time", "id": "GDS4611_5" }, { "dataset_id": "GDS4611", "description": "hour 18", "sample_id": [ "GSM917818", "GSM917819", "GSM917820", "GSM917821", "GSM917830", "GSM917831", "GSM917832", "GSM917833" ], "type": "time", "id": "GDS4611_6" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS4611", "version": 1.0, "instances": "16", "variables": 16715, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4611.tab", "compression": "gz" } ], [ [ "GDS4612.tab" ], { "title": "Early postnatal nerve tissue response to acrylamide: cerebellum", "description": "Analysis of cerebellum from 3 week-old male Wistar pups treated daily with acrylamide (30 mg/kg) for 21 days. Acrylamide is a type-2 alkene monomer with established human neurotoxic effects. Results provide insight into the molecular basis of acrylamide neurotoxicity in developing nervous tissue.", "type": "Expression profiling by array", "pubmed_id": "22197712", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE29004", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS4612", "description": "acrylamide", "sample_id": [ "GSM718691", "GSM718692" ], "type": "agent", "id": "GDS4612_1" }, { "dataset_id": "GDS4612", "description": "control", "sample_id": [ "GSM718690", "GSM718689" ], "type": "agent", "id": "GDS4612_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4612", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4612.tab", "compression": "gz" } ], [ [ "GDS4613.tab" ], { "title": "Maternal voluntary consumption model of fetal alcohol spectrum disorders: adult offspring brain", "description": "Analysis of brain from adult (postnatal day 70) male offspring prenatally exposed to alcohol via voluntary maternal consumption from gestational day 0 to pup postnatal day 10. Results provide insight into molecular basis of long-term persistence of FASD-related cognitive and behavioral alterations.", "type": "Expression profiling by array", "pubmed_id": "22560501", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE34305", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4613", "description": "experiment 1", "sample_id": [ "GSM847024", "GSM847025", "GSM847026", "GSM847027" ], "type": "other", "id": "GDS4613_1" }, { "dataset_id": "GDS4613", "description": "experiment 2", "sample_id": [ "GSM847028", "GSM847029", "GSM847030", "GSM847031", "GSM847032", "GSM847033" ], "type": "other", "id": "GDS4613_2" }, { "dataset_id": "GDS4613", "description": "ethanol", "sample_id": [ "GSM847024", "GSM847025", "GSM847028", "GSM847030", "GSM847032" ], "type": "protocol", "id": "GDS4613_3" }, { "dataset_id": "GDS4613", "description": "control", "sample_id": [ "GSM847026", "GSM847027", "GSM847029", "GSM847031", "GSM847033" ], "type": "protocol", "id": "GDS4613_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4613", "version": 1.0, "instances": "10", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4613.tab", "compression": "gz" } ], [ [ "GDS4614.tab" ], { "title": "Short-term dietary zinc deficiency effect on diencephalon", "description": "Analysis of diencephalon from Sprague-Dawley males fed a zinc-deficient diet for 10 days. Zinc is an essential trace element; its imbalance causes deviations in eating behaviors. Results provide insight into the molecular effects of short-term zinc deficiency on the brain.", "type": "Expression profiling by array", "pubmed_id": "22488846", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE31430", "order": "none", "update_date": "Jul 09 2014", "subsets": [ { "dataset_id": "GDS4614", "description": "pair-fed control diet", "sample_id": [ "GSM780656", "GSM780657", "GSM780658", "GSM780659" ], "type": "growth protocol", "id": "GDS4614_1" }, { "dataset_id": "GDS4614", "description": "zinc-deficient diet", "sample_id": [ "GSM780660", "GSM780661", "GSM780662", "GSM780663" ], "type": "growth protocol", "id": "GDS4614_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4614", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4614.tab", "compression": "gz" } ], [ [ "GDS4615.tab" ], { "title": "Adult retina response to light", "description": "Analysis of ex-vivo retinas collected from Long Evans adults kept all night in the dark and then exposed either for 3 hours (3 ZT) or 6 hours (6 ZT) to a 1000 lux light. Results provide insight into the molecular mechanisms underlying adult retinal light adaptation.", "type": "Expression profiling by array", "pubmed_id": "22039463", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE29299", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4615", "description": "0 ZT - 7 AM", "sample_id": [ "GSM724207", "GSM724208", "GSM724209" ], "type": "time", "id": "GDS4615_1" }, { "dataset_id": "GDS4615", "description": "3 ZT - 10 AM", "sample_id": [ "GSM724210", "GSM724211", "GSM724212", "GSM724213", "GSM724214", "GSM724215" ], "type": "time", "id": "GDS4615_2" }, { "dataset_id": "GDS4615", "description": "6 ZT - 1 PM", "sample_id": [ "GSM724216", "GSM724217", "GSM724218", "GSM724219", "GSM724220", "GSM724221" ], "type": "time", "id": "GDS4615_3" }, { "dataset_id": "GDS4615", "description": "0 hour dark control", "sample_id": [ "GSM724207", "GSM724208", "GSM724209" ], "type": "protocol", "id": "GDS4615_4" }, { "dataset_id": "GDS4615", "description": "3 hour dark control", "sample_id": [ "GSM724210", "GSM724211", "GSM724212" ], "type": "protocol", "id": "GDS4615_5" }, { "dataset_id": "GDS4615", "description": "3 hour light exposure", "sample_id": [ "GSM724213", "GSM724214", "GSM724215" ], "type": "protocol", "id": "GDS4615_6" }, { "dataset_id": "GDS4615", "description": "6 hour dark control", "sample_id": [ "GSM724216", "GSM724217", "GSM724218" ], "type": "protocol", "id": "GDS4615_7" }, { "dataset_id": "GDS4615", "description": "6 hour light exposure", "sample_id": [ "GSM724219", "GSM724220", "GSM724221" ], "type": "protocol", "id": "GDS4615_8" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4615", "version": 1.0, "instances": "15", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4615.tab", "compression": "gz" } ], [ [ "GDS4617.tab" ], { "title": "Metastatic neuroblastoma model: abdominal neuroblastoma tumors", "description": "Analysis of primary abdominal neuroblastoma (NB) tumors from a metastatic NB model. This model recapitulates two alterations frequent observed in metastatic NB: MYCN overexpression and loss of caspase-8 expression. Results provide insight into the molecular mechanisms underlying metastatic NB.", "type": "Expression profiling by array", "pubmed_id": "23536557", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE42548", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4617", "description": "wild type caspase-8", "sample_id": [ "GSM1044930", "GSM1044931", "GSM1044932", "GSM1044947", "GSM1044948", "GSM1044949", "GSM1044950", "GSM1044951", "GSM1044952" ], "type": "genotype/variation", "id": "GDS4617_1" }, { "dataset_id": "GDS4617", "description": "caspase-8 deficiency", "sample_id": [ "GSM1044933", "GSM1044934", "GSM1044935", "GSM1044936", "GSM1044937", "GSM1044938", "GSM1044939", "GSM1044940", "GSM1044941", "GSM1044942", "GSM1044943", "GSM1044944", "GSM1044945", "GSM1044946", "GSM1044953", "GSM1044954", "GSM1044955", "GSM1044956", "GSM1044957", "GSM1044958" ], "type": "genotype/variation", "id": "GDS4617_2" }, { "dataset_id": "GDS4617", "description": "primary abdominal NB tumor", "sample_id": [ "GSM1044955", "GSM1044954", "GSM1044953", "GSM1044950", "GSM1044949", "GSM1044948", "GSM1044947", "GSM1044946", "GSM1044945", "GSM1044944", "GSM1044943", "GSM1044942", "GSM1044941", "GSM1044940", "GSM1044939", "GSM1044938", "GSM1044937", "GSM1044936", "GSM1044935", "GSM1044934", "GSM1044933", "GSM1044932", "GSM1044931", "GSM1044930" ], "type": "tissue", "id": "GDS4617_3" }, { "dataset_id": "GDS4617", "description": "total bone marrow", "sample_id": [ "GSM1044958", "GSM1044957", "GSM1044956", "GSM1044952", "GSM1044951" ], "type": "tissue", "id": "GDS4617_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4617", "version": 1.0, "instances": "29", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4617.tab", "compression": "gz" } ], [ [ "GDS4618.tab" ], { "title": "Neuroblastoma SKNAS induced cancer stem cells", "description": "Analysis of phenotypically stabilized stem cell-like NB cells (iCSCs) established from SKNAS NB cells by DNA methylation inhibitor 5-aza-2\u2019-deoxycytidine (5AdC) treatment followed by sphere-forming culture conditions. Results provide insight into the molecular characteristics of SKNAS iCSCs.", "type": "Expression profiling by array", "pubmed_id": "23479628", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE44537", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4618", "description": "no pretreatment", "sample_id": [ "GSM1086183", "GSM1086184", "GSM1086185", "GSM1086186" ], "type": "protocol", "id": "GDS4618_1" }, { "dataset_id": "GDS4618", "description": "5AdC (5d before sphere culture)", "sample_id": [ "GSM1086187", "GSM1086188" ], "type": "protocol", "id": "GDS4618_2" }, { "dataset_id": "GDS4618", "description": "monolayer", "sample_id": [ "GSM1086183", "GSM1086184" ], "type": "growth protocol", "id": "GDS4618_3" }, { "dataset_id": "GDS4618", "description": "sphere", "sample_id": [ "GSM1086185", "GSM1086186", "GSM1086187", "GSM1086188" ], "type": "growth protocol", "id": "GDS4618_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4618", "version": 1.0, "instances": "6", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4618.tab", "compression": "gz" } ], [ [ "GDS4619.tab" ], { "title": "Palatal mesenchymal cells response to TGF\u03b22 stimulation in the presence of Tak1 kinase and TGF\u03b2RI inhibitors", "description": "Analysis of palatal mesenchymal cells treated with TGF\u03b2-activated kinase 1 (Tak1) inhibitor or TGF\u03b2 type I receptor (TGF\u03b2RI) kinase inhibitor for 1hr and then stimulated with TGF-\u03b22 for 2 hrs. Results provide insight into TGF\u03b2 signaling mechanisms involved in craniofacial development.", "type": "Expression profiling by array", "pubmed_id": "23546880", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE45491", "order": "none", "update_date": "Jun 25 2014", "subsets": [ { "dataset_id": "GDS4619", "description": "Tak1 inhibitor 5Z-7-oxozeaenol and TGF\u03b22", "sample_id": [ "GSM1105586" ], "type": "protocol", "id": "GDS4619_1" }, { "dataset_id": "GDS4619", "description": "TGF\u03b2RI inhibitor SB431542 and TGF\u03b22", "sample_id": [ "GSM1105585" ], "type": "protocol", "id": "GDS4619_2" }, { "dataset_id": "GDS4619", "description": "untreated", "sample_id": [ "GSM1105583" ], "type": "protocol", "id": "GDS4619_3" }, { "dataset_id": "GDS4619", "description": "TGF\u03b22", "sample_id": [ "GSM1105584" ], "type": "protocol", "id": "GDS4619_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4619", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4619.tab", "compression": "gz" } ], [ [ "GDS4620.tab" ], { "title": "Multiple myeloma bone marrow mesenchymal stromal cells", "description": "Analysis of bone marrow mesenchymal stromal cells (BM-MSCs) from untreated multiple myeloma (MM) patients. In MM, BM-MSCs support myeloma cell growth. Results provide insight into the molecular mechanisms underlying constitutive abnormalities in MM BM-MSCs relative to healthy donors\u2019 BM-MSCs.", "type": "Expression profiling by array", "pubmed_id": "23555770", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE36474", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS4620", "description": "healthy", "sample_id": [ "GSM894405", "GSM894406", "GSM894407" ], "type": "disease state", "id": "GDS4620_1" }, { "dataset_id": "GDS4620", "description": "multiple myeloma", "sample_id": [ "GSM894408", "GSM894409", "GSM894410", "GSM894411" ], "type": "disease state", "id": "GDS4620_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4620", "version": 1.0, "instances": "7", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4620.tab", "compression": "gz" } ], [ [ "GDS4621.tab" ], { "title": "Mutated anaplastic lymphoma kinase-driven neuroblastoma model", "description": "Analysis of neuroblastomas (NB) induced by mutated anaplastic lymphoma kinase (ALKF1174L), MYCN, or both oncogenes. ALK is a gene normally expressed in the developing nervous system. Results provide insight into the role of mutated ALK in tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "22764207", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE32386", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS4621", "description": "normal", "sample_id": [ "GSM801624", "GSM801625", "GSM801626" ], "type": "genotype/variation", "id": "GDS4621_1" }, { "dataset_id": "GDS4621", "description": "mutated ALK", "sample_id": [ "GSM801617", "GSM801618", "GSM801619" ], "type": "genotype/variation", "id": "GDS4621_2" }, { "dataset_id": "GDS4621", "description": "MYCN and mutated ALK", "sample_id": [ "GSM914181", "GSM914182", "GSM914183" ], "type": "genotype/variation", "id": "GDS4621_3" }, { "dataset_id": "GDS4621", "description": "MYCN", "sample_id": [ "GSM801620", "GSM801621", "GSM801622", "GSM801623" ], "type": "genotype/variation", "id": "GDS4621_4" }, { "dataset_id": "GDS4621", "description": "tumor", "sample_id": [ "GSM801619", "GSM801620", "GSM801621", "GSM801622", "GSM801623", "GSM914181", "GSM914182", "GSM914183", "GSM801617", "GSM801618" ], "type": "tissue", "id": "GDS4621_5" }, { "dataset_id": "GDS4621", "description": "adrenal", "sample_id": [ "GSM801624", "GSM801625", "GSM801626" ], "type": "tissue", "id": "GDS4621_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4621", "version": 1.0, "instances": "13", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4621.tab", "compression": "gz" } ], [ [ "GDS4622.tab" ], { "title": "Clock mutant cecum response to Salmonella enterica serovar Typhimurium infection at different circadian times", "description": "Analysis of cecum from master circadian regulator Clock mutants infected with S. Typhimurium at two circadian times (10am and 10pm). Clock mutants infected at night exhibited higher inflammation. Results provide insight into the role of the circadian clock in the host immune response to infection.", "type": "Expression profiling by array", "pubmed_id": "23716692", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE46356", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS4622", "description": "wildtype", "sample_id": [ "GSM1129087", "GSM1129086", "GSM1129085", "GSM1129084", "GSM1129083", "GSM1129082", "GSM1129100", "GSM1129099", "GSM1129098", "GSM1129097", "GSM1129096", "GSM1129095", "GSM1129094" ], "type": "genotype/variation", "id": "GDS4622_1" }, { "dataset_id": "GDS4622", "description": "circadian clock mutant", "sample_id": [ "GSM1129093", "GSM1129092", "GSM1129091", "GSM1129090", "GSM1129089", "GSM1129088", "GSM1129106", "GSM1129105", "GSM1129104", "GSM1129103", "GSM1129102", "GSM1129101" ], "type": "genotype/variation", "id": "GDS4622_2" }, { "dataset_id": "GDS4622", "description": "Salmonella pathogen", "sample_id": [ "GSM1129103", "GSM1129102", "GSM1129101", "GSM1129106", "GSM1129105", "GSM1129104", "GSM1129097", "GSM1129096", "GSM1129095", "GSM1129094", "GSM1129100", "GSM1129099", "GSM1129098" ], "type": "infection", "id": "GDS4622_3" }, { "dataset_id": "GDS4622", "description": "uninfected", "sample_id": [ "GSM1129090", "GSM1129089", "GSM1129088", "GSM1129093", "GSM1129092", "GSM1129091", "GSM1129084", "GSM1129083", "GSM1129082", "GSM1129087", "GSM1129086", "GSM1129085" ], "type": "infection", "id": "GDS4622_4" }, { "dataset_id": "GDS4622", "description": "10 AM day", "sample_id": [ "GSM1129103", "GSM1129102", "GSM1129101", "GSM1129090", "GSM1129089", "GSM1129088", "GSM1129097", "GSM1129096", "GSM1129095", "GSM1129084", "GSM1129083", "GSM1129082", "GSM1129094" ], "type": "time", "id": "GDS4622_5" }, { "dataset_id": "GDS4622", "description": "10 PM night", "sample_id": [ "GSM1129106", "GSM1129105", "GSM1129104", "GSM1129093", "GSM1129092", "GSM1129091", "GSM1129100", "GSM1129099", "GSM1129098", "GSM1129087", "GSM1129086", "GSM1129085" ], "type": "time", "id": "GDS4622_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4622", "version": 1.0, "instances": "25", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4622.tab", "compression": "gz" } ], [ [ "GDS4623.tab" ], { "title": "Atypical neuroleptic quetiapine effect on brain: dose response", "description": "Analysis of frontal cortex and striatum from males treated with quetiapine at doses of 10 or 100\u2009mg/kg, twice a day for 28 days. Quetiapine has pharmacological actions distinct from classic neuroleptics. Results provide insight into molecular basis of the unique therapeutic profile of quetiapine.", "type": "Expression profiling by array", "pubmed_id": "23549417", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE45229", "order": "none", "update_date": "May 19 2016", "subsets": [ { "dataset_id": "GDS4623", "description": "vehicle", "sample_id": [ "GSM1099476", "GSM1099477", "GSM1099487", "GSM1099488" ], "type": "agent", "id": "GDS4623_1" }, { "dataset_id": "GDS4623", "description": "haloperidol", "sample_id": [ "GSM1099478", "GSM1099479", "GSM1099480", "GSM1099481", "GSM1099489", "GSM1099490", "GSM1099491", "GSM1099492" ], "type": "agent", "id": "GDS4623_2" }, { "dataset_id": "GDS4623", "description": "quetiapine", "sample_id": [ "GSM1099482", "GSM1099483", "GSM1099485", "GSM1099486", "GSM1099493", "GSM1099494", "GSM1099496", "GSM1099497" ], "type": "agent", "id": "GDS4623_3" }, { "dataset_id": "GDS4623", "description": "control", "sample_id": [ "GSM1099476", "GSM1099477", "GSM1099487", "GSM1099488" ], "type": "dose", "id": "GDS4623_4" }, { "dataset_id": "GDS4623", "description": "0.3 mg/kg", "sample_id": [ "GSM1099480", "GSM1099481", "GSM1099491", "GSM1099492" ], "type": "dose", "id": "GDS4623_5" }, { "dataset_id": "GDS4623", "description": "1 mg/kg", "sample_id": [ "GSM1099478", "GSM1099479", "GSM1099489", "GSM1099490" ], "type": "dose", "id": "GDS4623_6" }, { "dataset_id": "GDS4623", "description": "10 mg/kg", "sample_id": [ "GSM1099482", "GSM1099483", "GSM1099493", "GSM1099494" ], "type": "dose", "id": "GDS4623_7" }, { "dataset_id": "GDS4623", "description": "100 mg/kg", "sample_id": [ "GSM1099485", "GSM1099486", "GSM1099496", "GSM1099497" ], "type": "dose", "id": "GDS4623_8" }, { "dataset_id": "GDS4623", "description": "frontal cortex", "sample_id": [ "GSM1099476", "GSM1099477", "GSM1099478", "GSM1099479", "GSM1099480", "GSM1099481", "GSM1099482", "GSM1099483", "GSM1099485", "GSM1099486" ], "type": "tissue", "id": "GDS4623_9" }, { "dataset_id": "GDS4623", "description": "striatum", "sample_id": [ "GSM1099487", "GSM1099488", "GSM1099489", "GSM1099490", "GSM1099491", "GSM1099492", "GSM1099493", "GSM1099494", "GSM1099496", "GSM1099497" ], "type": "tissue", "id": "GDS4623_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4623", "version": 1.0, "instances": "20", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4623.tab", "compression": "gz" } ], [ [ "GDS4624.tab" ], { "title": "Unfolded Protein Response factor CHOP deficiency effect on Charcot-Marie-Tooth 1B sciatic nerves: developmental time course", "description": "Analysis of sciatic nerves from S63del/Chop-null animals from ages 5 days to 4 months. Deletion of serine 63 (P0S63del) causes demyelinating neuropathy similar to Charcot-Marie-Tooth 1B disease in humans. Results provide insight into molecular basis of myelination rescue in S63del/Chop-null nerves.", "type": "Expression profiling by array", "pubmed_id": "23547100", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE40610", "order": "none", "update_date": "May 20 2016", "subsets": [ { "dataset_id": "GDS4624", "description": "CHOP null", "sample_id": [ "GSM997842", "GSM997843", "GSM997834", "GSM997835", "GSM997826", "GSM997827" ], "type": "genotype/variation", "id": "GDS4624_1" }, { "dataset_id": "GDS4624", "description": "S63del", "sample_id": [ "GSM997844", "GSM997845", "GSM997836", "GSM997837", "GSM997828", "GSM997829" ], "type": "genotype/variation", "id": "GDS4624_2" }, { "dataset_id": "GDS4624", "description": "S63del/CHOP null", "sample_id": [ "GSM997846", "GSM997847", "GSM997838", "GSM997839", "GSM997830", "GSM997831" ], "type": "genotype/variation", "id": "GDS4624_3" }, { "dataset_id": "GDS4624", "description": "wildtype", "sample_id": [ "GSM997840", "GSM997841", "GSM997832", "GSM997833", "GSM997824", "GSM997825" ], "type": "genotype/variation", "id": "GDS4624_4" }, { "dataset_id": "GDS4624", "description": "postnatal day 5", "sample_id": [ "GSM997824", "GSM997825", "GSM997830", "GSM997831", "GSM997828", "GSM997829", "GSM997826", "GSM997827" ], "type": "age", "id": "GDS4624_5" }, { "dataset_id": "GDS4624", "description": "postnatal day 28", "sample_id": [ "GSM997832", "GSM997833", "GSM997838", "GSM997839", "GSM997836", "GSM997837", "GSM997834", "GSM997835" ], "type": "age", "id": "GDS4624_6" }, { "dataset_id": "GDS4624", "description": "4 months", "sample_id": [ "GSM997840", "GSM997841", "GSM997846", "GSM997847", "GSM997844", "GSM997845", "GSM997842", "GSM997843" ], "type": "age", "id": "GDS4624_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4624", "version": 1.0, "instances": "24", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4624.tab", "compression": "gz" } ], [ [ "GDS4625.tab" ], { "title": "Dorsal root ganglion in three peripheral neuropathic pain models: time course", "description": "Analysis of L4 and L5 dorsal root ganglion (DRGs) up to 40 days post-injury in three distinct peripheral neuropathic pain models: spared nerve injury (SNI), chronic constriction injury (CCI), and spinal nerve ligation injury (SNL). Results provide insight into putative pain modulating genes.", "type": "Expression profiling by array", "pubmed_id": [ "20724292", "22171041" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE30691", "order": "none", "update_date": "May 20 2016", "subsets": [ { "dataset_id": "GDS4625", "description": "Spared Nerve Injury (sham control)", "sample_id": [ "GSM761269", "GSM761268", "GSM761267", "GSM761266", "GSM761265", "GSM761264", "GSM761263", "GSM761262", "GSM761261" ], "type": "protocol", "id": "GDS4625_1" }, { "dataset_id": "GDS4625", "description": "Spared Nerve Injury", "sample_id": [ "GSM761260", "GSM761259", "GSM761258", "GSM761257", "GSM761256", "GSM761255", "GSM761254", "GSM761253", "GSM761252", "GSM761251", "GSM761250", "GSM761249" ], "type": "protocol", "id": "GDS4625_2" }, { "dataset_id": "GDS4625", "description": "naive", "sample_id": [ "GSM761248", "GSM761247", "GSM761246" ], "type": "protocol", "id": "GDS4625_3" }, { "dataset_id": "GDS4625", "description": "Spinal Nerve Ligation (sham control)", "sample_id": [ "GSM761245", "GSM761244", "GSM761243", "GSM761242", "GSM761241", "GSM761240", "GSM761239", "GSM761238", "GSM761237" ], "type": "protocol", "id": "GDS4625_4" }, { "dataset_id": "GDS4625", "description": "Spinal Nerve Ligation", "sample_id": [ "GSM761236", "GSM761235", "GSM761234", "GSM761233", "GSM761232", "GSM761231", "GSM761230", "GSM761229", "GSM761228", "GSM761227", "GSM761226" ], "type": "protocol", "id": "GDS4625_5" }, { "dataset_id": "GDS4625", "description": "Chronic Constriction Injury", "sample_id": [ "GSM761225", "GSM761224", "GSM761223", "GSM761222", "GSM761221", "GSM761220", "GSM761219", "GSM761218", "GSM761217", "GSM761216", "GSM761215", "GSM761214" ], "type": "protocol", "id": "GDS4625_6" }, { "dataset_id": "GDS4625", "description": "day 0", "sample_id": [ "GSM761246", "GSM761247", "GSM761248" ], "type": "time", "id": "GDS4625_7" }, { "dataset_id": "GDS4625", "description": "day 3", "sample_id": [ "GSM761214", "GSM761215", "GSM761216", "GSM761226", "GSM761227", "GSM761228", "GSM761237", "GSM761238", "GSM761239", "GSM761249", "GSM761250", "GSM761251", "GSM761261", "GSM761262", "GSM761263" ], "type": "time", "id": "GDS4625_8" }, { "dataset_id": "GDS4625", "description": "day 7", "sample_id": [ "GSM761217", "GSM761218", "GSM761219", "GSM761229", "GSM761230", "GSM761231", "GSM761240", "GSM761241", "GSM761242", "GSM761252", "GSM761253", "GSM761254", "GSM761264", "GSM761265", "GSM761266" ], "type": "time", "id": "GDS4625_9" }, { "dataset_id": "GDS4625", "description": "day 21", "sample_id": [ "GSM761220", "GSM761221", "GSM761222", "GSM761232", "GSM761233", "GSM761243", "GSM761244", "GSM761245", "GSM761255", "GSM761256", "GSM761257", "GSM761267", "GSM761268", "GSM761269" ], "type": "time", "id": "GDS4625_10" }, { "dataset_id": "GDS4625", "description": "day 40", "sample_id": [ "GSM761223", "GSM761224", "GSM761225", "GSM761234", "GSM761235", "GSM761236", "GSM761258", "GSM761259", "GSM761260" ], "type": "time", "id": "GDS4625_11" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS4625", "version": 1.0, "instances": "56", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4625.tab", "compression": "gz" } ], [ [ "GDS463.tab" ], { "title": "Oxidative stress induced by allylamine", "description": "Analysis of Sprague Dawley thoracic aorta response to repreated oxidative stress induced via administration of 35 or 70 mg/kg allylamine for 20 days.", "type": "Expression profiling by array", "pubmed_id": "15910882", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE610", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS463", "description": "0 mg/kg", "sample_id": [ "GSM9249" ], "type": "dose", "id": "GDS463_1" }, { "dataset_id": "GDS463", "description": "35 mg/kg", "sample_id": [ "GSM9246" ], "type": "dose", "id": "GDS463_2" }, { "dataset_id": "GDS463", "description": "70 mg/kg", "sample_id": [ "GSM9248" ], "type": "dose", "id": "GDS463_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS463", "version": 1.0, "instances": "3", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS463.tab", "compression": "gz" } ], [ [ "GDS4659.tab" ], { "title": "In vitro platelet RNA transfer model", "description": "Analysis of acute monocytic leukemia THP-1 cells activated with Pam3CSK4 and co-cultured for up to 24hr with platelet-like particles (PLPs) isolated from MEG-01 megakaryoblastic cells. Results provide insight into molecular basis of intercellular transfer of platelet RNA into other vascular cells.", "type": "Expression profiling by array", "pubmed_id": "22596260", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE38027", "order": "none", "update_date": "Jun 02 2015", "subsets": [ { "dataset_id": "GDS4659", "description": "resting", "sample_id": [ "GSM932554" ], "type": "protocol", "id": "GDS4659_1" }, { "dataset_id": "GDS4659", "description": "Pam3CSK4", "sample_id": [ "GSM932555" ], "type": "protocol", "id": "GDS4659_2" }, { "dataset_id": "GDS4659", "description": "Pam3CSK4 + 12hr co-incubation with PLPs", "sample_id": [ "GSM932556" ], "type": "protocol", "id": "GDS4659_3" }, { "dataset_id": "GDS4659", "description": "Pam3CSK4 + 24hr co-incubation with PLPs", "sample_id": [ "GSM932557" ], "type": "protocol", "id": "GDS4659_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4659", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4659.tab", "compression": "gz" } ], [ [ "GDS4664.tab" ], { "title": "Lymph node-positive, early stage cervical cancer", "description": "Analysis of primary cervical cancer tissue of patients with pelvic lymph node metastasis. Positive lymph nodes are an important prognostic factor in early-stage cervical cancer patients. Results provide insight into the molecular basis of pelvic lymph node metastasis in early cervical cancer.", "type": "Expression profiling by array", "pubmed_id": "21385933", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "transformed count", "reference_series": "GSE26511", "order": "none", "update_date": "Jul 09 2014", "subsets": [ { "dataset_id": "GDS4664", "description": "lymph node negative", "sample_id": [ "GSM651831", "GSM651832", "GSM651833", "GSM651834", "GSM651835", "GSM651836", "GSM651837", "GSM651838", "GSM651839", "GSM651840", "GSM651841", "GSM651842", "GSM651843", "GSM651844", "GSM651845", "GSM651846", "GSM651847", "GSM651848", "GSM651849", "GSM651850" ], "type": "disease state", "id": "GDS4664_1" }, { "dataset_id": "GDS4664", "description": "lymph node positive", "sample_id": [ "GSM651851", "GSM651852", "GSM651853", "GSM651854", "GSM651855", "GSM651856", "GSM651857", "GSM651858", "GSM651859", "GSM651860", "GSM651861", "GSM651862", "GSM651863", "GSM651864", "GSM651865", "GSM651866", "GSM651867", "GSM651868", "GSM651869" ], "type": "disease state", "id": "GDS4664_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4664", "version": 1.0, "instances": "39", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4664.tab", "compression": "gz" } ], [ [ "GDS4665.tab" ], { "title": "HeLa cell line response to chemotherapeutic Casiopeinas", "description": "Analysis of cervical cancer HeLa cells treated with casiopeinas II-gly (40\u00b5M) for 6 hours. Casiope\u00ednas are copper-containing compounds that can promote selective programmed cell death in cancer cells. Results provide insight into the molecular mechanisms underlying casiope\u00edna-induced apoptosis.", "type": "Expression profiling by array", "pubmed_id": "23382936", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE41827", "order": "none", "update_date": "Jul 09 2014", "subsets": [ { "dataset_id": "GDS4665", "description": "control", "sample_id": [ "GSM1025049", "GSM1025050", "GSM1025051" ], "type": "agent", "id": "GDS4665_1" }, { "dataset_id": "GDS4665", "description": "Casiopeina-II-gly", "sample_id": [ "GSM1025052", "GSM1025053", "GSM1025054" ], "type": "agent", "id": "GDS4665_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4665", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4665.tab", "compression": "gz" } ], [ [ "GDS4669.tab" ], { "title": "Central nervous system cell types derived from UNC-93B-deficient induced pluripotent stem cells", "description": "Analysis of neurons and astrocytes derived from UNC-93B-deficient induced pluripotent stem cells (UNC93B-/- iPS) and from hESCs (H9). UNC-93B-/- neurons are highly susceptible to herpes simplex virus 1 (HSV-1) infection. Results provide insight into role of neurons in anti-HSV-1 immunity in the CNS.", "type": "Expression profiling by array", "pubmed_id": "23103873", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE40593", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4669", "description": "embryonic stem cell H9", "sample_id": [ "GSM997555", "GSM997556", "GSM997557", "GSM997563", "GSM997564", "GSM997565", "GSM997566", "GSM997567", "GSM997568" ], "type": "cell line", "id": "GDS4669_1" }, { "dataset_id": "GDS4669", "description": "UNC-93B-deficient-induced pluripotent stem", "sample_id": [ "GSM997569", "GSM997570", "GSM997571", "GSM997572" ], "type": "cell line", "id": "GDS4669_2" }, { "dataset_id": "GDS4669", "description": "undifferentiated", "sample_id": [ "GSM997555", "GSM997556", "GSM997557" ], "type": "cell type", "id": "GDS4669_3" }, { "dataset_id": "GDS4669", "description": "derived astrocytes", "sample_id": [ "GSM997563", "GSM997564", "GSM997565", "GSM997571", "GSM997572" ], "type": "cell type", "id": "GDS4669_4" }, { "dataset_id": "GDS4669", "description": "derived neurons CD44- EGFR-", "sample_id": [ "GSM997566", "GSM997567", "GSM997568", "GSM997569", "GSM997570" ], "type": "cell type", "id": "GDS4669_5" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS4669", "version": 1.0, "instances": "13", "variables": 39534, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4669.tab", "compression": "gz" } ], [ [ "GDS468.tab" ], { "title": "Thyroid hormone effect on cardiomyocytes", "description": "Analysis of effect of 48 hours exposure to thyroid hormone triiodothyronine (T3) and structural analogues DITPA and CGS on primary culture cardiomyocytes prepared from 18 day old fetus. Thyroid hormone may be useful in treatment of heart failure.", "type": "Expression profiling by array", "pubmed_id": "15148346", "platform": "GPL333", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4273", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE602", "order": "none", "update_date": "Nov 20 2003", "subsets": [ { "dataset_id": "GDS468", "description": "T3", "sample_id": [ "GSM9183" ], "type": "agent", "id": "GDS468_1" }, { "dataset_id": "GDS468", "description": "DITPA", "sample_id": [ "GSM9163" ], "type": "agent", "id": "GDS468_2" }, { "dataset_id": "GDS468", "description": "CGS", "sample_id": [ "GSM9188" ], "type": "agent", "id": "GDS468_3" } ], "taxid": "10116", "genes": 4205, "aggregation_function": "mean", "name": "GDS468", "version": 1.0, "instances": "3", "variables": 4207, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS468.tab", "compression": "gz" } ], [ [ "GDS469.tab" ], { "title": "Thyroid hormone effect on cardiomyocytes (dye-swap)", "description": "Analysis of effect of 48 hours exposure to thyroid hormone triiodothyronine (T3) and structural analogues DITPA and CGS on primary culture cardiomyocytes prepared from 18 day old fetus. Thyroid hormone may be useful in treatment of heart failure.", "type": "Expression profiling by array", "pubmed_id": "15148346", "platform": "GPL333", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4273", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE602", "order": "none", "update_date": "Nov 20 2003", "subsets": [ { "dataset_id": "GDS469", "description": "T3", "sample_id": [ "GSM9185" ], "type": "agent", "id": "GDS469_1" }, { "dataset_id": "GDS469", "description": "DITPA", "sample_id": [ "GSM9184" ], "type": "agent", "id": "GDS469_2" }, { "dataset_id": "GDS469", "description": "CGS", "sample_id": [ "GSM9189" ], "type": "agent", "id": "GDS469_3" } ], "taxid": "10116", "genes": 4205, "aggregation_function": "mean", "name": "GDS469", "version": 1.0, "instances": "3", "variables": 4207, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS469.tab", "compression": "gz" } ], [ [ "GDS47.tab" ], { "title": "Granulosa cell tumorigenesis (Mu11K-A)", "description": "Comparison of global changes in ovarian transcriptomes uniquely associated with either granulosa cell tumors or luteomas, and identification of new markers for this tumor phenotype. Luteinizing hormone hypersecreting mice studied.", "type": "Expression profiling by array", "pubmed_id": "12040011", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE499", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS47", "description": "CF-1 wild type", "sample_id": [ "GSM1742", "GSM1746" ], "type": "strain", "id": "GDS47_1" }, { "dataset_id": "GDS47", "description": "CF-1 LHCTP transgenic", "sample_id": [ "GSM1744", "GSM1748", "GSM1750" ], "type": "strain", "id": "GDS47_2" }, { "dataset_id": "GDS47", "description": "CF/B6 wild type", "sample_id": [ "GSM1752", "GSM1756" ], "type": "strain", "id": "GDS47_3" }, { "dataset_id": "GDS47", "description": "CF/B6 LHCTP transgenic", "sample_id": [ "GSM1754", "GSM1758" ], "type": "strain", "id": "GDS47_4" }, { "dataset_id": "GDS47", "description": "2 month", "sample_id": [ "GSM1742", "GSM1744", "GSM1752", "GSM1754" ], "type": "age", "id": "GDS47_5" }, { "dataset_id": "GDS47", "description": "5 month", "sample_id": [ "GSM1746", "GSM1748", "GSM1750", "GSM1756", "GSM1758" ], "type": "age", "id": "GDS47_6" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS47", "version": 1.0, "instances": "9", "variables": 5675, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS47.tab", "compression": "gz" } ], [ [ "GDS470.tab" ], { "title": "Cervical cancer", "description": "Expression profiling of normal and cancerous cervix tissue samples at stages 1B, 2A, 2B and 3B.", "type": "Expression profiling by array", "pubmed_id": "14654527", "platform": "GPL355", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10692", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE527", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS470", "description": "cervical cancer stage 1B", "sample_id": [ "GSM7838", "GSM7837", "GSM7836", "GSM7830", "GSM7858", "GSM7856", "GSM7854", "GSM7840", "GSM7828", "GSM7834", "GSM7855" ], "type": "disease state", "id": "GDS470_1" }, { "dataset_id": "GDS470", "description": "cervical cancer stage 2A", "sample_id": [ "GSM7820", "GSM7829", "GSM7839", "GSM7835", "GSM7831", "GSM7821", "GSM7827", "GSM7824" ], "type": "disease state", "id": "GDS470_2" }, { "dataset_id": "GDS470", "description": "cervical cancer stage 2B", "sample_id": [ "GSM7823", "GSM7857", "GSM7822", "GSM7825" ], "type": "disease state", "id": "GDS470_3" }, { "dataset_id": "GDS470", "description": "cervical cancer stage 3B", "sample_id": [ "GSM7832" ], "type": "disease state", "id": "GDS470_4" }, { "dataset_id": "GDS470", "description": "control", "sample_id": [ "GSM7841", "GSM7844", "GSM7843", "GSM7842", "GSM7846", "GSM7847", "GSM7848", "GSM7845" ], "type": "disease state", "id": "GDS470_5" } ], "taxid": "9606", "genes": 10141, "aggregation_function": "mean", "name": "GDS470", "version": 1.0, "instances": "32", "variables": 10143, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS470.tab", "compression": "gz" } ], [ [ "GDS4700.tab" ], { "title": "Colon cancer cell lines with acquired resistance to BRAF inhibitor", "description": "Analysis of HT29 and Colo205 parental colorectal cancer (CRC) cell lines and HT29 and Colo205 clones with acquired resistance to BRAF inhibitor PLX4720. BRAF is a protein kinase in the RAS/RAF/MEK/ERK pathway. Results provide insight into mechanisms of acquired resistance to BRAF inhibitors in CRC.", "type": "Expression profiling by array", "pubmed_id": "23251002", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE34299", "order": "none", "update_date": "Jun 24 2014", "subsets": [ { "dataset_id": "GDS4700", "description": "HT29 parental", "sample_id": [ "GSM846889" ], "type": "cell line", "id": "GDS4700_1" }, { "dataset_id": "GDS4700", "description": "HT29RC PLX4720 resistant", "sample_id": [ "GSM846890" ], "type": "cell line", "id": "GDS4700_2" }, { "dataset_id": "GDS4700", "description": "Colo205 parental", "sample_id": [ "GSM846891" ], "type": "cell line", "id": "GDS4700_3" }, { "dataset_id": "GDS4700", "description": "Colo205RC PLX4720 resistant", "sample_id": [ "GSM846892" ], "type": "cell line", "id": "GDS4700_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4700", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4700.tab", "compression": "gz" } ], [ [ "GDS471.tab" ], { "title": "Malaria resistance", "description": "Examination of molecular basis of malaria resistance. Spleens from malaria resistant recombinant congenic strains AcB55 and AcB61 compared with malaria susceptible A/J mice.", "type": "Expression profiling by array", "pubmed_id": "14595440", "platform": "GPL519", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15247", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "14", "value_type": "log ratio", "reference_series": "GSE709", "order": "none", "update_date": "Nov 20 2003", "subsets": [ { "dataset_id": "GDS471", "description": "AcB55", "sample_id": [ "GSM10997", "GSM10998", "GSM10999", "GSM11000", "GSM11001", "GSM11002" ], "type": "strain", "id": "GDS471_1" }, { "dataset_id": "GDS471", "description": "AcB61", "sample_id": [ "GSM11003", "GSM11004", "GSM11005", "GSM11006", "GSM11007", "GSM11008", "GSM11009", "GSM11010" ], "type": "strain", "id": "GDS471_2" } ], "taxid": "10090", "genes": 13461, "aggregation_function": "mean", "name": "GDS471", "version": 1.0, "instances": "14", "variables": 13463, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS471.tab", "compression": "gz" } ], [ [ "GDS4718.tab" ], { "title": "Colorectal cancer: homogenized tumor tissues", "description": "Analysis of homogenized colorectal cancer (CRC) tumors representing various stages and metastases. Results provide insight into predictive biomarkers of metastasis and treatment targets in CRC.", "type": "Expression profiling by array", "pubmed_id": "21270110", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "transformed count", "reference_series": "GSE21510", "order": "none", "update_date": "Dec 03 2013", "subsets": [ { "dataset_id": "GDS4718", "description": "no metastasis", "sample_id": [ "GSM549099", "GSM549100", "GSM549102", "GSM549104", "GSM549107", "GSM549108", "GSM549109", "GSM549110", "GSM549111", "GSM549113", "GSM549114", "GSM549115", "GSM549116", "GSM549118", "GSM549119", "GSM549120", "GSM549121", "GSM549122", "GSM549129", "GSM549131", "GSM549132", "GSM549133", "GSM549134", "GSM549136", "GSM549137", "GSM549139", "GSM549140", "GSM549142" ], "type": "disease state", "id": "GDS4718_1" }, { "dataset_id": "GDS4718", "description": "metastatic recurrence", "sample_id": [ "GSM549103", "GSM549117", "GSM549123", "GSM549124", "GSM549126", "GSM549128", "GSM549130", "GSM549138", "GSM549141" ], "type": "disease state", "id": "GDS4718_2" }, { "dataset_id": "GDS4718", "description": "metastasis", "sample_id": [ "GSM549101", "GSM549105", "GSM549106", "GSM549112", "GSM549125", "GSM549127", "GSM549135" ], "type": "disease state", "id": "GDS4718_3" }, { "dataset_id": "GDS4718", "description": "stage: 0", "sample_id": [ "GSM549121" ], "type": "other", "id": "GDS4718_4" }, { "dataset_id": "GDS4718", "description": "stage: 1", "sample_id": [ "GSM549102", "GSM549104", "GSM549108", "GSM549119", "GSM549133", "GSM549139" ], "type": "other", "id": "GDS4718_5" }, { "dataset_id": "GDS4718", "description": "stage: 2a", "sample_id": [ "GSM549099", "GSM549109", "GSM549110", "GSM549114", "GSM549122", "GSM549134", "GSM549136", "GSM549140", "GSM549123" ], "type": "other", "id": "GDS4718_6" }, { "dataset_id": "GDS4718", "description": "stage: 2b", "sample_id": [ "GSM549111", "GSM549113", "GSM549132", "GSM549137", "GSM549142", "GSM549124", "GSM549126", "GSM549128" ], "type": "other", "id": "GDS4718_7" }, { "dataset_id": "GDS4718", "description": "stage: 3b", "sample_id": [ "GSM549100", "GSM549107", "GSM549115", "GSM549116", "GSM549120", "GSM549131", "GSM549103", "GSM549117", "GSM549138", "GSM549141" ], "type": "other", "id": "GDS4718_8" }, { "dataset_id": "GDS4718", "description": "stage: 3c", "sample_id": [ "GSM549118", "GSM549129", "GSM549130" ], "type": "other", "id": "GDS4718_9" }, { "dataset_id": "GDS4718", "description": "stage: 4", "sample_id": [ "GSM549101", "GSM549105", "GSM549106", "GSM549112", "GSM549125", "GSM549127", "GSM549135" ], "type": "other", "id": "GDS4718_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4718", "version": 1.0, "instances": "44", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4718.tab", "compression": "gz" } ], [ [ "GDS4719.tab" ], { "title": "Systemic lupus erythematosus CD3+ T cells", "description": "Analysis of CD3-positive T cells isolated from 10 systemic lupus erythematosus (SLE) patients and 9 healthy controls. SLE is an autoimmune disease characterized by T cell dysfunction. Results provide insight into molecular mechanisms underlying SLE in T cells.", "type": "Expression profiling by array", "pubmed_id": "19201859", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE13887", "order": "none", "update_date": "Jan 07 2014", "subsets": [ { "dataset_id": "GDS4719", "description": "healthy control", "sample_id": [ "GSM349729", "GSM349730", "GSM349734", "GSM349739", "GSM349742", "GSM349743", "GSM349744", "GSM349745", "GSM349746" ], "type": "disease state", "id": "GDS4719_1" }, { "dataset_id": "GDS4719", "description": "systemic lupus erythematosus", "sample_id": [ "GSM349747", "GSM349748", "GSM349749", "GSM349764", "GSM349765", "GSM349766", "GSM349767", "GSM349768", "GSM349769", "GSM349770" ], "type": "disease state", "id": "GDS4719_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4719", "version": 1.0, "instances": "19", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4719.tab", "compression": "gz" } ], [ [ "GDS472.tab" ], { "title": "Muscle function and aging - female (HG-U133A)", "description": "Comparison of gene expression in vastus lateralis skeletal muscle biopsies in healthy young (20-29 year old) and older (65-71 year old) women", "type": "Expression profiling by array", "pubmed_id": "15036396", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE674", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS472", "description": "20-29 years", "sample_id": [ "GSM10374", "GSM10375", "GSM10376", "GSM10377", "GSM10378", "GSM10379", "GSM10380" ], "type": "age", "id": "GDS472_1" }, { "dataset_id": "GDS472", "description": "65-71 years", "sample_id": [ "GSM10381", "GSM10382", "GSM10383", "GSM10384", "GSM10385", "GSM10386", "GSM10387", "GSM10388" ], "type": "age", "id": "GDS472_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS472", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS472.tab", "compression": "gz" } ], [ [ "GDS473.tab" ], { "title": "Muscle function and aging - female (HG-U133B)", "description": "Comparison of gene expression in vastus lateralis skeletal muscle biopsies in healthy young (20-29 year old) and older (65-71 year old) women", "type": "Expression profiling by array", "pubmed_id": "15036396", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE674", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS473", "description": "20-29 years", "sample_id": [ "GSM10354", "GSM10355", "GSM10356", "GSM10359", "GSM10360", "GSM10361", "GSM10362" ], "type": "age", "id": "GDS473_1" }, { "dataset_id": "GDS473", "description": "65-71 years", "sample_id": [ "GSM10363", "GSM10364", "GSM10365", "GSM10366", "GSM10367", "GSM10368", "GSM10369", "GSM10370" ], "type": "age", "id": "GDS473_2" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS473", "version": 1.0, "instances": "15", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS473.tab", "compression": "gz" } ], [ [ "GDS4754.tab" ], { "title": "TYK2 and STAT1 silencing effect on JURKAT T-cell acute lymphoblastic leukemia cell line", "description": "Analysis of JURKAT cells transduced with TYK2 and STAT1 shRNAs. JAK tyrosine kinase TYK2 and downstream effector STAT1 promote survival of T-ALL cells. Results provide insight into the molecular mechanisms underlying TYK2-STAT1 pathway dependence in T-cell ALL.", "type": "Expression profiling by array", "pubmed_id": "23471820", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE44652", "order": "none", "update_date": "Mar 07 2014", "subsets": [ { "dataset_id": "GDS4754", "description": "shGFP control", "sample_id": [ "GSM1088394", "GSM1088395" ], "type": "protocol", "id": "GDS4754_1" }, { "dataset_id": "GDS4754", "description": "shLuc control", "sample_id": [ "GSM1088396", "GSM1088397" ], "type": "protocol", "id": "GDS4754_2" }, { "dataset_id": "GDS4754", "description": "shTYK2 knockdown", "sample_id": [ "GSM1088398", "GSM1088399", "GSM1088400", "GSM1088401" ], "type": "protocol", "id": "GDS4754_3" }, { "dataset_id": "GDS4754", "description": "shSTAT1 knockdown", "sample_id": [ "GSM1088402", "GSM1088403", "GSM1088404", "GSM1088405" ], "type": "protocol", "id": "GDS4754_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4754", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4754.tab", "compression": "gz" } ], [ [ "GDS4755.tab" ], { "title": "Hematopoietic cell response to Xist deficiency in females: time course", "description": "Analysis of hematopoietic cells from Xist-deficient females before disease (2 months old) and during myeloprolifeative neoplasm/myelodysplastic syndrome and chronic myelomonocytic leukemia-like disease (6 and 12 months old). Results provide insight into role of Xist as a suppressor of blood cancer.", "type": "Expression profiling by array", "pubmed_id": "23415223", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE43961", "order": "none", "update_date": "Mar 07 2014", "subsets": [ { "dataset_id": "GDS4755", "description": "Xist heterozgous (2lox/-) mutant", "sample_id": [ "GSM1075041", "GSM1075042", "GSM1075043", "GSM1075044", "GSM1075053", "GSM1075054", "GSM1075055", "GSM1075056" ], "type": "genotype/variation", "id": "GDS4755_1" }, { "dataset_id": "GDS4755", "description": "Xist wild-type (2lox/+)", "sample_id": [ "GSM1075045", "GSM1075046", "GSM1075047", "GSM1075048", "GSM1075049", "GSM1075050", "GSM1075051", "GSM1075052" ], "type": "genotype/variation", "id": "GDS4755_2" }, { "dataset_id": "GDS4755", "description": "Xist homozygous (-/-) mutant", "sample_id": [ "GSM1075057", "GSM1075058", "GSM1075059", "GSM1075060" ], "type": "genotype/variation", "id": "GDS4755_3" }, { "dataset_id": "GDS4755", "description": "B220+ B-lymphocytes", "sample_id": [ "GSM1075041", "GSM1075045", "GSM1075049", "GSM1075053", "GSM1075057" ], "type": "cell type", "id": "GDS4755_4" }, { "dataset_id": "GDS4755", "description": "CD11b+ myeloid cells", "sample_id": [ "GSM1075042", "GSM1075046", "GSM1075050", "GSM1075054", "GSM1075058" ], "type": "cell type", "id": "GDS4755_5" }, { "dataset_id": "GDS4755", "description": "LKS+CD34- hematopoietic stem cells", "sample_id": [ "GSM1075043", "GSM1075047", "GSM1075051", "GSM1075055", "GSM1075059" ], "type": "cell type", "id": "GDS4755_6" }, { "dataset_id": "GDS4755", "description": "Ter119+ erythroid cells", "sample_id": [ "GSM1075044", "GSM1075048", "GSM1075052", "GSM1075056", "GSM1075060" ], "type": "cell type", "id": "GDS4755_7" }, { "dataset_id": "GDS4755", "description": "2 months old", "sample_id": [ "GSM1075049", "GSM1075050", "GSM1075051", "GSM1075052", "GSM1075053", "GSM1075054", "GSM1075055", "GSM1075056" ], "type": "age", "id": "GDS4755_8" }, { "dataset_id": "GDS4755", "description": "6 months old", "sample_id": [ "GSM1075041", "GSM1075042", "GSM1075043", "GSM1075044", "GSM1075045", "GSM1075046", "GSM1075047", "GSM1075048" ], "type": "age", "id": "GDS4755_9" }, { "dataset_id": "GDS4755", "description": "12 months old", "sample_id": [ "GSM1075057", "GSM1075058", "GSM1075059", "GSM1075060" ], "type": "age", "id": "GDS4755_10" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4755", "version": 1.0, "instances": "20", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4755.tab", "compression": "gz" } ], [ [ "GDS4756.tab" ], { "title": "Bone marrow microenvironment effect on imatinib-treated chronic myeloid leukemia CD34+ cells", "description": "Analysis of CML cells treated with tyrosine kinase inhibitor (TKI) imatinib and BM mesenchymal stromal cells (MSCs). Coculture with MSCs protects the CML cells from TKI-mediated cell death and depletion. Results provide insight into microenvironmental protection of CML cells from TKI treatment.", "type": "Expression profiling by array", "pubmed_id": "23299311", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE43225", "order": "none", "update_date": "Mar 11 2014", "subsets": [ { "dataset_id": "GDS4756", "description": "imatinib", "sample_id": [ "GSM1058966", "GSM1058970", "GSM1058974" ], "type": "protocol", "id": "GDS4756_1" }, { "dataset_id": "GDS4756", "description": "mesenchymal stromal cell", "sample_id": [ "GSM1058967", "GSM1058971", "GSM1058975" ], "type": "protocol", "id": "GDS4756_2" }, { "dataset_id": "GDS4756", "description": "combined (IM + MSC)", "sample_id": [ "GSM1058968", "GSM1058972", "GSM1058976" ], "type": "protocol", "id": "GDS4756_3" }, { "dataset_id": "GDS4756", "description": "untreated", "sample_id": [ "GSM1058965", "GSM1058969", "GSM1058973" ], "type": "protocol", "id": "GDS4756_4" }, { "dataset_id": "GDS4756", "description": "bone marrow", "sample_id": [ "GSM1058966", "GSM1058965", "GSM1058968", "GSM1058967" ], "type": "tissue", "id": "GDS4756_5" }, { "dataset_id": "GDS4756", "description": "peripheral blood", "sample_id": [ "GSM1058970", "GSM1058969", "GSM1058972", "GSM1058971", "GSM1058974", "GSM1058973", "GSM1058976", "GSM1058975" ], "type": "tissue", "id": "GDS4756_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4756", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4756.tab", "compression": "gz" } ], [ [ "GDS4757.tab" ], { "title": "Corticosterone effect on hippocampus: dose response", "description": "Analysis of hippocampal CA1 from adrenalectomized F344 males maintained for 3 months with implanted corticosterone (CORT) pellets to produce low or intermediate (glucocorticoid receptor-activating) blood levels of CORT. Results provide insight into the effects of chronic CORT on the hippocampus.", "type": "Expression profiling by array", "pubmed_id": "23736296", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "transformed count", "reference_series": "GSE37618", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4757", "description": "sham-operated (intact)", "sample_id": [ "GSM923289", "GSM923290", "GSM923291", "GSM923292", "GSM923293", "GSM923294", "GSM923295", "GSM923296", "GSM923297", "GSM923298" ], "type": "protocol", "id": "GDS4757_1" }, { "dataset_id": "GDS4757", "description": "adrenalectomized", "sample_id": [ "GSM923299", "GSM923300", "GSM923301", "GSM923302", "GSM923303", "GSM923304", "GSM923305", "GSM923306", "GSM923307", "GSM923308", "GSM923309", "GSM923310", "GSM923311", "GSM923312", "GSM923313", "GSM923314", "GSM923315", "GSM923316", "GSM923317", "GSM923318", "GSM923319", "GSM923320", "GSM923321", "GSM923322", "GSM923323", "GSM923324", "GSM923325", "GSM923326", "GSM923327" ], "type": "protocol", "id": "GDS4757_2" }, { "dataset_id": "GDS4757", "description": "control", "sample_id": [ "GSM923289", "GSM923290", "GSM923291", "GSM923292", "GSM923293", "GSM923294", "GSM923295", "GSM923296", "GSM923297", "GSM923298" ], "type": "agent", "id": "GDS4757_3" }, { "dataset_id": "GDS4757", "description": "corticosterone", "sample_id": [ "GSM923299", "GSM923300", "GSM923301", "GSM923302", "GSM923303", "GSM923304", "GSM923305", "GSM923306", "GSM923307" ], "type": "agent", "id": "GDS4757_4" }, { "dataset_id": "GDS4757", "description": "corticosterone", "sample_id": [ "GSM923308", "GSM923309", "GSM923310", "GSM923311", "GSM923312", "GSM923313", "GSM923314", "GSM923315", "GSM923316", "GSM923317" ], "type": "agent", "id": "GDS4757_5" }, { "dataset_id": "GDS4757", "description": "corticosterone", "sample_id": [ "GSM923318", "GSM923319", "GSM923320", "GSM923321", "GSM923322", "GSM923323", "GSM923324", "GSM923325", "GSM923326", "GSM923327" ], "type": "agent", "id": "GDS4757_6" }, { "dataset_id": "GDS4757", "description": "control", "sample_id": [ "GSM923289", "GSM923290", "GSM923291", "GSM923292", "GSM923293", "GSM923294", "GSM923295", "GSM923296", "GSM923297", "GSM923298" ], "type": "dose", "id": "GDS4757_7" }, { "dataset_id": "GDS4757", "description": "low dose", "sample_id": [ "GSM923308", "GSM923309", "GSM923310", "GSM923311", "GSM923312", "GSM923313", "GSM923314", "GSM923315", "GSM923316", "GSM923317" ], "type": "dose", "id": "GDS4757_8" }, { "dataset_id": "GDS4757", "description": "low dose + short-term high dose (injected)", "sample_id": [ "GSM923318", "GSM923319", "GSM923320", "GSM923321", "GSM923322", "GSM923323", "GSM923324", "GSM923325", "GSM923326", "GSM923327" ], "type": "dose", "id": "GDS4757_9" }, { "dataset_id": "GDS4757", "description": "intermediate dose", "sample_id": [ "GSM923299", "GSM923300", "GSM923301", "GSM923302", "GSM923303", "GSM923304", "GSM923305", "GSM923306", "GSM923307" ], "type": "dose", "id": "GDS4757_10" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS4757", "version": 1.0, "instances": "39", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4757.tab", "compression": "gz" } ], [ [ "GDS4758.tab" ], { "title": "Postmortem Alzheimer's disease brains: Hisayama study", "description": "Analysis of postmortem brain tissues (frontal cortex, temporal cortex, hippocampus) from male and female Hisayama residents pathologically diagnosed as having Alzheimer's disease (AD) or an AD-like disorder. Results provide insight into the molecular mechanisms underlying AD brain pathology.", "type": "Expression profiling by array", "pubmed_id": "23595620", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "79", "value_type": "transformed count", "reference_series": "GSE36980", "order": "none", "update_date": "Mar 11 2014", "subsets": [ { "dataset_id": "GDS4758", "description": "Alzheimer's disease", "sample_id": [ "GSM907792", "GSM907793", "GSM907794", "GSM907795", "GSM907796", "GSM907797", "GSM907798", "GSM907799", "GSM907800", "GSM907801", "GSM907802", "GSM907803", "GSM907804", "GSM907805", "GSM907806", "GSM907825", "GSM907826", "GSM907827", "GSM907828", "GSM907829", "GSM907830", "GSM907831", "GSM907832", "GSM907833", "GSM907834", "GSM907854", "GSM907855", "GSM907856", "GSM907857", "GSM907858", "GSM907859", "GSM907860" ], "type": "disease state", "id": "GDS4758_1" }, { "dataset_id": "GDS4758", "description": "non-Alzheimer's disease", "sample_id": [ "GSM907807", "GSM907808", "GSM907809", "GSM907810", "GSM907811", "GSM907812", "GSM907813", "GSM907814", "GSM907815", "GSM907816", "GSM907817", "GSM907818", "GSM907819", "GSM907820", "GSM907821", "GSM907822", "GSM907823", "GSM907824", "GSM907835", "GSM907836", "GSM907837", "GSM907838", "GSM907839", "GSM907840", "GSM907841", "GSM907842", "GSM907843", "GSM907844", "GSM907845", "GSM907846", "GSM907847", "GSM907848", "GSM907849", "GSM907850", "GSM907851", "GSM907852", "GSM907853", "GSM907861", "GSM907862", "GSM907863", "GSM907864", "GSM907865", "GSM907866", "GSM907867", "GSM907868", "GSM907869", "GSM907870" ], "type": "disease state", "id": "GDS4758_2" }, { "dataset_id": "GDS4758", "description": "hippocampus", "sample_id": [ "GSM907870", "GSM907869", "GSM907868", "GSM907867", "GSM907866", "GSM907865", "GSM907864", "GSM907863", "GSM907862", "GSM907861", "GSM907860", "GSM907859", "GSM907858", "GSM907857", "GSM907856", "GSM907855", "GSM907854" ], "type": "tissue", "id": "GDS4758_3" }, { "dataset_id": "GDS4758", "description": "temporal cortex", "sample_id": [ "GSM907853", "GSM907852", "GSM907851", "GSM907850", "GSM907849", "GSM907848", "GSM907847", "GSM907846", "GSM907845", "GSM907844", "GSM907843", "GSM907842", "GSM907841", "GSM907840", "GSM907839", "GSM907838", "GSM907837", "GSM907836", "GSM907835", "GSM907834", "GSM907833", "GSM907832", "GSM907831", "GSM907830", "GSM907829", "GSM907828", "GSM907827", "GSM907826", "GSM907825" ], "type": "tissue", "id": "GDS4758_4" }, { "dataset_id": "GDS4758", "description": "frontal cortex", "sample_id": [ "GSM907824", "GSM907823", "GSM907822", "GSM907821", "GSM907820", "GSM907819", "GSM907818", "GSM907817", "GSM907816", "GSM907815", "GSM907814", "GSM907813", "GSM907812", "GSM907811", "GSM907810", "GSM907809", "GSM907808", "GSM907807", "GSM907806", "GSM907805", "GSM907804", "GSM907803", "GSM907802", "GSM907801", "GSM907800", "GSM907799", "GSM907798", "GSM907797", "GSM907796", "GSM907795", "GSM907794", "GSM907793", "GSM907792" ], "type": "tissue", "id": "GDS4758_5" }, { "dataset_id": "GDS4758", "description": "male", "sample_id": [ "GSM907792", "GSM907795", "GSM907801", "GSM907802", "GSM907804", "GSM907805", "GSM907806", "GSM907807", "GSM907813", "GSM907814", "GSM907816", "GSM907818", "GSM907819", "GSM907820", "GSM907822", "GSM907823", "GSM907825", "GSM907828", "GSM907832", "GSM907833", "GSM907834", "GSM907839", "GSM907840", "GSM907842", "GSM907843", "GSM907845", "GSM907846", "GSM907848", "GSM907851", "GSM907858", "GSM907859", "GSM907860", "GSM907864", "GSM907865", "GSM907868", "GSM907869", "GSM907870" ], "type": "gender", "id": "GDS4758_6" }, { "dataset_id": "GDS4758", "description": "female", "sample_id": [ "GSM907793", "GSM907794", "GSM907796", "GSM907797", "GSM907798", "GSM907799", "GSM907800", "GSM907803", "GSM907808", "GSM907809", "GSM907810", "GSM907811", "GSM907812", "GSM907815", "GSM907817", "GSM907821", "GSM907824", "GSM907826", "GSM907827", "GSM907829", "GSM907830", "GSM907831", "GSM907835", "GSM907836", "GSM907837", "GSM907838", "GSM907841", "GSM907844", "GSM907847", "GSM907849", "GSM907850", "GSM907852", "GSM907853", "GSM907854", "GSM907855", "GSM907856", "GSM907857", "GSM907861", "GSM907862", "GSM907863", "GSM907866", "GSM907867" ], "type": "gender", "id": "GDS4758_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4758", "version": 1.0, "instances": "79", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4758.tab", "compression": "gz" } ], [ [ "GDS4759.tab" ], { "title": "Embryonic primary cortical neuron response to knockdown of multiple autism candidate genes", "description": "Analysis of E16 primary cortical neuron cultures transduced with shRNA constructs of austism spectrum disorder (ASD)-implicated genes (ACGs): Mecp2, Mef2a, Mef2d, Fmr1, Nlgn1, Nlgn3, Pten, and Shank3. Results provide insight into common transcriptional networks underlying autism.", "type": "Expression profiling by array", "pubmed_id": "24238429", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE47150", "order": "none", "update_date": "Mar 13 2014", "subsets": [ { "dataset_id": "GDS4759", "description": "FMR1 shRNA", "sample_id": [ "GSM1145756", "GSM1145757", "GSM1145758", "GSM1145759" ], "type": "protocol", "id": "GDS4759_1" }, { "dataset_id": "GDS4759", "description": "MeCP2 shRNA", "sample_id": [ "GSM1145764", "GSM1145765", "GSM1145766", "GSM1145767" ], "type": "protocol", "id": "GDS4759_2" }, { "dataset_id": "GDS4759", "description": "NLGN1 shRNA", "sample_id": [ "GSM1145768", "GSM1145769", "GSM1145770", "GSM1145771" ], "type": "protocol", "id": "GDS4759_3" }, { "dataset_id": "GDS4759", "description": "NLGN3 shRNA", "sample_id": [ "GSM1145772", "GSM1145773", "GSM1145774", "GSM1145775" ], "type": "protocol", "id": "GDS4759_4" }, { "dataset_id": "GDS4759", "description": "PTEN shRNA", "sample_id": [ "GSM1145776", "GSM1145777", "GSM1145778", "GSM1145779" ], "type": "protocol", "id": "GDS4759_5" }, { "dataset_id": "GDS4759", "description": "SHANK3 shRNA", "sample_id": [ "GSM1145780", "GSM1145781", "GSM1145782" ], "type": "protocol", "id": "GDS4759_6" }, { "dataset_id": "GDS4759", "description": "med2d shRNA", "sample_id": [ "GSM1145783", "GSM1145784", "GSM1145785" ], "type": "protocol", "id": "GDS4759_7" }, { "dataset_id": "GDS4759", "description": "mef2a shRNA", "sample_id": [ "GSM1145786", "GSM1145787", "GSM1145788", "GSM1145789" ], "type": "protocol", "id": "GDS4759_8" }, { "dataset_id": "GDS4759", "description": "luciferase shRNA", "sample_id": [ "GSM1145760", "GSM1145761", "GSM1145762", "GSM1145763" ], "type": "protocol", "id": "GDS4759_9" }, { "dataset_id": "GDS4759", "description": "mock", "sample_id": [ "GSM1145942", "GSM1145943", "GSM1145944" ], "type": "protocol", "id": "GDS4759_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4759", "version": 1.0, "instances": "37", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4759.tab", "compression": "gz" } ], [ [ "GDS476.tab" ], { "title": "HCMV infection of foreskin fibroblasts", "description": "Expression profiles of foreskin fibroblasts at 12 time points beginning 30 minutes after infection by human cytomegalovirus (HCMV) and continuing until 48 hours after infection.", "type": "Expression profiling by array", "pubmed_id": "11711622", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE675", "order": "ordered", "update_date": "May 08 2008", "subsets": [ { "dataset_id": "GDS476", "description": "30 minute", "sample_id": [ "GSM10357" ], "type": "time", "id": "GDS476_1" }, { "dataset_id": "GDS476", "description": "60 minute", "sample_id": [ "GSM10372" ], "type": "time", "id": "GDS476_2" }, { "dataset_id": "GDS476", "description": "4 hour", "sample_id": [ "GSM10371" ], "type": "time", "id": "GDS476_3" }, { "dataset_id": "GDS476", "description": "6 hour", "sample_id": [ "GSM10373" ], "type": "time", "id": "GDS476_4" }, { "dataset_id": "GDS476", "description": "10 hour", "sample_id": [ "GSM10347" ], "type": "time", "id": "GDS476_5" }, { "dataset_id": "GDS476", "description": "12 hour", "sample_id": [ "GSM10348" ], "type": "time", "id": "GDS476_6" }, { "dataset_id": "GDS476", "description": "14 hour", "sample_id": [ "GSM10349" ], "type": "time", "id": "GDS476_7" }, { "dataset_id": "GDS476", "description": "16 hour", "sample_id": [ "GSM10350" ], "type": "time", "id": "GDS476_8" }, { "dataset_id": "GDS476", "description": "18 hour", "sample_id": [ "GSM10351" ], "type": "time", "id": "GDS476_9" }, { "dataset_id": "GDS476", "description": "20 hour", "sample_id": [ "GSM10352" ], "type": "time", "id": "GDS476_10" }, { "dataset_id": "GDS476", "description": "24 hour", "sample_id": [ "GSM10346" ], "type": "time", "id": "GDS476_11" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS476", "version": 1.0, "instances": "11", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS476.tab", "compression": "gz" } ], [ [ "GDS4760.tab" ], { "title": "True interval breast cancer", "description": "Analysis of true interval breast cancers (TIBCs; tumors appearing after a negative screening mammogram) and mammogram screen-detected breast cancers (SDBCs). The development and progression of TIBCs differ from those of SDBCs. Results provide insight into the molecular mechanisms underlying TIBCs.", "type": "Expression profiling by array", "pubmed_id": "24347552", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE47108", "order": "none", "update_date": "Mar 11 2014", "subsets": [ { "dataset_id": "GDS4760", "description": "true interval breast cancer", "sample_id": [ "GSM1145068", "GSM1145070", "GSM1145074", "GSM1145076", "GSM1145077" ], "type": "disease state", "id": "GDS4760_1" }, { "dataset_id": "GDS4760", "description": "screen-detected breast cancer", "sample_id": [ "GSM1145069", "GSM1145071", "GSM1145072", "GSM1145073", "GSM1145075" ], "type": "disease state", "id": "GDS4760_2" }, { "dataset_id": "GDS4760", "description": "phenotype: TN", "sample_id": [ "GSM1145068" ], "type": "genotype/variation", "id": "GDS4760_3" }, { "dataset_id": "GDS4760", "description": "phenotype: LumA", "sample_id": [ "GSM1145069", "GSM1145070", "GSM1145073", "GSM1145074", "GSM1145075" ], "type": "genotype/variation", "id": "GDS4760_4" }, { "dataset_id": "GDS4760", "description": "phenotype: LumB", "sample_id": [ "GSM1145072", "GSM1145076" ], "type": "genotype/variation", "id": "GDS4760_5" }, { "dataset_id": "GDS4760", "description": "phenotype: HER2+", "sample_id": [ "GSM1145071", "GSM1145077" ], "type": "genotype/variation", "id": "GDS4760_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4760", "version": 1.0, "instances": "10", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4760.tab", "compression": "gz" } ], [ [ "GDS4761.tab" ], { "title": "Breast cancer metastases from different anatomical sites: fine-needle aspiration biopsies", "description": "Analysis of breast cancer (BC) metastases from different anatomical sites collected prior to treatment. The anatomical location of the metastatic lesion is associated with length of survival post-recurrence. Results provide insight into molecular mechanisms underlying BC site-specific metastases.", "type": "Expression profiling by array", "pubmed_id": "24287398", "platform": "GPL10379", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "52378", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "91", "value_type": "transformed count", "reference_series": "GSE46141", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS4761", "description": "ascite metastasis", "sample_id": [ "GSM1124891" ], "type": "tissue", "id": "GDS4761_1" }, { "dataset_id": "GDS4761", "description": "bone metastasis", "sample_id": [ "GSM1124927", "GSM1124904", "GSM1124953", "GSM1124888", "GSM1124890" ], "type": "tissue", "id": "GDS4761_2" }, { "dataset_id": "GDS4761", "description": "local metastasis in the breast", "sample_id": [ "GSM1124933", "GSM1124882", "GSM1124910", "GSM1124919", "GSM1124898", "GSM1124905", "GSM1124932", "GSM1124903", "GSM1124869", "GSM1124870", "GSM1124884" ], "type": "tissue", "id": "GDS4761_3" }, { "dataset_id": "GDS4761", "description": "liver metastasis", "sample_id": [ "GSM1124946", "GSM1124868", "GSM1124895", "GSM1124944", "GSM1124908", "GSM1124867", "GSM1124947", "GSM1124951", "GSM1124957", "GSM1124921", "GSM1124902", "GSM1124878", "GSM1124897", "GSM1124945", "GSM1124939", "GSM1124952" ], "type": "tissue", "id": "GDS4761_4" }, { "dataset_id": "GDS4761", "description": "lung metastasis", "sample_id": [ "GSM1124914", "GSM1124900" ], "type": "tissue", "id": "GDS4761_5" }, { "dataset_id": "GDS4761", "description": "regional lymph node metastasis", "sample_id": [ "GSM1124940", "GSM1124948", "GSM1124907", "GSM1124949", "GSM1124938", "GSM1124936", "GSM1124875", "GSM1124885", "GSM1124906", "GSM1124874", "GSM1124887", "GSM1124881", "GSM1124886", "GSM1124942", "GSM1124955", "GSM1124880", "GSM1124911", "GSM1124956", "GSM1124926", "GSM1124941", "GSM1124950", "GSM1124924", "GSM1124894", "GSM1124896", "GSM1124918", "GSM1124920", "GSM1124954", "GSM1124899", "GSM1124901", "GSM1124928", "GSM1124922", "GSM1124915", "GSM1124935", "GSM1124912", "GSM1124871", "GSM1124917", "GSM1124930", "GSM1124943", "GSM1124931" ], "type": "tissue", "id": "GDS4761_6" }, { "dataset_id": "GDS4761", "description": "skin metastasis", "sample_id": [ "GSM1124913", "GSM1124937", "GSM1124879", "GSM1124923", "GSM1124873", "GSM1124893", "GSM1124889", "GSM1124876", "GSM1124925", "GSM1124883", "GSM1124929", "GSM1124909", "GSM1124934", "GSM1124916", "GSM1124872", "GSM1124877", "GSM1124892" ], "type": "tissue", "id": "GDS4761_7" } ], "taxid": "9606", "genes": 36059, "aggregation_function": "mean", "name": "GDS4761", "version": 1.0, "instances": "91", "variables": 36061, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4761.tab", "compression": "gz" } ], [ [ "GDS4762.tab" ], { "title": "Fibroblast response to coculture with basal breast cancer cells", "description": "Analysis of fibroblasts (HFF1, HFF2, Wi38, CCD1112Sk) and breast cancer epithelial cells (Cal51, MDA-MB-231) FACS-sorted from 6-day cocultures. Cancer-associated fibroblasts can promote tumor formation and growth. Results provide insight into tumor-fibroblast interactions involved in tumorigenicity.", "type": "Expression profiling by array", "pubmed_id": "24068959", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "80", "value_type": "count", "reference_series": "GSE41678", "order": "none", "update_date": "Mar 14 2014", "subsets": [ { "dataset_id": "GDS4762", "description": "monoculture: fibroblast CCD1112Sk", "sample_id": [ "GSM1022325", "GSM1022326", "GSM1022327" ], "type": "protocol", "id": "GDS4762_1" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast CCD1112Sk + epithelial Cal51", "sample_id": [ "GSM1022328", "GSM1022329", "GSM1022330", "GSM1022331", "GSM1022332", "GSM1022333" ], "type": "protocol", "id": "GDS4762_2" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast CCD1112Sk + epithelial MDAMB231", "sample_id": [ "GSM1022334", "GSM1022335", "GSM1022336", "GSM1022337", "GSM1022338", "GSM1022339" ], "type": "protocol", "id": "GDS4762_3" }, { "dataset_id": "GDS4762", "description": "monoculture: fibroblast Wi38", "sample_id": [ "GSM1022340", "GSM1022341", "GSM1022342", "GSM1022343" ], "type": "protocol", "id": "GDS4762_4" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast Wi38 + epithelial Cal51", "sample_id": [ "GSM1022344", "GSM1022345", "GSM1022346", "GSM1022347", "GSM1022348", "GSM1022349", "GSM1022350" ], "type": "protocol", "id": "GDS4762_5" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast Wi38 + epithelial MDAMB231", "sample_id": [ "GSM1022351", "GSM1022352", "GSM1022353", "GSM1022354", "GSM1022355", "GSM1022356", "GSM1022357", "GSM1022358" ], "type": "protocol", "id": "GDS4762_6" }, { "dataset_id": "GDS4762", "description": "monoculture: fibroblast HFF1", "sample_id": [ "GSM1022359", "GSM1022360", "GSM1022361", "GSM1022362" ], "type": "protocol", "id": "GDS4762_7" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast HFF1 + epithelial Cal51", "sample_id": [ "GSM1022363", "GSM1022364", "GSM1022365", "GSM1022366", "GSM1022367", "GSM1022368", "GSM1022369", "GSM1022370" ], "type": "protocol", "id": "GDS4762_8" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast HFF1 + epithelial MDAMB231", "sample_id": [ "GSM1022371", "GSM1022372", "GSM1022373", "GSM1022374", "GSM1022375", "GSM1022376" ], "type": "protocol", "id": "GDS4762_9" }, { "dataset_id": "GDS4762", "description": "monoculture: fibroblast HFFF2", "sample_id": [ "GSM1022377", "GSM1022378", "GSM1022379", "GSM1022380" ], "type": "protocol", "id": "GDS4762_10" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast HFFF2 + epithelial Cal51", "sample_id": [ "GSM1022381", "GSM1022382", "GSM1022383", "GSM1022384", "GSM1022385", "GSM1022386", "GSM1022387", "GSM1022388" ], "type": "protocol", "id": "GDS4762_11" }, { "dataset_id": "GDS4762", "description": "coculture: fibroblast HFFF2 + epithelial MDAMB231", "sample_id": [ "GSM1022389", "GSM1022390", "GSM1022391", "GSM1022392", "GSM1022393", "GSM1022394", "GSM1022395", "GSM1022396" ], "type": "protocol", "id": "GDS4762_12" }, { "dataset_id": "GDS4762", "description": "monoculture: epithelial Cal51", "sample_id": [ "GSM1022397", "GSM1022398", "GSM1022399", "GSM1022400" ], "type": "protocol", "id": "GDS4762_13" }, { "dataset_id": "GDS4762", "description": "monoculture: epithelial MDAMB231", "sample_id": [ "GSM1022401", "GSM1022402", "GSM1022403", "GSM1022404" ], "type": "protocol", "id": "GDS4762_14" }, { "dataset_id": "GDS4762", "description": "breast cancer cell (DsRed-tagged)", "sample_id": [ "GSM1022331", "GSM1022332", "GSM1022333", "GSM1022367", "GSM1022368", "GSM1022369", "GSM1022370", "GSM1022385", "GSM1022386", "GSM1022387", "GSM1022388", "GSM1022347", "GSM1022348", "GSM1022349", "GSM1022350", "GSM1022397", "GSM1022398", "GSM1022399", "GSM1022400", "GSM1022337", "GSM1022338", "GSM1022339", "GSM1022374", "GSM1022375", "GSM1022376", "GSM1022393", "GSM1022394", "GSM1022395", "GSM1022396", "GSM1022355", "GSM1022356", "GSM1022357", "GSM1022358", "GSM1022401", "GSM1022402", "GSM1022403", "GSM1022404" ], "type": "cell type", "id": "GDS4762_15" }, { "dataset_id": "GDS4762", "description": "fibroblast (ZsGreen-tagged)", "sample_id": [ "GSM1022328", "GSM1022329", "GSM1022330", "GSM1022334", "GSM1022335", "GSM1022336", "GSM1022325", "GSM1022326", "GSM1022327", "GSM1022363", "GSM1022364", "GSM1022365", "GSM1022366", "GSM1022371", "GSM1022372", "GSM1022373", "GSM1022359", "GSM1022360", "GSM1022361", "GSM1022362", "GSM1022381", "GSM1022382", "GSM1022383", "GSM1022384", "GSM1022389", "GSM1022390", "GSM1022391", "GSM1022392", "GSM1022377", "GSM1022378", "GSM1022379", "GSM1022380", "GSM1022344", "GSM1022345", "GSM1022346", "GSM1022351", "GSM1022352", "GSM1022353", "GSM1022354", "GSM1022340", "GSM1022341", "GSM1022342", "GSM1022343" ], "type": "cell type", "id": "GDS4762_16" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4762", "version": 1.0, "instances": "80", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4762.tab", "compression": "gz" } ], [ [ "GDS4763.tab" ], { "title": "HER2 and MYC overexpression effect on MCF10A-immortalized breast epithelial cell line", "description": "Analysis of MCF10A cells overexpressing the HER2 and MYC oncoproteins. HER2 and MYC are commonly co-amplified in breast cancer and associated with an aggressive phenotype. Results provide insight into the molecular basis of HER2 and MYC cooperation in the development of aggressive tumors.", "type": "Expression profiling by array", "pubmed_id": "24056965", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE43730", "order": "none", "update_date": "Mar 21 2014", "subsets": [ { "dataset_id": "GDS4763", "description": "vector control", "sample_id": [ "GSM1069759", "GSM1069760", "GSM1069761" ], "type": "protocol", "id": "GDS4763_1" }, { "dataset_id": "GDS4763", "description": "HER2 overexpression", "sample_id": [ "GSM1069762", "GSM1069763", "GSM1069764" ], "type": "protocol", "id": "GDS4763_2" }, { "dataset_id": "GDS4763", "description": "MYC overexpression", "sample_id": [ "GSM1069765", "GSM1069766" ], "type": "protocol", "id": "GDS4763_3" }, { "dataset_id": "GDS4763", "description": "HER2 and MYC overexpression", "sample_id": [ "GSM1069767", "GSM1069768", "GSM1069769" ], "type": "protocol", "id": "GDS4763_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4763", "version": 1.0, "instances": "11", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4763.tab", "compression": "gz" } ], [ [ "GDS4764.tab" ], { "title": "Dual specificity phosphatase-4 loss effect on basal-like breast cancer cell lines", "description": "Analysis of basal-like breast cancer (BLBC) cell lines following DUSP4-knockdown or MAP-ERK kinase (MEK)-inhibition with AZD6244/selumetinib (up to 24hr). Results provide insight into role of DUSP4 in promoting cancer stem cell-like phenotypes in BLBC.", "type": "Expression profiling by array", "pubmed_id": "23966295", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE41816", "order": "none", "update_date": "Mar 21 2014", "subsets": [ { "dataset_id": "GDS4764", "description": "SUM159PT", "sample_id": [ "GSM1024709", "GSM1024708", "GSM1024707", "GSM1024706", "GSM1024705", "GSM1024704", "GSM1024712", "GSM1024711", "GSM1024710", "GSM1024715", "GSM1024714", "GSM1024713" ], "type": "cell line", "id": "GDS4764_1" }, { "dataset_id": "GDS4764", "description": "MDA231", "sample_id": [ "GSM1024697", "GSM1024696", "GSM1024695", "GSM1024694", "GSM1024693", "GSM1024692", "GSM1024700", "GSM1024699", "GSM1024698", "GSM1024703", "GSM1024702", "GSM1024701" ], "type": "cell line", "id": "GDS4764_2" }, { "dataset_id": "GDS4764", "description": "BT549", "sample_id": [ "GSM1024721", "GSM1024720", "GSM1024719", "GSM1024718", "GSM1024717", "GSM1024716", "GSM1024724", "GSM1024723", "GSM1024722", "GSM1024727", "GSM1024726", "GSM1024725" ], "type": "cell line", "id": "GDS4764_3" }, { "dataset_id": "GDS4764", "description": "si DUSP4", "sample_id": [ "GSM1024719", "GSM1024720", "GSM1024721", "GSM1024695", "GSM1024696", "GSM1024697", "GSM1024707", "GSM1024708", "GSM1024709" ], "type": "genotype/variation", "id": "GDS4764_4" }, { "dataset_id": "GDS4764", "description": "si CONTROL", "sample_id": [ "GSM1024725", "GSM1024726", "GSM1024727", "GSM1024722", "GSM1024723", "GSM1024724", "GSM1024716", "GSM1024717", "GSM1024718", "GSM1024701", "GSM1024702", "GSM1024703", "GSM1024698", "GSM1024699", "GSM1024700", "GSM1024692", "GSM1024693", "GSM1024694", "GSM1024713", "GSM1024714", "GSM1024715", "GSM1024710", "GSM1024711", "GSM1024712", "GSM1024704", "GSM1024705", "GSM1024706" ], "type": "genotype/variation", "id": "GDS4764_5" }, { "dataset_id": "GDS4764", "description": "MEK inhibition (24hr)", "sample_id": [ "GSM1024725", "GSM1024726", "GSM1024727", "GSM1024701", "GSM1024702", "GSM1024703", "GSM1024713", "GSM1024714", "GSM1024715" ], "type": "protocol", "id": "GDS4764_6" }, { "dataset_id": "GDS4764", "description": "MEK inhibition (4hr)", "sample_id": [ "GSM1024722", "GSM1024723", "GSM1024724", "GSM1024698", "GSM1024699", "GSM1024700", "GSM1024710", "GSM1024711", "GSM1024712" ], "type": "protocol", "id": "GDS4764_7" }, { "dataset_id": "GDS4764", "description": "DMSO", "sample_id": [ "GSM1024716", "GSM1024717", "GSM1024718", "GSM1024719", "GSM1024720", "GSM1024721", "GSM1024692", "GSM1024693", "GSM1024694", "GSM1024695", "GSM1024696", "GSM1024697", "GSM1024704", "GSM1024705", "GSM1024706", "GSM1024707", "GSM1024708", "GSM1024709" ], "type": "protocol", "id": "GDS4764_8" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS4764", "version": 1.0, "instances": "36", "variables": 26600, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4764.tab", "compression": "gz" } ], [ [ "GDS4765.tab" ], { "title": "Breast adenocarcinoma MCF-7 cell line response to 27-Hydroxycholesterol and estradiol", "description": "Analysis of MCF-7 cells treated with 27HC in the presence of E2. 27HC, a primary metabolite of cholesterol and an estrogen receptor (ER) ligand, increases ER-dependent growth in mouse models of breast cancer. Results provide insight into a relationship between hypercholesterolemia and breast cancer.", "type": "Expression profiling by array", "pubmed_id": "24288332", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46924", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4765", "description": "17\u03b2-estradiol and 27-Hydroxycholesterol", "sample_id": [ "GSM1141235", "GSM1141236", "GSM1141237" ], "type": "agent", "id": "GDS4765_1" }, { "dataset_id": "GDS4765", "description": "ethanol and 27-Hydroxycholesterol", "sample_id": [ "GSM1141238", "GSM1141239", "GSM1141240" ], "type": "agent", "id": "GDS4765_2" }, { "dataset_id": "GDS4765", "description": "17\u03b2-estradiol and ethanol", "sample_id": [ "GSM1141241", "GSM1141242", "GSM1141243" ], "type": "agent", "id": "GDS4765_3" }, { "dataset_id": "GDS4765", "description": "ethanol", "sample_id": [ "GSM1141244", "GSM1141245", "GSM1141246" ], "type": "agent", "id": "GDS4765_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4765", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4765.tab", "compression": "gz" } ], [ [ "GDS4766.tab" ], { "title": "Pregnancy-associated breast cancer: laser capture microdissected epithelia and stroma", "description": "Analysis of malignant epithelia and tumor-associated stroma from patients with pregnancy-associated breast cancer (PABC). PABCs exhibit heightened aggressiveness compared to cancers in age-matched nonpregnant (non-PABC) women. Results provide insight into the molecular mechanisms underlying PABC.", "type": "Expression profiling by array", "pubmed_id": "23479404", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE31192", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4766", "description": "pregnancy-associated breast cancer", "sample_id": [ "GSM773292", "GSM773296", "GSM773294", "GSM773298", "GSM773290", "GSM773303", "GSM773302", "GSM773316", "GSM773315", "GSM773313", "GSM773314", "GSM773311", "GSM773307", "GSM773304", "GSM773301", "GSM773300", "GSM773285", "GSM773284", "GSM773297", "GSM773295" ], "type": "disease state", "id": "GDS4766_1" }, { "dataset_id": "GDS4766", "description": "non-pregnancy-associated breast cancer", "sample_id": [ "GSM773306", "GSM773305", "GSM773310", "GSM773308", "GSM773289", "GSM773286", "GSM773312", "GSM773309", "GSM773293", "GSM773291", "GSM773288", "GSM773287", "GSM773299" ], "type": "disease state", "id": "GDS4766_2" }, { "dataset_id": "GDS4766", "description": "stroma", "sample_id": [ "GSM773292", "GSM773296", "GSM773294", "GSM773303", "GSM773306", "GSM773310", "GSM773316", "GSM773315", "GSM773313", "GSM773307", "GSM773289", "GSM773301", "GSM773285", "GSM773312", "GSM773293", "GSM773297", "GSM773288" ], "type": "cell type", "id": "GDS4766_3" }, { "dataset_id": "GDS4766", "description": "epithelial", "sample_id": [ "GSM773298", "GSM773290", "GSM773302", "GSM773305", "GSM773308", "GSM773314", "GSM773311", "GSM773304", "GSM773286", "GSM773300", "GSM773284", "GSM773309", "GSM773291", "GSM773295", "GSM773287", "GSM773299" ], "type": "cell type", "id": "GDS4766_4" }, { "dataset_id": "GDS4766", "description": "normal", "sample_id": [ "GSM773294", "GSM773296", "GSM773307", "GSM773313", "GSM773315", "GSM773298", "GSM773304", "GSM773314", "GSM773289", "GSM773312", "GSM773286", "GSM773299", "GSM773309" ], "type": "specimen", "id": "GDS4766_5" }, { "dataset_id": "GDS4766", "description": "tumor", "sample_id": [ "GSM773285", "GSM773292", "GSM773297", "GSM773301", "GSM773303", "GSM773316", "GSM773284", "GSM773290", "GSM773295", "GSM773300", "GSM773302", "GSM773311", "GSM773288", "GSM773293", "GSM773306", "GSM773310", "GSM773287", "GSM773291", "GSM773305", "GSM773308" ], "type": "specimen", "id": "GDS4766_6" }, { "dataset_id": "GDS4766", "description": "estrogen receptor positive", "sample_id": [ "GSM773292", "GSM773296", "GSM773294", "GSM773298", "GSM773290", "GSM773303", "GSM773302", "GSM773306", "GSM773305", "GSM773307", "GSM773304", "GSM773293", "GSM773291", "GSM773297", "GSM773295", "GSM773288", "GSM773287", "GSM773299" ], "type": "genotype/variation", "id": "GDS4766_7" }, { "dataset_id": "GDS4766", "description": "estrogen receptor negative", "sample_id": [ "GSM773310", "GSM773308", "GSM773316", "GSM773315", "GSM773313", "GSM773314", "GSM773311", "GSM773289", "GSM773286", "GSM773301", "GSM773300", "GSM773285", "GSM773284", "GSM773312", "GSM773309" ], "type": "genotype/variation", "id": "GDS4766_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4766", "version": 1.0, "instances": "33", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4766.tab", "compression": "gz" } ], [ [ "GDS4767.tab" ], { "title": "Pancreatic cancer model: saliva supernatant", "description": "Analysis of saliva from the Panc02/C57BL/6 orthotopic, syngeneic mouse pancreatic cancer model. The model was generated by implanting pancreatic cancer cell line Panc02 into the pancreas of syngeneic host C57BL/6. Results provide insight into salivary biomarkers for detection of pancreatic cancer.", "type": "Expression profiling by array", "pubmed_id": "23880764", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE47811", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4767", "description": "healthy", "sample_id": [ "GSM1159936", "GSM1159937", "GSM1159938", "GSM1159939", "GSM1159940", "GSM1159941" ], "type": "disease state", "id": "GDS4767_1" }, { "dataset_id": "GDS4767", "description": "pancreatic tumor", "sample_id": [ "GSM1159942", "GSM1159943", "GSM1159944", "GSM1159945", "GSM1159946", "GSM1159947" ], "type": "disease state", "id": "GDS4767_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4767", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4767.tab", "compression": "gz" } ], [ [ "GDS4768.tab" ], { "title": "Radiation chimera model: Trp53-null mammary tumors arising from irradiated, wildtype hosts", "description": "Analysis of Trp53-null mammary tumors arising from WT hosts cleared of mammary gland epithelium, irradiated, then transplanted with nonmalignant Trp53-null mammary tissue. Results provide insight into the influence of the radiation response of the microenvironment on the carcinogenic process.", "type": "Expression profiling by array", "pubmed_id": "23339125", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE42742", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4768", "description": "sham irradiated", "sample_id": [ "GSM1049023", "GSM1049024", "GSM1049025", "GSM1049026", "GSM1049027", "GSM1049028", "GSM1049029", "GSM1049030", "GSM1049031" ], "type": "protocol", "id": "GDS4768_1" }, { "dataset_id": "GDS4768", "description": "irradiated", "sample_id": [ "GSM1049032", "GSM1049033", "GSM1049034", "GSM1049035", "GSM1049036", "GSM1049037", "GSM1049038", "GSM1049039", "GSM1049040", "GSM1049041", "GSM1049042", "GSM1049043", "GSM1049044", "GSM1049045", "GSM1049046", "GSM1049047", "GSM1049048", "GSM1049049", "GSM1049050", "GSM1049051", "GSM1049052", "GSM1049053", "GSM1049054" ], "type": "protocol", "id": "GDS4768_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4768", "version": 1.0, "instances": "32", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4768.tab", "compression": "gz" } ], [ [ "GDS4769.tab" ], { "title": "Radiation chimera model: Trp53-null mammary tumors arising from irradiated, TGFb1 heterozygote hosts", "description": "Analysis of Trp53-null tumors arising from Tgfb1+/- hosts cleared of mammary gland epithelia, irradiated, then transplanted with nonmalignant Trp53-null mammary tissue. TGF-\u03b2 drives EMT and is highly induced by IR. Results provide insight into host biology contributions to radiation carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "23339125", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE42742", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4769", "description": "irradiated", "sample_id": [ "GSM1049071", "GSM1049064", "GSM1049072", "GSM1049065", "GSM1049066", "GSM1049067", "GSM1049068", "GSM1049073", "GSM1049074", "GSM1049069", "GSM1049075", "GSM1049076", "GSM1049077", "GSM1049070", "GSM1049078", "GSM1049061", "GSM1049062", "GSM1049063" ], "type": "protocol", "id": "GDS4769_1" }, { "dataset_id": "GDS4769", "description": "sham irradiated", "sample_id": [ "GSM1049060", "GSM1049056", "GSM1049058", "GSM1049059", "GSM1049057", "GSM1049055" ], "type": "protocol", "id": "GDS4769_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4769", "version": 1.0, "instances": "24", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4769.tab", "compression": "gz" } ], [ [ "GDS477.tab" ], { "title": "Coxsackievirus B3 pathogenesis (I)", "description": "Temporal analaysis of an in vitro model of coxsackievirus B3 (CVB3) infection. HeLa cells infected with either CVB3 or control PBS and samples examined at 0, 0.5, 1, 3, 5, 7 and 9 hours following treatment.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE712", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS477", "description": "control", "sample_id": [ "GSM11029", "GSM11030", "GSM11032", "GSM11034", "GSM11036", "GSM11038", "GSM11040" ], "type": "infection", "id": "GDS477_1" }, { "dataset_id": "GDS477", "description": "CVB3", "sample_id": [ "GSM11031", "GSM11033", "GSM11035", "GSM11037", "GSM11039", "GSM11041" ], "type": "infection", "id": "GDS477_2" }, { "dataset_id": "GDS477", "description": "0 hour", "sample_id": [ "GSM11029" ], "type": "time", "id": "GDS477_3" }, { "dataset_id": "GDS477", "description": "0.5 hour", "sample_id": [ "GSM11030", "GSM11031" ], "type": "time", "id": "GDS477_4" }, { "dataset_id": "GDS477", "description": "1 hour", "sample_id": [ "GSM11032", "GSM11033" ], "type": "time", "id": "GDS477_5" }, { "dataset_id": "GDS477", "description": "3 hour", "sample_id": [ "GSM11034", "GSM11035" ], "type": "time", "id": "GDS477_6" }, { "dataset_id": "GDS477", "description": "5 hour", "sample_id": [ "GSM11036", "GSM11037" ], "type": "time", "id": "GDS477_7" }, { "dataset_id": "GDS477", "description": "7 hour", "sample_id": [ "GSM11038", "GSM11039" ], "type": "time", "id": "GDS477_8" }, { "dataset_id": "GDS477", "description": "9 hour", "sample_id": [ "GSM11040", "GSM11041" ], "type": "time", "id": "GDS477_9" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS477", "version": 1.0, "instances": "13", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS477.tab", "compression": "gz" } ], [ [ "GDS4770.tab" ], { "title": "Cmah knockout effect on mdx model of Duchenne Muscular Dystrophy (DMD): cardiac muscle", "description": "Analysis of muscle from mdx males with a human-specific deletion in the Cmah (cytidine monophosphate-sialic acid hydroxylase) gene. Cmah-/-mdx mice show increased disease severity that better approximates DMD in humans. Results provide insight into the contributions of glycosylation defects to DMD.", "type": "Expression profiling by array", "pubmed_id": "20668298", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE16438", "order": "none", "update_date": "Feb 14 2014", "subsets": [ { "dataset_id": "GDS4770", "description": "wild type", "sample_id": [ "GSM413171", "GSM413172", "GSM413173" ], "type": "genotype/variation", "id": "GDS4770_1" }, { "dataset_id": "GDS4770", "description": "Cmah knockout", "sample_id": [ "GSM413174", "GSM413175", "GSM413176" ], "type": "genotype/variation", "id": "GDS4770_2" }, { "dataset_id": "GDS4770", "description": "Cmah knockout, mdx", "sample_id": [ "GSM413180", "GSM413181", "GSM413182" ], "type": "genotype/variation", "id": "GDS4770_3" }, { "dataset_id": "GDS4770", "description": "mdx", "sample_id": [ "GSM413177", "GSM413178", "GSM413179" ], "type": "genotype/variation", "id": "GDS4770_4" }, { "dataset_id": "GDS4770", "description": "C57BL/6J", "sample_id": [ "GSM413171", "GSM413172", "GSM413173", "GSM413174", "GSM413175", "GSM413176" ], "type": "strain", "id": "GDS4770_5" }, { "dataset_id": "GDS4770", "description": "C57BL6/10J", "sample_id": [ "GSM413180", "GSM413181", "GSM413182", "GSM413177", "GSM413178", "GSM413179" ], "type": "strain", "id": "GDS4770_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4770", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4770.tab", "compression": "gz" } ], [ [ "GDS4771.tab" ], { "title": "High fat diet effect on liver depleted of promyelocytic leukemia gene", "description": "Analysis of livers from promyelocytic leukemia (Pml)-knockouts fed a high fat diet (HFD) for 20 wks. The increased predisposition of Pml-KOs to HFD-induced obesity is associated with aspects of metabolic syndrome. Results provide insight into molecular basis of a metabolic prosurvival role for PML.", "type": "Expression profiling by array", "pubmed_id": "22886304", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE39220", "order": "none", "update_date": "Mar 06 2014", "subsets": [ { "dataset_id": "GDS4771", "description": "promyelocytic leukemia gene knockout", "sample_id": [ "GSM958303", "GSM958304", "GSM958305", "GSM958308", "GSM958309", "GSM958310" ], "type": "genotype/variation", "id": "GDS4771_1" }, { "dataset_id": "GDS4771", "description": "wild type", "sample_id": [ "GSM958302", "GSM958306", "GSM958307", "GSM958311", "GSM958312", "GSM958313" ], "type": "genotype/variation", "id": "GDS4771_2" }, { "dataset_id": "GDS4771", "description": "high fat diet", "sample_id": [ "GSM958305", "GSM958304", "GSM958303", "GSM958313", "GSM958312", "GSM958311" ], "type": "protocol", "id": "GDS4771_3" }, { "dataset_id": "GDS4771", "description": "low fat diet", "sample_id": [ "GSM958307", "GSM958306", "GSM958302", "GSM958310", "GSM958309", "GSM958308" ], "type": "protocol", "id": "GDS4771_4" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS4771", "version": 1.0, "instances": "12", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4771.tab", "compression": "gz" } ], [ [ "GDS4772.tab" ], { "title": "Dilated cardiomyopathy: left ventricle apex", "description": "Analysis of left ventricle (LV) from explanted hearts of male patients with dilated cardiomyopathy (DCM). DCM is characterized by systolic contractile dysfunction of the cardiac chambers. Results provide insight into molecular mechanisms underlying the changes in LV function observed in DCM.", "type": "Expression profiling by array", "pubmed_id": "24339868", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE42955", "order": "none", "update_date": "Mar 22 2014", "subsets": [ { "dataset_id": "GDS4772", "description": "dilated cardiomyopathy", "sample_id": [ "GSM1053919", "GSM1053918", "GSM1053941", "GSM1053938", "GSM1053937", "GSM1053917", "GSM1053935", "GSM1053933", "GSM1053926", "GSM1053925", "GSM1053924", "GSM1053915" ], "type": "disease state", "id": "GDS4772_1" }, { "dataset_id": "GDS4772", "description": "normal", "sample_id": [ "GSM1053942", "GSM1053940", "GSM1053939", "GSM1053929", "GSM1053922" ], "type": "disease state", "id": "GDS4772_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4772", "version": 1.0, "instances": "17", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4772.tab", "compression": "gz" } ], [ [ "GDS4773.tab" ], { "title": "Peripheral venous congestion model: endothelial cells", "description": "Analysis of venous endothelial cells (EC) following experimental venous hypertension treatment, a venous stress test designed to model peripheral venous congestion. Results provide insight into the molecular consequences of peripheral acute venous congestion in ECs.", "type": "Expression profiling by array", "pubmed_id": "24265434", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE38783", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4773", "description": "baseline", "sample_id": [ "GSM949431", "GSM949429", "GSM949427", "GSM949425", "GSM949423", "GSM949421", "GSM949419", "GSM949417", "GSM949437", "GSM949435", "GSM949433", "GSM949415" ], "type": "protocol", "id": "GDS4773_1" }, { "dataset_id": "GDS4773", "description": "venous stress test", "sample_id": [ "GSM949432", "GSM949430", "GSM949428", "GSM949426", "GSM949424", "GSM949422", "GSM949420", "GSM949418", "GSM949438", "GSM949436", "GSM949434", "GSM949416" ], "type": "protocol", "id": "GDS4773_2" }, { "dataset_id": "GDS4773", "description": "patient 1", "sample_id": [ "GSM949415", "GSM949416" ], "type": "individual", "id": "GDS4773_3" }, { "dataset_id": "GDS4773", "description": "patient 2", "sample_id": [ "GSM949417", "GSM949418" ], "type": "individual", "id": "GDS4773_4" }, { "dataset_id": "GDS4773", "description": "patient 3", "sample_id": [ "GSM949419", "GSM949420" ], "type": "individual", "id": "GDS4773_5" }, { "dataset_id": "GDS4773", "description": "patient 4", "sample_id": [ "GSM949421", "GSM949422" ], "type": "individual", "id": "GDS4773_6" }, { "dataset_id": "GDS4773", "description": "patient 5", "sample_id": [ "GSM949423", "GSM949424" ], "type": "individual", "id": "GDS4773_7" }, { "dataset_id": "GDS4773", "description": "patient 6", "sample_id": [ "GSM949425", "GSM949426" ], "type": "individual", "id": "GDS4773_8" }, { "dataset_id": "GDS4773", "description": "patient 7", "sample_id": [ "GSM949427", "GSM949428" ], "type": "individual", "id": "GDS4773_9" }, { "dataset_id": "GDS4773", "description": "patient 8", "sample_id": [ "GSM949429", "GSM949430" ], "type": "individual", "id": "GDS4773_10" }, { "dataset_id": "GDS4773", "description": "patient 9", "sample_id": [ "GSM949431", "GSM949432" ], "type": "individual", "id": "GDS4773_11" }, { "dataset_id": "GDS4773", "description": "patient 10", "sample_id": [ "GSM949433", "GSM949434" ], "type": "individual", "id": "GDS4773_12" }, { "dataset_id": "GDS4773", "description": "patient 11", "sample_id": [ "GSM949435", "GSM949436" ], "type": "individual", "id": "GDS4773_13" }, { "dataset_id": "GDS4773", "description": "patient 12", "sample_id": [ "GSM949437", "GSM949438" ], "type": "individual", "id": "GDS4773_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4773", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4773.tab", "compression": "gz" } ], [ [ "GDS4774.tab" ], { "title": "Maternal western-style high fat diet effect on liver of two-week-old offspring", "description": "Analysis of livers from PD14 offspring of C57BL/6 dams fed a Western-style high fat/high cholesterol diet (WSD). Maternal diet is associated with the development of metabolism-related diseases in offspring. Results provide insight into molecular impact of maternal WSD on male and female offspring.", "type": "Expression profiling by array", "pubmed_id": "24223833", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE46359", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4774", "description": "female offspring", "sample_id": [ "GSM1129146", "GSM1129147", "GSM1129148", "GSM1129149", "GSM1129150", "GSM1129151", "GSM1129137", "GSM1129138", "GSM1129139", "GSM1129140", "GSM1129141", "GSM1129142", "GSM1129143", "GSM1129144", "GSM1129145" ], "type": "gender", "id": "GDS4774_1" }, { "dataset_id": "GDS4774", "description": "male offspring", "sample_id": [ "GSM1129131", "GSM1129132", "GSM1129133", "GSM1129134", "GSM1129135", "GSM1129136", "GSM1129125", "GSM1129126", "GSM1129127", "GSM1129128", "GSM1129129", "GSM1129130" ], "type": "gender", "id": "GDS4774_2" }, { "dataset_id": "GDS4774", "description": "maternal western-style diet", "sample_id": [ "GSM1129146", "GSM1129147", "GSM1129148", "GSM1129149", "GSM1129150", "GSM1129151", "GSM1129131", "GSM1129132", "GSM1129133", "GSM1129134", "GSM1129135", "GSM1129136" ], "type": "protocol", "id": "GDS4774_3" }, { "dataset_id": "GDS4774", "description": "maternal low fat diet", "sample_id": [ "GSM1129137", "GSM1129138", "GSM1129139", "GSM1129140", "GSM1129141", "GSM1129142", "GSM1129143", "GSM1129144", "GSM1129145", "GSM1129125", "GSM1129126", "GSM1129127", "GSM1129128", "GSM1129129", "GSM1129130" ], "type": "protocol", "id": "GDS4774_4" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4774", "version": 1.0, "instances": "27", "variables": 25182, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4774.tab", "compression": "gz" } ], [ [ "GDS4775.tab" ], { "title": "Latent gammaherpesvirus 68 infection of various organs", "description": "Analysis of spleen, liver, and brain from C57Bl/6 males infected intranasally with gammaherpesvirus 68 (MHV68) or mutant MHV68 defective in the establishment of latency (ORF73.stop). Results provide insight into molecular alterations in host organs induced by latent herpesvirus infection.", "type": "Expression profiling by array", "pubmed_id": "24155394", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE51365", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4775", "description": "wild type virus MHV-68", "sample_id": [ "GSM1243462", "GSM1243463", "GSM1243464", "GSM1243471", "GSM1243472", "GSM1243473", "GSM1243480", "GSM1243481", "GSM1243482" ], "type": "infection", "id": "GDS4775_1" }, { "dataset_id": "GDS4775", "description": "mock", "sample_id": [ "GSM1243458", "GSM1243459", "GSM1243460", "GSM1243461", "GSM1243468", "GSM1243469", "GSM1243470", "GSM1243477", "GSM1243478", "GSM1243479" ], "type": "infection", "id": "GDS4775_2" }, { "dataset_id": "GDS4775", "description": "mutant virus ORF73.stop", "sample_id": [ "GSM1243465", "GSM1243466", "GSM1243467", "GSM1243474", "GSM1243475", "GSM1243476", "GSM1243483", "GSM1243484", "GSM1243485" ], "type": "infection", "id": "GDS4775_3" }, { "dataset_id": "GDS4775", "description": "spleen", "sample_id": [ "GSM1243475", "GSM1243474", "GSM1243476", "GSM1243469", "GSM1243468", "GSM1243470", "GSM1243472", "GSM1243471", "GSM1243473" ], "type": "tissue", "id": "GDS4775_4" }, { "dataset_id": "GDS4775", "description": "liver", "sample_id": [ "GSM1243466", "GSM1243465", "GSM1243467", "GSM1243460", "GSM1243459", "GSM1243458", "GSM1243461", "GSM1243462", "GSM1243463", "GSM1243464" ], "type": "tissue", "id": "GDS4775_5" }, { "dataset_id": "GDS4775", "description": "brain", "sample_id": [ "GSM1243485", "GSM1243484", "GSM1243483", "GSM1243479", "GSM1243478", "GSM1243477", "GSM1243482", "GSM1243481", "GSM1243480" ], "type": "tissue", "id": "GDS4775_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4775", "version": 1.0, "instances": "28", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4775.tab", "compression": "gz" } ], [ [ "GDS4776.tab" ], { "title": "Peroxisome Proliferator-Activated Receptor \u03b3 Coactivator-1 deficiency effect on adult cardiac biventricle", "description": "Analysis of heart from adults deficient for peroxisome proliferator-activated receptor \u03b3 coactivator-1 (PGC-1) \u03b1 and PGC-1\u03b2. Adult PGC-1\u03b1/\u03b2 deficient heart did not exhibit abnormal mitochondrial dynamics or heart failure. Results provide insight into role of PGC-1 coactivators in adult heart.", "type": "Expression profiling by array", "pubmed_id": "24366168", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE43798", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4776", "description": "PGC-1\u03b1 knockout", "sample_id": [ "GSM1071418", "GSM1071419", "GSM1071420", "GSM1071421", "GSM1071422" ], "type": "genotype/variation", "id": "GDS4776_1" }, { "dataset_id": "GDS4776", "description": "PGC-1\u03b1/\u03b2 knockout", "sample_id": [ "GSM1071423", "GSM1071424", "GSM1071425", "GSM1071426", "GSM1071427" ], "type": "genotype/variation", "id": "GDS4776_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4776", "version": 1.0, "instances": "10", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4776.tab", "compression": "gz" } ], [ [ "GDS4777.tab" ], { "title": "Freshly-isolated and cultured arterial and venous endothelial cells", "description": "Analysis of freshly-isolated endothelial cells (EC) from umbilical arteries and veins and cultured arterial and venous ECs from different vascular regions. Culturing leads to loss of the arterial phenotype. Results provide insight into molecular mechanisms underlying arteriovenous EC heterogeneity.", "type": "Expression profiling by array", "pubmed_id": "24108462", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE43475", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4777", "description": "artery", "sample_id": [ "GSM1063399", "GSM1063398", "GSM1063397", "GSM1063396", "GSM1063395", "GSM1063394", "GSM1063393", "GSM1063392", "GSM1063391", "GSM1063388", "GSM1063387", "GSM1063386", "GSM1063382", "GSM1063381", "GSM1063379", "GSM1063380", "GSM1063378", "GSM1063377", "GSM1063376", "GSM1063375", "GSM1063374" ], "type": "tissue", "id": "GDS4777_1" }, { "dataset_id": "GDS4777", "description": "vein", "sample_id": [ "GSM1063411", "GSM1063410", "GSM1063409", "GSM1063408", "GSM1063407", "GSM1063406", "GSM1063405", "GSM1063404", "GSM1063403", "GSM1063402", "GSM1063401", "GSM1063400", "GSM1063390", "GSM1063389", "GSM1063385", "GSM1063384", "GSM1063383" ], "type": "tissue", "id": "GDS4777_2" }, { "dataset_id": "GDS4777", "description": "aorta endothelial", "sample_id": [ "GSM1063377", "GSM1063378" ], "type": "cell type", "id": "GDS4777_3" }, { "dataset_id": "GDS4777", "description": "coronary artery endothelial", "sample_id": [ "GSM1063379", "GSM1063380" ], "type": "cell type", "id": "GDS4777_4" }, { "dataset_id": "GDS4777", "description": "hepatic artery endothelial", "sample_id": [ "GSM1063374", "GSM1063375", "GSM1063376" ], "type": "cell type", "id": "GDS4777_5" }, { "dataset_id": "GDS4777", "description": "hepatic vein endothelial", "sample_id": [ "GSM1063409", "GSM1063410", "GSM1063411" ], "type": "cell type", "id": "GDS4777_6" }, { "dataset_id": "GDS4777", "description": "iliac artery endothelial", "sample_id": [ "GSM1063381", "GSM1063382" ], "type": "cell type", "id": "GDS4777_7" }, { "dataset_id": "GDS4777", "description": "iliac vein endothelial", "sample_id": [ "GSM1063383", "GSM1063384", "GSM1063385" ], "type": "cell type", "id": "GDS4777_8" }, { "dataset_id": "GDS4777", "description": "pulmonary artery endothelial", "sample_id": [ "GSM1063386", "GSM1063387", "GSM1063388" ], "type": "cell type", "id": "GDS4777_9" }, { "dataset_id": "GDS4777", "description": "pulmonary vein endothelial", "sample_id": [ "GSM1063389", "GSM1063390" ], "type": "cell type", "id": "GDS4777_10" }, { "dataset_id": "GDS4777", "description": "umbilical artery endothelial", "sample_id": [ "GSM1063391", "GSM1063392", "GSM1063393", "GSM1063394", "GSM1063395", "GSM1063396", "GSM1063397", "GSM1063398", "GSM1063399" ], "type": "cell type", "id": "GDS4777_11" }, { "dataset_id": "GDS4777", "description": "umbilical vein endothelial", "sample_id": [ "GSM1063400", "GSM1063401", "GSM1063402", "GSM1063403", "GSM1063404", "GSM1063405", "GSM1063406", "GSM1063407", "GSM1063408" ], "type": "cell type", "id": "GDS4777_12" }, { "dataset_id": "GDS4777", "description": "cultured", "sample_id": [ "GSM1063377", "GSM1063378", "GSM1063379", "GSM1063380", "GSM1063374", "GSM1063375", "GSM1063376", "GSM1063409", "GSM1063410", "GSM1063411", "GSM1063381", "GSM1063382", "GSM1063383", "GSM1063384", "GSM1063385", "GSM1063386", "GSM1063387", "GSM1063388", "GSM1063389", "GSM1063390", "GSM1063391", "GSM1063392", "GSM1063393", "GSM1063394", "GSM1063395", "GSM1063400", "GSM1063401", "GSM1063402", "GSM1063403", "GSM1063404" ], "type": "protocol", "id": "GDS4777_13" }, { "dataset_id": "GDS4777", "description": "freshly isolated", "sample_id": [ "GSM1063396", "GSM1063397", "GSM1063398", "GSM1063399", "GSM1063405", "GSM1063406", "GSM1063407", "GSM1063408" ], "type": "protocol", "id": "GDS4777_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4777", "version": 1.0, "instances": "38", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4777.tab", "compression": "gz" } ], [ [ "GDS4778.tab" ], { "title": "Freshly-isolated umbilical cord arterial and venous endothelial cells", "description": "Analysis of freshly-isolated endothelial cells (EC) from umbilical arteries (HUAEC) and veins (HUVEC). ECs lining different vessels differ in morphology and function. Results provide insight into molecular mechanisms underlying arteriovenous EC heterogeneity.", "type": "Expression profiling by array", "pubmed_id": "24108462", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE43475", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4778", "description": "umbilical artery endothelial", "sample_id": [ "GSM1063396", "GSM1063397", "GSM1063398", "GSM1063399" ], "type": "cell type", "id": "GDS4778_1" }, { "dataset_id": "GDS4778", "description": "umbilical vein endothelial", "sample_id": [ "GSM1063405", "GSM1063406", "GSM1063407", "GSM1063408" ], "type": "cell type", "id": "GDS4778_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4778", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4778.tab", "compression": "gz" } ], [ [ "GDS4779.tab" ], { "title": "NOD/SCID/huALL xenotransplant model of pediatric acute leukemia", "description": "Analysis of xenograft leukemia samples from NOD/SCID mice transplanted with leukemia cells from patients with pediatric BCP-ALL. The xenograft samples displayed short or long \u201cTime To Leukemia\u201d (TTL). Results provide insight into molecular mechanisms underlying the distinct TTL phenotypes.", "type": "Expression profiling by array", "pubmed_id": "21295523", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE13576", "order": "none", "update_date": "Mar 07 2014", "subsets": [ { "dataset_id": "GDS4779", "description": "long time to leukemia", "sample_id": [ "GSM342516", "GSM342517", "GSM342518", "GSM342519", "GSM342520", "GSM342521", "GSM342522" ], "type": "disease state", "id": "GDS4779_1" }, { "dataset_id": "GDS4779", "description": "short time to leukemia", "sample_id": [ "GSM342523", "GSM342524", "GSM342525", "GSM342526", "GSM342527" ], "type": "disease state", "id": "GDS4779_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4779", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4779.tab", "compression": "gz" } ], [ [ "GDS478.tab" ], { "title": "Coxsackievirus B3 pathogenesis (II)", "description": "Temporal analysis of in vitro model of coxsackievirus B3 (CVB3) infection. HeLa cells infected with either CVB3, CVB3 and U0126 (blocks cytokines and metalloproteinases) or control PBS, and samples examined at 0, 0.5, 3 and 9 hours after treatment.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE697", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS478", "description": "control", "sample_id": [ "GSM10942", "GSM10943", "GSM10944", "GSM10945", "GSM10946", "GSM10947", "GSM10948", "GSM10949", "GSM10950", "GSM10951", "GSM10952", "GSM10953" ], "type": "infection", "id": "GDS478_1" }, { "dataset_id": "GDS478", "description": "CVB3", "sample_id": [ "GSM10705", "GSM10954", "GSM10955", "GSM10956", "GSM10957", "GSM10958", "GSM10959", "GSM10960", "GSM10964" ], "type": "infection", "id": "GDS478_2" }, { "dataset_id": "GDS478", "description": "CVB3 and U0126", "sample_id": [ "GSM10961", "GSM10962", "GSM10963" ], "type": "infection", "id": "GDS478_3" }, { "dataset_id": "GDS478", "description": "0 hour", "sample_id": [ "GSM10942", "GSM10943", "GSM10944" ], "type": "time", "id": "GDS478_4" }, { "dataset_id": "GDS478", "description": "0.5 hour", "sample_id": [ "GSM10951", "GSM10952", "GSM10953", "GSM10954", "GSM10955", "GSM10956" ], "type": "time", "id": "GDS478_5" }, { "dataset_id": "GDS478", "description": "3 hour", "sample_id": [ "GSM10945", "GSM10946", "GSM10947", "GSM10959", "GSM10960", "GSM10964" ], "type": "time", "id": "GDS478_6" }, { "dataset_id": "GDS478", "description": "9 hour", "sample_id": [ "GSM10948", "GSM10949", "GSM10950", "GSM10957", "GSM10958", "GSM10962", "GSM10963", "GSM10705", "GSM10961" ], "type": "time", "id": "GDS478_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS478", "version": 1.0, "instances": "24", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS478.tab", "compression": "gz" } ], [ [ "GDS4780.tab" ], { "title": "KLF14-deficient hearts during fasting", "description": "Analysis of Kruppel-like factor 15 (KLF15)-deficient and wild-type hearts following an 18 hour overnight fast. KLF15-deficient hearts exhibit reduced fatty acid oxidation and increased glucose oxidation. Results provide insight into the role of KLF14 in cardiac lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "24407292", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE53231", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4780", "description": "wild type", "sample_id": [ "GSM1288174", "GSM1288175", "GSM1288176", "GSM1288177" ], "type": "genotype/variation", "id": "GDS4780_1" }, { "dataset_id": "GDS4780", "description": "KLF14 null", "sample_id": [ "GSM1288178", "GSM1288179", "GSM1288180" ], "type": "genotype/variation", "id": "GDS4780_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4780", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4780.tab", "compression": "gz" } ], [ [ "GDS4781.tab" ], { "title": "Mycobacterium tuberculosis H37Rv-infected macrophages response to vitamin D", "description": "Analysis of Mtb H37Rv-infected THP-1 macrophages treated with the hormonal form of vitamin D (1,25D). Macrophages are the primary site of Mtb infection and are sites of 1,25D signaling. Results provide insight into the molecular basis of the 1,25D-enhanced macrophage response to Mtb infection.", "type": "Expression profiling by array", "pubmed_id": "23762029", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE52819", "order": "none", "update_date": "Mar 24 2014", "subsets": [ { "dataset_id": "GDS4781", "description": "uninfected", "sample_id": [ "GSM1276660", "GSM1276661", "GSM1276662", "GSM1276663", "GSM1276664", "GSM1276665" ], "type": "infection", "id": "GDS4781_1" }, { "dataset_id": "GDS4781", "description": "Mtb H37Rv", "sample_id": [ "GSM1276666", "GSM1276667", "GSM1276668", "GSM1276669", "GSM1276670", "GSM1276671" ], "type": "infection", "id": "GDS4781_2" }, { "dataset_id": "GDS4781", "description": "untreated", "sample_id": [ "GSM1276660", "GSM1276661", "GSM1276662", "GSM1276666", "GSM1276667", "GSM1276668" ], "type": "agent", "id": "GDS4781_3" }, { "dataset_id": "GDS4781", "description": "vitamin D", "sample_id": [ "GSM1276663", "GSM1276664", "GSM1276665", "GSM1276669", "GSM1276670", "GSM1276671" ], "type": "agent", "id": "GDS4781_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4781", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4781.tab", "compression": "gz" } ], [ [ "GDS4782.tab" ], { "title": "Cardiomyocyte-specific Gata-4 or Gata-6 knockout effect on adult heart during pressure overload", "description": "Analysis of hearts with cardiac-specific deletion of Gata-4 or Gata-6 during pressure overload. Deletion of each gene results in reduced response to pressure overload-induced hypertrophy. Results provide insight into overlapping and unique transcriptional programs of Gata-4 and Gata-6 in the heart.", "type": "Expression profiling by array", "pubmed_id": "24391969", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE52317", "order": "none", "update_date": "Mar 31 2014", "subsets": [ { "dataset_id": "GDS4782", "description": "wild type", "sample_id": [ "GSM1262798", "GSM1262797" ], "type": "genotype/variation", "id": "GDS4782_1" }, { "dataset_id": "GDS4782", "description": "Gata4-flox", "sample_id": [ "GSM1262800", "GSM1262799" ], "type": "genotype/variation", "id": "GDS4782_2" }, { "dataset_id": "GDS4782", "description": "Gata4-KO", "sample_id": [ "GSM1262803", "GSM1262802", "GSM1262801" ], "type": "genotype/variation", "id": "GDS4782_3" }, { "dataset_id": "GDS4782", "description": "Gata6-flox", "sample_id": [ "GSM1262805", "GSM1262804" ], "type": "genotype/variation", "id": "GDS4782_4" }, { "dataset_id": "GDS4782", "description": "Gata6-KO", "sample_id": [ "GSM1262808", "GSM1262807", "GSM1262806" ], "type": "genotype/variation", "id": "GDS4782_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4782", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4782.tab", "compression": "gz" } ], [ [ "GDS4783.tab" ], { "title": "Liver response to a high fat diet: time course", "description": "Analysis of livers of C57BL/6J animals after 10 weeks on a high fat diet (HFD). Livers were harvested every 4 hours up to Zeitgeber time 20. Circadian rhythms and cellular metabolism are intimately linked. Results provide insight into the molecular effect of HFD on the circadian clock.", "type": "Expression profiling by array", "pubmed_id": [ "24360271", "27418314" ], "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE52333", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4783", "description": "normal diet", "sample_id": [ "GSM1263225", "GSM1263226", "GSM1263227", "GSM1263231", "GSM1263232", "GSM1263233", "GSM1263237", "GSM1263238", "GSM1263239", "GSM1263243", "GSM1263244", "GSM1263245", "GSM1263249", "GSM1263250", "GSM1263251", "GSM1263255", "GSM1263256", "GSM1263257" ], "type": "protocol", "id": "GDS4783_1" }, { "dataset_id": "GDS4783", "description": "high fat diet", "sample_id": [ "GSM1263228", "GSM1263229", "GSM1263230", "GSM1263234", "GSM1263235", "GSM1263236", "GSM1263240", "GSM1263241", "GSM1263242", "GSM1263246", "GSM1263247", "GSM1263248", "GSM1263252", "GSM1263253", "GSM1263254", "GSM1263258", "GSM1263259", "GSM1263260" ], "type": "protocol", "id": "GDS4783_2" }, { "dataset_id": "GDS4783", "description": "ZT 0", "sample_id": [ "GSM1263225", "GSM1263226", "GSM1263227", "GSM1263228", "GSM1263229", "GSM1263230" ], "type": "time", "id": "GDS4783_3" }, { "dataset_id": "GDS4783", "description": "ZT 4", "sample_id": [ "GSM1263231", "GSM1263232", "GSM1263233", "GSM1263234", "GSM1263235", "GSM1263236" ], "type": "time", "id": "GDS4783_4" }, { "dataset_id": "GDS4783", "description": "ZT 8", "sample_id": [ "GSM1263237", "GSM1263238", "GSM1263239", "GSM1263240", "GSM1263241", "GSM1263242" ], "type": "time", "id": "GDS4783_5" }, { "dataset_id": "GDS4783", "description": "ZT 12", "sample_id": [ "GSM1263243", "GSM1263244", "GSM1263245", "GSM1263246", "GSM1263247", "GSM1263248" ], "type": "time", "id": "GDS4783_6" }, { "dataset_id": "GDS4783", "description": "ZT 16", "sample_id": [ "GSM1263249", "GSM1263250", "GSM1263251", "GSM1263252", "GSM1263253", "GSM1263254" ], "type": "time", "id": "GDS4783_7" }, { "dataset_id": "GDS4783", "description": "ZT 20", "sample_id": [ "GSM1263255", "GSM1263256", "GSM1263257", "GSM1263258", "GSM1263259", "GSM1263260" ], "type": "time", "id": "GDS4783_8" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4783", "version": 1.0, "instances": "36", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4783.tab", "compression": "gz" } ], [ [ "GDS4784.tab" ], { "title": "Post-pneumonectomy lung regeneration: time course", "description": "Analysis of right lung medial lobe, right lung cardiac lobe, and whole right lung following left pneumonectomy. Surgical resection of pulmonary tissue triggers a proregenerative stretch stimulus in the remaining lung. Results provide insight into molecular basis of stretch-induced lung regeneration.", "type": "Expression profiling by array", "pubmed_id": "23997171", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE39817", "order": "ordered", "update_date": "Mar 31 2014", "subsets": [ { "dataset_id": "GDS4784", "description": "whole right lung", "sample_id": [ "GSM979804", "GSM979805", "GSM979806", "GSM979807", "GSM979808", "GSM979809", "GSM979810" ], "type": "tissue", "id": "GDS4784_1" }, { "dataset_id": "GDS4784", "description": "medial lobe right lung", "sample_id": [ "GSM979790", "GSM979791", "GSM979792", "GSM979793", "GSM979794", "GSM979795", "GSM979796" ], "type": "tissue", "id": "GDS4784_2" }, { "dataset_id": "GDS4784", "description": "cardiac lobe right lung", "sample_id": [ "GSM979797", "GSM979798", "GSM979799", "GSM979800", "GSM979801", "GSM979802", "GSM979803" ], "type": "tissue", "id": "GDS4784_3" }, { "dataset_id": "GDS4784", "description": "day 0", "sample_id": [ "GSM979804", "GSM979790", "GSM979797" ], "type": "time", "id": "GDS4784_4" }, { "dataset_id": "GDS4784", "description": "day 3", "sample_id": [ "GSM979805", "GSM979791", "GSM979798" ], "type": "time", "id": "GDS4784_5" }, { "dataset_id": "GDS4784", "description": "day 7", "sample_id": [ "GSM979806", "GSM979792", "GSM979799" ], "type": "time", "id": "GDS4784_6" }, { "dataset_id": "GDS4784", "description": "day 14", "sample_id": [ "GSM979807", "GSM979793", "GSM979800" ], "type": "time", "id": "GDS4784_7" }, { "dataset_id": "GDS4784", "description": "day 28", "sample_id": [ "GSM979808", "GSM979794", "GSM979801" ], "type": "time", "id": "GDS4784_8" }, { "dataset_id": "GDS4784", "description": "day 56", "sample_id": [ "GSM979809", "GSM979810", "GSM979795", "GSM979796", "GSM979802", "GSM979803" ], "type": "time", "id": "GDS4784_9" }, { "dataset_id": "GDS4784", "description": "left pneumonectomy", "sample_id": [ "GSM979804", "GSM979805", "GSM979806", "GSM979807", "GSM979808", "GSM979809", "GSM979790", "GSM979791", "GSM979792", "GSM979793", "GSM979794", "GSM979795", "GSM979797", "GSM979798", "GSM979799", "GSM979800", "GSM979801", "GSM979802" ], "type": "protocol", "id": "GDS4784_10" }, { "dataset_id": "GDS4784", "description": "sham surgery", "sample_id": [ "GSM979810", "GSM979796", "GSM979803" ], "type": "protocol", "id": "GDS4784_11" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4784", "version": 1.0, "instances": "21", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4784.tab", "compression": "gz" } ], [ [ "GDS4785.tab" ], { "title": "Steroid receptor coactivator-2 deficiency effect on the liver", "description": "Analysis of livers from C57 females lacking Steroid receptor coactivator-2 (SRC-2). SRC-2 is a mediator of steroid receptor action. Results provide insight into the role of steroid receptor coactivators in hepatic metabolism.", "type": "Expression profiling by array", "pubmed_id": "16423883", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE55002", "order": "none", "update_date": "Mar 25 2014", "subsets": [ { "dataset_id": "GDS4785", "description": "wild type", "sample_id": [ "GSM1327827", "GSM1327828", "GSM1327829" ], "type": "genotype/variation", "id": "GDS4785_1" }, { "dataset_id": "GDS4785", "description": "SRC-2 null", "sample_id": [ "GSM1327830", "GSM1327831", "GSM1327832" ], "type": "genotype/variation", "id": "GDS4785_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4785", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4785.tab", "compression": "gz" } ], [ [ "GDS4786.tab" ], { "title": "HIV and tuberculosis co-infection: peripheral blood mononuclear cell", "description": "Analysis of PBMCs from HIV patients with and without M. tuberculosis (TB) co-infection. Co-infection with TB is a cause of death in HIV-infected individuals. Results provide insight into a molecular signature to distinguish HIV/TB co-infected patients from HIV mono-infected patients.", "type": "Expression profiling by array", "pubmed_id": "24587128", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE50834", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4786", "description": "HIV", "sample_id": [ "GSM1230902", "GSM1230903", "GSM1230904", "GSM1230905", "GSM1230906", "GSM1230907", "GSM1230908", "GSM1230909", "GSM1230910", "GSM1230911", "GSM1230912", "GSM1230913", "GSM1230914", "GSM1230915", "GSM1230916", "GSM1230917", "GSM1230918", "GSM1230919", "GSM1230920", "GSM1230921", "GSM1230922", "GSM1230923", "GSM1230924" ], "type": "infection", "id": "GDS4786_1" }, { "dataset_id": "GDS4786", "description": "HIV and TB", "sample_id": [ "GSM1230925", "GSM1230926", "GSM1230927", "GSM1230928", "GSM1230929", "GSM1230930", "GSM1230931", "GSM1230932", "GSM1230933", "GSM1230934", "GSM1230935", "GSM1230936", "GSM1230937", "GSM1230938", "GSM1230939", "GSM1230940", "GSM1230941", "GSM1230942", "GSM1230943", "GSM1230944", "GSM1230945" ], "type": "infection", "id": "GDS4786_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4786", "version": 1.0, "instances": "44", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4786.tab", "compression": "gz" } ], [ [ "GDS4787.tab" ], { "title": "Long non-coding RNA H19 depletion effect on myoblast cell line", "description": "Analysis of differentiating C2C12 myoblasts depleted for H19 long non-coding RNA (lncRNA). H19 depletion causes precocious muscle differentiation in vitro, a phenotype recapitulated by let-7 overexpression. Results provide insight into a role for H19 as a regulator of let-7 microRNAs.", "type": "Expression profiling by array", "pubmed_id": "24055342", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE49535", "order": "none", "update_date": "Mar 25 2014", "subsets": [ { "dataset_id": "GDS4787", "description": "control siRNA", "sample_id": [ "GSM1201434", "GSM1201435", "GSM1201436" ], "type": "agent", "id": "GDS4787_1" }, { "dataset_id": "GDS4787", "description": "H19 siRNA", "sample_id": [ "GSM1201437", "GSM1201438", "GSM1201439" ], "type": "agent", "id": "GDS4787_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4787", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4787.tab", "compression": "gz" } ], [ [ "GDS4788.tab" ], { "title": "H3K4me3 histone demethylase Fbxl10 overexpression effect on fibroblast cell line", "description": "Analysis of MEF cell line stably overexpressing Fbxl10. Stable overexpression of Fbxl10 leads to an increase in cell size but no changes to proliferation, mitosis, apoptosis, or global histone marks. Results provide insight into the regulatory role of Fbx110 in fibroblasts.", "type": "Expression profiling by array", "pubmed_id": "22825849", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34691", "order": "none", "update_date": "Mar 26 2014", "subsets": [ { "dataset_id": "GDS4788", "description": "control", "sample_id": [ "GSM853462", "GSM853463", "GSM853464" ], "type": "protocol", "id": "GDS4788_1" }, { "dataset_id": "GDS4788", "description": "FBxl110 overexpression", "sample_id": [ "GSM853465", "GSM853466", "GSM853467" ], "type": "protocol", "id": "GDS4788_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4788", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4788.tab", "compression": "gz" } ], [ [ "GDS479.tab" ], { "title": "Ionizing radiation effect on lymphoblastoid cells", "description": "Temporal analysis of effect of 3 Gy and 10 Gy ionizing radiation (IR) exposure on lymphoblastoid cells. Various time points up to 24 hours examined.", "type": "Expression profiling by array", "pubmed_id": "12915489", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE701", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS479", "description": "no irradiation", "sample_id": [ "GSM10965", "GSM10966" ], "type": "stress", "id": "GDS479_1" }, { "dataset_id": "GDS479", "description": "irradiation", "sample_id": [ "GSM10967", "GSM10972", "GSM10968", "GSM10973", "GSM10969", "GSM10974", "GSM10970", "GSM10975", "GSM10971", "GSM10976" ], "type": "stress", "id": "GDS479_2" }, { "dataset_id": "GDS479", "description": "control", "sample_id": [ "GSM10965", "GSM10966" ], "type": "dose", "id": "GDS479_3" }, { "dataset_id": "GDS479", "description": "3Gy", "sample_id": [ "GSM10967", "GSM10968", "GSM10969", "GSM10970", "GSM10971" ], "type": "dose", "id": "GDS479_4" }, { "dataset_id": "GDS479", "description": "10Gy", "sample_id": [ "GSM10972", "GSM10973", "GSM10974", "GSM10975", "GSM10976" ], "type": "dose", "id": "GDS479_5" }, { "dataset_id": "GDS479", "description": "0 hour", "sample_id": [ "GSM10965", "GSM10966" ], "type": "time", "id": "GDS479_6" }, { "dataset_id": "GDS479", "description": "1 hour", "sample_id": [ "GSM10967", "GSM10972" ], "type": "time", "id": "GDS479_7" }, { "dataset_id": "GDS479", "description": "2 hour", "sample_id": [ "GSM10968", "GSM10973" ], "type": "time", "id": "GDS479_8" }, { "dataset_id": "GDS479", "description": "6 hour", "sample_id": [ "GSM10969", "GSM10974" ], "type": "time", "id": "GDS479_9" }, { "dataset_id": "GDS479", "description": "12 hour", "sample_id": [ "GSM10970", "GSM10975" ], "type": "time", "id": "GDS479_10" }, { "dataset_id": "GDS479", "description": "24 hour", "sample_id": [ "GSM10971", "GSM10976" ], "type": "time", "id": "GDS479_11" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS479", "version": 1.0, "instances": "12", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS479.tab", "compression": "gz" } ], [ [ "GDS4791.tab" ], { "title": "Mitochondrial protease Clpp knockout effect on various tissues", "description": "Analysis of brain, testis, liver, and heart muscle from C57BL/6 animals deficient in mitochondrial protease Clpp. Loss of Clpp leads to infertility, hearing loss, and growth retardation. Results provide insight into the role of Clpp in growth and survival in a mammalian system.", "type": "Expression profiling by array", "pubmed_id": "23851121", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE40207", "order": "none", "update_date": "Apr 02 2014", "subsets": [ { "dataset_id": "GDS4791", "description": "testis", "sample_id": [ "GSM988362", "GSM988361", "GSM988360", "GSM988359", "GSM988358", "GSM988357" ], "type": "tissue", "id": "GDS4791_1" }, { "dataset_id": "GDS4791", "description": "liver", "sample_id": [ "GSM988368", "GSM988367", "GSM988366", "GSM988365", "GSM988364", "GSM988363" ], "type": "tissue", "id": "GDS4791_2" }, { "dataset_id": "GDS4791", "description": "heart", "sample_id": [ "GSM988386", "GSM988385", "GSM988384", "GSM988383", "GSM988382", "GSM988381" ], "type": "tissue", "id": "GDS4791_3" }, { "dataset_id": "GDS4791", "description": "brain", "sample_id": [ "GSM988380", "GSM988379", "GSM988378", "GSM988377", "GSM988376", "GSM988375" ], "type": "tissue", "id": "GDS4791_4" }, { "dataset_id": "GDS4791", "description": "ClpP knockout", "sample_id": [ "GSM988357", "GSM988358", "GSM988359", "GSM988363", "GSM988364", "GSM988365", "GSM988375", "GSM988376", "GSM988377", "GSM988381", "GSM988382", "GSM988383" ], "type": "genotype/variation", "id": "GDS4791_5" }, { "dataset_id": "GDS4791", "description": "wild type", "sample_id": [ "GSM988360", "GSM988361", "GSM988362", "GSM988366", "GSM988367", "GSM988368", "GSM988378", "GSM988379", "GSM988380", "GSM988384", "GSM988385", "GSM988386" ], "type": "genotype/variation", "id": "GDS4791_6" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS4791", "version": 1.0, "instances": "24", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4791.tab", "compression": "gz" } ], [ [ "GDS4794.tab" ], { "title": "Small cell lung cancers", "description": "Analysis of 23 clinical small cell lung cancer (SCLC) samples from patients undergoing pulmonary resection and 42 normal tissue samples including the lung. SCLC is a lung cancer subtype with poor prognosis. Results provide insight into the molecular mechanisms underlying SCLC.", "type": "Expression profiling by array", "pubmed_id": "23714854", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "65", "value_type": "count", "reference_series": "GSE43346", "order": "none", "update_date": "Apr 02 2014", "subsets": [ { "dataset_id": "GDS4794", "description": "small cell lung cancer", "sample_id": [ "GSM1060768", "GSM1060769", "GSM1060770", "GSM1060771", "GSM1060772", "GSM1060773", "GSM1060774", "GSM1060775", "GSM1060776", "GSM1060777", "GSM1060778", "GSM1060779", "GSM1060780", "GSM1060781", "GSM1060782", "GSM1060783", "GSM1060784", "GSM1060785", "GSM1060786", "GSM1060787", "GSM1060788", "GSM1060789", "GSM1060790" ], "type": "disease state", "id": "GDS4794_1" }, { "dataset_id": "GDS4794", "description": "normal", "sample_id": [ "GSM1060726", "GSM1060727", "GSM1060728", "GSM1060729", "GSM1060730", "GSM1060731", "GSM1060732", "GSM1060733", "GSM1060734", "GSM1060735", "GSM1060736", "GSM1060737", "GSM1060738", "GSM1060739", "GSM1060740", "GSM1060741", "GSM1060742", "GSM1060743", "GSM1060744", "GSM1060745", "GSM1060746", "GSM1060747", "GSM1060748", "GSM1060749", "GSM1060750", "GSM1060751", "GSM1060752", "GSM1060753", "GSM1060754", "GSM1060755", "GSM1060756", "GSM1060757", "GSM1060758", "GSM1060759", "GSM1060760", "GSM1060761", "GSM1060762", "GSM1060763", "GSM1060764", "GSM1060765", "GSM1060766", "GSM1060767" ], "type": "disease state", "id": "GDS4794_2" }, { "dataset_id": "GDS4794", "description": "lung carcinoma", "sample_id": [ "GSM1060768", "GSM1060769", "GSM1060770", "GSM1060771", "GSM1060772", "GSM1060773", "GSM1060774", "GSM1060775", "GSM1060776", "GSM1060777", "GSM1060778", "GSM1060779", "GSM1060780", "GSM1060781", "GSM1060782", "GSM1060783", "GSM1060784", "GSM1060785", "GSM1060786", "GSM1060787", "GSM1060788", "GSM1060789", "GSM1060790" ], "type": "tissue", "id": "GDS4794_3" }, { "dataset_id": "GDS4794", "description": "adipose", "sample_id": [ "GSM1060754" ], "type": "tissue", "id": "GDS4794_4" }, { "dataset_id": "GDS4794", "description": "adrenal gland", "sample_id": [ "GSM1060745" ], "type": "tissue", "id": "GDS4794_5" }, { "dataset_id": "GDS4794", "description": "artery", "sample_id": [ "GSM1060756" ], "type": "tissue", "id": "GDS4794_6" }, { "dataset_id": "GDS4794", "description": "bladder", "sample_id": [ "GSM1060746" ], "type": "tissue", "id": "GDS4794_7" }, { "dataset_id": "GDS4794", "description": "bone marrow", "sample_id": [ "GSM1060758" ], "type": "tissue", "id": "GDS4794_8" }, { "dataset_id": "GDS4794", "description": "breast", "sample_id": [ "GSM1060765" ], "type": "tissue", "id": "GDS4794_9" }, { "dataset_id": "GDS4794", "description": "cerebellum", "sample_id": [ "GSM1060732" ], "type": "tissue", "id": "GDS4794_10" }, { "dataset_id": "GDS4794", "description": "cerebral cortex", "sample_id": [ "GSM1060727" ], "type": "tissue", "id": "GDS4794_11" }, { "dataset_id": "GDS4794", "description": "colon", "sample_id": [ "GSM1060740" ], "type": "tissue", "id": "GDS4794_12" }, { "dataset_id": "GDS4794", "description": "diencephalon", "sample_id": [ "GSM1060730" ], "type": "tissue", "id": "GDS4794_13" }, { "dataset_id": "GDS4794", "description": "esophagus", "sample_id": [ "GSM1060737" ], "type": "tissue", "id": "GDS4794_14" }, { "dataset_id": "GDS4794", "description": "gallbadder", "sample_id": [ "GSM1060743" ], "type": "tissue", "id": "GDS4794_15" }, { "dataset_id": "GDS4794", "description": "heart", "sample_id": [ "GSM1060734" ], "type": "tissue", "id": "GDS4794_16" }, { "dataset_id": "GDS4794", "description": "hippocampus", "sample_id": [ "GSM1060729" ], "type": "tissue", "id": "GDS4794_17" }, { "dataset_id": "GDS4794", "description": "kidney", "sample_id": [ "GSM1060744" ], "type": "tissue", "id": "GDS4794_18" }, { "dataset_id": "GDS4794", "description": "liver", "sample_id": [ "GSM1060742" ], "type": "tissue", "id": "GDS4794_19" }, { "dataset_id": "GDS4794", "description": "lung", "sample_id": [ "GSM1060752" ], "type": "tissue", "id": "GDS4794_20" }, { "dataset_id": "GDS4794", "description": "lymph node", "sample_id": [ "GSM1060755" ], "type": "tissue", "id": "GDS4794_21" }, { "dataset_id": "GDS4794", "description": "macrophage", "sample_id": [ "GSM1060761" ], "type": "tissue", "id": "GDS4794_22" }, { "dataset_id": "GDS4794", "description": "monocyte", "sample_id": [ "GSM1060760" ], "type": "tissue", "id": "GDS4794_23" }, { "dataset_id": "GDS4794", "description": "ovary", "sample_id": [ "GSM1060767" ], "type": "tissue", "id": "GDS4794_24" }, { "dataset_id": "GDS4794", "description": "pancreas", "sample_id": [ "GSM1060741" ], "type": "tissue", "id": "GDS4794_25" }, { "dataset_id": "GDS4794", "description": "peripheral blood cells", "sample_id": [ "GSM1060759" ], "type": "tissue", "id": "GDS4794_26" }, { "dataset_id": "GDS4794", "description": "pons", "sample_id": [ "GSM1060728" ], "type": "tissue", "id": "GDS4794_27" }, { "dataset_id": "GDS4794", "description": "prostate", "sample_id": [ "GSM1060763" ], "type": "tissue", "id": "GDS4794_28" }, { "dataset_id": "GDS4794", "description": "salivary gland", "sample_id": [ "GSM1060747" ], "type": "tissue", "id": "GDS4794_29" }, { "dataset_id": "GDS4794", "description": "seminal vesicle", "sample_id": [ "GSM1060764" ], "type": "tissue", "id": "GDS4794_30" }, { "dataset_id": "GDS4794", "description": "skeletal muscle", "sample_id": [ "GSM1060733" ], "type": "tissue", "id": "GDS4794_31" }, { "dataset_id": "GDS4794", "description": "skin", "sample_id": [ "GSM1060735" ], "type": "tissue", "id": "GDS4794_32" }, { "dataset_id": "GDS4794", "description": "small intestine", "sample_id": [ "GSM1060739" ], "type": "tissue", "id": "GDS4794_33" }, { "dataset_id": "GDS4794", "description": "spleen", "sample_id": [ "GSM1060753" ], "type": "tissue", "id": "GDS4794_34" }, { "dataset_id": "GDS4794", "description": "stomach", "sample_id": [ "GSM1060738" ], "type": "tissue", "id": "GDS4794_35" }, { "dataset_id": "GDS4794", "description": "testis", "sample_id": [ "GSM1060762" ], "type": "tissue", "id": "GDS4794_36" }, { "dataset_id": "GDS4794", "description": "thalamus", "sample_id": [ "GSM1060731" ], "type": "tissue", "id": "GDS4794_37" }, { "dataset_id": "GDS4794", "description": "thymus", "sample_id": [ "GSM1060750" ], "type": "tissue", "id": "GDS4794_38" }, { "dataset_id": "GDS4794", "description": "thyroid", "sample_id": [ "GSM1060749" ], "type": "tissue", "id": "GDS4794_39" }, { "dataset_id": "GDS4794", "description": "tongue", "sample_id": [ "GSM1060736" ], "type": "tissue", "id": "GDS4794_40" }, { "dataset_id": "GDS4794", "description": "tonsil", "sample_id": [ "GSM1060748" ], "type": "tissue", "id": "GDS4794_41" }, { "dataset_id": "GDS4794", "description": "trachea", "sample_id": [ "GSM1060751" ], "type": "tissue", "id": "GDS4794_42" }, { "dataset_id": "GDS4794", "description": "uterus", "sample_id": [ "GSM1060766" ], "type": "tissue", "id": "GDS4794_43" }, { "dataset_id": "GDS4794", "description": "vein", "sample_id": [ "GSM1060757" ], "type": "tissue", "id": "GDS4794_44" }, { "dataset_id": "GDS4794", "description": "whole brain", "sample_id": [ "GSM1060726" ], "type": "tissue", "id": "GDS4794_45" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4794", "version": 1.0, "instances": "65", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4794.tab", "compression": "gz" } ], [ [ "GDS4795.tab" ], { "title": "MEKK2 and MEKK3 deficiency effect on CD26L(low)CD44(high) CD4 T cells", "description": "Analysis of CD26L(low)CD44(high) CD4(+) T cells deficient for MEKK2 and MEKK3, conserved members of the MEK kinase (MEKK) subgroup of the MAP3K superfamily. Results provide insight into the role of MEKK2 and MEKK3 in helper T cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "21333552", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE26987", "order": "none", "update_date": "Mar 21 2014", "subsets": [ { "dataset_id": "GDS4795", "description": "wild type", "sample_id": [ "GSM664756", "GSM664758" ], "type": "genotype/variation", "id": "GDS4795_1" }, { "dataset_id": "GDS4795", "description": "MEKK2/3 double KO", "sample_id": [ "GSM664755", "GSM664757" ], "type": "genotype/variation", "id": "GDS4795_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS4795", "version": 1.0, "instances": "4", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4795.tab", "compression": "gz" } ], [ [ "GDS4796.tab" ], { "title": "n-3 polyunsaturated fatty acid depletion effect on the liver", "description": "Analysis of livers from C57Bl/6J males fed an n-3 polyunsaturated fatty acid (n-3 PUFA) depleted diet for 3 months. Livers examined at the fed and fasting state. Result provide insight into the molecular mechanisms underlying the development of hepatic steatosis associated with n-3 PUFA depletion.", "type": "Expression profiling by array", "pubmed_id": "21853118", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE26986", "order": "none", "update_date": "Mar 26 2014", "subsets": [ { "dataset_id": "GDS4796", "description": "control diet", "sample_id": [ "GSM664751", "GSM664753" ], "type": "protocol", "id": "GDS4796_1" }, { "dataset_id": "GDS4796", "description": "n-3 PUFA depleted diet", "sample_id": [ "GSM664752", "GSM664754" ], "type": "protocol", "id": "GDS4796_2" }, { "dataset_id": "GDS4796", "description": "fed", "sample_id": [ "GSM664753", "GSM664754" ], "type": "stress", "id": "GDS4796_3" }, { "dataset_id": "GDS4796", "description": "starved", "sample_id": [ "GSM664751", "GSM664752" ], "type": "stress", "id": "GDS4796_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4796", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4796.tab", "compression": "gz" } ], [ [ "GDS4797.tab" ], { "title": "MCF10A mammary epithelial cell line transfected with miR-221/222 mimic", "description": "Analysis MCF10A cells transfected with synthetic oligo mimics for microRNAs (miRNAs) miR-221 and miR-222. Both miRNAs are abundant in the basal-like subtype of breast cancer but not in the luminal subtype. Results provide insight in to the role of miR-221/222 in the pathogenesis of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "21673316", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE29327", "order": "none", "update_date": "Mar 26 2014", "subsets": [ { "dataset_id": "GDS4797", "description": "miR-221 and miR-222 depletion", "sample_id": [ "GSM724630", "GSM724631", "GSM724632" ], "type": "protocol", "id": "GDS4797_1" }, { "dataset_id": "GDS4797", "description": "control", "sample_id": [ "GSM724633", "GSM724634", "GSM724635" ], "type": "protocol", "id": "GDS4797_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4797", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4797.tab", "compression": "gz" } ], [ [ "GDS4798.tab" ], { "title": "Hepatocyte nuclear factor 4 alpha depletion effect on hepatocellular carcinoma cell line", "description": "Analysis of HepG2 hepatocellular carcinoma cells depleted for HNF4alpha, a member of the nuclear receptor superfamily. HNF4alpha is essential for liver function and is linked to several diseases such as diabetes and hepatitis. Results provide insight into identification of HNF4alpha target genes.", "type": "Expression profiling by array", "pubmed_id": "20054869", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE29084", "order": "none", "update_date": "Apr 02 2014", "subsets": [ { "dataset_id": "GDS4798", "description": "HNF4a depletion", "sample_id": [ "GSM720617", "GSM720619" ], "type": "genotype/variation", "id": "GDS4798_1" }, { "dataset_id": "GDS4798", "description": "control", "sample_id": [ "GSM720616", "GSM720618" ], "type": "genotype/variation", "id": "GDS4798_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4798", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4798.tab", "compression": "gz" } ], [ [ "GDS4799.tab" ], { "title": "Cigarette smoke and second-hand smoke effects on obese male hearts", "description": "Analysis of heart from high-fat diet-induced obese (DIO) C57BL/6 males exposed to mainstream (MS) or sidestream (SS) cigarette smoke. Smoking and obesity are risk factors for heart disease. Results provide insight into molecular mechanisms underlying cardiac responses of smoke-exposed DIO animals.", "type": "Expression profiling by array", "pubmed_id": "23786483", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE47022", "order": "none", "update_date": "Apr 02 2014", "subsets": [ { "dataset_id": "GDS4799", "description": "regular weight", "sample_id": [ "GSM1143079", "GSM1143078", "GSM1143077", "GSM1143076", "GSM1143075", "GSM1143074", "GSM1143073", "GSM1143066", "GSM1143065", "GSM1143064", "GSM1143063", "GSM1143062", "GSM1143061", "GSM1143060", "GSM1143059", "GSM1143050", "GSM1143049", "GSM1143048", "GSM1143047", "GSM1143046", "GSM1143045", "GSM1143044", "GSM1143043" ], "type": "disease state", "id": "GDS4799_1" }, { "dataset_id": "GDS4799", "description": "diet induced obese", "sample_id": [ "GSM1143087", "GSM1143086", "GSM1143085", "GSM1143084", "GSM1143083", "GSM1143082", "GSM1143081", "GSM1143080", "GSM1143072", "GSM1143071", "GSM1143070", "GSM1143069", "GSM1143068", "GSM1143067", "GSM1143058", "GSM1143057", "GSM1143056", "GSM1143055", "GSM1143054", "GSM1143053", "GSM1143052", "GSM1143051" ], "type": "disease state", "id": "GDS4799_2" }, { "dataset_id": "GDS4799", "description": "filtered air sham control", "sample_id": [ "GSM1143051", "GSM1143052", "GSM1143053", "GSM1143054", "GSM1143055", "GSM1143056", "GSM1143057", "GSM1143058", "GSM1143043", "GSM1143044", "GSM1143045", "GSM1143046", "GSM1143047", "GSM1143048", "GSM1143049", "GSM1143050" ], "type": "protocol", "id": "GDS4799_3" }, { "dataset_id": "GDS4799", "description": "mainstream smoke", "sample_id": [ "GSM1143067", "GSM1143068", "GSM1143069", "GSM1143070", "GSM1143071", "GSM1143072", "GSM1143059", "GSM1143060", "GSM1143061", "GSM1143062", "GSM1143063", "GSM1143064", "GSM1143065", "GSM1143066" ], "type": "protocol", "id": "GDS4799_4" }, { "dataset_id": "GDS4799", "description": "sidestream smoke", "sample_id": [ "GSM1143080", "GSM1143081", "GSM1143082", "GSM1143083", "GSM1143084", "GSM1143085", "GSM1143086", "GSM1143087", "GSM1143073", "GSM1143074", "GSM1143075", "GSM1143076", "GSM1143077", "GSM1143078", "GSM1143079" ], "type": "protocol", "id": "GDS4799_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4799", "version": 1.0, "instances": "45", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4799.tab", "compression": "gz" } ], [ [ "GDS48.tab" ], { "title": "Granulosa cell tumorigenesis (Mu11K-B)", "description": "Comparison of global changes in ovarian transcriptomes uniquely associated with either granulosa cell tumors or luteomas, and identification of new markers for this tumor phenotype. Luteinizing hormone hypersecreting mice studied.", "type": "Expression profiling by array", "pubmed_id": "12040011", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE499", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS48", "description": "CF-1 wild type", "sample_id": [ "GSM1743", "GSM1747" ], "type": "strain", "id": "GDS48_1" }, { "dataset_id": "GDS48", "description": "CF-1 LHCTP transgenic", "sample_id": [ "GSM1745", "GSM1749", "GSM1751" ], "type": "strain", "id": "GDS48_2" }, { "dataset_id": "GDS48", "description": "CF/B6 wild type", "sample_id": [ "GSM1753", "GSM1757" ], "type": "strain", "id": "GDS48_3" }, { "dataset_id": "GDS48", "description": "CF/B6 LHCTP transgenic", "sample_id": [ "GSM1755", "GSM1759" ], "type": "strain", "id": "GDS48_4" }, { "dataset_id": "GDS48", "description": "2 month", "sample_id": [ "GSM1743", "GSM1745", "GSM1753", "GSM1755" ], "type": "age", "id": "GDS48_5" }, { "dataset_id": "GDS48", "description": "5 month", "sample_id": [ "GSM1747", "GSM1749", "GSM1751", "GSM1757", "GSM1759" ], "type": "age", "id": "GDS48_6" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS48", "version": 1.0, "instances": "9", "variables": 6163, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS48.tab", "compression": "gz" } ], [ [ "GDS480.tab" ], { "title": "Auxin (6 varieties) effect on seedlings", "description": "Analysis of the effect of 20 minute treatment with 6 different auxins on Columbia-0 seedlings.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL483", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21939", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE663", "order": "none", "update_date": "Oct 06 2004", "subsets": [ { "dataset_id": "GDS480", "description": "2,4-DP", "sample_id": [ "GSM9965" ], "type": "agent", "id": "GDS480_1" }, { "dataset_id": "GDS480", "description": "dicamba", "sample_id": [ "GSM9966" ], "type": "agent", "id": "GDS480_2" }, { "dataset_id": "GDS480", "description": "IAA", "sample_id": [ "GSM9967" ], "type": "agent", "id": "GDS480_3" }, { "dataset_id": "GDS480", "description": "NAA", "sample_id": [ "GSM9970" ], "type": "agent", "id": "GDS480_4" }, { "dataset_id": "GDS480", "description": "pichloram", "sample_id": [ "GSM9971" ], "type": "agent", "id": "GDS480_5" }, { "dataset_id": "GDS480", "description": "quinclorac", "sample_id": [ "GSM9972" ], "type": "agent", "id": "GDS480_6" } ], "taxid": "3702", "genes": 20214, "aggregation_function": "mean", "name": "GDS480", "version": 1.0, "instances": "6", "variables": 20216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS480.tab", "compression": "gz" } ], [ [ "GDS4800.tab" ], { "title": "H3K9me2 methyltransferase G9a depletion effect on breast cancer cell line", "description": "Analysis of MDA-MB231 breast cancer cells depleted for G9a, a methyltransferase that mediates histone H3 lysine-9 di-methylation (H3K9me2). G9a depletion inhibits migratory ability and invasiveness of MDA-MB231 cells. Results provide insight into role of G9a and H3K9me2 in breast cancer progression.", "type": "Expression profiling by array", "pubmed_id": [ "22406531", "23453623" ], "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34925", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4800", "description": "control", "sample_id": [ "GSM857535", "GSM857536", "GSM857537" ], "type": "genotype/variation", "id": "GDS4800_1" }, { "dataset_id": "GDS4800", "description": "G9a depletion", "sample_id": [ "GSM857538", "GSM857539", "GSM857540" ], "type": "genotype/variation", "id": "GDS4800_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4800", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4800.tab", "compression": "gz" } ], [ [ "GDS4801.tab" ], { "title": "Neural transcription factor SOX11 depletion effect on mantle cell lymphoma cell line", "description": "Analysis of Z138 mantle cell lymphoma (MCL) cells depleted for the neural transcription factor SOX11. SOX11 is overexpressed in aggressive lymphoid neoplasms mainly in MCL. Results provide insight into the role of SOX11 in the pathogenesis of MCL.", "type": "Expression profiling by array", "pubmed_id": [ "23321250", "25092176" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE34763", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4801", "description": "control", "sample_id": [ "GSM854802", "GSM854803" ], "type": "genotype/variation", "id": "GDS4801_1" }, { "dataset_id": "GDS4801", "description": "SOX11 depletion", "sample_id": [ "GSM854804", "GSM854805" ], "type": "genotype/variation", "id": "GDS4801_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4801", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4801.tab", "compression": "gz" } ], [ [ "GDS4802.tab" ], { "title": "WTX overexpression effect on kidney cell line", "description": "Analysis of HEK293 embryonic kidney cells overexpressing WTX, a tumor suppressor frequently inactivated in Wilms tumor. Ectopic expression of WTX in HEK293 cells activates p53 through lysine acetylation. Results provide insight into a role for WTX in the regulation of p53 activity.", "type": "Expression profiling by array", "pubmed_id": "22285752", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE34715", "order": "none", "update_date": "Apr 03 2014", "subsets": [ { "dataset_id": "GDS4802", "description": "WTX overexpression", "sample_id": [ "GSM853611", "GSM853613" ], "type": "genotype/variation", "id": "GDS4802_1" }, { "dataset_id": "GDS4802", "description": "control", "sample_id": [ "GSM853612", "GSM853614" ], "type": "genotype/variation", "id": "GDS4802_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4802", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4802.tab", "compression": "gz" } ], [ [ "GDS4803.tab" ], { "title": "Interleukin-17A effect on primary airway smooth muscle cells from asthmatics", "description": "Analysis of airway smooth muscle cells (ASM) from mild asthmatics after a 2hr interleukin-17A (IL-17A) treatment. IL-17A orchestrates airway inflammation by cooperating with and inducing proinflammatory cytokines. Results provide insight into immediate-early/primary response gene targets of IL-17A.", "type": "Expression profiling by array", "pubmed_id": "24393021", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE35643", "order": "none", "update_date": "Apr 03 2014", "subsets": [ { "dataset_id": "GDS4803", "description": "control", "sample_id": [ "GSM872418", "GSM872419", "GSM872420", "GSM872421", "GSM872422", "GSM872423" ], "type": "disease state", "id": "GDS4803_1" }, { "dataset_id": "GDS4803", "description": "mild asthma", "sample_id": [ "GSM872424", "GSM872425", "GSM872426", "GSM872427", "GSM872428", "GSM872429" ], "type": "disease state", "id": "GDS4803_2" }, { "dataset_id": "GDS4803", "description": "untreated", "sample_id": [ "GSM872418", "GSM872420", "GSM872422", "GSM872424", "GSM872426", "GSM872428" ], "type": "agent", "id": "GDS4803_3" }, { "dataset_id": "GDS4803", "description": "IL-17A", "sample_id": [ "GSM872419", "GSM872421", "GSM872423", "GSM872425", "GSM872427", "GSM872429" ], "type": "agent", "id": "GDS4803_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4803", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4803.tab", "compression": "gz" } ], [ [ "GDS4804.tab" ], { "title": "Desmin deficiency effect on young and adult skeletal muscles", "description": "Analysis of tibialis anterior muscle from 7-9 week old and 12-14 month old 129/Sv animals deficient in desmin. Skeletal muscle fibrosis develops in response to desmin depletion. Results provide insight into the molecular mechanisms underlying muscle fibrosis.", "type": "Expression profiling by array", "pubmed_id": "22442138", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE34388", "order": "none", "update_date": "Apr 03 2014", "subsets": [ { "dataset_id": "GDS4804", "description": "wild type", "sample_id": [ "GSM848131", "GSM848132", "GSM848133", "GSM848134", "GSM848135", "GSM848136", "GSM848137", "GSM848138", "GSM848139", "GSM848140" ], "type": "genotype/variation", "id": "GDS4804_1" }, { "dataset_id": "GDS4804", "description": "Desmin null", "sample_id": [ "GSM848141", "GSM848142", "GSM848143", "GSM848144", "GSM848145", "GSM848146", "GSM848147", "GSM848148", "GSM848149" ], "type": "genotype/variation", "id": "GDS4804_2" }, { "dataset_id": "GDS4804", "description": "7-9 wk", "sample_id": [ "GSM848131", "GSM848132", "GSM848133", "GSM848134", "GSM848135", "GSM848141", "GSM848142", "GSM848143", "GSM848144", "GSM848145" ], "type": "age", "id": "GDS4804_3" }, { "dataset_id": "GDS4804", "description": "12-14 mo", "sample_id": [ "GSM848136", "GSM848137", "GSM848138", "GSM848139", "GSM848140", "GSM848146", "GSM848147", "GSM848148", "GSM848149" ], "type": "age", "id": "GDS4804_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4804", "version": 1.0, "instances": "19", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4804.tab", "compression": "gz" } ], [ [ "GDS4805.tab" ], { "title": "Embryonic fibroblast response to overexpression of combinatorial transcription factor modules", "description": "Analysis of embryonic fibroblasts (MEFs) transduced with various combinations of transcription factors (TFs) shown to play a role in developmental cardiogenesis. Results provide insight into cardio-inducing capacity of the TFs to actuate cellular reprogramming of MEFs into cardiomyocyte-like cells.", "type": "Expression profiling by array", "pubmed_id": "23704920", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE44401", "order": "none", "update_date": "Apr 07 2014", "subsets": [ { "dataset_id": "GDS4805", "description": "M2rtTA transduced (negative control)", "sample_id": [ "GSM1084553", "GSM1084554", "GSM1084555" ], "type": "protocol", "id": "GDS4805_1" }, { "dataset_id": "GDS4805", "description": "M2rtTA, GATA4, TBX5, MEF2C transduced", "sample_id": [ "GSM1084556", "GSM1084557", "GSM1084558" ], "type": "protocol", "id": "GDS4805_2" }, { "dataset_id": "GDS4805", "description": "M2rtTA, GATA4, TBX5, MEF2C, Mesp1, SMARCD3 transduced", "sample_id": [ "GSM1084559", "GSM1084560", "GSM1084561" ], "type": "protocol", "id": "GDS4805_3" }, { "dataset_id": "GDS4805", "description": "M2rtTA, GATA4, TBX5, MEF2C, Mesp1, SMARCD3, MYOCD, SRF transduced", "sample_id": [ "GSM1084562", "GSM1084563", "GSM1084564" ], "type": "protocol", "id": "GDS4805_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4805", "version": 1.0, "instances": "12", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4805.tab", "compression": "gz" } ], [ [ "GDS4806.tab" ], { "title": "Pan-peroxisome proliferator-activated receptor agonist effect on various tissues: dose response", "description": "Analysis of liver, heart, kidney and skeletal muscle from animals treated with different doses (therapeutic, toxic) of PPM-201, a pan-peroxisome proliferator-activated receptor (pan-PPAR) agonist. Results provide insight into molecular bases of organ-specific toxicity induced by a panPPAR agonist.", "type": "Expression profiling by array", "pubmed_id": "23272042", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE31561", "order": "none", "update_date": "Apr 08 2014", "subsets": [ { "dataset_id": "GDS4806", "description": "vehicle", "sample_id": [ "GSM783280", "GSM783281", "GSM783282", "GSM783289", "GSM783290", "GSM783291", "GSM783298", "GSM783299", "GSM783300", "GSM783307", "GSM783308", "GSM783309" ], "type": "agent", "id": "GDS4806_1" }, { "dataset_id": "GDS4806", "description": "PPM-201", "sample_id": [ "GSM783283", "GSM783284", "GSM783285", "GSM783292", "GSM783293", "GSM783294", "GSM783301", "GSM783302", "GSM783303", "GSM783310", "GSM783311", "GSM783312", "GSM783286", "GSM783287", "GSM783288", "GSM783295", "GSM783296", "GSM783297", "GSM783304", "GSM783305", "GSM783306", "GSM783313", "GSM783314", "GSM783315" ], "type": "agent", "id": "GDS4806_2" }, { "dataset_id": "GDS4806", "description": "control", "sample_id": [ "GSM783280", "GSM783281", "GSM783282", "GSM783289", "GSM783290", "GSM783291", "GSM783298", "GSM783299", "GSM783300", "GSM783307", "GSM783308", "GSM783309" ], "type": "dose", "id": "GDS4806_3" }, { "dataset_id": "GDS4806", "description": "6 mg/kg", "sample_id": [ "GSM783283", "GSM783284", "GSM783285", "GSM783292", "GSM783293", "GSM783294", "GSM783301", "GSM783302", "GSM783303", "GSM783310", "GSM783311", "GSM783312" ], "type": "dose", "id": "GDS4806_4" }, { "dataset_id": "GDS4806", "description": "20 mg/kg", "sample_id": [ "GSM783286", "GSM783287", "GSM783288", "GSM783295", "GSM783296", "GSM783297", "GSM783304", "GSM783305", "GSM783306", "GSM783313", "GSM783314", "GSM783315" ], "type": "dose", "id": "GDS4806_5" }, { "dataset_id": "GDS4806", "description": "heart", "sample_id": [ "GSM783280", "GSM783281", "GSM783282", "GSM783283", "GSM783284", "GSM783285", "GSM783286", "GSM783287", "GSM783288" ], "type": "tissue", "id": "GDS4806_6" }, { "dataset_id": "GDS4806", "description": "kidney", "sample_id": [ "GSM783289", "GSM783290", "GSM783291", "GSM783292", "GSM783293", "GSM783294", "GSM783295", "GSM783296", "GSM783297" ], "type": "tissue", "id": "GDS4806_7" }, { "dataset_id": "GDS4806", "description": "liver", "sample_id": [ "GSM783298", "GSM783299", "GSM783300", "GSM783301", "GSM783302", "GSM783303", "GSM783304", "GSM783305", "GSM783306" ], "type": "tissue", "id": "GDS4806_8" }, { "dataset_id": "GDS4806", "description": "skeletal muscle", "sample_id": [ "GSM783307", "GSM783308", "GSM783309", "GSM783310", "GSM783311", "GSM783312", "GSM783313", "GSM783314", "GSM783315" ], "type": "tissue", "id": "GDS4806_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4806", "version": 1.0, "instances": "36", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4806.tab", "compression": "gz" } ], [ [ "GDS4807.tab" ], { "title": "IL-17C effect on keratinocytes: time course", "description": "Analysis of keratinocytes treated with Interleukin 17C (IL-17C) for 3 and 24 hours. IL-17C is induced in epithelia by bacterial challenge and inflammatory stimuli and upregulated in psoriatic skin lesions. Results provide insight into the role of IL-17C in the innate epithelial immune response.", "type": "Expression profiling by array", "pubmed_id": "21993848", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "16", "value_type": "log2 ratio", "reference_series": "GSE32620", "order": "none", "update_date": "Mar 21 2014", "subsets": [ { "dataset_id": "GDS4807", "description": "control", "sample_id": [ "GSM808634", "GSM808637", "GSM808642", "GSM808643", "GSM808645", "GSM808646" ], "type": "agent", "id": "GDS4807_1" }, { "dataset_id": "GDS4807", "description": "IL-17C", "sample_id": [ "GSM808633", "GSM808635", "GSM808636", "GSM808638", "GSM808639", "GSM808640", "GSM808641", "GSM808644", "GSM808647", "GSM808648" ], "type": "agent", "id": "GDS4807_2" }, { "dataset_id": "GDS4807", "description": "3 h", "sample_id": [ "GSM808633", "GSM808637", "GSM808638", "GSM808640", "GSM808641", "GSM808642", "GSM808643", "GSM808644" ], "type": "time", "id": "GDS4807_3" }, { "dataset_id": "GDS4807", "description": "24 h", "sample_id": [ "GSM808634", "GSM808635", "GSM808636", "GSM808639", "GSM808645", "GSM808646", "GSM808647", "GSM808648" ], "type": "time", "id": "GDS4807_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS4807", "version": 1.0, "instances": "16", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4807.tab", "compression": "gz" } ], [ [ "GDS4808.tab" ], { "title": "Glioblastoma cells response to Focal Adhesion Kinase Inhibitor Y15 and Temozolomide", "description": "Analysis of DBTRG glioblastoma cells treated with FAK inhibitor Y15, and U87 glioblastoma cells treated with Y15 and chemotherapy drug temozolomide. Results provide insight into molecular mechanisms underlying the synergistic inhibitory effect of Y15 and temozolomide on glioblastoma growth.", "type": "Expression profiling by array", "pubmed_id": "23387973", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE43452", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4808", "description": "DBTRG", "sample_id": [ "GSM1062686", "GSM1062687", "GSM1062688", "GSM1062689" ], "type": "cell line", "id": "GDS4808_1" }, { "dataset_id": "GDS4808", "description": "U87", "sample_id": [ "GSM1062690", "GSM1062691", "GSM1062692", "GSM1062693", "GSM1062694", "GSM1062695", "GSM1062696", "GSM1062697" ], "type": "cell line", "id": "GDS4808_2" }, { "dataset_id": "GDS4808", "description": "none", "sample_id": [ "GSM1062686", "GSM1062687", "GSM1062690", "GSM1062691" ], "type": "agent", "id": "GDS4808_3" }, { "dataset_id": "GDS4808", "description": "Y15", "sample_id": [ "GSM1062688", "GSM1062689", "GSM1062694", "GSM1062695" ], "type": "agent", "id": "GDS4808_4" }, { "dataset_id": "GDS4808", "description": "Temozolomide", "sample_id": [ "GSM1062692", "GSM1062693" ], "type": "agent", "id": "GDS4808_5" }, { "dataset_id": "GDS4808", "description": "Y15 and Temozolomide", "sample_id": [ "GSM1062696", "GSM1062697" ], "type": "agent", "id": "GDS4808_6" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4808", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4808.tab", "compression": "gz" } ], [ [ "GDS4809.tab" ], { "title": "Gata5 deficiency effect on the lung", "description": "Analysis of lungs of C57BL/6J animals deficient for Gata5, a transcription factor expressed in the lung. Gata5 deficiency causes airway constrictor hyperresponsiveness (AHR). Results provide insight into the molecular mechanisms by which Gata5 deficiency leads to AHR.", "type": "Expression profiling by array", "pubmed_id": "24199649", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE47425", "order": "none", "update_date": "Apr 08 2014", "subsets": [ { "dataset_id": "GDS4809", "description": "Gata5 null", "sample_id": [ "GSM1149295", "GSM1149296", "GSM1149297" ], "type": "genotype/variation", "id": "GDS4809_1" }, { "dataset_id": "GDS4809", "description": "wild type", "sample_id": [ "GSM1149298", "GSM1149299", "GSM1149300", "GSM1149301" ], "type": "genotype/variation", "id": "GDS4809_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4809", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4809.tab", "compression": "gz" } ], [ [ "GDS481.tab" ], { "title": "Indole-3-acetic acid time course", "description": "Temporal analysis of effect of auxin indole-3-acetic acid (IAA) on Columbia-0 seedlings. 20, 40 and 60 minute time points examined.", "type": "Expression profiling by array", "pubmed_id": "14648238", "platform": "GPL483", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21939", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE664", "order": "ordered", "update_date": "Nov 28 2003", "subsets": [ { "dataset_id": "GDS481", "description": "20 minute", "sample_id": [ "GSM9967" ], "type": "time", "id": "GDS481_1" }, { "dataset_id": "GDS481", "description": "40 minute", "sample_id": [ "GSM9968" ], "type": "time", "id": "GDS481_2" }, { "dataset_id": "GDS481", "description": "60 minute", "sample_id": [ "GSM9969" ], "type": "time", "id": "GDS481_3" } ], "taxid": "3702", "genes": 20214, "aggregation_function": "mean", "name": "GDS481", "version": 1.0, "instances": "3", "variables": 20216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS481.tab", "compression": "gz" } ], [ [ "GDS4810.tab" ], { "title": "H6 family homoebox 1 deficiency effect on the retina", "description": "Analysis of retinas of C57BL/6J animals deficient for H6 family homeobox 1 (HMX1). Loss of Hmx1 function in humans results in an oculoauricular defect leading to eye and auricular developmental abnormalities as well as early retinal degeneration. Results provide insight into role of Hmx1 in retina.", "type": "Expression profiling by array", "pubmed_id": "23946633", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE47002", "order": "none", "update_date": "Apr 08 2014", "subsets": [ { "dataset_id": "GDS4810", "description": "Hmx1 null", "sample_id": [ "GSM1142793", "GSM1142794", "GSM1142795", "GSM1142796" ], "type": "genotype/variation", "id": "GDS4810_1" }, { "dataset_id": "GDS4810", "description": "wild type", "sample_id": [ "GSM1142797", "GSM1142798", "GSM1142799", "GSM1142800" ], "type": "genotype/variation", "id": "GDS4810_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4810", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4810.tab", "compression": "gz" } ], [ [ "GDS4811.tab" ], { "title": "GPR120-deficient white adipose tissue response to a high fat diet", "description": "Analysis of white adipose tissues (WAT) of GPR120 null mutants fed a high fat diet (HFD). GPR120-deficient animals on a HFD develop obesity, glucose intolerance and fatty liver. Results provide insight into the molecular basis of the metabolic changes in WAT of GPR120-deficient mice.", "type": "Expression profiling by array", "pubmed_id": "22343897", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE32095", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4811", "description": "white adipose tissue", "sample_id": [ "GSM795602", "GSM795604", "GSM795606", "GSM795608", "GSM795610", "GSM795612", "GSM795615", "GSM795617", "GSM795619", "GSM795621", "GSM795623", "GSM795625" ], "type": "tissue", "id": "GDS4811_1" }, { "dataset_id": "GDS4811", "description": "wild type", "sample_id": [ "GSM795608", "GSM795610", "GSM795612", "GSM795625", "GSM795615", "GSM795617" ], "type": "genotype/variation", "id": "GDS4811_2" }, { "dataset_id": "GDS4811", "description": "GPR120 null", "sample_id": [ "GSM795602", "GSM795604", "GSM795606", "GSM795619", "GSM795621", "GSM795623" ], "type": "genotype/variation", "id": "GDS4811_3" }, { "dataset_id": "GDS4811", "description": "normal diet", "sample_id": [ "GSM795619", "GSM795621", "GSM795623", "GSM795625", "GSM795615", "GSM795617" ], "type": "protocol", "id": "GDS4811_4" }, { "dataset_id": "GDS4811", "description": "high fat diet", "sample_id": [ "GSM795602", "GSM795604", "GSM795606", "GSM795608", "GSM795610", "GSM795612" ], "type": "protocol", "id": "GDS4811_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4811", "version": 1.0, "instances": "12", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4811.tab", "compression": "gz" } ], [ [ "GDS4812.tab" ], { "title": "High phosphate diet effect on the kidney", "description": "Analysis of kidneys from male Wistar animals fed a high phosphorous diet. An HP diet causes renal calcification and hypertrophy. Results provide insight into the molecular mechanisms regulating phosphate homeostasis.", "type": "Expression profiling by array", "pubmed_id": "22235299", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE31973", "order": "none", "update_date": "Apr 08 2014", "subsets": [ { "dataset_id": "GDS4812", "description": "control diet", "sample_id": [ "GSM791837", "GSM791838", "GSM791839", "GSM791840" ], "type": "protocol", "id": "GDS4812_1" }, { "dataset_id": "GDS4812", "description": "high phosphate diet", "sample_id": [ "GSM791841", "GSM791842", "GSM791843", "GSM791844" ], "type": "protocol", "id": "GDS4812_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4812", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4812.tab", "compression": "gz" } ], [ [ "GDS4813.tab" ], { "title": "Melanoma cell line response to the depletion of various transcription factors and signaling proteins", "description": "Analysis of cultured A375 melanoma cells depleted for various transcription factors and signaling proteins. Results provide insight into the molecular pathogenesis of melanoma.", "type": "Expression profiling by array", "pubmed_id": "22536322", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "count", "reference_series": "GSE31534", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4813", "description": "ABL1 siRNA", "sample_id": [ "GSM782696" ], "type": "agent", "id": "GDS4813_1" }, { "dataset_id": "GDS4813", "description": "AKT1 siRNA", "sample_id": [ "GSM782697" ], "type": "agent", "id": "GDS4813_2" }, { "dataset_id": "GDS4813", "description": "CCNA2 siRNA", "sample_id": [ "GSM782698" ], "type": "agent", "id": "GDS4813_3" }, { "dataset_id": "GDS4813", "description": "CCNB1 siRNA", "sample_id": [ "GSM782699" ], "type": "agent", "id": "GDS4813_4" }, { "dataset_id": "GDS4813", "description": "CCNB2 siRNA", "sample_id": [ "GSM782700" ], "type": "agent", "id": "GDS4813_5" }, { "dataset_id": "GDS4813", "description": "CCND3 siRNA", "sample_id": [ "GSM782701" ], "type": "agent", "id": "GDS4813_6" }, { "dataset_id": "GDS4813", "description": "CDC16 siRNA", "sample_id": [ "GSM782702" ], "type": "agent", "id": "GDS4813_7" }, { "dataset_id": "GDS4813", "description": "CDC2 siRNA", "sample_id": [ "GSM782703" ], "type": "agent", "id": "GDS4813_8" }, { "dataset_id": "GDS4813", "description": "CDC25B siRNA", "sample_id": [ "GSM782704" ], "type": "agent", "id": "GDS4813_9" }, { "dataset_id": "GDS4813", "description": "CDC37 siRNA", "sample_id": [ "GSM782705" ], "type": "agent", "id": "GDS4813_10" }, { "dataset_id": "GDS4813", "description": "CDK2 siRNA", "sample_id": [ "GSM782706" ], "type": "agent", "id": "GDS4813_11" }, { "dataset_id": "GDS4813", "description": "CDK4 siRNA", "sample_id": [ "GSM782707" ], "type": "agent", "id": "GDS4813_12" }, { "dataset_id": "GDS4813", "description": "CDK7 siRNA", "sample_id": [ "GSM782708" ], "type": "agent", "id": "GDS4813_13" }, { "dataset_id": "GDS4813", "description": "CDKN2C siRNA", "sample_id": [ "GSM782709" ], "type": "agent", "id": "GDS4813_14" }, { "dataset_id": "GDS4813", "description": "CEBPD siRNA", "sample_id": [ "GSM782710" ], "type": "agent", "id": "GDS4813_15" }, { "dataset_id": "GDS4813", "description": "CEBPZ siRNA", "sample_id": [ "GSM782711" ], "type": "agent", "id": "GDS4813_16" }, { "dataset_id": "GDS4813", "description": "CHEK1 siRNA", "sample_id": [ "GSM782712" ], "type": "agent", "id": "GDS4813_17" }, { "dataset_id": "GDS4813", "description": "CTNNB1 siRNA", "sample_id": [ "GSM782713" ], "type": "agent", "id": "GDS4813_18" }, { "dataset_id": "GDS4813", "description": "ETS1 siRNA", "sample_id": [ "GSM782714" ], "type": "agent", "id": "GDS4813_19" }, { "dataset_id": "GDS4813", "description": "FOXM1 siRNA", "sample_id": [ "GSM782715" ], "type": "agent", "id": "GDS4813_20" }, { "dataset_id": "GDS4813", "description": "FOXO3A siRNA", "sample_id": [ "GSM782716" ], "type": "agent", "id": "GDS4813_21" }, { "dataset_id": "GDS4813", "description": "GABARAP siRNA", "sample_id": [ "GSM782717" ], "type": "agent", "id": "GDS4813_22" }, { "dataset_id": "GDS4813", "description": "HDAC2 siRNA", "sample_id": [ "GSM782718" ], "type": "agent", "id": "GDS4813_23" }, { "dataset_id": "GDS4813", "description": "HDAC3 siRNA", "sample_id": [ "GSM782719" ], "type": "agent", "id": "GDS4813_24" }, { "dataset_id": "GDS4813", "description": "HSF2 siRNA", "sample_id": [ "GSM782720" ], "type": "agent", "id": "GDS4813_25" }, { "dataset_id": "GDS4813", "description": "MAP2K1 siRNA", "sample_id": [ "GSM782721" ], "type": "agent", "id": "GDS4813_26" }, { "dataset_id": "GDS4813", "description": "MAPK1 siRNA", "sample_id": [ "GSM782722" ], "type": "agent", "id": "GDS4813_27" }, { "dataset_id": "GDS4813", "description": "MCM2 siRNA", "sample_id": [ "GSM782723" ], "type": "agent", "id": "GDS4813_28" }, { "dataset_id": "GDS4813", "description": "MITF siRNA", "sample_id": [ "GSM782724" ], "type": "agent", "id": "GDS4813_29" }, { "dataset_id": "GDS4813", "description": "NCOR2 siRNA", "sample_id": [ "GSM782725" ], "type": "agent", "id": "GDS4813_30" }, { "dataset_id": "GDS4813", "description": "NMI siRNA", "sample_id": [ "GSM782726" ], "type": "agent", "id": "GDS4813_31" }, { "dataset_id": "GDS4813", "description": "PCNA siRNA", "sample_id": [ "GSM782727" ], "type": "agent", "id": "GDS4813_32" }, { "dataset_id": "GDS4813", "description": "PIAS1 siRNA", "sample_id": [ "GSM782728" ], "type": "agent", "id": "GDS4813_33" }, { "dataset_id": "GDS4813", "description": "PIK3CB siRNA", "sample_id": [ "GSM782729" ], "type": "agent", "id": "GDS4813_34" }, { "dataset_id": "GDS4813", "description": "RB1 siRNA", "sample_id": [ "GSM782730" ], "type": "agent", "id": "GDS4813_35" }, { "dataset_id": "GDS4813", "description": "RBL2 siRNA", "sample_id": [ "GSM782731" ], "type": "agent", "id": "GDS4813_36" }, { "dataset_id": "GDS4813", "description": "RELA siRNA", "sample_id": [ "GSM782732" ], "type": "agent", "id": "GDS4813_37" }, { "dataset_id": "GDS4813", "description": "CONTROL siRNA", "sample_id": [ "GSM782733", "GSM782734", "GSM782735" ], "type": "agent", "id": "GDS4813_38" }, { "dataset_id": "GDS4813", "description": "SKP2 siRNA", "sample_id": [ "GSM782736" ], "type": "agent", "id": "GDS4813_39" }, { "dataset_id": "GDS4813", "description": "SP1 siRNA", "sample_id": [ "GSM782737" ], "type": "agent", "id": "GDS4813_40" }, { "dataset_id": "GDS4813", "description": "SP100 siRNA", "sample_id": [ "GSM782738" ], "type": "agent", "id": "GDS4813_41" }, { "dataset_id": "GDS4813", "description": "STAT1 siRNA", "sample_id": [ "GSM782739" ], "type": "agent", "id": "GDS4813_42" }, { "dataset_id": "GDS4813", "description": "STAT3 siRNA", "sample_id": [ "GSM782740" ], "type": "agent", "id": "GDS4813_43" }, { "dataset_id": "GDS4813", "description": "STAT6 siRNA", "sample_id": [ "GSM782741" ], "type": "agent", "id": "GDS4813_44" }, { "dataset_id": "GDS4813", "description": "TCEA1 siRNA", "sample_id": [ "GSM782742" ], "type": "agent", "id": "GDS4813_45" }, { "dataset_id": "GDS4813", "description": "TP53 siRNA", "sample_id": [ "GSM782743" ], "type": "agent", "id": "GDS4813_46" }, { "dataset_id": "GDS4813", "description": "NONE", "sample_id": [ "GSM782744", "GSM782745", "GSM782746" ], "type": "agent", "id": "GDS4813_47" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4813", "version": 1.0, "instances": "51", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4813.tab", "compression": "gz" } ], [ [ "GDS4814.tab" ], { "title": "Ovarian cancer xenograft tumor response to trastuzumab and pertuzumab", "description": "Analysis of SKOV3 ovarian cancer xenograft tumors treated with trastuzumab (TZ), pertuzumab (PZ), or both. TZ and PZ target Human Epidermal Growth Factor Receptor 2 (HER2). Combined therapy results in enhanced antitumor activity. Results provide insight into the molecular basis of this enhancement.", "type": "Expression profiling by array", "pubmed_id": "22549178", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE31432", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4814", "description": "none", "sample_id": [ "GSM780707", "GSM780708", "GSM780709", "GSM780719", "GSM780720", "GSM780721" ], "type": "agent", "id": "GDS4814_1" }, { "dataset_id": "GDS4814", "description": "trastuzumab", "sample_id": [ "GSM780710", "GSM780711", "GSM780712", "GSM780722", "GSM780723", "GSM780724" ], "type": "agent", "id": "GDS4814_2" }, { "dataset_id": "GDS4814", "description": "pertuzumab", "sample_id": [ "GSM780713", "GSM780714", "GSM780715", "GSM780725", "GSM780726", "GSM780727" ], "type": "agent", "id": "GDS4814_3" }, { "dataset_id": "GDS4814", "description": "trastuzumab and pertuzumab", "sample_id": [ "GSM780716", "GSM780717", "GSM780718", "GSM780728", "GSM780729" ], "type": "agent", "id": "GDS4814_4" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS4814", "version": 1.0, "instances": "23", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4814.tab", "compression": "gz" } ], [ [ "GDS4815.tab" ], { "title": "Escherichia coli response to the arylamide compound PMX 10070: time course", "description": "Analysis of Escherichia coli cells treated with a sublethal concentration of the antimicrobial arylamide compound PMX 10070 for 20 and 60 minutes. Arylamides permeabilize E. coli membranes. Results provide insight into molecular mechanisms underlying the antibacterial action of arylamides.", "type": "Expression profiling by array", "pubmed_id": "21844313", "platform": "GPL3154", "platform_organism": "Escherichia coli", "platform_technology_type": "in situ oligonucleotide", "feature_count": "10208", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE31140", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4815", "description": "none", "sample_id": [ "GSM770862", "GSM770863", "GSM770864", "GSM770871", "GSM770872", "GSM770873" ], "type": "agent", "id": "GDS4815_1" }, { "dataset_id": "GDS4815", "description": "PMX 10070", "sample_id": [ "GSM770865", "GSM770866", "GSM770867", "GSM770874", "GSM770875", "GSM770876" ], "type": "agent", "id": "GDS4815_2" }, { "dataset_id": "GDS4815", "description": "Polymyxin B", "sample_id": [ "GSM770868", "GSM770869", "GSM770870", "GSM770877", "GSM770878", "GSM770879" ], "type": "agent", "id": "GDS4815_3" }, { "dataset_id": "GDS4815", "description": "20 min", "sample_id": [ "GSM770862", "GSM770863", "GSM770864", "GSM770865", "GSM770866", "GSM770867", "GSM770868", "GSM770869", "GSM770870" ], "type": "time", "id": "GDS4815_4" }, { "dataset_id": "GDS4815", "description": "60 min", "sample_id": [ "GSM770871", "GSM770872", "GSM770873", "GSM770874", "GSM770875", "GSM770876", "GSM770877", "GSM770878", "GSM770879" ], "type": "time", "id": "GDS4815_5" } ], "taxid": "562", "genes": 8803, "aggregation_function": "mean", "name": "GDS4815", "version": 1.0, "instances": "18", "variables": 8806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4815.tab", "compression": "gz" } ], [ [ "GDS4816.tab" ], { "title": "Bmi1 deficiency effect on lung cells", "description": "Analysis of primary lung cells FACS-isolated from Bmi1 deficient mutants. BMI1, a member of the Polycomb Repressive Complex 1, is required for the self-renewal of adult stem cells. Results provide insight into the mechanisms underlying the BMI1-dependent regulation of lung stem cell self-renewal.", "type": "Expression profiling by array", "pubmed_id": "21885022", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE30852", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4816", "description": "wild type", "sample_id": [ "GSM765491", "GSM765492", "GSM765493" ], "type": "genotype/variation", "id": "GDS4816_1" }, { "dataset_id": "GDS4816", "description": "Bmi1 null", "sample_id": [ "GSM765494", "GSM765495", "GSM765496" ], "type": "genotype/variation", "id": "GDS4816_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4816", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4816.tab", "compression": "gz" } ], [ [ "GDS4817.tab" ], { "title": "SIRT3 deficient liver response to a high fat diet", "description": "Analysis of livers of mitochondrial protein deacetylase SIRT3 null mutants on a high fat diet (HFD). SIRT3 null mutants on a HFD exhibit obesity, insulin resistance, hyperlipidemia, and steatohepatitis. Results provide insight into molecular basis of metabolic dysfunction in SIRT3-deficient livers.", "type": "Expression profiling by array", "pubmed_id": "21856199", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE30552", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4817", "description": "control diet", "sample_id": [ "GSM758179", "GSM758180", "GSM758181", "GSM758182", "GSM758183", "GSM758184" ], "type": "protocol", "id": "GDS4817_1" }, { "dataset_id": "GDS4817", "description": "high fat diet", "sample_id": [ "GSM758185", "GSM758186", "GSM758187", "GSM758188", "GSM758189", "GSM758190" ], "type": "protocol", "id": "GDS4817_2" }, { "dataset_id": "GDS4817", "description": "wild type", "sample_id": [ "GSM758181", "GSM758180", "GSM758179", "GSM758187", "GSM758186", "GSM758185" ], "type": "genotype/variation", "id": "GDS4817_3" }, { "dataset_id": "GDS4817", "description": "SIRT3 null", "sample_id": [ "GSM758184", "GSM758183", "GSM758182", "GSM758190", "GSM758189", "GSM758188" ], "type": "genotype/variation", "id": "GDS4817_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4817", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4817.tab", "compression": "gz" } ], [ [ "GDS4818.tab" ], { "title": "Inflammatory breast cancer cell line response to TIG1 depletion", "description": "Analysis of SUM149 inflammatory breast cancer (IBC) cells depleted for TIG1. TIG1 depletion decreased IBC cell proliferation, migration, and invasion in vitro and inhibited tumor growth of IBC cells in vivo. Results provide insight into the role of TIG1 in the pathogenesis and progression of IBC.", "type": "Expression profiling by array", "pubmed_id": "24014597", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE30543", "order": "none", "update_date": "Apr 11 2014", "subsets": [ { "dataset_id": "GDS4818", "description": "TIG1 depletion", "sample_id": [ "GSM757758", "GSM757759", "GSM757760" ], "type": "genotype/variation", "id": "GDS4818_1" }, { "dataset_id": "GDS4818", "description": "control", "sample_id": [ "GSM757755", "GSM757756", "GSM757757" ], "type": "genotype/variation", "id": "GDS4818_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4818", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4818.tab", "compression": "gz" } ], [ [ "GDS4819.tab" ], { "title": "Inhibitor of NEDD8-activating enzyme MLN4924 effect on melanoma cell line", "description": "Analysis of A375 melanoma cells treated with small molecule MLN4924 for up to 24 hrs. MLN4924 selectively inhibits Nedd8-activating enzyme resulting in inactivation of the entire family of Cullin-RING ubiquitin ligases. Results provide insight into the molecular basis of MLN4924-induced cell death.", "type": "Expression profiling by array", "pubmed_id": "21873567", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE30531", "order": "none", "update_date": "Apr 11 2014", "subsets": [ { "dataset_id": "GDS4819", "description": "DMSO", "sample_id": [ "GSM757113", "GSM757114", "GSM757115", "GSM757116", "GSM757117", "GSM757118", "GSM757119", "GSM757120", "GSM757121", "GSM757122", "GSM757123", "GSM757124", "GSM757125", "GSM757126", "GSM757127" ], "type": "agent", "id": "GDS4819_1" }, { "dataset_id": "GDS4819", "description": "MLN4924", "sample_id": [ "GSM757128", "GSM757129", "GSM757130", "GSM757131", "GSM757132", "GSM757133", "GSM757134", "GSM757135", "GSM757136", "GSM757137", "GSM757138", "GSM757139", "GSM757140", "GSM757141", "GSM757142" ], "type": "agent", "id": "GDS4819_2" }, { "dataset_id": "GDS4819", "description": "1 h", "sample_id": [ "GSM757113", "GSM757114", "GSM757115", "GSM757128", "GSM757129", "GSM757130" ], "type": "time", "id": "GDS4819_3" }, { "dataset_id": "GDS4819", "description": "2 h", "sample_id": [ "GSM757116", "GSM757117", "GSM757118", "GSM757131", "GSM757132", "GSM757133" ], "type": "time", "id": "GDS4819_4" }, { "dataset_id": "GDS4819", "description": "4 h", "sample_id": [ "GSM757119", "GSM757120", "GSM757121", "GSM757134", "GSM757135", "GSM757136" ], "type": "time", "id": "GDS4819_5" }, { "dataset_id": "GDS4819", "description": "8 h", "sample_id": [ "GSM757122", "GSM757123", "GSM757124", "GSM757137", "GSM757138", "GSM757139" ], "type": "time", "id": "GDS4819_6" }, { "dataset_id": "GDS4819", "description": "24 h", "sample_id": [ "GSM757125", "GSM757126", "GSM757127", "GSM757140", "GSM757141", "GSM757142" ], "type": "time", "id": "GDS4819_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4819", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4819.tab", "compression": "gz" } ], [ [ "GDS4820.tab" ], { "title": "Skeletal muscle initial response to concentric resistance exercise training: time course", "description": "Analysis of vastus lateralis biopsies taken at the outset (day 1, 2 and 4) of concentric resistance exercise (RE) training in RE naive individuals. Results provide insight into molecular mechanisms underlying the initial transient response of skeletal muscle to concentric RE.", "type": "Expression profiling by array", "pubmed_id": "24265280", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE45426", "order": "ordered", "update_date": "Apr 17 2014", "subsets": [ { "dataset_id": "GDS4820", "description": "day 1 (baseline)", "sample_id": [ "GSM1104082", "GSM1104083", "GSM1104092", "GSM1104099", "GSM1104105", "GSM1104111", "GSM1104115", "GSM1104124", "GSM1104088", "GSM1104096", "GSM1104102", "GSM1104108", "GSM1104113", "GSM1104117", "GSM1104119", "GSM1104121" ], "type": "time", "id": "GDS4820_1" }, { "dataset_id": "GDS4820", "description": "day 2", "sample_id": [ "GSM1104089", "GSM1104097", "GSM1104103", "GSM1104109", "GSM1104118", "GSM1104122", "GSM1104084", "GSM1104085", "GSM1104093", "GSM1104100", "GSM1104106", "GSM1104112", "GSM1104116", "GSM1104125" ], "type": "time", "id": "GDS4820_2" }, { "dataset_id": "GDS4820", "description": "day 4", "sample_id": [ "GSM1104090", "GSM1104091", "GSM1104098", "GSM1104104", "GSM1104110", "GSM1104114", "GSM1104120", "GSM1104123", "GSM1104086", "GSM1104087", "GSM1104094", "GSM1104095", "GSM1104101", "GSM1104107", "GSM1104126" ], "type": "time", "id": "GDS4820_3" }, { "dataset_id": "GDS4820", "description": "exercise", "sample_id": [ "GSM1104082", "GSM1104083", "GSM1104084", "GSM1104085", "GSM1104086", "GSM1104087", "GSM1104092", "GSM1104093", "GSM1104094", "GSM1104095", "GSM1104099", "GSM1104100", "GSM1104101", "GSM1104105", "GSM1104106", "GSM1104107", "GSM1104111", "GSM1104112", "GSM1104115", "GSM1104116", "GSM1104124", "GSM1104125", "GSM1104126" ], "type": "protocol", "id": "GDS4820_4" }, { "dataset_id": "GDS4820", "description": "control", "sample_id": [ "GSM1104088", "GSM1104089", "GSM1104090", "GSM1104091", "GSM1104096", "GSM1104097", "GSM1104098", "GSM1104102", "GSM1104103", "GSM1104104", "GSM1104108", "GSM1104109", "GSM1104110", "GSM1104113", "GSM1104114", "GSM1104117", "GSM1104118", "GSM1104119", "GSM1104120", "GSM1104121", "GSM1104122", "GSM1104123" ], "type": "protocol", "id": "GDS4820_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4820", "version": 1.0, "instances": "45", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4820.tab", "compression": "gz" } ], [ [ "GDS4821.tab" ], { "title": "Platelet-derived growth factor receptor alpha-driven pediatric glioblastoma model with p53 null background", "description": "Analysis of high-grade gliomas (HGG) driven by intracranial implantation of p53-null astrocytes expressing any of 6 different mutant forms of platelet derived growth factor receptor alpha (Pdgfr\u03b1) found in pediatric HGGs. Results provide insight into the role of PDGFR\u03b1 mutations in pediatric HGGs.", "type": "Expression profiling by array", "pubmed_id": "23970477", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE46190", "order": "none", "update_date": "Mar 31 2014", "subsets": [ { "dataset_id": "GDS4821", "description": "EGFRvIII;p53null", "sample_id": [ "GSM1125930", "GSM1125912", "GSM1125948", "GSM1125935", "GSM1125934", "GSM1125933", "GSM1125949", "GSM1125936" ], "type": "genotype/variation", "id": "GDS4821_1" }, { "dataset_id": "GDS4821", "description": "Pdgfra C450 ins;p53null", "sample_id": [ "GSM1125921", "GSM1125924", "GSM1125925", "GSM1125939", "GSM1125940" ], "type": "genotype/variation", "id": "GDS4821_2" }, { "dataset_id": "GDS4821", "description": "Pdgfra D842V;p53null", "sample_id": [ "GSM1125926", "GSM1125914", "GSM1125927", "GSM1125928", "GSM1125942" ], "type": "genotype/variation", "id": "GDS4821_3" }, { "dataset_id": "GDS4821", "description": "Pdgfra E7 del;p53null", "sample_id": [ "GSM1125938", "GSM1125946", "GSM1125947" ], "type": "genotype/variation", "id": "GDS4821_4" }, { "dataset_id": "GDS4821", "description": "Pdgfra E10 del;p53null", "sample_id": [ "GSM1125915", "GSM1125916", "GSM1125919", "GSM1125931", "GSM1125937" ], "type": "genotype/variation", "id": "GDS4821_5" }, { "dataset_id": "GDS4821", "description": "Pdgfra E10 del.v2;p53null", "sample_id": [ "GSM1125911", "GSM1125913", "GSM1125922", "GSM1125923", "GSM1125929", "GSM1125932", "GSM1125945", "GSM1125954", "GSM1125955" ], "type": "genotype/variation", "id": "GDS4821_6" }, { "dataset_id": "GDS4821", "description": "Pdgfra V544ins;p53null", "sample_id": [ "GSM1125917", "GSM1125918", "GSM1125920", "GSM1125941", "GSM1125943", "GSM1125944", "GSM1125951", "GSM1125952", "GSM1125953" ], "type": "genotype/variation", "id": "GDS4821_7" }, { "dataset_id": "GDS4821", "description": "Pdgfra WT;p53null", "sample_id": [ "GSM1125950" ], "type": "genotype/variation", "id": "GDS4821_8" }, { "dataset_id": "GDS4821", "description": "EGFRVIII-driven Glioblastoma model", "sample_id": [ "GSM1125912", "GSM1125930", "GSM1125933", "GSM1125934", "GSM1125935", "GSM1125936", "GSM1125948", "GSM1125949" ], "type": "disease state", "id": "GDS4821_9" }, { "dataset_id": "GDS4821", "description": "PDGFRa-driven Glioblastoma model", "sample_id": [ "GSM1125921", "GSM1125924", "GSM1125925", "GSM1125939", "GSM1125940", "GSM1125914", "GSM1125926", "GSM1125927", "GSM1125928", "GSM1125942", "GSM1125938", "GSM1125946", "GSM1125947", "GSM1125915", "GSM1125916", "GSM1125919", "GSM1125931", "GSM1125937", "GSM1125911", "GSM1125913", "GSM1125922", "GSM1125923", "GSM1125929", "GSM1125932", "GSM1125945", "GSM1125954", "GSM1125955", "GSM1125917", "GSM1125918", "GSM1125920", "GSM1125941", "GSM1125943", "GSM1125944", "GSM1125951", "GSM1125952", "GSM1125953", "GSM1125950" ], "type": "disease state", "id": "GDS4821_10" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS4821", "version": 1.0, "instances": "45", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4821.tab", "compression": "gz" } ], [ [ "GDS4822.tab" ], { "title": "Lung response to thoracic irradiation: dose response and time course", "description": "Analysis of total lung from C57Bl/Ncr females exposed to 0, 5, or 17.5 Gy at 2, 4, 8, 16, and 30 weeks after thoracic irradiation. The lungs show extensive fibrosis at 30 weeks after 17.5 Gy. Results provide insight into molecular mechanisms underlying radiation-induced pulmonary fibrosis (RIPF).", "type": "Expression profiling by array", "pubmed_id": "24052614", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE41789", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4822", "description": "week 2", "sample_id": [ "GSM1024320", "GSM1024321", "GSM1024322", "GSM1024323", "GSM1024324", "GSM1024325", "GSM1024326", "GSM1024327", "GSM1024328" ], "type": "time", "id": "GDS4822_1" }, { "dataset_id": "GDS4822", "description": "week 4", "sample_id": [ "GSM1024329", "GSM1024330", "GSM1024331", "GSM1024332", "GSM1024333", "GSM1024334", "GSM1024335", "GSM1024336", "GSM1024337" ], "type": "time", "id": "GDS4822_2" }, { "dataset_id": "GDS4822", "description": "week 8", "sample_id": [ "GSM1024338", "GSM1024339", "GSM1024340", "GSM1024341", "GSM1024342", "GSM1024343", "GSM1024344", "GSM1024345", "GSM1024346" ], "type": "time", "id": "GDS4822_3" }, { "dataset_id": "GDS4822", "description": "week 16", "sample_id": [ "GSM1024347", "GSM1024348", "GSM1024349", "GSM1024350", "GSM1024351", "GSM1024352", "GSM1024353", "GSM1024354", "GSM1024355" ], "type": "time", "id": "GDS4822_4" }, { "dataset_id": "GDS4822", "description": "week 30", "sample_id": [ "GSM1024356", "GSM1024357", "GSM1024358", "GSM1024359", "GSM1024360", "GSM1024361", "GSM1024362", "GSM1024363", "GSM1024364" ], "type": "time", "id": "GDS4822_5" }, { "dataset_id": "GDS4822", "description": "0 Gy control", "sample_id": [ "GSM1024320", "GSM1024321", "GSM1024322", "GSM1024329", "GSM1024330", "GSM1024331", "GSM1024338", "GSM1024339", "GSM1024340", "GSM1024347", "GSM1024348", "GSM1024349", "GSM1024356", "GSM1024357", "GSM1024358" ], "type": "dose", "id": "GDS4822_6" }, { "dataset_id": "GDS4822", "description": "5 Gy radiation", "sample_id": [ "GSM1024323", "GSM1024324", "GSM1024325", "GSM1024332", "GSM1024333", "GSM1024334", "GSM1024341", "GSM1024342", "GSM1024343", "GSM1024359", "GSM1024360", "GSM1024361", "GSM1024350", "GSM1024351", "GSM1024352" ], "type": "dose", "id": "GDS4822_7" }, { "dataset_id": "GDS4822", "description": "17.5 Gy radiation", "sample_id": [ "GSM1024326", "GSM1024327", "GSM1024328", "GSM1024335", "GSM1024336", "GSM1024337", "GSM1024344", "GSM1024345", "GSM1024346", "GSM1024353", "GSM1024354", "GSM1024355", "GSM1024362", "GSM1024363", "GSM1024364" ], "type": "dose", "id": "GDS4822_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4822", "version": 1.0, "instances": "45", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4822.tab", "compression": "gz" } ], [ [ "GDS4823.tab" ], { "title": "SIRT4 deficiency effect on the liver", "description": "Analysis of livers from sirtuin 4 (SIRT4)-null, 129SV males. Fatty acid oxidation rates are higher in SIRT4 knockout hepatocytes than in wildtype cells. Results provide insight into the role of SIRT4 in hepatic lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "24043310", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE56321", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4823", "description": "wild type", "sample_id": [ "GSM1359081", "GSM1359082", "GSM1359083", "GSM1359084", "GSM1359085", "GSM1359086" ], "type": "genotype/variation", "id": "GDS4823_1" }, { "dataset_id": "GDS4823", "description": "SIRT4 null", "sample_id": [ "GSM1359087", "GSM1359088", "GSM1359089", "GSM1359090", "GSM1359091", "GSM1359092" ], "type": "genotype/variation", "id": "GDS4823_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4823", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4823.tab", "compression": "gz" } ], [ [ "GDS4824.tab" ], { "title": "Prostate cancer", "description": "Analysis of malignant and benign prostate tissues. Results provide insight into a gene expression signature for prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "19737960", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE55945", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4824", "description": "prostate cancer", "sample_id": [ "GSM1348933", "GSM1348934", "GSM1348935", "GSM1348936", "GSM1348937", "GSM1348938", "GSM1348939", "GSM1348940", "GSM1348941", "GSM1348942", "GSM1348943", "GSM1348944", "GSM1348945" ], "type": "disease state", "id": "GDS4824_1" }, { "dataset_id": "GDS4824", "description": "normal", "sample_id": [ "GSM1348946", "GSM1348947", "GSM1348948", "GSM1348949", "GSM1348950", "GSM1348951", "GSM1348952", "GSM1348953" ], "type": "disease state", "id": "GDS4824_2" }, { "dataset_id": "GDS4824", "description": "control", "sample_id": [ "GSM1348946", "GSM1348947", "GSM1348948", "GSM1348949", "GSM1348950", "GSM1348951", "GSM1348952", "GSM1348953" ], "type": "genotype/variation", "id": "GDS4824_3" }, { "dataset_id": "GDS4824", "description": "TMPRSS2:ERG gene fusion positive", "sample_id": [ "GSM1348940", "GSM1348941", "GSM1348942", "GSM1348943", "GSM1348944", "GSM1348945" ], "type": "genotype/variation", "id": "GDS4824_4" }, { "dataset_id": "GDS4824", "description": "TMPRSS2:ERG gene fusion negative", "sample_id": [ "GSM1348933", "GSM1348934", "GSM1348935", "GSM1348936", "GSM1348937", "GSM1348938", "GSM1348939" ], "type": "genotype/variation", "id": "GDS4824_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4824", "version": 1.0, "instances": "21", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4824.tab", "compression": "gz" } ], [ [ "GDS4825.tab" ], { "title": "Monocyte response to influenza A infection ex vivo", "description": "Analysis of blood monocytes following influenza A (IAV) infection ex vivo. IVA infection of monocytes induces differentiation into dendritic cells (DCs).Results provide insight into the molecular mechanisms underlying monocyte-to-DC differentiation.", "type": "Expression profiling by array", "pubmed_id": "22310910", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35473", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4825", "description": "influenza A", "sample_id": [ "GSM869065", "GSM869067", "GSM869069" ], "type": "infection", "id": "GDS4825_1" }, { "dataset_id": "GDS4825", "description": "control", "sample_id": [ "GSM869064", "GSM869066", "GSM869068" ], "type": "infection", "id": "GDS4825_2" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS4825", "version": 1.0, "instances": "6", "variables": 39533, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4825.tab", "compression": "gz" } ], [ [ "GDS4826.tab" ], { "title": "ARID1A depletion effect on ovarian surface epithelial cell lines", "description": "Analysis of OSE4 and IOSE80pc ovarian surface epithelial cells depleted for ARID1A, which encodes large nuclear protein p270. ARID1A depletion enhances OSE4 and IOSE80pc proliferation. OSE4 cells become highly tumorigenic upon ARID1A depletion. Results suggest a tumor-suppressor role for ARID1A.", "type": "Expression profiling by array", "pubmed_id": "21900401", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE37684", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4826", "description": "OSE4", "sample_id": [ "GSM925597", "GSM925598" ], "type": "cell line", "id": "GDS4826_1" }, { "dataset_id": "GDS4826", "description": "IOSE80pc", "sample_id": [ "GSM925599", "GSM925600" ], "type": "cell line", "id": "GDS4826_2" }, { "dataset_id": "GDS4826", "description": "control", "sample_id": [ "GSM925597", "GSM925599" ], "type": "protocol", "id": "GDS4826_3" }, { "dataset_id": "GDS4826", "description": "ARID1A depletion", "sample_id": [ "GSM925598", "GSM925600" ], "type": "protocol", "id": "GDS4826_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4826", "version": 1.0, "instances": "4", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4826.tab", "compression": "gz" } ], [ [ "GDS4827.tab" ], { "title": "Tropomodulin3 deficiency effect on the fetal liver", "description": "Analysis of at E14.5 fetal livers of Tropomodulin3 (Tmod3) deficient mutants. Tmod3 deletion leads to embryonic lethality at E14.5-E18.5, with anemia due to defects in definitive erythropoiesis in the fetal liver. Results provide insight into the role of Tmod3 in erythroid differentiation.", "type": "Expression profiling by array", "pubmed_id": "24159174", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE51960", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4827", "description": "Tmod3 null", "sample_id": [ "GSM1255899", "GSM1255900", "GSM1255901" ], "type": "genotype/variation", "id": "GDS4827_1" }, { "dataset_id": "GDS4827", "description": "wild type", "sample_id": [ "GSM1255902", "GSM1255903", "GSM1255904" ], "type": "genotype/variation", "id": "GDS4827_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4827", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4827.tab", "compression": "gz" } ], [ [ "GDS4828.tab" ], { "title": "Cyclophilin B depletion effect on glioblastoma multiforme cell line", "description": "Analysis of U251 glioblastoma multiforme (GBM) cells depleted for cyclophilin B (CypB), a prolyl isomerase in the endoplasmic reticulum. CypB depletion reduces GBM cell survival. Results provide insight into the role of CypB in the survival of GBM cells.", "type": "Expression profiling by array", "pubmed_id": "24272483", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE50756", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4828", "description": "control", "sample_id": [ "GSM1228046", "GSM1228047", "GSM1228048" ], "type": "protocol", "id": "GDS4828_1" }, { "dataset_id": "GDS4828", "description": "CypB depletion", "sample_id": [ "GSM1228049", "GSM1228050", "GSM1228051" ], "type": "protocol", "id": "GDS4828_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4828", "version": 1.0, "instances": "6", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4828.tab", "compression": "gz" } ], [ [ "GDS4829.tab" ], { "title": "VprBP depletion effect on prostate cancer cell line", "description": "Analysis of DU145 prostate cancer cells depleted for Vpr binding protein (VPRBP). VPRBP knockdown decreases histone H2A threonine 120 (H2AT120) phosphorylation and impairs the viability of DU145 cells. Results provide insight into the role of VprBP in regulating gene transcription.", "type": "Expression profiling by array", "pubmed_id": "24140421", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE50414", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4829", "description": "control", "sample_id": [ "GSM1218852", "GSM1218854" ], "type": "genotype/variation", "id": "GDS4829_1" }, { "dataset_id": "GDS4829", "description": "VprBP depletion", "sample_id": [ "GSM1218853", "GSM1218855" ], "type": "genotype/variation", "id": "GDS4829_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4829", "version": 1.0, "instances": "4", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4829.tab", "compression": "gz" } ], [ [ "GDS4830.tab" ], { "title": "GPR120-deficient liver response to a high fat diet", "description": "Analysis of livers of GPR120 null mutants fed a high fat diet (HFD). GPR120-deficient animals on a HFD develop obesity, glucose intolerance and fatty liver. Results provide insight into the molecular basis of the metabolic changes in livers of GPR120-deficient mice.", "type": "Expression profiling by array", "pubmed_id": "22343897", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE32095", "order": "none", "update_date": "Apr 10 2014", "subsets": [ { "dataset_id": "GDS4830", "description": "liver", "sample_id": [ "GSM795603", "GSM795605", "GSM795607", "GSM795620", "GSM795622", "GSM795624", "GSM795609", "GSM795611", "GSM795613", "GSM795614", "GSM795616", "GSM795618" ], "type": "tissue", "id": "GDS4830_1" }, { "dataset_id": "GDS4830", "description": "wild type", "sample_id": [ "GSM795609", "GSM795611", "GSM795613", "GSM795614", "GSM795616", "GSM795618" ], "type": "genotype/variation", "id": "GDS4830_2" }, { "dataset_id": "GDS4830", "description": "GPR120 null", "sample_id": [ "GSM795603", "GSM795605", "GSM795607", "GSM795620", "GSM795622", "GSM795624" ], "type": "genotype/variation", "id": "GDS4830_3" }, { "dataset_id": "GDS4830", "description": "normal diet", "sample_id": [ "GSM795620", "GSM795622", "GSM795624", "GSM795614", "GSM795616", "GSM795618" ], "type": "protocol", "id": "GDS4830_4" }, { "dataset_id": "GDS4830", "description": "high fat diet", "sample_id": [ "GSM795603", "GSM795605", "GSM795607", "GSM795609", "GSM795611", "GSM795613" ], "type": "protocol", "id": "GDS4830_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4830", "version": 1.0, "instances": "12", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4830.tab", "compression": "gz" } ], [ [ "GDS4831.tab" ], { "title": "COP1 depletion effect on hepatocellular carcinoma cell lines", "description": "Analysis of Huh7, HepG2, and Hep3B hepatocellular carcinoma (HCC) cells depleted for the ubiquitin modulator COP1. COP1 regulates p53 activity by ubiquitination. p53 is wild type in HepG2, mutated in Huh7, and lacking in Hep3B. Results provide insight into the role of COP1 in HCC pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "20959491", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE21955", "order": "none", "update_date": "Apr 11 2014", "subsets": [ { "dataset_id": "GDS4831", "description": "COP1 depletion", "sample_id": [ "GSM545954", "GSM545955", "GSM545956", "GSM545960", "GSM545961", "GSM545962", "GSM545963", "GSM545968", "GSM545969", "GSM545970", "GSM545971" ], "type": "protocol", "id": "GDS4831_1" }, { "dataset_id": "GDS4831", "description": "negative control", "sample_id": [ "GSM545957", "GSM545958", "GSM545959", "GSM545964", "GSM545965", "GSM545966", "GSM545967", "GSM545972", "GSM545973", "GSM545974", "GSM545975" ], "type": "protocol", "id": "GDS4831_2" }, { "dataset_id": "GDS4831", "description": "Huh7", "sample_id": [ "GSM545954", "GSM545955", "GSM545956", "GSM545957", "GSM545958", "GSM545959" ], "type": "cell line", "id": "GDS4831_3" }, { "dataset_id": "GDS4831", "description": "HepG2", "sample_id": [ "GSM545960", "GSM545961", "GSM545962", "GSM545963", "GSM545964", "GSM545965", "GSM545966", "GSM545967" ], "type": "cell line", "id": "GDS4831_4" }, { "dataset_id": "GDS4831", "description": "Hep3B", "sample_id": [ "GSM545968", "GSM545969", "GSM545970", "GSM545971", "GSM545972", "GSM545973", "GSM545974", "GSM545975" ], "type": "cell line", "id": "GDS4831_5" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS4831", "version": 1.0, "instances": "22", "variables": 19338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4831.tab", "compression": "gz" } ], [ [ "GDS4832.tab" ], { "title": "Bronchial epithelial cell response to rhinovirus infection and cigarette smoke exposure", "description": "Analysis of cultured bronchial epithelial cells (BECs) after rhinovirus (RV) infection, cigarette smoke extract exposure, or both. The airway epithelial cell is the primary site of RV infection. Results provide insight into the impact of cigarette smoking on the response of BECs to RV infections.", "type": "Expression profiling by array", "pubmed_id": "22808255", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE27973", "order": "none", "update_date": "Apr 11 2014", "subsets": [ { "dataset_id": "GDS4832", "description": "donor 1", "sample_id": [ "GSM692115", "GSM692116", "GSM692117", "GSM692118" ], "type": "individual", "id": "GDS4832_1" }, { "dataset_id": "GDS4832", "description": "donor 2", "sample_id": [ "GSM692119", "GSM692120", "GSM692121", "GSM692122" ], "type": "individual", "id": "GDS4832_2" }, { "dataset_id": "GDS4832", "description": "donor 3", "sample_id": [ "GSM692123", "GSM692124", "GSM692125", "GSM692126" ], "type": "individual", "id": "GDS4832_3" }, { "dataset_id": "GDS4832", "description": "donor 4", "sample_id": [ "GSM692127", "GSM692128", "GSM692129", "GSM692130" ], "type": "individual", "id": "GDS4832_4" }, { "dataset_id": "GDS4832", "description": "control", "sample_id": [ "GSM692115", "GSM692119", "GSM692123", "GSM692127" ], "type": "agent", "id": "GDS4832_5" }, { "dataset_id": "GDS4832", "description": "rhinovirus", "sample_id": [ "GSM692116", "GSM692120", "GSM692124", "GSM692128" ], "type": "agent", "id": "GDS4832_6" }, { "dataset_id": "GDS4832", "description": "cigarette smoke extract", "sample_id": [ "GSM692117", "GSM692121", "GSM692125", "GSM692129" ], "type": "agent", "id": "GDS4832_7" }, { "dataset_id": "GDS4832", "description": "rhinovirus and cigarette smoke extract", "sample_id": [ "GSM692118", "GSM692122", "GSM692126", "GSM692130" ], "type": "agent", "id": "GDS4832_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4832", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4832.tab", "compression": "gz" } ], [ [ "GDS4833.tab" ], { "title": "Cediranib effect on metastatic alveolar soft part sarcoma", "description": "Analysis of metastatic alveolar soft part sarcoma (ASPS) biopsies from patients treated with cediranib, a small-molecule inhibitor of vascular endothelial growth factor receptors. Results provide insight into molecular mechanisms underlying the substantial single-agent activity of cediranib on ASPS.", "type": "Expression profiling by array", "pubmed_id": "23630200", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE32569", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4833", "description": "control", "sample_id": [ "GSM807204", "GSM807206", "GSM807208", "GSM807210", "GSM807212", "GSM807214" ], "type": "agent", "id": "GDS4833_1" }, { "dataset_id": "GDS4833", "description": "Cediranib", "sample_id": [ "GSM807203", "GSM807205", "GSM807207", "GSM807209", "GSM807211", "GSM807213" ], "type": "agent", "id": "GDS4833_2" }, { "dataset_id": "GDS4833", "description": "patient 38", "sample_id": [ "GSM807204", "GSM807203" ], "type": "individual", "id": "GDS4833_3" }, { "dataset_id": "GDS4833", "description": "patient 23", "sample_id": [ "GSM807206", "GSM807205" ], "type": "individual", "id": "GDS4833_4" }, { "dataset_id": "GDS4833", "description": "patient 24", "sample_id": [ "GSM807208", "GSM807207" ], "type": "individual", "id": "GDS4833_5" }, { "dataset_id": "GDS4833", "description": "patient 25", "sample_id": [ "GSM807210", "GSM807209" ], "type": "individual", "id": "GDS4833_6" }, { "dataset_id": "GDS4833", "description": "patient 32", "sample_id": [ "GSM807212", "GSM807211" ], "type": "individual", "id": "GDS4833_7" }, { "dataset_id": "GDS4833", "description": "patient 34", "sample_id": [ "GSM807214", "GSM807213" ], "type": "individual", "id": "GDS4833_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4833", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4833.tab", "compression": "gz" } ], [ [ "GDS4834.tab" ], { "title": "Colistin effect on the kidney", "description": "Analysis of kidneys from C57BL/6J males following treatment with colistin. Colistin is an antibiotic prescribed for multidrug resistant gram negative bacterial infections. It is associated with nephrotoxicity. Results provide insight into the molecular basis of colistin nephrotoxicity.", "type": "Expression profiling by array", "pubmed_id": "23922129", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE46410", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4834", "description": "saline", "sample_id": [ "GSM1129870", "GSM1129872", "GSM1129874", "GSM1129876", "GSM1129878", "GSM1129880" ], "type": "agent", "id": "GDS4834_1" }, { "dataset_id": "GDS4834", "description": "colistin", "sample_id": [ "GSM1129877", "GSM1129879", "GSM1129881", "GSM1129871", "GSM1129873", "GSM1129875" ], "type": "agent", "id": "GDS4834_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS4834", "version": 1.0, "instances": "12", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4834.tab", "compression": "gz" } ], [ [ "GDS4835.tab" ], { "title": "Transcription factor treatment effect on embryonic fibroblasts", "description": "Analysis of embryonic fibroblasts transduced with various transcription factor combinations (MEF2C, TBX5, NKX2.5, GATA4, Hand2, MYOCD) to drive transdifferentiation to induced cardiomyocytes (iCMs). Results provide insight into molecular mechanisms governing direct fibroblast reprogramming to iCMs.", "type": "Expression profiling by array", "pubmed_id": "23591016", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE45274", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4835", "description": "no transcription factors", "sample_id": [ "GSM1100519", "GSM1100520", "GSM1100521" ], "type": "protocol", "id": "GDS4835_1" }, { "dataset_id": "GDS4835", "description": "DMNT (MYOCD, NKX2.5, MEF2C, TBX5)", "sample_id": [ "GSM1100542", "GSM1100543", "GSM1100544", "GSM1100545" ], "type": "protocol", "id": "GDS4835_2" }, { "dataset_id": "GDS4835", "description": "DMT (MYOCD, MEF2C, TBX5)", "sample_id": [ "GSM1100527", "GSM1100528", "GSM1100529", "GSM1100541" ], "type": "protocol", "id": "GDS4835_3" }, { "dataset_id": "GDS4835", "description": "GMT (GATA4, MEF2C, TBX5)", "sample_id": [ "GSM1100522", "GSM1100523", "GSM1100530", "GSM1100531", "GSM1100532" ], "type": "protocol", "id": "GDS4835_4" }, { "dataset_id": "GDS4835", "description": "HGMT (Hand2, GATA4, MEF2C, TBX5)", "sample_id": [ "GSM1100536", "GSM1100537", "GSM1100538" ], "type": "protocol", "id": "GDS4835_5" }, { "dataset_id": "GDS4835", "description": "HNGMT (Hand2, NKX2.5, GATA4, MEF2C, TBX5)", "sample_id": [ "GSM1100539", "GSM1100540", "GSM1102649" ], "type": "protocol", "id": "GDS4835_6" }, { "dataset_id": "GDS4835", "description": "NGMT (NKX2.5, GATA4, MEF2C, TBX5)", "sample_id": [ "GSM1100524", "GSM1100525", "GSM1100526", "GSM1100533", "GSM1100534", "GSM1100535" ], "type": "protocol", "id": "GDS4835_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4835", "version": 1.0, "instances": "28", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4835.tab", "compression": "gz" } ], [ [ "GDS4836.tab" ], { "title": "Retinoic acid deficiency effect on embryonic brain", "description": "Analysis of anterior and posterior brain regions from Retinaldehyde Dehydrogenase 2 null-mutant (Raldh2-/-) embryos, which are unable to synthesize retinoic acid (RA) from maternally-derived retinol. Results provide insight into the repertoire of RA-regulated genes in the developing embryo.", "type": "Expression profiling by array", "pubmed_id": "23638021", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE43578", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4836", "description": "posterior embryonic brain", "sample_id": [ "GSM1065693", "GSM1065694", "GSM1065695", "GSM1065696", "GSM1065697", "GSM1065698", "GSM1065699", "GSM1065700", "GSM1065701" ], "type": "tissue", "id": "GDS4836_1" }, { "dataset_id": "GDS4836", "description": "anterior embryonic brain", "sample_id": [ "GSM1065702", "GSM1065703", "GSM1065704", "GSM1065705", "GSM1065706", "GSM1065707", "GSM1065708", "GSM1065709", "GSM1065710" ], "type": "tissue", "id": "GDS4836_2" }, { "dataset_id": "GDS4836", "description": "Raldh2-/-", "sample_id": [ "GSM1065705", "GSM1065706", "GSM1065707", "GSM1065708", "GSM1065709", "GSM1065710", "GSM1065693", "GSM1065694", "GSM1065695", "GSM1065696" ], "type": "genotype/variation", "id": "GDS4836_3" }, { "dataset_id": "GDS4836", "description": "wild type", "sample_id": [ "GSM1065702", "GSM1065703", "GSM1065704", "GSM1065697", "GSM1065698", "GSM1065699", "GSM1065700", "GSM1065701" ], "type": "genotype/variation", "id": "GDS4836_4" }, { "dataset_id": "GDS4836", "description": "4 somite stage", "sample_id": [ "GSM1065693", "GSM1065694", "GSM1065695", "GSM1065696", "GSM1065697", "GSM1065698", "GSM1065699", "GSM1065700", "GSM1065701" ], "type": "development stage", "id": "GDS4836_5" }, { "dataset_id": "GDS4836", "description": "14 somite stage", "sample_id": [ "GSM1065702", "GSM1065703", "GSM1065704", "GSM1065705", "GSM1065706", "GSM1065707", "GSM1065708", "GSM1065709", "GSM1065710" ], "type": "development stage", "id": "GDS4836_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4836", "version": 1.0, "instances": "18", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4836.tab", "compression": "gz" } ], [ [ "GDS4837.tab" ], { "title": "Never-medicated and medicated bipolar patients: peripheral blood leukocytes", "description": "Analysis of peripheral blood leukocytes from first-episode, never-medicated bipolar disorder (BPD) patients and medicated BPD patients. Results provide insight into a peripheral biomarker profile for BPD that is not induced by medication.", "type": "Expression profiling by array", "pubmed_id": "23826396", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "88", "value_type": "transformed count", "reference_series": "GSE46449", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4837", "description": "control", "sample_id": [ "GSM1130404", "GSM1130405", "GSM1130408", "GSM1130409", "GSM1130410", "GSM1130415", "GSM1130416", "GSM1130417", "GSM1130418", "GSM1130421", "GSM1130422", "GSM1130423", "GSM1130424", "GSM1130425", "GSM1130426", "GSM1130427", "GSM1130428", "GSM1130429", "GSM1130430", "GSM1130431", "GSM1130432", "GSM1130433", "GSM1130434", "GSM1130435", "GSM1130436", "GSM1130437", "GSM1130438", "GSM1130439", "GSM1130440", "GSM1130441", "GSM1130442", "GSM1130443", "GSM1130444", "GSM1130445", "GSM1130476", "GSM1130483", "GSM1130484", "GSM1130487", "GSM1130488" ], "type": "disease state", "id": "GDS4837_1" }, { "dataset_id": "GDS4837", "description": "bipolar, first-episode unmedicated", "sample_id": [ "GSM1130419", "GSM1130420", "GSM1130464", "GSM1130465", "GSM1130468", "GSM1130469" ], "type": "disease state", "id": "GDS4837_2" }, { "dataset_id": "GDS4837", "description": "biploar, medicated", "sample_id": [ "GSM1130402", "GSM1130403", "GSM1130406", "GSM1130407", "GSM1130411", "GSM1130412", "GSM1130413", "GSM1130414", "GSM1130446", "GSM1130447", "GSM1130448", "GSM1130449", "GSM1130450", "GSM1130451", "GSM1130452", "GSM1130453", "GSM1130454", "GSM1130455", "GSM1130456", "GSM1130457", "GSM1130458", "GSM1130459", "GSM1130460", "GSM1130461", "GSM1130462", "GSM1130463", "GSM1130466", "GSM1130467", "GSM1130470", "GSM1130471", "GSM1130472", "GSM1130473", "GSM1130474", "GSM1130475", "GSM1130477", "GSM1130478", "GSM1130479", "GSM1130480", "GSM1130481", "GSM1130482", "GSM1130485", "GSM1130486", "GSM1130489" ], "type": "disease state", "id": "GDS4837_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4837", "version": 1.0, "instances": "88", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4837.tab", "compression": "gz" } ], [ [ "GDS4838.tab" ], { "title": "Central nervous system primitive neuroectodermal tumors", "description": "Analysis of central nervous system primitive neuroectodermal tumors (CNS PNET). CNS PNETs are embryonal tumors that occur predominantly in children. Results provide insight into the molecular mechanisms underlying CNS PNET pathogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "23591193", "23887970" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE19404", "order": "none", "update_date": "Apr 23 2014", "subsets": [ { "dataset_id": "GDS4838", "description": "CNS primitive neuroectodermal tumors", "sample_id": [ "GSM482075", "GSM482076", "GSM482077", "GSM482078", "GSM482079", "GSM482080", "GSM482081", "GSM482082", "GSM482083", "GSM482084", "GSM482085", "GSM482086", "GSM482087" ], "type": "disease state", "id": "GDS4838_1" }, { "dataset_id": "GDS4838", "description": "Pineoblastoma", "sample_id": [ "GSM482088" ], "type": "disease state", "id": "GDS4838_2" }, { "dataset_id": "GDS4838", "description": "atypical teratoid/rhabdoid tumour (ATRT)", "sample_id": [ "GSM482089" ], "type": "disease state", "id": "GDS4838_3" }, { "dataset_id": "GDS4838", "description": "Medulloblastoma", "sample_id": [ "GSM482090", "GSM482091", "GSM482092", "GSM482093", "GSM482094", "GSM482095", "GSM482096", "GSM482097" ], "type": "disease state", "id": "GDS4838_4" }, { "dataset_id": "GDS4838", "description": "normal fetal brain", "sample_id": [ "GSM482098" ], "type": "disease state", "id": "GDS4838_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4838", "version": 1.0, "instances": "24", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4838.tab", "compression": "gz" } ], [ [ "GDS4839.tab" ], { "title": "Methylmalonic acidemia-associated renal disease model: kidney", "description": "Analysis of kidney from methylmalonyl-CoA mutase (Mut)-deficient females that express Mut in hepatocytes under the control of an albumin promoter. This animal model replicates methylmalonic acidemia (MMA) kidney disease. Results provide insight into molecular mechanisms underlying MMA renal disease.", "type": "Expression profiling by array", "pubmed_id": "23898205", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE41044", "order": "none", "update_date": "Apr 24 2014", "subsets": [ { "dataset_id": "GDS4839", "description": "MMA mutant", "sample_id": [ "GSM1007957", "GSM1007958", "GSM1007959", "GSM1007960" ], "type": "genotype/variation", "id": "GDS4839_1" }, { "dataset_id": "GDS4839", "description": "MMA heterozygote", "sample_id": [ "GSM1007961", "GSM1007962", "GSM1007963", "GSM1007964" ], "type": "genotype/variation", "id": "GDS4839_2" }, { "dataset_id": "GDS4839", "description": "MMA wild type", "sample_id": [ "GSM1007965", "GSM1007966", "GSM1007967", "GSM1007968" ], "type": "genotype/variation", "id": "GDS4839_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4839", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4839.tab", "compression": "gz" } ], [ [ "GDS484.tab" ], { "title": "Uterine fibroid and normal myometrial tissue", "description": "Comparison of normal myometrium and uterine leiomyomas obtained from fibroid afflicted patients.", "type": "Expression profiling by array", "pubmed_id": "15374708", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE593", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS484", "description": "leiomyoma", "sample_id": [ "GSM9093", "GSM9094", "GSM9095", "GSM9096", "GSM9097" ], "type": "disease state", "id": "GDS484_1" }, { "dataset_id": "GDS484", "description": "normal", "sample_id": [ "GSM9098", "GSM9099", "GSM9100", "GSM9101", "GSM9102" ], "type": "disease state", "id": "GDS484_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS484", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS484.tab", "compression": "gz" } ], [ [ "GDS4840.tab" ], { "title": "C-C Chemokine receptor 5 deficient lungs with melanoma metastasis: time course", "description": "Analysis of lungs from CCR5-deficient mutants 6 to 48 hrs after tail vein injection with B16-F10 melanoma cells. Lungs of CCR5-deficient mutants develop fewer metastatic nodules than in wild type animals. Results provide insight into the molecular mechanisms underlying CCR5-dependent metastasis.", "type": "Expression profiling by array", "pubmed_id": "24197118", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE51422", "order": "none", "update_date": "Apr 24 2014", "subsets": [ { "dataset_id": "GDS4840", "description": "6 h", "sample_id": [ "GSM1245191", "GSM1245196" ], "type": "time", "id": "GDS4840_1" }, { "dataset_id": "GDS4840", "description": "24 h", "sample_id": [ "GSM1245193", "GSM1245198" ], "type": "time", "id": "GDS4840_2" }, { "dataset_id": "GDS4840", "description": "48 h", "sample_id": [ "GSM1245194", "GSM1245200" ], "type": "time", "id": "GDS4840_3" }, { "dataset_id": "GDS4840", "description": "wild type", "sample_id": [ "GSM1245196", "GSM1245198", "GSM1245200" ], "type": "genotype/variation", "id": "GDS4840_4" }, { "dataset_id": "GDS4840", "description": "CCR5 null", "sample_id": [ "GSM1245191", "GSM1245193", "GSM1245194" ], "type": "genotype/variation", "id": "GDS4840_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4840", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4840.tab", "compression": "gz" } ], [ [ "GDS4841.tab" ], { "title": "Inflammatory myopathies", "description": "Analysis of pathological skeletal muscle fibers from patients with dermatomyositis (DM), polymyositis (PM), or inclusion body myositis (IBM). Results provide insight into the molecular mechanisms underlying the pathogenesis of DM, PM, and IBM.", "type": "Expression profiling by array", "pubmed_id": "24604766", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "transformed count", "reference_series": "GSE48280", "order": "none", "update_date": "Apr 24 2014", "subsets": [ { "dataset_id": "GDS4841", "description": "healthy", "sample_id": [ "GSM1174159", "GSM1174160", "GSM1174161", "GSM1174162", "GSM1174163" ], "type": "disease state", "id": "GDS4841_1" }, { "dataset_id": "GDS4841", "description": "dermatomyositis", "sample_id": [ "GSM1174164", "GSM1174165", "GSM1174166", "GSM1174167", "GSM1174168" ], "type": "disease state", "id": "GDS4841_2" }, { "dataset_id": "GDS4841", "description": "polymyositis", "sample_id": [ "GSM1174169", "GSM1174170", "GSM1174171", "GSM1174172", "GSM1174173" ], "type": "disease state", "id": "GDS4841_3" }, { "dataset_id": "GDS4841", "description": "inclusion body myositis", "sample_id": [ "GSM1174174", "GSM1174175", "GSM1174176", "GSM1174177" ], "type": "disease state", "id": "GDS4841_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4841", "version": 1.0, "instances": "19", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4841.tab", "compression": "gz" } ], [ [ "GDS4842.tab" ], { "title": "SARM-deficient brain response to vesicular stomatitis virus infection", "description": "Analysis of brains from SARM-deficient animals infected with the vesicular stomatitis virus (VSV). SARM is a member of the Toll/IL-1R domain-containing adaptor family. VSV is used to study the response to neurotropic viral infections. Results provide insight into the role of SARM in innate immunity.", "type": "Expression profiling by array", "pubmed_id": "23749635", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE44331", "order": "none", "update_date": "Apr 24 2014", "subsets": [ { "dataset_id": "GDS4842", "description": "wild type", "sample_id": [ "GSM1083367", "GSM1083368", "GSM1083369", "GSM1083361", "GSM1083362", "GSM1083363" ], "type": "genotype/variation", "id": "GDS4842_1" }, { "dataset_id": "GDS4842", "description": "SARM null", "sample_id": [ "GSM1083370", "GSM1083371", "GSM1083372", "GSM1083364", "GSM1083365", "GSM1083366" ], "type": "genotype/variation", "id": "GDS4842_2" }, { "dataset_id": "GDS4842", "description": "uninfected", "sample_id": [ "GSM1083366", "GSM1083365", "GSM1083364", "GSM1083363", "GSM1083362", "GSM1083361" ], "type": "infection", "id": "GDS4842_3" }, { "dataset_id": "GDS4842", "description": "VSV", "sample_id": [ "GSM1083372", "GSM1083371", "GSM1083370", "GSM1083369", "GSM1083368", "GSM1083367" ], "type": "infection", "id": "GDS4842_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4842", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4842.tab", "compression": "gz" } ], [ [ "GDS4843.tab" ], { "title": "Tibial muscular dystrophy", "description": "Analysis of muscles of tibial muscular dystrophy (TMD) patients. TMD is a late onset, autosomal dominant distal myopathy of the anterior lower leg that results from titin mutations. Results provide insight into the molecular events leading from the causative mutations to the death of muscle cells.", "type": "Expression profiling by array", "pubmed_id": "24618559", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE42806", "order": "none", "update_date": "Apr 18 2014", "subsets": [ { "dataset_id": "GDS4843", "description": "control", "sample_id": [ "GSM1050270", "GSM1050271", "GSM1050272", "GSM1050273", "GSM1050274" ], "type": "disease state", "id": "GDS4843_1" }, { "dataset_id": "GDS4843", "description": "tibial muscular dystrophy", "sample_id": [ "GSM1050260", "GSM1050261", "GSM1050262", "GSM1050263", "GSM1050264", "GSM1050265", "GSM1050266" ], "type": "disease state", "id": "GDS4843_2" }, { "dataset_id": "GDS4843", "description": "extensor digitorum longus", "sample_id": [ "GSM1050260", "GSM1050263", "GSM1050271", "GSM1050273" ], "type": "tissue", "id": "GDS4843_3" }, { "dataset_id": "GDS4843", "description": "gastrocnemius medialis", "sample_id": [ "GSM1050261" ], "type": "tissue", "id": "GDS4843_4" }, { "dataset_id": "GDS4843", "description": "tibialis posterior", "sample_id": [ "GSM1050265", "GSM1050270" ], "type": "tissue", "id": "GDS4843_5" }, { "dataset_id": "GDS4843", "description": "soleus", "sample_id": [ "GSM1050264", "GSM1050274" ], "type": "tissue", "id": "GDS4843_6" }, { "dataset_id": "GDS4843", "description": "tibialis anterior", "sample_id": [ "GSM1050262", "GSM1050266", "GSM1050272" ], "type": "tissue", "id": "GDS4843_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4843", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4843.tab", "compression": "gz" } ], [ [ "GDS4844.tab" ], { "title": "Cystic fibrosis: rectal epithelia", "description": "Analysis of rectal mucosal epithelia from cystic fibrosis patients homozygous for the three-base-pair deletion c.1521_1523delCTT (p.Phe508del, F508del) in the cystic fibrosis transmembrane conductance regulator (CFTR). Results provide insight into molecular mechanisms underlying CF.", "type": "Expression profiling by array", "pubmed_id": "24105369", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE15568", "order": "none", "update_date": "May 22 2014", "subsets": [ { "dataset_id": "GDS4844", "description": "cystic fibrosis (CFTR D508 mutation)", "sample_id": [ "GSM389652", "GSM389653", "GSM389654", "GSM389655", "GSM389656", "GSM389657", "GSM389658", "GSM389659", "GSM389660", "GSM389661", "GSM389662", "GSM389663", "GSM389664", "GSM389665", "GSM389666", "GSM389667" ], "type": "disease state", "id": "GDS4844_1" }, { "dataset_id": "GDS4844", "description": "non cystic fibrosis", "sample_id": [ "GSM389668", "GSM389669", "GSM389670", "GSM389671", "GSM389672", "GSM389673", "GSM389674", "GSM389675", "GSM389676", "GSM389677", "GSM389678", "GSM389679", "GSM389680" ], "type": "disease state", "id": "GDS4844_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4844", "version": 1.0, "instances": "29", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4844.tab", "compression": "gz" } ], [ [ "GDS4845.tab" ], { "title": "Streptozotocin induced type 1 diabetes: liver", "description": "Analysis of liver from C57BL/6N males treated with streptozotocin (STZ) to induce type 1 diabetes (T1D). Liver mitochondria of STZ males showed increased oxygen consumption. Results provide insight into molecular mechanisms underlying the enhanced performance of T1D STZ liver mitochondria.", "type": "Expression profiling by array", "pubmed_id": "24291365", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE39752", "order": "none", "update_date": "May 22 2014", "subsets": [ { "dataset_id": "GDS4845", "description": "streptozotocin", "sample_id": [ "GSM978542", "GSM978543", "GSM978544", "GSM978545", "GSM978546", "GSM978547" ], "type": "agent", "id": "GDS4845_1" }, { "dataset_id": "GDS4845", "description": "control", "sample_id": [ "GSM978536", "GSM978537", "GSM978538", "GSM978539", "GSM978540", "GSM978541", "GSM978535" ], "type": "agent", "id": "GDS4845_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4845", "version": 1.0, "instances": "13", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4845.tab", "compression": "gz" } ], [ [ "GDS4846.tab" ], { "title": "MED1 overexpression effect on prostate cancer cell line", "description": "Analysis of LNCaP prostate cancer cells overexpressing the Mediator of RNA polymerase II transcription factor 1 (MED1). MED1 is a coactivator of the androgen receptor and other signal-activated transcription factors. Results provide insight into the role of MED1 overexpression in prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "23538858", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE41150", "order": "none", "update_date": "Apr 21 2014", "subsets": [ { "dataset_id": "GDS4846", "description": "control", "sample_id": [ "GSM1009354", "GSM1009355" ], "type": "protocol", "id": "GDS4846_1" }, { "dataset_id": "GDS4846", "description": "MED1 overexpression", "sample_id": [ "GSM1009352", "GSM1009353" ], "type": "protocol", "id": "GDS4846_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4846", "version": 1.0, "instances": "4", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4846.tab", "compression": "gz" } ], [ [ "GDS4847.tab" ], { "title": "Chloroprene effect on mouse lung: dose response and time course", "description": "Analysis of lungs of B6C3F1 females exposed to 0 to 90 ppm chloroprene (CR) for 5 or 15 days. CR, a monomer used in the production of neoprene elastomers, generates multiorgan tumors in mouse and rat cancer bioassays. Compared to rats (GDS4848), B6C3F1 mice are sensitive to CR-induced lung tumors.", "type": "Expression profiling by array", "pubmed_id": "23125180", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE40795", "order": "none", "update_date": "May 22 2014", "subsets": [ { "dataset_id": "GDS4847", "description": "5 d", "sample_id": [ "GSM1001775", "GSM1001776", "GSM1001777", "GSM1001778", "GSM1001784", "GSM1001785", "GSM1001786", "GSM1001787", "GSM1001788", "GSM1001794", "GSM1001795", "GSM1001796", "GSM1001797", "GSM1001798", "GSM1001804", "GSM1001805", "GSM1001806", "GSM1001807", "GSM1001808", "GSM1001814", "GSM1001815", "GSM1001816", "GSM1001817", "GSM1001818", "GSM1001874" ], "type": "time", "id": "GDS4847_1" }, { "dataset_id": "GDS4847", "description": "15 d", "sample_id": [ "GSM1001779", "GSM1001780", "GSM1001781", "GSM1001782", "GSM1001783", "GSM1001789", "GSM1001790", "GSM1001791", "GSM1001792", "GSM1001793", "GSM1001799", "GSM1001800", "GSM1001801", "GSM1001802", "GSM1001803", "GSM1001809", "GSM1001810", "GSM1001811", "GSM1001812", "GSM1001813", "GSM1001869", "GSM1001870", "GSM1001871", "GSM1001872", "GSM1001873" ], "type": "time", "id": "GDS4847_2" }, { "dataset_id": "GDS4847", "description": "control", "sample_id": [ "GSM1001779", "GSM1001780", "GSM1001781", "GSM1001782", "GSM1001783", "GSM1001784", "GSM1001785", "GSM1001786", "GSM1001787", "GSM1001788" ], "type": "agent", "id": "GDS4847_3" }, { "dataset_id": "GDS4847", "description": "chloroprene", "sample_id": [ "GSM1001775", "GSM1001776", "GSM1001777", "GSM1001778", "GSM1001789", "GSM1001790", "GSM1001791", "GSM1001792", "GSM1001793", "GSM1001794", "GSM1001795", "GSM1001796", "GSM1001797", "GSM1001798", "GSM1001799", "GSM1001800", "GSM1001801", "GSM1001802", "GSM1001803", "GSM1001804", "GSM1001805", "GSM1001806", "GSM1001807", "GSM1001808", "GSM1001809", "GSM1001810", "GSM1001811", "GSM1001812", "GSM1001813", "GSM1001814", "GSM1001815", "GSM1001816", "GSM1001817", "GSM1001818", "GSM1001869", "GSM1001870", "GSM1001871", "GSM1001872", "GSM1001873", "GSM1001874" ], "type": "agent", "id": "GDS4847_4" }, { "dataset_id": "GDS4847", "description": "0 ppm", "sample_id": [ "GSM1001779", "GSM1001780", "GSM1001781", "GSM1001782", "GSM1001783", "GSM1001784", "GSM1001785", "GSM1001786", "GSM1001787", "GSM1001788" ], "type": "dose", "id": "GDS4847_5" }, { "dataset_id": "GDS4847", "description": "0.3 ppm", "sample_id": [ "GSM1001775", "GSM1001776", "GSM1001777", "GSM1001778", "GSM1001869", "GSM1001870", "GSM1001871", "GSM1001872", "GSM1001873", "GSM1001874" ], "type": "dose", "id": "GDS4847_6" }, { "dataset_id": "GDS4847", "description": "2 ppm", "sample_id": [ "GSM1001799", "GSM1001800", "GSM1001801", "GSM1001802", "GSM1001803", "GSM1001804", "GSM1001805", "GSM1001806", "GSM1001807", "GSM1001808" ], "type": "dose", "id": "GDS4847_7" }, { "dataset_id": "GDS4847", "description": "13 ppm", "sample_id": [ "GSM1001789", "GSM1001790", "GSM1001791", "GSM1001792", "GSM1001793", "GSM1001794", "GSM1001795", "GSM1001796", "GSM1001797", "GSM1001798" ], "type": "dose", "id": "GDS4847_8" }, { "dataset_id": "GDS4847", "description": "90 ppm", "sample_id": [ "GSM1001809", "GSM1001810", "GSM1001811", "GSM1001812", "GSM1001813", "GSM1001814", "GSM1001815", "GSM1001816", "GSM1001817", "GSM1001818" ], "type": "dose", "id": "GDS4847_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4847", "version": 1.0, "instances": "50", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4847.tab", "compression": "gz" } ], [ [ "GDS4848.tab" ], { "title": "Chloroprene effect on rat lung: dose response and time course", "description": "Analysis of lungs of F344 females exposed to 0 to 200 ppm chloroprene (CR) for 5 or 15 days. CR, a monomer used in the production of neoprene elastomers, generates multiorgan tumors in mouse and rat cancer bioassays. Compared to mice (GDS4847), F344 rats are insensitive to CR-induced lung tumors.", "type": "Expression profiling by array", "pubmed_id": "23125180", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE40795", "order": "none", "update_date": "May 22 2014", "subsets": [ { "dataset_id": "GDS4848", "description": "5 d", "sample_id": [ "GSM1001824", "GSM1001825", "GSM1001826", "GSM1001827", "GSM1001828", "GSM1001834", "GSM1001835", "GSM1001836", "GSM1001837", "GSM1001838", "GSM1001844", "GSM1001845", "GSM1001846", "GSM1001847", "GSM1001848", "GSM1001854", "GSM1001855", "GSM1001856", "GSM1001857", "GSM1001858", "GSM1001864", "GSM1001865", "GSM1001866", "GSM1001867", "GSM1001868" ], "type": "time", "id": "GDS4848_1" }, { "dataset_id": "GDS4848", "description": "15 d", "sample_id": [ "GSM1001819", "GSM1001820", "GSM1001821", "GSM1001822", "GSM1001823", "GSM1001829", "GSM1001830", "GSM1001831", "GSM1001832", "GSM1001833", "GSM1001839", "GSM1001840", "GSM1001841", "GSM1001842", "GSM1001843", "GSM1001849", "GSM1001850", "GSM1001851", "GSM1001852", "GSM1001853", "GSM1001859", "GSM1001860", "GSM1001861", "GSM1001862", "GSM1001863" ], "type": "time", "id": "GDS4848_2" }, { "dataset_id": "GDS4848", "description": "control", "sample_id": [ "GSM1001819", "GSM1001820", "GSM1001821", "GSM1001822", "GSM1001823", "GSM1001824", "GSM1001825", "GSM1001826", "GSM1001827", "GSM1001828" ], "type": "agent", "id": "GDS4848_3" }, { "dataset_id": "GDS4848", "description": "chloroprene", "sample_id": [ "GSM1001829", "GSM1001830", "GSM1001831", "GSM1001832", "GSM1001833", "GSM1001834", "GSM1001835", "GSM1001836", "GSM1001837", "GSM1001838", "GSM1001839", "GSM1001840", "GSM1001841", "GSM1001842", "GSM1001843", "GSM1001844", "GSM1001845", "GSM1001846", "GSM1001847", "GSM1001848", "GSM1001849", "GSM1001850", "GSM1001851", "GSM1001852", "GSM1001853", "GSM1001854", "GSM1001855", "GSM1001856", "GSM1001857", "GSM1001858", "GSM1001859", "GSM1001860", "GSM1001861", "GSM1001862", "GSM1001863", "GSM1001864", "GSM1001865", "GSM1001866", "GSM1001867", "GSM1001868" ], "type": "agent", "id": "GDS4848_4" }, { "dataset_id": "GDS4848", "description": "0 ppm", "sample_id": [ "GSM1001819", "GSM1001820", "GSM1001821", "GSM1001822", "GSM1001823", "GSM1001824", "GSM1001825", "GSM1001826", "GSM1001827", "GSM1001828" ], "type": "dose", "id": "GDS4848_5" }, { "dataset_id": "GDS4848", "description": "5 ppm", "sample_id": [ "GSM1001849", "GSM1001850", "GSM1001851", "GSM1001852", "GSM1001853", "GSM1001854", "GSM1001855", "GSM1001856", "GSM1001857", "GSM1001858" ], "type": "dose", "id": "GDS4848_6" }, { "dataset_id": "GDS4848", "description": "30 ppm", "sample_id": [ "GSM1001839", "GSM1001840", "GSM1001841", "GSM1001842", "GSM1001843", "GSM1001844", "GSM1001845", "GSM1001846", "GSM1001847", "GSM1001848" ], "type": "dose", "id": "GDS4848_7" }, { "dataset_id": "GDS4848", "description": "200 ppm", "sample_id": [ "GSM1001829", "GSM1001830", "GSM1001831", "GSM1001832", "GSM1001833", "GSM1001834", "GSM1001835", "GSM1001836", "GSM1001837", "GSM1001838" ], "type": "dose", "id": "GDS4848_8" }, { "dataset_id": "GDS4848", "description": "90 ppm", "sample_id": [ "GSM1001860", "GSM1001861", "GSM1001862", "GSM1001863", "GSM1001864", "GSM1001865", "GSM1001866", "GSM1001867", "GSM1001868", "GSM1001859" ], "type": "dose", "id": "GDS4848_9" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4848", "version": 1.0, "instances": "50", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4848.tab", "compression": "gz" } ], [ [ "GDS4849.tab" ], { "title": "Acute cold exposure effect on skeletal muscle", "description": "Analysis of quadriceps muscles from C57BL/6J animals exposed to 4 degrees C for 4 hours. Results compared to those obtained from brown adipose tissues (GDS4850) in order to gain insight into the molecular processes influencing energy expenditure.", "type": "Expression profiling by array", "pubmed_id": "23446662", "platform": "GPL6103", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24613", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE40486", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4849", "description": "4 C", "sample_id": [ "GSM994872", "GSM994873" ], "type": "temperature", "id": "GDS4849_1" }, { "dataset_id": "GDS4849", "description": "room temperature", "sample_id": [ "GSM994870", "GSM994871" ], "type": "temperature", "id": "GDS4849_2" } ], "taxid": "10090", "genes": 19378, "aggregation_function": "mean", "name": "GDS4849", "version": 1.0, "instances": "4", "variables": 19380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4849.tab", "compression": "gz" } ], [ [ "GDS4850.tab" ], { "title": "Acute cold exposure effect on brown adipose tissue", "description": "Analysis of brown adipose tissue from C57BL/6J animals exposed to 4 degrees C for 4 hours. Results compared to those obtained from skeletal muscles (GDS4849) in order to gain insight into the molecular processes influencing energy expenditure.", "type": "Expression profiling by array", "pubmed_id": "23446662", "platform": "GPL6103", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24613", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE40486", "order": "ordered", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4850", "description": "4 C", "sample_id": [ "GSM994868", "GSM994869" ], "type": "temperature", "id": "GDS4850_1" }, { "dataset_id": "GDS4850", "description": "room temperature", "sample_id": [ "GSM994866", "GSM994867" ], "type": "temperature", "id": "GDS4850_2" } ], "taxid": "10090", "genes": 19378, "aggregation_function": "mean", "name": "GDS4850", "version": 1.0, "instances": "4", "variables": 19380, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4850.tab", "compression": "gz" } ], [ [ "GDS4851.tab" ], { "title": "TRPV4 depletion effect on adipocyte cell line", "description": "Analysis of 3T3-F442A adipocytes depleted for transient receptor potential vanilloid 4 (TRPV4). TRPV4 is a cation channel. Results provide insight into the function of TRPV4 in adipocytes.", "type": "Expression profiling by array", "pubmed_id": "23021218", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE40280", "order": "none", "update_date": "Apr 21 2014", "subsets": [ { "dataset_id": "GDS4851", "description": "control", "sample_id": [ "GSM990628", "GSM990629" ], "type": "protocol", "id": "GDS4851_1" }, { "dataset_id": "GDS4851", "description": "TRPV4 depletion", "sample_id": [ "GSM990630", "GSM990631" ], "type": "protocol", "id": "GDS4851_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4851", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4851.tab", "compression": "gz" } ], [ [ "GDS4852.tab" ], { "title": "Human polyomavirus JC virus (JCV) infection of clonal immortalized glial SVG cells", "description": "Analysis of fetal glial cell line SVG-derived clones 10B1 and 5F4 following infection with JCV. Clone SVG-5F4 shows low levels of viral growth, whereas clone SVG-10B1 is highly permissive to JCV infection. Results provide insight into cell type differences in JCV host range and pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24052414", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE45639", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4852", "description": "SVG 10B1 clone", "sample_id": [ "GSM1111182", "GSM1111183", "GSM1111184", "GSM1111185", "GSM1111186", "GSM1111187" ], "type": "cell line", "id": "GDS4852_1" }, { "dataset_id": "GDS4852", "description": "SVG 5F4 clone", "sample_id": [ "GSM1111188", "GSM1111189", "GSM1111190", "GSM1111191", "GSM1111192", "GSM1111193", "GSM1111194" ], "type": "cell line", "id": "GDS4852_2" }, { "dataset_id": "GDS4852", "description": "mock", "sample_id": [ "GSM1111182", "GSM1111183", "GSM1111184", "GSM1111188", "GSM1111189", "GSM1111190" ], "type": "infection", "id": "GDS4852_3" }, { "dataset_id": "GDS4852", "description": "JCV Mad-4 Strain", "sample_id": [ "GSM1111185", "GSM1111186", "GSM1111187", "GSM1111191", "GSM1111192", "GSM1111193", "GSM1111194" ], "type": "infection", "id": "GDS4852_4" }, { "dataset_id": "GDS4852", "description": "high JCV replication rate", "sample_id": [ "GSM1111185", "GSM1111186", "GSM1111187" ], "type": "other", "id": "GDS4852_5" }, { "dataset_id": "GDS4852", "description": "low JCV replication rate", "sample_id": [ "GSM1111191", "GSM1111192", "GSM1111193", "GSM1111194" ], "type": "other", "id": "GDS4852_6" }, { "dataset_id": "GDS4852", "description": "NA", "sample_id": [ "GSM1111182", "GSM1111183", "GSM1111184", "GSM1111188", "GSM1111189", "GSM1111190" ], "type": "other", "id": "GDS4852_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4852", "version": 1.0, "instances": "13", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4852.tab", "compression": "gz" } ], [ [ "GDS4853.tab" ], { "title": "Stem cell factor SOX2-deficient stomach carcinoma cell line: time course", "description": "Analysis of gastric cancer (GC) cell line AZ-521 induced to express dominant-negative SOX2 (dnSOX2), a C-terminally truncated version of SOX2, for up to 24hr. Aberrant expression of specific gastric differentiation marker SOX2 has been observed in GC. Results provide insight into role of SOX2 in GC.", "type": "Expression profiling by array", "pubmed_id": "24325912", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE42937", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4853", "description": "control", "sample_id": [ "GSM1053570", "GSM1053571", "GSM1053572", "GSM1053573", "GSM1053574", "GSM1053575", "GSM1053576", "GSM1053577", "GSM1053578", "GSM1053579" ], "type": "genotype/variation", "id": "GDS4853_1" }, { "dataset_id": "GDS4853", "description": "doxycycline-induced dnSox2", "sample_id": [ "GSM1053580", "GSM1053581", "GSM1053582", "GSM1053583", "GSM1053584", "GSM1053585", "GSM1053586", "GSM1053587", "GSM1053588", "GSM1053589" ], "type": "genotype/variation", "id": "GDS4853_2" }, { "dataset_id": "GDS4853", "description": "hour 8", "sample_id": [ "GSM1053570", "GSM1053571", "GSM1053580", "GSM1053581" ], "type": "time", "id": "GDS4853_3" }, { "dataset_id": "GDS4853", "description": "hour 12", "sample_id": [ "GSM1053572", "GSM1053573", "GSM1053582", "GSM1053583" ], "type": "time", "id": "GDS4853_4" }, { "dataset_id": "GDS4853", "description": "hour 18", "sample_id": [ "GSM1053574", "GSM1053575", "GSM1053576", "GSM1053584", "GSM1053585", "GSM1053586" ], "type": "time", "id": "GDS4853_5" }, { "dataset_id": "GDS4853", "description": "hour 24", "sample_id": [ "GSM1053577", "GSM1053578", "GSM1053579", "GSM1053587", "GSM1053588", "GSM1053589" ], "type": "time", "id": "GDS4853_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4853", "version": 1.0, "instances": "20", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4853.tab", "compression": "gz" } ], [ [ "GDS4854.tab" ], { "title": "Children with complex seizures induced by iInfluenza A (H1N1)pdm09 or rotavirus gastroenteritis: peripheral whole blood", "description": "Analysis of whole blood from pediatric seizure patients with H1N1 or rotavirus infections during acute and recovery phases. Results provide insight into molecular mechanisms underlying pathogenic differences in the complex seizures induced by influenza A(H1N1)pdm09 or rotavirus gastroenteritis.", "type": "Expression profiling by array", "pubmed_id": "24464411", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE50628", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4854", "description": "rotavirus gastroenteritis", "sample_id": [ "GSM1224914", "GSM1224913", "GSM1224912", "GSM1224911", "GSM1224910", "GSM1224909", "GSM1224908", "GSM1224907", "GSM1224906", "GSM1224905", "GSM1224904", "GSM1224903" ], "type": "infection", "id": "GDS4854_1" }, { "dataset_id": "GDS4854", "description": "influenza A(H1N1)pdm09", "sample_id": [ "GSM1224902", "GSM1224901", "GSM1224900", "GSM1224899", "GSM1224898", "GSM1224897", "GSM1224896", "GSM1224895", "GSM1224894", "GSM1224893", "GSM1224892", "GSM1224891", "GSM1224890", "GSM1224889", "GSM1224888", "GSM1224887", "GSM1224886", "GSM1224885", "GSM1224884", "GSM1224883" ], "type": "infection", "id": "GDS4854_2" }, { "dataset_id": "GDS4854", "description": "seizure", "sample_id": [ "GSM1224914", "GSM1224913", "GSM1224912", "GSM1224911", "GSM1224910", "GSM1224909", "GSM1224902", "GSM1224901", "GSM1224900", "GSM1224899", "GSM1224898", "GSM1224897", "GSM1224896", "GSM1224895", "GSM1224894", "GSM1224893" ], "type": "disease state", "id": "GDS4854_3" }, { "dataset_id": "GDS4854", "description": "control", "sample_id": [ "GSM1224908", "GSM1224907", "GSM1224906", "GSM1224905", "GSM1224904", "GSM1224903", "GSM1224892", "GSM1224891", "GSM1224890", "GSM1224889", "GSM1224888", "GSM1224887", "GSM1224886", "GSM1224885", "GSM1224884", "GSM1224883" ], "type": "disease state", "id": "GDS4854_4" }, { "dataset_id": "GDS4854", "description": "acute phase", "sample_id": [ "GSM1224913", "GSM1224911", "GSM1224909", "GSM1224907", "GSM1224905", "GSM1224903", "GSM1224901", "GSM1224899", "GSM1224897", "GSM1224895", "GSM1224893", "GSM1224891", "GSM1224889", "GSM1224887", "GSM1224885", "GSM1224883" ], "type": "other", "id": "GDS4854_5" }, { "dataset_id": "GDS4854", "description": "recovery phase", "sample_id": [ "GSM1224914", "GSM1224912", "GSM1224910", "GSM1224908", "GSM1224906", "GSM1224904", "GSM1224902", "GSM1224900", "GSM1224898", "GSM1224896", "GSM1224894", "GSM1224892", "GSM1224890", "GSM1224888", "GSM1224886", "GSM1224884" ], "type": "other", "id": "GDS4854_6" }, { "dataset_id": "GDS4854", "description": "Ic patient 1", "sample_id": [ "GSM1224883", "GSM1224884" ], "type": "individual", "id": "GDS4854_7" }, { "dataset_id": "GDS4854", "description": "Ic patient 2", "sample_id": [ "GSM1224885", "GSM1224886" ], "type": "individual", "id": "GDS4854_8" }, { "dataset_id": "GDS4854", "description": "Ic patient 3", "sample_id": [ "GSM1224887", "GSM1224888" ], "type": "individual", "id": "GDS4854_9" }, { "dataset_id": "GDS4854", "description": "Ic patient 4", "sample_id": [ "GSM1224889", "GSM1224890" ], "type": "individual", "id": "GDS4854_10" }, { "dataset_id": "GDS4854", "description": "Ic patient 5", "sample_id": [ "GSM1224891", "GSM1224892" ], "type": "individual", "id": "GDS4854_11" }, { "dataset_id": "GDS4854", "description": "Is patient 1", "sample_id": [ "GSM1224893", "GSM1224894" ], "type": "individual", "id": "GDS4854_12" }, { "dataset_id": "GDS4854", "description": "Is patient 2", "sample_id": [ "GSM1224895", "GSM1224896" ], "type": "individual", "id": "GDS4854_13" }, { "dataset_id": "GDS4854", "description": "Is patient 3", "sample_id": [ "GSM1224897", "GSM1224898" ], "type": "individual", "id": "GDS4854_14" }, { "dataset_id": "GDS4854", "description": "Is patient 4", "sample_id": [ "GSM1224899", "GSM1224900" ], "type": "individual", "id": "GDS4854_15" }, { "dataset_id": "GDS4854", "description": "Is patient 5", "sample_id": [ "GSM1224901", "GSM1224902" ], "type": "individual", "id": "GDS4854_16" }, { "dataset_id": "GDS4854", "description": "Rc patient 1", "sample_id": [ "GSM1224903", "GSM1224904" ], "type": "individual", "id": "GDS4854_17" }, { "dataset_id": "GDS4854", "description": "Rc patient 2", "sample_id": [ "GSM1224905", "GSM1224906" ], "type": "individual", "id": "GDS4854_18" }, { "dataset_id": "GDS4854", "description": "Rc patient 3", "sample_id": [ "GSM1224907", "GSM1224908" ], "type": "individual", "id": "GDS4854_19" }, { "dataset_id": "GDS4854", "description": "Rs patient 1", "sample_id": [ "GSM1224909", "GSM1224910" ], "type": "individual", "id": "GDS4854_20" }, { "dataset_id": "GDS4854", "description": "Rs patient 2", "sample_id": [ "GSM1224911", "GSM1224912" ], "type": "individual", "id": "GDS4854_21" }, { "dataset_id": "GDS4854", "description": "Rs patient 3", "sample_id": [ "GSM1224913", "GSM1224914" ], "type": "individual", "id": "GDS4854_22" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4854", "version": 1.0, "instances": "32", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4854.tab", "compression": "gz" } ], [ [ "GDS4855.tab" ], { "title": "Pandemic and seasonal H1N1 influenza virus infections of bronchial epithelial cells in vitro", "description": "Analysis of well-differentiated primary lung bronchial epithelial cells 36 hs after infection with various H1N1 influenza isolates: seasonal H1N1 BN/59, pandemic H1N1 KY/136 and KY/180. Results provide insight into the molecular basis of host responses to different H1N1 Influenza isolates.", "type": "Expression profiling by array", "pubmed_id": "24244384", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE48466", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4855", "description": "BN/59 (seasonal H1N1)", "sample_id": [ "GSM1179364", "GSM1179365", "GSM1179366" ], "type": "infection", "id": "GDS4855_1" }, { "dataset_id": "GDS4855", "description": "KY/136 (pandemic H1N1)", "sample_id": [ "GSM1179367", "GSM1179368", "GSM1179369" ], "type": "infection", "id": "GDS4855_2" }, { "dataset_id": "GDS4855", "description": "KY/180 (pandemicH1N1)", "sample_id": [ "GSM1179370", "GSM1179371", "GSM1179372" ], "type": "infection", "id": "GDS4855_3" }, { "dataset_id": "GDS4855", "description": "uninfected", "sample_id": [ "GSM1179373", "GSM1179374", "GSM1179375" ], "type": "infection", "id": "GDS4855_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4855", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4855.tab", "compression": "gz" } ], [ [ "GDS4856.tab" ], { "title": "Transcription factor Yin Yang 1 deficiency effect on the skeletal muscle", "description": "Analysis of the soleus muscles of transcription factor Yin Yang 1 (YY1) deficient animals. Many nuclear genes encoding mitochondrial proteins contain binding sites for YY1 in their proximal promoters. Results provide insight into the role of YY1 in mitochondrial function.", "type": "Expression profiling by array", "pubmed_id": "22711985", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE39009", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4856", "description": "wild type", "sample_id": [ "GSM953748", "GSM953749", "GSM953750" ], "type": "genotype/variation", "id": "GDS4856_1" }, { "dataset_id": "GDS4856", "description": "YY1 null", "sample_id": [ "GSM953751", "GSM953752", "GSM953753", "GSM953754" ], "type": "genotype/variation", "id": "GDS4856_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4856", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4856.tab", "compression": "gz" } ], [ [ "GDS4857.tab" ], { "title": "Obstructive sleep apnea: visceral fat", "description": "Analysis of visceral fat samples from individuals with obstructive sleep apnea (OSA). OSA is associated with metabolic dysregulation and systemic inflammation. Results provide insight into the effect of OSA on visceral fat at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "23288968", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE38792", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS4857", "description": "control", "sample_id": [ "GSM949164", "GSM949166", "GSM949168", "GSM949169", "GSM949170", "GSM949171", "GSM949172", "GSM949173" ], "type": "disease state", "id": "GDS4857_1" }, { "dataset_id": "GDS4857", "description": "obstructive sleep apnea", "sample_id": [ "GSM949174", "GSM949175", "GSM949176", "GSM949177", "GSM949178", "GSM949179", "GSM949180", "GSM949181", "GSM949182", "GSM949183" ], "type": "disease state", "id": "GDS4857_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4857", "version": 1.0, "instances": "18", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4857.tab", "compression": "gz" } ], [ [ "GDS4858.tab" ], { "title": "Skeletal muscles from men and women of various ages", "description": "Analysis of biceps brachii muscles from men and women 19 to 28 or 65 to 76 years of age. Results provide insight into the influence of gender on age-related changes in the molecular properties of the skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "23418191", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE38718", "order": "none", "update_date": "Apr 22 2014", "subsets": [ { "dataset_id": "GDS4858", "description": "women", "sample_id": [ "GSM948623", "GSM948624", "GSM948625", "GSM948626", "GSM948627", "GSM948628", "GSM948629", "GSM948637", "GSM948638", "GSM948639", "GSM948640" ], "type": "gender", "id": "GDS4858_1" }, { "dataset_id": "GDS4858", "description": "men", "sample_id": [ "GSM948630", "GSM948631", "GSM948632", "GSM948633", "GSM948634", "GSM948635", "GSM948636", "GSM948641", "GSM948642", "GSM948643", "GSM948644" ], "type": "gender", "id": "GDS4858_2" }, { "dataset_id": "GDS4858", "description": "19 to 28 years", "sample_id": [ "GSM948623", "GSM948624", "GSM948625", "GSM948626", "GSM948627", "GSM948628", "GSM948629", "GSM948630", "GSM948631", "GSM948632", "GSM948633", "GSM948634", "GSM948635", "GSM948636" ], "type": "age", "id": "GDS4858_3" }, { "dataset_id": "GDS4858", "description": "65 to 76 years", "sample_id": [ "GSM948637", "GSM948638", "GSM948639", "GSM948640", "GSM948641", "GSM948642", "GSM948643", "GSM948644" ], "type": "age", "id": "GDS4858_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4858", "version": 1.0, "instances": "22", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4858.tab", "compression": "gz" } ], [ [ "GDS4859.tab" ], { "title": "Prolactinoma", "description": "Analysis of prolactinomas and normal pituitary tissues. Prolactinoma is a benign pituitary tumor that produces excessive prolactin resulting in hyperprolactinemia. Results provide insight into molecular mechanisms underlying the pathogenesis of this pituitary condition.", "type": "Expression profiling by array", "pubmed_id": "22635680", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE36314", "order": "none", "update_date": "Jun 25 2014", "subsets": [ { "dataset_id": "GDS4859", "description": "prolactinoma", "sample_id": [ "GSM887860", "GSM887861", "GSM887862", "GSM887863" ], "type": "disease state", "id": "GDS4859_1" }, { "dataset_id": "GDS4859", "description": "normal pituitary", "sample_id": [ "GSM887864", "GSM887865", "GSM887866" ], "type": "disease state", "id": "GDS4859_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS4859", "version": 1.0, "instances": "7", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4859.tab", "compression": "gz" } ], [ [ "GDS486.tab" ], { "title": "Rheumatoid arthritis and TNFalpha", "description": "Analysis of rheumatoid arthritis synovial fibroblasts (RASF) expressing dominant negative form of inhibitor of nuclear factor kappa B (Ik-B). Ik-B blocks TNFalpha. Cells treated with TNFalpha at 18 hours. TNFalpha known to increase progression of RA.", "type": "Expression profiling by array", "pubmed_id": "14872484", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE766", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS486", "description": "RASF Ik-B", "sample_id": [ "GSM11947", "GSM11954", "GSM11955" ], "type": "cell line", "id": "GDS486_1" }, { "dataset_id": "GDS486", "description": "RASF control", "sample_id": [ "GSM11956", "GSM11957", "GSM11958" ], "type": "cell line", "id": "GDS486_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS486", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS486.tab", "compression": "gz" } ], [ [ "GDS4860.tab" ], { "title": "All-trans retinoic acid (ATRA) vitamin A and 1,25-dihydroxyvitamin D3 (1,25D3) vitamin D stimulated peripheral blood monocytes", "description": "Analysis of monocytes stimulated with biologically active forms of vitamin A and vitamin D. Vitamin A plays a role in host defense against Mycobacterium tuberculosis. Results provide insight into molecular mechanisms underlying the antimicrobial activities for vitamin A and vitamin D in monocytes.", "type": "Expression profiling by array", "pubmed_id": "24501203", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE46268", "order": "none", "update_date": "Jan 14 2016", "subsets": [ { "dataset_id": "GDS4860", "description": "control", "sample_id": [ "GSM1127890", "GSM1127891", "GSM1127892", "GSM1127893" ], "type": "agent", "id": "GDS4860_1" }, { "dataset_id": "GDS4860", "description": "vitamin A (ATRA)", "sample_id": [ "GSM1127894", "GSM1127895", "GSM1127896", "GSM1127897" ], "type": "agent", "id": "GDS4860_2" }, { "dataset_id": "GDS4860", "description": "vitamin D (1,25D3)", "sample_id": [ "GSM1127898", "GSM1127899", "GSM1127900", "GSM1127901" ], "type": "agent", "id": "GDS4860_3" }, { "dataset_id": "GDS4860", "description": "donor 1", "sample_id": [ "GSM1127898", "GSM1127894", "GSM1127890" ], "type": "individual", "id": "GDS4860_4" }, { "dataset_id": "GDS4860", "description": "donor 2", "sample_id": [ "GSM1127899", "GSM1127895", "GSM1127891" ], "type": "individual", "id": "GDS4860_5" }, { "dataset_id": "GDS4860", "description": "donor 3", "sample_id": [ "GSM1127900", "GSM1127896", "GSM1127892" ], "type": "individual", "id": "GDS4860_6" }, { "dataset_id": "GDS4860", "description": "donor 4", "sample_id": [ "GSM1127901", "GSM1127897", "GSM1127893" ], "type": "individual", "id": "GDS4860_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4860", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4860.tab", "compression": "gz" } ], [ [ "GDS4861.tab" ], { "title": "Adenovirus and lentivirus vector effects on midbrain neuroprogenitor cell cultures: time course", "description": "Temporal analysis of differentiated mNPC cultures transduced with three vectors: Helper-dependent (HD) human (HAd) and canine (CAV-2) adenoviruses and VSV-G-pseudotyped self-inactivating HIV-1 vector (LV). Results provide insight into the toxicogenomic profiles of these viral vectors in mNPCs.", "type": "Expression profiling by array", "pubmed_id": "23922808", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE47130", "order": "none", "update_date": "Jan 14 2016", "subsets": [ { "dataset_id": "GDS4861", "description": "control", "sample_id": [ "GSM1145487", "GSM1145488", "GSM1145489", "GSM1145490", "GSM1145491", "GSM1145492" ], "type": "agent", "id": "GDS4861_1" }, { "dataset_id": "GDS4861", "description": "HD-canine adenovirus", "sample_id": [ "GSM1145493", "GSM1145494", "GSM1145495", "GSM1145496", "GSM1145497", "GSM1145498" ], "type": "agent", "id": "GDS4861_2" }, { "dataset_id": "GDS4861", "description": "HD-human adenovirus", "sample_id": [ "GSM1145499", "GSM1145500", "GSM1145501", "GSM1145502", "GSM1145503", "GSM1145504" ], "type": "agent", "id": "GDS4861_3" }, { "dataset_id": "GDS4861", "description": "VSV-G-pseudotyped SIN HIV-1", "sample_id": [ "GSM1145505", "GSM1145506", "GSM1145507", "GSM1145508", "GSM1145509", "GSM1145510" ], "type": "agent", "id": "GDS4861_4" }, { "dataset_id": "GDS4861", "description": "adenoviral-associated vector 2/9", "sample_id": [ "GSM1145511", "GSM1145512", "GSM1145513", "GSM1145514", "GSM1145515", "GSM1145516" ], "type": "agent", "id": "GDS4861_5" }, { "dataset_id": "GDS4861", "description": "2 hours", "sample_id": [ "GSM1145487", "GSM1145488", "GSM1145489", "GSM1145493", "GSM1145494", "GSM1145495", "GSM1145499", "GSM1145500", "GSM1145501", "GSM1145505", "GSM1145506", "GSM1145507", "GSM1145511", "GSM1145512", "GSM1145513" ], "type": "time", "id": "GDS4861_6" }, { "dataset_id": "GDS4861", "description": "5 days", "sample_id": [ "GSM1145490", "GSM1145491", "GSM1145492", "GSM1145496", "GSM1145497", "GSM1145498", "GSM1145502", "GSM1145503", "GSM1145504", "GSM1145508", "GSM1145509", "GSM1145510", "GSM1145514", "GSM1145515", "GSM1145516" ], "type": "time", "id": "GDS4861_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4861", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4861.tab", "compression": "gz" } ], [ [ "GDS4863.tab" ], { "title": "HIV envelope protein gp120 effect on activated B cells from healthy donors: time course", "description": "Temporal analysis of B cells isolated from healthy donors in response to activation in the presence of HIV-1 envelope protein gp120 with high (gp120++) or low (gp120-) affinity for integrin \u03b14\u03b27. Results provide insight into mechanisms by which \u03b14\u03b27-gp120 interaction negatively affects B cells.", "type": "Expression profiling by array", "pubmed_id": "24162774", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE49019", "order": "none", "update_date": "Jan 15 2016", "subsets": [ { "dataset_id": "GDS4863", "description": "donor AD", "sample_id": [ "GSM1192215", "GSM1192224", "GSM1192221", "GSM1192218", "GSM1192223", "GSM1192220", "GSM1192217", "GSM1192222", "GSM1192219", "GSM1192216" ], "type": "individual", "id": "GDS4863_1" }, { "dataset_id": "GDS4863", "description": "donor AE", "sample_id": [ "GSM1192225", "GSM1192234", "GSM1192231", "GSM1192228", "GSM1192233", "GSM1192230", "GSM1192227", "GSM1192232", "GSM1192229", "GSM1192226" ], "type": "individual", "id": "GDS4863_2" }, { "dataset_id": "GDS4863", "description": "donor AF", "sample_id": [ "GSM1192235", "GSM1192244", "GSM1192241", "GSM1192238", "GSM1192243", "GSM1192240", "GSM1192237", "GSM1192242", "GSM1192239", "GSM1192236" ], "type": "individual", "id": "GDS4863_3" }, { "dataset_id": "GDS4863", "description": "donor AG", "sample_id": [ "GSM1192245", "GSM1192248", "GSM1192247", "GSM1192246" ], "type": "individual", "id": "GDS4863_4" }, { "dataset_id": "GDS4863", "description": "donor AH", "sample_id": [ "GSM1192249", "GSM1192252", "GSM1192251", "GSM1192250" ], "type": "individual", "id": "GDS4863_5" }, { "dataset_id": "GDS4863", "description": "donor AJ", "sample_id": [ "GSM1192253", "GSM1192256", "GSM1192255", "GSM1192254" ], "type": "individual", "id": "GDS4863_6" }, { "dataset_id": "GDS4863", "description": "mock", "sample_id": [ "GSM1192245", "GSM1192249", "GSM1192253", "GSM1192215", "GSM1192225", "GSM1192235" ], "type": "protocol", "id": "GDS4863_7" }, { "dataset_id": "GDS4863", "description": "activated", "sample_id": [ "GSM1192222", "GSM1192232", "GSM1192242", "GSM1192246", "GSM1192250", "GSM1192254", "GSM1192219", "GSM1192229", "GSM1192239", "GSM1192216", "GSM1192226", "GSM1192236" ], "type": "protocol", "id": "GDS4863_8" }, { "dataset_id": "GDS4863", "description": "activated, gp120-", "sample_id": [ "GSM1192224", "GSM1192234", "GSM1192244", "GSM1192248", "GSM1192252", "GSM1192256", "GSM1192221", "GSM1192231", "GSM1192241", "GSM1192218", "GSM1192228", "GSM1192238" ], "type": "protocol", "id": "GDS4863_9" }, { "dataset_id": "GDS4863", "description": "activated, gp120++", "sample_id": [ "GSM1192247", "GSM1192251", "GSM1192255", "GSM1192223", "GSM1192233", "GSM1192243", "GSM1192220", "GSM1192230", "GSM1192240", "GSM1192217", "GSM1192227", "GSM1192237" ], "type": "protocol", "id": "GDS4863_10" }, { "dataset_id": "GDS4863", "description": "0 hour", "sample_id": [ "GSM1192235", "GSM1192225", "GSM1192215" ], "type": "time", "id": "GDS4863_11" }, { "dataset_id": "GDS4863", "description": "0.5 hour", "sample_id": [ "GSM1192236", "GSM1192226", "GSM1192216", "GSM1192237", "GSM1192227", "GSM1192217", "GSM1192238", "GSM1192228", "GSM1192218" ], "type": "time", "id": "GDS4863_12" }, { "dataset_id": "GDS4863", "description": "3 hours", "sample_id": [ "GSM1192239", "GSM1192229", "GSM1192219", "GSM1192240", "GSM1192230", "GSM1192220", "GSM1192241", "GSM1192231", "GSM1192221" ], "type": "time", "id": "GDS4863_13" }, { "dataset_id": "GDS4863", "description": "6 hours", "sample_id": [ "GSM1192253", "GSM1192249", "GSM1192245", "GSM1192254", "GSM1192250", "GSM1192246", "GSM1192242", "GSM1192232", "GSM1192222", "GSM1192243", "GSM1192233", "GSM1192223", "GSM1192256", "GSM1192252", "GSM1192248", "GSM1192244", "GSM1192234", "GSM1192224", "GSM1192255", "GSM1192251", "GSM1192247" ], "type": "time", "id": "GDS4863_14" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4863", "version": 1.0, "instances": "42", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4863.tab", "compression": "gz" } ], [ [ "GDS4864.tab" ], { "title": "Renal tubular von Hippel-Lindau protein preconditional knockout effect on rhabdomyolysis-induced AKI kidney", "description": "Analysis of kidney from transgenics depleted for renal tubular von Hippel-Lindau protein (VHL) then injected with glycerol to induce acute kidney injury (AKI). VHL is a ubiquitin ligase involved in the HIF-\u03b1 degradation process. Results provide insight into the role of HIF activation in AKI.", "type": "Expression profiling by array", "pubmed_id": "23970125", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE44925", "order": "none", "update_date": "Feb 08 2016", "subsets": [ { "dataset_id": "GDS4864", "description": "control", "sample_id": [ "GSM1093973", "GSM1093974", "GSM1093975" ], "type": "protocol", "id": "GDS4864_1" }, { "dataset_id": "GDS4864", "description": "VHL knockout", "sample_id": [ "GSM1093976", "GSM1093977", "GSM1093978", "GSM1093984" ], "type": "protocol", "id": "GDS4864_2" }, { "dataset_id": "GDS4864", "description": "induced acute kidney injury", "sample_id": [ "GSM1093979", "GSM1093980", "GSM1093981", "GSM1093982", "GSM1093983" ], "type": "protocol", "id": "GDS4864_3" }, { "dataset_id": "GDS4864", "description": "VHL knockout + induced acute kidney injury", "sample_id": [ "GSM1093985", "GSM1093986", "GSM1093987", "GSM1093988" ], "type": "protocol", "id": "GDS4864_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4864", "version": 1.0, "instances": "16", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4864.tab", "compression": "gz" } ], [ [ "GDS4865.tab" ], { "title": "P81S von Hippel-Lindau mutation effect on embryonic stem cell teratomas", "description": "Analysis of teratomas from nude mice injected with von Hippel-Lindau (VHL)-deficient mouse ES cells stably expressing human P81S VHL protein. P81S teratomas are resistant to ionizing radiation-induced apoptosis. Results provide insight into molecular mechanisms underlying this adaptive response.", "type": "Expression profiling by array", "pubmed_id": "23990666", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE37464", "order": "none", "update_date": "Oct 31 2014", "subsets": [ { "dataset_id": "GDS4865", "description": "VHL P81S transgene", "sample_id": [ "GSM920545", "GSM920546", "GSM920547", "GSM920548" ], "type": "genotype/variation", "id": "GDS4865_1" }, { "dataset_id": "GDS4865", "description": "VHL R167Q transgene", "sample_id": [ "GSM920552", "GSM920553", "GSM920554" ], "type": "genotype/variation", "id": "GDS4865_2" }, { "dataset_id": "GDS4865", "description": "VHL wildtype transgene", "sample_id": [ "GSM920549", "GSM920550", "GSM920551" ], "type": "genotype/variation", "id": "GDS4865_3" }, { "dataset_id": "GDS4865", "description": "phenotype: apoptosis-resistant", "sample_id": [ "GSM920545", "GSM920546", "GSM920547", "GSM920548" ], "type": "other", "id": "GDS4865_4" }, { "dataset_id": "GDS4865", "description": "phenotype: apoptotic", "sample_id": [ "GSM920549", "GSM920550", "GSM920551", "GSM920552", "GSM920553", "GSM920554" ], "type": "other", "id": "GDS4865_5" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4865", "version": 1.0, "instances": "10", "variables": 25182, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4865.tab", "compression": "gz" } ], [ [ "GDS4866.tab" ], { "title": "Progesterone effect on uteri of ovariectomized, steroid receptor coregulator-2 deficient mutants", "description": "Analysis of uteri from steroid receptor coregulator-2 (SRC-2) mutants that were ovariectomized at 6 weeks and treated with progesterone (P4) 2 weeks later. SRC-2 is a member of the p160/SRC family of coregulators. Results provide mechanistic insight into SRC-2's role in endometrial decidualization.", "type": "Expression profiling by array", "pubmed_id": "24571987", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE31406", "order": "none", "update_date": "Feb 10 2016", "subsets": [ { "dataset_id": "GDS4866", "description": "control", "sample_id": [ "GSM779125", "GSM779126", "GSM779127", "GSM779128", "GSM779129", "GSM779130" ], "type": "genotype/variation", "id": "GDS4866_1" }, { "dataset_id": "GDS4866", "description": "SRC-2 mutant", "sample_id": [ "GSM779131", "GSM779132", "GSM779133", "GSM779134", "GSM779135", "GSM779136" ], "type": "genotype/variation", "id": "GDS4866_2" }, { "dataset_id": "GDS4866", "description": "control", "sample_id": [ "GSM779125", "GSM779126", "GSM779127", "GSM779131", "GSM779132", "GSM779133" ], "type": "agent", "id": "GDS4866_3" }, { "dataset_id": "GDS4866", "description": "progesterone", "sample_id": [ "GSM779128", "GSM779129", "GSM779130", "GSM779134", "GSM779135", "GSM779136" ], "type": "agent", "id": "GDS4866_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4866", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4866.tab", "compression": "gz" } ], [ [ "GDS4867.tab" ], { "title": "T-cell factor 1-deficient thymic lymphoma", "description": "Analysis of thymocytes collected from Tcf1-/- animals with thymic lymphoma. Tcf1-/- animals of similar age without tumors and Tcf1+/- animals were also examined. Tcf1 is a Wnt-responsive transcription factor. Results provide insight into the role of Tcf1 in the development of thymic lymphomas.", "type": "Expression profiling by array", "pubmed_id": "23185135", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE54976", "order": "none", "update_date": "Feb 10 2016", "subsets": [ { "dataset_id": "GDS4867", "description": "thymus", "sample_id": [ "GSM1327387", "GSM1327388", "GSM1327390", "GSM1327392", "GSM1327393", "GSM1327382", "GSM1327383", "GSM1327384", "GSM1327389" ], "type": "tissue", "id": "GDS4867_1" }, { "dataset_id": "GDS4867", "description": "thymic lymphoma", "sample_id": [ "GSM1327385", "GSM1327386", "GSM1327391", "GSM1327394", "GSM1327395", "GSM1327396", "GSM1327397", "GSM1327398" ], "type": "tissue", "id": "GDS4867_2" }, { "dataset_id": "GDS4867", "description": "Tcf1+/-", "sample_id": [ "GSM1327387", "GSM1327388", "GSM1327390", "GSM1327392", "GSM1327393" ], "type": "genotype/variation", "id": "GDS4867_3" }, { "dataset_id": "GDS4867", "description": "Tcf1-/-", "sample_id": [ "GSM1327382", "GSM1327383", "GSM1327384", "GSM1327389", "GSM1327385", "GSM1327386", "GSM1327391", "GSM1327394", "GSM1327395", "GSM1327396", "GSM1327397", "GSM1327398" ], "type": "genotype/variation", "id": "GDS4867_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4867", "version": 1.0, "instances": "17", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4867.tab", "compression": "gz" } ], [ [ "GDS4868.tab" ], { "title": "Interleukin-3 effect on acute myeloid leukemia patient mononuclear cells: time course", "description": "Analysis of mononuclear cells from acute myeloid leukemia patients (AML 1-4) cultured in the presence of interleukin-3 (IL-3) for up to 16hrs. The overexpression of IL-3R\u03b1 in AML has been associated with reduced overall survival. Results provide insight into the role of IL-3 signaling in AML.", "type": "Expression profiling by array", "pubmed_id": "24598054", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE51402", "order": "none", "update_date": "Feb 25 2016", "subsets": [ { "dataset_id": "GDS4868", "description": "AML 1", "sample_id": [ "GSM1244794", "GSM1244801", "GSM1244808", "GSM1244793" ], "type": "individual", "id": "GDS4868_1" }, { "dataset_id": "GDS4868", "description": "AML 2", "sample_id": [ "GSM1244796", "GSM1244803", "GSM1244795", "GSM1244802" ], "type": "individual", "id": "GDS4868_2" }, { "dataset_id": "GDS4868", "description": "AML 3", "sample_id": [ "GSM1244798", "GSM1244805", "GSM1244797", "GSM1244804" ], "type": "individual", "id": "GDS4868_3" }, { "dataset_id": "GDS4868", "description": "AML 4", "sample_id": [ "GSM1244800", "GSM1244807", "GSM1244799", "GSM1244806" ], "type": "individual", "id": "GDS4868_4" }, { "dataset_id": "GDS4868", "description": "t(9;11), 11q23", "sample_id": [ "GSM1244794", "GSM1244801", "GSM1244808", "GSM1244793" ], "type": "genotype/variation", "id": "GDS4868_5" }, { "dataset_id": "GDS4868", "description": "del(11)(q23)", "sample_id": [ "GSM1244796", "GSM1244803", "GSM1244795", "GSM1244802" ], "type": "genotype/variation", "id": "GDS4868_6" }, { "dataset_id": "GDS4868", "description": "normal cytogenetics", "sample_id": [ "GSM1244798", "GSM1244805", "GSM1244797", "GSM1244804", "GSM1244800", "GSM1244807", "GSM1244799", "GSM1244806" ], "type": "genotype/variation", "id": "GDS4868_7" }, { "dataset_id": "GDS4868", "description": "control", "sample_id": [ "GSM1244806", "GSM1244799", "GSM1244804", "GSM1244797", "GSM1244802", "GSM1244795", "GSM1244793", "GSM1244808" ], "type": "agent", "id": "GDS4868_8" }, { "dataset_id": "GDS4868", "description": "IL-3", "sample_id": [ "GSM1244807", "GSM1244800", "GSM1244805", "GSM1244798", "GSM1244803", "GSM1244796", "GSM1244801", "GSM1244794" ], "type": "agent", "id": "GDS4868_9" }, { "dataset_id": "GDS4868", "description": "6 hours", "sample_id": [ "GSM1244806", "GSM1244807", "GSM1244804", "GSM1244805", "GSM1244802", "GSM1244803", "GSM1244793", "GSM1244801" ], "type": "time", "id": "GDS4868_10" }, { "dataset_id": "GDS4868", "description": "16 hours", "sample_id": [ "GSM1244799", "GSM1244800", "GSM1244797", "GSM1244798", "GSM1244795", "GSM1244796", "GSM1244808", "GSM1244794" ], "type": "time", "id": "GDS4868_11" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4868", "version": 1.0, "instances": "16", "variables": 26808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4868.tab", "compression": "gz" } ], [ [ "GDS4869.tab" ], { "title": "Imatinib mesylate effect on bone marrow hematopoietic cells of chronic myeloid leukemia patients", "description": "Analysis of bone marrow hematopoietic cells in chronic myeloid leukemia (CML) patients one month after imatinib mesylate (IM) therapy. CML is caused by expression of the BCR/ABL fusion oncogene. Results provide insight into the molecular consequences of IM blockade of oncoprotein Bcr-Abl in CML.", "type": "Expression profiling by array", "pubmed_id": "22388797", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE33075", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4869", "description": "patient A", "sample_id": [ "GSM817258", "GSM817304" ], "type": "individual", "id": "GDS4869_1" }, { "dataset_id": "GDS4869", "description": "patient B", "sample_id": [ "GSM818670", "GSM818678" ], "type": "individual", "id": "GDS4869_2" }, { "dataset_id": "GDS4869", "description": "patient C", "sample_id": [ "GSM818671", "GSM818679" ], "type": "individual", "id": "GDS4869_3" }, { "dataset_id": "GDS4869", "description": "patient D", "sample_id": [ "GSM818672", "GSM818680" ], "type": "individual", "id": "GDS4869_4" }, { "dataset_id": "GDS4869", "description": "patient E", "sample_id": [ "GSM818673", "GSM818681" ], "type": "individual", "id": "GDS4869_5" }, { "dataset_id": "GDS4869", "description": "patient F", "sample_id": [ "GSM818674", "GSM818682" ], "type": "individual", "id": "GDS4869_6" }, { "dataset_id": "GDS4869", "description": "patient G", "sample_id": [ "GSM818675", "GSM818683" ], "type": "individual", "id": "GDS4869_7" }, { "dataset_id": "GDS4869", "description": "patient H", "sample_id": [ "GSM818684", "GSM818676" ], "type": "individual", "id": "GDS4869_8" }, { "dataset_id": "GDS4869", "description": "patient I", "sample_id": [ "GSM818677", "GSM818685" ], "type": "individual", "id": "GDS4869_9" }, { "dataset_id": "GDS4869", "description": "healthy donor", "sample_id": [ "GSM818813", "GSM818814", "GSM818815", "GSM818816", "GSM818817", "GSM818818", "GSM818819", "GSM818824", "GSM818825" ], "type": "individual", "id": "GDS4869_10" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM817258", "GSM817304" ], "type": "gender", "id": "GDS4869_11" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818670", "GSM818678" ], "type": "gender", "id": "GDS4869_12" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818671", "GSM818679" ], "type": "gender", "id": "GDS4869_13" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818672", "GSM818680" ], "type": "gender", "id": "GDS4869_14" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818673", "GSM818681" ], "type": "gender", "id": "GDS4869_15" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818674", "GSM818682" ], "type": "gender", "id": "GDS4869_16" }, { "dataset_id": "GDS4869", "description": "female", "sample_id": [ "GSM818675", "GSM818683" ], "type": "gender", "id": "GDS4869_17" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818684", "GSM818676" ], "type": "gender", "id": "GDS4869_18" }, { "dataset_id": "GDS4869", "description": "male", "sample_id": [ "GSM818677", "GSM818685" ], "type": "gender", "id": "GDS4869_19" }, { "dataset_id": "GDS4869", "description": "n/a", "sample_id": [ "GSM818813", "GSM818814", "GSM818815", "GSM818816", "GSM818817", "GSM818818", "GSM818819", "GSM818824", "GSM818825" ], "type": "gender", "id": "GDS4869_20" }, { "dataset_id": "GDS4869", "description": "51", "sample_id": [ "GSM817258", "GSM817304" ], "type": "age", "id": "GDS4869_21" }, { "dataset_id": "GDS4869", "description": "70", "sample_id": [ "GSM818670", "GSM818678" ], "type": "age", "id": "GDS4869_22" }, { "dataset_id": "GDS4869", "description": "74", "sample_id": [ "GSM818671", "GSM818679" ], "type": "age", "id": "GDS4869_23" }, { "dataset_id": "GDS4869", "description": "54", "sample_id": [ "GSM818672", "GSM818680" ], "type": "age", "id": "GDS4869_24" }, { "dataset_id": "GDS4869", "description": "75", "sample_id": [ "GSM818673", "GSM818681" ], "type": "age", "id": "GDS4869_25" }, { "dataset_id": "GDS4869", "description": "73", "sample_id": [ "GSM818674", "GSM818682" ], "type": "age", "id": "GDS4869_26" }, { "dataset_id": "GDS4869", "description": "62", "sample_id": [ "GSM818675", "GSM818683" ], "type": "age", "id": "GDS4869_27" }, { "dataset_id": "GDS4869", "description": "42", "sample_id": [ "GSM818684", "GSM818676" ], "type": "age", "id": "GDS4869_28" }, { "dataset_id": "GDS4869", "description": "60", "sample_id": [ "GSM818677", "GSM818685" ], "type": "age", "id": "GDS4869_29" }, { "dataset_id": "GDS4869", "description": "n/a", "sample_id": [ "GSM818813", "GSM818814", "GSM818815", "GSM818816", "GSM818817", "GSM818818", "GSM818819", "GSM818824", "GSM818825" ], "type": "age", "id": "GDS4869_30" }, { "dataset_id": "GDS4869", "description": "control", "sample_id": [ "GSM818813", "GSM818814", "GSM818815", "GSM818816", "GSM818817", "GSM818818", "GSM818819", "GSM818824", "GSM818825" ], "type": "protocol", "id": "GDS4869_31" }, { "dataset_id": "GDS4869", "description": "pre-Imatinib", "sample_id": [ "GSM817258", "GSM818670", "GSM818671", "GSM818672", "GSM818673", "GSM818674", "GSM818675", "GSM818676", "GSM818677" ], "type": "protocol", "id": "GDS4869_32" }, { "dataset_id": "GDS4869", "description": "post-Imatinib", "sample_id": [ "GSM817304", "GSM818678", "GSM818679", "GSM818680", "GSM818681", "GSM818682", "GSM818683", "GSM818684", "GSM818685" ], "type": "protocol", "id": "GDS4869_33" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4869", "version": 1.0, "instances": "27", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4869.tab", "compression": "gz" } ], [ [ "GDS487.tab" ], { "title": "Cardiomyopathy, severe dilated", "description": "Examination of ventricles of 10 week mice overexpressing dominant-negative (dn) small GTP binding protein p21ras. dn-p21ras mice show severe cardiac dilation and decreased contractility. p21ras implicated in hypertrophic response of cardiomyocytes.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE760", "order": "none", "update_date": "Dec 02 2003", "subsets": [ { "dataset_id": "GDS487", "description": "dn-p21ras", "sample_id": [ "GSM11752", "GSM11753", "GSM11754" ], "type": "genotype/variation", "id": "GDS487_1" }, { "dataset_id": "GDS487", "description": "control", "sample_id": [ "GSM2334", "GSM2335", "GSM2336" ], "type": "genotype/variation", "id": "GDS487_2" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS487", "version": 1.0, "instances": "6", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS487.tab", "compression": "gz" } ], [ [ "GDS4870.tab" ], { "title": "An in vitro primordial germ cell specification system: time course", "description": "Analysis of Wnt3+/+ and Wnt3-/- embryonic stem cell-induced, pluripotent epiblast-like cells stimulated with cytokines (BMP4, Wnt3a, or BMP4+Wnt3a) for up to 36 hrs to induce primordial germ cells (PGCs). Results provide insight into molecular mechanisms by which BMP4/WNT3 signaling specifies PGCs.", "type": "Expression profiling by array", "pubmed_id": "24331926", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE49689", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4870", "description": "Wnt3-/-", "sample_id": [ "GSM1204939", "GSM1204940", "GSM1204941", "GSM1204942", "GSM1204932", "GSM1204933", "GSM1204934", "GSM1204935", "GSM1204925", "GSM1204926", "GSM1204927", "GSM1204928", "GSM1204921" ], "type": "genotype/variation", "id": "GDS4870_1" }, { "dataset_id": "GDS4870", "description": "Wnt3+/+", "sample_id": [ "GSM1204936", "GSM1204937", "GSM1204938", "GSM1204929", "GSM1204930", "GSM1204931", "GSM1204922", "GSM1204923", "GSM1204924", "GSM1204920" ], "type": "genotype/variation", "id": "GDS4870_2" }, { "dataset_id": "GDS4870", "description": "control", "sample_id": [ "GSM1204920", "GSM1204921", "GSM1204939", "GSM1204932", "GSM1204925", "GSM1204936", "GSM1204929", "GSM1204922" ], "type": "protocol", "id": "GDS4870_3" }, { "dataset_id": "GDS4870", "description": "BMP4 stimulation", "sample_id": [ "GSM1204940", "GSM1204933", "GSM1204926", "GSM1204937", "GSM1204930", "GSM1204923" ], "type": "protocol", "id": "GDS4870_4" }, { "dataset_id": "GDS4870", "description": "Wnt3a stimulation", "sample_id": [ "GSM1204942", "GSM1204935", "GSM1204928", "GSM1204938", "GSM1204931", "GSM1204924" ], "type": "protocol", "id": "GDS4870_5" }, { "dataset_id": "GDS4870", "description": "BMP4 + Wnt3a stimulation", "sample_id": [ "GSM1204941", "GSM1204934", "GSM1204927" ], "type": "protocol", "id": "GDS4870_6" }, { "dataset_id": "GDS4870", "description": "0 hour", "sample_id": [ "GSM1204920", "GSM1204921" ], "type": "time", "id": "GDS4870_7" }, { "dataset_id": "GDS4870", "description": "12 hours", "sample_id": [ "GSM1204922", "GSM1204923", "GSM1204924", "GSM1204925", "GSM1204926", "GSM1204927", "GSM1204928" ], "type": "time", "id": "GDS4870_8" }, { "dataset_id": "GDS4870", "description": "24 hours", "sample_id": [ "GSM1204929", "GSM1204930", "GSM1204931", "GSM1204932", "GSM1204933", "GSM1204934", "GSM1204935" ], "type": "time", "id": "GDS4870_9" }, { "dataset_id": "GDS4870", "description": "36 hours", "sample_id": [ "GSM1204936", "GSM1204937", "GSM1204938", "GSM1204939", "GSM1204940", "GSM1204941", "GSM1204942" ], "type": "time", "id": "GDS4870_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4870", "version": 1.0, "instances": "23", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4870.tab", "compression": "gz" } ], [ [ "GDS4871.tab" ], { "title": "Donor lymphocyte infusion effect on bone marrow-infiltrating CD3+ T cells of patients with relapsed chronic myelogenous leukemia", "description": "Analysis of marrow-infiltrating CD3+ T cells isolated from relapsed chronic myelogenous leukemia (CML) patients following donor lymphocyte infusion (DLI) therapy. Four patients were DLI-responsive, two were DLI-nonresponsive. Results provide mechanistic insights into DLI response in relapsed CML.", "type": "Expression profiling by array", "pubmed_id": "24357730", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE49067", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4871", "description": "control", "sample_id": [ "GSM1193262", "GSM1193264", "GSM1193266", "GSM1193268", "GSM1193270", "GSM1193272" ], "type": "protocol", "id": "GDS4871_1" }, { "dataset_id": "GDS4871", "description": "donor lymphocyte infusion", "sample_id": [ "GSM1193263", "GSM1193265", "GSM1193267", "GSM1193269", "GSM1193271", "GSM1193273" ], "type": "protocol", "id": "GDS4871_2" }, { "dataset_id": "GDS4871", "description": "responder", "sample_id": [ "GSM1193262", "GSM1193263", "GSM1193264", "GSM1193265", "GSM1193266", "GSM1193267", "GSM1193268", "GSM1193269" ], "type": "individual", "id": "GDS4871_3" }, { "dataset_id": "GDS4871", "description": "nonresponder", "sample_id": [ "GSM1193270", "GSM1193271", "GSM1193272", "GSM1193273" ], "type": "individual", "id": "GDS4871_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4871", "version": 1.0, "instances": "12", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4871.tab", "compression": "gz" } ], [ [ "GDS4872.tab" ], { "title": "Fasting effect on vanin-1 depleted liver", "description": "Analysis of liver from vanin-1 KOs fasted for 24 hrs. Vanin-1 is highly expressed in liver compared to other tissues. In the fasted state, liver switches to fatty acid oxidation and glucose production. Results provide insight into the role of vanin-1 in hepatic lipid metabolism during starvation.", "type": "Expression profiling by array", "pubmed_id": "24751833", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE51712", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4872", "description": "wild type", "sample_id": [ "GSM1250989", "GSM1250990", "GSM1250991", "GSM1250992", "GSM1250997", "GSM1250998", "GSM1250999", "GSM1251000" ], "type": "genotype/variation", "id": "GDS4872_1" }, { "dataset_id": "GDS4872", "description": "vanin-1 knockout", "sample_id": [ "GSM1250993", "GSM1250994", "GSM1250995", "GSM1250996", "GSM1251001", "GSM1251002", "GSM1251003", "GSM1251004" ], "type": "genotype/variation", "id": "GDS4872_2" }, { "dataset_id": "GDS4872", "description": "fasted", "sample_id": [ "GSM1250989", "GSM1250990", "GSM1250991", "GSM1250992", "GSM1250993", "GSM1250994", "GSM1250995", "GSM1250996" ], "type": "protocol", "id": "GDS4872_3" }, { "dataset_id": "GDS4872", "description": "fed", "sample_id": [ "GSM1250997", "GSM1250998", "GSM1250999", "GSM1251000", "GSM1251001", "GSM1251002", "GSM1251003", "GSM1251004" ], "type": "protocol", "id": "GDS4872_4" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4872", "version": 1.0, "instances": "16", "variables": 25182, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4872.tab", "compression": "gz" } ], [ [ "GDS4873.tab" ], { "title": "Hepatoma cell line overexpressing human Sar1 components of the coat protein complex II transport machinery", "description": "Analysis of McArdle-RH7777 hepatoma cell lines overexpressing human SAR1A, SAR1B, or a constitutively active mutant SAR1B that cannot hydrolyze GTP to support coat protein complex II (COPII) vesicle assembly. Results provide insight into roles of the SAR1 isoforms in the COPII transport machinery.", "type": "Expression profiling by array", "pubmed_id": "24338480", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE52969", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4873", "description": "control", "sample_id": [ "GSM1279591", "GSM1279592", "GSM1279593", "GSM1279594", "GSM1279595" ], "type": "genotype/variation", "id": "GDS4873_1" }, { "dataset_id": "GDS4873", "description": "human SAR1B overexpression", "sample_id": [ "GSM1279596", "GSM1279597", "GSM1279598", "GSM1279599", "GSM1279600", "GSM1279601", "GSM1279602", "GSM1279603" ], "type": "genotype/variation", "id": "GDS4873_2" }, { "dataset_id": "GDS4873", "description": "human SAR1A overexpression", "sample_id": [ "GSM1279612", "GSM1279613", "GSM1279614", "GSM1279615" ], "type": "genotype/variation", "id": "GDS4873_3" }, { "dataset_id": "GDS4873", "description": "mutant human SAR1B overexpression", "sample_id": [ "GSM1279604", "GSM1279605", "GSM1279606", "GSM1279607", "GSM1279608", "GSM1279609", "GSM1279610", "GSM1279611" ], "type": "genotype/variation", "id": "GDS4873_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4873", "version": 1.0, "instances": "25", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4873.tab", "compression": "gz" } ], [ [ "GDS4874.tab" ], { "title": "IQGAP2 knockout model of hepatocellular carcinoma: time course", "description": "Analysis of liver from IQ-motif containing GTPase-activating protein 2 (IQGAP2) KOs at 6- and 24-months of age. IQGAP2 is a member of a multidomain scaffolding protein family that also includes IQGAP1 and IQGAP3. Results provide insight into a potential tumor suppressive role for IQGAP2 in liver.", "type": "Expression profiling by array", "pubmed_id": "23951254", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46646", "order": "none", "update_date": "Feb 26 2016", "subsets": [ { "dataset_id": "GDS4874", "description": "wild type control", "sample_id": [ "GSM1133582", "GSM1133583", "GSM1133584", "GSM1133585", "GSM1133586", "GSM1133587" ], "type": "genotype/variation", "id": "GDS4874_1" }, { "dataset_id": "GDS4874", "description": "IQGAP2 knockout", "sample_id": [ "GSM1133576", "GSM1133577", "GSM1133578", "GSM1133579", "GSM1133580", "GSM1133581" ], "type": "genotype/variation", "id": "GDS4874_2" }, { "dataset_id": "GDS4874", "description": "6 months", "sample_id": [ "GSM1133582", "GSM1133583", "GSM1133584", "GSM1133576", "GSM1133577", "GSM1133578" ], "type": "age", "id": "GDS4874_3" }, { "dataset_id": "GDS4874", "description": "24 months", "sample_id": [ "GSM1133579", "GSM1133580", "GSM1133581", "GSM1133585", "GSM1133586", "GSM1133587" ], "type": "age", "id": "GDS4874_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4874", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4874.tab", "compression": "gz" } ], [ [ "GDS4875.tab" ], { "title": "Proliferator-activated receptor gamma agonist rosiglitazone effect on extravillous cytotrophoblasts in vitro", "description": "Analysis of EVCTs isolated from first trimester placenta and treated with rosiglitazone, a PPAR\u03b3 agonist. EVCT invasion into the uterus is critical for placental and fetal development. Results provide insight into the molecular basis of PPAR\u03b3-mediated regulation of EVCT invasion in vitro.", "type": "Expression profiling by array", "pubmed_id": "24265769", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE28426", "order": "none", "update_date": "Mar 03 2016", "subsets": [ { "dataset_id": "GDS4875", "description": "control", "sample_id": [ "GSM702513", "GSM702514", "GSM702515", "GSM702516", "GSM702517" ], "type": "agent", "id": "GDS4875_1" }, { "dataset_id": "GDS4875", "description": "rosiglitazone", "sample_id": [ "GSM702518", "GSM702519", "GSM702520", "GSM702521", "GSM702522" ], "type": "agent", "id": "GDS4875_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4875", "version": 1.0, "instances": "10", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4875.tab", "compression": "gz" } ], [ [ "GDS4876.tab" ], { "title": "Pulmonary surfactant protein-C deficiency effect on alveolar type II epithelial cell", "description": "Analysis of alveolar type II epithelial cells (AEC II) from mutants deficient for surfactant protein-C (SP-C). SP-C is a surfactant-associated protein secreted by AEC II cells. Results provide insight into the basis of the progressive lung inflammation and remodeling observed in SP-C null mutants.", "type": "Expression profiling by array", "pubmed_id": "23795648", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE35989", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4876", "description": "wild type", "sample_id": [ "GSM878608", "GSM878609" ], "type": "genotype/variation", "id": "GDS4876_1" }, { "dataset_id": "GDS4876", "description": "SP-C null", "sample_id": [ "GSM878582", "GSM878583" ], "type": "genotype/variation", "id": "GDS4876_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4876", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4876.tab", "compression": "gz" } ], [ [ "GDS4877.tab" ], { "title": "Ovarian cancer cell line response to the anticancer drug NSC319726", "description": "Analysis of TOV112D ovarian cancer cells following treatment with NSC319726, a member of the thiosemicarbzone family of metal ion chelators. NSC319726 inhibits the growth of mutant p53 cells. Results provide insight into the mechanism of action of NSC319726.", "type": "Expression profiling by array", "pubmed_id": "22624712", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35972", "order": "none", "update_date": "Apr 29 2014", "subsets": [ { "dataset_id": "GDS4877", "description": "control", "sample_id": [ "GSM878200", "GSM878201", "GSM878202" ], "type": "agent", "id": "GDS4877_1" }, { "dataset_id": "GDS4877", "description": "NSC319726", "sample_id": [ "GSM878203", "GSM878204", "GSM878205" ], "type": "agent", "id": "GDS4877_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4877", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4877.tab", "compression": "gz" } ], [ [ "GDS4878.tab" ], { "title": "c-Jun N-terminal kinase-1 deletion effect on bile duct ligation model of liver fibrosis: time course", "description": "Analysis of liver from c-Jun N-terminal kinase-1 null (Jnk1-/-) and hepatocyte-specific, JNK1 null (Jnk1\u0394hepa) males subjected to BDL for up to 28 days to induce liver fibrosis. Liver injury activates Jnk members of the MAPK family. Results provide insight into the role of Jnk1 in liver fibrosis.", "type": "Expression profiling by array", "pubmed_id": "24037431", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE40041", "order": "none", "update_date": "Mar 04 2016", "subsets": [ { "dataset_id": "GDS4878", "description": "control (JNK1f/f)", "sample_id": [ "GSM984168", "GSM984169", "GSM984170", "GSM984177", "GSM984178", "GSM984179", "GSM984180", "GSM984181", "GSM984182", "GSM984189", "GSM984190", "GSM984191" ], "type": "genotype/variation", "id": "GDS4878_1" }, { "dataset_id": "GDS4878", "description": "Jnk1 null (Jnk1-/-)", "sample_id": [ "GSM984171", "GSM984172", "GSM984173", "GSM984183", "GSM984184", "GSM984185" ], "type": "genotype/variation", "id": "GDS4878_2" }, { "dataset_id": "GDS4878", "description": "hepatocyte-specific Jnk1 null (Jnk1\u0394hepa)", "sample_id": [ "GSM984174", "GSM984175", "GSM984176", "GSM984186", "GSM984187", "GSM984188" ], "type": "genotype/variation", "id": "GDS4878_3" }, { "dataset_id": "GDS4878", "description": "sham control", "sample_id": [ "GSM984191", "GSM984190", "GSM984189", "GSM984179", "GSM984178", "GSM984177" ], "type": "protocol", "id": "GDS4878_4" }, { "dataset_id": "GDS4878", "description": "bile duct ligation", "sample_id": [ "GSM984188", "GSM984187", "GSM984186", "GSM984176", "GSM984175", "GSM984174", "GSM984182", "GSM984181", "GSM984180", "GSM984170", "GSM984169", "GSM984168", "GSM984185", "GSM984184", "GSM984183", "GSM984173", "GSM984172", "GSM984171" ], "type": "protocol", "id": "GDS4878_5" }, { "dataset_id": "GDS4878", "description": "48 hours", "sample_id": [ "GSM984185", "GSM984184", "GSM984183", "GSM984182", "GSM984181", "GSM984180", "GSM984191", "GSM984190", "GSM984189", "GSM984188", "GSM984187", "GSM984186" ], "type": "time", "id": "GDS4878_6" }, { "dataset_id": "GDS4878", "description": "28 days", "sample_id": [ "GSM984173", "GSM984172", "GSM984171", "GSM984170", "GSM984169", "GSM984168", "GSM984179", "GSM984178", "GSM984177", "GSM984176", "GSM984175", "GSM984174" ], "type": "time", "id": "GDS4878_7" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4878", "version": 1.0, "instances": "24", "variables": 25183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4878.tab", "compression": "gz" } ], [ [ "GDS4879.tab" ], { "title": "Chronic high-level alcohol consumption effect on brain: post-mortem hippocampus", "description": "Analysis of post-mortem hippocampus of chronic alcoholics (CAs). Chronic high-level alcohol consumption leads to decreased white matter and inhibition of neurogenesis. Results provide insight into molecular mechanisms that may play a role in the risk for alcoholism.", "type": "Expression profiling by array", "pubmed_id": "23981442", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "39", "value_type": "transformed count", "reference_series": "GSE44456", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4879", "description": "female", "sample_id": [ "GSM1085677", "GSM1085681", "GSM1085685", "GSM1085689", "GSM1085695", "GSM1085698", "GSM1085673", "GSM1085679", "GSM1085694", "GSM1085696", "GSM1085699", "GSM1085701" ], "type": "gender", "id": "GDS4879_1" }, { "dataset_id": "GDS4879", "description": "male", "sample_id": [ "GSM1085666", "GSM1085668", "GSM1085670", "GSM1085671", "GSM1085674", "GSM1085678", "GSM1085680", "GSM1085682", "GSM1085683", "GSM1085684", "GSM1085687", "GSM1085691", "GSM1085697", "GSM1085700", "GSM1085665", "GSM1085667", "GSM1085669", "GSM1085672", "GSM1085675", "GSM1085676", "GSM1085686", "GSM1085688", "GSM1085690", "GSM1085692", "GSM1085693", "GSM1085702", "GSM1085703" ], "type": "gender", "id": "GDS4879_2" }, { "dataset_id": "GDS4879", "description": "alcoholism", "sample_id": [ "GSM1085677", "GSM1085681", "GSM1085685", "GSM1085689", "GSM1085695", "GSM1085698", "GSM1085666", "GSM1085668", "GSM1085670", "GSM1085671", "GSM1085674", "GSM1085678", "GSM1085680", "GSM1085682", "GSM1085683", "GSM1085684", "GSM1085687", "GSM1085691", "GSM1085697", "GSM1085700" ], "type": "disease state", "id": "GDS4879_3" }, { "dataset_id": "GDS4879", "description": "control", "sample_id": [ "GSM1085673", "GSM1085679", "GSM1085694", "GSM1085696", "GSM1085699", "GSM1085701", "GSM1085665", "GSM1085667", "GSM1085669", "GSM1085672", "GSM1085675", "GSM1085676", "GSM1085686", "GSM1085688", "GSM1085690", "GSM1085692", "GSM1085693", "GSM1085702", "GSM1085703" ], "type": "disease state", "id": "GDS4879_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4879", "version": 1.0, "instances": "39", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4879.tab", "compression": "gz" } ], [ [ "GDS488.tab" ], { "title": "Myocardial infarction time course", "description": "Temporal analysis of acute myocardial infarction (AMI) induced by left coronary artery ligation. Left ventricle above and below left anterior descending (LAD) artery examined at 1 hour to 8 week time points.", "type": "Expression profiling by array", "pubmed_id": "14679301", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "59", "value_type": "count", "reference_series": "GSE775", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS488", "description": "myocardial infarction", "sample_id": [ "GSM12345", "GSM12346", "GSM12347", "GSM12348", "GSM12349", "GSM12350", "GSM12351", "GSM12352", "GSM12353", "GSM12354", "GSM12355", "GSM12356", "GSM12357", "GSM12358", "GSM12359", "GSM12360", "GSM12361", "GSM12362", "GSM12363", "GSM12364", "GSM12365", "GSM12366", "GSM12367", "GSM12368", "GSM12369", "GSM12370", "GSM12371", "GSM12372", "GSM12373", "GSM12374", "GSM12375", "GSM12376", "GSM12377", "GSM12378", "GSM12379", "GSM12380" ], "type": "disease state", "id": "GDS488_1" }, { "dataset_id": "GDS488", "description": "sham", "sample_id": [ "GSM12322", "GSM12323", "GSM12324", "GSM12325", "GSM12326", "GSM12327", "GSM12328", "GSM12329", "GSM12330", "GSM12331", "GSM12332", "GSM12333", "GSM12334", "GSM12335", "GSM12336", "GSM12337", "GSM12338", "GSM12339", "GSM12340", "GSM12341", "GSM12342", "GSM12343", "GSM12344" ], "type": "disease state", "id": "GDS488_2" }, { "dataset_id": "GDS488", "description": "below LAD artery", "sample_id": [ "GSM12345", "GSM12346", "GSM12347", "GSM12348", "GSM12349", "GSM12350", "GSM12351", "GSM12352", "GSM12353", "GSM12354", "GSM12355", "GSM12356", "GSM12357", "GSM12358", "GSM12359", "GSM12360", "GSM12361", "GSM12362", "GSM12340", "GSM12341", "GSM12342", "GSM12343", "GSM12344" ], "type": "tissue", "id": "GDS488_3" }, { "dataset_id": "GDS488", "description": "above LAD artery", "sample_id": [ "GSM12363", "GSM12364", "GSM12365", "GSM12366", "GSM12367", "GSM12368", "GSM12369", "GSM12370", "GSM12371", "GSM12372", "GSM12373", "GSM12374", "GSM12375", "GSM12376", "GSM12377", "GSM12378", "GSM12379", "GSM12380", "GSM12322", "GSM12323", "GSM12324", "GSM12325", "GSM12326", "GSM12327", "GSM12328", "GSM12329", "GSM12330", "GSM12331", "GSM12332", "GSM12333", "GSM12334", "GSM12335", "GSM12336", "GSM12337", "GSM12338", "GSM12339" ], "type": "tissue", "id": "GDS488_4" }, { "dataset_id": "GDS488", "description": "1 hour", "sample_id": [ "GSM12323", "GSM12322", "GSM12347", "GSM12340", "GSM12324", "GSM12365", "GSM12363", "GSM12364", "GSM12345", "GSM12346" ], "type": "time", "id": "GDS488_5" }, { "dataset_id": "GDS488", "description": "4 hour", "sample_id": [ "GSM12336", "GSM12334", "GSM12375", "GSM12359", "GSM12357", "GSM12377", "GSM12358", "GSM12335", "GSM12344", "GSM12376" ], "type": "time", "id": "GDS488_6" }, { "dataset_id": "GDS488", "description": "24 hour", "sample_id": [ "GSM12370", "GSM12329", "GSM12351", "GSM12352", "GSM12369", "GSM12353", "GSM12328", "GSM12371", "GSM12330", "GSM12342" ], "type": "time", "id": "GDS488_7" }, { "dataset_id": "GDS488", "description": "48 hour", "sample_id": [ "GSM12331", "GSM12332", "GSM12373", "GSM12372", "GSM12374", "GSM12343", "GSM12333", "GSM12354", "GSM12356", "GSM12355" ], "type": "time", "id": "GDS488_8" }, { "dataset_id": "GDS488", "description": "1 week", "sample_id": [ "GSM12327", "GSM12350", "GSM12326", "GSM12341", "GSM12348", "GSM12367", "GSM12368", "GSM12325", "GSM12366", "GSM12349" ], "type": "time", "id": "GDS488_9" }, { "dataset_id": "GDS488", "description": "8 week", "sample_id": [ "GSM12362", "GSM12338", "GSM12337", "GSM12378", "GSM12380", "GSM12379", "GSM12339", "GSM12361", "GSM12360" ], "type": "time", "id": "GDS488_10" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS488", "version": 1.0, "instances": "59", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS488.tab", "compression": "gz" } ], [ [ "GDS4880.tab" ], { "title": "Treatment-naive, chronic hepatitis C virus-infected patients: CD4+ and CD8+ T-lymphocytes", "description": "Analysis of antigen-specific CD4+ and CD8+ T-cells from treatment-naive, chronic hepatitis C virus (CHC) patients with high or low viral loads. Results provide insight into molecular mechanisms underlying functional impairment differences between CD4+ and CD8+ T-cells during CHC infection.", "type": "Expression profiling by array", "pubmed_id": "24130824", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE49954", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4880", "description": "healthy donor", "sample_id": [ "GSM1210755", "GSM1210740", "GSM1210754", "GSM1210739", "GSM1210758", "GSM1210743", "GSM1210757", "GSM1210742", "GSM1210756", "GSM1210741" ], "type": "disease state", "id": "GDS4880_1" }, { "dataset_id": "GDS4880", "description": "chronic HCV infection-low viral load", "sample_id": [ "GSM1210760", "GSM1210745", "GSM1210768", "GSM1210753", "GSM1210767", "GSM1210752", "GSM1210766", "GSM1210751", "GSM1210765", "GSM1210750" ], "type": "disease state", "id": "GDS4880_2" }, { "dataset_id": "GDS4880", "description": "chronic HCV infection-high viral load", "sample_id": [ "GSM1210761", "GSM1210746", "GSM1210759", "GSM1210744", "GSM1210764", "GSM1210749", "GSM1210763", "GSM1210748", "GSM1210762", "GSM1210747" ], "type": "disease state", "id": "GDS4880_3" }, { "dataset_id": "GDS4880", "description": "CD4+ T-cells", "sample_id": [ "GSM1210739", "GSM1210740", "GSM1210741", "GSM1210742", "GSM1210743", "GSM1210744", "GSM1210745", "GSM1210746", "GSM1210747", "GSM1210748", "GSM1210749", "GSM1210750", "GSM1210751", "GSM1210752", "GSM1210753" ], "type": "cell type", "id": "GDS4880_4" }, { "dataset_id": "GDS4880", "description": "CD8+ T-cells", "sample_id": [ "GSM1210754", "GSM1210755", "GSM1210756", "GSM1210757", "GSM1210758", "GSM1210759", "GSM1210760", "GSM1210761", "GSM1210762", "GSM1210763", "GSM1210764", "GSM1210765", "GSM1210766", "GSM1210767", "GSM1210768" ], "type": "cell type", "id": "GDS4880_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4880", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4880.tab", "compression": "gz" } ], [ [ "GDS4881.tab" ], { "title": "Postbariatric, morbidly obese patients with nonalcoholic fatty liver disease: liver biopsies", "description": "Analysis of liver from morbidly obese patient representing nonalcoholic fatty liver disease (NAFLD) subtypes steatosis and nonalcoholic steatohepatitis (NASH), post-bariatric surgery. Results provide insight into molecular basis of the NAFLD liver phenotypes and into postbariatric molecular changes.", "type": "Expression profiling by array", "pubmed_id": "23931760", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "73", "value_type": "transformed count", "reference_series": "GSE48452", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4881", "description": "healthy control", "sample_id": [ "GSM1178970", "GSM1178971", "GSM1178972", "GSM1178973", "GSM1178974", "GSM1178977", "GSM1178978", "GSM1178979", "GSM1178998", "GSM1179010", "GSM1179018", "GSM1179024", "GSM1179009", "GSM1179031" ], "type": "disease state", "id": "GDS4881_1" }, { "dataset_id": "GDS4881", "description": "healthy obese", "sample_id": [ "GSM1178976", "GSM1178981", "GSM1178982", "GSM1178983", "GSM1178984", "GSM1178985", "GSM1178990", "GSM1178991", "GSM1178992", "GSM1178994", "GSM1178997", "GSM1179000", "GSM1179005", "GSM1179007", "GSM1179012", "GSM1179013", "GSM1179014", "GSM1179016", "GSM1179019", "GSM1179020", "GSM1179022", "GSM1179030", "GSM1179032", "GSM1179038", "GSM1179028", "GSM1179041", "GSM1179042" ], "type": "disease state", "id": "GDS4881_2" }, { "dataset_id": "GDS4881", "description": "NAFLD: nonalcoholic steatohepatitis", "sample_id": [ "GSM1178975", "GSM1178980", "GSM1178987", "GSM1178995", "GSM1178996", "GSM1179001", "GSM1179002", "GSM1179003", "GSM1179004", "GSM1179006", "GSM1179008", "GSM1179015", "GSM1179017", "GSM1179026", "GSM1179033", "GSM1179035", "GSM1179036", "GSM1179039" ], "type": "disease state", "id": "GDS4881_3" }, { "dataset_id": "GDS4881", "description": "NAFLD: steatosis", "sample_id": [ "GSM1178986", "GSM1178988", "GSM1178989", "GSM1178999", "GSM1179023", "GSM1179029", "GSM1179034", "GSM1179037", "GSM1178993", "GSM1179011", "GSM1179021", "GSM1179027", "GSM1179025", "GSM1179040" ], "type": "disease state", "id": "GDS4881_4" }, { "dataset_id": "GDS4881", "description": "before bariatric surgery", "sample_id": [ "GSM1178971", "GSM1178979", "GSM1178984", "GSM1178990", "GSM1178991", "GSM1178994", "GSM1178987", "GSM1179003", "GSM1179004", "GSM1178986", "GSM1178989", "GSM1178999", "GSM1178993", "GSM1179021", "GSM1179027", "GSM1179025" ], "type": "protocol", "id": "GDS4881_5" }, { "dataset_id": "GDS4881", "description": "after bariatric surgery", "sample_id": [ "GSM1179009", "GSM1179031", "GSM1178997", "GSM1179000", "GSM1179013", "GSM1179014", "GSM1179019", "GSM1179020", "GSM1179022", "GSM1179032", "GSM1179028", "GSM1179041", "GSM1179042", "GSM1179039", "GSM1179023", "GSM1179029", "GSM1179034", "GSM1179011", "GSM1179040" ], "type": "protocol", "id": "GDS4881_6" }, { "dataset_id": "GDS4881", "description": "n/a", "sample_id": [ "GSM1178970", "GSM1178972", "GSM1178973", "GSM1178974", "GSM1178977", "GSM1178978", "GSM1178998", "GSM1179010", "GSM1179018", "GSM1179024", "GSM1178976", "GSM1178981", "GSM1178982", "GSM1178983", "GSM1178985", "GSM1178992", "GSM1179005", "GSM1179007", "GSM1179012", "GSM1179016", "GSM1179030", "GSM1179038", "GSM1178975", "GSM1178980", "GSM1178995", "GSM1178996", "GSM1179001", "GSM1179002", "GSM1179006", "GSM1179008", "GSM1179015", "GSM1179017", "GSM1179026", "GSM1179033", "GSM1179035", "GSM1179036", "GSM1178988", "GSM1179037" ], "type": "protocol", "id": "GDS4881_7" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS4881", "version": 1.0, "instances": "73", "variables": 26599, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4881.tab", "compression": "gz" } ], [ [ "GDS4882.tab" ], { "title": "Hepatocellular carcinoma: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells from hepatocellular carcinoma (HCC), pancreatic carcinoma, and gastric carcinoma patients. Results provide insight into a blood-based gene signature for detection of early-stage HCC.", "type": "Expression profiling by array", "pubmed_id": "24332572", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE49515", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4882", "description": "gastric cancer", "sample_id": [ "GSM1200291", "GSM1200292", "GSM1200293" ], "type": "disease state", "id": "GDS4882_1" }, { "dataset_id": "GDS4882", "description": "hepatocellular carcinoma", "sample_id": [ "GSM1200294", "GSM1200295", "GSM1200296", "GSM1200297", "GSM1200298", "GSM1200299", "GSM1200300", "GSM1200301", "GSM1200302", "GSM1200303" ], "type": "disease state", "id": "GDS4882_2" }, { "dataset_id": "GDS4882", "description": "normal", "sample_id": [ "GSM1200304", "GSM1200305", "GSM1200306", "GSM1200307", "GSM1200308", "GSM1200309", "GSM1200310", "GSM1200311", "GSM1200312", "GSM1200313" ], "type": "disease state", "id": "GDS4882_3" }, { "dataset_id": "GDS4882", "description": "pancreatic cancer", "sample_id": [ "GSM1200314", "GSM1200315", "GSM1200316" ], "type": "disease state", "id": "GDS4882_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4882", "version": 1.0, "instances": "26", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4882.tab", "compression": "gz" } ], [ [ "GDS4883.tab" ], { "title": "Liver response to a metformin supplemented high fat diet deficient in methionine and choline", "description": "Analysis of livers of animals fed a methionine- and choline- deficient, high fat diet (MCD+HF) containing metformin. MCD+HF models non-alcoholic steatohepatitis (NASH). Results provide insight into the feasibility of using metformin, an anti-diabetic drug, to treat NASH without underlying diabetes.", "type": "Expression profiling by array", "pubmed_id": "23028442", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE35961", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4883", "description": "normal diet", "sample_id": [ "GSM878116", "GSM878117", "GSM878118", "GSM878119" ], "type": "protocol", "id": "GDS4883_1" }, { "dataset_id": "GDS4883", "description": "MCD+HF diet", "sample_id": [ "GSM878120", "GSM878121", "GSM878122", "GSM878123" ], "type": "protocol", "id": "GDS4883_2" }, { "dataset_id": "GDS4883", "description": "MCD+HF diet with metformin", "sample_id": [ "GSM878124", "GSM878125", "GSM878126", "GSM878127" ], "type": "protocol", "id": "GDS4883_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4883", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4883.tab", "compression": "gz" } ], [ [ "GDS4884.tab" ], { "title": "Lysyl oxidase-like 2 depletion effect on MDA-MB-231 cells", "description": "Analysis of MDA-MB-231 cells depleted for Lysyl oxidase-like 2 (LOXL2). LOXL2 is a member of the Lysyl oxidase family of copper-containing enzymes that catalyze the oxidative deamination of epsilon-amino groups in lysines. Results provide insight into the role of LOXL2 in transcriptional regulation.", "type": "Expression profiling by array", "pubmed_id": "22483618", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE35600", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4884", "description": "control", "sample_id": [ "GSM871402", "GSM871403", "GSM871404" ], "type": "protocol", "id": "GDS4884_1" }, { "dataset_id": "GDS4884", "description": "LOXL2 depletion", "sample_id": [ "GSM871399", "GSM871400", "GSM871401" ], "type": "protocol", "id": "GDS4884_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4884", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4884.tab", "compression": "gz" } ], [ [ "GDS4885.tab" ], { "title": "Kruppel-like zinc finger protein ZNF217 overexpression effect on breast cancer cell line", "description": "Analysis of MDA-MB-231 cells overexpressing ZNF217. ZNF217 is a Kruppel-like zinc finger protein that localizes to the nucleus. Results provide insight into the role of ZNF217 in the progression of breast cancer.", "type": "Expression profiling by array", "pubmed_id": "22593193", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE35511", "order": "none", "update_date": "May 09 2014", "subsets": [ { "dataset_id": "GDS4885", "description": "control", "sample_id": [ "GSM870010", "GSM870012" ], "type": "protocol", "id": "GDS4885_1" }, { "dataset_id": "GDS4885", "description": "ZNF217 overexpression", "sample_id": [ "GSM870011", "GSM870013" ], "type": "protocol", "id": "GDS4885_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4885", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4885.tab", "compression": "gz" } ], [ [ "GDS4886.tab" ], { "title": "Histone deacetylase 3 deficiency effect on the heart", "description": "Analysis of hearts of 6 week old mutants deleted for histone deacetylase 3 (HDAC3). HDAC3 deletion occurred 7 days after birth. These MCH3-KO mutants are viable on normal chow but a high fat diet is lethal. The results underscore the impact gene-diet interactions may have on cardiovascular health.", "type": "Expression profiling by array", "pubmed_id": "21808063", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE31251", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4886", "description": "wild type", "sample_id": [ "GSM774636", "GSM774637", "GSM774638", "GSM774639" ], "type": "genotype/variation", "id": "GDS4886_1" }, { "dataset_id": "GDS4886", "description": "HDAC3 null", "sample_id": [ "GSM774640", "GSM774646", "GSM774647", "GSM774649" ], "type": "genotype/variation", "id": "GDS4886_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4886", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4886.tab", "compression": "gz" } ], [ [ "GDS4887.tab" ], { "title": "IL-28B polymorphism effect on hepatitis C virus-related hepatocellular carcinoma: resected liver", "description": "Analysis of resected liver from hepatocellular carcinoma (HCC) patients with chronic hepatitis C (CHC) representing interleukin-28B (IL-28B) SNP rs8099917 TT genotype and TG/GG genotype. Results provide insight into the association between IL-28B genotype and the outcome of HCC patients.", "type": "Expression profiling by array", "pubmed_id": "23426277", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE41804", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4887", "description": "major [rs8099917 TT]", "sample_id": [ "GSM1024521", "GSM1024522", "GSM1024523", "GSM1024524", "GSM1024525", "GSM1024526", "GSM1024527", "GSM1024528", "GSM1024529", "GSM1024530", "GSM1024531", "GSM1024532", "GSM1024533", "GSM1024534", "GSM1024535", "GSM1024536", "GSM1024537", "GSM1024538", "GSM1024539", "GSM1024540" ], "type": "genotype/variation", "id": "GDS4887_1" }, { "dataset_id": "GDS4887", "description": "minor [rs8099917 TG/GG]", "sample_id": [ "GSM1024541", "GSM1024542", "GSM1024543", "GSM1024544", "GSM1024545", "GSM1024546", "GSM1024547", "GSM1024548", "GSM1024549", "GSM1024550", "GSM1024551", "GSM1024552", "GSM1024553", "GSM1024554", "GSM1024555", "GSM1024556", "GSM1024557", "GSM1024558", "GSM1024559", "GSM1024560" ], "type": "genotype/variation", "id": "GDS4887_2" }, { "dataset_id": "GDS4887", "description": "hepatocellular carcinoma tumor", "sample_id": [ "GSM1024521", "GSM1024522", "GSM1024523", "GSM1024524", "GSM1024525", "GSM1024526", "GSM1024527", "GSM1024528", "GSM1024529", "GSM1024530", "GSM1024541", "GSM1024542", "GSM1024543", "GSM1024544", "GSM1024545", "GSM1024546", "GSM1024547", "GSM1024548", "GSM1024549", "GSM1024550" ], "type": "tissue", "id": "GDS4887_3" }, { "dataset_id": "GDS4887", "description": "non-tumor", "sample_id": [ "GSM1024531", "GSM1024532", "GSM1024533", "GSM1024534", "GSM1024535", "GSM1024536", "GSM1024537", "GSM1024538", "GSM1024539", "GSM1024540", "GSM1024551", "GSM1024552", "GSM1024553", "GSM1024554", "GSM1024555", "GSM1024556", "GSM1024557", "GSM1024558", "GSM1024559", "GSM1024560" ], "type": "tissue", "id": "GDS4887_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4887", "version": 1.0, "instances": "40", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4887.tab", "compression": "gz" } ], [ [ "GDS4888.tab" ], { "title": "Systemic lupus erythematosus patients and yellow fever vaccine-immunized healthy donors: CD4 T+ lymphocytes", "description": "Analysis of CD4+ T cells from SLE patients and YFV-immunized healthy donors. The YFV immunization can be regarded as a real viral infection, based on clinical/serological manifestations. Results provide insight into differences in type I interferon responses in autoimmunity and viral infection.", "type": "Expression profiling by array", "pubmed_id": [ "24391825", "19265543" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE51997", "order": "none", "update_date": "Mar 09 2016", "subsets": [ { "dataset_id": "GDS4888", "description": "SLE 2", "sample_id": [ "GSM1256958" ], "type": "individual", "id": "GDS4888_1" }, { "dataset_id": "GDS4888", "description": "SLE 4", "sample_id": [ "GSM1256959" ], "type": "individual", "id": "GDS4888_2" }, { "dataset_id": "GDS4888", "description": "SLE 7", "sample_id": [ "GSM1256960" ], "type": "individual", "id": "GDS4888_3" }, { "dataset_id": "GDS4888", "description": "SLE 8", "sample_id": [ "GSM1256961" ], "type": "individual", "id": "GDS4888_4" }, { "dataset_id": "GDS4888", "description": "SLE 9", "sample_id": [ "GSM1256962" ], "type": "individual", "id": "GDS4888_5" }, { "dataset_id": "GDS4888", "description": "SLE 12", "sample_id": [ "GSM1256963" ], "type": "individual", "id": "GDS4888_6" }, { "dataset_id": "GDS4888", "description": "ND 54", "sample_id": [ "GSM1256972", "GSM1256976" ], "type": "individual", "id": "GDS4888_7" }, { "dataset_id": "GDS4888", "description": "ND 55", "sample_id": [ "GSM1256973", "GSM1256977" ], "type": "individual", "id": "GDS4888_8" }, { "dataset_id": "GDS4888", "description": "ND 56", "sample_id": [ "GSM1256974", "GSM1256978" ], "type": "individual", "id": "GDS4888_9" }, { "dataset_id": "GDS4888", "description": "ND 57", "sample_id": [ "GSM1256975", "GSM1256979" ], "type": "individual", "id": "GDS4888_10" }, { "dataset_id": "GDS4888", "description": "systemic lupus erythematosus", "sample_id": [ "GSM1256963", "GSM1256958", "GSM1256959", "GSM1256960", "GSM1256961", "GSM1256962" ], "type": "disease state", "id": "GDS4888_11" }, { "dataset_id": "GDS4888", "description": "healthy", "sample_id": [ "GSM1256972", "GSM1256973", "GSM1256974", "GSM1256975", "GSM1256976", "GSM1256977", "GSM1256978", "GSM1256979" ], "type": "disease state", "id": "GDS4888_12" }, { "dataset_id": "GDS4888", "description": "not immunized", "sample_id": [ "GSM1256963", "GSM1256958", "GSM1256959", "GSM1256960", "GSM1256961", "GSM1256962" ], "type": "protocol", "id": "GDS4888_13" }, { "dataset_id": "GDS4888", "description": "before YFV immunization", "sample_id": [ "GSM1256972", "GSM1256973", "GSM1256974", "GSM1256975" ], "type": "protocol", "id": "GDS4888_14" }, { "dataset_id": "GDS4888", "description": "after YFV immunization", "sample_id": [ "GSM1256976", "GSM1256977", "GSM1256978", "GSM1256979" ], "type": "protocol", "id": "GDS4888_15" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4888", "version": 1.0, "instances": "14", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4888.tab", "compression": "gz" } ], [ [ "GDS4889.tab" ], { "title": "Systemic lupus erythematosus patients and yellow fever vaccine-immunized healthy donors: CD16- monocytes", "description": "Analysis of CD16- monocytes from SLE patients and YFV-immunized healthy donors. The YFV immunization can be regarded as a real viral infection, based on clinical/serological manifestations. Results provide insight into differences in type I interferon responses in autoimmunity and viral infection.", "type": "Expression profiling by array", "pubmed_id": [ "24391825", "19265543" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE51997", "order": "none", "update_date": "Mar 09 2016", "subsets": [ { "dataset_id": "GDS4889", "description": "SLE 1", "sample_id": [ "GSM1256964" ], "type": "individual", "id": "GDS4889_1" }, { "dataset_id": "GDS4889", "description": "SLE 2", "sample_id": [ "GSM1256965" ], "type": "individual", "id": "GDS4889_2" }, { "dataset_id": "GDS4889", "description": "SLE 3", "sample_id": [ "GSM1256966" ], "type": "individual", "id": "GDS4889_3" }, { "dataset_id": "GDS4889", "description": "SLE 4", "sample_id": [ "GSM1256967" ], "type": "individual", "id": "GDS4889_4" }, { "dataset_id": "GDS4889", "description": "ND 54", "sample_id": [ "GSM1256980", "GSM1256984" ], "type": "individual", "id": "GDS4889_5" }, { "dataset_id": "GDS4889", "description": "ND 55", "sample_id": [ "GSM1256981", "GSM1256985" ], "type": "individual", "id": "GDS4889_6" }, { "dataset_id": "GDS4889", "description": "ND 56", "sample_id": [ "GSM1256982", "GSM1256986" ], "type": "individual", "id": "GDS4889_7" }, { "dataset_id": "GDS4889", "description": "ND 57", "sample_id": [ "GSM1256987", "GSM1256983" ], "type": "individual", "id": "GDS4889_8" }, { "dataset_id": "GDS4889", "description": "systemic lupus erythematosus", "sample_id": [ "GSM1256964", "GSM1256965", "GSM1256966", "GSM1256967" ], "type": "disease state", "id": "GDS4889_9" }, { "dataset_id": "GDS4889", "description": "healthy", "sample_id": [ "GSM1256980", "GSM1256981", "GSM1256982", "GSM1256983", "GSM1256984", "GSM1256985", "GSM1256986", "GSM1256987" ], "type": "disease state", "id": "GDS4889_10" }, { "dataset_id": "GDS4889", "description": "not immunized", "sample_id": [ "GSM1256964", "GSM1256965", "GSM1256966", "GSM1256967" ], "type": "protocol", "id": "GDS4889_11" }, { "dataset_id": "GDS4889", "description": "before YFV immunization", "sample_id": [ "GSM1256980", "GSM1256981", "GSM1256982", "GSM1256983" ], "type": "protocol", "id": "GDS4889_12" }, { "dataset_id": "GDS4889", "description": "after YFV immunization", "sample_id": [ "GSM1256984", "GSM1256985", "GSM1256986", "GSM1256987" ], "type": "protocol", "id": "GDS4889_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4889", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4889.tab", "compression": "gz" } ], [ [ "GDS4890.tab" ], { "title": "Systemic lupus erythematosus patients and yellow fever vaccine-immunized healthy donors: CD16+ monocytes", "description": "Analysis of CD16+ monocytes from SLE patients and YFV-immunized healthy donors. The YFV immunization can be regarded as a real viral infection, based on clinical/serological manifestations. Results provide insight into differences in type I interferon responses in autoimmunity and viral infection.", "type": "Expression profiling by array", "pubmed_id": [ "24391825", "19265543" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE51997", "order": "none", "update_date": "Mar 09 2016", "subsets": [ { "dataset_id": "GDS4890", "description": "SLE 1", "sample_id": [ "GSM1256968" ], "type": "individual", "id": "GDS4890_1" }, { "dataset_id": "GDS4890", "description": "SLE 2", "sample_id": [ "GSM1256969" ], "type": "individual", "id": "GDS4890_2" }, { "dataset_id": "GDS4890", "description": "SLE 3", "sample_id": [ "GSM1256970" ], "type": "individual", "id": "GDS4890_3" }, { "dataset_id": "GDS4890", "description": "SLE 4", "sample_id": [ "GSM1256971" ], "type": "individual", "id": "GDS4890_4" }, { "dataset_id": "GDS4890", "description": "ND 55", "sample_id": [ "GSM1256988", "GSM1256991" ], "type": "individual", "id": "GDS4890_5" }, { "dataset_id": "GDS4890", "description": "ND 56", "sample_id": [ "GSM1256989", "GSM1256992" ], "type": "individual", "id": "GDS4890_6" }, { "dataset_id": "GDS4890", "description": "ND 57", "sample_id": [ "GSM1256993", "GSM1256990" ], "type": "individual", "id": "GDS4890_7" }, { "dataset_id": "GDS4890", "description": "systemic lupus erythematosus", "sample_id": [ "GSM1256968", "GSM1256969", "GSM1256970", "GSM1256971" ], "type": "disease state", "id": "GDS4890_8" }, { "dataset_id": "GDS4890", "description": "healthy", "sample_id": [ "GSM1256988", "GSM1256989", "GSM1256990", "GSM1256991", "GSM1256992", "GSM1256993" ], "type": "disease state", "id": "GDS4890_9" }, { "dataset_id": "GDS4890", "description": "not immunized", "sample_id": [ "GSM1256968", "GSM1256969", "GSM1256970", "GSM1256971" ], "type": "protocol", "id": "GDS4890_10" }, { "dataset_id": "GDS4890", "description": "before YFV immunization", "sample_id": [ "GSM1256988", "GSM1256989", "GSM1256990" ], "type": "protocol", "id": "GDS4890_11" }, { "dataset_id": "GDS4890", "description": "after YFV immunization", "sample_id": [ "GSM1256991", "GSM1256992", "GSM1256993" ], "type": "protocol", "id": "GDS4890_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4890", "version": 1.0, "instances": "10", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4890.tab", "compression": "gz" } ], [ [ "GDS4891.tab" ], { "title": "Discoid lupus erythematosus and psoriasis skin biopsies", "description": "Analysis of discoid lupus erythematosus (DLE) and psoriasis skin samples. DLE is the most common skin manifestation of lupus; psoriasis is the most well-characterized autoimmune skin disease to date. Results provide insight into the molecular mechanisms underlying DLE skin.", "type": "Expression profiling by array", "pubmed_id": "23771123", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE52471", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4891", "description": "discoid lupus erythematosus", "sample_id": [ "GSM1267437", "GSM1267438", "GSM1267439", "GSM1267440", "GSM1267441", "GSM1267442", "GSM1267443" ], "type": "disease state", "id": "GDS4891_1" }, { "dataset_id": "GDS4891", "description": "normal", "sample_id": [ "GSM1267427", "GSM1267428", "GSM1267429", "GSM1267430", "GSM1267431", "GSM1267432", "GSM1267433", "GSM1267434", "GSM1267435", "GSM1267436", "GSM1267444", "GSM1267445", "GSM1267446" ], "type": "disease state", "id": "GDS4891_2" }, { "dataset_id": "GDS4891", "description": "psoriasis", "sample_id": [ "GSM1267412", "GSM1267413", "GSM1267414", "GSM1267415", "GSM1267416", "GSM1267417", "GSM1267418", "GSM1267419", "GSM1267420", "GSM1267421", "GSM1267422", "GSM1267423", "GSM1267424", "GSM1267425", "GSM1267426", "GSM1267447", "GSM1267448", "GSM1267449" ], "type": "disease state", "id": "GDS4891_3" }, { "dataset_id": "GDS4891", "description": "batch: Ovation kit", "sample_id": [ "GSM1267437", "GSM1267438", "GSM1267439", "GSM1267440", "GSM1267441", "GSM1267442", "GSM1267443", "GSM1267444", "GSM1267445", "GSM1267446", "GSM1267447", "GSM1267448", "GSM1267449" ], "type": "other", "id": "GDS4891_4" }, { "dataset_id": "GDS4891", "description": "batch: Affy kit", "sample_id": [ "GSM1267427", "GSM1267428", "GSM1267429", "GSM1267430", "GSM1267431", "GSM1267432", "GSM1267433", "GSM1267434", "GSM1267435", "GSM1267436", "GSM1267412", "GSM1267413", "GSM1267414", "GSM1267415", "GSM1267416", "GSM1267417", "GSM1267418", "GSM1267419", "GSM1267420", "GSM1267421", "GSM1267422", "GSM1267423", "GSM1267424", "GSM1267425", "GSM1267426" ], "type": "other", "id": "GDS4891_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4891", "version": 1.0, "instances": "38", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4891.tab", "compression": "gz" } ], [ [ "GDS4892.tab" ], { "title": "Age effect on skeletal muscle precursor cells", "description": "Analysis of FACS-sorted CD45-Ter119-Sca-1-CD29+Cxcr4+ skeletal muscle precursor (SMP) cells from young, middle-aged, and old C57BL/6 males. Results provide insight into the molecular mechanisms underlying age-related skeletal muscle and stem cell dysfunction.", "type": "Expression profiling by array", "pubmed_id": "24797481", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE50821", "order": "ordered", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4892", "description": "young (2 months)", "sample_id": [ "GSM1230351", "GSM1230352", "GSM1230353", "GSM1230354", "GSM1230355" ], "type": "age", "id": "GDS4892_1" }, { "dataset_id": "GDS4892", "description": "middle aged (12 months)", "sample_id": [ "GSM1230356", "GSM1230357", "GSM1230358", "GSM1230359" ], "type": "age", "id": "GDS4892_2" }, { "dataset_id": "GDS4892", "description": "aged (24 months)", "sample_id": [ "GSM1230360", "GSM1230361", "GSM1230362", "GSM1230363", "GSM1230364" ], "type": "age", "id": "GDS4892_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4892", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4892.tab", "compression": "gz" } ], [ [ "GDS4893.tab" ], { "title": "Heart response to isocitrate dehydrogenase 2 mutations IDH2R140Q and IDH2R172K", "description": "Analysis of hearts from transgenics with conditionally-activated isocitrate dehydrogenase 2 mutant (IDH2) R140Q and R172K alleles. Mutant IDH2 causes cardiomyopathy and neurodegeneration. Results provide insight into molecular mechanisms underlying the cardiac defects associated with IDH2 mutations.", "type": "Expression profiling by array", "pubmed_id": "24589777", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE54838", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4893", "description": "control", "sample_id": [ "GSM1324881", "GSM1324882", "GSM1324883", "GSM1324884" ], "type": "genotype/variation", "id": "GDS4893_1" }, { "dataset_id": "GDS4893", "description": "isocitrate dehydrogenase 2 R140Q mutant", "sample_id": [ "GSM1324885", "GSM1324886", "GSM1324887", "GSM1324888" ], "type": "genotype/variation", "id": "GDS4893_2" }, { "dataset_id": "GDS4893", "description": "isocitrate dehydrogenase 2 R172K mutant", "sample_id": [ "GSM1324889", "GSM1324890", "GSM1324891", "GSM1324892" ], "type": "genotype/variation", "id": "GDS4893_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4893", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4893.tab", "compression": "gz" } ], [ [ "GDS4894.tab" ], { "title": "Resistance exercise training effect on the skeletal muscle", "description": "Analysis of biceps brachii muscles from trained and untrained arms 4 hours after an acute bout of bilateral arm resistance exercise (RE). Subjects underwent a 12 week progressive unilateral arm RE training program. Results provide insight into the adaptive response of skeletal muscle to RE training.", "type": "Expression profiling by array", "pubmed_id": "22052873", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE28998", "order": "none", "update_date": "May 13 2014", "subsets": [ { "dataset_id": "GDS4894", "description": "male", "sample_id": [ "GSM718515", "GSM718516", "GSM718517", "GSM718518", "GSM718519", "GSM718520", "GSM718521", "GSM718522" ], "type": "gender", "id": "GDS4894_1" }, { "dataset_id": "GDS4894", "description": "female", "sample_id": [ "GSM718509", "GSM718510", "GSM718511", "GSM718512", "GSM718513", "GSM718514" ], "type": "gender", "id": "GDS4894_2" }, { "dataset_id": "GDS4894", "description": "trained", "sample_id": [ "GSM718509", "GSM718510", "GSM718511", "GSM718517", "GSM718519", "GSM718520", "GSM718522" ], "type": "protocol", "id": "GDS4894_3" }, { "dataset_id": "GDS4894", "description": "untrained", "sample_id": [ "GSM718512", "GSM718513", "GSM718514", "GSM718515", "GSM718516", "GSM718518", "GSM718521" ], "type": "protocol", "id": "GDS4894_4" }, { "dataset_id": "GDS4894", "description": "1324", "sample_id": [ "GSM718509", "GSM718512" ], "type": "individual", "id": "GDS4894_5" }, { "dataset_id": "GDS4894", "description": "1333", "sample_id": [ "GSM718510", "GSM718513" ], "type": "individual", "id": "GDS4894_6" }, { "dataset_id": "GDS4894", "description": "1340", "sample_id": [ "GSM718511", "GSM718514" ], "type": "individual", "id": "GDS4894_7" }, { "dataset_id": "GDS4894", "description": "1327", "sample_id": [ "GSM718515", "GSM718519" ], "type": "individual", "id": "GDS4894_8" }, { "dataset_id": "GDS4894", "description": "1330", "sample_id": [ "GSM718516", "GSM718520" ], "type": "individual", "id": "GDS4894_9" }, { "dataset_id": "GDS4894", "description": "1335", "sample_id": [ "GSM718517", "GSM718521" ], "type": "individual", "id": "GDS4894_10" }, { "dataset_id": "GDS4894", "description": "1342", "sample_id": [ "GSM718518", "GSM718522" ], "type": "individual", "id": "GDS4894_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4894", "version": 1.0, "instances": "14", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4894.tab", "compression": "gz" } ], [ [ "GDS4895.tab" ], { "title": "SIRT1 deficiency effect on the brain", "description": "Analysis of brains deficient for SIRT1. SIRT1 is an NAD-dependent protein deacetylase that play a role in numerous metabolic processes in many tissues, including the brain. Results provide insight into the impact of SIRT1 on brain physiology.", "type": "Expression profiling by array", "pubmed_id": "22169038", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE28790", "order": "none", "update_date": "May 13 2014", "subsets": [ { "dataset_id": "GDS4895", "description": "SIRT1 null", "sample_id": [ "GSM712769", "GSM712798", "GSM712800", "GSM712802" ], "type": "genotype/variation", "id": "GDS4895_1" }, { "dataset_id": "GDS4895", "description": "wild type", "sample_id": [ "GSM712797", "GSM712799", "GSM712801", "GSM712803" ], "type": "genotype/variation", "id": "GDS4895_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4895", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4895.tab", "compression": "gz" } ], [ [ "GDS4896.tab" ], { "title": "Asthma: white blood cells", "description": "Analysis of white blood cells from children with severe therapy-resistant asthma and those with controlled persistent mild asthma. Results provide insight into the molecular pathogenesis of these asthma pheontypes.", "type": "Expression profiling by array", "pubmed_id": [ "23222870", "25256354" ], "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "transformed count", "reference_series": "GSE27011", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4896", "description": "healthy control", "sample_id": [ "GSM665386", "GSM665387", "GSM665388", "GSM665389", "GSM665390", "GSM665391", "GSM665392", "GSM665393", "GSM665394", "GSM665395", "GSM665396", "GSM665397", "GSM665398", "GSM665399", "GSM665400", "GSM665401", "GSM665402", "GSM665403" ], "type": "disease state", "id": "GDS4896_1" }, { "dataset_id": "GDS4896", "description": "mild asthma", "sample_id": [ "GSM665404", "GSM665405", "GSM665406", "GSM665407", "GSM665408", "GSM665409", "GSM665410", "GSM665411", "GSM665412", "GSM665413", "GSM665414", "GSM665415", "GSM665416", "GSM665417", "GSM665418", "GSM665419", "GSM665420", "GSM665421", "GSM665422" ], "type": "disease state", "id": "GDS4896_2" }, { "dataset_id": "GDS4896", "description": "severe asthma", "sample_id": [ "GSM665423", "GSM665424", "GSM665425", "GSM665426", "GSM665427", "GSM665428", "GSM665429", "GSM665430", "GSM665431", "GSM665432", "GSM665433", "GSM665434", "GSM665435", "GSM665436", "GSM665437", "GSM665438", "GSM665439" ], "type": "disease state", "id": "GDS4896_3" }, { "dataset_id": "GDS4896", "description": "male", "sample_id": [ "GSM665386", "GSM665389", "GSM665390", "GSM665391", "GSM665392", "GSM665393", "GSM665394", "GSM665395", "GSM665396", "GSM665398", "GSM665399", "GSM665400", "GSM665401", "GSM665402", "GSM665403", "GSM665404", "GSM665405", "GSM665406", "GSM665407", "GSM665409", "GSM665413", "GSM665416", "GSM665417", "GSM665418", "GSM665419", "GSM665421", "GSM665422", "GSM665424", "GSM665425", "GSM665429", "GSM665430", "GSM665431", "GSM665432", "GSM665433", "GSM665434", "GSM665435", "GSM665436" ], "type": "gender", "id": "GDS4896_4" }, { "dataset_id": "GDS4896", "description": "female", "sample_id": [ "GSM665387", "GSM665388", "GSM665397", "GSM665408", "GSM665410", "GSM665411", "GSM665412", "GSM665414", "GSM665415", "GSM665420", "GSM665423", "GSM665426", "GSM665427", "GSM665428", "GSM665437", "GSM665438", "GSM665439" ], "type": "gender", "id": "GDS4896_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4896", "version": 1.0, "instances": "54", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4896.tab", "compression": "gz" } ], [ [ "GDS4897.tab" ], { "title": "Skeletal muscle of patients with inherited insulin resistance", "description": "Analysis of muscle from patients with a mutation (Arg1174Gln) in the tyrosine kinase domain of the insulin receptor gene (INSR). This mutation is associated with inherited insulin resistance. Results provide insight into molecular mechanisms underlying insulin resistance in skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "24510228", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE36297", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4897", "description": "matched healthy control", "sample_id": [ "GSM886610", "GSM886611", "GSM886612", "GSM886613", "GSM886614", "GSM886615", "GSM886616", "GSM886617", "GSM886618", "GSM886619" ], "type": "genotype/variation", "id": "GDS4897_1" }, { "dataset_id": "GDS4897", "description": "INSR Arg1174Gln mutation", "sample_id": [ "GSM886620", "GSM886621", "GSM886622", "GSM886623", "GSM886624", "GSM886625" ], "type": "genotype/variation", "id": "GDS4897_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4897", "version": 1.0, "instances": "16", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4897.tab", "compression": "gz" } ], [ [ "GDS4898.tab" ], { "title": "TGF\u03b2 inhibitor effect on induced cardiomyocytes", "description": "Analysis of embryonic fibroblasts and adult cardiac fibroblasts during conversion to induced cardiomyocytes (iCMs) in the presence of TGF\u03b2 inhibitor SB431542. SB increases the efficiency of iCM generation. Results provide insight into role of TGF\u03b2 signaling on conversion of fibroblasts to iCMs.", "type": "Expression profiling by array", "pubmed_id": "24586958", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE54022", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4898", "description": "embryonic fibroblasts", "sample_id": [ "GSM1305950", "GSM1305951", "GSM1305952", "GSM1305953", "GSM1305954", "GSM1305955", "GSM1305956", "GSM1305957", "GSM1305958", "GSM1305959", "GSM1305960", "GSM1305961", "GSM1305962", "GSM1305963", "GSM1305964", "GSM1305965", "GSM1305966", "GSM1305967" ], "type": "cell type", "id": "GDS4898_1" }, { "dataset_id": "GDS4898", "description": "adult cardiac fibroblasts", "sample_id": [ "GSM1305968", "GSM1305969", "GSM1305970", "GSM1305971", "GSM1305972", "GSM1305973", "GSM1305974", "GSM1305975", "GSM1305976" ], "type": "cell type", "id": "GDS4898_2" }, { "dataset_id": "GDS4898", "description": "transcription factors induced", "sample_id": [ "GSM1305959", "GSM1305960", "GSM1305961", "GSM1305962", "GSM1305963", "GSM1305964", "GSM1305965", "GSM1305966", "GSM1305967", "GSM1305968", "GSM1305969", "GSM1305970", "GSM1305971", "GSM1305972", "GSM1305973", "GSM1305974", "GSM1305975", "GSM1305976" ], "type": "protocol", "id": "GDS4898_3" }, { "dataset_id": "GDS4898", "description": "empty vector control", "sample_id": [ "GSM1305950", "GSM1305951", "GSM1305952", "GSM1305953", "GSM1305954", "GSM1305955", "GSM1305956", "GSM1305957", "GSM1305958" ], "type": "protocol", "id": "GDS4898_4" }, { "dataset_id": "GDS4898", "description": "DMSO", "sample_id": [ "GSM1305950", "GSM1305951", "GSM1305952", "GSM1305959", "GSM1305960", "GSM1305961", "GSM1305968", "GSM1305969", "GSM1305970" ], "type": "agent", "id": "GDS4898_5" }, { "dataset_id": "GDS4898", "description": "TGFb1", "sample_id": [ "GSM1305953", "GSM1305954", "GSM1305955", "GSM1305962", "GSM1305963", "GSM1305964", "GSM1305971", "GSM1305972", "GSM1305973" ], "type": "agent", "id": "GDS4898_6" }, { "dataset_id": "GDS4898", "description": "TGFb1 inhibitor SB431542", "sample_id": [ "GSM1305956", "GSM1305957", "GSM1305958", "GSM1305965", "GSM1305966", "GSM1305967", "GSM1305974", "GSM1305975", "GSM1305976" ], "type": "agent", "id": "GDS4898_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4898", "version": 1.0, "instances": "27", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4898.tab", "compression": "gz" } ], [ [ "GDS4899.tab" ], { "title": "Pancreatic cancer-induced cachexia model: muscle, liver and white adipose tissue", "description": "Analysis of 3 tissue types from a pancreatic cancer-induced cachexia model. Cancer cachexia syndrome is associated with severe wasting in advanced-stage cancer. Results provide insight into molecular mechanisms underlying muscle, liver and white adipose tissue cachexia.", "type": "Expression profiling by array", "pubmed_id": "24648112", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE51931", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4899", "description": "white adipose", "sample_id": [ "GSM1255441", "GSM1255439", "GSM1255438", "GSM1255442", "GSM1255440", "GSM1255437" ], "type": "tissue", "id": "GDS4899_1" }, { "dataset_id": "GDS4899", "description": "liver", "sample_id": [ "GSM1255453", "GSM1255451", "GSM1255450", "GSM1255454", "GSM1255452", "GSM1255449" ], "type": "tissue", "id": "GDS4899_2" }, { "dataset_id": "GDS4899", "description": "muscle", "sample_id": [ "GSM1255445", "GSM1255444", "GSM1255447", "GSM1255443", "GSM1255448", "GSM1255446" ], "type": "tissue", "id": "GDS4899_3" }, { "dataset_id": "GDS4899", "description": "control", "sample_id": [ "GSM1255441", "GSM1255439", "GSM1255438", "GSM1255453", "GSM1255451", "GSM1255450", "GSM1255445", "GSM1255444", "GSM1255447" ], "type": "disease state", "id": "GDS4899_4" }, { "dataset_id": "GDS4899", "description": "pancreatic cancer-induced cachexia", "sample_id": [ "GSM1255442", "GSM1255440", "GSM1255437", "GSM1255454", "GSM1255452", "GSM1255449", "GSM1255443", "GSM1255448", "GSM1255446" ], "type": "disease state", "id": "GDS4899_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4899", "version": 1.0, "instances": "18", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4899.tab", "compression": "gz" } ], [ [ "GDS49.tab" ], { "title": "Congenital heart disease (Mu11K-A)", "description": "Use of E9.5 Csx/Nkx2.5 mutant embryos to identify downstream target genes and affected pathways of Nkx2.5 which has a function in cardiac differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE78", "order": "none", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS49", "description": "wildtype", "sample_id": [ "GSM2266", "GSM2267", "GSM2268" ], "type": "strain", "id": "GDS49_1" }, { "dataset_id": "GDS49", "description": "Csx/Nkx2.5 heterozygous", "sample_id": [ "GSM2269", "GSM2270", "GSM2273" ], "type": "strain", "id": "GDS49_2" }, { "dataset_id": "GDS49", "description": "Csx/Nkx2.5 homozygous", "sample_id": [ "GSM2271", "GSM2272", "GSM2274" ], "type": "strain", "id": "GDS49_3" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS49", "version": 1.0, "instances": "9", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS49.tab", "compression": "gz" } ], [ [ "GDS4901.tab" ], { "title": "Tendinopathy", "description": "Analysis of diseased tendons from patients with tendinopathies. Tendinopathies are chronic tendon injuries, common conditions in professional and recreational athletes, as well as individuals engaging in repetitive activities. Results provide insight into the molecular pathogenesis of tendinopathy.", "type": "Expression profiling by array", "pubmed_id": "21539748", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE26051", "order": "none", "update_date": "May 14 2014", "subsets": [ { "dataset_id": "GDS4901", "description": "non-lesional", "sample_id": [ "GSM639748", "GSM639749", "GSM639750", "GSM639751", "GSM639752", "GSM639753", "GSM639754", "GSM639755", "GSM639756", "GSM639757", "GSM639758", "GSM639759", "GSM639760", "GSM639761", "GSM639762", "GSM639763", "GSM639764", "GSM639765", "GSM639766", "GSM639767", "GSM639768", "GSM639769", "GSM639770" ], "type": "disease state", "id": "GDS4901_1" }, { "dataset_id": "GDS4901", "description": "lesional", "sample_id": [ "GSM639771", "GSM639772", "GSM639773", "GSM639774", "GSM639775", "GSM639776", "GSM639777", "GSM639778", "GSM639779", "GSM639780", "GSM639781", "GSM639782", "GSM639783", "GSM639784", "GSM639785", "GSM639786", "GSM639787", "GSM639788", "GSM639789", "GSM639790", "GSM639791", "GSM639792", "GSM639793" ], "type": "disease state", "id": "GDS4901_2" }, { "dataset_id": "GDS4901", "description": "donor 5", "sample_id": [ "GSM639748", "GSM639771" ], "type": "individual", "id": "GDS4901_3" }, { "dataset_id": "GDS4901", "description": "donor 9", "sample_id": [ "GSM639749", "GSM639772" ], "type": "individual", "id": "GDS4901_4" }, { "dataset_id": "GDS4901", "description": "donor 10", "sample_id": [ "GSM639750", "GSM639773" ], "type": "individual", "id": "GDS4901_5" }, { "dataset_id": "GDS4901", "description": "donor 12", "sample_id": [ "GSM639751", "GSM639774" ], "type": "individual", "id": "GDS4901_6" }, { "dataset_id": "GDS4901", "description": "donor 13", "sample_id": [ "GSM639752", "GSM639775" ], "type": "individual", "id": "GDS4901_7" }, { "dataset_id": "GDS4901", "description": "donor 15", "sample_id": [ "GSM639753", "GSM639776" ], "type": "individual", "id": "GDS4901_8" }, { "dataset_id": "GDS4901", "description": "donor 16", "sample_id": [ "GSM639754", "GSM639777" ], "type": "individual", "id": "GDS4901_9" }, { "dataset_id": "GDS4901", "description": "donor 17", "sample_id": [ "GSM639755", "GSM639778" ], "type": "individual", "id": "GDS4901_10" }, { "dataset_id": "GDS4901", "description": "donor 19", "sample_id": [ "GSM639756", "GSM639779" ], "type": "individual", "id": "GDS4901_11" }, { "dataset_id": "GDS4901", "description": "donor 20", "sample_id": [ "GSM639757", "GSM639780" ], "type": "individual", "id": "GDS4901_12" }, { "dataset_id": "GDS4901", "description": "donor 21", "sample_id": [ "GSM639758", "GSM639781" ], "type": "individual", "id": "GDS4901_13" }, { "dataset_id": "GDS4901", "description": "donor 23", "sample_id": [ "GSM639759", "GSM639782" ], "type": "individual", "id": "GDS4901_14" }, { "dataset_id": "GDS4901", "description": "donor 24", "sample_id": [ "GSM639760", "GSM639783" ], "type": "individual", "id": "GDS4901_15" }, { "dataset_id": "GDS4901", "description": "donor 26", "sample_id": [ "GSM639761", "GSM639784" ], "type": "individual", "id": "GDS4901_16" }, { "dataset_id": "GDS4901", "description": "donor 27", "sample_id": [ "GSM639762", "GSM639785" ], "type": "individual", "id": "GDS4901_17" }, { "dataset_id": "GDS4901", "description": "donor 28", "sample_id": [ "GSM639763", "GSM639786" ], "type": "individual", "id": "GDS4901_18" }, { "dataset_id": "GDS4901", "description": "donor 29", "sample_id": [ "GSM639764", "GSM639787" ], "type": "individual", "id": "GDS4901_19" }, { "dataset_id": "GDS4901", "description": "donor 30", "sample_id": [ "GSM639765", "GSM639788" ], "type": "individual", "id": "GDS4901_20" }, { "dataset_id": "GDS4901", "description": "donor 31", "sample_id": [ "GSM639766", "GSM639789" ], "type": "individual", "id": "GDS4901_21" }, { "dataset_id": "GDS4901", "description": "donor 32", "sample_id": [ "GSM639767", "GSM639790" ], "type": "individual", "id": "GDS4901_22" }, { "dataset_id": "GDS4901", "description": "donor 33", "sample_id": [ "GSM639768", "GSM639791" ], "type": "individual", "id": "GDS4901_23" }, { "dataset_id": "GDS4901", "description": "donor 34", "sample_id": [ "GSM639769", "GSM639792" ], "type": "individual", "id": "GDS4901_24" }, { "dataset_id": "GDS4901", "description": "donor 35", "sample_id": [ "GSM639770", "GSM639793" ], "type": "individual", "id": "GDS4901_25" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4901", "version": 1.0, "instances": "46", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4901.tab", "compression": "gz" } ], [ [ "GDS4902.tab" ], { "title": "FIZZ2 deficient lung response to the fibrotic agent bleomycin", "description": "Analysis of lungs of FIZZ2 deficient mutants following endotracheal injection of bleomycin to induce pulmonary fibrosis. Results provide insight into the role of FIZZ2 in the pathogenesis of fibrotic lung dieseases.", "type": "Expression profiling by array", "pubmed_id": "21602491", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE25640", "order": "none", "update_date": "May 14 2014", "subsets": [ { "dataset_id": "GDS4902", "description": "wild type", "sample_id": [ "GSM629991", "GSM629992", "GSM629993", "GSM629994", "GSM629995", "GSM629996" ], "type": "genotype/variation", "id": "GDS4902_1" }, { "dataset_id": "GDS4902", "description": "FIZZ2 null", "sample_id": [ "GSM629997", "GSM629998", "GSM629999", "GSM630000", "GSM630001", "GSM630002" ], "type": "genotype/variation", "id": "GDS4902_2" }, { "dataset_id": "GDS4902", "description": "saline", "sample_id": [ "GSM629991", "GSM629992", "GSM629993", "GSM629997", "GSM629998", "GSM629999" ], "type": "agent", "id": "GDS4902_3" }, { "dataset_id": "GDS4902", "description": "bleomycin", "sample_id": [ "GSM629994", "GSM629995", "GSM629996", "GSM630000", "GSM630001", "GSM630002" ], "type": "agent", "id": "GDS4902_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4902", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4902.tab", "compression": "gz" } ], [ [ "GDS4903.tab" ], { "title": "Rheumatoid arthritic synovium response to rituximab", "description": "Analysis of synovial biopsy samples from anti-TNF resistant rheumatoid arthritis (RA) patients 12 wks after the start of rituximab (RTX) therapy. RTX is a mAb against CD20, expressed on subsets of B cells. Results provide insight into how RTX-induced B cell depletion interferes with RA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "21337318", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE24742", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4903", "description": "baseline", "sample_id": [ "GSM607508", "GSM609031", "GSM609033", "GSM609035", "GSM609037", "GSM609386", "GSM609388", "GSM609390", "GSM609392", "GSM609394", "GSM609396", "GSM609398" ], "type": "agent", "id": "GDS4903_1" }, { "dataset_id": "GDS4903", "description": "rituximab", "sample_id": [ "GSM607509", "GSM609032", "GSM609034", "GSM609036", "GSM609038", "GSM609387", "GSM609389", "GSM609391", "GSM609393", "GSM609395", "GSM609397", "GSM609399" ], "type": "agent", "id": "GDS4903_2" }, { "dataset_id": "GDS4903", "description": "subject 1", "sample_id": [ "GSM607508", "GSM607509" ], "type": "individual", "id": "GDS4903_3" }, { "dataset_id": "GDS4903", "description": "subject 2", "sample_id": [ "GSM609031", "GSM609032" ], "type": "individual", "id": "GDS4903_4" }, { "dataset_id": "GDS4903", "description": "subject 3", "sample_id": [ "GSM609033", "GSM609034" ], "type": "individual", "id": "GDS4903_5" }, { "dataset_id": "GDS4903", "description": "subject 4", "sample_id": [ "GSM609035", "GSM609036" ], "type": "individual", "id": "GDS4903_6" }, { "dataset_id": "GDS4903", "description": "subject 5", "sample_id": [ "GSM609037", "GSM609038" ], "type": "individual", "id": "GDS4903_7" }, { "dataset_id": "GDS4903", "description": "subject 6", "sample_id": [ "GSM609386", "GSM609387" ], "type": "individual", "id": "GDS4903_8" }, { "dataset_id": "GDS4903", "description": "subject 7", "sample_id": [ "GSM609388", "GSM609389" ], "type": "individual", "id": "GDS4903_9" }, { "dataset_id": "GDS4903", "description": "subject 8", "sample_id": [ "GSM609390", "GSM609391" ], "type": "individual", "id": "GDS4903_10" }, { "dataset_id": "GDS4903", "description": "subject 9", "sample_id": [ "GSM609392", "GSM609393" ], "type": "individual", "id": "GDS4903_11" }, { "dataset_id": "GDS4903", "description": "subject 10", "sample_id": [ "GSM609394", "GSM609395" ], "type": "individual", "id": "GDS4903_12" }, { "dataset_id": "GDS4903", "description": "subject 11", "sample_id": [ "GSM609396", "GSM609397" ], "type": "individual", "id": "GDS4903_13" }, { "dataset_id": "GDS4903", "description": "subject 12", "sample_id": [ "GSM609398", "GSM609399" ], "type": "individual", "id": "GDS4903_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4903", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4903.tab", "compression": "gz" } ], [ [ "GDS4904.tab" ], { "title": "Peroxisome proliferator-\u03b3 coactivator-1\u03b1 deficiency effect on aged gastrocnemius muscle", "description": "Analysis of muscle from aged animals with muscle-specific Pgc-1\u03b1 depletion. PGC-1alpha is a transcriptional coactivator of the mitochondrial gene program. Results provide insight into the role of Pgc-1\u03b1 in the glucose intolerance and chronic systemic inflammation associated with aging.", "type": "Expression profiling by array", "pubmed_id": "24280126", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE52550", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4904", "description": "10 weeks (young)", "sample_id": [ "GSM1269619", "GSM1269620", "GSM1269621", "GSM1269622", "GSM1269623", "GSM1269624" ], "type": "age", "id": "GDS4904_1" }, { "dataset_id": "GDS4904", "description": "24 months (old)", "sample_id": [ "GSM1269625", "GSM1269626", "GSM1269627", "GSM1269628", "GSM1269629", "GSM1269630" ], "type": "age", "id": "GDS4904_2" }, { "dataset_id": "GDS4904", "description": "wild type", "sample_id": [ "GSM1269619", "GSM1269620", "GSM1269621", "GSM1269625", "GSM1269626", "GSM1269627" ], "type": "genotype/variation", "id": "GDS4904_3" }, { "dataset_id": "GDS4904", "description": "knockout PGC-1\u03b1", "sample_id": [ "GSM1269622", "GSM1269623", "GSM1269624", "GSM1269628", "GSM1269629", "GSM1269630" ], "type": "genotype/variation", "id": "GDS4904_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4904", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4904.tab", "compression": "gz" } ], [ [ "GDS4905.tab" ], { "title": "Sparsely or densely ionizing radiation effect on mammary gland: dose response and time course", "description": "Analysis of mammary gland from females irradiated at 10 wks of age with varying doses of sparsely or densely ionizing radiation (IR). Mammary tissue collected up to 12 wks post-IR. Results provide insight into molecular response of mammary tissue exposed to different radiation qualities and doses.", "type": "Expression profiling by array", "pubmed_id": "24038768", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "transformed count", "reference_series": "GSE48392", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4905", "description": "sham", "sample_id": [ "GSM1176963", "GSM1176964", "GSM1176965", "GSM1176988", "GSM1176989", "GSM1176990", "GSM1176975", "GSM1176976", "GSM1176977", "GSM1176978" ], "type": "stress", "id": "GDS4905_1" }, { "dataset_id": "GDS4905", "description": "Gamma radiation", "sample_id": [ "GSM1176954", "GSM1176955", "GSM1176956", "GSM1176979", "GSM1176980", "GSM1176981", "GSM1176966", "GSM1176967", "GSM1176968" ], "type": "stress", "id": "GDS4905_2" }, { "dataset_id": "GDS4905", "description": "Si particle radiation", "sample_id": [ "GSM1176960", "GSM1176961", "GSM1176962", "GSM1176985", "GSM1176986", "GSM1176987", "GSM1176972", "GSM1176973", "GSM1176974", "GSM1176957", "GSM1176958", "GSM1176959", "GSM1176982", "GSM1176983", "GSM1176984", "GSM1176969", "GSM1176970", "GSM1176971" ], "type": "stress", "id": "GDS4905_3" }, { "dataset_id": "GDS4905", "description": "control", "sample_id": [ "GSM1176963", "GSM1176964", "GSM1176965", "GSM1176988", "GSM1176989", "GSM1176990", "GSM1176975", "GSM1176976", "GSM1176977", "GSM1176978" ], "type": "dose", "id": "GDS4905_4" }, { "dataset_id": "GDS4905", "description": "10cGy", "sample_id": [ "GSM1176960", "GSM1176961", "GSM1176962", "GSM1176985", "GSM1176986", "GSM1176987", "GSM1176972", "GSM1176973", "GSM1176974" ], "type": "dose", "id": "GDS4905_5" }, { "dataset_id": "GDS4905", "description": "30cGy", "sample_id": [ "GSM1176957", "GSM1176958", "GSM1176959", "GSM1176982", "GSM1176983", "GSM1176984", "GSM1176969", "GSM1176970", "GSM1176971" ], "type": "dose", "id": "GDS4905_6" }, { "dataset_id": "GDS4905", "description": "100cGy", "sample_id": [ "GSM1176954", "GSM1176955", "GSM1176956", "GSM1176979", "GSM1176980", "GSM1176981", "GSM1176966", "GSM1176967", "GSM1176968" ], "type": "dose", "id": "GDS4905_7" }, { "dataset_id": "GDS4905", "description": "1 week", "sample_id": [ "GSM1176963", "GSM1176964", "GSM1176965", "GSM1176954", "GSM1176955", "GSM1176956", "GSM1176960", "GSM1176961", "GSM1176962", "GSM1176957", "GSM1176958", "GSM1176959" ], "type": "time", "id": "GDS4905_8" }, { "dataset_id": "GDS4905", "description": "4 weeks", "sample_id": [ "GSM1176975", "GSM1176976", "GSM1176977", "GSM1176978", "GSM1176966", "GSM1176967", "GSM1176968", "GSM1176972", "GSM1176973", "GSM1176974", "GSM1176969", "GSM1176970", "GSM1176971" ], "type": "time", "id": "GDS4905_9" }, { "dataset_id": "GDS4905", "description": "12 weeks", "sample_id": [ "GSM1176988", "GSM1176989", "GSM1176990", "GSM1176979", "GSM1176980", "GSM1176981", "GSM1176985", "GSM1176986", "GSM1176987", "GSM1176982", "GSM1176983", "GSM1176984" ], "type": "time", "id": "GDS4905_10" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4905", "version": 1.0, "instances": "37", "variables": 25183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4905.tab", "compression": "gz" } ], [ [ "GDS4906.tab" ], { "title": "Exercise training effect on chronic obstructive pulmonary disease patients: vastus lateralis muscle", "description": "Analysis of muscle from chronic obstructive pulmonary disease (COPD) patients before and after 8 weeks of exercise training. Skeletal muscle dysfunction and muscle wasting are hallmark systemic effects of COPD. Results provide insight into molecular mechanisms underlying COPD muscle degeneration.", "type": "Expression profiling by array", "pubmed_id": "21909251", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "transformed count", "reference_series": "GSE27536", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS4906", "description": "chronic obstructive pulmonary disease", "sample_id": [ "GSM680053", "GSM680054", "GSM680055", "GSM680056", "GSM680057", "GSM680058", "GSM680059", "GSM680060", "GSM680061", "GSM680062", "GSM680063", "GSM680064", "GSM680065", "GSM680066", "GSM680067", "GSM680068", "GSM680069", "GSM680070", "GSM680071", "GSM680072", "GSM680073", "GSM680074", "GSM680075", "GSM680076", "GSM680077", "GSM680078", "GSM680079", "GSM680080", "GSM680081", "GSM680082" ], "type": "disease state", "id": "GDS4906_1" }, { "dataset_id": "GDS4906", "description": "healthy", "sample_id": [ "GSM680029", "GSM680030", "GSM680031", "GSM680032", "GSM680033", "GSM680034", "GSM680035", "GSM680036", "GSM680037", "GSM680038", "GSM680039", "GSM680040", "GSM680041", "GSM680042", "GSM680043", "GSM680044", "GSM680045", "GSM680046", "GSM680047", "GSM680048", "GSM680049", "GSM680050", "GSM680051", "GSM680052" ], "type": "disease state", "id": "GDS4906_2" }, { "dataset_id": "GDS4906", "description": "subject 1", "sample_id": [ "GSM680029", "GSM680041" ], "type": "individual", "id": "GDS4906_3" }, { "dataset_id": "GDS4906", "description": "subject 2", "sample_id": [ "GSM680035", "GSM680047" ], "type": "individual", "id": "GDS4906_4" }, { "dataset_id": "GDS4906", "description": "subject 4", "sample_id": [ "GSM680036", "GSM680048" ], "type": "individual", "id": "GDS4906_5" }, { "dataset_id": "GDS4906", "description": "subject 5", "sample_id": [ "GSM680037", "GSM680049" ], "type": "individual", "id": "GDS4906_6" }, { "dataset_id": "GDS4906", "description": "subject 7", "sample_id": [ "GSM680038", "GSM680050" ], "type": "individual", "id": "GDS4906_7" }, { "dataset_id": "GDS4906", "description": "subject 8", "sample_id": [ "GSM680039", "GSM680051" ], "type": "individual", "id": "GDS4906_8" }, { "dataset_id": "GDS4906", "description": "subject 9", "sample_id": [ "GSM680040", "GSM680052" ], "type": "individual", "id": "GDS4906_9" }, { "dataset_id": "GDS4906", "description": "subject 10", "sample_id": [ "GSM680030", "GSM680042" ], "type": "individual", "id": "GDS4906_10" }, { "dataset_id": "GDS4906", "description": "subject 11", "sample_id": [ "GSM680031", "GSM680043" ], "type": "individual", "id": "GDS4906_11" }, { "dataset_id": "GDS4906", "description": "subject 12", "sample_id": [ "GSM680032", "GSM680044" ], "type": "individual", "id": "GDS4906_12" }, { "dataset_id": "GDS4906", "description": "subject 13", "sample_id": [ "GSM680033", "GSM680045" ], "type": "individual", "id": "GDS4906_13" }, { "dataset_id": "GDS4906", "description": "subject 15", "sample_id": [ "GSM680034", "GSM680046" ], "type": "individual", "id": "GDS4906_14" }, { "dataset_id": "GDS4906", "description": "subject 17", "sample_id": [ "GSM680053", "GSM680062" ], "type": "individual", "id": "GDS4906_15" }, { "dataset_id": "GDS4906", "description": "subject 18", "sample_id": [ "GSM680054", "GSM680063" ], "type": "individual", "id": "GDS4906_16" }, { "dataset_id": "GDS4906", "description": "subject 20", "sample_id": [ "GSM680055", "GSM680064" ], "type": "individual", "id": "GDS4906_17" }, { "dataset_id": "GDS4906", "description": "subject 22", "sample_id": [ "GSM680056", "GSM680065" ], "type": "individual", "id": "GDS4906_18" }, { "dataset_id": "GDS4906", "description": "subject 24", "sample_id": [ "GSM680057", "GSM680066" ], "type": "individual", "id": "GDS4906_19" }, { "dataset_id": "GDS4906", "description": "subject 25", "sample_id": [ "GSM680058", "GSM680067" ], "type": "individual", "id": "GDS4906_20" }, { "dataset_id": "GDS4906", "description": "subject 27", "sample_id": [ "GSM680059", "GSM680068" ], "type": "individual", "id": "GDS4906_21" }, { "dataset_id": "GDS4906", "description": "subject 30", "sample_id": [ "GSM680060", "GSM680069" ], "type": "individual", "id": "GDS4906_22" }, { "dataset_id": "GDS4906", "description": "subject 34", "sample_id": [ "GSM680061", "GSM680070" ], "type": "individual", "id": "GDS4906_23" }, { "dataset_id": "GDS4906", "description": "subject 36", "sample_id": [ "GSM680071", "GSM680077" ], "type": "individual", "id": "GDS4906_24" }, { "dataset_id": "GDS4906", "description": "subject 37", "sample_id": [ "GSM680072", "GSM680078" ], "type": "individual", "id": "GDS4906_25" }, { "dataset_id": "GDS4906", "description": "subject 38", "sample_id": [ "GSM680073", "GSM680079" ], "type": "individual", "id": "GDS4906_26" }, { "dataset_id": "GDS4906", "description": "subject 39", "sample_id": [ "GSM680074", "GSM680080" ], "type": "individual", "id": "GDS4906_27" }, { "dataset_id": "GDS4906", "description": "subject 41", "sample_id": [ "GSM680075", "GSM680081" ], "type": "individual", "id": "GDS4906_28" }, { "dataset_id": "GDS4906", "description": "subject 42", "sample_id": [ "GSM680076", "GSM680082" ], "type": "individual", "id": "GDS4906_29" }, { "dataset_id": "GDS4906", "description": "sedentary", "sample_id": [ "GSM680029", "GSM680030", "GSM680031", "GSM680032", "GSM680033", "GSM680034", "GSM680035", "GSM680036", "GSM680037", "GSM680038", "GSM680039", "GSM680040", "GSM680053", "GSM680054", "GSM680055", "GSM680056", "GSM680057", "GSM680058", "GSM680059", "GSM680060", "GSM680061", "GSM680071", "GSM680072", "GSM680073", "GSM680074", "GSM680075", "GSM680076" ], "type": "protocol", "id": "GDS4906_30" }, { "dataset_id": "GDS4906", "description": "exercise trained", "sample_id": [ "GSM680041", "GSM680042", "GSM680043", "GSM680044", "GSM680045", "GSM680046", "GSM680047", "GSM680048", "GSM680049", "GSM680050", "GSM680051", "GSM680052", "GSM680062", "GSM680063", "GSM680064", "GSM680065", "GSM680066", "GSM680067", "GSM680068", "GSM680069", "GSM680070", "GSM680077", "GSM680078", "GSM680079", "GSM680080", "GSM680081", "GSM680082" ], "type": "protocol", "id": "GDS4906_31" }, { "dataset_id": "GDS4906", "description": "BMI: normal", "sample_id": [ "GSM680029", "GSM680030", "GSM680031", "GSM680032", "GSM680033", "GSM680034", "GSM680035", "GSM680036", "GSM680037", "GSM680038", "GSM680039", "GSM680040", "GSM680041", "GSM680042", "GSM680043", "GSM680044", "GSM680045", "GSM680046", "GSM680047", "GSM680048", "GSM680049", "GSM680050", "GSM680051", "GSM680052" ], "type": "other", "id": "GDS4906_32" }, { "dataset_id": "GDS4906", "description": "BMI: normal", "sample_id": [ "GSM680053", "GSM680054", "GSM680055", "GSM680056", "GSM680057", "GSM680058", "GSM680059", "GSM680060", "GSM680061", "GSM680062", "GSM680063", "GSM680064", "GSM680065", "GSM680066", "GSM680067", "GSM680068", "GSM680069", "GSM680070" ], "type": "other", "id": "GDS4906_33" }, { "dataset_id": "GDS4906", "description": "BMI: low", "sample_id": [ "GSM680071", "GSM680072", "GSM680073", "GSM680074", "GSM680075", "GSM680076", "GSM680077", "GSM680078", "GSM680079", "GSM680080", "GSM680081", "GSM680082" ], "type": "other", "id": "GDS4906_34" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4906", "version": 1.0, "instances": "54", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4906.tab", "compression": "gz" } ], [ [ "GDS4907.tab" ], { "title": "Postinfarction heart failure model: left ventricle", "description": "Analysis of LV from males subjected to left coronary artery ligation to induce large, moderate, or small myocardial infarctions (MI). Only animals with large MIs develop LV remodeling and heart failure (HF). Results provide insight into the molecular basis of the progression of LV remodeling and HF.", "type": "Expression profiling by array", "pubmed_id": "24206753", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE47495", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS4907", "description": "sham operation", "sample_id": [ "GSM1151154", "GSM1151155", "GSM1151156", "GSM1151157", "GSM1151158", "GSM1151159" ], "type": "protocol", "id": "GDS4907_1" }, { "dataset_id": "GDS4907", "description": "small myocardial infarction", "sample_id": [ "GSM1151160", "GSM1151161", "GSM1151162", "GSM1151163", "GSM1151164", "GSM1151165" ], "type": "protocol", "id": "GDS4907_2" }, { "dataset_id": "GDS4907", "description": "moderate myocardial infarction", "sample_id": [ "GSM1151166", "GSM1151167", "GSM1151168", "GSM1151169", "GSM1151170", "GSM1151171" ], "type": "protocol", "id": "GDS4907_3" }, { "dataset_id": "GDS4907", "description": "large myocardial infarction", "sample_id": [ "GSM1151172", "GSM1151173", "GSM1151174", "GSM1151175", "GSM1151176" ], "type": "protocol", "id": "GDS4907_4" }, { "dataset_id": "GDS4907", "description": "control", "sample_id": [ "GSM1151154", "GSM1151155", "GSM1151156", "GSM1151157", "GSM1151158", "GSM1151159" ], "type": "disease state", "id": "GDS4907_5" }, { "dataset_id": "GDS4907", "description": "compensated LV injury", "sample_id": [ "GSM1151160", "GSM1151161", "GSM1151162", "GSM1151163", "GSM1151164", "GSM1151165", "GSM1151166", "GSM1151167", "GSM1151168", "GSM1151169", "GSM1151170", "GSM1151171", "GSM1151172" ], "type": "disease state", "id": "GDS4907_6" }, { "dataset_id": "GDS4907", "description": "progressive decompensation of LV and heart failure", "sample_id": [ "GSM1151173", "GSM1151174", "GSM1151175", "GSM1151176" ], "type": "disease state", "id": "GDS4907_7" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4907", "version": 1.0, "instances": "23", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4907.tab", "compression": "gz" } ], [ [ "GDS4908.tab" ], { "title": "Postinfarction heart failure model: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from males subjected to left coronary artery ligation to induce large myocardial infarctions (MI). Only animals with large MIs develop LV remodeling and heart failure (HF). Results provide insight into the molecular basis of the progression of LV remodeling and HF.", "type": "Expression profiling by array", "pubmed_id": "24206753", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE47495", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS4908", "description": "sham operated", "sample_id": [ "GSM1151177", "GSM1151178", "GSM1151179", "GSM1151180", "GSM1151181", "GSM1151182" ], "type": "protocol", "id": "GDS4908_1" }, { "dataset_id": "GDS4908", "description": "large myocardial infarction", "sample_id": [ "GSM1151183", "GSM1151184", "GSM1151185", "GSM1151186", "GSM1151187" ], "type": "protocol", "id": "GDS4908_2" }, { "dataset_id": "GDS4908", "description": "control", "sample_id": [ "GSM1151177", "GSM1151178", "GSM1151179", "GSM1151180", "GSM1151181", "GSM1151182" ], "type": "disease state", "id": "GDS4908_3" }, { "dataset_id": "GDS4908", "description": "compensated LV injury", "sample_id": [ "GSM1151183" ], "type": "disease state", "id": "GDS4908_4" }, { "dataset_id": "GDS4908", "description": "progressive decompensation of LV and heart failure", "sample_id": [ "GSM1151184", "GSM1151185", "GSM1151186", "GSM1151187" ], "type": "disease state", "id": "GDS4908_5" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS4908", "version": 1.0, "instances": "11", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4908.tab", "compression": "gz" } ], [ [ "GDS4909.tab" ], { "title": "Exercise training effect on metabolic syndrome patients: vastus lateralis muscle", "description": "Analysis of skeletal muscle from metabolic syndrome (MS) female patients before and after 6 months of exercise training. MS is associated with insulin resistance. Results provide insight into the molecular mechanisms underlying insulin-resistant skeletal muscle in MS patients.", "type": "Expression profiling by array", "pubmed_id": "23771909", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE43760", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS4909", "description": "metabolic syndrome", "sample_id": [ "GSM1070450", "GSM1070448", "GSM1070446", "GSM1070444", "GSM1070442", "GSM1070440", "GSM1070449", "GSM1070447", "GSM1070445", "GSM1070443", "GSM1070441", "GSM1070439" ], "type": "disease state", "id": "GDS4909_1" }, { "dataset_id": "GDS4909", "description": "healthy control", "sample_id": [ "GSM1070456", "GSM1070454", "GSM1070452", "GSM1070462", "GSM1070460", "GSM1070458", "GSM1070455", "GSM1070453", "GSM1070451", "GSM1070461", "GSM1070459", "GSM1070457" ], "type": "disease state", "id": "GDS4909_2" }, { "dataset_id": "GDS4909", "description": "before exercise training", "sample_id": [ "GSM1070455", "GSM1070453", "GSM1070451", "GSM1070461", "GSM1070459", "GSM1070457", "GSM1070449", "GSM1070447", "GSM1070445", "GSM1070443", "GSM1070441", "GSM1070439" ], "type": "protocol", "id": "GDS4909_3" }, { "dataset_id": "GDS4909", "description": "after exercise training", "sample_id": [ "GSM1070456", "GSM1070454", "GSM1070452", "GSM1070462", "GSM1070460", "GSM1070458", "GSM1070450", "GSM1070448", "GSM1070446", "GSM1070444", "GSM1070442", "GSM1070440" ], "type": "protocol", "id": "GDS4909_4" }, { "dataset_id": "GDS4909", "description": "subject 1", "sample_id": [ "GSM1070440", "GSM1070439" ], "type": "individual", "id": "GDS4909_5" }, { "dataset_id": "GDS4909", "description": "subject 2", "sample_id": [ "GSM1070442", "GSM1070441" ], "type": "individual", "id": "GDS4909_6" }, { "dataset_id": "GDS4909", "description": "subject 3", "sample_id": [ "GSM1070444", "GSM1070443" ], "type": "individual", "id": "GDS4909_7" }, { "dataset_id": "GDS4909", "description": "subject 4", "sample_id": [ "GSM1070446", "GSM1070445" ], "type": "individual", "id": "GDS4909_8" }, { "dataset_id": "GDS4909", "description": "subject 5", "sample_id": [ "GSM1070448", "GSM1070447" ], "type": "individual", "id": "GDS4909_9" }, { "dataset_id": "GDS4909", "description": "subject 6", "sample_id": [ "GSM1070450", "GSM1070449" ], "type": "individual", "id": "GDS4909_10" }, { "dataset_id": "GDS4909", "description": "subject 7", "sample_id": [ "GSM1070452", "GSM1070451" ], "type": "individual", "id": "GDS4909_11" }, { "dataset_id": "GDS4909", "description": "subject 8", "sample_id": [ "GSM1070454", "GSM1070453" ], "type": "individual", "id": "GDS4909_12" }, { "dataset_id": "GDS4909", "description": "subject 9", "sample_id": [ "GSM1070456", "GSM1070455" ], "type": "individual", "id": "GDS4909_13" }, { "dataset_id": "GDS4909", "description": "subject 10", "sample_id": [ "GSM1070458", "GSM1070457" ], "type": "individual", "id": "GDS4909_14" }, { "dataset_id": "GDS4909", "description": "subject 11", "sample_id": [ "GSM1070460", "GSM1070459" ], "type": "individual", "id": "GDS4909_15" }, { "dataset_id": "GDS4909", "description": "subject 12", "sample_id": [ "GSM1070462", "GSM1070461" ], "type": "individual", "id": "GDS4909_16" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4909", "version": 1.0, "instances": "24", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4909.tab", "compression": "gz" } ], [ [ "GDS491.tab" ], { "title": "Toxicosis induced by endophyte infected fescue seed", "description": "Characterization of fescue toxicosis in luteal tissue. Heifers fed endophyte free fescue seed (EF), endophyte infected fescue seed (EI) or EI supplemented with domperidone (EID). Fescue toxicosis thought to affect dopamine signaling pathways.", "type": "Expression profiling by array", "pubmed_id": "14694430", "platform": "GPL368", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10399", "sample_organism": "Bos taurus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE566", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS491", "description": "endophyte free diet", "sample_id": [ "GSM8662", "GSM8663", "GSM8664" ], "type": "protocol", "id": "GDS491_1" }, { "dataset_id": "GDS491", "description": "endophyte infected diet", "sample_id": [ "GSM8665", "GSM8666", "GSM8667", "GSM8668", "GSM8669", "GSM8670" ], "type": "protocol", "id": "GDS491_2" }, { "dataset_id": "GDS491", "description": "control", "sample_id": [ "GSM8662", "GSM8663", "GSM8664", "GSM8665", "GSM8666", "GSM8667" ], "type": "agent", "id": "GDS491_3" }, { "dataset_id": "GDS491", "description": "domperidone", "sample_id": [ "GSM8668", "GSM8669", "GSM8670" ], "type": "agent", "id": "GDS491_4" } ], "taxid": "9913", "genes": 9093, "aggregation_function": "mean", "name": "GDS491", "version": 1.0, "instances": "9", "variables": 9096, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS491.tab", "compression": "gz" } ], [ [ "GDS4910.tab" ], { "title": "Stearoyl-CoA desaturase-1 deficiency effect on the skin", "description": "Analysis of skins of animals with skin-specific deletion of Scd1. Animals with skin-specific deletion of Scd1 develop severe sebaceous gland hypoplasia that results in progressive scarring alopecia. Results provide insight into the molecular basis of Scd1-deficient skin pathology", "type": "Expression profiling by array", "pubmed_id": "21573029", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE24243", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4910", "description": "wild type", "sample_id": [ "GSM596163", "GSM596164", "GSM596165" ], "type": "genotype/variation", "id": "GDS4910_1" }, { "dataset_id": "GDS4910", "description": "SCD1 null", "sample_id": [ "GSM596166", "GSM596167", "GSM596168" ], "type": "genotype/variation", "id": "GDS4910_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4910", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4910.tab", "compression": "gz" } ], [ [ "GDS4911.tab" ], { "title": "Traumatic brain injury model: time course", "description": "Analysis of lateral cortices of brains from Wistar males for up to 48 hours following traumatic brain injury (TBI). TBI induced by lateral moderate fluid percussion. Results provide insight into the nature of temporal events that occur at the molecular level following TBI.", "type": "Expression profiling by array", "pubmed_id": "20950674", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE24047", "order": "none", "update_date": "May 16 2014", "subsets": [ { "dataset_id": "GDS4911", "description": "traumatic brain injury", "sample_id": [ "GSM591739", "GSM591740", "GSM591741", "GSM591742", "GSM591743", "GSM591744", "GSM591745", "GSM591746", "GSM591747", "GSM591748", "GSM591749", "GSM591750" ], "type": "shock", "id": "GDS4911_1" }, { "dataset_id": "GDS4911", "description": "control", "sample_id": [ "GSM591751", "GSM591752", "GSM591753", "GSM591754" ], "type": "shock", "id": "GDS4911_2" }, { "dataset_id": "GDS4911", "description": "3 h", "sample_id": [ "GSM591739", "GSM591740", "GSM591741", "GSM591751" ], "type": "time", "id": "GDS4911_3" }, { "dataset_id": "GDS4911", "description": "6 h", "sample_id": [ "GSM591742", "GSM591743", "GSM591744", "GSM591752" ], "type": "time", "id": "GDS4911_4" }, { "dataset_id": "GDS4911", "description": "12 h", "sample_id": [ "GSM591745", "GSM591746", "GSM591747", "GSM591753" ], "type": "time", "id": "GDS4911_5" }, { "dataset_id": "GDS4911", "description": "48 h", "sample_id": [ "GSM591748", "GSM591749", "GSM591750", "GSM591754" ], "type": "time", "id": "GDS4911_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4911", "version": 1.0, "instances": "16", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4911.tab", "compression": "gz" } ], [ [ "GDS4912.tab" ], { "title": "Hippocampal neural progenitor cell response to the small molecule KHS101: dose response", "description": "Analysis of hippocampal neural progenitor cells treated with 1.7 or 5 uM KHS101. KHS101 is a synthetic 4-aminothiazole analog that induces the neuronal differentiation of neural progenitor cells. Results provide insight into the mechanism of action of KHS101.", "type": "Expression profiling by array", "pubmed_id": "20823227", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE23668", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4912", "description": "KHS101", "sample_id": [ "GSM580630", "GSM580631" ], "type": "agent", "id": "GDS4912_1" }, { "dataset_id": "GDS4912", "description": "retinoic acid", "sample_id": [ "GSM580632" ], "type": "agent", "id": "GDS4912_2" }, { "dataset_id": "GDS4912", "description": "DMSO", "sample_id": [ "GSM580633" ], "type": "agent", "id": "GDS4912_3" }, { "dataset_id": "GDS4912", "description": "0.1 %", "sample_id": [ "GSM580633" ], "type": "dose", "id": "GDS4912_4" }, { "dataset_id": "GDS4912", "description": "1 uM", "sample_id": [ "GSM580632" ], "type": "dose", "id": "GDS4912_5" }, { "dataset_id": "GDS4912", "description": "5 uM", "sample_id": [ "GSM580630" ], "type": "dose", "id": "GDS4912_6" }, { "dataset_id": "GDS4912", "description": "1.7 uM", "sample_id": [ "GSM580631" ], "type": "dose", "id": "GDS4912_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4912", "version": 1.0, "instances": "4", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4912.tab", "compression": "gz" } ], [ [ "GDS4913.tab" ], { "title": "Cyclophilin D deficiency effect on the heart", "description": "Analysis of hearts from mutants lacking cyclophilin D (CypD), encoded by the Ppif gene. CypD is a mitochondrial matrix peptidyl-prolyl isomerase. Loss of CypD in cardiac mitochondria results in susceptibility to heart failure. Results provide insight into the molecular basis of this susceptibility.", "type": "Expression profiling by array", "pubmed_id": "20890047", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23028", "order": "none", "update_date": "May 19 2014", "subsets": [ { "dataset_id": "GDS4913", "description": "Ppif null", "sample_id": [ "GSM568457", "GSM568458", "GSM568459" ], "type": "genotype/variation", "id": "GDS4913_1" }, { "dataset_id": "GDS4913", "description": "wild type", "sample_id": [ "GSM568460", "GSM568461", "GSM568462" ], "type": "genotype/variation", "id": "GDS4913_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4913", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4913.tab", "compression": "gz" } ], [ [ "GDS4914.tab" ], { "title": "Lung response to arsenate", "description": "Analysis of lungs of females exposed to 50 ppm arsenate (As) for 90 days. Results compared with those from bisulfite sequencing in order to provide insight into the molecular mechanisms underlying the toxicological effects of As.", "type": "Expression profiling by array", "pubmed_id": "20667999", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE21193", "order": "none", "update_date": "Jul 02 2014", "subsets": [ { "dataset_id": "GDS4914", "description": "arsenate", "sample_id": [ "GSM501443", "GSM501446", "GSM501447", "GSM501448", "GSM501449" ], "type": "agent", "id": "GDS4914_1" }, { "dataset_id": "GDS4914", "description": "control", "sample_id": [ "GSM501444", "GSM501445", "GSM501450", "GSM501451", "GSM501452" ], "type": "agent", "id": "GDS4914_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4914", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4914.tab", "compression": "gz" } ], [ [ "GDS4915.tab" ], { "title": "Lymphoblastoid cell response to low-dose arsenic exposure in vitro", "description": "Analysis of TK6 lymphoblastoid cells treated with 0.1 uM sodium arsenite for 24 hours. Results provide insight into the molecular impact resulting from exposure to an environmentally relevant dose of arsenic.", "type": "Expression profiling by array", "pubmed_id": "21457566", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE20320", "order": "none", "update_date": "May 19 2014", "subsets": [ { "dataset_id": "GDS4915", "description": "arsenic", "sample_id": [ "GSM509191", "GSM509192" ], "type": "agent", "id": "GDS4915_1" }, { "dataset_id": "GDS4915", "description": "control", "sample_id": [ "GSM509193", "GSM509194" ], "type": "agent", "id": "GDS4915_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4915", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4915.tab", "compression": "gz" } ], [ [ "GDS4916.tab" ], { "title": "Lymphoblastoid cell response to low-dose cadmium exposure in vitro", "description": "Analysis of TK6 lymphoblastoid cells treated with 0.1 uM cadmium chloride for 24 hours. Results provide insight into the molecular impact resulting from exposure to an environmentally relevant dose of cadmium.", "type": "Expression profiling by array", "pubmed_id": "21457566", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE20320", "order": "none", "update_date": "May 19 2014", "subsets": [ { "dataset_id": "GDS4916", "description": "cadmium", "sample_id": [ "GSM509195", "GSM509196" ], "type": "agent", "id": "GDS4916_1" }, { "dataset_id": "GDS4916", "description": "control", "sample_id": [ "GSM509197", "GSM509198" ], "type": "agent", "id": "GDS4916_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4916", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4916.tab", "compression": "gz" } ], [ [ "GDS4917.tab" ], { "title": "Airway epithelial cell response to various cigarette smoke condensates", "description": "Analysis of primary airway epithelial cells treated for 18 hours with cigarette smoke condensates prepared from 5 commercial and 4 research cigarettes, at doses of about 4 ug/ml nicotine. Cigarettes vary in tobacco blend, filter ventilation, additives, and other physical and chemical properties.", "type": "Expression profiling by array", "pubmed_id": "20015843", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE18235", "order": "none", "update_date": "May 19 2014", "subsets": [ { "dataset_id": "GDS4917", "description": "2R4F Kentucky reference cigarette", "sample_id": [ "GSM455794", "GSM455795" ], "type": "agent", "id": "GDS4917_1" }, { "dataset_id": "GDS4917", "description": "Commercial low nitrosamine cigarette", "sample_id": [ "GSM455796", "GSM455797" ], "type": "agent", "id": "GDS4917_2" }, { "dataset_id": "GDS4917", "description": "Experimental 100% reconstituted tobacco cigarette", "sample_id": [ "GSM455798", "GSM455799" ], "type": "agent", "id": "GDS4917_3" }, { "dataset_id": "GDS4917", "description": "Commercial low ignition propensity cigarette", "sample_id": [ "GSM455800", "GSM455801" ], "type": "agent", "id": "GDS4917_4" }, { "dataset_id": "GDS4917", "description": "Experimental 100% burley tobacco cigarette", "sample_id": [ "GSM455802", "GSM455803" ], "type": "agent", "id": "GDS4917_5" }, { "dataset_id": "GDS4917", "description": "Experimental 100% flue-cured tobacco cigarette", "sample_id": [ "GSM455804", "GSM455805" ], "type": "agent", "id": "GDS4917_6" }, { "dataset_id": "GDS4917", "description": "Commercial ultra low-tar nonmenthol cigarette", "sample_id": [ "GSM455806", "GSM455807" ], "type": "agent", "id": "GDS4917_7" }, { "dataset_id": "GDS4917", "description": "Commercial full flavor nonmenthol cigarette", "sample_id": [ "GSM455808", "GSM455809" ], "type": "agent", "id": "GDS4917_8" }, { "dataset_id": "GDS4917", "description": "Commercial light nonmenthol cigarette", "sample_id": [ "GSM455810", "GSM455811", "GSM455812", "GSM455813" ], "type": "agent", "id": "GDS4917_9" }, { "dataset_id": "GDS4917", "description": "35-ml puff volume, 2-s puff, and 1 min between puffs", "sample_id": [ "GSM455794", "GSM455795", "GSM455796", "GSM455797", "GSM455798", "GSM455799", "GSM455800", "GSM455801", "GSM455802", "GSM455803", "GSM455804", "GSM455805", "GSM455806", "GSM455807", "GSM455808", "GSM455809", "GSM455810", "GSM455811" ], "type": "protocol", "id": "GDS4917_10" }, { "dataset_id": "GDS4917", "description": "45 ml puff volume, 2-s puff, 30-s interval, and ventilation holes 50% blocked", "sample_id": [ "GSM455812", "GSM455813" ], "type": "protocol", "id": "GDS4917_11" }, { "dataset_id": "GDS4917", "description": "untreated", "sample_id": [ "GSM455792", "GSM455793" ], "type": "agent", "id": "GDS4917_12" }, { "dataset_id": "GDS4917", "description": "control", "sample_id": [ "GSM455792", "GSM455793" ], "type": "protocol", "id": "GDS4917_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4917", "version": 1.0, "instances": "22", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4917.tab", "compression": "gz" } ], [ [ "GDS4918.tab" ], { "title": "Fasting effect on white adipose tissue, liver and skeletal muscle", "description": "Analysis of white adipose tissue, liver and skeletal muscle in 24h fasted C57Bl/6J males. Results provide insight into the molecular mechanisms underlying metabolic adaption to food deprivation in various tissues.", "type": "Expression profiling by array", "pubmed_id": "24191950", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE46495", "order": "none", "update_date": "May 04 2015", "subsets": [ { "dataset_id": "GDS4918", "description": "ad libitum chow", "sample_id": [ "GSM1131278", "GSM1131279", "GSM1131280", "GSM1131281", "GSM1131282", "GSM1131283", "GSM1131284", "GSM1131285", "GSM1131286", "GSM1131287", "GSM1131288", "GSM1131289", "GSM1131290", "GSM1131291", "GSM1131292" ], "type": "protocol", "id": "GDS4918_1" }, { "dataset_id": "GDS4918", "description": "fasted", "sample_id": [ "GSM1131293", "GSM1131294", "GSM1131295", "GSM1131296", "GSM1131297", "GSM1131298", "GSM1131299", "GSM1131300", "GSM1131301", "GSM1131302", "GSM1131303", "GSM1131304", "GSM1131305", "GSM1131306", "GSM1131307" ], "type": "protocol", "id": "GDS4918_2" }, { "dataset_id": "GDS4918", "description": "white adipose tissue", "sample_id": [ "GSM1131278", "GSM1131279", "GSM1131280", "GSM1131281", "GSM1131282", "GSM1131293", "GSM1131294", "GSM1131295", "GSM1131296", "GSM1131297" ], "type": "tissue", "id": "GDS4918_3" }, { "dataset_id": "GDS4918", "description": "liver", "sample_id": [ "GSM1131287", "GSM1131286", "GSM1131285", "GSM1131284", "GSM1131283", "GSM1131302", "GSM1131301", "GSM1131300", "GSM1131299", "GSM1131298" ], "type": "tissue", "id": "GDS4918_4" }, { "dataset_id": "GDS4918", "description": "skeletal muscle", "sample_id": [ "GSM1131292", "GSM1131291", "GSM1131290", "GSM1131289", "GSM1131288", "GSM1131307", "GSM1131306", "GSM1131305", "GSM1131304", "GSM1131303" ], "type": "tissue", "id": "GDS4918_5" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4918", "version": 1.0, "instances": "30", "variables": 25182, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4918.tab", "compression": "gz" } ], [ [ "GDS4919.tab" ], { "title": "Models of rhabdomyosarcoma and undifferentiated pleomorphic sarcoma", "description": "Analysis of MyoD-derived sarcomas derived from MDKP (MyoDCE/+; LSL-KrasG12D/+;Trp53Fl/Fl) mice and histological variants (UPS, pleomorphic RMS, and embryonal RMS) from P7KP (Pax7CE/+;LSL-KrasG12D/+;Trp53Fl/Fl) mice. Results provide insight into molecular differences underlying the sarcoma subtypes.", "type": "Expression profiling by array", "pubmed_id": "24239359", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE46836", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4919", "description": "Pax7CE/+;LSL-KrasG12D/+;Trp53Fl/Fl (P7KP)", "sample_id": [ "GSM1139004", "GSM1139005", "GSM1139006", "GSM1139007", "GSM1139008", "GSM1139009", "GSM1139010", "GSM1139011", "GSM1139012", "GSM1139013", "GSM1139014", "GSM1139015", "GSM1139016", "GSM1139017", "GSM1139018", "GSM1139019", "GSM1139020", "GSM1139021", "GSM1139022", "GSM1139023" ], "type": "genotype/variation", "id": "GDS4919_1" }, { "dataset_id": "GDS4919", "description": "MyoDCE/+; LSL-KrasG12D/+;Trp53Fl/Fl (MDKP)", "sample_id": [ "GSM1139024", "GSM1139025", "GSM1139026", "GSM1139027", "GSM1139028", "GSM1139029", "GSM1139030" ], "type": "genotype/variation", "id": "GDS4919_2" }, { "dataset_id": "GDS4919", "description": "pleomorphic RMS", "sample_id": [ "GSM1139004", "GSM1139005", "GSM1139006", "GSM1139007", "GSM1139008", "GSM1139009" ], "type": "disease state", "id": "GDS4919_3" }, { "dataset_id": "GDS4919", "description": "embryonal RMS", "sample_id": [ "GSM1139010", "GSM1139011", "GSM1139012", "GSM1139013", "GSM1139014", "GSM1139015", "GSM1139016" ], "type": "disease state", "id": "GDS4919_4" }, { "dataset_id": "GDS4919", "description": "undifferentiated pleomorphic sarcoma", "sample_id": [ "GSM1139017", "GSM1139018", "GSM1139019", "GSM1139020", "GSM1139021", "GSM1139022", "GSM1139023" ], "type": "disease state", "id": "GDS4919_5" }, { "dataset_id": "GDS4919", "description": "MyoD-derived sarcoma", "sample_id": [ "GSM1139024", "GSM1139025", "GSM1139026", "GSM1139027", "GSM1139028", "GSM1139029", "GSM1139030" ], "type": "disease state", "id": "GDS4919_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4919", "version": 1.0, "instances": "27", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4919.tab", "compression": "gz" } ], [ [ "GDS4920.tab" ], { "title": "Electric pulse stimulation in vitro exercise model: primary myotubes", "description": "Analysis of primary myotubes following electric pulse stimulation (EPS) for 24hr. The EPS conditions mimic an acute endurance exercise bout. Results provide insight into the molecular response of skeletal muscle to exercise.", "type": "Expression profiling by array", "pubmed_id": "23926130", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE44051", "order": "none", "update_date": "May 04 2015", "subsets": [ { "dataset_id": "GDS4920", "description": "electric pulse stimulated", "sample_id": [ "GSM1077239", "GSM1077240", "GSM1077241", "GSM1077242", "GSM1077243", "GSM1077244", "GSM1077245", "GSM1077246", "GSM1077247", "GSM1077248", "GSM1077249", "GSM1077250" ], "type": "protocol", "id": "GDS4920_1" }, { "dataset_id": "GDS4920", "description": "control", "sample_id": [ "GSM1077251", "GSM1077252", "GSM1077253", "GSM1077254", "GSM1077255", "GSM1077256", "GSM1077257", "GSM1077258", "GSM1077259", "GSM1077260", "GSM1077261", "GSM1077262" ], "type": "protocol", "id": "GDS4920_2" }, { "dataset_id": "GDS4920", "description": "individual 01", "sample_id": [ "GSM1077239", "GSM1077251" ], "type": "individual", "id": "GDS4920_3" }, { "dataset_id": "GDS4920", "description": "individual 02", "sample_id": [ "GSM1077252", "GSM1077240" ], "type": "individual", "id": "GDS4920_4" }, { "dataset_id": "GDS4920", "description": "individual 03", "sample_id": [ "GSM1077241", "GSM1077253" ], "type": "individual", "id": "GDS4920_5" }, { "dataset_id": "GDS4920", "description": "individual 04", "sample_id": [ "GSM1077254", "GSM1077242" ], "type": "individual", "id": "GDS4920_6" }, { "dataset_id": "GDS4920", "description": "individual 05", "sample_id": [ "GSM1077243", "GSM1077255" ], "type": "individual", "id": "GDS4920_7" }, { "dataset_id": "GDS4920", "description": "individual 06", "sample_id": [ "GSM1077256", "GSM1077244" ], "type": "individual", "id": "GDS4920_8" }, { "dataset_id": "GDS4920", "description": "individual 07", "sample_id": [ "GSM1077245", "GSM1077257" ], "type": "individual", "id": "GDS4920_9" }, { "dataset_id": "GDS4920", "description": "individual 08", "sample_id": [ "GSM1077258", "GSM1077246" ], "type": "individual", "id": "GDS4920_10" }, { "dataset_id": "GDS4920", "description": "individual 09", "sample_id": [ "GSM1077247", "GSM1077259" ], "type": "individual", "id": "GDS4920_11" }, { "dataset_id": "GDS4920", "description": "individual 10", "sample_id": [ "GSM1077260", "GSM1077248" ], "type": "individual", "id": "GDS4920_12" }, { "dataset_id": "GDS4920", "description": "individual 11", "sample_id": [ "GSM1077249", "GSM1077261" ], "type": "individual", "id": "GDS4920_13" }, { "dataset_id": "GDS4920", "description": "individual 12", "sample_id": [ "GSM1077262", "GSM1077250" ], "type": "individual", "id": "GDS4920_14" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4920", "version": 1.0, "instances": "24", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4920.tab", "compression": "gz" } ], [ [ "GDS4921.tab" ], { "title": "Embryonic anterior and posterior palate", "description": "Analysis of anterior and posterior portions of the palate from wild-type animals at embryonic day 15.5. Results, together with those from GDS5644, provide insight into the role of Transforming growth factor, beta (TGF\u03b2) signaling across the soft palate during development.", "type": "Expression profiling by array", "pubmed_id": "24496627", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46211", "order": "none", "update_date": "Oct 05 2015", "subsets": [ { "dataset_id": "GDS4921", "description": "anterior palate", "sample_id": [ "GSM1126414", "GSM1126415", "GSM1126416", "GSM1126417", "GSM1126418", "GSM1126419" ], "type": "tissue", "id": "GDS4921_1" }, { "dataset_id": "GDS4921", "description": "posterior palate", "sample_id": [ "GSM1126420", "GSM1126421", "GSM1126422", "GSM1126423", "GSM1126424", "GSM1126425" ], "type": "tissue", "id": "GDS4921_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4921", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4921.tab", "compression": "gz" } ], [ [ "GDS4922.tab" ], { "title": "Caspase-1 deficiency effect on fasted liver", "description": "Analysis of liver from Casp1-null, C57BL/6 males in a fasted state. Caspase-1 is a cysteine protease that activates the proinflammatory cytokines IL-1\u03b2 and IL-18. These results, together with those from GDS6176, provide insight into the role of caspase-1 in lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "23160218", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE32515", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4922", "description": "Caspase-1 null", "sample_id": [ "GSM805260", "GSM805259", "GSM805258" ], "type": "genotype/variation", "id": "GDS4922_1" }, { "dataset_id": "GDS4922", "description": "wild type", "sample_id": [ "GSM805257", "GSM805256", "GSM805255" ], "type": "genotype/variation", "id": "GDS4922_2" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS4922", "version": 1.0, "instances": "6", "variables": 25181, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4922.tab", "compression": "gz" } ], [ [ "GDS4923.tab" ], { "title": "Progesterone receptor modulator asoprisnil effect on endometrium: dose response", "description": "Analysis of endometrial tissue collected at hysterectomy from women with symptomatic uterine fibroids who were treated orally with up to 25 mg asoprisnil once daily for 12 wks until hysterectomy. Results provide insight into the molecular basis of endometrial bleeding suppression by asoprisnil.", "type": "Expression profiling by array", "pubmed_id": "23913972", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE47577", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4923", "description": "placebo", "sample_id": [ "GSM1152652", "GSM1152647", "GSM1152638", "GSM1152632", "GSM1152629", "GSM1152626" ], "type": "agent", "id": "GDS4923_1" }, { "dataset_id": "GDS4923", "description": "asoprisnil", "sample_id": [ "GSM1152650", "GSM1152649", "GSM1152645", "GSM1152643", "GSM1152641", "GSM1152639", "GSM1152635", "GSM1152633", "GSM1152630", "GSM1152628", "GSM1152651", "GSM1152646", "GSM1152644", "GSM1152642", "GSM1152640", "GSM1152637", "GSM1152636", "GSM1152634", "GSM1152631", "GSM1152627", "GSM1152625" ], "type": "agent", "id": "GDS4923_2" }, { "dataset_id": "GDS4923", "description": "control", "sample_id": [ "GSM1152652", "GSM1152647", "GSM1152638", "GSM1152632", "GSM1152629", "GSM1152626" ], "type": "dose", "id": "GDS4923_3" }, { "dataset_id": "GDS4923", "description": "10 mg", "sample_id": [ "GSM1152651", "GSM1152646", "GSM1152644", "GSM1152642", "GSM1152640", "GSM1152637", "GSM1152636", "GSM1152634", "GSM1152631", "GSM1152627", "GSM1152625" ], "type": "dose", "id": "GDS4923_4" }, { "dataset_id": "GDS4923", "description": "25 mg", "sample_id": [ "GSM1152650", "GSM1152628", "GSM1152630", "GSM1152633", "GSM1152639", "GSM1152635", "GSM1152649", "GSM1152645", "GSM1152643", "GSM1152641" ], "type": "dose", "id": "GDS4923_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4923", "version": 1.0, "instances": "27", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4923.tab", "compression": "gz" } ], [ [ "GDS4924.tab" ], { "title": "Glycerol-induced and cardiotoxin-induced models of skeletal muscle regeneration: time course", "description": "Analysis of tibialis anterior (TA) muscle of 12 wk old C57BL/6J males injected with glycerol or cardiotoxin (CTX). TA muscle was collected up to 21 days after injection. Results provide insight into the molecular mechanisms underlying skeletal muscle regeneration.", "type": "Expression profiling by array", "pubmed_id": "23976982", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE45577", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4924", "description": "control", "sample_id": [ "GSM1109954", "GSM1109955", "GSM1109956", "GSM1109957", "GSM1109958" ], "type": "protocol", "id": "GDS4924_1" }, { "dataset_id": "GDS4924", "description": "glycerol injected", "sample_id": [ "GSM1109959", "GSM1109960", "GSM1109961", "GSM1109962", "GSM1109963", "GSM1109964", "GSM1109965", "GSM1109966", "GSM1109967", "GSM1109968", "GSM1109969", "GSM1109970", "GSM1109971", "GSM1109972", "GSM1109973", "GSM1109974", "GSM1109975", "GSM1109976", "GSM1109977", "GSM1109978", "GSM1109979", "GSM1109980" ], "type": "protocol", "id": "GDS4924_2" }, { "dataset_id": "GDS4924", "description": "cardiotoxin injected", "sample_id": [ "GSM1109981", "GSM1109982", "GSM1109983", "GSM1109984", "GSM1109985", "GSM1109986", "GSM1109987", "GSM1109988", "GSM1109989", "GSM1109990", "GSM1109991", "GSM1109992", "GSM1109993", "GSM1109994", "GSM1109995", "GSM1109996", "GSM1109997", "GSM1109998", "GSM1109999", "GSM1110000", "GSM1110001" ], "type": "protocol", "id": "GDS4924_3" }, { "dataset_id": "GDS4924", "description": "control", "sample_id": [ "GSM1109954", "GSM1109955", "GSM1109956", "GSM1109957", "GSM1109958" ], "type": "time", "id": "GDS4924_4" }, { "dataset_id": "GDS4924", "description": "3 days", "sample_id": [ "GSM1109959", "GSM1109960", "GSM1109961", "GSM1109962", "GSM1109963", "GSM1109964", "GSM1109981", "GSM1109982", "GSM1109983", "GSM1109984" ], "type": "time", "id": "GDS4924_5" }, { "dataset_id": "GDS4924", "description": "7 days", "sample_id": [ "GSM1109965", "GSM1109966", "GSM1109967", "GSM1109968", "GSM1109969", "GSM1109970", "GSM1109985", "GSM1109986", "GSM1109987", "GSM1109988", "GSM1109989" ], "type": "time", "id": "GDS4924_6" }, { "dataset_id": "GDS4924", "description": "14 days", "sample_id": [ "GSM1109971", "GSM1109972", "GSM1109973", "GSM1109974", "GSM1109975", "GSM1109990", "GSM1109991", "GSM1109992", "GSM1109993", "GSM1109994", "GSM1109995" ], "type": "time", "id": "GDS4924_7" }, { "dataset_id": "GDS4924", "description": "21 days", "sample_id": [ "GSM1109976", "GSM1109977", "GSM1109978", "GSM1109979", "GSM1109980", "GSM1109996", "GSM1109997", "GSM1109998", "GSM1109999", "GSM1110000", "GSM1110001" ], "type": "time", "id": "GDS4924_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4924", "version": 1.0, "instances": "48", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4924.tab", "compression": "gz" } ], [ [ "GDS4925.tab" ], { "title": "Age-related hearing loss model: cochlea", "description": "Analysis of cochlea from old CBA females and males with mild or severe age-related hearing loss (presbycusis). The CBA strain it loses its hearing progressively over its lifetime. Results provide insight into the molecular mechanisms underlying presbycusis.", "type": "Expression profiling by array", "pubmed_id": [ "18455804", "24587312" ], "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "41", "value_type": "transformed count", "reference_series": "GSE49543", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS4925", "description": "female", "sample_id": [ "GSM1201565", "GSM1201566", "GSM1201567", "GSM1201572", "GSM1201574", "GSM1201575", "GSM1201576", "GSM1201577", "GSM1201582", "GSM1201583", "GSM1201584", "GSM1201585", "GSM1201586", "GSM1201587", "GSM1201591", "GSM1201592", "GSM1201594", "GSM1201595", "GSM1201600", "GSM1201601", "GSM1201603", "GSM1201605" ], "type": "gender", "id": "GDS4925_1" }, { "dataset_id": "GDS4925", "description": "male", "sample_id": [ "GSM1201568", "GSM1201569", "GSM1201570", "GSM1201571", "GSM1201573", "GSM1201578", "GSM1201579", "GSM1201580", "GSM1201581", "GSM1201588", "GSM1201589", "GSM1201590", "GSM1201593", "GSM1201596", "GSM1201597", "GSM1201598", "GSM1201599", "GSM1201602", "GSM1201604" ], "type": "gender", "id": "GDS4925_2" }, { "dataset_id": "GDS4925", "description": "young", "sample_id": [ "GSM1201565", "GSM1201566", "GSM1201567", "GSM1201568", "GSM1201569", "GSM1201570", "GSM1201571", "GSM1201572", "GSM1201573" ], "type": "age", "id": "GDS4925_3" }, { "dataset_id": "GDS4925", "description": "middle-aged", "sample_id": [ "GSM1201574", "GSM1201575", "GSM1201576", "GSM1201577", "GSM1201578", "GSM1201579", "GSM1201580", "GSM1201581", "GSM1201582", "GSM1201583", "GSM1201584", "GSM1201585", "GSM1201586", "GSM1201587", "GSM1201588", "GSM1201589", "GSM1201590" ], "type": "age", "id": "GDS4925_4" }, { "dataset_id": "GDS4925", "description": "old", "sample_id": [ "GSM1201591", "GSM1201592", "GSM1201593", "GSM1201594", "GSM1201595", "GSM1201596", "GSM1201597", "GSM1201598", "GSM1201599", "GSM1201600", "GSM1201601", "GSM1201602", "GSM1201603", "GSM1201604", "GSM1201605" ], "type": "age", "id": "GDS4925_5" }, { "dataset_id": "GDS4925", "description": "control", "sample_id": [ "GSM1201565", "GSM1201566", "GSM1201567", "GSM1201568", "GSM1201569", "GSM1201570", "GSM1201571", "GSM1201572", "GSM1201573" ], "type": "disease state", "id": "GDS4925_6" }, { "dataset_id": "GDS4925", "description": "control", "sample_id": [ "GSM1201574", "GSM1201575", "GSM1201576", "GSM1201577", "GSM1201578", "GSM1201579", "GSM1201580", "GSM1201581", "GSM1201582", "GSM1201583", "GSM1201584", "GSM1201585", "GSM1201586", "GSM1201587", "GSM1201588", "GSM1201589", "GSM1201590" ], "type": "disease state", "id": "GDS4925_7" }, { "dataset_id": "GDS4925", "description": "mild presbycusis", "sample_id": [ "GSM1201591", "GSM1201592", "GSM1201593", "GSM1201594", "GSM1201595", "GSM1201596", "GSM1201597", "GSM1201598", "GSM1201599" ], "type": "disease state", "id": "GDS4925_8" }, { "dataset_id": "GDS4925", "description": "severe presbycusis", "sample_id": [ "GSM1201600", "GSM1201601", "GSM1201602", "GSM1201603", "GSM1201604", "GSM1201605" ], "type": "disease state", "id": "GDS4925_9" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4925", "version": 1.0, "instances": "41", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4925.tab", "compression": "gz" } ], [ [ "GDS4926.tab" ], { "title": "Bisphenol A effect on endometrial cell line: time course and dose response", "description": "Temporal analysis of Ishikawa endometrial cells treated with various concentrations of bishpenol A (BPA). BPA is a very weak environmental estrogen given its low estrogen receptor affinity. Ishikawa cells represent a model to study the endometrial epithelium response to estrogen exposure in vitro.", "type": "Expression profiling by array", "pubmed_id": "20170705", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "count", "reference_series": "GSE17624", "order": "none", "update_date": "Apr 24 2015", "subsets": [ { "dataset_id": "GDS4926", "description": "vehicle", "sample_id": [ "GSM439987", "GSM439988", "GSM439989", "GSM439990", "GSM439991", "GSM439992", "GSM439993", "GSM439994", "GSM439995", "GSM439996", "GSM439997", "GSM439998" ], "type": "agent", "id": "GDS4926_1" }, { "dataset_id": "GDS4926", "description": "BPA", "sample_id": [ "GSM439999", "GSM440000", "GSM440001", "GSM440002", "GSM440003", "GSM440004", "GSM440005", "GSM440006", "GSM440007", "GSM440008", "GSM440009", "GSM440010", "GSM440011", "GSM440012", "GSM440013", "GSM440014", "GSM440015", "GSM440016", "GSM440017", "GSM440018", "GSM440019", "GSM440020", "GSM440021", "GSM440022", "GSM440023", "GSM440024", "GSM440025", "GSM440026", "GSM440027", "GSM440028", "GSM440029", "GSM440030", "GSM440031", "GSM440032", "GSM440033", "GSM440034", "GSM440035", "GSM440036", "GSM440037", "GSM440038", "GSM440039", "GSM440040", "GSM440041", "GSM440042", "GSM440043", "GSM440044", "GSM440045", "GSM440046" ], "type": "agent", "id": "GDS4926_2" }, { "dataset_id": "GDS4926", "description": "8 h", "sample_id": [ "GSM439987", "GSM439988", "GSM439989", "GSM439990", "GSM439999", "GSM440000", "GSM440001", "GSM440002", "GSM440011", "GSM440012", "GSM440013", "GSM440014", "GSM440023", "GSM440024", "GSM440025", "GSM440026", "GSM440035", "GSM440036", "GSM440037", "GSM440038" ], "type": "time", "id": "GDS4926_3" }, { "dataset_id": "GDS4926", "description": "24 h", "sample_id": [ "GSM439991", "GSM439992", "GSM439993", "GSM439994", "GSM440003", "GSM440004", "GSM440005", "GSM440006", "GSM440015", "GSM440016", "GSM440017", "GSM440018", "GSM440027", "GSM440028", "GSM440029", "GSM440030", "GSM440039", "GSM440040", "GSM440041", "GSM440042" ], "type": "time", "id": "GDS4926_4" }, { "dataset_id": "GDS4926", "description": "48 h", "sample_id": [ "GSM439995", "GSM439996", "GSM439997", "GSM439998", "GSM440007", "GSM440008", "GSM440009", "GSM440010", "GSM440019", "GSM440020", "GSM440021", "GSM440022", "GSM440031", "GSM440032", "GSM440033", "GSM440034", "GSM440043", "GSM440044", "GSM440045", "GSM440046" ], "type": "time", "id": "GDS4926_5" }, { "dataset_id": "GDS4926", "description": "control", "sample_id": [ "GSM439987", "GSM439988", "GSM439989", "GSM439990", "GSM439991", "GSM439992", "GSM439993", "GSM439994", "GSM439995", "GSM439996", "GSM439997", "GSM439998" ], "type": "dose", "id": "GDS4926_6" }, { "dataset_id": "GDS4926", "description": "1 pM", "sample_id": [ "GSM440035", "GSM440036", "GSM440037", "GSM440038", "GSM440039", "GSM440040", "GSM440041", "GSM440042", "GSM440043", "GSM440044", "GSM440045", "GSM440046" ], "type": "dose", "id": "GDS4926_7" }, { "dataset_id": "GDS4926", "description": "100 pM", "sample_id": [ "GSM440011", "GSM440012", "GSM440013", "GSM440014", "GSM440015", "GSM440016", "GSM440017", "GSM440018", "GSM440019", "GSM440020", "GSM440021", "GSM440022" ], "type": "dose", "id": "GDS4926_8" }, { "dataset_id": "GDS4926", "description": "10 nM", "sample_id": [ "GSM439999", "GSM440000", "GSM440001", "GSM440002", "GSM440003", "GSM440004", "GSM440005", "GSM440006", "GSM440007", "GSM440008", "GSM440009", "GSM440010" ], "type": "dose", "id": "GDS4926_9" }, { "dataset_id": "GDS4926", "description": "1 uM", "sample_id": [ "GSM440023", "GSM440024", "GSM440025", "GSM440026", "GSM440027", "GSM440028", "GSM440029", "GSM440030", "GSM440031", "GSM440032", "GSM440033", "GSM440034" ], "type": "dose", "id": "GDS4926_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4926", "version": 1.0, "instances": "60", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4926.tab", "compression": "gz" } ], [ [ "GDS4928.tab" ], { "title": "Acetaminophen effect on thioredoxin reductase 1-null liver", "description": "Analysis of liver from hepatocyte-specific, thioredoxin reductase 1 (TrxR1)-null mutants treated with the pro-toxin acetaminophen. The Trx system impacts bioenergetics and drug metabolism. Results provide insight into the role of the Trx system in detoxifying certain xenobiotic challenges.", "type": "Expression profiling by array", "pubmed_id": "23743293", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE37874", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4928", "description": "wild type", "sample_id": [ "GSM929282", "GSM929283", "GSM929284", "GSM929285", "GSM929286", "GSM929287" ], "type": "genotype/variation", "id": "GDS4928_1" }, { "dataset_id": "GDS4928", "description": "txnrd1 liver-null", "sample_id": [ "GSM929288", "GSM929289", "GSM929290", "GSM929291", "GSM929292", "GSM929293" ], "type": "genotype/variation", "id": "GDS4928_2" }, { "dataset_id": "GDS4928", "description": "vehicle", "sample_id": [ "GSM929282", "GSM929283", "GSM929284", "GSM929288", "GSM929289", "GSM929290" ], "type": "protocol", "id": "GDS4928_3" }, { "dataset_id": "GDS4928", "description": "acetaminophen", "sample_id": [ "GSM929285", "GSM929286", "GSM929287", "GSM929291", "GSM929292", "GSM929293" ], "type": "protocol", "id": "GDS4928_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4928", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4928.tab", "compression": "gz" } ], [ [ "GDS493.tab" ], { "title": "Cystic fibrosis pathology and 4-phenylbutyrate (HG-U133A)", "description": "Effect of 1mM 4-phenylbutyrate (PBA) at 0, 12 and 24 hours in cystic fibrosis bronchial epithelial model cell line IB3-1. PBA modulates heat shock protein and promotes trafficking of deltaF508 cystic fibrosis transmembrane conductance regulator (CFTR).", "type": "Expression profiling by array", "pubmed_id": "14583596", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE620", "order": "ordered", "update_date": "Dec 04 2003", "subsets": [ { "dataset_id": "GDS493", "description": "0 hour", "sample_id": [ "GSM9514", "GSM9515", "GSM9516", "GSM9517", "GSM9522" ], "type": "time", "id": "GDS493_1" }, { "dataset_id": "GDS493", "description": "12 hour", "sample_id": [ "GSM9524", "GSM9525", "GSM9526" ], "type": "time", "id": "GDS493_2" }, { "dataset_id": "GDS493", "description": "24 hour", "sample_id": [ "GSM9530", "GSM9532", "GSM9534" ], "type": "time", "id": "GDS493_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS493", "version": 1.0, "instances": "11", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS493.tab", "compression": "gz" } ], [ [ "GDS4930.tab" ], { "title": "Fetal lung development", "description": "Analysis of lung tissues at 53 to 154 days post conception. Results provide insight into the molecular regulation of lung development.", "type": "Expression profiling by array", "pubmed_id": [ "19815808", "24929828" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE14334", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4930", "description": "53 dpc", "sample_id": [ "GSM358668" ], "type": "time", "id": "GDS4930_1" }, { "dataset_id": "GDS4930", "description": "59 dpc", "sample_id": [ "GSM358657" ], "type": "time", "id": "GDS4930_2" }, { "dataset_id": "GDS4930", "description": "63 dpc", "sample_id": [ "GSM358634", "GSM358633" ], "type": "time", "id": "GDS4930_3" }, { "dataset_id": "GDS4930", "description": "72 dpc", "sample_id": [ "GSM358638" ], "type": "time", "id": "GDS4930_4" }, { "dataset_id": "GDS4930", "description": "74 dpc", "sample_id": [ "GSM358656" ], "type": "time", "id": "GDS4930_5" }, { "dataset_id": "GDS4930", "description": "76 dpc", "sample_id": [ "GSM358637", "GSM358631" ], "type": "time", "id": "GDS4930_6" }, { "dataset_id": "GDS4930", "description": "78 dpc", "sample_id": [ "GSM358650" ], "type": "time", "id": "GDS4930_7" }, { "dataset_id": "GDS4930", "description": "82 dpc", "sample_id": [ "GSM358667" ], "type": "time", "id": "GDS4930_8" }, { "dataset_id": "GDS4930", "description": "83 dpc", "sample_id": [ "GSM358654" ], "type": "time", "id": "GDS4930_9" }, { "dataset_id": "GDS4930", "description": "85 dpc", "sample_id": [ "GSM358660" ], "type": "time", "id": "GDS4930_10" }, { "dataset_id": "GDS4930", "description": "87 dpc", "sample_id": [ "GSM358652" ], "type": "time", "id": "GDS4930_11" }, { "dataset_id": "GDS4930", "description": "89 dpc", "sample_id": [ "GSM358651" ], "type": "time", "id": "GDS4930_12" }, { "dataset_id": "GDS4930", "description": "91 dpc", "sample_id": [ "GSM358665" ], "type": "time", "id": "GDS4930_13" }, { "dataset_id": "GDS4930", "description": "94 dpc", "sample_id": [ "GSM358666" ], "type": "time", "id": "GDS4930_14" }, { "dataset_id": "GDS4930", "description": "96 dpc", "sample_id": [ "GSM358658" ], "type": "time", "id": "GDS4930_15" }, { "dataset_id": "GDS4930", "description": "98 dpc", "sample_id": [ "GSM358655" ], "type": "time", "id": "GDS4930_16" }, { "dataset_id": "GDS4930", "description": "101 dpc", "sample_id": [ "GSM358662" ], "type": "time", "id": "GDS4930_17" }, { "dataset_id": "GDS4930", "description": "103 dpc", "sample_id": [ "GSM358636" ], "type": "time", "id": "GDS4930_18" }, { "dataset_id": "GDS4930", "description": "105 dpc", "sample_id": [ "GSM358639" ], "type": "time", "id": "GDS4930_19" }, { "dataset_id": "GDS4930", "description": "108 dpc", "sample_id": [ "GSM358663", "GSM358640", "GSM358635" ], "type": "time", "id": "GDS4930_20" }, { "dataset_id": "GDS4930", "description": "110 dpc", "sample_id": [ "GSM358661", "GSM358632" ], "type": "time", "id": "GDS4930_21" }, { "dataset_id": "GDS4930", "description": "113 dpc", "sample_id": [ "GSM358653" ], "type": "time", "id": "GDS4930_22" }, { "dataset_id": "GDS4930", "description": "117 dpc", "sample_id": [ "GSM358664" ], "type": "time", "id": "GDS4930_23" }, { "dataset_id": "GDS4930", "description": "122 dpc", "sample_id": [ "GSM358659" ], "type": "time", "id": "GDS4930_24" }, { "dataset_id": "GDS4930", "description": "130 dpc", "sample_id": [ "GSM358645" ], "type": "time", "id": "GDS4930_25" }, { "dataset_id": "GDS4930", "description": "133 dpc", "sample_id": [ "GSM358649", "GSM358648", "GSM358646", "GSM358644" ], "type": "time", "id": "GDS4930_26" }, { "dataset_id": "GDS4930", "description": "134 dpc", "sample_id": [ "GSM358643" ], "type": "time", "id": "GDS4930_27" }, { "dataset_id": "GDS4930", "description": "140 dpc", "sample_id": [ "GSM358647", "GSM358641" ], "type": "time", "id": "GDS4930_28" }, { "dataset_id": "GDS4930", "description": "154 dpc", "sample_id": [ "GSM358642" ], "type": "time", "id": "GDS4930_29" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4930", "version": 1.0, "instances": "38", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4930.tab", "compression": "gz" } ], [ [ "GDS4931.tab" ], { "title": "Macrophage response to to Staphylococcus aureus infection in vitro: time course", "description": "Analysis of monocyte-derived macrophages that phagocytosed S. aureus in vitro. Monocytes analyzed for up to 48 hours after phagocytosis. Results provide insight into the molecular mechanisms employed by S. aureus to prolong their intracellular survival.", "type": "Expression profiling by array", "pubmed_id": "19381294", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE13670", "order": "none", "update_date": "Apr 23 2015", "subsets": [ { "dataset_id": "GDS4931", "description": "control", "sample_id": [ "GSM343804", "GSM343810", "GSM343816", "GSM343822", "GSM343828", "GSM343806", "GSM343812", "GSM343818", "GSM343824", "GSM343830", "GSM343802", "GSM343808", "GSM343814", "GSM343820", "GSM343826" ], "type": "infection", "id": "GDS4931_1" }, { "dataset_id": "GDS4931", "description": "S. aureus", "sample_id": [ "GSM343805", "GSM343811", "GSM343817", "GSM343823", "GSM343829", "GSM343807", "GSM343813", "GSM343819", "GSM343825", "GSM343831", "GSM343803", "GSM343809", "GSM343815", "GSM343821", "GSM343827" ], "type": "infection", "id": "GDS4931_2" }, { "dataset_id": "GDS4931", "description": "8 h", "sample_id": [ "GSM343803", "GSM343809", "GSM343815", "GSM343821", "GSM343827", "GSM343802", "GSM343808", "GSM343814", "GSM343820", "GSM343826" ], "type": "time", "id": "GDS4931_3" }, { "dataset_id": "GDS4931", "description": "24 h", "sample_id": [ "GSM343805", "GSM343811", "GSM343817", "GSM343823", "GSM343829", "GSM343804", "GSM343810", "GSM343816", "GSM343822", "GSM343828" ], "type": "time", "id": "GDS4931_4" }, { "dataset_id": "GDS4931", "description": "48 h", "sample_id": [ "GSM343807", "GSM343813", "GSM343819", "GSM343825", "GSM343831", "GSM343806", "GSM343812", "GSM343818", "GSM343824", "GSM343830" ], "type": "time", "id": "GDS4931_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4931", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4931.tab", "compression": "gz" } ], [ [ "GDS4932.tab" ], { "title": "Synergist ablation effect on young adult plantaris muscle: time course", "description": "Analysis of right and left plantaris muscle from young males (5 months old) subjected to 1, 3, 5, 7, 10 and 14 days of synergist ablation surgery to induce hypertrophy. Results provide insight into the molecular response of young skeletal muscle to mechanical overload induced by synergist ablation.", "type": "Expression profiling by array", "pubmed_id": [ "23869057", "25554798", "26048973" ], "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE47098", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4932", "description": "control", "sample_id": [ "GSM1144755", "GSM1144754" ], "type": "stress", "id": "GDS4932_1" }, { "dataset_id": "GDS4932", "description": "synergist ablation", "sample_id": [ "GSM1144757", "GSM1144759", "GSM1144761", "GSM1144763", "GSM1144765", "GSM1144767", "GSM1144756", "GSM1144758", "GSM1144760", "GSM1144762", "GSM1144764", "GSM1144766" ], "type": "stress", "id": "GDS4932_2" }, { "dataset_id": "GDS4932", "description": "day 0", "sample_id": [ "GSM1144754", "GSM1144755" ], "type": "time", "id": "GDS4932_3" }, { "dataset_id": "GDS4932", "description": "day 1", "sample_id": [ "GSM1144756", "GSM1144757" ], "type": "time", "id": "GDS4932_4" }, { "dataset_id": "GDS4932", "description": "day 3", "sample_id": [ "GSM1144758", "GSM1144759" ], "type": "time", "id": "GDS4932_5" }, { "dataset_id": "GDS4932", "description": "day 5", "sample_id": [ "GSM1144760", "GSM1144761" ], "type": "time", "id": "GDS4932_6" }, { "dataset_id": "GDS4932", "description": "day 7", "sample_id": [ "GSM1144762", "GSM1144763" ], "type": "time", "id": "GDS4932_7" }, { "dataset_id": "GDS4932", "description": "day 10", "sample_id": [ "GSM1144764", "GSM1144765" ], "type": "time", "id": "GDS4932_8" }, { "dataset_id": "GDS4932", "description": "day 14", "sample_id": [ "GSM1144766", "GSM1144767" ], "type": "time", "id": "GDS4932_9" }, { "dataset_id": "GDS4932", "description": "left plantaris muscle", "sample_id": [ "GSM1144755", "GSM1144757", "GSM1144765", "GSM1144767", "GSM1144759", "GSM1144761", "GSM1144763" ], "type": "tissue", "id": "GDS4932_10" }, { "dataset_id": "GDS4932", "description": "right plantaris muscle", "sample_id": [ "GSM1144754", "GSM1144756", "GSM1144764", "GSM1144766", "GSM1144758", "GSM1144760", "GSM1144762" ], "type": "tissue", "id": "GDS4932_11" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4932", "version": 1.0, "instances": "14", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4932.tab", "compression": "gz" } ], [ [ "GDS4933.tab" ], { "title": "Gain-of-function model for conditional activation of IKK2/NF-\u03baB in pancreatic beta-cells", "description": "Analysis of islets from 11-week-old Inhibitor of \u03baB kinase 2/pancreatic and duodenal homeobox 1 transgenics. The IKK2/Pdx-1 model allows activation of proinflammatory IKK2/NF-\u03baB signaling, specific to \u03b2-cells. Results provide insight into molecular consequences of NF-\u03baB activation in \u03b2-cells.", "type": "Expression profiling by array", "pubmed_id": "24296718", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE47504", "order": "none", "update_date": "Apr 21 2016", "subsets": [ { "dataset_id": "GDS4933", "description": "IKK2-CA/Pdx-1", "sample_id": [ "GSM1151233", "GSM1151238", "GSM1151240", "GSM1151244", "GSM1151245" ], "type": "genotype/variation", "id": "GDS4933_1" }, { "dataset_id": "GDS4933", "description": "Pdx-1+/-", "sample_id": [ "GSM1151234", "GSM1151237", "GSM1151241", "GSM1151242" ], "type": "genotype/variation", "id": "GDS4933_2" }, { "dataset_id": "GDS4933", "description": "control", "sample_id": [ "GSM1151232", "GSM1151235", "GSM1151236", "GSM1151239", "GSM1151243" ], "type": "genotype/variation", "id": "GDS4933_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4933", "version": 1.0, "instances": "14", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4933.tab", "compression": "gz" } ], [ [ "GDS4934.tab" ], { "title": "Pancreatic and duodenal homeobox 1 deficiency effect on islet \u03b2-cells", "description": "Analysis of pancreatic and duodenal homeobox 1 (Pdx1)-depleted pancreatic islet \u03b2-cells, normal islet \u03b2-cells and \u03b1-cells. Expression of Pdx1 transcription factor becomes limited to \u03b2-cells over the course of pancreas development. Results provide insight into the role of Pdx1 in \u03b2-cells.", "type": "Expression profiling by array", "pubmed_id": "24506867", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE52258", "order": "none", "update_date": "Apr 21 2016", "subsets": [ { "dataset_id": "GDS4934", "description": "islet alpha cell", "sample_id": [ "GSM1261989", "GSM1261990", "GSM1261991", "GSM1261992", "GSM1261993" ], "type": "cell type", "id": "GDS4934_1" }, { "dataset_id": "GDS4934", "description": "islet beta cell", "sample_id": [ "GSM1261984", "GSM1261985", "GSM1261986", "GSM1261987", "GSM1261988", "GSM1261994", "GSM1261995", "GSM1261996", "GSM1261997", "GSM1261998" ], "type": "cell type", "id": "GDS4934_2" }, { "dataset_id": "GDS4934", "description": "control", "sample_id": [ "GSM1261984", "GSM1261985", "GSM1261986", "GSM1261987", "GSM1261988", "GSM1261989", "GSM1261990", "GSM1261991", "GSM1261992", "GSM1261993" ], "type": "genotype/variation", "id": "GDS4934_3" }, { "dataset_id": "GDS4934", "description": "Pdx1 deletion", "sample_id": [ "GSM1261994", "GSM1261995", "GSM1261996", "GSM1261997", "GSM1261998" ], "type": "genotype/variation", "id": "GDS4934_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4934", "version": 1.0, "instances": "15", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4934.tab", "compression": "gz" } ], [ [ "GDS4935.tab" ], { "title": "Pancreatic and duodenal homeobox 1 overexpression effect on primary pancreatic islets", "description": "Analysis of primary islets transduced with adenovirus overexpressing pancreatic and duodenal homeobox 1 (Pdx-1). Homeodomain transcription factor Pdx-1 has key roles in pancreatic development and \u03b2-cell function. Results provide further insight into the role of Pdx-1 in pancreatic islets.", "type": "Expression profiling by array", "pubmed_id": "23938296", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE49786", "order": "none", "update_date": "Apr 25 2016", "subsets": [ { "dataset_id": "GDS4935", "description": "untreated", "sample_id": [ "GSM1207000", "GSM1207003", "GSM1207006", "GSM1207009", "GSM1207012" ], "type": "genotype/variation", "id": "GDS4935_1" }, { "dataset_id": "GDS4935", "description": "\u03b2-gal overexpression", "sample_id": [ "GSM1207001", "GSM1207004", "GSM1207007", "GSM1207010", "GSM1207013" ], "type": "genotype/variation", "id": "GDS4935_2" }, { "dataset_id": "GDS4935", "description": "Pdx-1 overexpression", "sample_id": [ "GSM1207002", "GSM1207005", "GSM1207008", "GSM1207011", "GSM1207014" ], "type": "genotype/variation", "id": "GDS4935_3" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4935", "version": 1.0, "instances": "15", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4935.tab", "compression": "gz" } ], [ [ "GDS4936.tab" ], { "title": "Nucleoside analog ARC effect on breast cancer cell line", "description": "Analysis of MCF-7 breast cancer cells treated with the nucleoside analog ARC (NSC 188491). ARC inhibits transcription and selectively kills cancer cells. It has the ability to perturb angiogenesis in vitro. Results provide further insight into the mechanism of action of ARC.", "type": "Expression profiling by array", "pubmed_id": "19232100", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE13477", "order": "none", "update_date": "May 28 2014", "subsets": [ { "dataset_id": "GDS4936", "description": "none", "sample_id": [ "GSM339721", "GSM339722" ], "type": "agent", "id": "GDS4936_1" }, { "dataset_id": "GDS4936", "description": "ARC", "sample_id": [ "GSM339723", "GSM339724" ], "type": "agent", "id": "GDS4936_2" }, { "dataset_id": "GDS4936", "description": "Sangivamycin", "sample_id": [ "GSM339725", "GSM339726" ], "type": "agent", "id": "GDS4936_3" }, { "dataset_id": "GDS4936", "description": "Doxorubicin", "sample_id": [ "GSM339727", "GSM339765" ], "type": "agent", "id": "GDS4936_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4936", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4936.tab", "compression": "gz" } ], [ [ "GDS4937.tab" ], { "title": "Neonatal and adult pancreatic beta cells", "description": "Analysis of \u03b2-cells from neonatal (postnatal day 2-3) and adult (10 wk old) Wistar rats. Neonatal \u03b2-cells are developmentally immature and, therefore, less glucose responsive. Results provide insight into molecular mechanisms underlying the acquisition of mature glucose responsiveness.", "type": "Expression profiling by array", "pubmed_id": "24049066", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE47174", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4937", "description": "2-3 day neonate", "sample_id": [ "GSM1146031", "GSM1146032", "GSM1146033", "GSM1146034", "GSM1146035", "GSM1146036" ], "type": "age", "id": "GDS4937_1" }, { "dataset_id": "GDS4937", "description": "10 week adult", "sample_id": [ "GSM1146026", "GSM1146027", "GSM1146028", "GSM1146029", "GSM1146030" ], "type": "age", "id": "GDS4937_2" }, { "dataset_id": "GDS4937", "description": "beta cells", "sample_id": [ "GSM1146026", "GSM1146027", "GSM1146028", "GSM1146029", "GSM1146030", "GSM1146031", "GSM1146032", "GSM1146033" ], "type": "cell type", "id": "GDS4937_3" }, { "dataset_id": "GDS4937", "description": "non-endocrine islet cells", "sample_id": [ "GSM1146034", "GSM1146035", "GSM1146036" ], "type": "cell type", "id": "GDS4937_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4937", "version": 1.0, "instances": "11", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4937.tab", "compression": "gz" } ], [ [ "GDS4938.tab" ], { "title": "Acute alcohol consumption effect on whole blood (alcohol group): time course", "description": "Analysis of blood from subjects administered orange juice with ethanol. Blood collected at Blood Alcohol Concentrations of 0%, 0.04%, 0.08%, declining 0.04% and 0.02%. These results, together with those from GDS6177, provide insight into molecular response of blood during acute ethanol exposure.", "type": "Expression profiling by array", "pubmed_id": "23883607", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE20489", "order": "none", "update_date": "Apr 13 2016", "subsets": [ { "dataset_id": "GDS4938", "description": "S8", "sample_id": [ "GSM514761", "GSM514762", "GSM514763", "GSM514764", "GSM514765" ], "type": "individual", "id": "GDS4938_1" }, { "dataset_id": "GDS4938", "description": "S13", "sample_id": [ "GSM514737", "GSM514738", "GSM514739", "GSM514740", "GSM514741" ], "type": "individual", "id": "GDS4938_2" }, { "dataset_id": "GDS4938", "description": "S15", "sample_id": [ "GSM514742", "GSM514743", "GSM514744", "GSM514745", "GSM514746" ], "type": "individual", "id": "GDS4938_3" }, { "dataset_id": "GDS4938", "description": "S17", "sample_id": [ "GSM514747", "GSM514748", "GSM514749", "GSM514750", "GSM514751" ], "type": "individual", "id": "GDS4938_4" }, { "dataset_id": "GDS4938", "description": "S18", "sample_id": [ "GSM514752", "GSM514753", "GSM514754", "GSM514755" ], "type": "individual", "id": "GDS4938_5" }, { "dataset_id": "GDS4938", "description": "S19", "sample_id": [ "GSM514756", "GSM514757", "GSM514758", "GSM514759", "GSM514760" ], "type": "individual", "id": "GDS4938_6" }, { "dataset_id": "GDS4938", "description": "control", "sample_id": [ "GSM514761", "GSM514737", "GSM514742", "GSM514747", "GSM514752", "GSM514756" ], "type": "protocol", "id": "GDS4938_7" }, { "dataset_id": "GDS4938", "description": "orange juice with ethanol", "sample_id": [ "GSM514762", "GSM514738", "GSM514743", "GSM514748", "GSM514753", "GSM514757", "GSM514763", "GSM514739", "GSM514744", "GSM514749", "GSM514754", "GSM514758", "GSM514764", "GSM514740", "GSM514745", "GSM514750", "GSM514759", "GSM514765", "GSM514741", "GSM514746", "GSM514751", "GSM514755", "GSM514760" ], "type": "protocol", "id": "GDS4938_8" }, { "dataset_id": "GDS4938", "description": "T1 (BAC 0%)", "sample_id": [ "GSM514737", "GSM514742", "GSM514747", "GSM514752", "GSM514756", "GSM514761" ], "type": "time", "id": "GDS4938_9" }, { "dataset_id": "GDS4938", "description": "T2 (BAC 0.04%)", "sample_id": [ "GSM514738", "GSM514743", "GSM514748", "GSM514753", "GSM514757", "GSM514762" ], "type": "time", "id": "GDS4938_10" }, { "dataset_id": "GDS4938", "description": "T3 (BAC 0.08%)", "sample_id": [ "GSM514739", "GSM514744", "GSM514749", "GSM514754", "GSM514758", "GSM514763" ], "type": "time", "id": "GDS4938_11" }, { "dataset_id": "GDS4938", "description": "T4 (BAC 0.04% declining)", "sample_id": [ "GSM514740", "GSM514745", "GSM514750", "GSM514759", "GSM514764" ], "type": "time", "id": "GDS4938_12" }, { "dataset_id": "GDS4938", "description": "T5 (BAC 0.02% declining)", "sample_id": [ "GSM514741", "GSM514746", "GSM514751", "GSM514755", "GSM514760", "GSM514765" ], "type": "time", "id": "GDS4938_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4938", "version": 1.0, "instances": "29", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4938.tab", "compression": "gz" } ], [ [ "GDS4939.tab" ], { "title": "Glucose effect on young and aged pancreatic islets: dose response", "description": "Analysis of islets isolated from young and aged animals and cultured for 2 days at 3 to 16mM glucose (G3 to G16). Freshly-isolated islets were also examined. Ageing is associated with functional changes in beta cells. Results provide insight into the molecular response of aged islets to glucose.", "type": "Expression profiling by array", "pubmed_id": "23685457", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE42591", "order": "none", "update_date": "Apr 15 2016", "subsets": [ { "dataset_id": "GDS4939", "description": "5-weeks-old", "sample_id": [ "GSM1045562", "GSM1045563", "GSM1045564", "GSM1045565", "GSM1045566", "GSM1045567", "GSM1045568", "GSM1045569", "GSM1045570", "GSM1045571", "GSM1045572", "GSM1045573" ], "type": "age", "id": "GDS4939_1" }, { "dataset_id": "GDS4939", "description": "56-weeks-old", "sample_id": [ "GSM1045554", "GSM1045555", "GSM1045556", "GSM1045557", "GSM1045558", "GSM1045559", "GSM1045560", "GSM1045561" ], "type": "age", "id": "GDS4939_2" }, { "dataset_id": "GDS4939", "description": "freshly isolated islets", "sample_id": [ "GSM1045560", "GSM1045561", "GSM1045572", "GSM1045573" ], "type": "protocol", "id": "GDS4939_3" }, { "dataset_id": "GDS4939", "description": "islets cultured in glucose", "sample_id": [ "GSM1045554", "GSM1045555", "GSM1045556", "GSM1045557", "GSM1045558", "GSM1045559", "GSM1045562", "GSM1045563", "GSM1045564", "GSM1045565", "GSM1045566", "GSM1045567", "GSM1045568", "GSM1045569", "GSM1045570", "GSM1045571" ], "type": "protocol", "id": "GDS4939_4" }, { "dataset_id": "GDS4939", "description": "n/a", "sample_id": [ "GSM1045560", "GSM1045561", "GSM1045572", "GSM1045573" ], "type": "dose", "id": "GDS4939_5" }, { "dataset_id": "GDS4939", "description": "3 mM (G3)", "sample_id": [ "GSM1045555", "GSM1045554", "GSM1045563", "GSM1045562" ], "type": "dose", "id": "GDS4939_6" }, { "dataset_id": "GDS4939", "description": "5.5 mM (G5)", "sample_id": [ "GSM1045557", "GSM1045556", "GSM1045565", "GSM1045564" ], "type": "dose", "id": "GDS4939_7" }, { "dataset_id": "GDS4939", "description": "11 mM (G11)", "sample_id": [ "GSM1045559", "GSM1045558", "GSM1045569", "GSM1045568", "GSM1045567", "GSM1045566" ], "type": "dose", "id": "GDS4939_8" }, { "dataset_id": "GDS4939", "description": "16 mM (G16)", "sample_id": [ "GSM1045571", "GSM1045570" ], "type": "dose", "id": "GDS4939_9" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4939", "version": 1.0, "instances": "20", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4939.tab", "compression": "gz" } ], [ [ "GDS494.tab" ], { "title": "Cystic fibrosis pathology and 4-phenylbutyrate (HG-U133B)", "description": "Effect of 1mM 4-phenylbutyrate (PBA) at 0, 12 and 24 hours in cystic fibrosis bronchial epithelial model cell line IB3-1. PBA modulates heat shock protein and promotes trafficking of deltaF508 cystic fibrosis transmembrane conductance regulator (CFTR).", "type": "Expression profiling by array", "pubmed_id": "14583596", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE620", "order": "ordered", "update_date": "Dec 04 2003", "subsets": [ { "dataset_id": "GDS494", "description": "0 hour", "sample_id": [ "GSM9518", "GSM9519", "GSM9520", "GSM9521", "GSM9523" ], "type": "time", "id": "GDS494_1" }, { "dataset_id": "GDS494", "description": "12 hour", "sample_id": [ "GSM9527", "GSM9528", "GSM9529" ], "type": "time", "id": "GDS494_2" }, { "dataset_id": "GDS494", "description": "24 hour", "sample_id": [ "GSM9536", "GSM9537", "GSM9539" ], "type": "time", "id": "GDS494_3" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS494", "version": 1.0, "instances": "11", "variables": 16467, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS494.tab", "compression": "gz" } ], [ [ "GDS4940.tab" ], { "title": "Hippocampus response to acetylcholinesterase inhibitor soman: time course", "description": "Analysis of hippocampi of Sprauge-Dawley males for up to 168 hours following exposure to the acetylcholinesterase inhibitor soman. Soman is a potent neurotoxicant. Results provide insight into the molecular pathogenesis of soman-induced neurodegeneration.", "type": "Expression profiling by array", "pubmed_id": "19281266", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE13428", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS4940", "description": "naive", "sample_id": [ "GSM338857", "GSM338858", "GSM338859" ], "type": "agent", "id": "GDS4940_1" }, { "dataset_id": "GDS4940", "description": "vehicle", "sample_id": [ "GSM338862", "GSM338864", "GSM338877", "GSM338880" ], "type": "agent", "id": "GDS4940_2" }, { "dataset_id": "GDS4940", "description": "soman", "sample_id": [ "GSM338874", "GSM338875", "GSM338876", "GSM338892", "GSM338893", "GSM338894", "GSM338860", "GSM338861", "GSM338863", "GSM338878", "GSM338879", "GSM338881", "GSM338865", "GSM338866", "GSM338867", "GSM338868", "GSM338869", "GSM338870", "GSM338882", "GSM338883", "GSM338884", "GSM338871", "GSM338872", "GSM338873", "GSM338885", "GSM338886", "GSM338887", "GSM338888", "GSM338889", "GSM338890", "GSM338891" ], "type": "agent", "id": "GDS4940_3" }, { "dataset_id": "GDS4940", "description": "control", "sample_id": [ "GSM338857", "GSM338858", "GSM338859", "GSM338862", "GSM338864", "GSM338877", "GSM338880" ], "type": "time", "id": "GDS4940_4" }, { "dataset_id": "GDS4940", "description": "1 h", "sample_id": [ "GSM338860", "GSM338861", "GSM338863" ], "type": "time", "id": "GDS4940_5" }, { "dataset_id": "GDS4940", "description": "3 h", "sample_id": [ "GSM338865", "GSM338866", "GSM338867", "GSM338868", "GSM338869", "GSM338870" ], "type": "time", "id": "GDS4940_6" }, { "dataset_id": "GDS4940", "description": "6 h", "sample_id": [ "GSM338871", "GSM338872", "GSM338873" ], "type": "time", "id": "GDS4940_7" }, { "dataset_id": "GDS4940", "description": "12 h", "sample_id": [ "GSM338874", "GSM338875", "GSM338876" ], "type": "time", "id": "GDS4940_8" }, { "dataset_id": "GDS4940", "description": "24 h", "sample_id": [ "GSM338878", "GSM338879", "GSM338881" ], "type": "time", "id": "GDS4940_9" }, { "dataset_id": "GDS4940", "description": "48 h", "sample_id": [ "GSM338882", "GSM338883", "GSM338884" ], "type": "time", "id": "GDS4940_10" }, { "dataset_id": "GDS4940", "description": "72 h", "sample_id": [ "GSM338885", "GSM338886", "GSM338887", "GSM338888" ], "type": "time", "id": "GDS4940_11" }, { "dataset_id": "GDS4940", "description": "96 h", "sample_id": [ "GSM338889", "GSM338890", "GSM338891" ], "type": "time", "id": "GDS4940_12" }, { "dataset_id": "GDS4940", "description": "168 h", "sample_id": [ "GSM338892", "GSM338893", "GSM338894" ], "type": "time", "id": "GDS4940_13" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4940", "version": 1.0, "instances": "38", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4940.tab", "compression": "gz" } ], [ [ "GDS4941.tab" ], { "title": "Macrophage cell line response to Toxoplasma gondii infection", "description": "Analysis of RAW264.7 macrophage cells infected with Toxoplasma gondii RH type I. T. gondii is a ubiquitous parasite that infects and reproduces in nucleated cells of warm-blooded animals. Results provide insight into host cell functions altered in T. gondii infections.", "type": "Expression profiling by array", "pubmed_id": "24532536", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55298", "order": "none", "update_date": "May 29 2014", "subsets": [ { "dataset_id": "GDS4941", "description": "mock", "sample_id": [ "GSM1333786", "GSM1333787" ], "type": "infection", "id": "GDS4941_1" }, { "dataset_id": "GDS4941", "description": "T. gondii", "sample_id": [ "GSM1333788", "GSM1333789" ], "type": "infection", "id": "GDS4941_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4941", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4941.tab", "compression": "gz" } ], [ [ "GDS4942.tab" ], { "title": "Glucose effect on young pancreatic islets: dose response and time course", "description": "Analysis of islets isolated from young animals and cultured at 3mM glucose (G3) for 10 hr (T0) and then challenged with 11mM glucose for 1 hr (T1) and 4 hr (T4). Islets cultured at G3 for 2 days were also examined. Results provide insight into the kinetics of molecular response of islets to glucose.", "type": "Expression profiling by array", "pubmed_id": "23685457", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE42591", "order": "none", "update_date": "Apr 18 2016", "subsets": [ { "dataset_id": "GDS4942", "description": "3 mM (G3)", "sample_id": [ "GSM1045562", "GSM1045563", "GSM1045574", "GSM1045575" ], "type": "dose", "id": "GDS4942_1" }, { "dataset_id": "GDS4942", "description": "11 mM (G11)", "sample_id": [ "GSM1045578", "GSM1045579", "GSM1045576", "GSM1045577" ], "type": "dose", "id": "GDS4942_2" }, { "dataset_id": "GDS4942", "description": "2 days", "sample_id": [ "GSM1045562", "GSM1045563" ], "type": "time", "id": "GDS4942_3" }, { "dataset_id": "GDS4942", "description": "10 hr (T0)", "sample_id": [ "GSM1045574", "GSM1045575" ], "type": "time", "id": "GDS4942_4" }, { "dataset_id": "GDS4942", "description": "1 hr (T1)", "sample_id": [ "GSM1045576", "GSM1045577" ], "type": "time", "id": "GDS4942_5" }, { "dataset_id": "GDS4942", "description": "4 hrs (T4)", "sample_id": [ "GSM1045578", "GSM1045579" ], "type": "time", "id": "GDS4942_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4942", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4942.tab", "compression": "gz" } ], [ [ "GDS4943.tab" ], { "title": "Telomere-associated protein Rif1 depletion effect on stem cell lines", "description": "Analysis of J1 and F1 embryonic stem cells (ESCs) depleted for the telomere-associated protein Rif1. Results provide insight into the role Rif1 in ESC self-renewal and pluripotency.", "type": "Expression profiling by array", "pubmed_id": "24735877", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE55129", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4943", "description": "J1", "sample_id": [ "GSM1329895", "GSM1329896", "GSM1329897", "GSM1329898" ], "type": "cell line", "id": "GDS4943_1" }, { "dataset_id": "GDS4943", "description": "F1", "sample_id": [ "GSM1329899", "GSM1329900", "GSM1329901", "GSM1329902" ], "type": "cell line", "id": "GDS4943_2" }, { "dataset_id": "GDS4943", "description": "control", "sample_id": [ "GSM1329895", "GSM1329896", "GSM1329899", "GSM1329900" ], "type": "protocol", "id": "GDS4943_3" }, { "dataset_id": "GDS4943", "description": "Rif1 knockdown", "sample_id": [ "GSM1329897", "GSM1329898", "GSM1329901", "GSM1329902" ], "type": "protocol", "id": "GDS4943_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4943", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4943.tab", "compression": "gz" } ], [ [ "GDS4944.tab" ], { "title": "Estrogen effect on male and female haematopoietic stem cells", "description": "Comparison of male and female haematopoietic stem cells (HSCs) treated with estrogen. Results provide insight into the differences between the molecular response of male and female HSCs to sex hormones.", "type": "Expression profiling by array", "pubmed_id": "24451543", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE52711", "order": "none", "update_date": "May 29 2014", "subsets": [ { "dataset_id": "GDS4944", "description": "male", "sample_id": [ "GSM1274470", "GSM1274471", "GSM1274472", "GSM1274473", "GSM1274474", "GSM1274475" ], "type": "gender", "id": "GDS4944_1" }, { "dataset_id": "GDS4944", "description": "female", "sample_id": [ "GSM1274476", "GSM1274477", "GSM1274478", "GSM1274479", "GSM1274480", "GSM1274481" ], "type": "gender", "id": "GDS4944_2" }, { "dataset_id": "GDS4944", "description": "oil", "sample_id": [ "GSM1274470", "GSM1274471", "GSM1274472", "GSM1274476", "GSM1274477", "GSM1274478" ], "type": "agent", "id": "GDS4944_3" }, { "dataset_id": "GDS4944", "description": "estrogen", "sample_id": [ "GSM1274473", "GSM1274474", "GSM1274475", "GSM1274479", "GSM1274480", "GSM1274481" ], "type": "agent", "id": "GDS4944_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4944", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4944.tab", "compression": "gz" } ], [ [ "GDS4945.tab" ], { "title": "FG-3019/gemcitabine combined-treatment effect on KPC model of pancreatic ductal adenocarcinoma", "description": "Analysis of PDA tumors isolated from KPC (LSL-KrasG12D/+;LSL-Trp53R172H/+;Pdx-1-Cre) mice after combined treatment with FG-3019 (a mAb directed against CTGF) and chemotherapy drug gemcitabine. Results provide insight into the molecular basis of the enhanced anti-PDA activity of FG-3019/gemcitabine.", "type": "Expression profiling by array", "pubmed_id": "23836645", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE46203", "order": "none", "update_date": "May 07 2015", "subsets": [ { "dataset_id": "GDS4945", "description": "FG-3019", "sample_id": [ "GSM1126205", "GSM1126206", "GSM1126207", "GSM1126208", "GSM1126209" ], "type": "protocol", "id": "GDS4945_1" }, { "dataset_id": "GDS4945", "description": "FG-3019 + gemcitabine", "sample_id": [ "GSM1126216", "GSM1126217", "GSM1126218", "GSM1126219", "GSM1126220", "GSM1126221" ], "type": "protocol", "id": "GDS4945_2" }, { "dataset_id": "GDS4945", "description": "IgG + gemcitabine", "sample_id": [ "GSM1126210", "GSM1126211", "GSM1126212", "GSM1126213", "GSM1126214", "GSM1126215" ], "type": "protocol", "id": "GDS4945_3" }, { "dataset_id": "GDS4945", "description": "IgG", "sample_id": [ "GSM1126198", "GSM1126199", "GSM1126200", "GSM1126201", "GSM1126202", "GSM1126203", "GSM1126204" ], "type": "protocol", "id": "GDS4945_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS4945", "version": 1.0, "instances": "24", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4945.tab", "compression": "gz" } ], [ [ "GDS4946.tab" ], { "title": "Regulatory T cell ablation effect on BDC2.5/NOD pancreatic or splenic natural killer cells: time course", "description": "Analysis of natural killer (NK) cells isolated from the pancreas or spleen of BDC2.5/NOD.Foxp3DTR animals up to 24 hours after diphtheria toxin (DT) injection to ablate regulatory T (Treg) cells. Results provide insight into molecular mechanisms underlying Treg/NK cross-talk in controlling diabetes.", "type": "Expression profiling by array", "pubmed_id": "23650440", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "count", "reference_series": "GSE39197", "order": "none", "update_date": "Apr 25 2016", "subsets": [ { "dataset_id": "GDS4946", "description": "pancreas", "sample_id": [ "GSM957805", "GSM957806", "GSM957807", "GSM957808", "GSM957809", "GSM957810", "GSM957811", "GSM957812", "GSM957813", "GSM957814", "GSM957824", "GSM957825", "GSM957826", "GSM957827", "GSM957828", "GSM957829" ], "type": "tissue", "id": "GDS4946_1" }, { "dataset_id": "GDS4946", "description": "spleen", "sample_id": [ "GSM957815", "GSM957816", "GSM957817", "GSM957818", "GSM957819", "GSM957820", "GSM957821", "GSM957822", "GSM957823", "GSM957830", "GSM957831", "GSM957832", "GSM957833", "GSM957834", "GSM957835", "GSM957836" ], "type": "tissue", "id": "GDS4946_2" }, { "dataset_id": "GDS4946", "description": "BDC2.5/NOD.Foxp3DTR", "sample_id": [ "GSM957805", "GSM957806", "GSM957807", "GSM957808", "GSM957809", "GSM957810", "GSM957811", "GSM957812", "GSM957813", "GSM957814", "GSM957815", "GSM957816", "GSM957817", "GSM957818", "GSM957819", "GSM957820", "GSM957821", "GSM957822", "GSM957823" ], "type": "genotype/variation", "id": "GDS4946_3" }, { "dataset_id": "GDS4946", "description": "control", "sample_id": [ "GSM957824", "GSM957825", "GSM957826", "GSM957827", "GSM957828", "GSM957829", "GSM957830", "GSM957831", "GSM957832", "GSM957833", "GSM957834", "GSM957835", "GSM957836" ], "type": "genotype/variation", "id": "GDS4946_4" }, { "dataset_id": "GDS4946", "description": "8 hours", "sample_id": [ "GSM957812", "GSM957813", "GSM957814", "GSM957821", "GSM957822", "GSM957823", "GSM957828", "GSM957829", "GSM957834", "GSM957835", "GSM957836" ], "type": "time", "id": "GDS4946_5" }, { "dataset_id": "GDS4946", "description": "15 hours", "sample_id": [ "GSM957805", "GSM957806", "GSM957807", "GSM957815", "GSM957816", "GSM957817", "GSM957824", "GSM957825", "GSM957830", "GSM957831" ], "type": "time", "id": "GDS4946_6" }, { "dataset_id": "GDS4946", "description": "24 hours", "sample_id": [ "GSM957808", "GSM957809", "GSM957810", "GSM957811", "GSM957818", "GSM957819", "GSM957820", "GSM957826", "GSM957827", "GSM957832", "GSM957833" ], "type": "time", "id": "GDS4946_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4946", "version": 1.0, "instances": "32", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4946.tab", "compression": "gz" } ], [ [ "GDS4947.tab" ], { "title": "Distal convoluted tubular epithelial cell line response to mineralocorticoid receptor overexpression and aldosterone", "description": "Analysis of distal convoluted tubular epithelial cells overexpressing the mineralocorticoid receptor (MR) after treatment with aldosterone alone or together with spironolactone, an MR blocker. MR is a member of the nuclear receptor family and binds aldosterone. Results identify MR gene targets.", "type": "Expression profiling by array", "pubmed_id": "24491541", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE52686", "order": "none", "update_date": "Jun 23 2014", "subsets": [ { "dataset_id": "GDS4947", "description": "ethanol", "sample_id": [ "GSM1274113" ], "type": "agent", "id": "GDS4947_1" }, { "dataset_id": "GDS4947", "description": "aldosterone", "sample_id": [ "GSM1274114", "GSM1274115" ], "type": "agent", "id": "GDS4947_2" }, { "dataset_id": "GDS4947", "description": "aldosterone and spironolactone", "sample_id": [ "GSM1274116" ], "type": "agent", "id": "GDS4947_3" }, { "dataset_id": "GDS4947", "description": "10^-9 M aldosterone", "sample_id": [ "GSM1274114" ], "type": "dose", "id": "GDS4947_4" }, { "dataset_id": "GDS4947", "description": "10^-7 M aldosterone", "sample_id": [ "GSM1274116", "GSM1274115" ], "type": "dose", "id": "GDS4947_5" }, { "dataset_id": "GDS4947", "description": "control", "sample_id": [ "GSM1274113" ], "type": "dose", "id": "GDS4947_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4947", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4947.tab", "compression": "gz" } ], [ [ "GDS4948.tab" ], { "title": "Transforming growth factor beta effect on cytokine-activated, NOD-derived, splenic natural killer cells", "description": "Analysis of NOD-derived, splenic natural killer (NK) cells cultured with or without cytokines interleukin (IL)-12 + IL-18 in the absence of TGF-\u03b2, or with both cytokines in the presence of TGF-\u03b2. Results provide insight into the impact of TGF-\u03b2 on NK cells independent of general activation.", "type": "Expression profiling by array", "pubmed_id": "23650440", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE39197", "order": "none", "update_date": "Apr 25 2016", "subsets": [ { "dataset_id": "GDS4948", "description": "unactivated control", "sample_id": [ "GSM957801", "GSM957802", "GSM957803", "GSM957804" ], "type": "protocol", "id": "GDS4948_1" }, { "dataset_id": "GDS4948", "description": "IL-12 + IL-18", "sample_id": [ "GSM957796", "GSM957797", "GSM957798" ], "type": "protocol", "id": "GDS4948_2" }, { "dataset_id": "GDS4948", "description": "IL-12 + IL-18, TGF-\u03b2", "sample_id": [ "GSM957799", "GSM957800" ], "type": "protocol", "id": "GDS4948_3" }, { "dataset_id": "GDS4948", "description": "0 hour", "sample_id": [ "GSM957801", "GSM957802" ], "type": "time", "id": "GDS4948_4" }, { "dataset_id": "GDS4948", "description": "15-20 hours", "sample_id": [ "GSM957796", "GSM957797", "GSM957798", "GSM957799", "GSM957800", "GSM957803", "GSM957804" ], "type": "time", "id": "GDS4948_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4948", "version": 1.0, "instances": "9", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4948.tab", "compression": "gz" } ], [ [ "GDS4949.tab" ], { "title": "Streptozotocin effect on pancreas of offspring of protein-restricted dams", "description": "Analysis of pancreas from streptozotocin-injected female offspring of low protein-fed dams. These offspring fail to regenerate their \u03b2-cells following depletion with STZ. Results provide insight into molecular basis of failed \u03b2-cell regeneration in offspring of protein-restricted pregnant mice.", "type": "Expression profiling by array", "pubmed_id": "23986224", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE38215", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4949", "description": "control diet (20% protein)", "sample_id": [ "GSM936823", "GSM936824", "GSM936825", "GSM936826", "GSM936827" ], "type": "growth protocol", "id": "GDS4949_1" }, { "dataset_id": "GDS4949", "description": "low protein diet (8% protein)", "sample_id": [ "GSM936828", "GSM936829", "GSM936830", "GSM936831", "GSM936832", "GSM936833" ], "type": "growth protocol", "id": "GDS4949_2" }, { "dataset_id": "GDS4949", "description": "sham", "sample_id": [ "GSM936823", "GSM936824", "GSM936825", "GSM936828", "GSM936829", "GSM936830" ], "type": "protocol", "id": "GDS4949_3" }, { "dataset_id": "GDS4949", "description": "streptozotocin injection", "sample_id": [ "GSM936826", "GSM936827", "GSM936831", "GSM936832", "GSM936833" ], "type": "protocol", "id": "GDS4949_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4949", "version": 1.0, "instances": "11", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4949.tab", "compression": "gz" } ], [ [ "GDS495.tab" ], { "title": "Angiogenesis", "description": "Temporal analysis of human umbilical cord vein endothelial cell (HUVEC) isolates treated with angiogenic factors vascular endothelial growth factor-A (VEGF-A) and placental growth factor (PlGF) in low or high serum media.", "type": "Expression profiling by array", "pubmed_id": "15516835", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE837", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS495", "description": "VEGF-A", "sample_id": [ "GSM12895", "GSM12897", "GSM12899", "GSM12901", "GSM12903", "GSM12905", "GSM12907", "GSM12909", "GSM12911" ], "type": "agent", "id": "GDS495_1" }, { "dataset_id": "GDS495", "description": "PIGF", "sample_id": [ "GSM12913", "GSM12915", "GSM12917", "GSM12920", "GSM12922", "GSM12926" ], "type": "agent", "id": "GDS495_2" }, { "dataset_id": "GDS495", "description": "control", "sample_id": [ "GSM12894", "GSM12896", "GSM12898", "GSM12900", "GSM12902", "GSM12904", "GSM12906", "GSM12908", "GSM12910", "GSM12912", "GSM12914", "GSM12916", "GSM12918", "GSM12919", "GSM12921", "GSM12923", "GSM12924", "GSM12925" ], "type": "agent", "id": "GDS495_3" }, { "dataset_id": "GDS495", "description": "low serum", "sample_id": [ "GSM12900", "GSM12901", "GSM12902", "GSM12903", "GSM12904", "GSM12905", "GSM12906", "GSM12907", "GSM12908", "GSM12909", "GSM12910", "GSM12911", "GSM12918", "GSM12919", "GSM12920", "GSM12921", "GSM12922", "GSM12926" ], "type": "growth protocol", "id": "GDS495_4" }, { "dataset_id": "GDS495", "description": "high serum", "sample_id": [ "GSM12894", "GSM12895", "GSM12896", "GSM12897", "GSM12898", "GSM12899", "GSM12912", "GSM12913", "GSM12914", "GSM12915", "GSM12916", "GSM12917", "GSM12923", "GSM12924", "GSM12925" ], "type": "growth protocol", "id": "GDS495_5" }, { "dataset_id": "GDS495", "description": "control", "sample_id": [ "GSM12894", "GSM12896", "GSM12898", "GSM12900", "GSM12902", "GSM12904", "GSM12906", "GSM12908", "GSM12910", "GSM12912", "GSM12914", "GSM12916", "GSM12918", "GSM12919", "GSM12921", "GSM12923", "GSM12924", "GSM12925" ], "type": "time", "id": "GDS495_6" }, { "dataset_id": "GDS495", "description": "4 hour", "sample_id": [ "GSM12901", "GSM12903", "GSM12905" ], "type": "time", "id": "GDS495_7" }, { "dataset_id": "GDS495", "description": "24 hour", "sample_id": [ "GSM12895", "GSM12897", "GSM12899", "GSM12907", "GSM12909", "GSM12913", "GSM12915", "GSM12917", "GSM12920", "GSM12922", "GSM12926" ], "type": "time", "id": "GDS495_8" }, { "dataset_id": "GDS495", "description": "42 hour", "sample_id": [ "GSM12911" ], "type": "time", "id": "GDS495_9" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS495", "version": 1.0, "instances": "33", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS495.tab", "compression": "gz" } ], [ [ "GDS4950.tab" ], { "title": "High-grade serous ovarian cancer resistant to platinum-based chemotherapy", "description": "Analysis of tumors from high-grade serous ovarian cancer patients resistant or sensitive to platinum-based chemotherapy. Tumor samples collected prior to chemotherapy. Results identify a gene expression profile associated with intrinsic chemotherapy resistance.", "type": "Expression profiling by array", "pubmed_id": "24237932", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE51373", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS4950", "description": "platinum-based chemotherapy resistant", "sample_id": [ "GSM1243878", "GSM1243879", "GSM1243880", "GSM1243882", "GSM1243885", "GSM1243891", "GSM1243892", "GSM1243893", "GSM1243894", "GSM1243896", "GSM1243897", "GSM1243904" ], "type": "specimen", "id": "GDS4950_1" }, { "dataset_id": "GDS4950", "description": "platinum-based chemotherapy sensitive", "sample_id": [ "GSM1243877", "GSM1243881", "GSM1243883", "GSM1243884", "GSM1243886", "GSM1243887", "GSM1243888", "GSM1243889", "GSM1243890", "GSM1243895", "GSM1243898", "GSM1243899", "GSM1243900", "GSM1243901", "GSM1243902", "GSM1243903" ], "type": "specimen", "id": "GDS4950_2" }, { "dataset_id": "GDS4950", "description": "stage II", "sample_id": [ "GSM1243895" ], "type": "disease state", "id": "GDS4950_3" }, { "dataset_id": "GDS4950", "description": "stage IIa", "sample_id": [ "GSM1243898" ], "type": "disease state", "id": "GDS4950_4" }, { "dataset_id": "GDS4950", "description": "stage IIb", "sample_id": [ "GSM1243886", "GSM1243893" ], "type": "disease state", "id": "GDS4950_5" }, { "dataset_id": "GDS4950", "description": "stage III", "sample_id": [ "GSM1243879", "GSM1243881", "GSM1243904" ], "type": "disease state", "id": "GDS4950_6" }, { "dataset_id": "GDS4950", "description": "stage IIIa", "sample_id": [ "GSM1243887", "GSM1243889", "GSM1243890", "GSM1243900" ], "type": "disease state", "id": "GDS4950_7" }, { "dataset_id": "GDS4950", "description": "stage IV", "sample_id": [ "GSM1243877", "GSM1243878", "GSM1243882" ], "type": "disease state", "id": "GDS4950_8" }, { "dataset_id": "GDS4950", "description": "unknown", "sample_id": [ "GSM1243884" ], "type": "disease state", "id": "GDS4950_9" }, { "dataset_id": "GDS4950", "description": "stage IIIc", "sample_id": [ "GSM1243880", "GSM1243883", "GSM1243888", "GSM1243891", "GSM1243892", "GSM1243894", "GSM1243897", "GSM1243901", "GSM1243902", "GSM1243903" ], "type": "disease state", "id": "GDS4950_10" }, { "dataset_id": "GDS4950", "description": "stage IIIb", "sample_id": [ "GSM1243899", "GSM1243896" ], "type": "disease state", "id": "GDS4950_11" }, { "dataset_id": "GDS4950", "description": "stage IIc", "sample_id": [ "GSM1243885" ], "type": "disease state", "id": "GDS4950_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4950", "version": 1.0, "instances": "28", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4950.tab", "compression": "gz" } ], [ [ "GDS4951.tab" ], { "title": "Lysophosphatidic acid effect on breast and prostate cancer cell lines", "description": "Analysis of MDA-MB-231, MCF7 and PC3 cells treated with lysophosphatidic acid (LPA). LPA activates six different G protein-coupled receptors (LPA receptors 1-6). Results provide insight into LPA-induced genes among three unrelated cancer cell lines expressing different patterns of LPA receptors.", "type": "Expression profiling by array", "pubmed_id": "24828490", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE56265", "order": "none", "update_date": "May 07 2015", "subsets": [ { "dataset_id": "GDS4951", "description": "prostate cancer PC3", "sample_id": [ "GSM1357978", "GSM1357979", "GSM1357980", "GSM1357981" ], "type": "cell line", "id": "GDS4951_1" }, { "dataset_id": "GDS4951", "description": "breast cancer MDA-MB-231", "sample_id": [ "GSM1357970", "GSM1357971", "GSM1357972", "GSM1357973" ], "type": "cell line", "id": "GDS4951_2" }, { "dataset_id": "GDS4951", "description": "breast cancer MCF7", "sample_id": [ "GSM1357974", "GSM1357975", "GSM1357976", "GSM1357977" ], "type": "cell line", "id": "GDS4951_3" }, { "dataset_id": "GDS4951", "description": "lysophosphatidic acid", "sample_id": [ "GSM1357981", "GSM1357980", "GSM1357973", "GSM1357972", "GSM1357977", "GSM1357976" ], "type": "agent", "id": "GDS4951_4" }, { "dataset_id": "GDS4951", "description": "control", "sample_id": [ "GSM1357979", "GSM1357978", "GSM1357971", "GSM1357970", "GSM1357975", "GSM1357974" ], "type": "agent", "id": "GDS4951_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4951", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4951.tab", "compression": "gz" } ], [ [ "GDS4952.tab" ], { "title": "BET bromodomain inhibitor I-BET762 effect on prostate cancer cell lines: dose response", "description": "Analysis of prostate cancer (PC) cell lines (NCI-H660, VCaP, LNCaP, PC-3) treated with I-BET762 at 0.5uM or 10uM for 24hr. I-BET762 is a highly specific inhibitor of BET (bromodomain and extra-terminal) proteins. Results provide insight into molecular pathways regulated by I-BET762 treatment in PC.", "type": "Expression profiling by array", "pubmed_id": "24293458", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE56352", "order": "none", "update_date": "Apr 25 2016", "subsets": [ { "dataset_id": "GDS4952", "description": "LNCAP", "sample_id": [ "GSM1359772", "GSM1359773", "GSM1359774", "GSM1359775", "GSM1359776", "GSM1359777" ], "type": "cell line", "id": "GDS4952_1" }, { "dataset_id": "GDS4952", "description": "NCIH660", "sample_id": [ "GSM1359760", "GSM1359761", "GSM1359762", "GSM1359763", "GSM1359764", "GSM1359765" ], "type": "cell line", "id": "GDS4952_2" }, { "dataset_id": "GDS4952", "description": "PC3", "sample_id": [ "GSM1359778", "GSM1359779", "GSM1359780", "GSM1359781", "GSM1359782", "GSM1359783" ], "type": "cell line", "id": "GDS4952_3" }, { "dataset_id": "GDS4952", "description": "VCAP", "sample_id": [ "GSM1359766", "GSM1359767", "GSM1359768", "GSM1359769", "GSM1359770", "GSM1359771" ], "type": "cell line", "id": "GDS4952_4" }, { "dataset_id": "GDS4952", "description": "control", "sample_id": [ "GSM1359772", "GSM1359773", "GSM1359760", "GSM1359761", "GSM1359778", "GSM1359779", "GSM1359766", "GSM1359767" ], "type": "dose", "id": "GDS4952_5" }, { "dataset_id": "GDS4952", "description": "0.5 uM", "sample_id": [ "GSM1359774", "GSM1359775", "GSM1359762", "GSM1359763", "GSM1359780", "GSM1359781", "GSM1359768", "GSM1359769" ], "type": "dose", "id": "GDS4952_6" }, { "dataset_id": "GDS4952", "description": "10 uM", "sample_id": [ "GSM1359776", "GSM1359777", "GSM1359764", "GSM1359765", "GSM1359782", "GSM1359783", "GSM1359770", "GSM1359771" ], "type": "dose", "id": "GDS4952_7" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4952", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4952.tab", "compression": "gz" } ], [ [ "GDS4953.tab" ], { "title": "Cobalt effect on liver cell line H4IIEC3: dose response", "description": "Analysis of H4IIEC3 liver cells exposed to 29 or 62 uM cobalt chloride. Cobalt (Co) is a heavy metal found naturally in low concentrations and used in military and industrial applications. Co exposure can result in adverse health effects. Results provide insight into the mechanisms of Co toxicity.", "type": "Expression profiling by array", "pubmed_id": "24386269", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE51207", "order": "none", "update_date": "Jun 02 2014", "subsets": [ { "dataset_id": "GDS4953", "description": "untreated", "sample_id": [ "GSM1240502", "GSM1240505", "GSM1240508", "GSM1240511" ], "type": "agent", "id": "GDS4953_1" }, { "dataset_id": "GDS4953", "description": "cobalt chloride", "sample_id": [ "GSM1240503", "GSM1240504", "GSM1240506", "GSM1240507", "GSM1240509", "GSM1240510", "GSM1240512", "GSM1240513" ], "type": "agent", "id": "GDS4953_2" }, { "dataset_id": "GDS4953", "description": "control", "sample_id": [ "GSM1240502", "GSM1240505", "GSM1240508", "GSM1240511" ], "type": "dose", "id": "GDS4953_3" }, { "dataset_id": "GDS4953", "description": "29 uM", "sample_id": [ "GSM1240503", "GSM1240506", "GSM1240509", "GSM1240512" ], "type": "dose", "id": "GDS4953_4" }, { "dataset_id": "GDS4953", "description": "62 uM", "sample_id": [ "GSM1240504", "GSM1240507", "GSM1240510", "GSM1240513" ], "type": "dose", "id": "GDS4953_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4953", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4953.tab", "compression": "gz" } ], [ [ "GDS4954.tab" ], { "title": "Cobalt effect on liver cell line MH1C1: dose response", "description": "Analysis of MH1C1 liver cells exposed to 160 or 310 uM cobalt chloride. Cobalt (Co) is a heavy metal found naturally in low concentrations and used in military and industrial applications. Co exposure can result in adverse health effects. Results provide insight into the mechanisms of Co toxicity.", "type": "Expression profiling by array", "pubmed_id": "24386269", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE51207", "order": "none", "update_date": "Jun 02 2014", "subsets": [ { "dataset_id": "GDS4954", "description": "untreated", "sample_id": [ "GSM1240490", "GSM1240493", "GSM1240496", "GSM1240499" ], "type": "agent", "id": "GDS4954_1" }, { "dataset_id": "GDS4954", "description": "cobalt chloride", "sample_id": [ "GSM1240491", "GSM1240492", "GSM1240494", "GSM1240495", "GSM1240497", "GSM1240498", "GSM1240500", "GSM1240501" ], "type": "agent", "id": "GDS4954_2" }, { "dataset_id": "GDS4954", "description": "control", "sample_id": [ "GSM1240490", "GSM1240493", "GSM1240496", "GSM1240499" ], "type": "dose", "id": "GDS4954_3" }, { "dataset_id": "GDS4954", "description": "160 uM", "sample_id": [ "GSM1240491", "GSM1240494", "GSM1240497", "GSM1240500" ], "type": "dose", "id": "GDS4954_4" }, { "dataset_id": "GDS4954", "description": "310 uM", "sample_id": [ "GSM1240492", "GSM1240495", "GSM1240498", "GSM1240501" ], "type": "dose", "id": "GDS4954_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS4954", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4954.tab", "compression": "gz" } ], [ [ "GDS4955.tab" ], { "title": "Prostate cancer cell line response to overexpression of Twist1 and Twist1 mutants", "description": "Analysis of Myc-Cap prostate cancer (PC) cells overexpressing Twist1 and mutants F191G, AQA, and DQD. Twist1, a basic helix-loop-helix transcription factor, is a master regulator of EMT that promotes cancer metastasis. Results provide insight into molecular basis of Twist1-induced PC metastasis.", "type": "Expression profiling by array", "pubmed_id": "23982216", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE50002", "order": "none", "update_date": "Jun 22 2014", "subsets": [ { "dataset_id": "GDS4955", "description": "Twist1-AQA", "sample_id": [ "GSM1211849", "GSM1211854", "GSM1211859" ], "type": "genotype/variation", "id": "GDS4955_1" }, { "dataset_id": "GDS4955", "description": "Twist1-DQD", "sample_id": [ "GSM1211850", "GSM1211855", "GSM1211860" ], "type": "genotype/variation", "id": "GDS4955_2" }, { "dataset_id": "GDS4955", "description": "Twist1-F191G", "sample_id": [ "GSM1211851", "GSM1211856", "GSM1211861" ], "type": "genotype/variation", "id": "GDS4955_3" }, { "dataset_id": "GDS4955", "description": "vector", "sample_id": [ "GSM1211847", "GSM1211852", "GSM1211857" ], "type": "genotype/variation", "id": "GDS4955_4" }, { "dataset_id": "GDS4955", "description": "Twist1-wild type", "sample_id": [ "GSM1211848", "GSM1211853", "GSM1211858" ], "type": "genotype/variation", "id": "GDS4955_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4955", "version": 1.0, "instances": "15", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4955.tab", "compression": "gz" } ], [ [ "GDS4956.tab" ], { "title": "KSHV viral interferon regulatory factor 4 overexpression effect on primary effusion lymphoma cell line", "description": "Analysis of Kaposi's sarcoma-associated herpesvirus (KSHV) infected BCBL-1 primary effusion lymphoma cells that are ectopically overexpressing viral interferon regulatory factor 4 (vIRF4). Results provide insight into the role of vIRF4 in the lytic replication of KSHV.", "type": "Expression profiling by array", "pubmed_id": "24335298", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE49506", "order": "none", "update_date": "Jun 02 2014", "subsets": [ { "dataset_id": "GDS4956", "description": "no vIRF4 expression", "sample_id": [ "GSM1200171", "GSM1200172" ], "type": "protocol", "id": "GDS4956_1" }, { "dataset_id": "GDS4956", "description": "vIRF4 overexpression", "sample_id": [ "GSM1200173", "GSM1200174" ], "type": "protocol", "id": "GDS4956_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4956", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4956.tab", "compression": "gz" } ], [ [ "GDS4957.tab" ], { "title": "FOXA1 overexpression effect on prostate cancer cell line", "description": "Analysis of LNCaP prostate cancer cells overexpressing FOXA1. FOXA1 is a key member of the androgen receptor (AR) transcription factor complex. Results provide insight into the role of FOXA1 in prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "24292680", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE49153", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4957", "description": "GFP control", "sample_id": [ "GSM1194643", "GSM1194637", "GSM1194636", "GSM1194642", "GSM1194635", "GSM1194641" ], "type": "protocol", "id": "GDS4957_1" }, { "dataset_id": "GDS4957", "description": "FOXA1 overexpression", "sample_id": [ "GSM1194634", "GSM1194645", "GSM1194640", "GSM1194639", "GSM1194638", "GSM1194644" ], "type": "protocol", "id": "GDS4957_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS4957", "version": 1.0, "instances": "12", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4957.tab", "compression": "gz" } ], [ [ "GDS4960.tab" ], { "title": "ISCU myopathy", "description": "Analyis of vastus lateralis muscles of patients with iron-sulfur cluster scaffold homolog (ISCU) myopathy. ISCU is a rare autosomal recessive Fe-S cluster deficiency syndrome characterized by life-long exercise intolerance. Results provide insight into the molecular pathophysiology of ISCU myopathy.", "type": "Expression profiling by array", "pubmed_id": "23943793", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE48574", "order": "none", "update_date": "Jun 04 2014", "subsets": [ { "dataset_id": "GDS4960", "description": "control", "sample_id": [ "GSM1181419", "GSM1181420", "GSM1181421", "GSM1181422", "GSM1181423" ], "type": "disease state", "id": "GDS4960_1" }, { "dataset_id": "GDS4960", "description": "ISCU myopathy", "sample_id": [ "GSM1181424", "GSM1181425", "GSM1181426" ], "type": "disease state", "id": "GDS4960_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4960", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4960.tab", "compression": "gz" } ], [ [ "GDS4961.tab" ], { "title": "Claudin 18 deficiency effect on the lung", "description": "Analysis of lungs of claudin 18 (C18) mutants. Claudin are constituents of epithelial and endothelial tight junctions that regulate paracellular permeability to ions and solutes. C18 is expressed in the lung alveolar epthelia (AE). Results provide insight into the role of C18 in AE barrier function.", "type": "Expression profiling by array", "pubmed_id": "24588076", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE48443", "order": "none", "update_date": "Jun 04 2014", "subsets": [ { "dataset_id": "GDS4961", "description": "claudin 18 null", "sample_id": [ "GSM1178811", "GSM1178812", "GSM1178813" ], "type": "genotype/variation", "id": "GDS4961_1" }, { "dataset_id": "GDS4961", "description": "wild type", "sample_id": [ "GSM1178814", "GSM1178815", "GSM1178816", "GSM1178817" ], "type": "genotype/variation", "id": "GDS4961_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS4961", "version": 1.0, "instances": "7", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4961.tab", "compression": "gz" } ], [ [ "GDS4962.tab" ], { "title": "Transcription factor ETS fusion EWS/FLI1 knockdown in Ewing sarcoma cell line: time course", "description": "Analysis of A673 Ewing Sarcoma cell line for up to 96hrs after inducible EWSR1/FLI1 knockdown. Oncogenic ETS fusions are driver mutations in diverse cancers, including Ewing sarcoma. Results provide insight into the molecular mechanisms underlying ETS-driven tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "23940108", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE27524", "order": "ordered", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4962", "description": "hour 0", "sample_id": [ "GSM679847", "GSM679848", "GSM679849", "GSM679850" ], "type": "time", "id": "GDS4962_1" }, { "dataset_id": "GDS4962", "description": "hour 18", "sample_id": [ "GSM679851", "GSM679852", "GSM679853" ], "type": "time", "id": "GDS4962_2" }, { "dataset_id": "GDS4962", "description": "hour 36", "sample_id": [ "GSM679854", "GSM679855", "GSM679856" ], "type": "time", "id": "GDS4962_3" }, { "dataset_id": "GDS4962", "description": "hour 53", "sample_id": [ "GSM679857", "GSM679858" ], "type": "time", "id": "GDS4962_4" }, { "dataset_id": "GDS4962", "description": "hour 72", "sample_id": [ "GSM679859", "GSM679860" ], "type": "time", "id": "GDS4962_5" }, { "dataset_id": "GDS4962", "description": "hour 96", "sample_id": [ "GSM679861", "GSM679862" ], "type": "time", "id": "GDS4962_6" }, { "dataset_id": "GDS4962", "description": "control", "sample_id": [ "GSM679847", "GSM679848", "GSM679849", "GSM679850" ], "type": "protocol", "id": "GDS4962_7" }, { "dataset_id": "GDS4962", "description": "EWSR1/FLI1 knockdown", "sample_id": [ "GSM679851", "GSM679852", "GSM679853", "GSM679854", "GSM679855", "GSM679856", "GSM679857", "GSM679858", "GSM679859", "GSM679860", "GSM679861", "GSM679862" ], "type": "protocol", "id": "GDS4962_8" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4962", "version": 1.0, "instances": "16", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4962.tab", "compression": "gz" } ], [ [ "GDS4963.tab" ], { "title": "Transcription factor FOXO1 silencing effect on Ewing Sarcoma cell line", "description": "Analysis of Ewing sarcoma cell line A673sh (a doxycycline-inducible, EWS-FLI1-shRNA expressing derivative of A673) transfected with pRS-sh-FOXO1 plasmid targeting FOXO1wt, in the presence or absence of Dox. Results provide insight into FOXO1's contribution to the EWS-FLI1 transcriptional signature.", "type": "Expression profiling by array", "pubmed_id": "23995784", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE37409", "order": "none", "update_date": "Apr 25 2016", "subsets": [ { "dataset_id": "GDS4963", "description": "sh-scrambled", "sample_id": [ "GSM918093", "GSM918097" ], "type": "protocol", "id": "GDS4963_1" }, { "dataset_id": "GDS4963", "description": "sh-scrambled + Dox", "sample_id": [ "GSM918094", "GSM918098" ], "type": "protocol", "id": "GDS4963_2" }, { "dataset_id": "GDS4963", "description": "sh-FOXO1", "sample_id": [ "GSM918095", "GSM918099" ], "type": "protocol", "id": "GDS4963_3" }, { "dataset_id": "GDS4963", "description": "sh-FOXO1 + Dox", "sample_id": [ "GSM918096", "GSM918100" ], "type": "protocol", "id": "GDS4963_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4963", "version": 1.0, "instances": "8", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4963.tab", "compression": "gz" } ], [ [ "GDS4964.tab" ], { "title": "Telomere-elongated, prostate cancer cells", "description": "Analysis of telomere-elongated PC-3 prostate cancer cells in the presence of exogenous human telomerase reverse transcriptase (hTERT). Forced elongation of telomeres promotes PC-3 cell differentiation. Results provide insight into the influence of telomere length on tumor malignancy.", "type": "Expression profiling by array", "pubmed_id": "23716593", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE41559", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4964", "description": "telomere elongation", "sample_id": [ "GSM1019102", "GSM1019103", "GSM1019104", "GSM1019105", "GSM1019110", "GSM1019111", "GSM1019112", "GSM1019113" ], "type": "protocol", "id": "GDS4964_1" }, { "dataset_id": "GDS4964", "description": "control", "sample_id": [ "GSM1019098", "GSM1019099", "GSM1019100", "GSM1019101", "GSM1019106", "GSM1019107", "GSM1019108", "GSM1019109" ], "type": "protocol", "id": "GDS4964_2" }, { "dataset_id": "GDS4964", "description": "basal hTERT", "sample_id": [ "GSM1019098", "GSM1019099", "GSM1019100", "GSM1019101", "GSM1019106", "GSM1019107", "GSM1019108", "GSM1019109", "GSM1019110", "GSM1019111", "GSM1019112", "GSM1019113" ], "type": "genotype/variation", "id": "GDS4964_3" }, { "dataset_id": "GDS4964", "description": "hTERT overexpression", "sample_id": [ "GSM1019102", "GSM1019103", "GSM1019104", "GSM1019105" ], "type": "genotype/variation", "id": "GDS4964_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4964", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4964.tab", "compression": "gz" } ], [ [ "GDS4966.tab" ], { "title": "Active tuberculosis: peripheral blood mononuclear cells", "description": "Analysis of PBMCs isolated from patients with active pulmonary tuberculosis (PTB) and latent TB infection (LTBI). Results provide insight into identifying potential biomarkers that can distinguish individuals with PTB from LTBI.", "type": "Expression profiling by array", "pubmed_id": "24647646", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "transformed count", "reference_series": "GSE54992", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS4966", "description": "tuberculosis", "sample_id": [ "GSM1327526", "GSM1327533", "GSM1327531", "GSM1327540", "GSM1327529", "GSM1327527", "GSM1327530", "GSM1327535", "GSM1327528" ], "type": "disease state", "id": "GDS4966_1" }, { "dataset_id": "GDS4966", "description": "latent tuberculosis infection", "sample_id": [ "GSM1327539", "GSM1327551", "GSM1327547", "GSM1327545", "GSM1327543", "GSM1327548" ], "type": "disease state", "id": "GDS4966_2" }, { "dataset_id": "GDS4966", "description": "healthy donor", "sample_id": [ "GSM1327541", "GSM1327542", "GSM1327550", "GSM1327546", "GSM1327549", "GSM1327544" ], "type": "disease state", "id": "GDS4966_3" }, { "dataset_id": "GDS4966", "description": "TB 1", "sample_id": [ "GSM1327526" ], "type": "individual", "id": "GDS4966_4" }, { "dataset_id": "GDS4966", "description": "TB 2", "sample_id": [ "GSM1327533" ], "type": "individual", "id": "GDS4966_5" }, { "dataset_id": "GDS4966", "description": "TB 3", "sample_id": [ "GSM1327531" ], "type": "individual", "id": "GDS4966_6" }, { "dataset_id": "GDS4966", "description": "TB 4", "sample_id": [ "GSM1327540" ], "type": "individual", "id": "GDS4966_7" }, { "dataset_id": "GDS4966", "description": "TB 5", "sample_id": [ "GSM1327529" ], "type": "individual", "id": "GDS4966_8" }, { "dataset_id": "GDS4966", "description": "TB 6", "sample_id": [ "GSM1327527" ], "type": "individual", "id": "GDS4966_9" }, { "dataset_id": "GDS4966", "description": "TB 7", "sample_id": [ "GSM1327530" ], "type": "individual", "id": "GDS4966_10" }, { "dataset_id": "GDS4966", "description": "TB 8", "sample_id": [ "GSM1327535" ], "type": "individual", "id": "GDS4966_11" }, { "dataset_id": "GDS4966", "description": "TB 9", "sample_id": [ "GSM1327528" ], "type": "individual", "id": "GDS4966_12" }, { "dataset_id": "GDS4966", "description": "HD 1", "sample_id": [ "GSM1327544" ], "type": "individual", "id": "GDS4966_13" }, { "dataset_id": "GDS4966", "description": "HD 2", "sample_id": [ "GSM1327549" ], "type": "individual", "id": "GDS4966_14" }, { "dataset_id": "GDS4966", "description": "HD 3", "sample_id": [ "GSM1327546" ], "type": "individual", "id": "GDS4966_15" }, { "dataset_id": "GDS4966", "description": "HD 4", "sample_id": [ "GSM1327550" ], "type": "individual", "id": "GDS4966_16" }, { "dataset_id": "GDS4966", "description": "HD 5", "sample_id": [ "GSM1327542" ], "type": "individual", "id": "GDS4966_17" }, { "dataset_id": "GDS4966", "description": "HD 6", "sample_id": [ "GSM1327541" ], "type": "individual", "id": "GDS4966_18" }, { "dataset_id": "GDS4966", "description": "LTBI 1", "sample_id": [ "GSM1327548" ], "type": "individual", "id": "GDS4966_19" }, { "dataset_id": "GDS4966", "description": "LTBI 2", "sample_id": [ "GSM1327543" ], "type": "individual", "id": "GDS4966_20" }, { "dataset_id": "GDS4966", "description": "LTBI 3", "sample_id": [ "GSM1327545" ], "type": "individual", "id": "GDS4966_21" }, { "dataset_id": "GDS4966", "description": "LTBI 4", "sample_id": [ "GSM1327547" ], "type": "individual", "id": "GDS4966_22" }, { "dataset_id": "GDS4966", "description": "LTBI 5", "sample_id": [ "GSM1327551" ], "type": "individual", "id": "GDS4966_23" }, { "dataset_id": "GDS4966", "description": "LTBI 6", "sample_id": [ "GSM1327539" ], "type": "individual", "id": "GDS4966_24" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4966", "version": 1.0, "instances": "21", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4966.tab", "compression": "gz" } ], [ [ "GDS4967.tab" ], { "title": "Pyrazinamide effect on pulmonary tuberculosis model : time course", "description": "Analysis of lung from B6D2F1 females infected with Mycobacterium tuberculosis and treated with pyrazinamide (PZA) at 28 days post infection (dpi); samples collected at 42 and 63 dpi. Results provide insight molecular mechanisms underlying PZA modulation of host immune response during Mtb infection.", "type": "Expression profiling by array", "pubmed_id": "24015316", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE48027", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4967", "description": "uninfected", "sample_id": [ "GSM1165956", "GSM1165957", "GSM1165958", "GSM1165959" ], "type": "infection", "id": "GDS4967_1" }, { "dataset_id": "GDS4967", "description": "Mtb", "sample_id": [ "GSM1165960", "GSM1165961", "GSM1165962", "GSM1165963", "GSM1165964", "GSM1165965", "GSM1165966", "GSM1165967", "GSM1165968", "GSM1165969", "GSM1165970", "GSM1165971" ], "type": "infection", "id": "GDS4967_2" }, { "dataset_id": "GDS4967", "description": "control", "sample_id": [ "GSM1165956", "GSM1165957", "GSM1165958", "GSM1165959" ], "type": "time", "id": "GDS4967_3" }, { "dataset_id": "GDS4967", "description": "42 days post infection", "sample_id": [ "GSM1165960", "GSM1165961", "GSM1165962", "GSM1165963", "GSM1165964", "GSM1165965", "GSM1165968", "GSM1165969" ], "type": "time", "id": "GDS4967_4" }, { "dataset_id": "GDS4967", "description": "63 days post infection", "sample_id": [ "GSM1165966", "GSM1165967", "GSM1165970", "GSM1165971" ], "type": "time", "id": "GDS4967_5" }, { "dataset_id": "GDS4967", "description": "untreated", "sample_id": [ "GSM1165956", "GSM1165957", "GSM1165958", "GSM1165959", "GSM1165960", "GSM1165961", "GSM1165962", "GSM1165963", "GSM1165964", "GSM1165965", "GSM1165966", "GSM1165967" ], "type": "agent", "id": "GDS4967_6" }, { "dataset_id": "GDS4967", "description": "pyrazinamide", "sample_id": [ "GSM1165968", "GSM1165969", "GSM1165970", "GSM1165971" ], "type": "agent", "id": "GDS4967_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4967", "version": 1.0, "instances": "16", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4967.tab", "compression": "gz" } ], [ [ "GDS4968.tab" ], { "title": "Monoclonal gammopathies: bone marrow plasma cells", "description": "Analysis of plasma cells from patients with monoclonal gammopathy of undetermined significance (MGUS), smoldering multiple myeloma (MM), or MM. MM is consistently preceded by MGUS/SMM. Results provide insight into molecular mechanisms underlying the transformation from precursor disease to MM.", "type": "Expression profiling by array", "pubmed_id": "24816239", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "99", "value_type": "transformed count", "reference_series": "GSE47552", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4968", "description": "multiple myeloma", "sample_id": [ "GSM1152327", "GSM1152328", "GSM1152329", "GSM1152330", "GSM1152331", "GSM1152332", "GSM1152333", "GSM1152334", "GSM1152335", "GSM1152336", "GSM1152337", "GSM1152338", "GSM1152339", "GSM1152340", "GSM1152341", "GSM1152342", "GSM1152343", "GSM1152344", "GSM1152345", "GSM1152346", "GSM1152347", "GSM1152348", "GSM1152349", "GSM1152309", "GSM1152310", "GSM1152311", "GSM1152312", "GSM1152313", "GSM1152314", "GSM1152315", "GSM1152316", "GSM1152317", "GSM1152318", "GSM1152319", "GSM1152320", "GSM1152321", "GSM1152322", "GSM1152323", "GSM1152324", "GSM1152325", "GSM1152326" ], "type": "disease state", "id": "GDS4968_1" }, { "dataset_id": "GDS4968", "description": "smoldering multiple myeloma", "sample_id": [ "GSM1152355", "GSM1152356", "GSM1152357", "GSM1152358", "GSM1152359", "GSM1152360", "GSM1152361", "GSM1152362", "GSM1152363", "GSM1152364", "GSM1152365", "GSM1152366", "GSM1152367", "GSM1152368", "GSM1152369", "GSM1152370", "GSM1152371", "GSM1152372", "GSM1152373", "GSM1152374", "GSM1152375", "GSM1152376", "GSM1152377", "GSM1152378", "GSM1152379", "GSM1152380", "GSM1152381", "GSM1152382", "GSM1152383", "GSM1152384", "GSM1152385", "GSM1152386", "GSM1152387" ], "type": "disease state", "id": "GDS4968_2" }, { "dataset_id": "GDS4968", "description": "monoclonal gammopathy of undetermined significance", "sample_id": [ "GSM1152303", "GSM1152304", "GSM1152305", "GSM1152306", "GSM1152307", "GSM1152308", "GSM1152289", "GSM1152290", "GSM1152291", "GSM1152292", "GSM1152293", "GSM1152294", "GSM1152295", "GSM1152296", "GSM1152297", "GSM1152298", "GSM1152299", "GSM1152300", "GSM1152301", "GSM1152302" ], "type": "disease state", "id": "GDS4968_3" }, { "dataset_id": "GDS4968", "description": "normal", "sample_id": [ "GSM1152350", "GSM1152351", "GSM1152352", "GSM1152353", "GSM1152354" ], "type": "disease state", "id": "GDS4968_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4968", "version": 1.0, "instances": "99", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4968.tab", "compression": "gz" } ], [ [ "GDS4969.tab" ], { "title": "CD138- and CD138+ MACS-sorted myeloma cell lines", "description": "Analysis of CD138+ and CD138\u2212 cells isolated from 8 multiple myeloma (MM) cell lines. The CD138- fraction is thought to represent MM stem cells. Results provide insight into the molecular bases of the CD138-/+ fractions of the MM cell lines.", "type": "Expression profiling by array", "pubmed_id": "23847194", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE46816", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4969", "description": "CD138-", "sample_id": [ "GSM1138770", "GSM1138772", "GSM1138774", "GSM1138776", "GSM1138778", "GSM1138780", "GSM1138782", "GSM1138784" ], "type": "genotype/variation", "id": "GDS4969_1" }, { "dataset_id": "GDS4969", "description": "CD138+", "sample_id": [ "GSM1138771", "GSM1138773", "GSM1138775", "GSM1138777", "GSM1138779", "GSM1138781", "GSM1138783", "GSM1138785" ], "type": "genotype/variation", "id": "GDS4969_2" }, { "dataset_id": "GDS4969", "description": "ARP1", "sample_id": [ "GSM1138770", "GSM1138771" ], "type": "cell line", "id": "GDS4969_3" }, { "dataset_id": "GDS4969", "description": "CAG", "sample_id": [ "GSM1138772", "GSM1138773" ], "type": "cell line", "id": "GDS4969_4" }, { "dataset_id": "GDS4969", "description": "H929", "sample_id": [ "GSM1138774", "GSM1138775" ], "type": "cell line", "id": "GDS4969_5" }, { "dataset_id": "GDS4969", "description": "KMS28PE", "sample_id": [ "GSM1138776", "GSM1138777" ], "type": "cell line", "id": "GDS4969_6" }, { "dataset_id": "GDS4969", "description": "OCI", "sample_id": [ "GSM1138778", "GSM1138779" ], "type": "cell line", "id": "GDS4969_7" }, { "dataset_id": "GDS4969", "description": "OPM2", "sample_id": [ "GSM1138780", "GSM1138781" ], "type": "cell line", "id": "GDS4969_8" }, { "dataset_id": "GDS4969", "description": "U266", "sample_id": [ "GSM1138782", "GSM1138783" ], "type": "cell line", "id": "GDS4969_9" }, { "dataset_id": "GDS4969", "description": "XG1", "sample_id": [ "GSM1138784", "GSM1138785" ], "type": "cell line", "id": "GDS4969_10" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4969", "version": 1.0, "instances": "16", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4969.tab", "compression": "gz" } ], [ [ "GDS4970.tab" ], { "title": "CD138- and CD138+ FACS-sorted myeloma cell lines", "description": "Analysis of CD138+ and CD138\u2212 cells isolated from 2 multiple myeloma (MM) cell lines. The CD138- cells have greater clonogenic potential than the CD138+ plasma cells and exhibit stem cell properties. Results provide insight into the molecular basis of the CD138- clonogenic population.", "type": "Expression profiling by array", "pubmed_id": "23985559", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE31305", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4970", "description": "CD138-", "sample_id": [ "GSM775748", "GSM775749", "GSM775752", "GSM775753" ], "type": "genotype/variation", "id": "GDS4970_1" }, { "dataset_id": "GDS4970", "description": "CD138+", "sample_id": [ "GSM775750", "GSM775751", "GSM775754", "GSM775755" ], "type": "genotype/variation", "id": "GDS4970_2" }, { "dataset_id": "GDS4970", "description": "NCI-H929", "sample_id": [ "GSM775748", "GSM775749", "GSM775750", "GSM775751" ], "type": "cell line", "id": "GDS4970_3" }, { "dataset_id": "GDS4970", "description": "RPMI-8226", "sample_id": [ "GSM775752", "GSM775753", "GSM775754", "GSM775755" ], "type": "cell line", "id": "GDS4970_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4970", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4970.tab", "compression": "gz" } ], [ [ "GDS4971.tab" ], { "title": "Blood from septic patients: time course", "description": "Analysis of whole blood samples from survivors and non-survivors of sepsis for up to 5 days after their admission to the intensive care unit. Results provide insight into the molecular basis of the immune dysfunction resulting from sepsis.", "type": "Expression profiling by array", "pubmed_id": "23807251", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "163", "value_type": "transformed count", "reference_series": "GSE54514", "order": "none", "update_date": "Jun 30 2014", "subsets": [ { "dataset_id": "GDS4971", "description": "sepsis", "sample_id": [ "GSM1317914", "GSM1317915", "GSM1317916", "GSM1317917", "GSM1317918", "GSM1317919", "GSM1317920", "GSM1317921", "GSM1317922", "GSM1317923", "GSM1317924", "GSM1317925", "GSM1317926", "GSM1317927", "GSM1317928", "GSM1317929", "GSM1317930", "GSM1317931", "GSM1317932", "GSM1317933", "GSM1317934", "GSM1317935", "GSM1317936", "GSM1317937", "GSM1317938", "GSM1317939", "GSM1317940", "GSM1317941", "GSM1317942", "GSM1317943", "GSM1317944", "GSM1317945", "GSM1317946", "GSM1317947", "GSM1317948", "GSM1317949", "GSM1317950", "GSM1317951", "GSM1317952", "GSM1317953", "GSM1317954", "GSM1317955", "GSM1317956", "GSM1317957", "GSM1317958", "GSM1317959", "GSM1317960", "GSM1317961", "GSM1317962", "GSM1317963", "GSM1317964", "GSM1317965", "GSM1317966", "GSM1317967", "GSM1317968", "GSM1317969", "GSM1317970", "GSM1317971", "GSM1317972", "GSM1317973", "GSM1317974", "GSM1317975", "GSM1317976", "GSM1317977", "GSM1317978", "GSM1317979", "GSM1317980", "GSM1317981", "GSM1317982", "GSM1317983", "GSM1317984", "GSM1317985", "GSM1317986", "GSM1317987", "GSM1317988", "GSM1317989", "GSM1317990", "GSM1317991", "GSM1317992", "GSM1317993", "GSM1317994", "GSM1317995", "GSM1317996", "GSM1317997", "GSM1317998", "GSM1317999", "GSM1318000", "GSM1318001", "GSM1318002", "GSM1318003", "GSM1318004", "GSM1318005", "GSM1318006", "GSM1318007", "GSM1318008", "GSM1318009", "GSM1318010", "GSM1318011", "GSM1318012", "GSM1318013", "GSM1318014", "GSM1318015", "GSM1318016", "GSM1318017", "GSM1318018", "GSM1318019", "GSM1318020", "GSM1318021", "GSM1318022", "GSM1318023", "GSM1318024", "GSM1318025", "GSM1318026", "GSM1318027", "GSM1318028", "GSM1318029", "GSM1318030", "GSM1318031", "GSM1318032", "GSM1318033", "GSM1318034", "GSM1318035", "GSM1318036", "GSM1318037", "GSM1318038", "GSM1318039", "GSM1318040" ], "type": "disease state", "id": "GDS4971_1" }, { "dataset_id": "GDS4971", "description": "healthy", "sample_id": [ "GSM1317896", "GSM1317897", "GSM1317898", "GSM1317899", "GSM1317900", "GSM1317901", "GSM1317902", "GSM1317903", "GSM1317904", "GSM1317905", "GSM1317906", "GSM1317907", "GSM1317908", "GSM1317909", "GSM1317910", "GSM1317911", "GSM1317912", "GSM1317913", "GSM1318041", "GSM1318042", "GSM1318043", "GSM1318044", "GSM1318045", "GSM1318046", "GSM1318047", "GSM1318048", "GSM1318049", "GSM1318050", "GSM1318051", "GSM1318052", "GSM1318053", "GSM1318054", "GSM1318055", "GSM1318056", "GSM1318057", "GSM1318058" ], "type": "disease state", "id": "GDS4971_2" }, { "dataset_id": "GDS4971", "description": "control", "sample_id": [ "GSM1317896", "GSM1317897", "GSM1317898", "GSM1317899", "GSM1317900", "GSM1317901", "GSM1317902", "GSM1317903", "GSM1317904", "GSM1317905", "GSM1317906", "GSM1317907", "GSM1317908", "GSM1317909", "GSM1317910", "GSM1317911", "GSM1317912", "GSM1317913", "GSM1318041", "GSM1318042", "GSM1318043", "GSM1318044", "GSM1318045", "GSM1318046", "GSM1318047", "GSM1318048", "GSM1318049", "GSM1318050", "GSM1318051", "GSM1318052", "GSM1318053", "GSM1318054", "GSM1318055", "GSM1318056", "GSM1318057", "GSM1318058" ], "type": "other", "id": "GDS4971_3" }, { "dataset_id": "GDS4971", "description": "survivor", "sample_id": [ "GSM1317945", "GSM1317946", "GSM1317947", "GSM1317948", "GSM1317949", "GSM1317950", "GSM1317951", "GSM1317952", "GSM1317953", "GSM1317954", "GSM1317955", "GSM1317956", "GSM1317957", "GSM1317958", "GSM1317959", "GSM1317960", "GSM1317961", "GSM1317962", "GSM1317963", "GSM1317964", "GSM1317965", "GSM1317966", "GSM1317967", "GSM1317968", "GSM1317969", "GSM1317970", "GSM1317971", "GSM1317972", "GSM1317973", "GSM1317974", "GSM1317975", "GSM1317976", "GSM1317977", "GSM1317978", "GSM1317979", "GSM1317980", "GSM1317981", "GSM1317982", "GSM1317983", "GSM1317984", "GSM1317985", "GSM1317986", "GSM1317987", "GSM1317988", "GSM1317989", "GSM1317990", "GSM1317991", "GSM1317992", "GSM1317993", "GSM1317994", "GSM1317995", "GSM1317996", "GSM1317997", "GSM1317998", "GSM1317999", "GSM1318000", "GSM1318001", "GSM1318002", "GSM1318003", "GSM1318004", "GSM1318005", "GSM1318006", "GSM1318007", "GSM1318008", "GSM1318009", "GSM1318010", "GSM1318011", "GSM1318012", "GSM1318013", "GSM1318014", "GSM1318015", "GSM1318016", "GSM1318017", "GSM1318018", "GSM1318019", "GSM1318020", "GSM1318021", "GSM1318022", "GSM1318023", "GSM1318024", "GSM1318025", "GSM1318026", "GSM1318027", "GSM1318028", "GSM1318029", "GSM1318030", "GSM1318031", "GSM1318032", "GSM1318033", "GSM1318034", "GSM1318035", "GSM1318036", "GSM1318037", "GSM1318038", "GSM1318039", "GSM1318040" ], "type": "other", "id": "GDS4971_4" }, { "dataset_id": "GDS4971", "description": "non-survivor", "sample_id": [ "GSM1317914", "GSM1317915", "GSM1317916", "GSM1317917", "GSM1317918", "GSM1317919", "GSM1317920", "GSM1317921", "GSM1317922", "GSM1317923", "GSM1317924", "GSM1317925", "GSM1317926", "GSM1317927", "GSM1317928", "GSM1317929", "GSM1317930", "GSM1317931", "GSM1317932", "GSM1317933", "GSM1317934", "GSM1317935", "GSM1317936", "GSM1317937", "GSM1317938", "GSM1317939", "GSM1317940", "GSM1317941", "GSM1317942", "GSM1317943", "GSM1317944" ], "type": "other", "id": "GDS4971_5" }, { "dataset_id": "GDS4971", "description": "day 1", "sample_id": [ "GSM1317896", "GSM1317897", "GSM1317898", "GSM1317899", "GSM1317900", "GSM1317901", "GSM1317902", "GSM1317903", "GSM1317904", "GSM1317905", "GSM1317906", "GSM1317907", "GSM1317908", "GSM1317909", "GSM1317910", "GSM1317911", "GSM1317912", "GSM1317913", "GSM1317914", "GSM1317915", "GSM1317916", "GSM1317917", "GSM1317918", "GSM1317919", "GSM1317920", "GSM1317921", "GSM1317922", "GSM1317945", "GSM1317946", "GSM1317947", "GSM1317948", "GSM1317949", "GSM1317950", "GSM1317951", "GSM1317952", "GSM1317953", "GSM1317954", "GSM1317955", "GSM1317956", "GSM1317957", "GSM1317958", "GSM1317959", "GSM1317960", "GSM1317961", "GSM1317962", "GSM1317963", "GSM1317964", "GSM1317965", "GSM1317966", "GSM1317967", "GSM1317968", "GSM1317969", "GSM1317970" ], "type": "time", "id": "GDS4971_6" }, { "dataset_id": "GDS4971", "description": "day 2", "sample_id": [ "GSM1317923", "GSM1317924", "GSM1317925", "GSM1317926", "GSM1317927", "GSM1317928", "GSM1317929", "GSM1317971", "GSM1317972", "GSM1317973", "GSM1317974", "GSM1317975", "GSM1317976", "GSM1317977", "GSM1317978", "GSM1317979", "GSM1317980", "GSM1317981", "GSM1317982", "GSM1317983", "GSM1317984", "GSM1317985", "GSM1317986", "GSM1317987", "GSM1317988", "GSM1317989", "GSM1317990", "GSM1317991", "GSM1317992", "GSM1317993", "GSM1317994" ], "type": "time", "id": "GDS4971_7" }, { "dataset_id": "GDS4971", "description": "day 3", "sample_id": [ "GSM1317930", "GSM1317931", "GSM1317932", "GSM1317933", "GSM1317934", "GSM1317935", "GSM1317936", "GSM1317995", "GSM1317996", "GSM1317997", "GSM1317998", "GSM1317999", "GSM1318000", "GSM1318001", "GSM1318002", "GSM1318003", "GSM1318004", "GSM1318005", "GSM1318006", "GSM1318007", "GSM1318008", "GSM1318009", "GSM1318010", "GSM1318011", "GSM1318012", "GSM1318013", "GSM1318014", "GSM1318015" ], "type": "time", "id": "GDS4971_8" }, { "dataset_id": "GDS4971", "description": "day 4", "sample_id": [ "GSM1317937", "GSM1317938", "GSM1317939", "GSM1317940", "GSM1317941", "GSM1318016", "GSM1318017", "GSM1318018", "GSM1318019", "GSM1318020", "GSM1318021", "GSM1318022", "GSM1318023", "GSM1318024", "GSM1318025", "GSM1318026", "GSM1318027", "GSM1318028", "GSM1318029" ], "type": "time", "id": "GDS4971_9" }, { "dataset_id": "GDS4971", "description": "day 5", "sample_id": [ "GSM1317942", "GSM1317943", "GSM1317944", "GSM1318030", "GSM1318031", "GSM1318032", "GSM1318033", "GSM1318034", "GSM1318035", "GSM1318036", "GSM1318037", "GSM1318038", "GSM1318039", "GSM1318040", "GSM1318041", "GSM1318042", "GSM1318043", "GSM1318044", "GSM1318045", "GSM1318046", "GSM1318047", "GSM1318048", "GSM1318049", "GSM1318050", "GSM1318051", "GSM1318052", "GSM1318053", "GSM1318054", "GSM1318055", "GSM1318056", "GSM1318057", "GSM1318058" ], "type": "time", "id": "GDS4971_10" }, { "dataset_id": "GDS4971", "description": "1", "sample_id": [ "GSM1317896", "GSM1318041" ], "type": "individual", "id": "GDS4971_11" }, { "dataset_id": "GDS4971", "description": "2", "sample_id": [ "GSM1317897", "GSM1318042" ], "type": "individual", "id": "GDS4971_12" }, { "dataset_id": "GDS4971", "description": "3", "sample_id": [ "GSM1317898", "GSM1318043" ], "type": "individual", "id": "GDS4971_13" }, { "dataset_id": "GDS4971", "description": "4", "sample_id": [ "GSM1317899", "GSM1318044" ], "type": "individual", "id": "GDS4971_14" }, { "dataset_id": "GDS4971", "description": "5", "sample_id": [ "GSM1317900", "GSM1318045" ], "type": "individual", "id": "GDS4971_15" }, { "dataset_id": "GDS4971", "description": "6", "sample_id": [ "GSM1317901", "GSM1318046" ], "type": "individual", "id": "GDS4971_16" }, { "dataset_id": "GDS4971", "description": "7", "sample_id": [ "GSM1317902", "GSM1318047" ], "type": "individual", "id": "GDS4971_17" }, { "dataset_id": "GDS4971", "description": "8", "sample_id": [ "GSM1317903", "GSM1318048" ], "type": "individual", "id": "GDS4971_18" }, { "dataset_id": "GDS4971", "description": "9", "sample_id": [ "GSM1317904", "GSM1318049" ], "type": "individual", "id": "GDS4971_19" }, { "dataset_id": "GDS4971", "description": "10", "sample_id": [ "GSM1317905", "GSM1318050" ], "type": "individual", "id": "GDS4971_20" }, { "dataset_id": "GDS4971", "description": "11", "sample_id": [ "GSM1317906", "GSM1318051" ], "type": "individual", "id": "GDS4971_21" }, { "dataset_id": "GDS4971", "description": "12", "sample_id": [ "GSM1317907", "GSM1318052" ], "type": "individual", "id": "GDS4971_22" }, { "dataset_id": "GDS4971", "description": "13", "sample_id": [ "GSM1317908", "GSM1318053" ], "type": "individual", "id": "GDS4971_23" }, { "dataset_id": "GDS4971", "description": "14", "sample_id": [ "GSM1317909", "GSM1318054" ], "type": "individual", "id": "GDS4971_24" }, { "dataset_id": "GDS4971", "description": "15", "sample_id": [ "GSM1317910", "GSM1318055" ], "type": "individual", "id": "GDS4971_25" }, { "dataset_id": "GDS4971", "description": "16", "sample_id": [ "GSM1317911", "GSM1318056" ], "type": "individual", "id": "GDS4971_26" }, { "dataset_id": "GDS4971", "description": "17", "sample_id": [ "GSM1317912", "GSM1318057" ], "type": "individual", "id": "GDS4971_27" }, { "dataset_id": "GDS4971", "description": "18", "sample_id": [ "GSM1317913", "GSM1318058" ], "type": "individual", "id": "GDS4971_28" }, { "dataset_id": "GDS4971", "description": 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"GSM1317919" ], "type": "individual", "id": "GDS4971_35" }, { "dataset_id": "GDS4971", "description": "26", "sample_id": [ "GSM1317920", "GSM1317928", "GSM1317935" ], "type": "individual", "id": "GDS4971_36" }, { "dataset_id": "GDS4971", "description": "27", "sample_id": [ "GSM1317921", "GSM1317929", "GSM1317936" ], "type": "individual", "id": "GDS4971_37" }, { "dataset_id": "GDS4971", "description": "28", "sample_id": [ "GSM1317922" ], "type": "individual", "id": "GDS4971_38" }, { "dataset_id": "GDS4971", "description": "29", "sample_id": [ "GSM1317945" ], "type": "individual", "id": "GDS4971_39" }, { "dataset_id": "GDS4971", "description": "30", "sample_id": [ "GSM1317946", "GSM1317971", "GSM1317995", "GSM1318016", "GSM1318030" ], "type": "individual", "id": "GDS4971_40" }, { "dataset_id": "GDS4971", "description": "31", "sample_id": [ "GSM1317947", "GSM1317972", "GSM1317996" ], "type": "individual", "id": "GDS4971_41" }, { "dataset_id": "GDS4971", "description": "32", "sample_id": [ "GSM1317948", "GSM1317973", "GSM1317997" ], "type": "individual", "id": "GDS4971_42" }, { "dataset_id": "GDS4971", "description": "33", "sample_id": [ "GSM1317949", "GSM1317974", "GSM1317998", "GSM1318017", "GSM1318031" ], "type": "individual", "id": "GDS4971_43" }, { "dataset_id": "GDS4971", "description": "34", "sample_id": [ "GSM1317950", "GSM1317975", "GSM1317999" ], "type": "individual", "id": "GDS4971_44" }, { "dataset_id": "GDS4971", "description": "37", "sample_id": [ "GSM1317953", "GSM1317978" ], "type": "individual", "id": "GDS4971_45" }, { "dataset_id": "GDS4971", "description": "38", "sample_id": [ "GSM1317954", "GSM1317979", "GSM1318002" ], "type": "individual", "id": "GDS4971_46" }, { "dataset_id": "GDS4971", "description": "39", "sample_id": [ "GSM1317955", "GSM1317980", "GSM1318003", "GSM1318019" ], "type": "individual", "id": "GDS4971_47" }, { "dataset_id": "GDS4971", "description": "40", "sample_id": [ "GSM1317956", "GSM1317981" ], "type": "individual", "id": "GDS4971_48" }, { "dataset_id": "GDS4971", "description": "41", "sample_id": [ "GSM1317957", "GSM1317982", "GSM1318020" ], "type": "individual", "id": "GDS4971_49" }, { "dataset_id": "GDS4971", "description": "42", "sample_id": [ "GSM1317958", "GSM1317983", "GSM1318004", "GSM1318021", "GSM1318033" ], "type": "individual", "id": "GDS4971_50" }, { "dataset_id": "GDS4971", "description": "43", "sample_id": [ "GSM1317959", "GSM1317984", "GSM1318005", "GSM1318022", "GSM1318034" ], "type": "individual", "id": "GDS4971_51" }, { "dataset_id": "GDS4971", "description": "44", "sample_id": [ "GSM1317960" ], "type": "individual", "id": "GDS4971_52" }, { "dataset_id": "GDS4971", "description": "45", "sample_id": [ "GSM1317961", "GSM1317985", "GSM1318006", "GSM1318023", "GSM1318035" ], "type": "individual", "id": "GDS4971_53" }, { "dataset_id": "GDS4971", "description": "46", "sample_id": [ "GSM1317962", "GSM1317986", "GSM1318007", "GSM1318024", "GSM1318036" ], "type": "individual", "id": "GDS4971_54" }, { "dataset_id": "GDS4971", "description": "47", "sample_id": [ "GSM1317963", "GSM1317987", "GSM1318008" ], "type": "individual", "id": "GDS4971_55" }, { "dataset_id": "GDS4971", "description": "48", "sample_id": [ "GSM1317964", "GSM1317988", "GSM1318009", "GSM1318025" ], "type": "individual", "id": "GDS4971_56" }, { "dataset_id": "GDS4971", "description": "49", "sample_id": [ "GSM1317965", "GSM1317989", "GSM1318010", "GSM1318026", "GSM1318037" ], "type": "individual", "id": "GDS4971_57" }, { "dataset_id": "GDS4971", "description": "50", "sample_id": [ "GSM1317966", "GSM1317990", "GSM1318011", "GSM1318027", "GSM1318038" ], "type": "individual", "id": "GDS4971_58" }, { "dataset_id": "GDS4971", "description": "51", "sample_id": [ "GSM1317967", "GSM1317991", "GSM1318012", "GSM1318028", "GSM1318039" ], "type": "individual", "id": "GDS4971_59" }, { "dataset_id": "GDS4971", "description": "52", "sample_id": [ "GSM1317968", "GSM1317992", "GSM1318013" ], "type": "individual", "id": "GDS4971_60" }, { "dataset_id": "GDS4971", "description": "53", "sample_id": [ "GSM1317969", "GSM1317993", "GSM1318014" ], "type": "individual", "id": "GDS4971_61" }, { "dataset_id": "GDS4971", "description": "54", "sample_id": [ "GSM1317970", "GSM1317994", "GSM1318015", "GSM1318029", "GSM1318040" ], "type": "individual", "id": "GDS4971_62" }, { "dataset_id": "GDS4971", "description": "36", "sample_id": [ "GSM1317977", "GSM1318001", "GSM1317952" ], "type": "individual", "id": "GDS4971_63" }, { "dataset_id": "GDS4971", "description": "35", "sample_id": [ "GSM1317951", "GSM1317976", "GSM1318000", "GSM1318032", "GSM1318018" ], "type": "individual", "id": "GDS4971_64" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS4971", "version": 1.0, "instances": "163", "variables": 39960, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4971.tab", "compression": "gz" } ], [ [ "GDS4972.tab" ], { "title": "Laccaic acid effect on breast cancer cell line", "description": "Analysis of MCF-7 breast cancer cells treated with laccaic acid A (LCA). LCA, a highly substituted anthraquinone natural product, is a small molecule inhibitor of DNA methyltransferase 1 (Dnmt1). Results provide insight into the degree of selectiveness of LCA\u2019s inhibitory activity on Dnmt1.", "type": "Expression profiling by array", "pubmed_id": "23839987", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE45804", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4972", "description": "control", "sample_id": [ "GSM1115765", "GSM1115767", "GSM1115769" ], "type": "agent", "id": "GDS4972_1" }, { "dataset_id": "GDS4972", "description": "laccaic acid A", "sample_id": [ "GSM1115766", "GSM1115768", "GSM1115770" ], "type": "agent", "id": "GDS4972_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4972", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4972.tab", "compression": "gz" } ], [ [ "GDS4973.tab" ], { "title": "Ubiquitin specific protease 22 depletion effect on embryonic stem cell line", "description": "Analysis of E14 embryonic stem cells (ESCs) depleted for ubiquitin specific protease 22 (Usp22). ESCs depleted of the epigenetic modifying enzyme Usp22 fail to differentiate properly. Results provide insight into the role of Usp22 in ESC differentiation.", "type": "Expression profiling by array", "pubmed_id": "23760504", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE42934", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS4973", "description": "control", "sample_id": [ "GSM1053554", "GSM1053555" ], "type": "protocol", "id": "GDS4973_1" }, { "dataset_id": "GDS4973", "description": "Usp22 depletion", "sample_id": [ "GSM1053556", "GSM1053557" ], "type": "protocol", "id": "GDS4973_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4973", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4973.tab", "compression": "gz" } ], [ [ "GDS4974.tab" ], { "title": "High occupational exposure to nickel: peripheral blood mononuclear cell", "description": "Analysis of peripheral blood mononuclear cells from 8 nickel refinery workers. Occupational exposure to nickel is associated with an increased risk of lung and nasal cancers. Results provide insight into molecular mechanisms underlying nickel carcinogenesis.", "type": "Expression profiling by array", "pubmed_id": "23195993", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE40392", "order": "none", "update_date": "Jul 09 2014", "subsets": [ { "dataset_id": "GDS4974", "description": "low nickel exposure", "sample_id": [ "GSM992693", "GSM992694", "GSM992695", "GSM992696", "GSM992697", "GSM992698", "GSM992699", "GSM992700", "GSM992701", "GSM992702" ], "type": "stress", "id": "GDS4974_1" }, { "dataset_id": "GDS4974", "description": "high nickel exposure", "sample_id": [ "GSM992703", "GSM992704", "GSM992705", "GSM992706", "GSM992707", "GSM992708", "GSM992709", "GSM992710" ], "type": "stress", "id": "GDS4974_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4974", "version": 1.0, "instances": "18", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4974.tab", "compression": "gz" } ], [ [ "GDS4975.tab" ], { "title": "Follicular lymphoma and higher grade diffuse large B-cell lymphoma patients: lymph node tumor biopsies", "description": "Analysis of lymph node tumor from follicular lymphoma (FL) and higher grade diffuse large B-cell lymphoma (DLBCL) patients. Transformation of FL to a more aggressive disease is often followed by rapid progression and death. Results provide insight into the molecular basis of FL transformation.", "type": "Expression profiling by array", "pubmed_id": "24357726", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "81", "value_type": "transformed count", "reference_series": "GSE53820", "order": "none", "update_date": "May 08 2015", "subsets": [ { "dataset_id": "GDS4975", "description": "DLBCL", "sample_id": [ "GSM1301497", "GSM1301537" ], "type": "disease state", "id": "GDS4975_1" }, { "dataset_id": "GDS4975", "description": "DLBCL 50% and FL 50%", "sample_id": [ "GSM1301555", "GSM1301521" ], "type": "disease state", "id": "GDS4975_2" }, { "dataset_id": "GDS4975", "description": "DLBCL 30% and FL 70%", "sample_id": [ "GSM1301501" ], "type": "disease state", "id": "GDS4975_3" }, { "dataset_id": "GDS4975", "description": "DLBCL 10% and FL 90%", "sample_id": [ "GSM1301508" ], "type": "disease state", "id": "GDS4975_4" }, { "dataset_id": "GDS4975", "description": "follicular lymphoma", "sample_id": [ "GSM1301481", "GSM1301482", "GSM1301483", "GSM1301484", "GSM1301485", "GSM1301486", "GSM1301487", "GSM1301488", "GSM1301489", "GSM1301490", "GSM1301491", "GSM1301492", "GSM1301493", "GSM1301494", "GSM1301495", "GSM1301496", "GSM1301498", "GSM1301499", "GSM1301500", "GSM1301502", "GSM1301503", "GSM1301504", "GSM1301505", "GSM1301506", "GSM1301507", "GSM1301509", "GSM1301510", "GSM1301511", "GSM1301512", "GSM1301513", "GSM1301514", "GSM1301515", "GSM1301516", "GSM1301517", "GSM1301518", "GSM1301519", "GSM1301520", "GSM1301522", "GSM1301523", "GSM1301524", "GSM1301525", "GSM1301526", "GSM1301527", "GSM1301528", "GSM1301529", "GSM1301530", "GSM1301531", "GSM1301532", "GSM1301533", "GSM1301534", "GSM1301535", "GSM1301536", "GSM1301538", "GSM1301539", "GSM1301540", "GSM1301541", "GSM1301542", "GSM1301543", "GSM1301544", "GSM1301545", "GSM1301546", "GSM1301547", "GSM1301548", "GSM1301549", "GSM1301550", "GSM1301551", "GSM1301552", "GSM1301553", "GSM1301554", "GSM1301556", "GSM1301557", "GSM1301558", "GSM1301559", "GSM1301560", "GSM1301561" ], "type": "disease state", "id": "GDS4975_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4975", "version": 1.0, "instances": "81", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4975.tab", "compression": "gz" } ], [ [ "GDS4976.tab" ], { "title": "Spleen tyrosine kinase inhibitor effect on diffuse large B-cell lymphoma cell lines: time course", "description": "Analysis of the DHL4 and DHL6 diffuse large B-cell lymphoma (DLBCL) cell lines following treatment with R406, a spleen tyrosine kinase (SYK) inhibitor. SYK is a key component of BCR signaling which is a critical pathway in DLBCL. Results provide insight into the role of SYK in DLBCL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "23764004", "platform": "GPL3921", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE34176", "order": "ordered", "update_date": "May 08 2015", "subsets": [ { "dataset_id": "GDS4976", "description": "DHL4", "sample_id": [ "GSM843460", "GSM843459", "GSM843458", "GSM843472", "GSM843471", "GSM843470", "GSM843454", "GSM843453", "GSM843452", "GSM843466", "GSM843465", "GSM843464", "GSM843448", "GSM843447" ], "type": "cell line", "id": "GDS4976_1" }, { "dataset_id": "GDS4976", "description": "DHL6", "sample_id": [ "GSM843463", "GSM843462", "GSM843461", "GSM843475", "GSM843474", "GSM843473", "GSM843457", "GSM843456", "GSM843455", "GSM843469", "GSM843468", "GSM843467", "GSM843451", "GSM843450", "GSM843449" ], "type": "cell line", "id": "GDS4976_2" }, { "dataset_id": "GDS4976", "description": "control", "sample_id": [ "GSM843448", "GSM843447", "GSM843451", "GSM843450", "GSM843449" ], "type": "agent", "id": "GDS4976_3" }, { "dataset_id": "GDS4976", "description": "R406", "sample_id": [ "GSM843466", "GSM843465", "GSM843464", "GSM843454", "GSM843453", "GSM843452", "GSM843472", "GSM843471", "GSM843470", "GSM843460", "GSM843459", "GSM843458", "GSM843469", "GSM843468", "GSM843467", "GSM843457", "GSM843456", "GSM843455", "GSM843475", "GSM843474", "GSM843473", "GSM843463", "GSM843462", "GSM843461" ], "type": "agent", "id": "GDS4976_4" }, { "dataset_id": "GDS4976", "description": "control", "sample_id": [ "GSM843447", "GSM843448", "GSM843449", "GSM843450", "GSM843451" ], "type": "time", "id": "GDS4976_5" }, { "dataset_id": "GDS4976", "description": "hour 2", "sample_id": [ "GSM843452", "GSM843453", "GSM843454", "GSM843455", "GSM843456", "GSM843457" ], "type": "time", "id": "GDS4976_6" }, { "dataset_id": "GDS4976", "description": "hour 6", "sample_id": [ "GSM843458", "GSM843459", "GSM843460", "GSM843461", "GSM843462", "GSM843463" ], "type": "time", "id": "GDS4976_7" }, { "dataset_id": "GDS4976", "description": "hour 24", "sample_id": [ "GSM843464", "GSM843465", "GSM843466", "GSM843467", "GSM843468", "GSM843469" ], "type": "time", "id": "GDS4976_8" }, { "dataset_id": "GDS4976", "description": "hour 48", "sample_id": [ "GSM843470", "GSM843471", "GSM843472", "GSM843473", "GSM843474", "GSM843475" ], "type": "time", "id": "GDS4976_9" } ], "taxid": "9606", "genes": 13936, "aggregation_function": "mean", "name": "GDS4976", "version": 1.0, "instances": "29", "variables": 13940, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4976.tab", "compression": "gz" } ], [ [ "GDS4977.tab" ], { "title": "Nodular Lymphocyte Predominant Hodgkin Lymphoma and T Cell/Histiocyte Rich Large B Cell Lymphoma: microdissected tumor cells", "description": "Analysis of tumor cells microdissected from frozen sections of nodular lymphocyte predominant Hodgkin lymphoma (NLPHL), T cell/histiocyte rich large B cell lymphoma (THRLBCL), and THRLBCL-like NLPHL. Results provide insight into the molecular relatedness of the lymphoma entities.", "type": "Expression profiling by array", "pubmed_id": "24244368", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE47044", "order": "none", "update_date": "May 15 2015", "subsets": [ { "dataset_id": "GDS4977", "description": "germinal center B cell healthy", "sample_id": [ "GSM1143706", "GSM1143707", "GSM1143708", "GSM1143709", "GSM1143710" ], "type": "cell type", "id": "GDS4977_1" }, { "dataset_id": "GDS4977", "description": "tumor cell NLPHL", "sample_id": [ "GSM1143676", "GSM1143677", "GSM1143678", "GSM1143679", "GSM1143680", "GSM1143681", "GSM1143682", "GSM1143683", "GSM1143684", "GSM1143685" ], "type": "cell type", "id": "GDS4977_2" }, { "dataset_id": "GDS4977", "description": "tumor cell THRLBCL-like NLPHL", "sample_id": [ "GSM1143686", "GSM1143687", "GSM1143688", "GSM1143689", "GSM1143690", "GSM1143691", "GSM1143692", "GSM1143693", "GSM1143694" ], "type": "cell type", "id": "GDS4977_3" }, { "dataset_id": "GDS4977", "description": "tumor cell THRLBCL", "sample_id": [ "GSM1143695", "GSM1143696", "GSM1143697", "GSM1143698", "GSM1143699", "GSM1143700", "GSM1143701", "GSM1143702", "GSM1143703", "GSM1143704", "GSM1143705" ], "type": "cell type", "id": "GDS4977_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4977", "version": 1.0, "instances": "35", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4977.tab", "compression": "gz" } ], [ [ "GDS4978.tab" ], { "title": "Transcription factor Pax5 overexpression in Hodgkin lymphoma cell line L428", "description": "Analysis of classical Hodgkin lymphoma (cHL) cell line L428 stably-transfected with a mifepristone-inducible PAX5-expression system. The L428-PAX5 cells were epigenetically modified by 5-aza-2'-deoxycytidine/TSA treatment. Results provide insight into the role of PAX5 in cHL.", "type": "Expression profiling by array", "pubmed_id": "23842424", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE44244", "order": "none", "update_date": "Jul 09 2014", "subsets": [ { "dataset_id": "GDS4978", "description": "Hodgkin lymphoma L428", "sample_id": [ "GSM1081177", "GSM1081176", "GSM1081175", "GSM1081189", "GSM1081188", "GSM1081187" ], "type": "cell line", "id": "GDS4978_1" }, { "dataset_id": "GDS4978", "description": "Hodgkin lymphoma L428-PAX5", "sample_id": [ "GSM1081180", "GSM1081179", "GSM1081178", "GSM1081192", "GSM1081191", "GSM1081190" ], "type": "cell line", "id": "GDS4978_2" }, { "dataset_id": "GDS4978", "description": "Burkitt lymphoma Namalwa", "sample_id": [ "GSM1081181", "GSM1081182", "GSM1081183" ], "type": "cell line", "id": "GDS4978_3" }, { "dataset_id": "GDS4978", "description": "Burkitt lymphoma Raji", "sample_id": [ "GSM1081184", "GSM1081185", "GSM1081186" ], "type": "cell line", "id": "GDS4978_4" }, { "dataset_id": "GDS4978", "description": "mifepristone", "sample_id": [ "GSM1081180", "GSM1081179", "GSM1081178", "GSM1081177", "GSM1081176", "GSM1081175" ], "type": "protocol", "id": "GDS4978_5" }, { "dataset_id": "GDS4978", "description": "mifepristone + 5-aza-2'-deoxycytidine + trichostatin A", "sample_id": [ "GSM1081189", "GSM1081188", "GSM1081187", "GSM1081192", "GSM1081191", "GSM1081190" ], "type": "protocol", "id": "GDS4978_6" }, { "dataset_id": "GDS4978", "description": "untreated", "sample_id": [ "GSM1081186", "GSM1081185", "GSM1081184", "GSM1081183", "GSM1081182", "GSM1081181" ], "type": "protocol", "id": "GDS4978_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4978", "version": 1.0, "instances": "18", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4978.tab", "compression": "gz" } ], [ [ "GDS4979.tab" ], { "title": "Lapatinib effect on lapatinib-resistant ErbB2-positive cell line: dose response", "description": "Analysis of lapatinib-resistant ErbB2-positive cells treated with 0.1 or 1 uM lapatinib. Lapatinib is an EGFR/ErbB2 inhibitor used to treat ErbB2\u2010positive advanced or metastatic breast cancer. Results provide insight into the mechanisms underlying the development of resistance to lapatinib.", "type": "Expression profiling by array", "pubmed_id": "22864381", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE38376", "order": "none", "update_date": "Jun 09 2014", "subsets": [ { "dataset_id": "GDS4979", "description": "lapatinib sensitive", "sample_id": [ "GSM940873", "GSM940874", "GSM940875", "GSM940876", "GSM940877", "GSM940878", "GSM940879", "GSM940880", "GSM940881" ], "type": "cell type", "id": "GDS4979_1" }, { "dataset_id": "GDS4979", "description": "lapatinib resistant", "sample_id": [ "GSM940882", "GSM940883", "GSM940884", "GSM940885", "GSM940886", "GSM940887", "GSM940888", "GSM940889", "GSM940890" ], "type": "cell type", "id": "GDS4979_2" }, { "dataset_id": "GDS4979", "description": "0 uM lapatinib", "sample_id": [ "GSM940873", "GSM940874", "GSM940875", "GSM940882", "GSM940883", "GSM940884" ], "type": "dose", "id": "GDS4979_3" }, { "dataset_id": "GDS4979", "description": "0.1 uM lapatinib", "sample_id": [ "GSM940876", "GSM940877", "GSM940878", "GSM940885", "GSM940886", "GSM940887" ], "type": "dose", "id": "GDS4979_4" }, { "dataset_id": "GDS4979", "description": "1 uM lapatinib", "sample_id": [ "GSM940879", "GSM940880", "GSM940881", "GSM940888", "GSM940889", "GSM940890" ], "type": "dose", "id": "GDS4979_5" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS4979", "version": 1.0, "instances": "18", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4979.tab", "compression": "gz" } ], [ [ "GDS498.tab" ], { "title": "Inflammatory cytokine effect on primary lung endothelial cells", "description": "Examination of gene expression induced by interferon gamma (IFNg), tumor necrosis factor alpha (TNFa) and interleukin 4 (IL4) inflammatory cytokines on primary lung endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "15749026", "platform": "GPL371", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37331", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE569", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS498", "description": "IFNg", "sample_id": [ "GSM8749" ], "type": "agent", "id": "GDS498_1" }, { "dataset_id": "GDS498", "description": "TNFa", "sample_id": [ "GSM8754" ], "type": "agent", "id": "GDS498_2" }, { "dataset_id": "GDS498", "description": "IL4", "sample_id": [ "GSM8759" ], "type": "agent", "id": "GDS498_3" } ], "taxid": "9606", "genes": 20031, "aggregation_function": "mean", "name": "GDS498", "version": 1.0, "instances": "3", "variables": 20033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS498.tab", "compression": "gz" } ], [ [ "GDS4980.tab" ], { "title": "Light-induced retinal damage", "description": "Analysis of neurosensory retinas and retinal pigment epithelia from animals whose retinas were damaged by exposure to 10,000 lux cold white fluorescent light. Results provide insight into the molecular changes produced by damaging light levels in the retina.", "type": "Expression profiling by array", "pubmed_id": "22736611", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE37773", "order": "none", "update_date": "Jun 09 2014", "subsets": [ { "dataset_id": "GDS4980", "description": "neurosensory retina", "sample_id": [ "GSM928109", "GSM928110", "GSM928111", "GSM928112", "GSM928113", "GSM928114", "GSM928115", "GSM928116" ], "type": "tissue", "id": "GDS4980_1" }, { "dataset_id": "GDS4980", "description": "retinal pigment epithelium", "sample_id": [ "GSM928117", "GSM928118", "GSM928119", "GSM928120", "GSM928121", "GSM928122", "GSM928123", "GSM928124" ], "type": "tissue", "id": "GDS4980_2" }, { "dataset_id": "GDS4980", "description": "control", "sample_id": [ "GSM928109", "GSM928110", "GSM928111", "GSM928112", "GSM928117", "GSM928118", "GSM928119", "GSM928120" ], "type": "agent", "id": "GDS4980_3" }, { "dataset_id": "GDS4980", "description": "light", "sample_id": [ "GSM928113", "GSM928114", "GSM928115", "GSM928116", "GSM928121", "GSM928122", "GSM928123", "GSM928124" ], "type": "agent", "id": "GDS4980_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4980", "version": 1.0, "instances": "16", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4980.tab", "compression": "gz" } ], [ [ "GDS4981.tab" ], { "title": "Airway epithelial cell response to IL-13 in vitro", "description": "Analysis of cultured airway epithelial cells (AECs) treated with IL-13 for 21 days. IL-13 induces mucous production. Excess airway mucous secretion is a feature of chronic lung diseases. Results provide insight into the molecular processes responsible for mucous production driven by IL-13 in AECs.", "type": "Expression profiling by array", "pubmed_id": "23187130", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE37693", "order": "none", "update_date": "Jun 09 2014", "subsets": [ { "dataset_id": "GDS4981", "description": "control", "sample_id": [ "GSM925689", "GSM925690", "GSM925691", "GSM925692" ], "type": "agent", "id": "GDS4981_1" }, { "dataset_id": "GDS4981", "description": "IL-13", "sample_id": [ "GSM925693", "GSM925694", "GSM925695", "GSM925696" ], "type": "agent", "id": "GDS4981_2" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS4981", "version": 1.0, "instances": "8", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4981.tab", "compression": "gz" } ], [ [ "GDS4982.tab" ], { "title": "Non-Hodgkin\u2019s lymphoma cell lines response to antibodies against CD20 or B-cell receptor", "description": "Analysis of NHL lines treated with CD20 or B-cell receptor (BCR) antibodies. CD20 is a B cell-specific, cell surface protein; BCR has a key role in B cell development. Results provide insight into concordance in molecular changes following BCR activation and anti-CD20 Ab treatment in lymphoma cells.", "type": "Expression profiling by array", "pubmed_id": "21364752", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "96", "value_type": "count", "reference_series": "GSE23394", "order": "none", "update_date": "Apr 26 2016", "subsets": [ { "dataset_id": "GDS4982", "description": "Oci-Ly18", "sample_id": [ "GSM573720", "GSM573721", "GSM573722", "GSM573786", "GSM573787", "GSM573788", "GSM573723", "GSM573724", "GSM573725", "GSM573729", "GSM573730", "GSM573731", "GSM573726", "GSM573727", "GSM573728", "GSM573789", "GSM573790", "GSM573791", "GSM573732", "GSM573733", "GSM573734", "GSM573735", "GSM573736", "GSM573737" ], "type": "cell line", "id": "GDS4982_1" }, { "dataset_id": "GDS4982", "description": "Rec-1", "sample_id": [ "GSM573756", "GSM573757", "GSM573758", "GSM573759", "GSM573760", "GSM573761", "GSM573765", "GSM573766", "GSM573767", "GSM573768", "GSM573769", "GSM573770", "GSM573774", "GSM573775", "GSM573776", "GSM573771", "GSM573772", "GSM573773", "GSM573762", "GSM573763", "GSM573764", "GSM573777", "GSM573778", "GSM573779" ], "type": "cell line", "id": "GDS4982_2" }, { "dataset_id": "GDS4982", "description": "SU-DHL4", "sample_id": [ "GSM573702", "GSM573703", "GSM573704", "GSM573783", "GSM573784", "GSM573785", "GSM573705", "GSM573706", "GSM573707", "GSM573711", "GSM573712", "GSM573713", "GSM573708", "GSM573709", "GSM573710", "GSM573780", "GSM573781", "GSM573782", "GSM573714", "GSM573715", "GSM573716", "GSM573717", "GSM573718", "GSM573719" ], "type": "cell line", "id": "GDS4982_3" }, { "dataset_id": "GDS4982", "description": "Z-138", "sample_id": [ "GSM573738", "GSM573739", "GSM573740", "GSM573792", "GSM573793", "GSM573794", "GSM573741", "GSM573742", "GSM573743", "GSM573747", "GSM573748", "GSM573749", "GSM573744", "GSM573745", "GSM573746", "GSM573795", "GSM573796", "GSM573797", "GSM573750", "GSM573751", "GSM573752", "GSM573753", "GSM573754", "GSM573755" ], "type": "cell line", "id": "GDS4982_4" }, { "dataset_id": "GDS4982", "description": "Rituximab", "sample_id": [ "GSM573726", "GSM573727", "GSM573728", "GSM573768", "GSM573769", "GSM573770", "GSM573708", "GSM573709", "GSM573710", "GSM573744", "GSM573745", "GSM573746" ], "type": "agent", "id": "GDS4982_5" }, { "dataset_id": "GDS4982", "description": "LT20", "sample_id": [ "GSM573729", "GSM573730", "GSM573731", "GSM573765", "GSM573766", "GSM573767", "GSM573711", "GSM573712", "GSM573713", "GSM573747", "GSM573748", "GSM573749" ], "type": "agent", "id": "GDS4982_6" }, { "dataset_id": "GDS4982", "description": "Anti-IgM-F (ab')2", "sample_id": [ "GSM573735", "GSM573736", "GSM573737", "GSM573777", "GSM573778", "GSM573779", "GSM573717", "GSM573718", "GSM573719", "GSM573753", "GSM573754", "GSM573755" ], "type": "agent", "id": "GDS4982_7" }, { "dataset_id": "GDS4982", "description": "Anti-IgM", "sample_id": [ "GSM573732", "GSM573733", "GSM573734", "GSM573762", "GSM573763", "GSM573764", "GSM573714", "GSM573715", "GSM573716", "GSM573750", "GSM573751", "GSM573752" ], "type": "agent", "id": "GDS4982_8" }, { "dataset_id": "GDS4982", "description": "Anti-IgG", "sample_id": [ "GSM573789", "GSM573790", "GSM573791", "GSM573771", "GSM573772", "GSM573773", "GSM573780", "GSM573781", "GSM573782", "GSM573795", "GSM573796", "GSM573797" ], "type": "agent", "id": "GDS4982_9" }, { "dataset_id": "GDS4982", "description": "Isotype/ human IgG", "sample_id": [ "GSM573723", "GSM573724", "GSM573725", "GSM573759", "GSM573760", "GSM573761", "GSM573705", "GSM573706", "GSM573707", "GSM573741", "GSM573742", "GSM573743" ], "type": "agent", "id": "GDS4982_10" }, { "dataset_id": "GDS4982", "description": "Rituximab-Fab2", "sample_id": [ "GSM573774", "GSM573775", "GSM573776" ], "type": "agent", "id": "GDS4982_11" }, { "dataset_id": "GDS4982", "description": "untreated control", "sample_id": [ "GSM573720", "GSM573721", "GSM573722", "GSM573786", "GSM573787", "GSM573788", "GSM573756", "GSM573757", "GSM573758", "GSM573702", "GSM573703", "GSM573704", "GSM573783", "GSM573784", "GSM573785", "GSM573738", "GSM573739", "GSM573740", "GSM573792", "GSM573793", "GSM573794" ], "type": "agent", "id": "GDS4982_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4982", "version": 1.0, "instances": "96", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4982.tab", "compression": "gz" } ], [ [ "GDS4983.tab" ], { "title": "Adriamycin in vitro effect on E\u00b5-myc transgenic lymphoma cells deficient in Suv39h1", "description": "Analysis of lymphoma cells isolated from E\u00b5-myc mice deficient in H3K9 histone methyltransferase Suv39h1 and treated in vitro with anticancer drug ADR. ADR induces therapy-induced senescence (TIS) in Suv39h1-proficient lymphomas. Results provide insight into the impact of Suv39h1 on TIS induction.", "type": "Expression profiling by array", "pubmed_id": "23945590", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE44355", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4983", "description": "Adriamycin", "sample_id": [ "GSM1083875", "GSM1083873", "GSM1083871", "GSM1083879", "GSM1083877" ], "type": "agent", "id": "GDS4983_1" }, { "dataset_id": "GDS4983", "description": "control", "sample_id": [ "GSM1083874", "GSM1083872", "GSM1083870", "GSM1083878", "GSM1083876" ], "type": "agent", "id": "GDS4983_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4983", "version": 1.0, "instances": "10", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4983.tab", "compression": "gz" } ], [ [ "GDS4984.tab" ], { "title": "IGHV mutated/unmutated Mantle Cell Lymphoma patients: B cell lymphocytes", "description": "Analysis of B cell lymphocytes from Mantle Cell Lymphoma (MCL) patients with unmutated or mutated immunoglobulin heavy chain variable (IGHV) genes. Results provide insight into the effect of IGHV mutational status on MCL clinical features.", "type": "Expression profiling by array", "pubmed_id": [ "22915760", "25092176" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "transformed count", "reference_series": "GSE36000", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS4984", "description": "IGHV unmutated", "sample_id": [ "GSM879154", "GSM879148", "GSM879126", "GSM879140", "GSM879125", "GSM879118", "GSM879155", "GSM879147", "GSM879122", "GSM879120", "GSM879119", "GSM879121", "GSM879127", "GSM879129" ], "type": "genotype/variation", "id": "GDS4984_1" }, { "dataset_id": "GDS4984", "description": "IGHV mutated", "sample_id": [ "GSM879153", "GSM879151", "GSM879152", "GSM879150", "GSM879149", "GSM879141", "GSM879134", "GSM879133", "GSM879142", "GSM879143", "GSM879139", "GSM879138", "GSM879137", "GSM879124", "GSM879123", "GSM879135", "GSM879145", "GSM879136", "GSM879132", "GSM879131", "GSM879130", "GSM879146", "GSM879128", "GSM879144" ], "type": "genotype/variation", "id": "GDS4984_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4984", "version": 1.0, "instances": "38", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4984.tab", "compression": "gz" } ], [ [ "GDS4985.tab" ], { "title": "Phorbol ester effect on skin of Rho exchange factor Vav2/Vav3 double knockout mutants: time course", "description": "Analysis of the back skin of Rho exchange factor Vav2-/-;Vav3-/- mutants that were treated with either one or four daily applications of phorbol ester 12-O-tetradecanoylphorbol-13-acetate (TPA). Results provide insight into the role of exchange factors Vav2 and Vav3 in TPA-triggered skin tumors.", "type": "Expression profiling by array", "pubmed_id": "23935450", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "transformed count", "reference_series": "GSE40849", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4985", "description": "Vav2-/-;Vav3-/-", "sample_id": [ "GSM1003241", "GSM1003240", "GSM1003244", "GSM1003243", "GSM1003242", "GSM1003247", "GSM1003246", "GSM1003245" ], "type": "genotype/variation", "id": "GDS4985_1" }, { "dataset_id": "GDS4985", "description": "wild type", "sample_id": [ "GSM1003250", "GSM1003249", "GSM1003248", "GSM1003253", "GSM1003252", "GSM1003251", "GSM1003256", "GSM1003255", "GSM1003254" ], "type": "genotype/variation", "id": "GDS4985_2" }, { "dataset_id": "GDS4985", "description": "TPA", "sample_id": [ "GSM1003253", "GSM1003252", "GSM1003251", "GSM1003256", "GSM1003255", "GSM1003254", "GSM1003244", "GSM1003243", "GSM1003242", "GSM1003247", "GSM1003246", "GSM1003245" ], "type": "agent", "id": "GDS4985_3" }, { "dataset_id": "GDS4985", "description": "control", "sample_id": [ "GSM1003250", "GSM1003249", "GSM1003248", "GSM1003241", "GSM1003240" ], "type": "agent", "id": "GDS4985_4" }, { "dataset_id": "GDS4985", "description": "1 application", "sample_id": [ "GSM1003250", "GSM1003249", "GSM1003248", "GSM1003253", "GSM1003252", "GSM1003251", "GSM1003241", "GSM1003240", "GSM1003244", "GSM1003243", "GSM1003242" ], "type": "protocol", "id": "GDS4985_5" }, { "dataset_id": "GDS4985", "description": "4 daily applications", "sample_id": [ "GSM1003247", "GSM1003246", "GSM1003245", "GSM1003256", "GSM1003255", "GSM1003254" ], "type": "protocol", "id": "GDS4985_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4985", "version": 1.0, "instances": "17", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4985.tab", "compression": "gz" } ], [ [ "GDS4986.tab" ], { "title": "Tumor-infiltrating CD8 T cells silenced for negative regulators of T cells", "description": "Analysis of CD8 T cells that were transduced with shRNAs targeting inhibitors of T-cell function, adoptively transferred into B16 tumor-bearing mice, and purified from spleen or tumor 7 days later. Results provide insight into molecular mechanisms blocking cytotoxic T cell infiltration into tumors.", "type": "Expression profiling by array", "pubmed_id": "24476824", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE53388", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4986", "description": "shRNA Lacz transduced (control)", "sample_id": [ "GSM1290674", "GSM1290675", "GSM1290676", "GSM1290692", "GSM1290693", "GSM1290694" ], "type": "protocol", "id": "GDS4986_1" }, { "dataset_id": "GDS4986", "description": "shRNA Ppp2r2d transduced", "sample_id": [ "GSM1290677", "GSM1290678", "GSM1290679", "GSM1290695", "GSM1290696", "GSM1290697" ], "type": "protocol", "id": "GDS4986_2" }, { "dataset_id": "GDS4986", "description": "shRNA Egr2 transduced", "sample_id": [ "GSM1290680", "GSM1290681", "GSM1290682", "GSM1290698", "GSM1290699", "GSM1290700" ], "type": "protocol", "id": "GDS4986_3" }, { "dataset_id": "GDS4986", "description": "shRNA Ptpn2 transduced", "sample_id": [ "GSM1290683", "GSM1290684", "GSM1290685", "GSM1290701", "GSM1290702", "GSM1290703" ], "type": "protocol", "id": "GDS4986_4" }, { "dataset_id": "GDS4986", "description": "shRNA Arhgap5 transduced", "sample_id": [ "GSM1290686", "GSM1290687", "GSM1290688", "GSM1290704", "GSM1290705", "GSM1290706" ], "type": "protocol", "id": "GDS4986_5" }, { "dataset_id": "GDS4986", "description": "shRNA Alk transduced", "sample_id": [ "GSM1290689", "GSM1290690", "GSM1290691", "GSM1290707", "GSM1290708", "GSM1290709" ], "type": "protocol", "id": "GDS4986_6" }, { "dataset_id": "GDS4986", "description": "tumor", "sample_id": [ "GSM1290692", "GSM1290693", "GSM1290694", "GSM1290695", "GSM1290696", "GSM1290697", "GSM1290698", "GSM1290699", "GSM1290700", "GSM1290701", "GSM1290702", "GSM1290703", "GSM1290704", "GSM1290705", "GSM1290706", "GSM1290707", "GSM1290708", "GSM1290709" ], "type": "tissue", "id": "GDS4986_7" }, { "dataset_id": "GDS4986", "description": "spleen", "sample_id": [ "GSM1290674", "GSM1290675", "GSM1290676", "GSM1290677", "GSM1290678", "GSM1290679", "GSM1290680", "GSM1290681", "GSM1290682", "GSM1290683", "GSM1290684", "GSM1290685", "GSM1290686", "GSM1290687", "GSM1290688", "GSM1290689", "GSM1290690", "GSM1290691" ], "type": "tissue", "id": "GDS4986_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS4986", "version": 1.0, "instances": "36", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4986.tab", "compression": "gz" } ], [ [ "GDS4987.tab" ], { "title": "Polycystic ovary syndrome: proliferative phase endometrial cell types", "description": "Analysis of FACS-sorted endometrial cell types from proliferative phase endometrial biopsies collected from overweight/obese women with PCOS. Results provide insight into the molecular mechanisms underlying an endometrial disease phenotype in women with PCOS.", "type": "Expression profiling by array", "pubmed_id": "23824412", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "transformed count", "reference_series": "GSE48301", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4987", "description": "polycystic ovary syndrome", "sample_id": [ "GSM1174423", "GSM1174424", "GSM1174425", "GSM1174426", "GSM1174427", "GSM1174428", "GSM1174429", "GSM1174430", "GSM1174431", "GSM1174432", "GSM1174433", "GSM1174434", "GSM1174435", "GSM1174436" ], "type": "disease state", "id": "GDS4987_1" }, { "dataset_id": "GDS4987", "description": "control", "sample_id": [ "GSM1174408", "GSM1174409", "GSM1174410", "GSM1174411", "GSM1174412", "GSM1174413", "GSM1174414", "GSM1174415", "GSM1174416", "GSM1174417", "GSM1174418", "GSM1174419", "GSM1174420", "GSM1174421", "GSM1174422" ], "type": "disease state", "id": "GDS4987_2" }, { "dataset_id": "GDS4987", "description": "endothelial cell", "sample_id": [ "GSM1174425", "GSM1174429", "GSM1174436", "GSM1174414", "GSM1174418", "GSM1174421", "GSM1174409" ], "type": "cell type", "id": "GDS4987_3" }, { "dataset_id": "GDS4987", "description": "epithelial cell", "sample_id": [ "GSM1174412", "GSM1174416", "GSM1174419", "GSM1174427", "GSM1174430", "GSM1174432", "GSM1174435" ], "type": "cell type", "id": "GDS4987_4" }, { "dataset_id": "GDS4987", "description": "mesenchymal cell", "sample_id": [ "GSM1174413", "GSM1174417", "GSM1174420", "GSM1174408", "GSM1174424", "GSM1174428", "GSM1174433" ], "type": "cell type", "id": "GDS4987_5" }, { "dataset_id": "GDS4987", "description": "stromal cell", "sample_id": [ "GSM1174411", "GSM1174415", "GSM1174422", "GSM1174410", "GSM1174423", "GSM1174426", "GSM1174431", "GSM1174434" ], "type": "cell type", "id": "GDS4987_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4987", "version": 1.0, "instances": "29", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4987.tab", "compression": "gz" } ], [ [ "GDS4988.tab" ], { "title": "Secreted frizzled-related protein 5 mutation effect on gonadal white adipose tissue", "description": "Analysis of gonadal white adipose tissues (WATs) of secreted frizzled-related protein 5 (Sfrp5) mutants. Sfrp5 expression increases during adipogenesis and in the WATs of obese mice. The Sfrp5 mutation is a premature stop codon at Gln7. Results provide insight into the role of Sfrp5 in WAT biology.", "type": "Expression profiling by array", "pubmed_id": "22728933", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE37514", "order": "none", "update_date": "Jun 11 2014", "subsets": [ { "dataset_id": "GDS4988", "description": "wild type", "sample_id": [ "GSM921326", "GSM921327", "GSM921328", "GSM921329", "GSM921330", "GSM921331", "GSM921332" ], "type": "genotype/variation", "id": "GDS4988_1" }, { "dataset_id": "GDS4988", "description": "Srfp5 mutation", "sample_id": [ "GSM921333", "GSM921334", "GSM921335", "GSM921336", "GSM921337", "GSM921338", "GSM921339", "GSM921340" ], "type": "genotype/variation", "id": "GDS4988_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4988", "version": 1.0, "instances": "15", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4988.tab", "compression": "gz" } ], [ [ "GDS4989.tab" ], { "title": "PGC1alpha depletion effect on melanoma cell line", "description": "Analysis of A375P melanoma cells depleted for PGC1alpha. PGC1alpha is a transcriptional coactivator that promotes mitochondrial biogenesis and respiration. A375P is a cell line that overexpresses PGC1alpha. Results provide insight into the role of PGC1alpha in melanoma.", "type": "Expression profiling by array", "pubmed_id": "23416000", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE36879", "order": "none", "update_date": "Jun 11 2014", "subsets": [ { "dataset_id": "GDS4989", "description": "control", "sample_id": [ "GSM904724", "GSM904725", "GSM904726", "GSM904727" ], "type": "protocol", "id": "GDS4989_1" }, { "dataset_id": "GDS4989", "description": "PGC1a depletion", "sample_id": [ "GSM904728", "GSM904729", "GSM904730", "GSM904731" ], "type": "protocol", "id": "GDS4989_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS4989", "version": 1.0, "instances": "8", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4989.tab", "compression": "gz" } ], [ [ "GDS499.tab" ], { "title": "Inflammatory cytokine effect on primary aortic endothelial cells", "description": "Examination of gene expression induced by interferon gamma (IFNg), tumor necrosis factor alpha (TNFa) and interleukin 4 (IL4) inflammatory cytokines on primary aortic endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "15749026", "platform": "GPL371", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37331", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE569", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS499", "description": "IFNg", "sample_id": [ "GSM8750" ], "type": "agent", "id": "GDS499_1" }, { "dataset_id": "GDS499", "description": "TNFa", "sample_id": [ "GSM8755" ], "type": "agent", "id": "GDS499_2" }, { "dataset_id": "GDS499", "description": "IL4", "sample_id": [ "GSM8760" ], "type": "agent", "id": "GDS499_3" } ], "taxid": "9606", "genes": 20031, "aggregation_function": "mean", "name": "GDS499", "version": 1.0, "instances": "3", "variables": 20033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS499.tab", "compression": "gz" } ], [ [ "GDS4990.tab" ], { "title": "Diabetic db/db heart response to rosiglitazone", "description": "Analysis of hearts from obese diabetic C57BL/KsJ-db/db mice following treatment with rosiglitazone, a medication for type 2 diabetes. Results provide insight into the molecular basis of the cardiac decompensation associated with both diabetes and rosiglitazone treatment.", "type": "Expression profiling by array", "pubmed_id": "18648539", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log10 ratio", "reference_series": "GSE36875", "order": "none", "update_date": "Jun 11 2014", "subsets": [ { "dataset_id": "GDS4990", "description": "db/+", "sample_id": [ "GSM904674", "GSM904675", "GSM904676", "GSM904677", "GSM904678" ], "type": "genotype/variation", "id": "GDS4990_1" }, { "dataset_id": "GDS4990", "description": "db/db", "sample_id": [ "GSM904679", "GSM904680", "GSM904681", "GSM904682", "GSM904683", "GSM904684", "GSM904685", "GSM904686", "GSM904687", "GSM904688" ], "type": "genotype/variation", "id": "GDS4990_2" }, { "dataset_id": "GDS4990", "description": "rosiglitazone", "sample_id": [ "GSM904684", "GSM904685", "GSM904686", "GSM904687", "GSM904688" ], "type": "agent", "id": "GDS4990_3" }, { "dataset_id": "GDS4990", "description": "none", "sample_id": [ "GSM904674", "GSM904675", "GSM904676", "GSM904677", "GSM904678", "GSM904679", "GSM904680", "GSM904681", "GSM904682", "GSM904683" ], "type": "agent", "id": "GDS4990_4" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS4990", "version": 1.0, "instances": "15", "variables": 28103, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4990.tab", "compression": "gz" } ], [ [ "GDS4991.tab" ], { "title": "Glyoxalase 1 overexpression effect on the brain", "description": "Analysis of brains from C57BL/6J transgenics overexpressing glyoxalase 1 (Glo1). Glo1 is a cytosolic enzyme that catabolizes acyclic alpha-oxoaldehydes, particularly methylglyoxal. Results provide insight into the effect of Glo1 on anxiety-like behavior.", "type": "Expression profiling by array", "pubmed_id": "22585572", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE36819", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS4991", "description": "wild type", "sample_id": [ "GSM902380", "GSM902381", "GSM902382", "GSM902383", "GSM902384" ], "type": "genotype/variation", "id": "GDS4991_1" }, { "dataset_id": "GDS4991", "description": "Glo1 transgenic", "sample_id": [ "GSM902375", "GSM902376", "GSM902377", "GSM902378", "GSM902379" ], "type": "genotype/variation", "id": "GDS4991_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4991", "version": 1.0, "instances": "10", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4991.tab", "compression": "gz" } ], [ [ "GDS4992.tab" ], { "title": "Cholestatic intestinal injury model: jejunum", "description": "Analysis of jejunum from AJ and C57BL6J males with common bile duct ligation (CBDL). The two strains demonstrate different rates of cholestasis-related bacterial translocation and mortality. Results provide insight into molecular pathways underlying intestinal injury following cholestasis.", "type": "Expression profiling by array", "pubmed_id": "24179676", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE47099", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4992", "description": "C57BL6J", "sample_id": [ "GSM1144768", "GSM1144769", "GSM1144770", "GSM1144777", "GSM1144778", "GSM1144779" ], "type": "strain", "id": "GDS4992_1" }, { "dataset_id": "GDS4992", "description": "A/J", "sample_id": [ "GSM1144774", "GSM1144775", "GSM1144776", "GSM1144771", "GSM1144772", "GSM1144773" ], "type": "strain", "id": "GDS4992_2" }, { "dataset_id": "GDS4992", "description": "common bile duct ligation surgery", "sample_id": [ "GSM1144776", "GSM1144775", "GSM1144774", "GSM1144770", "GSM1144769", "GSM1144768" ], "type": "protocol", "id": "GDS4992_3" }, { "dataset_id": "GDS4992", "description": "sham surgery", "sample_id": [ "GSM1144779", "GSM1144778", "GSM1144777", "GSM1144773", "GSM1144772", "GSM1144771" ], "type": "protocol", "id": "GDS4992_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4992", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4992.tab", "compression": "gz" } ], [ [ "GDS4994.tab" ], { "title": "IFN\u03b2-1a in vivo treatment effect on CIS multiple sclerosis patients: peripheral blood mononuclear cells", "description": "Analysis of PBMCs from patients with clinically isolated syndrome suggestive of multiple sclerosis (CIS) after 12 months of IFN\u03b2-1a treatment. All patients exhibited a favorable response to IFN-\u03b2-1a treatment. Results provide insight into the role of endogenous IFN-\u03b2 in the pathogenesis of MS.", "type": "Expression profiling by array", "pubmed_id": "24850724", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE53716", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS4994", "description": "baseline", "sample_id": [ "GSM1299345", "GSM1299343", "GSM1299341", "GSM1299339", "GSM1299337", "GSM1299335" ], "type": "protocol", "id": "GDS4994_1" }, { "dataset_id": "GDS4994", "description": "IFN\u03b2-1a in vivo treatment", "sample_id": [ "GSM1299346", "GSM1299344", "GSM1299342", "GSM1299340", "GSM1299338", "GSM1299336" ], "type": "protocol", "id": "GDS4994_2" }, { "dataset_id": "GDS4994", "description": "AEP", "sample_id": [ "GSM1299346", "GSM1299345" ], "type": "individual", "id": "GDS4994_3" }, { "dataset_id": "GDS4994", "description": "DK", "sample_id": [ "GSM1299344", "GSM1299343" ], "type": "individual", "id": "GDS4994_4" }, { "dataset_id": "GDS4994", "description": "KM", "sample_id": [ "GSM1299342", "GSM1299341" ], "type": "individual", "id": "GDS4994_5" }, { "dataset_id": "GDS4994", "description": "PS", "sample_id": [ "GSM1299340", "GSM1299339" ], "type": "individual", "id": "GDS4994_6" }, { "dataset_id": "GDS4994", "description": "RS", "sample_id": [ "GSM1299338", "GSM1299337" ], "type": "individual", "id": "GDS4994_7" }, { "dataset_id": "GDS4994", "description": "WSD", "sample_id": [ "GSM1299336", "GSM1299335" ], "type": "individual", "id": "GDS4994_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS4994", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4994.tab", "compression": "gz" } ], [ [ "GDS4995.tab" ], { "title": "Scleroderma-associated interstitial lung disease patients: pulmonary fibroblasts", "description": "Analysis of lung fibroblasts isolated from biopsies, taken at the time of diagnosis, from patients with well-defined pulmonary fibrosis associated with systemic sclerosis (SSc-ILD). Results provide insight into the molecular mechanisms underlying the fibrotic fibroblast phenotype in SSc-ILD.", "type": "Expression profiling by array", "pubmed_id": "23915349", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE40839", "order": "none", "update_date": "May 04 2015", "subsets": [ { "dataset_id": "GDS4995", "description": "scleroderma-associated interstitial lung disease", "sample_id": [ "GSM1003068", "GSM1003069", "GSM1003070", "GSM1003071", "GSM1003072", "GSM1003073", "GSM1003074", "GSM1003075" ], "type": "disease state", "id": "GDS4995_1" }, { "dataset_id": "GDS4995", "description": "usual interstitial pneumonia", "sample_id": [ "GSM1003076", "GSM1003077", "GSM1003078" ], "type": "disease state", "id": "GDS4995_2" }, { "dataset_id": "GDS4995", "description": "control (normal periphery of resected tumor)", "sample_id": [ "GSM1003058", "GSM1003067", "GSM1003059", "GSM1003060", "GSM1003061", "GSM1003062", "GSM1003063", "GSM1003064", "GSM1003065", "GSM1003066" ], "type": "disease state", "id": "GDS4995_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS4995", "version": 1.0, "instances": "21", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4995.tab", "compression": "gz" } ], [ [ "GDS4996.tab" ], { "title": "Kidney epithelium cell line response to adaptive mutations in Influenza A virus (H3N2) non-structural 1 gene", "description": "Analysis of M1 cells following infection with H3N2 human influenza isolate A/Hong Kong/1/1968 (HK-wt) or mouse-adapted (MA), recombinant HK NS1 mutants. NS1 protein is a multifunctional virulence factor. Results provide insight into the molecular effects of MA NS1 mutations on host gene expression.", "type": "Expression profiling by array", "pubmed_id": "24391972", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "42", "value_type": "transformed count", "reference_series": "GSE48217", "order": "none", "update_date": "Apr 26 2016", "subsets": [ { "dataset_id": "GDS4996", "description": "mock", "sample_id": [ "GSM1172653", "GSM1172654", "GSM1172655" ], "type": "infection", "id": "GDS4996_1" }, { "dataset_id": "GDS4996", "description": "HK-wt", "sample_id": [ "GSM1172656", "GSM1172657", "GSM1172658" ], "type": "infection", "id": "GDS4996_2" }, { "dataset_id": "GDS4996", "description": "D125G", "sample_id": [ "GSM1173022", "GSM1173023", "GSM1173024" ], "type": "infection", "id": "GDS4996_3" }, { "dataset_id": "GDS4996", "description": "D2N", "sample_id": [ "GSM1173007", "GSM1173008", "GSM1173009" ], "type": "infection", "id": "GDS4996_4" }, { "dataset_id": "GDS4996", "description": "F103L", "sample_id": [ "GSM1172659", "GSM1172660", "GSM1172661" ], "type": "infection", "id": "GDS4996_5" }, { "dataset_id": "GDS4996", "description": "L98S", "sample_id": [ "GSM1173013", "GSM1173014", "GSM1173015" ], "type": "infection", "id": "GDS4996_6" }, { "dataset_id": "GDS4996", "description": "L98S/M106I", "sample_id": [ "GSM1173016", "GSM1173017", "GSM1173018" ], "type": "infection", "id": "GDS4996_7" }, { "dataset_id": "GDS4996", "description": "M106I", "sample_id": [ "GSM1172665", "GSM1172666", "GSM1172667" ], "type": "infection", "id": "GDS4996_8" }, { "dataset_id": "GDS4996", "description": "M106V", "sample_id": [ "GSM1172662", "GSM1172663", "GSM1172664" ], "type": "infection", "id": "GDS4996_9" }, { "dataset_id": "GDS4996", "description": "M106V/M124I", "sample_id": [ "GSM1173019", "GSM1173020", "GSM1173021" ], "type": "infection", "id": "GDS4996_10" }, { "dataset_id": "GDS4996", "description": "R227K", "sample_id": [ "GSM1173031", "GSM1173032", "GSM1173033" ], "type": "infection", "id": "GDS4996_11" }, { "dataset_id": "GDS4996", "description": "V180A", "sample_id": [ "GSM1173025", "GSM1173026", "GSM1173027" ], "type": "infection", "id": "GDS4996_12" }, { "dataset_id": "GDS4996", "description": "V226I", "sample_id": [ "GSM1173028", "GSM1173029", "GSM1173030" ], "type": "infection", "id": "GDS4996_13" }, { "dataset_id": "GDS4996", "description": "V23A", "sample_id": [ "GSM1173010", "GSM1173011", "GSM1173012" ], "type": "infection", "id": "GDS4996_14" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4996", "version": 1.0, "instances": "42", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4996.tab", "compression": "gz" } ], [ [ "GDS4997.tab" ], { "title": "Lung epithelium cell line response to Influenza A virus (H3N2) non-structural 1 gene mutations", "description": "Analysis of A549 cells infected with H3N2 influenza isolate A/Hong Kong/1/1968 (HK-wt) or recombinant HK NS1 mutants. NS1 is a multifunctional virulence factor. These results, together with those from GDS4998, provide insight into molecular effects of NS1 mutation on human versus mouse host cells.", "type": "Expression profiling by array", "pubmed_id": "23886034", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE48200", "order": "none", "update_date": "Apr 26 2016", "subsets": [ { "dataset_id": "GDS4997", "description": "mock", "sample_id": [ "GSM1172635", "GSM1172636", "GSM1172637" ], "type": "infection", "id": "GDS4997_1" }, { "dataset_id": "GDS4997", "description": "HK-wt", "sample_id": [ "GSM1172638", "GSM1172639", "GSM1172640" ], "type": "infection", "id": "GDS4997_2" }, { "dataset_id": "GDS4997", "description": "F103L", "sample_id": [ "GSM1172641", "GSM1172642", "GSM1172643" ], "type": "infection", "id": "GDS4997_3" }, { "dataset_id": "GDS4997", "description": "M106I", "sample_id": [ "GSM1172644", "GSM1172645", "GSM1172646" ], "type": "infection", "id": "GDS4997_4" }, { "dataset_id": "GDS4997", "description": "M106V", "sample_id": [ "GSM1172647", "GSM1172648", "GSM1172649" ], "type": "infection", "id": "GDS4997_5" }, { "dataset_id": "GDS4997", "description": "F103L+M106I", "sample_id": [ "GSM1172650", "GSM1172651", "GSM1172652" ], "type": "infection", "id": "GDS4997_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS4997", "version": 1.0, "instances": "18", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4997.tab", "compression": "gz" } ], [ [ "GDS4998.tab" ], { "title": "Kidney epithelium cell line response to Influenza A virus (H3N2) non-structural 1 gene mutations", "description": "Analysis of M1 cells infected with H3N2 influenza isolate A/Hong Kong/1/1968 (HK-wt) or recombinant HK NS1 mutants. NS1 is a multifunctional virulence factor. These results, together with those from GDS4997, provide insight into molecular effects of NS1 mutation on mouse versus human host cells.", "type": "Expression profiling by array", "pubmed_id": "23886034", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE48200", "order": "none", "update_date": "Apr 26 2016", "subsets": [ { "dataset_id": "GDS4998", "description": "mock", "sample_id": [ "GSM1172653", "GSM1172654", "GSM1172655" ], "type": "infection", "id": "GDS4998_1" }, { "dataset_id": "GDS4998", "description": "HK-wt", "sample_id": [ "GSM1172656", "GSM1172657", "GSM1172658" ], "type": "infection", "id": "GDS4998_2" }, { "dataset_id": "GDS4998", "description": "F103L", "sample_id": [ "GSM1172659", "GSM1172660", "GSM1172661" ], "type": "infection", "id": "GDS4998_3" }, { "dataset_id": "GDS4998", "description": "M106V", "sample_id": [ "GSM1172662", "GSM1172663", "GSM1172664" ], "type": "infection", "id": "GDS4998_4" }, { "dataset_id": "GDS4998", "description": "M106I", "sample_id": [ "GSM1172665", "GSM1172666", "GSM1172667" ], "type": "infection", "id": "GDS4998_5" }, { "dataset_id": "GDS4998", "description": "F103L+M106I", "sample_id": [ "GSM1172668", "GSM1172669", "GSM1172670" ], "type": "infection", "id": "GDS4998_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4998", "version": 1.0, "instances": "18", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4998.tab", "compression": "gz" } ], [ [ "GDS4999.tab" ], { "title": "Very low density lipoprotein receptor knockout effect in house dust mite model of asthma: lung", "description": "Analysis of lung from B6129SF2/J animals depleted for very low density lipoprotein receptor (VLDLR) and subjected to intranasal challenge with house dust mite (HDM). VLDLR is a multiligand apolipoprotein E receptor. Results provide insight into the role of VLDLR in HDM-induced airway inflammation.", "type": "Expression profiling by array", "pubmed_id": "24733846", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE55247", "order": "none", "update_date": "Apr 27 2016", "subsets": [ { "dataset_id": "GDS4999", "description": "wild type", "sample_id": [ "GSM1332395", "GSM1332396", "GSM1332397", "GSM1332398", "GSM1332383", "GSM1332384", "GSM1332385", "GSM1332386" ], "type": "genotype/variation", "id": "GDS4999_1" }, { "dataset_id": "GDS4999", "description": "Vldlr-/- knockout", "sample_id": [ "GSM1332391", "GSM1332392", "GSM1332393", "GSM1332394", "GSM1332387", "GSM1332388", "GSM1332389", "GSM1332390" ], "type": "genotype/variation", "id": "GDS4999_2" }, { "dataset_id": "GDS4999", "description": "control", "sample_id": [ "GSM1332387", "GSM1332388", "GSM1332389", "GSM1332390", "GSM1332383", "GSM1332384", "GSM1332385", "GSM1332386" ], "type": "stress", "id": "GDS4999_3" }, { "dataset_id": "GDS4999", "description": "house dust mite", "sample_id": [ "GSM1332391", "GSM1332392", "GSM1332393", "GSM1332394", "GSM1332395", "GSM1332396", "GSM1332397", "GSM1332398" ], "type": "stress", "id": "GDS4999_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS4999", "version": 1.0, "instances": "16", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS4999.tab", "compression": "gz" } ], [ [ "GDS5.tab" ], { "title": "Diurnal and circadian-regulated genes (I)", "description": "Analysis of plant molecular response to day/night cycling. Samples taken at 6 hour intervals throughout the day. Identification of genes that cycle with either a diurnal or a circadian pattern.", "type": "Expression profiling by array", "pubmed_id": "11158533", "platform": "GPL13", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "12800", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE4", "order": "ordered", "update_date": "Apr 03 2003", "subsets": [ { "dataset_id": "GDS5", "description": "6 hour", "sample_id": [ "GSM424" ], "type": "time", "id": "GDS5_1" }, { "dataset_id": "GDS5", "description": "12 hour", "sample_id": [ "GSM425", "GSM426", "GSM431" ], "type": "time", "id": "GDS5_2" }, { "dataset_id": "GDS5", "description": "24 hour", "sample_id": [ "GSM432" ], "type": "time", "id": "GDS5_3" } ], "taxid": "3702", "genes": 7779, "aggregation_function": "mean", "name": "GDS5", "version": 1.0, "instances": "5", "variables": 7781, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5.tab", "compression": "gz" } ], [ [ "GDS50.tab" ], { "title": "Congenital heart disease (Mu11K-B)", "description": "Use of E9.5 Csx/Nkx2.5 mutant embryos to identify downstream target genes and affected pathways of Nkx2.5 which has a function in cardiac differentiation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE78", "order": "none", "update_date": "Apr 08 2003", "subsets": [ { "dataset_id": "GDS50", "description": "wildtype", "sample_id": [ "GSM2281", "GSM2282", "GSM2283" ], "type": "strain", "id": "GDS50_1" }, { "dataset_id": "GDS50", "description": "Csx/Nkx2.5 heterozygous", "sample_id": [ "GSM2278", "GSM2279", "GSM2280" ], "type": "strain", "id": "GDS50_2" }, { "dataset_id": "GDS50", "description": "Csx/Nkx2.5 homozygous", "sample_id": [ "GSM2275", "GSM2276", "GSM2277" ], "type": "strain", "id": "GDS50_3" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS50", "version": 1.0, "instances": "9", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS50.tab", "compression": "gz" } ], [ [ "GDS5000.tab" ], { "title": "Mechanistic Indicators of Asthma (MICA) cohort: peripheral blood", "description": "Analysis of peripheral blood from asthmatic and non-asthmatic children (ages 9 to 13), participants of the MICA study conducted by the EPA from 11/2006 to 01/2007 in Detroit, MI. These results, together with clinical biomarker measurements, may help to differentiate asthmatics from non-asthmatics.", "type": "Expression profiling by array", "pubmed_id": [ "24188919", "25643280" ], "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "131", "value_type": "transformed count", "reference_series": "GSE35571", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5000", "description": "asthmatic", "sample_id": [ "GSM870905", "GSM870906", "GSM870910", "GSM870913", "GSM870914", "GSM870923", "GSM870924", "GSM870927", "GSM870940", "GSM870941", "GSM870982", "GSM870984", "GSM870988", "GSM870989", "GSM870993", "GSM871004", "GSM871005", "GSM871008", "GSM871010", "GSM871019", "GSM871031", "GSM870903", "GSM870904", "GSM870907", "GSM870911", "GSM870915", "GSM870917", "GSM870918", "GSM870919", "GSM870921", "GSM870922", "GSM870926", "GSM870930", "GSM870932", "GSM870934", "GSM870936", "GSM870937", "GSM870945", "GSM870948", "GSM870951", "GSM870954", "GSM870958", "GSM870959", "GSM870963", "GSM870969", "GSM870973", "GSM870976", "GSM870977", "GSM870987", "GSM870998", "GSM870999", "GSM871001", "GSM871002", "GSM871009", "GSM871011", "GSM871012", "GSM871023", "GSM871024", "GSM871029", "GSM871030" ], "type": "disease state", "id": "GDS5000_1" }, { "dataset_id": "GDS5000", "description": "non-asthmatic", "sample_id": [ "GSM870902", "GSM870909", "GSM870920", "GSM870925", "GSM870928", "GSM870931", "GSM870933", "GSM870938", "GSM870950", "GSM870952", "GSM870953", "GSM870956", "GSM870965", "GSM870974", "GSM870978", "GSM870979", "GSM870980", "GSM870992", "GSM870996", "GSM870997", "GSM871000", "GSM871003", "GSM871007", "GSM871015", "GSM871017", "GSM871020", "GSM871022", "GSM870908", "GSM870916", "GSM870935", "GSM870939", "GSM870942", "GSM870943", "GSM870944", "GSM870946", "GSM870947", "GSM870949", "GSM870955", "GSM870957", "GSM870960", "GSM870961", "GSM870964", "GSM870967", "GSM870968", "GSM870970", "GSM870972", "GSM870975", "GSM870981", "GSM870983", "GSM870985", "GSM870986", "GSM870990", "GSM870991", "GSM870994", "GSM870995", "GSM871006", "GSM871013", "GSM871014", "GSM871016", "GSM871021", "GSM871025", "GSM871026", "GSM871027", "GSM871032" ], "type": "disease state", "id": "GDS5000_2" }, { "dataset_id": "GDS5000", "description": "n/a", "sample_id": [ "GSM870929", "GSM870962", "GSM870971", "GSM871018", "GSM871028", "GSM870912", "GSM870966" ], "type": "disease state", "id": "GDS5000_3" }, { "dataset_id": "GDS5000", "description": "female", "sample_id": [ "GSM870902", "GSM870905", "GSM870906", "GSM870909", "GSM870910", "GSM870913", "GSM870914", "GSM870920", "GSM870923", "GSM870924", "GSM870925", "GSM870927", "GSM870928", "GSM870929", "GSM870931", "GSM870933", "GSM870938", "GSM870940", "GSM870941", "GSM870950", "GSM870952", "GSM870953", "GSM870956", "GSM870962", "GSM870965", "GSM870971", "GSM870974", "GSM870978", "GSM870979", "GSM870980", "GSM870982", "GSM870984", "GSM870988", "GSM870989", "GSM870992", "GSM870993", "GSM870996", "GSM870997", "GSM871000", "GSM871003", "GSM871004", "GSM871005", "GSM871007", "GSM871008", "GSM871010", "GSM871015", "GSM871017", "GSM871018", "GSM871019", "GSM871020", "GSM871022", "GSM871028", "GSM871031" ], "type": "gender", "id": "GDS5000_4" }, { "dataset_id": "GDS5000", "description": "male", "sample_id": [ "GSM870903", "GSM870904", "GSM870907", "GSM870908", "GSM870911", "GSM870912", "GSM870915", "GSM870916", "GSM870917", "GSM870918", "GSM870919", "GSM870921", "GSM870922", "GSM870926", "GSM870930", "GSM870932", "GSM870934", "GSM870935", "GSM870936", "GSM870937", "GSM870939", "GSM870942", "GSM870943", "GSM870944", "GSM870945", "GSM870946", "GSM870947", "GSM870948", "GSM870949", "GSM870951", "GSM870954", "GSM870955", "GSM870957", "GSM870958", "GSM870959", "GSM870960", "GSM870961", "GSM870963", "GSM870964", "GSM870966", "GSM870967", "GSM870968", "GSM870969", "GSM870970", "GSM870972", "GSM870973", "GSM870975", "GSM870976", "GSM870977", "GSM870981", "GSM870983", "GSM870985", "GSM870986", "GSM870987", "GSM870990", "GSM870991", "GSM870994", "GSM870995", "GSM870998", "GSM870999", "GSM871001", "GSM871002", "GSM871006", "GSM871009", "GSM871011", "GSM871012", "GSM871013", "GSM871014", "GSM871016", "GSM871021", "GSM871023", "GSM871024", "GSM871025", "GSM871026", "GSM871027", "GSM871029", "GSM871030", "GSM871032" ], "type": "gender", "id": "GDS5000_5" }, { "dataset_id": "GDS5000", "description": "9 years old", "sample_id": [ "GSM870926", "GSM870950", "GSM870971", "GSM870943", "GSM870982", "GSM870956", "GSM871024", "GSM871029", "GSM870962", "GSM870931", "GSM871000", "GSM871020", "GSM870954" ], "type": "age", "id": "GDS5000_6" }, { "dataset_id": "GDS5000", "description": "10 years old", "sample_id": [ "GSM871031", "GSM870968", "GSM870972", "GSM870924", "GSM871018", "GSM870925", "GSM870903", "GSM870966", "GSM870941", "GSM870902", "GSM870917", "GSM870932", "GSM870965", "GSM871032", "GSM871019", "GSM870998", "GSM870920", "GSM870939", "GSM870996", "GSM870915", "GSM870936", "GSM870957", "GSM870974", "GSM870976", "GSM870935", "GSM871014", "GSM871007", "GSM870937", "GSM871027", "GSM870958" ], "type": "age", "id": "GDS5000_7" }, { "dataset_id": "GDS5000", "description": "11 years old", "sample_id": [ "GSM870979", "GSM870992", "GSM871017", "GSM871002", "GSM870967", "GSM870989", "GSM870963", "GSM870985", "GSM870994", "GSM870906", "GSM870909", "GSM871001", "GSM871011", "GSM870995", "GSM871021", "GSM871022", "GSM870923", "GSM870930", "GSM870987", "GSM870961", "GSM870940", "GSM870980", "GSM870904", "GSM870999", "GSM870964", "GSM870905", "GSM870919", "GSM870942" ], "type": "age", "id": "GDS5000_8" }, { "dataset_id": "GDS5000", "description": "12 years old", "sample_id": [ "GSM870988", "GSM870934", "GSM870951", "GSM870914", "GSM870928", "GSM870945", "GSM870955", "GSM870960", "GSM870953", "GSM870969", "GSM870946", "GSM870910", "GSM870986", "GSM870933", "GSM870938", "GSM870997", "GSM871004", "GSM871003", "GSM870947", "GSM871025", "GSM871026", "GSM870978", "GSM870913", "GSM871005", "GSM871008", "GSM870908", "GSM870983", "GSM870991", "GSM871013", "GSM871028", "GSM870911", "GSM870922" ], "type": "age", "id": "GDS5000_9" }, { "dataset_id": "GDS5000", "description": "13 years old", "sample_id": [ "GSM870949", "GSM871016", "GSM871010", "GSM870929", "GSM870918", "GSM870921", "GSM870952", "GSM870907", "GSM871009", "GSM870984", "GSM871015", "GSM870948", "GSM870977", "GSM870916", "GSM870944", "GSM871006", "GSM870927", "GSM870993", "GSM870959", "GSM870912", "GSM870970", "GSM870975", "GSM870981", "GSM870990", "GSM870973", "GSM871012", "GSM871023", "GSM871030" ], "type": "age", "id": "GDS5000_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5000", "version": 1.0, "instances": "131", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5000.tab", "compression": "gz" } ], [ [ "GDS5001.tab" ], { "title": "Allergen inhalation challenge effect on peripheral blood of asthmatic early responders and dual responders", "description": "Analysis of blood collected from asthmatics immediately prior to, and two hours after, cat allergen challenge. Some asthmatics are early responders while others are dual (early plus late) responders. Results provide insight into the molecular mechanisms underlying early and dual asthmatic responses.", "type": "Expression profiling by array", "pubmed_id": "23844124", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "transformed count", "reference_series": "GSE40240", "order": "none", "update_date": "May 17 2016", "subsets": [ { "dataset_id": "GDS5001", "description": "LST003", "sample_id": [ "GSM989153", "GSM989167" ], "type": "individual", "id": "GDS5001_1" }, { "dataset_id": "GDS5001", "description": "LST012", "sample_id": [ "GSM989157", "GSM989171" ], "type": "individual", "id": "GDS5001_2" }, { "dataset_id": "GDS5001", "description": "LST013", "sample_id": [ "GSM989161", "GSM989175" ], "type": "individual", "id": "GDS5001_3" }, { "dataset_id": "GDS5001", "description": "LST014", "sample_id": [ "GSM989154", "GSM989168" ], "type": "individual", "id": "GDS5001_4" }, { "dataset_id": "GDS5001", "description": "LST016", "sample_id": [ "GSM989155", "GSM989169" ], "type": "individual", "id": "GDS5001_5" }, { "dataset_id": "GDS5001", "description": "LST017", "sample_id": [ "GSM989162", "GSM989176" ], "type": "individual", "id": "GDS5001_6" }, { "dataset_id": "GDS5001", "description": "LST018", "sample_id": [ "GSM989163", "GSM989177" ], "type": "individual", "id": "GDS5001_7" }, { "dataset_id": "GDS5001", "description": "LST019", "sample_id": [ "GSM989156", "GSM989170" ], "type": "individual", "id": "GDS5001_8" }, { "dataset_id": "GDS5001", "description": "LST020", "sample_id": [ "GSM989164", "GSM989178" ], "type": "individual", "id": "GDS5001_9" }, { "dataset_id": "GDS5001", "description": "LST021", "sample_id": [ "GSM989158", "GSM989172" ], "type": "individual", "id": "GDS5001_10" }, { "dataset_id": "GDS5001", "description": "LST022", "sample_id": [ "GSM989165", "GSM989179" ], "type": "individual", "id": "GDS5001_11" }, { "dataset_id": "GDS5001", "description": "LST026", "sample_id": [ "GSM989159", "GSM989173" ], "type": "individual", "id": "GDS5001_12" }, { "dataset_id": "GDS5001", "description": "STS007", "sample_id": [ "GSM989160", "GSM989174" ], "type": "individual", "id": "GDS5001_13" }, { "dataset_id": "GDS5001", "description": "STS009", "sample_id": [ "GSM989166", "GSM989180" ], "type": "individual", "id": "GDS5001_14" }, { "dataset_id": "GDS5001", "description": "female", "sample_id": [ "GSM989153", "GSM989154", "GSM989156", "GSM989157", "GSM989159", "GSM989161", "GSM989162", "GSM989163", "GSM989165", "GSM989166", "GSM989167", "GSM989168", "GSM989170", "GSM989171", "GSM989173", "GSM989175", "GSM989176", "GSM989177", "GSM989179", "GSM989180" ], "type": "gender", "id": "GDS5001_15" }, { "dataset_id": "GDS5001", "description": "male", "sample_id": [ "GSM989155", "GSM989158", "GSM989160", "GSM989164", "GSM989169", "GSM989172", "GSM989174", "GSM989178" ], "type": "gender", "id": "GDS5001_16" }, { "dataset_id": "GDS5001", "description": "23 years old", "sample_id": [ "GSM989161", "GSM989175" ], "type": "age", "id": "GDS5001_17" }, { "dataset_id": "GDS5001", "description": "26 years old", "sample_id": [ "GSM989162", "GSM989164", "GSM989176", "GSM989178" ], "type": "age", "id": "GDS5001_18" }, { "dataset_id": "GDS5001", "description": "27 years old", "sample_id": [ "GSM989155", "GSM989165", "GSM989169", "GSM989179" ], "type": "age", "id": "GDS5001_19" }, { "dataset_id": "GDS5001", "description": "28 years old", "sample_id": [ "GSM989153", "GSM989159", "GSM989167", "GSM989173" ], "type": "age", "id": "GDS5001_20" }, { "dataset_id": "GDS5001", "description": "29 years old", "sample_id": [ "GSM989157", "GSM989171" ], "type": "age", "id": "GDS5001_21" }, { "dataset_id": "GDS5001", "description": "31 years old", "sample_id": [ "GSM989158", "GSM989172" ], "type": "age", "id": "GDS5001_22" }, { "dataset_id": "GDS5001", "description": "34 years old", "sample_id": [ "GSM989154", "GSM989168" ], "type": "age", "id": "GDS5001_23" }, { "dataset_id": "GDS5001", "description": "42 years old", "sample_id": [ "GSM989156", "GSM989160", "GSM989170", "GSM989174" ], "type": "age", "id": "GDS5001_24" }, { "dataset_id": "GDS5001", "description": "49 years old", "sample_id": [ "GSM989163", "GSM989177" ], "type": "age", "id": "GDS5001_25" }, { "dataset_id": "GDS5001", "description": "52 years old", "sample_id": [ "GSM989166", "GSM989180" ], "type": "age", "id": "GDS5001_26" }, { "dataset_id": "GDS5001", "description": "control", "sample_id": [ "GSM989153", "GSM989159", "GSM989154", "GSM989165", "GSM989155", "GSM989156", "GSM989160", "GSM989157", "GSM989158", "GSM989161", "GSM989162", "GSM989164", "GSM989163", "GSM989166" ], "type": "protocol", "id": "GDS5001_27" }, { "dataset_id": "GDS5001", "description": "allergen challenge", "sample_id": [ "GSM989167", "GSM989173", "GSM989168", "GSM989179", "GSM989169", "GSM989170", "GSM989174", "GSM989171", "GSM989172", "GSM989175", "GSM989176", "GSM989178", "GSM989177", "GSM989180" ], "type": "protocol", "id": "GDS5001_28" }, { "dataset_id": "GDS5001", "description": "early responder", "sample_id": [ "GSM989153", "GSM989154", "GSM989155", "GSM989156", "GSM989157", "GSM989158", "GSM989159", "GSM989160", "GSM989167", "GSM989168", "GSM989169", "GSM989170", "GSM989171", "GSM989172", "GSM989173", "GSM989174" ], "type": "other", "id": "GDS5001_29" }, { "dataset_id": "GDS5001", "description": "dual responder", "sample_id": [ "GSM989161", "GSM989162", "GSM989163", "GSM989164", "GSM989165", "GSM989166", "GSM989175", "GSM989176", "GSM989177", "GSM989178", "GSM989179", "GSM989180" ], "type": "other", "id": "GDS5001_30" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5001", "version": 1.0, "instances": "28", "variables": 26809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5001.tab", "compression": "gz" } ], [ [ "GDS5002.tab" ], { "title": "Ataxin-1-like knock out effect on hematopoietic stem cells", "description": "Analysis of hematopoietic stem cells (HSCs) purified from the bone marrow of Ataxin-1-like (Atxn1L) null C57Bl/6 mice at 8 weeks of age. The ataxia-associated Atxn1L gene is highly expressed in HSCs. Results provide insight into the role of Atxn-1L in HSC function.", "type": "Expression profiling by array", "pubmed_id": "23555280", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE44285", "order": "none", "update_date": "Oct 09 2014", "subsets": [ { "dataset_id": "GDS5002", "description": "Atxn1L-null", "sample_id": [ "GSM1082324", "GSM1082325" ], "type": "genotype/variation", "id": "GDS5002_1" }, { "dataset_id": "GDS5002", "description": "wildtype", "sample_id": [ "GSM1082321", "GSM1082322", "GSM1082323" ], "type": "genotype/variation", "id": "GDS5002_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5002", "version": 1.0, "instances": "5", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5002.tab", "compression": "gz" } ], [ [ "GDS5003.tab" ], { "title": "Mammalian heart development: time course", "description": "Analysis of heart from CD1 animals at defined stages of cardiogenesis from early embryonic to adult stages. ESC stem cell line R1 was included as the starting point for development. Results provide insight into the temporal and spatial molecular mechanisms underlying mammalian heart development.", "type": "Expression profiling by array", "pubmed_id": "24803680", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "transformed count", "reference_series": "GSE51483", "order": "none", "update_date": "May 17 2016", "subsets": [ { "dataset_id": "GDS5003", "description": "embryonic stem cells", "sample_id": [ "GSM1246305", "GSM1246306", "GSM1246307" ], "type": "development stage", "id": "GDS5003_1" }, { "dataset_id": "GDS5003", "description": "embryonic day 7.5", "sample_id": [ "GSM1246308", "GSM1246309", "GSM1246310" ], "type": "development stage", "id": "GDS5003_2" }, { "dataset_id": "GDS5003", "description": "embryonic day 8.5", "sample_id": [ "GSM1246311", "GSM1246312", "GSM1246313" ], "type": "development stage", "id": "GDS5003_3" }, { "dataset_id": "GDS5003", "description": "embryonic day 9.5", "sample_id": [ "GSM1246314", "GSM1246315", "GSM1246316", "GSM1246317", "GSM1246318", "GSM1246319" ], "type": "development stage", "id": "GDS5003_4" }, { "dataset_id": "GDS5003", "description": "embryonic day 12.5", "sample_id": [ "GSM1246320", "GSM1246321", "GSM1246322", "GSM1246323", "GSM1246324", "GSM1246325" ], "type": "development stage", "id": "GDS5003_5" }, { "dataset_id": "GDS5003", "description": "embryonic day 14.5", "sample_id": [ "GSM1246326", "GSM1246327", "GSM1246328", "GSM1246329", "GSM1246330", "GSM1246331" ], "type": "development stage", "id": "GDS5003_6" }, { "dataset_id": "GDS5003", "description": "embryonic day 18.5", "sample_id": [ "GSM1246332", "GSM1246333", "GSM1246334", "GSM1246335", "GSM1246336", "GSM1246337" ], "type": "development stage", "id": "GDS5003_7" }, { "dataset_id": "GDS5003", "description": "postnatal day 3", "sample_id": [ "GSM1246338", "GSM1246339", "GSM1246340", "GSM1246341", "GSM1246342", "GSM1246343" ], "type": "development stage", "id": "GDS5003_8" }, { "dataset_id": "GDS5003", "description": "adult", "sample_id": [ "GSM1246344", "GSM1246345", "GSM1246346", "GSM1246347", "GSM1246348", "GSM1246349" ], "type": "development stage", "id": "GDS5003_9" }, { "dataset_id": "GDS5003", "description": "embryonic stem cell line R1", "sample_id": [ "GSM1246305", "GSM1246306", "GSM1246307" ], "type": "tissue", "id": "GDS5003_10" }, { "dataset_id": "GDS5003", "description": "whole embryo", "sample_id": [ "GSM1246308", "GSM1246309", "GSM1246310" ], "type": "tissue", "id": "GDS5003_11" }, { "dataset_id": "GDS5003", "description": "whole heart tube", "sample_id": [ "GSM1246311", "GSM1246312", "GSM1246313" ], "type": "tissue", "id": "GDS5003_12" }, { "dataset_id": "GDS5003", "description": "left ventricle", "sample_id": [ "GSM1246344", "GSM1246345", "GSM1246346", "GSM1246338", "GSM1246339", "GSM1246340", "GSM1246320", "GSM1246321", "GSM1246322", "GSM1246326", "GSM1246327", "GSM1246328", "GSM1246332", "GSM1246333", "GSM1246334", "GSM1246314", "GSM1246315", "GSM1246316" ], "type": "tissue", "id": "GDS5003_13" }, { "dataset_id": "GDS5003", "description": "right ventricle", "sample_id": [ "GSM1246347", "GSM1246348", "GSM1246349", "GSM1246341", "GSM1246342", "GSM1246343", "GSM1246323", "GSM1246324", "GSM1246325", "GSM1246329", "GSM1246330", "GSM1246331", "GSM1246335", "GSM1246336", "GSM1246337", "GSM1246317", "GSM1246318", "GSM1246319" ], "type": "tissue", "id": "GDS5003_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5003", "version": 1.0, "instances": "45", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5003.tab", "compression": "gz" } ], [ [ "GDS5004.tab" ], { "title": "Adult alveolar type 2 and embryonic bipotent progenitor lung cells", "description": "Analysis of adult alveolar type (AT) 2 and E18 bipotent progenitor (BP) lung cells. During development, AT1 and AT2 cells arise from a BP; after birth, new AT1 cells derive from rare, long-lived, self-renewing mature AT2 cells. Results provide insight into the molecular basis of AT2 self-renewal.", "type": "Expression profiling by array", "pubmed_id": "24499815", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE49346", "order": "none", "update_date": "Oct 09 2014", "subsets": [ { "dataset_id": "GDS5004", "description": "bipotent progenitor (Muc1+ Pdpn+)", "sample_id": [ "GSM1197696", "GSM1197697", "GSM1197698" ], "type": "cell type", "id": "GDS5004_1" }, { "dataset_id": "GDS5004", "description": "alveolar type 2 (Lyz2+ EpCAM+)", "sample_id": [ "GSM1197699", "GSM1197700", "GSM1197701" ], "type": "cell type", "id": "GDS5004_2" }, { "dataset_id": "GDS5004", "description": "embryo day 18", "sample_id": [ "GSM1197696", "GSM1197697", "GSM1197698" ], "type": "age", "id": "GDS5004_3" }, { "dataset_id": "GDS5004", "description": "adult", "sample_id": [ "GSM1197699", "GSM1197700", "GSM1197701" ], "type": "age", "id": "GDS5004_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5004", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5004.tab", "compression": "gz" } ], [ [ "GDS5005.tab" ], { "title": "Running effect on hippocampal subgranular zone: time course", "description": "Analysis of LCM samples of the subgranular zone (SGZ) of the hippocampal dentate gyrus isolated from adults subjected to running for up to 30 days. The SGZ is a major site of neurogenesis in adult brain. Running enhances SGZ proliferation. Results provide insight into the SGZ molecular environment.", "type": "Expression profiling by array", "pubmed_id": "24154525", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE39697", "order": "none", "update_date": "May 17 2016", "subsets": [ { "dataset_id": "GDS5005", "description": "A01", "sample_id": [ "GSM977862", "GSM977863" ], "type": "individual", "id": "GDS5005_1" }, { "dataset_id": "GDS5005", "description": "A02", "sample_id": [ "GSM977864", "GSM977865" ], "type": "individual", "id": "GDS5005_2" }, { "dataset_id": "GDS5005", "description": "A03", "sample_id": [ "GSM977866", "GSM977867" ], "type": "individual", "id": "GDS5005_3" }, { "dataset_id": "GDS5005", "description": "A41", "sample_id": [ "GSM977868", "GSM977869" ], "type": "individual", "id": "GDS5005_4" }, { "dataset_id": "GDS5005", "description": "A42", "sample_id": [ "GSM977870", "GSM977871" ], "type": "individual", "id": "GDS5005_5" }, { "dataset_id": "GDS5005", "description": "A43", "sample_id": [ "GSM977872", "GSM977873" ], "type": "individual", "id": "GDS5005_6" }, { "dataset_id": "GDS5005", "description": "AT1", "sample_id": [ "GSM977874", "GSM977875" ], "type": "individual", "id": "GDS5005_7" }, { "dataset_id": "GDS5005", "description": "AT2", "sample_id": [ "GSM977876", "GSM977877" ], "type": "individual", "id": "GDS5005_8" }, { "dataset_id": "GDS5005", "description": "AT3", "sample_id": [ "GSM977878", "GSM977879" ], "type": "individual", "id": "GDS5005_9" }, { "dataset_id": "GDS5005", "description": "control", "sample_id": [ "GSM977867", "GSM977866", "GSM977865", "GSM977864", "GSM977863", "GSM977862" ], "type": "protocol", "id": "GDS5005_10" }, { "dataset_id": "GDS5005", "description": "running", "sample_id": [ "GSM977873", "GSM977872", "GSM977871", "GSM977870", "GSM977869", "GSM977868", "GSM977879", "GSM977878", "GSM977877", "GSM977876", "GSM977875", "GSM977874" ], "type": "protocol", "id": "GDS5005_11" }, { "dataset_id": "GDS5005", "description": "0 days", "sample_id": [ "GSM977867", "GSM977866", "GSM977865", "GSM977864", "GSM977863", "GSM977862" ], "type": "time", "id": "GDS5005_12" }, { "dataset_id": "GDS5005", "description": "4 days", "sample_id": [ "GSM977873", "GSM977872", "GSM977871", "GSM977870", "GSM977869", "GSM977868" ], "type": "time", "id": "GDS5005_13" }, { "dataset_id": "GDS5005", "description": "30 days", "sample_id": [ "GSM977879", "GSM977878", "GSM977877", "GSM977876", "GSM977875", "GSM977874" ], "type": "time", "id": "GDS5005_14" }, { "dataset_id": "GDS5005", "description": "subgranular zone of dentate gyrus", "sample_id": [ "GSM977862", "GSM977864", "GSM977866", "GSM977874", "GSM977876", "GSM977878", "GSM977868", "GSM977870", "GSM977872" ], "type": "cell type", "id": "GDS5005_15" }, { "dataset_id": "GDS5005", "description": "granule cell layer of dentate gyrus", "sample_id": [ "GSM977863", "GSM977865", "GSM977867", "GSM977875", "GSM977877", "GSM977879", "GSM977869", "GSM977871", "GSM977873" ], "type": "cell type", "id": "GDS5005_16" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS5005", "version": 1.0, "instances": "18", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5005.tab", "compression": "gz" } ], [ [ "GDS5006.tab" ], { "title": "Dietary probiotic Lactobacillus effect on N2 wildtype strain: adult developmental stage", "description": "Analysis of adult worms fed live lactic acid bacteria (LAB) Lactobacillus rhamnosus CNCM I-3690 or CNCM I-4317 for 10 days. L. rhamnosus CNCM I-3690 protects against oxidative stress and increases lifespan in worms. Results provide insight into probiotic LAB-induced oxidative stress protection.", "type": "Expression profiling by array", "pubmed_id": "23300685", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE42192", "order": "none", "update_date": "Jun 18 2014", "subsets": [ { "dataset_id": "GDS5006", "description": "E. coli control", "sample_id": [ "GSM1034601", "GSM1034602", "GSM1034603" ], "type": "protocol", "id": "GDS5006_1" }, { "dataset_id": "GDS5006", "description": "L. rhamnosus CNCM I-3690", "sample_id": [ "GSM1034604", "GSM1034605", "GSM1034606" ], "type": "protocol", "id": "GDS5006_2" }, { "dataset_id": "GDS5006", "description": "L. rhamnosus CNCM I-4317", "sample_id": [ "GSM1034607", "GSM1034608", "GSM1034609" ], "type": "protocol", "id": "GDS5006_3" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS5006", "version": 1.0, "instances": "9", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5006.tab", "compression": "gz" } ], [ [ "GDS5007.tab" ], { "title": "Fetal and neonatal ductus arteriosus and aorta: endothelial cells", "description": "Analysis of endothelial cells (ECs) isolated from the ductus arteriosus (DA) and aorta of fetuses and neonates. The DA, a fetal shunt artery between the pulmonary artery and the aorta, closes immediately after birth. Results provide insight into EC involvement in DA-specific morphology and function.", "type": "Expression profiling by array", "pubmed_id": "24086288", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE40500", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS5007", "description": "fetus (full term)", "sample_id": [ "GSM995338", "GSM995339", "GSM995340", "GSM995341", "GSM995342", "GSM995343" ], "type": "development stage", "id": "GDS5007_1" }, { "dataset_id": "GDS5007", "description": "neonate (30 min after birth)", "sample_id": [ "GSM995344", "GSM995345", "GSM995346", "GSM995347", "GSM995348", "GSM995349" ], "type": "development stage", "id": "GDS5007_2" }, { "dataset_id": "GDS5007", "description": "ductus arteriosus", "sample_id": [ "GSM995343", "GSM995342", "GSM995341", "GSM995349", "GSM995348", "GSM995347" ], "type": "tissue", "id": "GDS5007_3" }, { "dataset_id": "GDS5007", "description": "aorta", "sample_id": [ "GSM995340", "GSM995339", "GSM995338", "GSM995346", "GSM995345", "GSM995344" ], "type": "tissue", "id": "GDS5007_4" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS5007", "version": 1.0, "instances": "12", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5007.tab", "compression": "gz" } ], [ [ "GDS5008.tab" ], { "title": "Transforming growth factor beta deficiency effect on embryonic palatal mesenchymal cells", "description": "Analysis of embryonic palatal mesenchyme (PM) cells from mice with a deletion of Tgfbr2 in cranial neural crest cells. These Tgfbr2fl/fl;Wnt1-Cre mice develop cleft palate as the result of abnormal TGF\u03b2 signaling activation. Results provide insight into the role of TGF\u03b2 in palatogenesis.", "type": "Expression profiling by array", "pubmed_id": "23975680", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE46150", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS5008", "description": "Tgfbr2 conditional knockout", "sample_id": [ "GSM1125028", "GSM1125029", "GSM1125030", "GSM1125031" ], "type": "genotype/variation", "id": "GDS5008_1" }, { "dataset_id": "GDS5008", "description": "Tgfbr2 wildtype", "sample_id": [ "GSM1125032", "GSM1125033", "GSM1125034", "GSM1125035" ], "type": "genotype/variation", "id": "GDS5008_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5008", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5008.tab", "compression": "gz" } ], [ [ "GDS5009.tab" ], { "title": "Neonatal stress and morphine effects on right hippocampus", "description": "Analysis of hippocampi of postnatal day 9, C57BL/6 males exposed to mild or severe stress and morphine. Morphine is often prescribed to ameliorate preterm infant pain and stress. Results provide insight into dose-dependent, stress-related changes altered by morphine that may affect neurodevelopment.", "type": "Expression profiling by array", "pubmed_id": "21178816", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE50382", "order": "none", "update_date": "Jul 16 2014", "subsets": [ { "dataset_id": "GDS5009", "description": "none", "sample_id": [ "GSM1217777", "GSM1217782", "GSM1217785" ], "type": "stress", "id": "GDS5009_1" }, { "dataset_id": "GDS5009", "description": "mild", "sample_id": [ "GSM1217776", "GSM1217781", "GSM1217784", "GSM1217787", "GSM1217788", "GSM1217790" ], "type": "stress", "id": "GDS5009_2" }, { "dataset_id": "GDS5009", "description": "severe", "sample_id": [ "GSM1217778", "GSM1217786", "GSM1217789", "GSM1217779", "GSM1217780", "GSM1217783" ], "type": "stress", "id": "GDS5009_3" }, { "dataset_id": "GDS5009", "description": "none", "sample_id": [ "GSM1217777", "GSM1217782", "GSM1217785" ], "type": "agent", "id": "GDS5009_4" }, { "dataset_id": "GDS5009", "description": "morphine", "sample_id": [ "GSM1217776", "GSM1217781", "GSM1217784", "GSM1217778", "GSM1217786", "GSM1217789" ], "type": "agent", "id": "GDS5009_5" }, { "dataset_id": "GDS5009", "description": "saline vehicle", "sample_id": [ "GSM1217787", "GSM1217788", "GSM1217790", "GSM1217779", "GSM1217780", "GSM1217783" ], "type": "agent", "id": "GDS5009_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5009", "version": 1.0, "instances": "15", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5009.tab", "compression": "gz" } ], [ [ "GDS501.tab" ], { "title": "Inflammatory cytokine effect on primary dermal endothelial cells", "description": "Examination of gene expression induced by interferon gamma (IFNg), tumor necrosis factor alpha (TNFa) and interleukin 4 (IL4) inflammatory cytokines on primary dermal endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "15749026", "platform": "GPL371", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37331", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE569", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS501", "description": "IFNg", "sample_id": [ "GSM8752" ], "type": "agent", "id": "GDS501_1" }, { "dataset_id": "GDS501", "description": "TNFa", "sample_id": [ "GSM8757" ], "type": "agent", "id": "GDS501_2" }, { "dataset_id": "GDS501", "description": "IL4", "sample_id": [ "GSM8762" ], "type": "agent", "id": "GDS501_3" } ], "taxid": "9606", "genes": 20031, "aggregation_function": "mean", "name": "GDS501", "version": 1.0, "instances": "3", "variables": 20033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS501.tab", "compression": "gz" } ], [ [ "GDS5010.tab" ], { "title": "N-nitrosodiethylamine effect on high mobility group N 1 chromosomal protein-deficient liver", "description": "Analysis of liver from Hmgn1-/- mutants injected with N-nitrosodiethylamine (DEN). HMGN1 is a nucleosome-binding protein affecting chromatin structure/function. Results provide insight into molecular mechanisms underlying accelerated progression of DEN-induced hepatocarcinogenesis in HMGN1 mutants.", "type": "Expression profiling by array", "pubmed_id": "24296759", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE44356", "order": "none", "update_date": "Jul 16 2014", "subsets": [ { "dataset_id": "GDS5010", "description": "Hmgn1+/+ wild type", "sample_id": [ "GSM1083900", "GSM1083899", "GSM1083898", "GSM1083888", "GSM1083887", "GSM1083886", "GSM1083894", "GSM1083893", "GSM1083892" ], "type": "genotype/variation", "id": "GDS5010_1" }, { "dataset_id": "GDS5010", "description": "Hmgn1-/- knockout", "sample_id": [ "GSM1083903", "GSM1083902", "GSM1083901", "GSM1083891", "GSM1083890", "GSM1083889", "GSM1083897", "GSM1083896", "GSM1083895" ], "type": "genotype/variation", "id": "GDS5010_2" }, { "dataset_id": "GDS5010", "description": "non-injected", "sample_id": [ "GSM1083886", "GSM1083887", "GSM1083888", "GSM1083889", "GSM1083890", "GSM1083891" ], "type": "protocol", "id": "GDS5010_3" }, { "dataset_id": "GDS5010", "description": "saline-injected", "sample_id": [ "GSM1083898", "GSM1083899", "GSM1083900", "GSM1083901", "GSM1083902", "GSM1083903" ], "type": "protocol", "id": "GDS5010_4" }, { "dataset_id": "GDS5010", "description": "N-nitrosodiethylamine-injected", "sample_id": [ "GSM1083892", "GSM1083893", "GSM1083894", "GSM1083895", "GSM1083896", "GSM1083897" ], "type": "protocol", "id": "GDS5010_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5010", "version": 1.0, "instances": "18", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5010.tab", "compression": "gz" } ], [ [ "GDS5012.tab" ], { "title": "ash-2 knockdown effect on germline-deficient glp-1(e2141ts) mutant: day 8 (mid-life stage)", "description": "Analysis of day 8 germline-deficient glp-1 mutants treated with ash-2 RNAi. The ASH-2 trithorax complex trimethylates histone H3 at lysine 4 (H3K4); an intact germline is required for ASH-2-induced lifespan extension. Results provide insight into the role of histone methylation in longevity.", "type": "Expression profiling by array", "pubmed_id": "20555324", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE30505", "order": "none", "update_date": "Jun 20 2014", "subsets": [ { "dataset_id": "GDS5012", "description": "wild type", "sample_id": [ "GSM756685", "GSM756686", "GSM756687", "GSM756688", "GSM756689" ], "type": "genotype/variation", "id": "GDS5012_1" }, { "dataset_id": "GDS5012", "description": "glp-1(e2141ts) mutant", "sample_id": [ "GSM756690", "GSM756691", "GSM756692", "GSM756693", "GSM756694", "GSM756695" ], "type": "genotype/variation", "id": "GDS5012_2" }, { "dataset_id": "GDS5012", "description": "empty vector", "sample_id": [ "GSM756685", "GSM756686", "GSM756690", "GSM756691", "GSM756692" ], "type": "protocol", "id": "GDS5012_3" }, { "dataset_id": "GDS5012", "description": "ash-2 RNAi", "sample_id": [ "GSM756687", "GSM756688", "GSM756689", "GSM756693", "GSM756694", "GSM756695" ], "type": "protocol", "id": "GDS5012_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS5012", "version": 1.0, "instances": "11", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5012.tab", "compression": "gz" } ], [ [ "GDS5013.tab" ], { "title": "Dioxin exposure in utero effect on the pituitary gland at maturity", "description": "Analysis of pituitary glands of postnatal day 70 male rats exposed in utero to dioxin at gestational day 15. Rats exposed to dioxin in utero exhibit a reduced pituitary synthesis of luteinizing hormone at the late fetal and early postnatal period, leading to defects in sexual behavior at adulthood.", "type": "Expression profiling by array", "pubmed_id": "24132183", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE48100", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS5013", "description": "control", "sample_id": [ "GSM1168486", "GSM1168487", "GSM1168488" ], "type": "agent", "id": "GDS5013_1" }, { "dataset_id": "GDS5013", "description": "dioxin", "sample_id": [ "GSM1168489", "GSM1168490", "GSM1168491" ], "type": "agent", "id": "GDS5013_2" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS5013", "version": 1.0, "instances": "6", "variables": 22035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5013.tab", "compression": "gz" } ], [ [ "GDS5014.tab" ], { "title": "Dioxin exposure in utero effect on the hypothalamus at maturity", "description": "Analysis of hypothalami from postnatal day 70 male rats exposed in utero to dioxin at gestational day 15. Rats exposed to dioxin in utero exhibit a reduced pituitary synthesis of luteinizing hormone at the late fetal and early postnatal period, leading to defects in sexual behavior at adulthood.", "type": "Expression profiling by array", "pubmed_id": "24132183", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE48100", "order": "none", "update_date": "Jun 19 2014", "subsets": [ { "dataset_id": "GDS5014", "description": "control", "sample_id": [ "GSM1168492", "GSM1168493", "GSM1168494" ], "type": "agent", "id": "GDS5014_1" }, { "dataset_id": "GDS5014", "description": "dioxin", "sample_id": [ "GSM1168495", "GSM1168496", "GSM1168497" ], "type": "agent", "id": "GDS5014_2" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS5014", "version": 1.0, "instances": "6", "variables": 22035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5014.tab", "compression": "gz" } ], [ [ "GDS5015.tab" ], { "title": "Modified natural and stimulated in vitro fertilization cycles: cumulus cells", "description": "Analysis of cumulus cells surrounding mature oocytes derived from modified natural in vitro fertilization (IVF) and controlled ovarian hyperstimulation IVF cycles. Results provide insight into the molecular mechanisms underlying the lower success rates of modified natural IVF.", "type": "Expression profiling by array", "pubmed_id": "24221912", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE43684", "order": "none", "update_date": "Jul 17 2014", "subsets": [ { "dataset_id": "GDS5015", "description": "patient AH", "sample_id": [ "GSM1068180", "GSM1068186" ], "type": "individual", "id": "GDS5015_1" }, { "dataset_id": "GDS5015", "description": "patient AU", "sample_id": [ "GSM1068181", "GSM1068185" ], "type": "individual", "id": "GDS5015_2" }, { "dataset_id": "GDS5015", "description": "patient D", "sample_id": [ "GSM1068182", "GSM1068187" ], "type": "individual", "id": "GDS5015_3" }, { "dataset_id": "GDS5015", "description": "patient J", "sample_id": [ "GSM1068183" ], "type": "individual", "id": "GDS5015_4" }, { "dataset_id": "GDS5015", "description": "patient L", "sample_id": [ "GSM1068184" ], "type": "individual", "id": "GDS5015_5" }, { "dataset_id": "GDS5015", "description": "modified natural IVF", "sample_id": [ "GSM1068185", "GSM1068186", "GSM1068187" ], "type": "protocol", "id": "GDS5015_6" }, { "dataset_id": "GDS5015", "description": "controlled ovarian hyperstimulation IVF", "sample_id": [ "GSM1068180", "GSM1068181", "GSM1068182", "GSM1068183", "GSM1068184" ], "type": "protocol", "id": "GDS5015_7" }, { "dataset_id": "GDS5015", "description": "none", "sample_id": [ "GSM1068185", "GSM1068186", "GSM1068187" ], "type": "agent", "id": "GDS5015_8" }, { "dataset_id": "GDS5015", "description": "gonadotropin-releasing hormone agonist", "sample_id": [ "GSM1068180", "GSM1068181", "GSM1068184" ], "type": "agent", "id": "GDS5015_9" }, { "dataset_id": "GDS5015", "description": "gonadotropin-releasing hormone antagonist", "sample_id": [ "GSM1068182", "GSM1068183" ], "type": "agent", "id": "GDS5015_10" }, { "dataset_id": "GDS5015", "description": "cumulus cells of MII-morulae ooycyte", "sample_id": [ "GSM1068186", "GSM1068187" ], "type": "cell type", "id": "GDS5015_11" }, { "dataset_id": "GDS5015", "description": "cumulus cells of MII-blastocyst oocyte", "sample_id": [ "GSM1068180", "GSM1068181", "GSM1068182", "GSM1068183", "GSM1068184", "GSM1068185" ], "type": "cell type", "id": "GDS5015_12" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5015", "version": 1.0, "instances": "8", "variables": 26808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5015.tab", "compression": "gz" } ], [ [ "GDS5016.tab" ], { "title": "Male and female in vitro cultured placental cell types", "description": "Analysis of four cell types from the placentas of male or female fetuses: cytotrophoblasts, syncytiotrophoblasts, and arterial and venous endothelial cells. Results provide insight into sex-biased molecular mechanisms underlying functional differences in gestations from male and female fetuses.", "type": "Expression profiling by array", "pubmed_id": "24205377", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE44368", "order": "none", "update_date": "Jul 18 2014", "subsets": [ { "dataset_id": "GDS5016", "description": "male", "sample_id": [ "GSM1084005", "GSM1084004", "GSM1084003", "GSM1083998", "GSM1083986", "GSM1083985", "GSM1083984", "GSM1083981", "GSM1083979", "GSM1083978", "GSM1083977", "GSM1083976", "GSM1084001", "GSM1084000", "GSM1083999", "GSM1084002" ], "type": "gender", "id": "GDS5016_1" }, { "dataset_id": "GDS5016", "description": "female", "sample_id": [ "GSM1083997", "GSM1083996", "GSM1083995", "GSM1083994", "GSM1083989", "GSM1083988", "GSM1083987", "GSM1083983", "GSM1083982", "GSM1083980", "GSM1083975", "GSM1083974", "GSM1083993", "GSM1083992", "GSM1083991", "GSM1083990" ], "type": "gender", "id": "GDS5016_2" }, { "dataset_id": "GDS5016", "description": "arterial endothelial", "sample_id": [ "GSM1084002", "GSM1083990", "GSM1083999", "GSM1083991", "GSM1083992", "GSM1083993", "GSM1084000", "GSM1084001" ], "type": "cell type", "id": "GDS5016_3" }, { "dataset_id": "GDS5016", "description": "cytotrophoblast", "sample_id": [ "GSM1083974", "GSM1083975", "GSM1083976", "GSM1083977", "GSM1083978", "GSM1083979", "GSM1083980", "GSM1083981", "GSM1083982", "GSM1083983" ], "type": "cell type", "id": "GDS5016_4" }, { "dataset_id": "GDS5016", "description": "syncytiotrophoblast", "sample_id": [ "GSM1083984", "GSM1083985", "GSM1083986", "GSM1083987", "GSM1083988", "GSM1083989" ], "type": "cell type", "id": "GDS5016_5" }, { "dataset_id": "GDS5016", "description": "venous endothelial", "sample_id": [ "GSM1083998", "GSM1083994", "GSM1084003", "GSM1083995", "GSM1083996", "GSM1083997", "GSM1084004", "GSM1084005" ], "type": "cell type", "id": "GDS5016_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5016", "version": 1.0, "instances": "32", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5016.tab", "compression": "gz" } ], [ [ "GDS5017.tab" ], { "title": "Newly diagnosed and chronic pediatric immune thrombocytopenia: peripheral blood T-cells", "description": "Analysis of T-cells from children with newly diagnosed ITP and children with chronic ITP. ITP is an autoimmune disease that resolves in the majority of children but becomes chronic in others. Results provide insight into molecular mechanisms underlying the newly diagnosed and chronic phases of ITP.", "type": "Expression profiling by array", "pubmed_id": "23869085", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE46922", "order": "none", "update_date": "Jul 18 2014", "subsets": [ { "dataset_id": "GDS5017", "description": "newly diagnosed immune thrombocytopenia", "sample_id": [ "GSM1141222", "GSM1141223", "GSM1141224", "GSM1141225", "GSM1141226", "GSM1141227", "GSM1141228" ], "type": "disease state", "id": "GDS5017_1" }, { "dataset_id": "GDS5017", "description": "chronic immune thrombocytopenia", "sample_id": [ "GSM1141229", "GSM1141230", "GSM1141231", "GSM1141232", "GSM1141233", "GSM1141234" ], "type": "disease state", "id": "GDS5017_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5017", "version": 1.0, "instances": "13", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5017.tab", "compression": "gz" } ], [ [ "GDS5018.tab" ], { "title": "Nonobese diabetic NOD spleen CD4 T-cells: 2-week old females", "description": "Analysis of CD4 T-cells from 2-week old NOD females in the preinsulitis stage of Type 1 diabetes. Control strains NOR (~88% similarity to NOD genome) and C57BL/6 (genetically distant) are both insulitis- and diabetes-free. Results provide insight into molecular basis of CD4 T-cell diabetogenesis.", "type": "Expression profiling by array", "pubmed_id": "24918037", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE46600", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5018", "description": "NOD", "sample_id": [ "GSM1133080", "GSM1133081", "GSM1133082", "GSM1133083" ], "type": "strain", "id": "GDS5018_1" }, { "dataset_id": "GDS5018", "description": "NOR", "sample_id": [ "GSM1133084", "GSM1133085", "GSM1133086", "GSM1133087", "GSM1133088" ], "type": "strain", "id": "GDS5018_2" }, { "dataset_id": "GDS5018", "description": "C57BL/6", "sample_id": [ "GSM1133089", "GSM1133090", "GSM1133091", "GSM1133092", "GSM1133093" ], "type": "strain", "id": "GDS5018_3" }, { "dataset_id": "GDS5018", "description": "diabetic", "sample_id": [ "GSM1133080", "GSM1133081", "GSM1133082", "GSM1133083" ], "type": "disease state", "id": "GDS5018_4" }, { "dataset_id": "GDS5018", "description": "non-diabetic", "sample_id": [ "GSM1133084", "GSM1133085", "GSM1133086", "GSM1133087", "GSM1133088", "GSM1133089", "GSM1133090", "GSM1133091", "GSM1133092", "GSM1133093" ], "type": "disease state", "id": "GDS5018_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5018", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5018.tab", "compression": "gz" } ], [ [ "GDS5019.tab" ], { "title": "Nonobese diabetic NOD spleen CD4 T-cells: 3-week old females", "description": "Analysis of CD4 T-cells from 3-week old NOD females in the preinsulitis stage of Type 1 diabetes. Control strains NOR (~88% similarity to NOD genome) and C57BL/6 (genetically distant) are both insulitis- and diabetes-free. Results provide insight into molecular basis of CD4 T-cell diabetogenesis.", "type": "Expression profiling by array", "pubmed_id": "24918037", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE46600", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5019", "description": "NOD", "sample_id": [ "GSM1133094", "GSM1133095", "GSM1133096", "GSM1133097", "GSM1133098" ], "type": "strain", "id": "GDS5019_1" }, { "dataset_id": "GDS5019", "description": "NOR", "sample_id": [ "GSM1133099", "GSM1133100", "GSM1133101", "GSM1133102", "GSM1133103" ], "type": "strain", "id": "GDS5019_2" }, { "dataset_id": "GDS5019", "description": "C57BL/6", "sample_id": [ "GSM1133104", "GSM1133105", "GSM1133106", "GSM1133107", "GSM1133108" ], "type": "strain", "id": "GDS5019_3" }, { "dataset_id": "GDS5019", "description": "diabetic", "sample_id": [ "GSM1133094", "GSM1133095", "GSM1133096", "GSM1133097", "GSM1133098" ], "type": "disease state", "id": "GDS5019_4" }, { "dataset_id": "GDS5019", "description": "non-diabetic", "sample_id": [ "GSM1133104", "GSM1133105", "GSM1133106", "GSM1133107", "GSM1133108", "GSM1133099", "GSM1133100", "GSM1133101", "GSM1133102", "GSM1133103" ], "type": "disease state", "id": "GDS5019_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5019", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5019.tab", "compression": "gz" } ], [ [ "GDS502.tab" ], { "title": "Inflammatory cytokine effect on primary colon endothelial cells", "description": "Examination of gene expression induced by interferon gamma (IFNg), tumor necrosis factor alpha (TNFa) and interleukin 4 (IL4) inflammatory cytokines on primary colon endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "15749026", "platform": "GPL371", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "37331", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "3", "value_type": "log ratio", "reference_series": "GSE569", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS502", "description": "IFNg", "sample_id": [ "GSM8753" ], "type": "agent", "id": "GDS502_1" }, { "dataset_id": "GDS502", "description": "TNFa", "sample_id": [ "GSM8758" ], "type": "agent", "id": "GDS502_2" }, { "dataset_id": "GDS502", "description": "IL4", "sample_id": [ "GSM8763" ], "type": "agent", "id": "GDS502_3" } ], "taxid": "9606", "genes": 20031, "aggregation_function": "mean", "name": "GDS502", "version": 1.0, "instances": "3", "variables": 20033, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS502.tab", "compression": "gz" } ], [ [ "GDS5020.tab" ], { "title": "Nonobese diabetic NOD spleen CD4 T-cells: 4-week old females", "description": "Analysis of CD4 T-cells from 4-week old NOD females in the preinsulitis stage of Type 1 diabetes. Control strains NOR (~88% similarity to NOD genome) and C57BL/6 (genetically distant) are both insulitis- and diabetes-free. Results provide insight into molecular basis of CD4 T-cell diabetogenesis.", "type": "Expression profiling by array", "pubmed_id": "24918037", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE46600", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5020", "description": "NOD", "sample_id": [ "GSM1133109", "GSM1133110", "GSM1133111", "GSM1133112", "GSM1133113" ], "type": "strain", "id": "GDS5020_1" }, { "dataset_id": "GDS5020", "description": "NOR", "sample_id": [ "GSM1133114", "GSM1133115", "GSM1133116", "GSM1133117", "GSM1133118" ], "type": "strain", "id": "GDS5020_2" }, { "dataset_id": "GDS5020", "description": "C57BL/6", "sample_id": [ "GSM1133119", "GSM1133120", "GSM1133121", "GSM1133122", "GSM1133123" ], "type": "strain", "id": "GDS5020_3" }, { "dataset_id": "GDS5020", "description": "diabetic", "sample_id": [ "GSM1133109", "GSM1133110", "GSM1133111", "GSM1133112", "GSM1133113" ], "type": "disease state", "id": "GDS5020_4" }, { "dataset_id": "GDS5020", "description": "non-diabetic", "sample_id": [ "GSM1133114", "GSM1133115", "GSM1133116", "GSM1133117", "GSM1133118", "GSM1133119", "GSM1133120", "GSM1133121", "GSM1133122", "GSM1133123" ], "type": "disease state", "id": "GDS5020_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5020", "version": 1.0, "instances": "15", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5020.tab", "compression": "gz" } ], [ [ "GDS5021.tab" ], { "title": "Placenta response to maternal choline intake throughout the third trimester of pregnancy: dose response", "description": "Analysis of placenta retrieved at delivery from healthy women who consumed up to 930mg choline/day throughout their third trimester of pregnancy. Results provide insight into the molecular mechanisms underlying the benefits of maternal choline supplementation on placental function.", "type": "Expression profiling by array", "pubmed_id": "23195033", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE39290", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS5021", "description": "480 mg choline/day", "sample_id": [ "GSM960125", "GSM960126", "GSM960127", "GSM960128", "GSM960129", "GSM960130" ], "type": "dose", "id": "GDS5021_1" }, { "dataset_id": "GDS5021", "description": "930 mg choline/day", "sample_id": [ "GSM960131", "GSM960132", "GSM960133", "GSM960134", "GSM960135", "GSM960136" ], "type": "dose", "id": "GDS5021_2" }, { "dataset_id": "GDS5021", "description": "female offspring", "sample_id": [ "GSM960125", "GSM960131", "GSM960133" ], "type": "gender", "id": "GDS5021_3" }, { "dataset_id": "GDS5021", "description": "male offspring", "sample_id": [ "GSM960126", "GSM960127", "GSM960128", "GSM960129", "GSM960130", "GSM960132", "GSM960134", "GSM960135", "GSM960136" ], "type": "gender", "id": "GDS5021_4" }, { "dataset_id": "GDS5021", "description": "C-section delivery", "sample_id": [ "GSM960125" ], "type": "other", "id": "GDS5021_5" }, { "dataset_id": "GDS5021", "description": "vaginal delivery", "sample_id": [ "GSM960126", "GSM960127", "GSM960128", "GSM960129", "GSM960130", "GSM960131", "GSM960132", "GSM960133", "GSM960134", "GSM960135", "GSM960136" ], "type": "other", "id": "GDS5021_6" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5021", "version": 1.0, "instances": "12", "variables": 29820, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5021.tab", "compression": "gz" } ], [ [ "GDS5022.tab" ], { "title": "First-time acute myocardial infarction patients with or without recurrent event: peripheral blood", "description": "Analysis of blood from first-time acute myocardial infarction (AMI) patients, clinically indistinguishable at baseline, with or without recurrent cardiovascular events at 18 months. Results provide insight into molecular mechanisms distinguishing AMI patients with or without recurrent events.", "type": "Expression profiling by array", "pubmed_id": "24801707", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "transformed count", "reference_series": "GSE48060", "order": "none", "update_date": "Aug 13 2014", "subsets": [ { "dataset_id": "GDS5022", "description": "acute myocardial infarction with recurrent event", "sample_id": [ "GSM1167097", "GSM1167088", "GSM1167081", "GSM1167078", "GSM1167072" ], "type": "disease state", "id": "GDS5022_1" }, { "dataset_id": "GDS5022", "description": "acute myocardial infarction without recurrent event", "sample_id": [ "GSM1167122", "GSM1167101", "GSM1167100", "GSM1167099", "GSM1167098", "GSM1167096", "GSM1167095", "GSM1167094", "GSM1167093", "GSM1167092", "GSM1167091", "GSM1167090", "GSM1167089", "GSM1167087", "GSM1167086", "GSM1167085", "GSM1167084", "GSM1167083", "GSM1167082", "GSM1167080", "GSM1167079", "GSM1167077", "GSM1167076", "GSM1167075", "GSM1167074", "GSM1167073" ], "type": "disease state", "id": "GDS5022_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5022", "version": 1.0, "instances": "31", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5022.tab", "compression": "gz" } ], [ [ "GDS5023.tab" ], { "title": "Fibroblast growth factor receptor inhibition effect on malignant urothelial cells deficient in TGF\u03b2-activated kinase 1", "description": "Analysis of fibroblast growth factor receptor 3 (FGFR3)-positive, MGHU3 (Y375C) bladder cancer cells depleted for TGF\u03b2-activated kinase 1 (TAK1) then treated with FGFR-specific PD173074 inhibitor. Results provide insight into the integration of TAK1 and FGFR3 signaling in bladder cancer.", "type": "Expression profiling by array", "pubmed_id": "24466111", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE52452", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5023", "description": "TAK1 siRNA", "sample_id": [ "GSM1267156", "GSM1267157", "GSM1267158", "GSM1267159", "GSM1267160", "GSM1267161" ], "type": "genotype/variation", "id": "GDS5023_1" }, { "dataset_id": "GDS5023", "description": "control siRNA", "sample_id": [ "GSM1267150", "GSM1267151", "GSM1267152", "GSM1267153", "GSM1267154", "GSM1267155" ], "type": "genotype/variation", "id": "GDS5023_2" }, { "dataset_id": "GDS5023", "description": "control", "sample_id": [ "GSM1267150", "GSM1267151", "GSM1267152", "GSM1267159", "GSM1267160", "GSM1267161" ], "type": "agent", "id": "GDS5023_3" }, { "dataset_id": "GDS5023", "description": "FGFR inhibitor PD173074", "sample_id": [ "GSM1267153", "GSM1267154", "GSM1267155", "GSM1267156", "GSM1267157", "GSM1267158" ], "type": "agent", "id": "GDS5023_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5023", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5023.tab", "compression": "gz" } ], [ [ "GDS5024.tab" ], { "title": "Induced myeloproliferative neoplasm effect on Scl-tTA::TRE-BCR/ABL double-transgenic model of chronic myeloid leukemia: osteoblastic lineage cells", "description": "Analysis of osteoblastic lineage cells (OBC) from Scl-tTA::TRE-BCR/ABL (BA) double-transgenics withdrawn from doxycycline at 5 weeks of age to induce myeloproliferative neoplasia (MPN). MPN development drives OBC expansion. Results provide insight into molecular features of MPN-expanded OBCs.", "type": "Expression profiling by array", "pubmed_id": "23850243", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE48438", "order": "none", "update_date": "Jul 23 2014", "subsets": [ { "dataset_id": "GDS5024", "description": "Scl-tTA::TRE-BCR/ABL", "sample_id": [ "GSM1178737", "GSM1178738", "GSM1178739", "GSM1178740", "GSM1178741" ], "type": "genotype/variation", "id": "GDS5024_1" }, { "dataset_id": "GDS5024", "description": "control", "sample_id": [ "GSM1178732", "GSM1178733", "GSM1178734", "GSM1178735", "GSM1178736" ], "type": "genotype/variation", "id": "GDS5024_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5024", "version": 1.0, "instances": "10", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5024.tab", "compression": "gz" } ], [ [ "GDS5025.tab" ], { "title": "Age and gender effect on brain", "description": "Analysis of brain from young (7.5-8.5 months) and old (31-36 months) wildtype males and females. Brains are sexually dimorphic in adults. Results provide insight into the molecular mechanisms associated with brain aging across gender.", "type": "Expression profiling by array", "pubmed_id": "24548546", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE53430", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5025", "description": "young (7.5-8.5 months old)", "sample_id": [ "GSM1293356", "GSM1293354", "GSM1293351", "GSM1293349", "GSM1293348", "GSM1293346" ], "type": "age", "id": "GDS5025_1" }, { "dataset_id": "GDS5025", "description": "old (31-36 months old)", "sample_id": [ "GSM1293355", "GSM1293353", "GSM1293347", "GSM1293357", "GSM1293352", "GSM1293350" ], "type": "age", "id": "GDS5025_2" }, { "dataset_id": "GDS5025", "description": "male", "sample_id": [ "GSM1293357", "GSM1293352", "GSM1293350", "GSM1293349", "GSM1293348", "GSM1293346" ], "type": "gender", "id": "GDS5025_3" }, { "dataset_id": "GDS5025", "description": "female", "sample_id": [ "GSM1293355", "GSM1293353", "GSM1293347", "GSM1293356", "GSM1293354", "GSM1293351" ], "type": "gender", "id": "GDS5025_4" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS5025", "version": 1.0, "instances": "12", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5025.tab", "compression": "gz" } ], [ [ "GDS5026.tab" ], { "title": "17\u03b2-estradiol effect on breast adenocarcinoma cells deficient in extracellular signal-regulated kinase 5", "description": "Analysis of MCF-7 breast cancer (BC) cells depleted for ERK5 then treated with 17\u03b2-estradiol. Increased kinase activity is associated with a poorer outcome for BC patients. Results provide insight into the interplay between estrogen receptor and protein kinase pathways to regulate BC aggressiveness", "type": "Expression profiling by array", "pubmed_id": "24505128", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE53394", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5026", "description": "ERK5 knockdown (siERK5)", "sample_id": [ "GSM1290797", "GSM1290798", "GSM1290795", "GSM1290796" ], "type": "genotype/variation", "id": "GDS5026_1" }, { "dataset_id": "GDS5026", "description": "control (siGL3)", "sample_id": [ "GSM1290793", "GSM1290794", "GSM1290791", "GSM1290792" ], "type": "genotype/variation", "id": "GDS5026_2" }, { "dataset_id": "GDS5026", "description": "17\u03b2-estradiol (E2)", "sample_id": [ "GSM1290793", "GSM1290794", "GSM1290797", "GSM1290798" ], "type": "agent", "id": "GDS5026_3" }, { "dataset_id": "GDS5026", "description": "control", "sample_id": [ "GSM1290791", "GSM1290792", "GSM1290795", "GSM1290796" ], "type": "agent", "id": "GDS5026_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5026", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5026.tab", "compression": "gz" } ], [ [ "GDS5027.tab" ], { "title": "NeOAdjuvant Herceptin (NOAH) trial: formalin-fixed, paraffin-embedded breast cancer biopsies", "description": "Analysis of FFPE core biopsies from pre-treated patients with HER2+ breast cancer (BC) randomized to receive neoadjuvant chemotherapy only or chemotherapy+trastuzumab (herceptin). Results provide insight into the molecular basis of survival outcomes following trastuzumab-based chemotherapy.", "type": "Expression profiling by array", "pubmed_id": "24443618", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "156", "value_type": "transformed count", "reference_series": "GSE50948", "order": "none", "update_date": "May 18 2016", "subsets": [ { "dataset_id": "GDS5027", "description": "HER2+", "sample_id": [ "GSM1232992", "GSM1232993", "GSM1232994", "GSM1232995", "GSM1232996", "GSM1232997", "GSM1232998", "GSM1232999", "GSM1233000", "GSM1233001", "GSM1233002", "GSM1233003", "GSM1233004", "GSM1233005", "GSM1233006", "GSM1233007", "GSM1233008", "GSM1233009", "GSM1233010", "GSM1233011", "GSM1233012", "GSM1233013", "GSM1233014", "GSM1233015", "GSM1233016", "GSM1233017", "GSM1233018", "GSM1233019", "GSM1233020", "GSM1233021", "GSM1233022", "GSM1233023", "GSM1233024", "GSM1233025", "GSM1233026", "GSM1233027", "GSM1233028", "GSM1233029", "GSM1233030", "GSM1233031", "GSM1233032", "GSM1233033", "GSM1233034", "GSM1233035", "GSM1233036", "GSM1233037", "GSM1233038", "GSM1233039", "GSM1233040", "GSM1233041", "GSM1233042", "GSM1233043", "GSM1233044", "GSM1233045", "GSM1233046", "GSM1233047", "GSM1233048", "GSM1233049", "GSM1233050", "GSM1233051", "GSM1233052", "GSM1233053", "GSM1233054", "GSM1233055", "GSM1233056", "GSM1233057", "GSM1233058", "GSM1233059", "GSM1233060", "GSM1233061", "GSM1233062", "GSM1233063", "GSM1233064", "GSM1233065", "GSM1233066", "GSM1233068", "GSM1233070", "GSM1233071", "GSM1233073", "GSM1233074", "GSM1233075", "GSM1233076", "GSM1233077", "GSM1233078", "GSM1233079", "GSM1233080", "GSM1233081", "GSM1233082", "GSM1233083", "GSM1233084", "GSM1233087", "GSM1233088", "GSM1233089", "GSM1233090", "GSM1233091", "GSM1233092", "GSM1233093", "GSM1233094", "GSM1233095", "GSM1233096", "GSM1233097", "GSM1233099", "GSM1233100", "GSM1233101", "GSM1233104", "GSM1233105", "GSM1233106", "GSM1233111", "GSM1233112", "GSM1233115", "GSM1233117", "GSM1233118", "GSM1233122", "GSM1233146" ], "type": "genotype/variation", "id": "GDS5027_1" }, { "dataset_id": "GDS5027", "description": "HER2-", "sample_id": [ "GSM1233067", "GSM1233069", "GSM1233072", "GSM1233085", "GSM1233086", "GSM1233098", "GSM1233102", "GSM1233103", "GSM1233107", "GSM1233108", "GSM1233109", "GSM1233110", "GSM1233113", "GSM1233114", "GSM1233116", "GSM1233119", "GSM1233120", "GSM1233121", "GSM1233123", "GSM1233124", "GSM1233125", "GSM1233126", "GSM1233127", "GSM1233128", "GSM1233129", "GSM1233130", "GSM1233131", "GSM1233132", "GSM1233133", "GSM1233134", "GSM1233135", "GSM1233136", "GSM1233137", "GSM1233138", "GSM1233139", "GSM1233140", "GSM1233141", "GSM1233142", "GSM1233143", "GSM1233144", "GSM1233145", "GSM1233147" ], "type": "genotype/variation", "id": "GDS5027_2" }, { "dataset_id": "GDS5027", "description": "doxorubicin/paclitaxel + cyclophosphamide/methotrexate/fluorouracil", "sample_id": [ "GSM1233067", "GSM1233069", "GSM1233072", "GSM1233085", "GSM1233086", "GSM1233098", "GSM1233102", "GSM1233103", "GSM1233107", "GSM1233108", "GSM1233109", "GSM1233110", "GSM1233113", "GSM1233114", "GSM1233116", "GSM1233119", "GSM1233120", "GSM1233121", "GSM1233123", "GSM1233124", "GSM1233125", "GSM1233126", "GSM1233127", "GSM1233128", "GSM1233129", "GSM1233130", "GSM1233131", "GSM1233132", "GSM1233133", "GSM1233134", "GSM1233135", "GSM1233136", "GSM1233137", "GSM1233138", "GSM1233139", "GSM1233140", "GSM1233141", "GSM1233142", "GSM1233143", "GSM1233144", "GSM1233145", "GSM1233147", "GSM1232992", "GSM1232993", "GSM1232995", "GSM1233002", "GSM1233003", "GSM1233005", "GSM1233007", "GSM1233010", "GSM1233013", "GSM1233014", "GSM1233015", "GSM1233016", "GSM1233018", "GSM1233019", "GSM1233021", "GSM1233024", "GSM1233025", "GSM1233029", "GSM1233030", "GSM1233031", "GSM1233032", "GSM1233035", "GSM1233038", "GSM1233039", "GSM1233042", "GSM1233043", "GSM1233044", "GSM1233046", "GSM1233049", "GSM1233051", "GSM1233054", "GSM1233057", "GSM1233060", "GSM1233062", "GSM1233064", "GSM1233068", "GSM1233073", "GSM1233075", "GSM1233078", "GSM1233079", "GSM1233082", "GSM1233083", "GSM1233091", "GSM1233093", "GSM1233095", "GSM1233096", "GSM1233101", "GSM1233105", "GSM1233115", "GSM1233117", "GSM1233118" ], "type": "protocol", "id": "GDS5027_3" }, { "dataset_id": "GDS5027", "description": "doxorubicin/paclitaxel + cyclophosphamide/methotrexate/fluorouracil + trastuzumab", "sample_id": [ "GSM1232994", "GSM1232996", "GSM1232997", "GSM1232998", "GSM1232999", "GSM1233000", "GSM1233001", "GSM1233004", "GSM1233006", "GSM1233008", "GSM1233009", "GSM1233011", "GSM1233012", "GSM1233017", "GSM1233020", "GSM1233022", "GSM1233023", "GSM1233026", "GSM1233027", "GSM1233028", "GSM1233033", "GSM1233034", "GSM1233036", "GSM1233037", "GSM1233040", "GSM1233041", "GSM1233045", "GSM1233047", "GSM1233048", "GSM1233050", "GSM1233052", "GSM1233053", "GSM1233055", "GSM1233056", "GSM1233058", "GSM1233059", "GSM1233061", "GSM1233063", "GSM1233065", "GSM1233066", "GSM1233070", "GSM1233071", "GSM1233074", "GSM1233076", "GSM1233077", "GSM1233080", "GSM1233081", "GSM1233084", "GSM1233087", "GSM1233088", "GSM1233089", "GSM1233090", "GSM1233092", "GSM1233094", "GSM1233097", "GSM1233099", "GSM1233100", "GSM1233104", "GSM1233106", "GSM1233111", "GSM1233112", "GSM1233122", "GSM1233146" ], "type": "protocol", "id": "GDS5027_4" }, { "dataset_id": "GDS5027", "description": "response group: pathohistologic complete remission (pCR)", "sample_id": [ "GSM1233085", "GSM1233098", "GSM1233114", "GSM1233119", "GSM1233129", "GSM1233132", "GSM1233139", "GSM1233143", "GSM1233145", "GSM1232995", "GSM1233002", "GSM1233003", "GSM1233014", "GSM1233015", "GSM1233016", "GSM1233024", "GSM1233049", "GSM1233064", "GSM1233068", "GSM1233073", "GSM1233093", "GSM1233115", "GSM1233001", "GSM1233006", "GSM1233008", "GSM1233009", "GSM1233017", "GSM1233020", "GSM1233022", "GSM1233026", "GSM1233028", "GSM1233034", "GSM1233040", "GSM1233048", "GSM1233056", "GSM1233058", "GSM1233059", "GSM1233066", "GSM1233071", "GSM1233074", "GSM1233076", "GSM1233080", "GSM1233088", "GSM1233090", "GSM1233092", "GSM1233094", "GSM1233097", "GSM1233100", "GSM1233104", "GSM1233106", "GSM1233111", "GSM1233122", "GSM1233146" ], "type": "other", "id": "GDS5027_5" }, { "dataset_id": "GDS5027", "description": "response group: residual disease (RD)", "sample_id": [ "GSM1233067", "GSM1233069", "GSM1233072", "GSM1233086", "GSM1233102", "GSM1233103", "GSM1233107", "GSM1233108", "GSM1233109", "GSM1233110", "GSM1233113", "GSM1233116", "GSM1233120", "GSM1233121", "GSM1233123", "GSM1233124", "GSM1233125", "GSM1233126", "GSM1233127", "GSM1233128", "GSM1233130", "GSM1233131", "GSM1233133", "GSM1233134", "GSM1233135", "GSM1233136", "GSM1233137", "GSM1233138", "GSM1233140", "GSM1233141", "GSM1233142", "GSM1233144", "GSM1233147", "GSM1232992", "GSM1232993", "GSM1233005", "GSM1233007", "GSM1233010", "GSM1233013", "GSM1233018", "GSM1233019", "GSM1233021", "GSM1233025", "GSM1233029", "GSM1233030", "GSM1233031", "GSM1233032", "GSM1233035", "GSM1233038", "GSM1233039", "GSM1233042", "GSM1233043", "GSM1233044", "GSM1233046", "GSM1233051", "GSM1233054", "GSM1233057", "GSM1233060", "GSM1233062", "GSM1233075", "GSM1233078", "GSM1233079", "GSM1233082", "GSM1233083", "GSM1233091", "GSM1233095", "GSM1233096", "GSM1233101", "GSM1233105", "GSM1233117", "GSM1233118", "GSM1232994", "GSM1232996", "GSM1232997", "GSM1232998", "GSM1232999", "GSM1233000", "GSM1233004", "GSM1233011", "GSM1233012", "GSM1233023", "GSM1233027", "GSM1233033", "GSM1233036", "GSM1233037", "GSM1233041", "GSM1233045", "GSM1233047", "GSM1233050", "GSM1233052", "GSM1233053", "GSM1233055", "GSM1233061", "GSM1233063", "GSM1233065", "GSM1233070", "GSM1233077", "GSM1233081", "GSM1233084", "GSM1233087", "GSM1233089", "GSM1233099", "GSM1233112" ], "type": "other", "id": "GDS5027_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5027", "version": 1.0, "instances": "156", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5027.tab", "compression": "gz" } ], [ [ "GDS5028.tab" ], { "title": "In vitro differentiated amniotic-fluid kidney progenitor cell-podocytes", "description": "Analysis of differentiated cells: triple positive sorted, amniotic-fluid kidney progenitor cell-podocytes (hAKPC-P) and conditionally immortalized re-differentiated podocytes (hIPod). Results provide comparison of cell types and insight into mechanisms of stem cell differentiation into podocytes.", "type": "Expression profiling by array", "pubmed_id": "24349133", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE49439", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5028", "description": "amniotic fluid derived hAKPC-P", "sample_id": [ "GSM1199234", "GSM1199235", "GSM1199236" ], "type": "cell line", "id": "GDS5028_1" }, { "dataset_id": "GDS5028", "description": "immortalized podocyte cell line hIPod", "sample_id": [ "GSM1199240", "GSM1199241", "GSM1199242" ], "type": "cell line", "id": "GDS5028_2" }, { "dataset_id": "GDS5028", "description": "differentiated with VRADD Media", "sample_id": [ "GSM1199234", "GSM1199235", "GSM1199236" ], "type": "growth protocol", "id": "GDS5028_3" }, { "dataset_id": "GDS5028", "description": "re-differentiated at 37C in VRADD media", "sample_id": [ "GSM1199240", "GSM1199241", "GSM1199242" ], "type": "growth protocol", "id": "GDS5028_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5028", "version": 1.0, "instances": "6", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5028.tab", "compression": "gz" } ], [ [ "GDS5029.tab" ], { "title": "SW480 KRAS-mutant colorectal cancer cell line response to dual inhibition of tankyrase and MEK: time course", "description": "Analysis of SW480 cancer cells treated with tankyrase inhibitor, MEK inhibitor, or both, for up to 16hrs. Dual inhibition of TNKS and MEK led to tumor regression. Results provide insight into molecular mechanisms underlying the synergistic effects of TNKS and MEK inhibitors in KRAS-mutant cancers.", "type": "Expression profiling by array", "pubmed_id": "24747911", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE55624", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5029", "description": "untreated", "sample_id": [ "GSM1340521", "GSM1340522" ], "type": "protocol", "id": "GDS5029_1" }, { "dataset_id": "GDS5029", "description": "DMSO", "sample_id": [ "GSM1340531", "GSM1340532", "GSM1340523", "GSM1340524" ], "type": "protocol", "id": "GDS5029_2" }, { "dataset_id": "GDS5029", "description": "MEK inhibitor", "sample_id": [ "GSM1340535", "GSM1340536", "GSM1340527", "GSM1340528" ], "type": "protocol", "id": "GDS5029_3" }, { "dataset_id": "GDS5029", "description": "tankyrase inhibitor", "sample_id": [ "GSM1340533", "GSM1340534", "GSM1340525", "GSM1340526" ], "type": "protocol", "id": "GDS5029_4" }, { "dataset_id": "GDS5029", "description": "tankyrase and MEK inhibitors", "sample_id": [ "GSM1340537", "GSM1340538", "GSM1340529", "GSM1340530" ], "type": "protocol", "id": "GDS5029_5" }, { "dataset_id": "GDS5029", "description": "control", "sample_id": [ "GSM1340521", "GSM1340522" ], "type": "time", "id": "GDS5029_6" }, { "dataset_id": "GDS5029", "description": "4 hours", "sample_id": [ "GSM1340523", "GSM1340524", "GSM1340525", "GSM1340526", "GSM1340527", "GSM1340528", "GSM1340529", "GSM1340530" ], "type": "time", "id": "GDS5029_7" }, { "dataset_id": "GDS5029", "description": "16 hours", "sample_id": [ "GSM1340531", "GSM1340532", "GSM1340533", "GSM1340534", "GSM1340535", "GSM1340536", "GSM1340537", "GSM1340538" ], "type": "time", "id": "GDS5029_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5029", "version": 1.0, "instances": "18", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5029.tab", "compression": "gz" } ], [ [ "GDS5030.tab" ], { "title": "Anti-TB chemotherapy effect on peripheral blood mononuclear cells from active tuberculosis patients: time course", "description": "Analysis of PBMCs from patients with active pulmonary tuberculosis (PTB) up to 6 months after initiation of anti-tuberculosis chemotherapy treatment. Results provide insight into the molecular mechanisms associated with PTB.", "type": "Expression profiling by array", "pubmed_id": "24647646", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE54992", "order": "none", "update_date": "Jul 01 2014", "subsets": [ { "dataset_id": "GDS5030", "description": "month 0", "sample_id": [ "GSM1327528", "GSM1327535", "GSM1327530", "GSM1327527", "GSM1327529", "GSM1327540", "GSM1327531", "GSM1327533", "GSM1327526" ], "type": "time", "id": "GDS5030_1" }, { "dataset_id": "GDS5030", "description": "month 3", "sample_id": [ "GSM1327536", "GSM1327557", "GSM1327538", "GSM1327534", "GSM1327537", "GSM1327559", "GSM1327554", "GSM1327555", "GSM1327532" ], "type": "time", "id": "GDS5030_2" }, { "dataset_id": "GDS5030", "description": "month 6", "sample_id": [ "GSM1327553", "GSM1327563", "GSM1327560", "GSM1327556", "GSM1327558", "GSM1327564", "GSM1327561", "GSM1327562", "GSM1327552" ], "type": "time", "id": "GDS5030_3" }, { "dataset_id": "GDS5030", "description": "TB 1", "sample_id": [ "GSM1327552", "GSM1327532", "GSM1327526" ], "type": "individual", "id": "GDS5030_4" }, { "dataset_id": "GDS5030", "description": "TB 2", "sample_id": [ "GSM1327562", "GSM1327555", "GSM1327533" ], "type": "individual", "id": "GDS5030_5" }, { "dataset_id": "GDS5030", "description": "TB 3", "sample_id": [ "GSM1327561", "GSM1327554", "GSM1327531" ], "type": "individual", "id": "GDS5030_6" }, { "dataset_id": "GDS5030", "description": "TB 4", "sample_id": [ "GSM1327564", "GSM1327559", "GSM1327540" ], "type": "individual", "id": "GDS5030_7" }, { "dataset_id": "GDS5030", "description": "TB 5", "sample_id": [ "GSM1327558", "GSM1327537", "GSM1327529" ], "type": "individual", "id": "GDS5030_8" }, { "dataset_id": "GDS5030", "description": "TB 6", "sample_id": [ "GSM1327556", "GSM1327534", "GSM1327527" ], "type": "individual", "id": "GDS5030_9" }, { "dataset_id": "GDS5030", "description": "TB 7", "sample_id": [ "GSM1327560", "GSM1327538", "GSM1327530" ], "type": "individual", "id": "GDS5030_10" }, { "dataset_id": "GDS5030", "description": "TB 8", "sample_id": [ "GSM1327563", "GSM1327557", "GSM1327535" ], "type": "individual", "id": "GDS5030_11" }, { "dataset_id": "GDS5030", "description": "TB 9", "sample_id": [ "GSM1327553", "GSM1327536", "GSM1327528" ], "type": "individual", "id": "GDS5030_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5030", "version": 1.0, "instances": "27", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5030.tab", "compression": "gz" } ], [ [ "GDS5031.tab" ], { "title": "Early postnatal nerve tissue response to acrylamide: spinal cord", "description": "Analysis of spinal cord from 3 week-old male Wistar pups treated daily with acrylamide (30 mg/kg) for 21 days. Acrylamide is a type-2 alkene monomer with established human neurotoxic effects. Results provide insight into the molecular basis of acrylamide neurotoxicity in developing nervous tissue.", "type": "Expression profiling by array", "pubmed_id": "22197712", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE29004", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS5031", "description": "control", "sample_id": [ "GSM718693", "GSM718694" ], "type": "agent", "id": "GDS5031_1" }, { "dataset_id": "GDS5031", "description": "acrylamide", "sample_id": [ "GSM718695", "GSM718696" ], "type": "agent", "id": "GDS5031_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5031", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5031.tab", "compression": "gz" } ], [ [ "GDS5032.tab" ], { "title": "Early postnatal nerve tissue response to acrylamide: sciatic nerve", "description": "Analysis of sciatic nerve from 3 week-old male Wistar pups treated daily with acrylamide (30 mg/kg) for 21 days. Acrylamide is a type-2 alkene monomer with established human neurotoxic effects. Results provide insight into the molecular basis of acrylamide neurotoxicity in developing nervous tissue.", "type": "Expression profiling by array", "pubmed_id": "22197712", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE29004", "order": "none", "update_date": "Jul 03 2014", "subsets": [ { "dataset_id": "GDS5032", "description": "control", "sample_id": [ "GSM718697", "GSM718698" ], "type": "agent", "id": "GDS5032_1" }, { "dataset_id": "GDS5032", "description": "acrylamide", "sample_id": [ "GSM718699", "GSM718700" ], "type": "agent", "id": "GDS5032_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5032", "version": 1.0, "instances": "4", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5032.tab", "compression": "gz" } ], [ [ "GDS5033.tab" ], { "title": "Diencephalon response to short-term dietary zinc deficiency followed by zinc recovery", "description": "Analysis of diencephalon from Sprague-Dawley males fed a zinc-deficient diet for 10 days then a control diet for 6 days. The zinc recovery restored food intake behaviors and salt preferences. Results provide insight into the molecular effects of short-term zinc deficiency and recovery on the brain.", "type": "Expression profiling by array", "pubmed_id": "22488846", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE31430", "order": "none", "update_date": "Jul 25 2014", "subsets": [ { "dataset_id": "GDS5033", "description": "pair-fed control diet (16 days)", "sample_id": [ "GSM780664", "GSM780665", "GSM780666", "GSM780667" ], "type": "growth protocol", "id": "GDS5033_1" }, { "dataset_id": "GDS5033", "description": "zinc-deficient diet (10 days) followed by control diet (6 days)", "sample_id": [ "GSM780668", "GSM780669", "GSM780670", "GSM780671" ], "type": "growth protocol", "id": "GDS5033_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5033", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5033.tab", "compression": "gz" } ], [ [ "GDS5034.tab" ], { "title": "Polybrominated diphenyl ether effect on the liver", "description": "Analysis of livers collected from postnatal day (PND) 22 and 13-week-old Wistar/Han rats exposed in utero to polybrominated diphenyl ether (PBDE) and directly dosed with PBDE. PBDEs are flame retardants. Results provide insight into the molecular basis of PBDE toxicities.", "type": "Expression profiling by array", "pubmed_id": "22267650", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE32156", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS5034", "description": "PBDE", "sample_id": [ "GSM796783", "GSM796784", "GSM796785", "GSM796786", "GSM796787", "GSM796796", "GSM796797", "GSM796798", "GSM796799", "GSM796800", "GSM796806", "GSM796807", "GSM796808", "GSM796809", "GSM796810" ], "type": "agent", "id": "GDS5034_1" }, { "dataset_id": "GDS5034", "description": "untreated", "sample_id": [ "GSM796781", "GSM796782", "GSM796788", "GSM796789", "GSM796790", "GSM796791", "GSM796792", "GSM796793", "GSM796794", "GSM796795", "GSM796801", "GSM796802", "GSM796803", "GSM796804", "GSM796805" ], "type": "agent", "id": "GDS5034_2" }, { "dataset_id": "GDS5034", "description": "male", "sample_id": [ "GSM796781", "GSM796788", "GSM796789", "GSM796790", "GSM796791", "GSM796783", "GSM796784", "GSM796785", "GSM796786", "GSM796787", "GSM796801", "GSM796802", "GSM796803", "GSM796804", "GSM796805", "GSM796806", "GSM796807", "GSM796808", "GSM796809", "GSM796810" ], "type": "gender", "id": "GDS5034_3" }, { "dataset_id": "GDS5034", "description": "female", "sample_id": [ "GSM796782", "GSM796792", "GSM796793", "GSM796794", "GSM796795", "GSM796796", "GSM796797", "GSM796798", "GSM796799", "GSM796800" ], "type": "gender", "id": "GDS5034_4" }, { "dataset_id": "GDS5034", "description": "22 d", "sample_id": [ "GSM796782", "GSM796792", "GSM796793", "GSM796794", "GSM796795", "GSM796796", "GSM796797", "GSM796798", "GSM796799", "GSM796800", "GSM796781", "GSM796788", "GSM796789", "GSM796790", "GSM796791", "GSM796783", "GSM796784", "GSM796785", "GSM796786", "GSM796787" ], "type": "age", "id": "GDS5034_5" }, { "dataset_id": "GDS5034", "description": "3 wk", "sample_id": [ "GSM796801", "GSM796802", "GSM796803", "GSM796804", "GSM796805", "GSM796806", "GSM796807", "GSM796808", "GSM796809", "GSM796810" ], "type": "age", "id": "GDS5034_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5034", "version": 1.0, "instances": "30", "variables": 24216, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5034.tab", "compression": "gz" } ], [ [ "GDS5035.tab" ], { "title": "Glucocorticoid effect on the male liver", "description": "Analysis of livers from males treated with the synthetic glucocoriticoid dexamethasone. Results compared to those from female livers (GDS5036). Results provide insight into the gender specific actions of glucocoriticoids in the liver.", "type": "Expression profiling by array", "pubmed_id": "20940427", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE24256", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS5035", "description": "PBS", "sample_id": [ "GSM596594", "GSM596595", "GSM596596" ], "type": "agent", "id": "GDS5035_1" }, { "dataset_id": "GDS5035", "description": "dexamethasone", "sample_id": [ "GSM596600", "GSM596601", "GSM596602" ], "type": "agent", "id": "GDS5035_2" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS5035", "version": 1.0, "instances": "6", "variables": 28102, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5035.tab", "compression": "gz" } ], [ [ "GDS5036.tab" ], { "title": "Glucocorticoid effect on the female liver", "description": "Analysis of livers from females treated with the synthetic glucocoriticoid dexamethasone. Results compared to those from male livers (GDS5035). Results provide insight into the gender specific actions of glucocoriticoids in the liver.", "type": "Expression profiling by array", "pubmed_id": "20940427", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE24256", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS5036", "description": "PBS", "sample_id": [ "GSM596597", "GSM596598", "GSM596599" ], "type": "agent", "id": "GDS5036_1" }, { "dataset_id": "GDS5036", "description": "dexamethasone", "sample_id": [ "GSM596603", "GSM596604", "GSM596605" ], "type": "agent", "id": "GDS5036_2" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS5036", "version": 1.0, "instances": "6", "variables": 28102, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5036.tab", "compression": "gz" } ], [ [ "GDS5037.tab" ], { "title": "Severe asthma: bronchial epithelial cell", "description": "Analysis of bronchial epithelial cells from patients with severe asthma. Results provide insight into the molecular mechanisms underlying the development of severe asthma.", "type": "Expression profiling by array", "pubmed_id": "24518246", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "108", "value_type": "transformed count", "reference_series": "GSE43696", "order": "none", "update_date": "Jul 08 2014", "subsets": [ { "dataset_id": "GDS5037", "description": "mild asthma", "sample_id": [ "GSM1068478", "GSM1068479", "GSM1068480", "GSM1068481", "GSM1068482", "GSM1068483", "GSM1068484", "GSM1068485", "GSM1068486", "GSM1068487", "GSM1068488", "GSM1068489", "GSM1068490", "GSM1068491", "GSM1068492", "GSM1068493", "GSM1068494", "GSM1068495", "GSM1068496", "GSM1068497", "GSM1068498", "GSM1068499", "GSM1068500", "GSM1068501", "GSM1068502", "GSM1068503", "GSM1068504", "GSM1068505", "GSM1068506", "GSM1068507", "GSM1068508", "GSM1068509", "GSM1068510", "GSM1068511", "GSM1068512", "GSM1068513", "GSM1068514", "GSM1068515", "GSM1068516", "GSM1068517", "GSM1068518", "GSM1068519", "GSM1068520", "GSM1068521", "GSM1068522", "GSM1068523", "GSM1068524", "GSM1068525", "GSM1068526", "GSM1068527" ], "type": "disease state", "id": "GDS5037_1" }, { "dataset_id": "GDS5037", "description": "control", "sample_id": [ "GSM1068458", "GSM1068459", "GSM1068460", "GSM1068461", "GSM1068462", "GSM1068463", "GSM1068464", "GSM1068465", "GSM1068466", "GSM1068467", "GSM1068468", "GSM1068469", "GSM1068470", "GSM1068471", "GSM1068472", "GSM1068473", "GSM1068474", "GSM1068475", "GSM1068476", "GSM1068477" ], "type": "disease state", "id": "GDS5037_2" }, { "dataset_id": "GDS5037", "description": "severe asthma", "sample_id": [ "GSM1068528", "GSM1068529", "GSM1068530", "GSM1068531", "GSM1068532", "GSM1068533", "GSM1068534", "GSM1068535", "GSM1068536", "GSM1068537", "GSM1068538", "GSM1068539", "GSM1068540", "GSM1068541", "GSM1068542", "GSM1068543", "GSM1068544", "GSM1068545", "GSM1068546", "GSM1068547", "GSM1068548", "GSM1068549", "GSM1068550", "GSM1068551", "GSM1068552", "GSM1068553", "GSM1068554", "GSM1068555", "GSM1068556", "GSM1068557", "GSM1068558", "GSM1068559", "GSM1068560", "GSM1068561", "GSM1068562", "GSM1068563", "GSM1068564", "GSM1068565" ], "type": "disease state", "id": "GDS5037_3" }, { "dataset_id": "GDS5037", "description": "female", "sample_id": [ "GSM1068458", "GSM1068459", "GSM1068460", "GSM1068461", "GSM1068464", "GSM1068468", "GSM1068472", "GSM1068473", "GSM1068474", "GSM1068476", "GSM1068477", "GSM1068478", "GSM1068479", "GSM1068481", "GSM1068482", "GSM1068483", "GSM1068486", "GSM1068487", "GSM1068488", "GSM1068490", "GSM1068491", "GSM1068492", "GSM1068493", "GSM1068494", "GSM1068495", "GSM1068496", "GSM1068498", "GSM1068499", "GSM1068500", "GSM1068502", "GSM1068503", "GSM1068505", "GSM1068506", "GSM1068507", "GSM1068508", "GSM1068510", "GSM1068512", "GSM1068513", "GSM1068514", "GSM1068517", "GSM1068518", "GSM1068520", "GSM1068521", "GSM1068522", "GSM1068524", "GSM1068527", "GSM1068528", "GSM1068531", "GSM1068532", "GSM1068533", "GSM1068535", "GSM1068537", "GSM1068538", "GSM1068539", "GSM1068540", "GSM1068542", "GSM1068543", "GSM1068544", "GSM1068545", "GSM1068546", "GSM1068547", "GSM1068548", "GSM1068549", "GSM1068550", "GSM1068551", "GSM1068552", "GSM1068555", "GSM1068556", "GSM1068557", "GSM1068560", "GSM1068561", "GSM1068562", "GSM1068563", "GSM1068565" ], "type": "gender", "id": "GDS5037_4" }, { "dataset_id": "GDS5037", "description": "male", "sample_id": [ "GSM1068462", "GSM1068463", "GSM1068465", "GSM1068466", "GSM1068467", "GSM1068469", "GSM1068470", "GSM1068471", "GSM1068475", "GSM1068480", "GSM1068484", "GSM1068485", "GSM1068489", "GSM1068497", "GSM1068501", "GSM1068504", "GSM1068509", "GSM1068511", "GSM1068515", "GSM1068516", "GSM1068519", "GSM1068523", "GSM1068525", "GSM1068526", "GSM1068529", "GSM1068530", "GSM1068534", "GSM1068536", "GSM1068541", "GSM1068553", "GSM1068554", "GSM1068558", "GSM1068559", "GSM1068564" ], "type": "gender", "id": "GDS5037_5" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5037", "version": 1.0, "instances": "108", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5037.tab", "compression": "gz" } ], [ [ "GDS504.tab" ], { "title": "Pulmonary arterial hypertension and PBMC", "description": "Analysis of peripheral blood mononuclear (PBMC) cells in patients with pulmonary arterial hypertension (PAH). Altered gene expression patterns in PAH PBMCs may allow disease subgroup identification and prediction of treatment response.", "type": "Expression profiling by array", "pubmed_id": "15215156", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE703", "order": "none", "update_date": "Mar 03 2004", "subsets": [ { "dataset_id": "GDS504", "description": "pulmonary arterial hypertension", "sample_id": [ "GSM12587", "GSM12588", "GSM12589", "GSM12590", "GSM12591", "GSM12592", "GSM12593", "GSM12594", "GSM12595", "GSM12596", "GSM12597", "GSM12598", "GSM12599", "GSM12600" ], "type": "disease state", "id": "GDS504_1" }, { "dataset_id": "GDS504", "description": "normal", "sample_id": [ "GSM12601", "GSM12602", "GSM12603", "GSM12604", "GSM12605", "GSM12606" ], "type": "disease state", "id": "GDS504_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS504", "version": 1.0, "instances": "20", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS504.tab", "compression": "gz" } ], [ [ "GDS5040.tab" ], { "title": "V-ets erythroblastosis virus E26 oncogene homolog 2 knockdown effect on lung cancer cells", "description": "Analysis of H441 lung cancer cells transfected with siRNA targeting V-ets erythroblastosis virus E26 oncogene homolog 2 (ETS2). ETS2 transcription factor is an evolutionarily conserved gene that is deregulated in cancer. Results provide insight into the role of ETS2 in lung cancer.", "type": "Expression profiling by array", "pubmed_id": "23659968", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE43459", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5040", "description": "ETS2 knockdown", "sample_id": [ "GSM1062878", "GSM1062879", "GSM1062880" ], "type": "protocol", "id": "GDS5040_1" }, { "dataset_id": "GDS5040", "description": "control", "sample_id": [ "GSM1062875", "GSM1062876", "GSM1062877" ], "type": "protocol", "id": "GDS5040_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5040", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5040.tab", "compression": "gz" } ], [ [ "GDS5041.tab" ], { "title": "db/db model of obesity-induced type 2 diabetes: neuroretina", "description": "Analysis of neuroretina from 8-week C57BLKsJ-db/db diabetic mice. These leptin-receptor-deficient db/db mice have been shown to exhibit early features of diabetic retinopathy (DR). Results provide insight into the molecular mechanisms underlying early diabetic retinal neurodegeneration.", "type": "Expression profiling by array", "pubmed_id": "24837086", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE55389", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5041", "description": "diabetic", "sample_id": [ "GSM1335284", "GSM1335285", "GSM1335286", "GSM1335287" ], "type": "disease state", "id": "GDS5041_1" }, { "dataset_id": "GDS5041", "description": "lean non-diabetic", "sample_id": [ "GSM1335288", "GSM1335289", "GSM1335290", "GSM1335291" ], "type": "disease state", "id": "GDS5041_2" }, { "dataset_id": "GDS5041", "description": "db/db", "sample_id": [ "GSM1335284", "GSM1335285", "GSM1335286", "GSM1335287" ], "type": "genotype/variation", "id": "GDS5041_3" }, { "dataset_id": "GDS5041", "description": "db/+", "sample_id": [ "GSM1335288", "GSM1335289", "GSM1335290", "GSM1335291" ], "type": "genotype/variation", "id": "GDS5041_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5041", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5041.tab", "compression": "gz" } ], [ [ "GDS5045.tab" ], { "title": "Prechondrocytes", "description": "Analysis of LCM-isolated prechondrocytes in chondrogenic condensations and total limb cells at week 6 of embryogenesis. Results provide insight into molecular mechanisms distinguishing prechondrocytes from other cell lineages in developing limbs.", "type": "Expression profiling by array", "pubmed_id": "24371811", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE51812", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5045", "description": "chondrocyte condensation", "sample_id": [ "GSM1253156", "GSM1253157", "GSM1253158", "GSM1253159", "GSM1253160", "GSM1253161" ], "type": "cell type", "id": "GDS5045_1" }, { "dataset_id": "GDS5045", "description": "remaining limb cells", "sample_id": [ "GSM1253162", "GSM1253163", "GSM1253164", "GSM1253165", "GSM1253166", "GSM1253167" ], "type": "cell type", "id": "GDS5045_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5045", "version": 1.0, "instances": "12", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5045.tab", "compression": "gz" } ], [ [ "GDS5046.tab" ], { "title": "Prechondrocyte differentiation", "description": "Analysis of LCM-isolated prechondrocytes in chondrogenic condensations at week 6 of embryogenesis and articular chondrocytes at week 17 of development. Results provide insight into molecular markers during the process of prechondrocyte maturation.", "type": "Expression profiling by array", "pubmed_id": "24371811", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE51812", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5046", "description": "6 weeks", "sample_id": [ "GSM1253156", "GSM1253157", "GSM1253158", "GSM1253159", "GSM1253160", "GSM1253161" ], "type": "development stage", "id": "GDS5046_1" }, { "dataset_id": "GDS5046", "description": "17 weeks", "sample_id": [ "GSM1253168", "GSM1253169", "GSM1253170" ], "type": "development stage", "id": "GDS5046_2" }, { "dataset_id": "GDS5046", "description": "chondrocyte condensation", "sample_id": [ "GSM1253156", "GSM1253157", "GSM1253158", "GSM1253159", "GSM1253160", "GSM1253161" ], "type": "cell type", "id": "GDS5046_3" }, { "dataset_id": "GDS5046", "description": "articular chondrocyte", "sample_id": [ "GSM1253168", "GSM1253169", "GSM1253170" ], "type": "cell type", "id": "GDS5046_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5046", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5046.tab", "compression": "gz" } ], [ [ "GDS5047.tab" ], { "title": "Cocaine abuse effect on the midbrain", "description": "Analysis of postmortem midbrain specimens from individuals who died from cocaine abuse. Midbrain dopamine-synthesizing neurons play a important role in the addiction process. Results provide insight into the molecular pathophysiological changes in the midbrain associated with cocaine abuse.", "type": "Expression profiling by array", "pubmed_id": "24642598", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "60", "value_type": "count", "reference_series": "GSE54839", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5047", "description": "cocaine", "sample_id": [ "GSM1324902", "GSM1324903", "GSM1324904", "GSM1324908", "GSM1324909", "GSM1324910", "GSM1324914", "GSM1324915", "GSM1324916", "GSM1324920", "GSM1324921", "GSM1324922", "GSM1324926", "GSM1324927", "GSM1324928", "GSM1324932", "GSM1324933", "GSM1324934", "GSM1324938", "GSM1324939", "GSM1324940", "GSM1324944", "GSM1324945", "GSM1324946", "GSM1324950", "GSM1324951", "GSM1324952", "GSM1324896", "GSM1324897", "GSM1324898" ], "type": "agent", "id": "GDS5047_1" }, { "dataset_id": "GDS5047", "description": "control", "sample_id": [ "GSM1324905", "GSM1324906", "GSM1324907", "GSM1324911", "GSM1324912", "GSM1324913", "GSM1324917", "GSM1324918", "GSM1324919", "GSM1324923", "GSM1324924", "GSM1324925", "GSM1324929", "GSM1324930", "GSM1324931", "GSM1324935", "GSM1324936", "GSM1324937", "GSM1324941", "GSM1324942", "GSM1324943", "GSM1324947", "GSM1324948", "GSM1324949", "GSM1324893", "GSM1324894", "GSM1324895", "GSM1324899", "GSM1324900", "GSM1324901" ], "type": "agent", "id": "GDS5047_2" }, { "dataset_id": "GDS5047", "description": "7", "sample_id": [ "GSM1324893", "GSM1324894", "GSM1324895" ], "type": "individual", "id": "GDS5047_3" }, { "dataset_id": "GDS5047", "description": "8", "sample_id": [ "GSM1324896", "GSM1324897", "GSM1324898" ], "type": "individual", "id": "GDS5047_4" }, { "dataset_id": "GDS5047", "description": "9", "sample_id": [ "GSM1324899", "GSM1324900", "GSM1324901" ], "type": "individual", "id": "GDS5047_5" }, { "dataset_id": "GDS5047", "description": "10", "sample_id": [ "GSM1324902", "GSM1324903", "GSM1324904" ], "type": "individual", "id": "GDS5047_6" }, { "dataset_id": "GDS5047", "description": "11", "sample_id": [ "GSM1324905", "GSM1324906", "GSM1324907" ], "type": "individual", "id": "GDS5047_7" }, { "dataset_id": "GDS5047", "description": "12", "sample_id": [ "GSM1324908", "GSM1324909", "GSM1324910" ], "type": "individual", "id": "GDS5047_8" }, { "dataset_id": "GDS5047", "description": "13", "sample_id": [ "GSM1324911", "GSM1324912", "GSM1324913" ], "type": "individual", "id": "GDS5047_9" }, { "dataset_id": "GDS5047", "description": "14", "sample_id": [ "GSM1324914", "GSM1324915", "GSM1324916" ], "type": "individual", "id": "GDS5047_10" }, { "dataset_id": "GDS5047", "description": "15", "sample_id": [ "GSM1324917", "GSM1324918", "GSM1324919" ], "type": "individual", "id": "GDS5047_11" }, { "dataset_id": "GDS5047", "description": "16", "sample_id": [ "GSM1324920", "GSM1324921", "GSM1324922" ], "type": "individual", "id": "GDS5047_12" }, { "dataset_id": "GDS5047", "description": "37", "sample_id": [ "GSM1324923", "GSM1324924", "GSM1324925" ], "type": "individual", "id": "GDS5047_13" }, { "dataset_id": "GDS5047", "description": "38", "sample_id": [ "GSM1324926", "GSM1324927", "GSM1324928" ], "type": "individual", "id": "GDS5047_14" }, { "dataset_id": "GDS5047", "description": "41", "sample_id": [ "GSM1324929", "GSM1324930", "GSM1324931" ], "type": "individual", "id": "GDS5047_15" }, { "dataset_id": "GDS5047", "description": "50", "sample_id": [ "GSM1324935", "GSM1324936", "GSM1324937" ], "type": "individual", "id": "GDS5047_16" }, { "dataset_id": "GDS5047", "description": "51", "sample_id": [ "GSM1324938", "GSM1324939", "GSM1324940" ], "type": "individual", "id": "GDS5047_17" }, { "dataset_id": "GDS5047", "description": "52", "sample_id": [ "GSM1324941", "GSM1324942", "GSM1324943" ], "type": "individual", "id": "GDS5047_18" }, { "dataset_id": "GDS5047", "description": "53", "sample_id": [ "GSM1324944", "GSM1324945", "GSM1324946" ], "type": "individual", "id": "GDS5047_19" }, { "dataset_id": "GDS5047", "description": "56", "sample_id": [ "GSM1324947", "GSM1324948", "GSM1324949" ], "type": "individual", "id": "GDS5047_20" }, { "dataset_id": "GDS5047", "description": "57", "sample_id": [ "GSM1324950", "GSM1324951", "GSM1324952" ], "type": "individual", "id": "GDS5047_21" }, { "dataset_id": "GDS5047", "description": "42", "sample_id": [ "GSM1324932", "GSM1324933", "GSM1324934" ], "type": "individual", "id": "GDS5047_22" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5047", "version": 1.0, "instances": "60", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5047.tab", "compression": "gz" } ], [ [ "GDS5048.tab" ], { "title": "High Mobility Group AT-hook Protein 2 deficiency effect on the embryonic lung", "description": "Analysis of lungs from embryonic day 18.5 C57BL/6 mutants deficient for the High Mobility Group AT-hook Protein 2 (HMGA2). High-mobility-group proteins are abundant non-histone chromatin-associated proteins. Results provide insight into the role of HMGA2 in lung development.", "type": "Expression profiling by array", "pubmed_id": "24661562", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55340", "order": "none", "update_date": "Jul 11 2014", "subsets": [ { "dataset_id": "GDS5048", "description": "wild type", "sample_id": [ "GSM1334375", "GSM1334376" ], "type": "genotype/variation", "id": "GDS5048_1" }, { "dataset_id": "GDS5048", "description": "HMGA2 null", "sample_id": [ "GSM1334377", "GSM1334378" ], "type": "genotype/variation", "id": "GDS5048_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5048", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5048.tab", "compression": "gz" } ], [ [ "GDS5049.tab" ], { "title": "Chronic ethanol ingestion effect on lung alveolar type 2 cell", "description": "Analysis of lung alveolar type 2 cells from Sprague-Dawley males following 6 weeks of chronic ingestion of alcohol. The lungs can be irreversibly damaged from chronic alcohol consumption. Results provide insight into the molecular changes in the lung associated with chronic alcohol consumption.", "type": "Expression profiling by array", "pubmed_id": "24682449", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE55243", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5049", "description": "control", "sample_id": [ "GSM1332324", "GSM1332325", "GSM1332326", "GSM1332327" ], "type": "agent", "id": "GDS5049_1" }, { "dataset_id": "GDS5049", "description": "alcohol", "sample_id": [ "GSM1332328", "GSM1332329", "GSM1332330" ], "type": "agent", "id": "GDS5049_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS5049", "version": 1.0, "instances": "7", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5049.tab", "compression": "gz" } ], [ [ "GDS505.tab" ], { "title": "Renal clear cell carcinoma (HG-U133A)", "description": "Investigation into mechanisms of renal clear cell carcinogenesis (RCC). Comparison of renal clear cell tumor tissue and adjacent normal tissue isolated from the same surgical samples.", "type": "Expression profiling by array", "pubmed_id": "14641932", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE781", "order": "none", "update_date": "Mar 04 2004", "subsets": [ { "dataset_id": "GDS505", "description": "RCC", "sample_id": [ "GSM11814", "GSM11830", "GSM12067", "GSM12079", "GSM12100", "GSM12105", "GSM12270", "GSM12298", "GSM12399" ], "type": "disease state", "id": "GDS505_1" }, { "dataset_id": "GDS505", "description": "normal", "sample_id": [ "GSM11805", "GSM11823", "GSM12075", "GSM12098", "GSM12268", "GSM12283", "GSM12300", "GSM12444" ], "type": "disease state", "id": "GDS505_2" }, { "dataset_id": "GDS505", "description": "035", "sample_id": [ "GSM11805", "GSM11814" ], "type": "individual", "id": "GDS505_3" }, { "dataset_id": "GDS505", "description": "023", "sample_id": [ "GSM11823", "GSM11830" ], "type": "individual", "id": "GDS505_4" }, { "dataset_id": "GDS505", "description": "001", "sample_id": [ "GSM12067", "GSM12075" ], "type": "individual", "id": "GDS505_5" }, { "dataset_id": "GDS505", "description": "005", "sample_id": [ "GSM12079", "GSM12098" ], "type": "individual", "id": "GDS505_6" }, { "dataset_id": "GDS505", "description": "011", "sample_id": [ "GSM12100" ], "type": "individual", "id": "GDS505_7" }, { "dataset_id": "GDS505", "description": "032", "sample_id": [ "GSM12105" ], "type": "individual", "id": "GDS505_8" }, { "dataset_id": "GDS505", "description": "1", "sample_id": [ "GSM12268" ], "type": "individual", "id": "GDS505_9" }, { "dataset_id": "GDS505", "description": "2", "sample_id": [ "GSM12270", "GSM12283" ], "type": "individual", "id": "GDS505_10" }, { "dataset_id": "GDS505", "description": "3", "sample_id": [ "GSM12298", "GSM12300" ], "type": "individual", "id": "GDS505_11" }, { "dataset_id": "GDS505", "description": "4", "sample_id": [ "GSM12399", "GSM12444" ], "type": "individual", "id": "GDS505_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS505", "version": 1.0, "instances": "17", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS505.tab", "compression": "gz" } ], [ [ "GDS5050.tab" ], { "title": "Pristane-induced arthritis effect on AIRmax high acute inflammation model: footpad", "description": "Analysis of footpad from outbred animals with high (AIRmax) acute inflammation following two injections of pristine at 60-day intervals. Arthritis development was examined twice weekly for 160 days. Results provide insight into molecular mechanisms underlying arthritis induction and progression.", "type": "Expression profiling by array", "pubmed_id": "24505471", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE51516", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5050", "description": "control", "sample_id": [ "GSM1246734", "GSM1246735", "GSM1246736", "GSM1246737" ], "type": "protocol", "id": "GDS5050_1" }, { "dataset_id": "GDS5050", "description": "pristane injections", "sample_id": [ "GSM1246738", "GSM1246739", "GSM1246740", "GSM1246741" ], "type": "protocol", "id": "GDS5050_2" }, { "dataset_id": "GDS5050", "description": "male", "sample_id": [ "GSM1246734", "GSM1246735", "GSM1246738", "GSM1246739" ], "type": "gender", "id": "GDS5050_3" }, { "dataset_id": "GDS5050", "description": "female", "sample_id": [ "GSM1246736", "GSM1246737", "GSM1246740", "GSM1246741" ], "type": "gender", "id": "GDS5050_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5050", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5050.tab", "compression": "gz" } ], [ [ "GDS5051.tab" ], { "title": "Pristane-induced arthritis effect on AIRmin low acute inflammation model: footpad", "description": "Analysis of footpad from outbred animals with low (AIRmin) acute inflammation following two injections of pristine at 60-day intervals. Arthritis development was examined twice weekly for 160 days. Results provide insight into molecular mechanisms underlying arthritis induction and progression.", "type": "Expression profiling by array", "pubmed_id": "24505471", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE51516", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5051", "description": "control", "sample_id": [ "GSM1246742", "GSM1246743", "GSM1246744", "GSM1246745" ], "type": "protocol", "id": "GDS5051_1" }, { "dataset_id": "GDS5051", "description": "pristane injections", "sample_id": [ "GSM1246746", "GSM1246747", "GSM1246748", "GSM1246749" ], "type": "protocol", "id": "GDS5051_2" }, { "dataset_id": "GDS5051", "description": "male", "sample_id": [ "GSM1246742", "GSM1246743", "GSM1246746", "GSM1246747" ], "type": "gender", "id": "GDS5051_3" }, { "dataset_id": "GDS5051", "description": "female", "sample_id": [ "GSM1246744", "GSM1246745", "GSM1246748", "GSM1246749" ], "type": "gender", "id": "GDS5051_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5051", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5051.tab", "compression": "gz" } ], [ [ "GDS5052.tab" ], { "title": "Pristane-induced arthritis effect on AIRmax and AIRmin acute inflammation model: footpad", "description": "Analysis of footpad from animals with high (AIRmax) or low (AIRmin) acute inflammation following 2 injections of pristine at 60-day intervals. Arthritis development was examined twice weekly for 160 days. Results provide insight into molecular mechanisms distinguishing the AIRmax and AIRmin models.", "type": "Expression profiling by array", "pubmed_id": "24505471", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE51516", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5052", "description": "AIRmax (high inflammation)", "sample_id": [ "GSM1246738", "GSM1246739", "GSM1246740", "GSM1246741" ], "type": "genotype/variation", "id": "GDS5052_1" }, { "dataset_id": "GDS5052", "description": "AIRmin (low inflammation)", "sample_id": [ "GSM1246746", "GSM1246747", "GSM1246748", "GSM1246749" ], "type": "genotype/variation", "id": "GDS5052_2" }, { "dataset_id": "GDS5052", "description": "male", "sample_id": [ "GSM1246738", "GSM1246739", "GSM1246746", "GSM1246747" ], "type": "gender", "id": "GDS5052_3" }, { "dataset_id": "GDS5052", "description": "female", "sample_id": [ "GSM1246740", "GSM1246741", "GSM1246748", "GSM1246749" ], "type": "gender", "id": "GDS5052_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5052", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5052.tab", "compression": "gz" } ], [ [ "GDS5053.tab" ], { "title": "Diabetes and Obesity Regulated gene abalation effect on skeletal muscle", "description": "Analysis of quadriceps from a muscle-specific, Diabetes and Obesity Regulated gene (DOR; Tp53inp2) knockout line (SKM-KO). Deletion of DOR results in muscle hypertrophy. Results provide insight into the functional role of DOR in skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "24713655", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE54917", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5053", "description": "SKM-KO", "sample_id": [ "GSM1326546", "GSM1326547", "GSM1326548" ], "type": "genotype/variation", "id": "GDS5053_1" }, { "dataset_id": "GDS5053", "description": "control", "sample_id": [ "GSM1326543", "GSM1326544", "GSM1326545" ], "type": "genotype/variation", "id": "GDS5053_2" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5053", "version": 1.0, "instances": "6", "variables": 31812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5053.tab", "compression": "gz" } ], [ [ "GDS5054.tab" ], { "title": "Diabetes and Obesity Regulated gene gain-of-function effect on skeletal muscle", "description": "Analysis of quadriceps from a muscle-specific, Diabetes and Obesity Regulated gene (DOR; also named Tp53inp2) overexpression line (SKM-Tg). DOR gain of function causes a reduction in muscle mass. Results provide insight into the functional role of DOR in skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "24713655", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE54917", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5054", "description": "SKM-Tg", "sample_id": [ "GSM1326552", "GSM1326553", "GSM1326554", "GSM1326555" ], "type": "genotype/variation", "id": "GDS5054_1" }, { "dataset_id": "GDS5054", "description": "wild type", "sample_id": [ "GSM1326549", "GSM1326550", "GSM1326551" ], "type": "genotype/variation", "id": "GDS5054_2" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5054", "version": 1.0, "instances": "7", "variables": 31812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5054.tab", "compression": "gz" } ], [ [ "GDS5055.tab" ], { "title": "Histone demethylase KDM1A deficiency effect on 3T3-L1 preadipocytes: time course", "description": "Analysis of undifferentiated 3T3-L1 preadipocytes up to 48hr after siRNA-mediated depletion of Histone demethylase Kdm1a. Knockdown of kdm1a in 3T3-L1 preadipocytes decreases adipogenesis. Results provide insight into the role of kdm1a in adipogenesis.", "type": "Expression profiling by array", "pubmed_id": "23595969", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE25423", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5055", "description": "siKdm1a (siLSD1) transfected", "sample_id": [ "GSM624123", "GSM624124", "GSM624128", "GSM624129", "GSM624130" ], "type": "protocol", "id": "GDS5055_1" }, { "dataset_id": "GDS5055", "description": "control", "sample_id": [ "GSM624121", "GSM624122", "GSM624125", "GSM624126", "GSM624127" ], "type": "protocol", "id": "GDS5055_2" }, { "dataset_id": "GDS5055", "description": "24 hours", "sample_id": [ "GSM624121", "GSM624122", "GSM624123", "GSM624124" ], "type": "time", "id": "GDS5055_3" }, { "dataset_id": "GDS5055", "description": "48 hours", "sample_id": [ "GSM624125", "GSM624126", "GSM624127", "GSM624128", "GSM624129", "GSM624130" ], "type": "time", "id": "GDS5055_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5055", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5055.tab", "compression": "gz" } ], [ [ "GDS5056.tab" ], { "title": "Morbidly obese and non-obese individuals: adipose stem cells", "description": "Analysis of adipose stem cells (ASC) from subcutaneous white adipose tissue (WAT) of morbidly obese and non-obese individuals. WAT serves as a reservoir for ASCs for cell renewal and repair. Results provide insight into molecular mechanisms by which obesity affects subcutaneous WAT stem cells.", "type": "Expression profiling by array", "pubmed_id": "24040759", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE48964", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5056", "description": "morbidly obese", "sample_id": [ "GSM1187673", "GSM1187674", "GSM1187675" ], "type": "disease state", "id": "GDS5056_1" }, { "dataset_id": "GDS5056", "description": "non-obese", "sample_id": [ "GSM1187676", "GSM1187677", "GSM1187678" ], "type": "disease state", "id": "GDS5056_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5056", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5056.tab", "compression": "gz" } ], [ [ "GDS5057.tab" ], { "title": "Mepenzolate bromide effect on lung: time course", "description": "Analysis of lung up to 25 hrs after a single, intratracheal administration of mepenzolate (MEP). MEP, a muscarinic receptor antagonist, decreases elastase-induced airspace enlargement. Results provide insight into molecular mechanisms underlying the beneficial effect of MEP on airspace enlargement.", "type": "Expression profiling by array", "pubmed_id": "24189798", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE50836", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5057", "description": "mepenzolate", "sample_id": [ "GSM1230986", "GSM1230987", "GSM1230988", "GSM1230989" ], "type": "agent", "id": "GDS5057_1" }, { "dataset_id": "GDS5057", "description": "vehicle", "sample_id": [ "GSM1230990", "GSM1230991", "GSM1230992", "GSM1230993" ], "type": "agent", "id": "GDS5057_2" }, { "dataset_id": "GDS5057", "description": "7 hours", "sample_id": [ "GSM1230993", "GSM1230992", "GSM1230989", "GSM1230988" ], "type": "time", "id": "GDS5057_3" }, { "dataset_id": "GDS5057", "description": "25 hours", "sample_id": [ "GSM1230991", "GSM1230990", "GSM1230987", "GSM1230986" ], "type": "time", "id": "GDS5057_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5057", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5057.tab", "compression": "gz" } ], [ [ "GDS5058.tab" ], { "title": "Peripheral blood mononuclear cells response to Lassa Virus and Mopeia/Lassa reassortant 29: time course", "description": "Analysis of PBMCs exposed in vitro to LASV or ML29 viruses and collected up to 24 hrs post-exposure. The ML29 vaccine candidate is derived from Lassa and Mopeia viruses and protects against Lassa fever disease. Results provide insight into LASV-induced pathology and mechanisms of attenuation.", "type": "Expression profiling by array", "pubmed_id": "24069471", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE41300", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5058", "description": "Lassa virus exposed", "sample_id": [ "GSM1014093", "GSM1014102", "GSM1014111", "GSM1014091", "GSM1014100", "GSM1014109", "GSM1014092", "GSM1014101", "GSM1014110" ], "type": "protocol", "id": "GDS5058_1" }, { "dataset_id": "GDS5058", "description": "Mopeia/Lassa reassortant 29 exposed", "sample_id": [ "GSM1014096", "GSM1014105", "GSM1014114", "GSM1014094", "GSM1014103", "GSM1014112", "GSM1014095", "GSM1014104", "GSM1014113" ], "type": "protocol", "id": "GDS5058_2" }, { "dataset_id": "GDS5058", "description": "control unexposed", "sample_id": [ "GSM1014090", "GSM1014099", "GSM1014108", "GSM1014088", "GSM1014097", "GSM1014106", "GSM1014089", "GSM1014098", "GSM1014107" ], "type": "protocol", "id": "GDS5058_3" }, { "dataset_id": "GDS5058", "description": "hour 4", "sample_id": [ "GSM1014106", "GSM1014112", "GSM1014109", "GSM1014097", "GSM1014103", "GSM1014100", "GSM1014088", "GSM1014094", "GSM1014091" ], "type": "dose", "id": "GDS5058_4" }, { "dataset_id": "GDS5058", "description": "hour 8", "sample_id": [ "GSM1014107", "GSM1014113", "GSM1014110", "GSM1014098", "GSM1014104", "GSM1014101", "GSM1014089", "GSM1014095", "GSM1014092" ], "type": "dose", "id": "GDS5058_5" }, { "dataset_id": "GDS5058", "description": "hour 24", "sample_id": [ "GSM1014108", "GSM1014114", "GSM1014111", "GSM1014099", "GSM1014105", "GSM1014102", "GSM1014090", "GSM1014096", "GSM1014093" ], "type": "dose", "id": "GDS5058_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5058", "version": 1.0, "instances": "27", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5058.tab", "compression": "gz" } ], [ [ "GDS5059.tab" ], { "title": "Acute myeloid leukemia fusion oncogenes in vitro effect on primary CD34+ cells: time course", "description": "Analysis of CD34+ cells nucleofected (6h) or transduced (3d, 8d) with AML leukemia fusion oncogenes: AML1-ETO, MLL-AF9, PML-RARA or NUP98-HOXA9. Results provide insight into molecular mechanisms of fusion oncogene-driven leukemogenesis and early temporal patterns of gene deregulation in AML.", "type": "Expression profiling by array", "pubmed_id": "20805992", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "transformed count", "reference_series": "GSE57194", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5059", "description": "AML1-ETO nucleofected", "sample_id": [ "GSM1376955", "GSM1376956" ], "type": "protocol", "id": "GDS5059_1" }, { "dataset_id": "GDS5059", "description": "MLL-AF9 nucleofected", "sample_id": [ "GSM1376949", "GSM1376950" ], "type": "protocol", "id": "GDS5059_2" }, { "dataset_id": "GDS5059", "description": "NUP98-HOXA9 nucleofected", "sample_id": [ "GSM1376967", "GSM1376968" ], "type": "protocol", "id": "GDS5059_3" }, { "dataset_id": "GDS5059", "description": "PML-RARA nucleofected", "sample_id": [ "GSM1376961", "GSM1376962" ], "type": "protocol", "id": "GDS5059_4" }, { "dataset_id": "GDS5059", "description": "empty plasmid vector (control)", "sample_id": [ "GSM1376943", "GSM1376944" ], "type": "protocol", "id": "GDS5059_5" }, { "dataset_id": "GDS5059", "description": "AML1-ETO transduced", "sample_id": [ "GSM1376957", "GSM1376958", "GSM1376959", "GSM1376960" ], "type": "protocol", "id": "GDS5059_6" }, { "dataset_id": "GDS5059", "description": "MLL-AF9 transduced", "sample_id": [ "GSM1376951", "GSM1376952", "GSM1376953", "GSM1376954" ], "type": "protocol", "id": "GDS5059_7" }, { "dataset_id": "GDS5059", "description": "NUP98-HOXA9 transduced", "sample_id": [ "GSM1376969", "GSM1376970", "GSM1376971", "GSM1376972" ], "type": "protocol", "id": "GDS5059_8" }, { "dataset_id": "GDS5059", "description": "PML-RARA transduced", "sample_id": [ "GSM1376963", "GSM1376964", "GSM1376965", "GSM1376966" ], "type": "protocol", "id": "GDS5059_9" }, { "dataset_id": "GDS5059", "description": "empty retroviral vector (control)", "sample_id": [ "GSM1376945", "GSM1376946", "GSM1376947", "GSM1376948" ], "type": "protocol", "id": "GDS5059_10" }, { "dataset_id": "GDS5059", "description": "6 hours", "sample_id": [ "GSM1376943", "GSM1376944", "GSM1376949", "GSM1376950", "GSM1376955", "GSM1376956", "GSM1376961", "GSM1376962", "GSM1376967", "GSM1376968" ], "type": "time", "id": "GDS5059_11" }, { "dataset_id": "GDS5059", "description": "72 hours", "sample_id": [ "GSM1376945", "GSM1376946", "GSM1376951", "GSM1376952", "GSM1376957", "GSM1376958", "GSM1376963", "GSM1376964", "GSM1376969", "GSM1376970" ], "type": "time", "id": "GDS5059_12" }, { "dataset_id": "GDS5059", "description": "192 hours", "sample_id": [ "GSM1376947", "GSM1376948", "GSM1376953", "GSM1376954", "GSM1376959", "GSM1376960", "GSM1376965", "GSM1376966", "GSM1376971", "GSM1376972" ], "type": "time", "id": "GDS5059_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5059", "version": 1.0, "instances": "30", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5059.tab", "compression": "gz" } ], [ [ "GDS5060.tab" ], { "title": "Zymosan-induced inflammation effect on peritoneal monocyte and macrophage populations: time course", "description": "Analysis of purified peritoneal monocyte and macrophage (M\u03c6) populations from the peritoneal cavity of C57BL/6 females up to 168 hrs after the induction of inflammation with IP administration of zymosan. Results provide insight into molecular mechanisms involved in the resolution of inflammation.", "type": "Expression profiling by array", "pubmed_id": "24762537", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE28621", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5060", "description": "monocyte, na\u00efve bone marrow", "sample_id": [ "GSM709397", "GSM709398", "GSM709399" ], "type": "cell type", "id": "GDS5060_1" }, { "dataset_id": "GDS5060", "description": "monocyte, inflammatory Ly-6B+, Ly-6G", "sample_id": [ "GSM709385", "GSM709386", "GSM709387" ], "type": "cell type", "id": "GDS5060_2" }, { "dataset_id": "GDS5060", "description": "monocyte/macrophage, inflammatory Ly-6B+/low, Ly-6G-", "sample_id": [ "GSM709391", "GSM709392", "GSM709393" ], "type": "cell type", "id": "GDS5060_3" }, { "dataset_id": "GDS5060", "description": "macrophage, inflammatory F4/80+, CD11b+", "sample_id": [ "GSM709388", "GSM709389", "GSM709390" ], "type": "cell type", "id": "GDS5060_4" }, { "dataset_id": "GDS5060", "description": "macrophage, inflammatory F4/80(med-high), Ly-6B+", "sample_id": [ "GSM709379", "GSM709380", "GSM709381" ], "type": "cell type", "id": "GDS5060_5" }, { "dataset_id": "GDS5060", "description": "macrophage, inflammatory F4/80(high), Ly-6B-", "sample_id": [ "GSM709382", "GSM709383", "GSM709384" ], "type": "cell type", "id": "GDS5060_6" }, { "dataset_id": "GDS5060", "description": "macrophage, na\u00efve tissue resident", "sample_id": [ "GSM709394", "GSM709395", "GSM709396" ], "type": "cell type", "id": "GDS5060_7" }, { "dataset_id": "GDS5060", "description": "uninduced", "sample_id": [ "GSM709394", "GSM709395", "GSM709396", "GSM709397", "GSM709398", "GSM709399" ], "type": "protocol", "id": "GDS5060_8" }, { "dataset_id": "GDS5060", "description": "zymosan-induced peritonitis", "sample_id": [ "GSM709379", "GSM709380", "GSM709381", "GSM709382", "GSM709383", "GSM709384", "GSM709385", "GSM709386", "GSM709387", "GSM709388", "GSM709389", "GSM709390", "GSM709391", "GSM709392", "GSM709393" ], "type": "protocol", "id": "GDS5060_9" }, { "dataset_id": "GDS5060", "description": "control", "sample_id": [ "GSM709394", "GSM709395", "GSM709396", "GSM709397", "GSM709398", "GSM709399" ], "type": "time", "id": "GDS5060_10" }, { "dataset_id": "GDS5060", "description": "4 hours", "sample_id": [ "GSM709385", "GSM709386", "GSM709387" ], "type": "time", "id": "GDS5060_11" }, { "dataset_id": "GDS5060", "description": "18 hours", "sample_id": [ "GSM709391", "GSM709392", "GSM709393" ], "type": "time", "id": "GDS5060_12" }, { "dataset_id": "GDS5060", "description": "72 hours", "sample_id": [ "GSM709388", "GSM709389", "GSM709390" ], "type": "time", "id": "GDS5060_13" }, { "dataset_id": "GDS5060", "description": "168 hours", "sample_id": [ "GSM709379", "GSM709380", "GSM709381", "GSM709382", "GSM709383", "GSM709384" ], "type": "time", "id": "GDS5060_14" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5060", "version": 1.0, "instances": "21", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5060.tab", "compression": "gz" } ], [ [ "GDS5061.tab" ], { "title": "Conventional cigarette or modified-risk tobacco product smoke effect on nasal respiratory epithelium: dose response", "description": "Analysis of nasal epithelia from males that were nose-only exposed for 28 days to smoke from reference cigarette 3R4F at doses up to 23ug nicotine/l or from a modified risk tobacco product (MRTP) at a dose of 23ug nicotine/l. Results provide insight into the reduced biological activity of MRTP.", "type": "Expression profiling by array", "pubmed_id": "24632068", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE50254", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5061", "description": "fresh air", "sample_id": [ "GSM1217156", "GSM1217157", "GSM1217158", "GSM1217159", "GSM1217160" ], "type": "agent", "id": "GDS5061_1" }, { "dataset_id": "GDS5061", "description": "modified risk pMRTP smoke", "sample_id": [ "GSM1217161", "GSM1217162", "GSM1217163", "GSM1217164", "GSM1217165" ], "type": "agent", "id": "GDS5061_2" }, { "dataset_id": "GDS5061", "description": "conventional 3R4F smoke", "sample_id": [ "GSM1217166", "GSM1217167", "GSM1217168", "GSM1217169", "GSM1217170", "GSM1217171", "GSM1217172", "GSM1217173", "GSM1217174", "GSM1217175", "GSM1217176", "GSM1217177", "GSM1217178", "GSM1217179", "GSM1217180" ], "type": "agent", "id": "GDS5061_3" }, { "dataset_id": "GDS5061", "description": "control", "sample_id": [ "GSM1217156", "GSM1217157", "GSM1217158", "GSM1217159", "GSM1217160" ], "type": "dose", "id": "GDS5061_4" }, { "dataset_id": "GDS5061", "description": "8 \u00b5g nicotine/l", "sample_id": [ "GSM1217171", "GSM1217172", "GSM1217173", "GSM1217174", "GSM1217175" ], "type": "dose", "id": "GDS5061_5" }, { "dataset_id": "GDS5061", "description": "15 \u00b5g nicotine/l", "sample_id": [ "GSM1217166", "GSM1217167", "GSM1217168", "GSM1217169", "GSM1217170" ], "type": "dose", "id": "GDS5061_6" }, { "dataset_id": "GDS5061", "description": "23 \u00b5g nicotine/l", "sample_id": [ "GSM1217161", "GSM1217162", "GSM1217163", "GSM1217164", "GSM1217165", "GSM1217176", "GSM1217177", "GSM1217178", "GSM1217179", "GSM1217180" ], "type": "dose", "id": "GDS5061_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5061", "version": 1.0, "instances": "25", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5061.tab", "compression": "gz" } ], [ [ "GDS5062.tab" ], { "title": "Conventional cigarette or modified-risk tobacco product smoke effect on lung parenchyma: dose response", "description": "Analysis of left lung parenchyma from males that were nose-only exposed for 28 days to smoke from reference cigarette 3R4F at doses up to 23ug nicotine/l or from a modified risk tobacco product (MRTP) at a dose of 23ug nicotine/l. Results provide insight into the reduced biological activity of MRTP.", "type": "Expression profiling by array", "pubmed_id": "24632068", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE50254", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5062", "description": "fresh air", "sample_id": [ "GSM1217181", "GSM1217182", "GSM1217183", "GSM1217184", "GSM1217185" ], "type": "agent", "id": "GDS5062_1" }, { "dataset_id": "GDS5062", "description": "modified risk pMRTP smoke", "sample_id": [ "GSM1217186", "GSM1217187", "GSM1217188", "GSM1217189", "GSM1217190" ], "type": "agent", "id": "GDS5062_2" }, { "dataset_id": "GDS5062", "description": "conventional 3R4F smoke", "sample_id": [ "GSM1217191", "GSM1217192", "GSM1217193", "GSM1217194", "GSM1217195", "GSM1217196", "GSM1217197", "GSM1217198", "GSM1217199", "GSM1217200", "GSM1217201", "GSM1217202", "GSM1217203", "GSM1217204", "GSM1217205" ], "type": "agent", "id": "GDS5062_3" }, { "dataset_id": "GDS5062", "description": "control", "sample_id": [ "GSM1217181", "GSM1217182", "GSM1217183", "GSM1217184", "GSM1217185" ], "type": "dose", "id": "GDS5062_4" }, { "dataset_id": "GDS5062", "description": "8 \u00b5g nicotine/l", "sample_id": [ "GSM1217196", "GSM1217197", "GSM1217198", "GSM1217199", "GSM1217200" ], "type": "dose", "id": "GDS5062_5" }, { "dataset_id": "GDS5062", "description": "15 \u00b5g nicotine/l", "sample_id": [ "GSM1217191", "GSM1217192", "GSM1217193", "GSM1217194", "GSM1217195" ], "type": "dose", "id": "GDS5062_6" }, { "dataset_id": "GDS5062", "description": "23 \u00b5g nicotine/l", "sample_id": [ "GSM1217186", "GSM1217187", "GSM1217188", "GSM1217189", "GSM1217190", "GSM1217201", "GSM1217202", "GSM1217203", "GSM1217204", "GSM1217205" ], "type": "dose", "id": "GDS5062_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5062", "version": 1.0, "instances": "25", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5062.tab", "compression": "gz" } ], [ [ "GDS5063.tab" ], { "title": "Conventional cigarette or modified-risk tobacco product smoke effect on lung bronchial epithelium: dose response", "description": "Analysis of left lung bronchi from males that were nose-only exposed for 28 days to smoke from reference cigarette 3R4F at doses up to 23ug nicotine/l or from a modified risk tobacco product (MRTP) at a dose of 23ug nicotine/l. Results provide insight into the reduced biological activity of MRTP.", "type": "Expression profiling by array", "pubmed_id": "24632068", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE50254", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5063", "description": "fresh air", "sample_id": [ "GSM1217206", "GSM1217207", "GSM1217208", "GSM1217209", "GSM1217210" ], "type": "agent", "id": "GDS5063_1" }, { "dataset_id": "GDS5063", "description": "modified risk pMRTP smoke", "sample_id": [ "GSM1217211", "GSM1217212", "GSM1217213", "GSM1217214", "GSM1217215" ], "type": "agent", "id": "GDS5063_2" }, { "dataset_id": "GDS5063", "description": "conventional 3R4F smoke", "sample_id": [ "GSM1217216", "GSM1217217", "GSM1217218", "GSM1217219", "GSM1217220", "GSM1217221", "GSM1217222", "GSM1217223", "GSM1217224", "GSM1217225", "GSM1217226", "GSM1217227", "GSM1217228", "GSM1217229", "GSM1217230" ], "type": "agent", "id": "GDS5063_3" }, { "dataset_id": "GDS5063", "description": "control", "sample_id": [ "GSM1217206", "GSM1217207", "GSM1217208", "GSM1217209", "GSM1217210" ], "type": "dose", "id": "GDS5063_4" }, { "dataset_id": "GDS5063", "description": "8 \u00b5g nicotine/l", "sample_id": [ "GSM1217221", "GSM1217222", "GSM1217223", "GSM1217224", "GSM1217225" ], "type": "dose", "id": "GDS5063_5" }, { "dataset_id": "GDS5063", "description": "15 \u00b5g nicotine/l", "sample_id": [ "GSM1217216", "GSM1217217", "GSM1217218", "GSM1217219", "GSM1217220" ], "type": "dose", "id": "GDS5063_6" }, { "dataset_id": "GDS5063", "description": "23 \u00b5g nicotine/l", "sample_id": [ "GSM1217211", "GSM1217212", "GSM1217213", "GSM1217214", "GSM1217215", "GSM1217226", "GSM1217227", "GSM1217228", "GSM1217229", "GSM1217230" ], "type": "dose", "id": "GDS5063_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5063", "version": 1.0, "instances": "25", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5063.tab", "compression": "gz" } ], [ [ "GDS5064.tab" ], { "title": "Neuroserpin G392E mutant expression", "description": "Analysis of HeLa cells expressing the G392E mutant of neuroserpin. Accumulation of mutant neuroserpin polymers in the ER is associated with familial encephalopathy with neuroserpin inclusion bodies. Results provide insight into pathways initiated by the polymerization of neuroserpin within the ER.", "type": "Expression profiling by array", "pubmed_id": "23814041", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE46230", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5064", "description": "negative control", "sample_id": [ "GSM1126821", "GSM1126822", "GSM1126823", "GSM1126824", "GSM1126825", "GSM1126826" ], "type": "genotype/variation", "id": "GDS5064_1" }, { "dataset_id": "GDS5064", "description": "truncated neuroserpin", "sample_id": [ "GSM1126827", "GSM1126828", "GSM1126829", "GSM1126830", "GSM1126831", "GSM1126832" ], "type": "genotype/variation", "id": "GDS5064_2" }, { "dataset_id": "GDS5064", "description": "G392E neuroserpin mutant", "sample_id": [ "GSM1126833", "GSM1126834", "GSM1126835", "GSM1126836", "GSM1126837", "GSM1126838" ], "type": "genotype/variation", "id": "GDS5064_3" }, { "dataset_id": "GDS5064", "description": "wild type neuroserpin", "sample_id": [ "GSM1126839", "GSM1126840", "GSM1126841", "GSM1126842", "GSM1126843", "GSM1126844" ], "type": "genotype/variation", "id": "GDS5064_4" }, { "dataset_id": "GDS5064", "description": "doxycycline", "sample_id": [ "GSM1126821", "GSM1126823", "GSM1126825", "GSM1126827", "GSM1126829", "GSM1126831", "GSM1126834", "GSM1126836", "GSM1126838", "GSM1126840", "GSM1126842", "GSM1126844" ], "type": "agent", "id": "GDS5064_5" }, { "dataset_id": "GDS5064", "description": "untreated", "sample_id": [ "GSM1126822", "GSM1126824", "GSM1126826", "GSM1126828", "GSM1126830", "GSM1126832", "GSM1126833", "GSM1126835", "GSM1126837", "GSM1126839", "GSM1126841", "GSM1126843" ], "type": "agent", "id": "GDS5064_6" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5064", "version": 1.0, "instances": "24", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5064.tab", "compression": "gz" } ], [ [ "GDS5065.tab" ], { "title": "X-box binding protein 1 overexpression effect on adipocyte cell line", "description": "Analysis of F424a adipocytes overexpressing an active spliced form of X-box binding protein 1 (XBP1). XBP is a transcription factor involved in the unfolded protein response. Results provide insight into the function of XBP1 in adipocytes.", "type": "Expression profiling by array", "pubmed_id": "23623498", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE46178", "order": "none", "update_date": "Jul 19 2014", "subsets": [ { "dataset_id": "GDS5065", "description": "GFP", "sample_id": [ "GSM1125686", "GSM1125687", "GSM1125688", "GSM1125689" ], "type": "agent", "id": "GDS5065_1" }, { "dataset_id": "GDS5065", "description": "spliced XBP1", "sample_id": [ "GSM1125690", "GSM1125691", "GSM1125692", "GSM1125693" ], "type": "agent", "id": "GDS5065_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5065", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5065.tab", "compression": "gz" } ], [ [ "GDS5066.tab" ], { "title": "Insm1 deficiency effect on the fetal pituitary gland", "description": "Analysis of pituitary glands from embryonic day 17.5 mutants deficient for Insm1. The Insm1 gene encodes a zinc finger factor expressed in many endocrine organs. Results provide insight into the role of Insm1 in the development of the pituitary gland.", "type": "Expression profiling by array", "pubmed_id": "24227653", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE46139", "order": "none", "update_date": "Jul 19 2014", "subsets": [ { "dataset_id": "GDS5066", "description": "control", "sample_id": [ "GSM1124857", "GSM1124858", "GSM1124859", "GSM1124860", "GSM1124861", "GSM1124862", "GSM1124863", "GSM1124864", "GSM1124865", "GSM1124866" ], "type": "genotype/variation", "id": "GDS5066_1" }, { "dataset_id": "GDS5066", "description": "Insm1 null", "sample_id": [ "GSM1124851", "GSM1124852", "GSM1124853", "GSM1124854", "GSM1124855", "GSM1124856" ], "type": "genotype/variation", "id": "GDS5066_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5066", "version": 1.0, "instances": "16", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5066.tab", "compression": "gz" } ], [ [ "GDS5067.tab" ], { "title": "Oligooxopiperazine effect on hypoxic alveolar adenocarcinoma cell line", "description": "Analysis of hypoxic A549 cells treated with oligooxopiperazines (OOPs) BB2-125, BB2-162, and BB2-282. OOPs are designed mimics of a key \u03b1-helical domain at the interface of hypoxia-inducible factor 1\u03b1 (HIF1\u03b1) and coactivator p300. Results provide insight into the effect of OOPs on HIF signaling.", "type": "Expression profiling by array", "pubmed_id": "24821806", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE48134", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5067", "description": "normoxia", "sample_id": [ "GSM1169207", "GSM1169208", "GSM1169209" ], "type": "stress", "id": "GDS5067_1" }, { "dataset_id": "GDS5067", "description": "hypoxia", "sample_id": [ "GSM1169210", "GSM1169211", "GSM1169212", "GSM1169213", "GSM1169214", "GSM1169215", "GSM1169216", "GSM1169217", "GSM1169218", "GSM1169219", "GSM1169220", "GSM1169221" ], "type": "stress", "id": "GDS5067_2" }, { "dataset_id": "GDS5067", "description": "oligooxopiperazine BB2-125", "sample_id": [ "GSM1169213", "GSM1169214", "GSM1169215" ], "type": "agent", "id": "GDS5067_3" }, { "dataset_id": "GDS5067", "description": "oligooxopiperazine BB2-162", "sample_id": [ "GSM1169216", "GSM1169217", "GSM1169218" ], "type": "agent", "id": "GDS5067_4" }, { "dataset_id": "GDS5067", "description": "oligooxopiperazine BB2-282", "sample_id": [ "GSM1169219", "GSM1169220", "GSM1169221" ], "type": "agent", "id": "GDS5067_5" }, { "dataset_id": "GDS5067", "description": "control", "sample_id": [ "GSM1169207", "GSM1169208", "GSM1169209", "GSM1169210", "GSM1169211", "GSM1169212" ], "type": "agent", "id": "GDS5067_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5067", "version": 1.0, "instances": "15", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5067.tab", "compression": "gz" } ], [ [ "GDS5068.tab" ], { "title": "Rheumatoid arthritic synovium response to tocilizumab", "description": "Analysis of synovial biopsies from rheumatoid arthritis patients before and 12 weeks after the start of tocilizumab (TCZ) therapy. Results compared to those obtained from methotrexate (MTX) therapy (GDS5069) and provide insight into the differences in the mechanisms of action between TCZ and MTX.", "type": "Expression profiling by array", "pubmed_id": "24449571", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE45867", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS5068", "description": "baseline", "sample_id": [ "GSM1116933", "GSM1116951", "GSM1116953", "GSM1116955", "GSM1116935", "GSM1116937", "GSM1116939", "GSM1116941", "GSM1116943", "GSM1116945", "GSM1116947", "GSM1116949" ], "type": "agent", "id": "GDS5068_1" }, { "dataset_id": "GDS5068", "description": "tocilizumab", "sample_id": [ "GSM1116934", "GSM1116952", "GSM1116954", "GSM1116956", "GSM1116936", "GSM1116938", "GSM1116940", "GSM1116942", "GSM1116944", "GSM1116946", "GSM1116948", "GSM1116950" ], "type": "agent", "id": "GDS5068_2" }, { "dataset_id": "GDS5068", "description": "patient 1", "sample_id": [ "GSM1116933", "GSM1116934" ], "type": "individual", "id": "GDS5068_3" }, { "dataset_id": "GDS5068", "description": "patient 2", "sample_id": [ "GSM1116935", "GSM1116936" ], "type": "individual", "id": "GDS5068_4" }, { "dataset_id": "GDS5068", "description": "patient 3", "sample_id": [ "GSM1116937", "GSM1116938" ], "type": "individual", "id": "GDS5068_5" }, { "dataset_id": "GDS5068", "description": "patient 4", "sample_id": [ "GSM1116939", "GSM1116940" ], "type": "individual", "id": "GDS5068_6" }, { "dataset_id": "GDS5068", "description": "patient 5", "sample_id": [ "GSM1116941", "GSM1116942" ], "type": "individual", "id": "GDS5068_7" }, { "dataset_id": "GDS5068", "description": "patient 6", "sample_id": [ "GSM1116943", "GSM1116944" ], "type": "individual", "id": "GDS5068_8" }, { "dataset_id": "GDS5068", "description": "patient 7", "sample_id": [ "GSM1116945", "GSM1116946" ], "type": "individual", "id": "GDS5068_9" }, { "dataset_id": "GDS5068", "description": "patient 8", "sample_id": [ "GSM1116947", "GSM1116948" ], "type": "individual", "id": "GDS5068_10" }, { "dataset_id": "GDS5068", "description": "patient 9", "sample_id": [ "GSM1116949", "GSM1116950" ], "type": "individual", "id": "GDS5068_11" }, { "dataset_id": "GDS5068", "description": "patient 10", "sample_id": [ "GSM1116951", "GSM1116952" ], "type": "individual", "id": "GDS5068_12" }, { "dataset_id": "GDS5068", "description": "patient 11", "sample_id": [ "GSM1116953", "GSM1116954" ], "type": "individual", "id": "GDS5068_13" }, { "dataset_id": "GDS5068", "description": "patient 12", "sample_id": [ "GSM1116955", "GSM1116956" ], "type": "individual", "id": "GDS5068_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5068", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5068.tab", "compression": "gz" } ], [ [ "GDS5069.tab" ], { "title": "Rheumatoid arthritic synovium response to methotrexate", "description": "Analysis of synovial biopsies from rheumatoid arthritis patients before and 12 weeks after the start of methotrexate (MTX) therapy. Results compared to those obtained from tocilizumab (TCZ) therapy (GDS5068) and provide insight into the differences in the mechanisms of action between TCZ and MTX.", "type": "Expression profiling by array", "pubmed_id": "24449571", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE45867", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS5069", "description": "baseline", "sample_id": [ "GSM1116971", "GSM1116969", "GSM1116967", "GSM1116965", "GSM1116963", "GSM1116961", "GSM1116959", "GSM1116957" ], "type": "agent", "id": "GDS5069_1" }, { "dataset_id": "GDS5069", "description": "methotrexate", "sample_id": [ "GSM1116972", "GSM1116970", "GSM1116968", "GSM1116966", "GSM1116964", "GSM1116962", "GSM1116960", "GSM1116958" ], "type": "agent", "id": "GDS5069_2" }, { "dataset_id": "GDS5069", "description": "patient 1", "sample_id": [ "GSM1116957", "GSM1116958" ], "type": "individual", "id": "GDS5069_3" }, { "dataset_id": "GDS5069", "description": "patient 2", "sample_id": [ "GSM1116959", "GSM1116960" ], "type": "individual", "id": "GDS5069_4" }, { "dataset_id": "GDS5069", "description": "patient 3", "sample_id": [ "GSM1116961", "GSM1116962" ], "type": "individual", "id": "GDS5069_5" }, { "dataset_id": "GDS5069", "description": "patient 4", "sample_id": [ "GSM1116963", "GSM1116964" ], "type": "individual", "id": "GDS5069_6" }, { "dataset_id": "GDS5069", "description": "patient 5", "sample_id": [ "GSM1116965", "GSM1116966" ], "type": "individual", "id": "GDS5069_7" }, { "dataset_id": "GDS5069", "description": "patient 6", "sample_id": [ "GSM1116967", "GSM1116968" ], "type": "individual", "id": "GDS5069_8" }, { "dataset_id": "GDS5069", "description": "patient 7", "sample_id": [ "GSM1116969", "GSM1116970" ], "type": "individual", "id": "GDS5069_9" }, { "dataset_id": "GDS5069", "description": "patient 8", "sample_id": [ "GSM1116971", "GSM1116972" ], "type": "individual", "id": "GDS5069_10" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5069", "version": 1.0, "instances": "16", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5069.tab", "compression": "gz" } ], [ [ "GDS507.tab" ], { "title": "Renal clear cell carcinoma (HG-U133B)", "description": "Investigation into mechanisms of renal clear cell carcinogenesis (RCC). Comparison of renal clear cell tumor tissue and adjacent normal tissue isolated from the same surgical samples.", "type": "Expression profiling by array", "pubmed_id": "14641932", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE781", "order": "none", "update_date": "Mar 04 2004", "subsets": [ { "dataset_id": "GDS507", "description": "RCC", "sample_id": [ "GSM11815", "GSM11832", "GSM12069", "GSM12083", "GSM12101", "GSM12106", "GSM12274", "GSM12299", "GSM12412" ], "type": "disease state", "id": "GDS507_1" }, { "dataset_id": "GDS507", "description": "normal", "sample_id": [ "GSM11810", "GSM11827", "GSM12078", "GSM12099", "GSM12269", "GSM12287", "GSM12301", "GSM12448" ], "type": "disease state", "id": "GDS507_2" }, { "dataset_id": "GDS507", "description": "035", "sample_id": [ "GSM11810", "GSM11815" ], "type": "individual", "id": "GDS507_3" }, { "dataset_id": "GDS507", "description": "023", "sample_id": [ "GSM11827", "GSM11832" ], "type": "individual", "id": "GDS507_4" }, { "dataset_id": "GDS507", "description": "001", "sample_id": [ "GSM12069", "GSM12078" ], "type": "individual", "id": "GDS507_5" }, { "dataset_id": "GDS507", "description": "005", "sample_id": [ "GSM12083", "GSM12099" ], "type": "individual", "id": "GDS507_6" }, { "dataset_id": "GDS507", "description": "011", "sample_id": [ "GSM12101" ], "type": "individual", "id": "GDS507_7" }, { "dataset_id": "GDS507", "description": "032", "sample_id": [ "GSM12106" ], "type": "individual", "id": "GDS507_8" }, { "dataset_id": "GDS507", "description": "1", "sample_id": [ "GSM12269" ], "type": "individual", "id": "GDS507_9" }, { "dataset_id": "GDS507", "description": "2", "sample_id": [ "GSM12274", "GSM12287" ], "type": "individual", "id": "GDS507_10" }, { "dataset_id": "GDS507", "description": "3", "sample_id": [ "GSM12299", "GSM12301" ], "type": "individual", "id": "GDS507_11" }, { "dataset_id": "GDS507", "description": "4", "sample_id": [ "GSM12412", "GSM12448" ], "type": "individual", "id": "GDS507_12" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS507", "version": 1.0, "instances": "17", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS507.tab", "compression": "gz" } ], [ [ "GDS5070.tab" ], { "title": "Zinc finger transcription factor ZXDC depletion effect on myeloid cell line undergoing differentiation", "description": "Analysis of U937 myeloid cells treated with phorbol 12-myristate 13-acetate (PMA) and depleted for the zinc finger transcription factor ZXDC. PMA treatment induces myeloid cell differentiation. Results provide insight into the role of ZXDC in myeloid cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "23954399", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE45417", "order": "none", "update_date": "Jul 21 2014", "subsets": [ { "dataset_id": "GDS5070", "description": "vehicle", "sample_id": [ "GSM1103981", "GSM1103977", "GSM1103973", "GSM1103974", "GSM1103982", "GSM1103978" ], "type": "agent", "id": "GDS5070_1" }, { "dataset_id": "GDS5070", "description": "phorbol 12-myristate 13-acetate", "sample_id": [ "GSM1103983", "GSM1103979", "GSM1103975", "GSM1103984", "GSM1103980", "GSM1103976" ], "type": "agent", "id": "GDS5070_2" }, { "dataset_id": "GDS5070", "description": "control", "sample_id": [ "GSM1103981", "GSM1103977", "GSM1103973", "GSM1103983", "GSM1103979", "GSM1103975" ], "type": "protocol", "id": "GDS5070_3" }, { "dataset_id": "GDS5070", "description": "ZXDC depletion", "sample_id": [ "GSM1103974", "GSM1103982", "GSM1103978", "GSM1103984", "GSM1103980", "GSM1103976" ], "type": "protocol", "id": "GDS5070_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5070", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5070.tab", "compression": "gz" } ], [ [ "GDS5071.tab" ], { "title": "Non-syndromic cleft lip and palate: dental pulp stem cell cultures", "description": "Analysis of NSCL/P dental pulp stem cells cultures. This cell source consists of mesodermal and neural crest derived cells and, therefore, it shares the same origin with cells involved in lip and palate morphogenesis. Results provide insight into molecular mechanisms underlying NSCL/P etiology.", "type": "Expression profiling by array", "pubmed_id": "23776525", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE42589", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5071", "description": "non-syndromic cleft lip/palate", "sample_id": [ "GSM1045517", "GSM1045518", "GSM1045519", "GSM1045520", "GSM1045521", "GSM1045522", "GSM1045523" ], "type": "disease state", "id": "GDS5071_1" }, { "dataset_id": "GDS5071", "description": "healthy control", "sample_id": [ "GSM1045524", "GSM1045525", "GSM1045526", "GSM1045527", "GSM1045528", "GSM1045529" ], "type": "disease state", "id": "GDS5071_2" }, { "dataset_id": "GDS5071", "description": "male", "sample_id": [ "GSM1045517", "GSM1045518", "GSM1045519", "GSM1045522", "GSM1045523", "GSM1045525", "GSM1045527" ], "type": "gender", "id": "GDS5071_3" }, { "dataset_id": "GDS5071", "description": "female", "sample_id": [ "GSM1045520", "GSM1045521", "GSM1045524", "GSM1045526", "GSM1045528", "GSM1045529" ], "type": "gender", "id": "GDS5071_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5071", "version": 1.0, "instances": "13", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5071.tab", "compression": "gz" } ], [ [ "GDS5072.tab" ], { "title": "High grade prostate cancer", "description": "Analysis of prostate cancer cells microdissected from high grade prostate cancer tumor samples. Results identify a gene expression signature for high grade prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "19956859", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE45016", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5072", "description": "prostate cancer", "sample_id": [ "GSM1095877", "GSM1095878", "GSM1095879", "GSM1095880", "GSM1095881", "GSM1095882", "GSM1095883", "GSM1095884", "GSM1095885", "GSM1095886" ], "type": "disease state", "id": "GDS5072_1" }, { "dataset_id": "GDS5072", "description": "control", "sample_id": [ "GSM1095876" ], "type": "disease state", "id": "GDS5072_2" }, { "dataset_id": "GDS5072", "description": "gleason score n/a", "sample_id": [ "GSM1095876" ], "type": "other", "id": "GDS5072_3" }, { "dataset_id": "GDS5072", "description": "gleason score 8", "sample_id": [ "GSM1095883", "GSM1095886" ], "type": "other", "id": "GDS5072_4" }, { "dataset_id": "GDS5072", "description": "gleason score 9", "sample_id": [ "GSM1095877", "GSM1095878", "GSM1095879", "GSM1095880", "GSM1095881", "GSM1095882", "GSM1095884", "GSM1095885" ], "type": "other", "id": "GDS5072_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5072", "version": 1.0, "instances": "11", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5072.tab", "compression": "gz" } ], [ [ "GDS5073.tab" ], { "title": "IL-4 IL-13 double mutant liver response to acute injury", "description": "Analysis of livers of IL-4 IL-13 double mutants 2 days following treatment with carbon tetracholoride to induce acute liver injury. Results provide insight into the role of IL-4 and IL-13 in liver regeneration.", "type": "Expression profiling by array", "pubmed_id": "23716700", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE45002", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5073", "description": "wild type", "sample_id": [ "GSM1095653", "GSM1095655", "GSM1095656", "GSM1095657" ], "type": "genotype/variation", "id": "GDS5073_1" }, { "dataset_id": "GDS5073", "description": "IL-4 IL-13 double mutant", "sample_id": [ "GSM1095654", "GSM1095658", "GSM1095659", "GSM1095660" ], "type": "genotype/variation", "id": "GDS5073_2" }, { "dataset_id": "GDS5073", "description": "vehicle", "sample_id": [ "GSM1095653", "GSM1095654" ], "type": "agent", "id": "GDS5073_3" }, { "dataset_id": "GDS5073", "description": "CCL4", "sample_id": [ "GSM1095655", "GSM1095656", "GSM1095657", "GSM1095658", "GSM1095659", "GSM1095660" ], "type": "agent", "id": "GDS5073_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5073", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5073.tab", "compression": "gz" } ], [ [ "GDS5074.tab" ], { "title": "First-time acute myocardial infarction: peripheral blood", "description": "Analysis of circulating blood from first-time acute myocardial infarction (AMI) patients within 48 hours of MI. Results provide insight into molecular mechanisms underlying the response of circulating cells to first-time AMI.", "type": "Expression profiling by array", "pubmed_id": "24801707", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "transformed count", "reference_series": "GSE48060", "order": "none", "update_date": "Jul 30 2014", "subsets": [ { "dataset_id": "GDS5074", "description": "acute myocardial infarction", "sample_id": [ "GSM1167072", "GSM1167073", "GSM1167074", "GSM1167075", "GSM1167076", "GSM1167077", "GSM1167078", "GSM1167079", "GSM1167080", "GSM1167081", "GSM1167082", "GSM1167083", "GSM1167084", "GSM1167085", "GSM1167086", "GSM1167087", "GSM1167088", "GSM1167089", "GSM1167090", "GSM1167091", "GSM1167092", "GSM1167093", "GSM1167094", "GSM1167095", "GSM1167096", "GSM1167097", "GSM1167098", "GSM1167099", "GSM1167100", "GSM1167101", "GSM1167122" ], "type": "disease state", "id": "GDS5074_1" }, { "dataset_id": "GDS5074", "description": "normal control", "sample_id": [ "GSM1167102", "GSM1167103", "GSM1167104", "GSM1167105", "GSM1167106", "GSM1167107", "GSM1167108", "GSM1167109", "GSM1167110", "GSM1167111", "GSM1167112", "GSM1167113", "GSM1167114", "GSM1167115", "GSM1167116", "GSM1167117", "GSM1167118", "GSM1167119", "GSM1167120", "GSM1167121", "GSM1167123" ], "type": "disease state", "id": "GDS5074_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5074", "version": 1.0, "instances": "52", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5074.tab", "compression": "gz" } ], [ [ "GDS5075.tab" ], { "title": "Myotube response to prion infection in vitro", "description": "Analysis of non-proliferating myotubes infected with the Rocky Mountain Laboratory prion strain. Myotubes derived from the C2C12 myoblast cell line. Non-proliferating cells accumulate high levels of prions. Results provide insight into the cellular impact of prion infection.", "type": "Expression profiling by array", "pubmed_id": "24244171", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE44563", "order": "none", "update_date": "Jul 22 2014", "subsets": [ { "dataset_id": "GDS5075", "description": "none", "sample_id": [ "GSM1086986", "GSM1086987", "GSM1086988" ], "type": "infection", "id": "GDS5075_1" }, { "dataset_id": "GDS5075", "description": "prion", "sample_id": [ "GSM1086983", "GSM1086984", "GSM1086985" ], "type": "infection", "id": "GDS5075_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5075", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5075.tab", "compression": "gz" } ], [ [ "GDS5076.tab" ], { "title": "PIAS1 SUMO ligase depletion effect on breast cancer cell line", "description": "Analysis of MDA-MB231 breast cancer cells depleted for PIAS1. PIAS1 is a SUMO ligase. Results provide insight into the role of PIAS1 in breast tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "24586797", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE44024", "order": "none", "update_date": "Jul 23 2014", "subsets": [ { "dataset_id": "GDS5076", "description": "PIAS1 depletion", "sample_id": [ "GSM1076967", "GSM1076968" ], "type": "protocol", "id": "GDS5076_1" }, { "dataset_id": "GDS5076", "description": "control", "sample_id": [ "GSM1076965", "GSM1076966" ], "type": "protocol", "id": "GDS5076_2" }, { "dataset_id": "GDS5076", "description": "DMEM media", "sample_id": [ "GSM1076965", "GSM1076967" ], "type": "growth protocol", "id": "GDS5076_3" }, { "dataset_id": "GDS5076", "description": "SCM media", "sample_id": [ "GSM1076966", "GSM1076968" ], "type": "growth protocol", "id": "GDS5076_4" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5076", "version": 1.0, "instances": "4", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5076.tab", "compression": "gz" } ], [ [ "GDS5077.tab" ], { "title": "Transmembrane protein 88 depletion effect on stem cell cardiac differentiation in vitro", "description": "Analysis of RUES2 stem cells first depleted for transmembrane protein 88 (TMEM88) and then induced to differentiate into cardiac cells. RUES cells examined at day 5 of differentitation. Results provide insight into the role of TMEM 88 in cardiac cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "23924634", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE43805", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5077", "description": "TMEM88 depletion", "sample_id": [ "GSM1071456", "GSM1071457" ], "type": "protocol", "id": "GDS5077_1" }, { "dataset_id": "GDS5077", "description": "control", "sample_id": [ "GSM1071454", "GSM1071455" ], "type": "protocol", "id": "GDS5077_2" }, { "dataset_id": "GDS5077", "description": "shRNA for first exon of TMEM88", "sample_id": [ "GSM1071457" ], "type": "other", "id": "GDS5077_3" }, { "dataset_id": "GDS5077", "description": "shRNA for 3'UTR of TMEM88", "sample_id": [ "GSM1071456" ], "type": "other", "id": "GDS5077_4" }, { "dataset_id": "GDS5077", "description": "non-targetting shRNA", "sample_id": [ "GSM1071454", "GSM1071455" ], "type": "other", "id": "GDS5077_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5077", "version": 1.0, "instances": "4", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5077.tab", "compression": "gz" } ], [ [ "GDS5078.tab" ], { "title": "Fra-1 deficient lung response to fibrotic agent bleomycin", "description": "Analysis of lungs from Fra-1 deficient mutants 5 days following intratracheal administration of bleomycin to induce lung fibrosis. Fra-1 is a b-ZIP transcription factor. Results provide insight into the molecular mechanisms by which Fra-1 protects against bleomycin-induced lung injury.", "type": "Expression profiling by array", "pubmed_id": "23758685", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE43695", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5078", "description": "wild type", "sample_id": [ "GSM1068446", "GSM1068447", "GSM1068448", "GSM1068449", "GSM1068450", "GSM1068451" ], "type": "genotype/variation", "id": "GDS5078_1" }, { "dataset_id": "GDS5078", "description": "Fra-1 null", "sample_id": [ "GSM1068452", "GSM1068453", "GSM1068454", "GSM1068455", "GSM1068456", "GSM1068457" ], "type": "genotype/variation", "id": "GDS5078_2" }, { "dataset_id": "GDS5078", "description": "PBS", "sample_id": [ "GSM1068446", "GSM1068447", "GSM1068448", "GSM1068452", "GSM1068453", "GSM1068454" ], "type": "agent", "id": "GDS5078_3" }, { "dataset_id": "GDS5078", "description": "bleomycin", "sample_id": [ "GSM1068449", "GSM1068450", "GSM1068451", "GSM1068455", "GSM1068456", "GSM1068457" ], "type": "agent", "id": "GDS5078_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5078", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5078.tab", "compression": "gz" } ], [ [ "GDS5079.tab" ], { "title": "Ubiquitin-specific protease 2 deficiency effect on the kidney", "description": "Analysis of kidneys from mutants deficient for ubiquitin-specific protease 2 (Usp2). Results provide insight into the role of Usp2 in kidney function.", "type": "Expression profiling by array", "pubmed_id": "23552861", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE43517", "order": "none", "update_date": "Jul 23 2014", "subsets": [ { "dataset_id": "GDS5079", "description": "wild type", "sample_id": [ "GSM1064784", "GSM1064785" ], "type": "genotype/variation", "id": "GDS5079_1" }, { "dataset_id": "GDS5079", "description": "Usp2 null", "sample_id": [ "GSM1064786", "GSM1064787" ], "type": "genotype/variation", "id": "GDS5079_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5079", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5079.tab", "compression": "gz" } ], [ [ "GDS508.tab" ], { "title": "Denervation effect on lacrimal gland", "description": "Analysis of lacrimal gland (LG) 7 days after greater superficial petrosal nerve sectioning. LG ipsilateral to the experimental side, sham operated and unoperated controls included. LG denervation results in severe dry eye like symptoms.", "type": "Expression profiling by array", "pubmed_id": "15084711", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE844", "order": "none", "update_date": "Mar 04 2004", "subsets": [ { "dataset_id": "GDS508", "description": "operated", "sample_id": [ "GSM12945", "GSM12947", "GSM12949", "GSM12951", "GSM12953" ], "type": "protocol", "id": "GDS508_1" }, { "dataset_id": "GDS508", "description": "operated contralateral", "sample_id": [ "GSM12935", "GSM12937", "GSM12939" ], "type": "protocol", "id": "GDS508_2" }, { "dataset_id": "GDS508", "description": "sham operated", "sample_id": [ "GSM12943" ], "type": "protocol", "id": "GDS508_3" }, { "dataset_id": "GDS508", "description": "unoperated", "sample_id": [ "GSM12941" ], "type": "protocol", "id": "GDS508_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS508", "version": 1.0, "instances": "10", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS508.tab", "compression": "gz" } ], [ [ "GDS5080.tab" ], { "title": "Undifferentiated amniotic-fluid kidney progenitor cells", "description": "Analysis of undifferentiated cells: triple positive sorted, amniotic-fluid kidney progenitor cells (hAKPC) and conditionally immortalized de-differentiated podocytes (hIPod). Results provide comparison of cell types and insight into mechanisms of stem cell differentiation into podocytes.", "type": "Expression profiling by array", "pubmed_id": "24349133", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE49439", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5080", "description": "amniotic-fluid derived hAKPC-P", "sample_id": [ "GSM1199231", "GSM1199232", "GSM1199233" ], "type": "cell line", "id": "GDS5080_1" }, { "dataset_id": "GDS5080", "description": "immortalized podocyte cell line hIPod", "sample_id": [ "GSM1199237", "GSM1199238", "GSM1199239" ], "type": "cell line", "id": "GDS5080_2" }, { "dataset_id": "GDS5080", "description": "de-differentiated expanded at 33C in RPMI-1640", "sample_id": [ "GSM1199237", "GSM1199238", "GSM1199239" ], "type": "growth protocol", "id": "GDS5080_3" }, { "dataset_id": "GDS5080", "description": "undifferentiated expanded in Chang's media", "sample_id": [ "GSM1199231", "GSM1199232", "GSM1199233" ], "type": "growth protocol", "id": "GDS5080_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5080", "version": 1.0, "instances": "6", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5080.tab", "compression": "gz" } ], [ [ "GDS5082.tab" ], { "title": "Fetal alcohol spectrum disorder model: whole embryo", "description": "Analysis of embryos treated with ethanol in embryo medium from 2 hours post fertilization (hpf) to 8hpf. FASD occurs when pregnant mothers consume alcohol, causing embryonic ethanol exposure and characteristic developmental defects. Results provide insight into molecular basis of FASD pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24167711", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE48380", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5082", "description": "100 mM ethanol treated", "sample_id": [ "GSM1176791", "GSM1176789", "GSM1176787", "GSM1176785", "GSM1176783", "GSM1176781", "GSM1176779" ], "type": "protocol", "id": "GDS5082_1" }, { "dataset_id": "GDS5082", "description": "untreated control", "sample_id": [ "GSM1176786", "GSM1176784", "GSM1176782", "GSM1176780", "GSM1176778", "GSM1176790", "GSM1176788" ], "type": "protocol", "id": "GDS5082_2" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS5082", "version": 1.0, "instances": "14", "variables": 13302, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5082.tab", "compression": "gz" } ], [ [ "GDS5083.tab" ], { "title": "Carotid artery atheroma", "description": "Analysis of carotid artery atheromatous plaques from hypertensive patients. Atheromas are fatty deposits in the walls of arteries. Results provide insight into the molecular pathogenesis of atheroma.", "type": "Expression profiling by array", "pubmed_id": "23660665", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "64", "value_type": "transformed count", "reference_series": "GSE43292", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5083", "description": "atheroma plaque", "sample_id": [ "GSM1060118", "GSM1060120", "GSM1060122", "GSM1060124", "GSM1060126", "GSM1060128", "GSM1060130", "GSM1060132", "GSM1060134", "GSM1060136", "GSM1060138", "GSM1060140", "GSM1060142", "GSM1060144", "GSM1060146", "GSM1060148", "GSM1060150", "GSM1060152", "GSM1060154", "GSM1060156", "GSM1060158", "GSM1060160", "GSM1060162", "GSM1060164", "GSM1060166", "GSM1060168", "GSM1060170", "GSM1060172", "GSM1060174", "GSM1060176", "GSM1060178", "GSM1060180" ], "type": "specimen", "id": "GDS5083_1" }, { "dataset_id": "GDS5083", "description": "adjacent carotid tissue", "sample_id": [ "GSM1060117", "GSM1060119", "GSM1060121", "GSM1060123", "GSM1060125", "GSM1060127", "GSM1060129", "GSM1060131", "GSM1060133", "GSM1060135", "GSM1060137", "GSM1060139", "GSM1060141", "GSM1060143", "GSM1060145", "GSM1060147", "GSM1060149", "GSM1060151", "GSM1060153", "GSM1060155", "GSM1060157", "GSM1060159", "GSM1060161", "GSM1060163", "GSM1060165", "GSM1060167", "GSM1060169", "GSM1060171", "GSM1060173", "GSM1060175", "GSM1060177", "GSM1060179" ], "type": "specimen", "id": "GDS5083_2" }, { "dataset_id": "GDS5083", "description": "patient 1", "sample_id": [ "GSM1060117", "GSM1060118" ], "type": "individual", "id": "GDS5083_3" }, { "dataset_id": "GDS5083", "description": "patient 2", "sample_id": [ "GSM1060119", "GSM1060120" ], "type": "individual", "id": "GDS5083_4" }, { "dataset_id": "GDS5083", "description": "patient 3", "sample_id": [ "GSM1060121", "GSM1060122" ], "type": "individual", "id": "GDS5083_5" }, { "dataset_id": "GDS5083", "description": "patient 4", "sample_id": [ "GSM1060123", "GSM1060124" ], "type": "individual", "id": "GDS5083_6" }, { "dataset_id": "GDS5083", "description": "patient 5", "sample_id": [ "GSM1060125", "GSM1060126" ], "type": "individual", "id": "GDS5083_7" }, { "dataset_id": "GDS5083", "description": "patient 6", "sample_id": [ "GSM1060127", "GSM1060128" ], "type": "individual", "id": "GDS5083_8" }, { "dataset_id": "GDS5083", "description": "patient 7", "sample_id": [ "GSM1060129", "GSM1060130" ], "type": "individual", "id": "GDS5083_9" }, { "dataset_id": "GDS5083", "description": "patient 8", "sample_id": [ "GSM1060131", "GSM1060132" ], "type": "individual", "id": "GDS5083_10" }, { "dataset_id": "GDS5083", "description": "patient 9", "sample_id": [ "GSM1060133", "GSM1060134" ], "type": "individual", "id": "GDS5083_11" }, { "dataset_id": "GDS5083", "description": "patient 10", "sample_id": [ "GSM1060135", "GSM1060136" ], "type": "individual", "id": "GDS5083_12" }, { "dataset_id": "GDS5083", "description": "patient 11", "sample_id": [ "GSM1060137", "GSM1060138" ], "type": "individual", "id": "GDS5083_13" }, { "dataset_id": "GDS5083", "description": "patient 12", "sample_id": [ "GSM1060139", "GSM1060140" ], "type": "individual", "id": "GDS5083_14" }, { "dataset_id": "GDS5083", "description": "patient 13", "sample_id": [ "GSM1060141", "GSM1060142" ], "type": "individual", "id": "GDS5083_15" }, { "dataset_id": "GDS5083", "description": "patient 14", "sample_id": [ "GSM1060143", "GSM1060144" ], "type": "individual", "id": "GDS5083_16" }, { "dataset_id": "GDS5083", "description": "patient 15", "sample_id": [ "GSM1060145", "GSM1060146" ], "type": "individual", "id": "GDS5083_17" }, { "dataset_id": "GDS5083", "description": "patient 16", "sample_id": [ "GSM1060147", "GSM1060148" ], "type": "individual", "id": "GDS5083_18" }, { "dataset_id": "GDS5083", "description": "patient 17", "sample_id": [ "GSM1060149", "GSM1060150" ], "type": "individual", "id": "GDS5083_19" }, { "dataset_id": "GDS5083", "description": "patient 18", "sample_id": [ "GSM1060151", "GSM1060152" ], "type": "individual", "id": "GDS5083_20" }, { "dataset_id": "GDS5083", "description": "patient 19", "sample_id": [ "GSM1060153", "GSM1060154" ], "type": "individual", "id": "GDS5083_21" }, { "dataset_id": "GDS5083", "description": "patient 20", "sample_id": [ "GSM1060155", "GSM1060156" ], "type": "individual", "id": "GDS5083_22" }, { "dataset_id": "GDS5083", "description": "patient 21", "sample_id": [ "GSM1060157", "GSM1060158" ], "type": "individual", "id": "GDS5083_23" }, { "dataset_id": "GDS5083", "description": "patient 22", "sample_id": [ "GSM1060159", "GSM1060160" ], "type": "individual", "id": "GDS5083_24" }, { "dataset_id": "GDS5083", "description": "patient 23", "sample_id": [ "GSM1060161", "GSM1060162" ], "type": "individual", "id": "GDS5083_25" }, { "dataset_id": "GDS5083", "description": "patient 24", "sample_id": [ "GSM1060163", "GSM1060164" ], "type": "individual", "id": "GDS5083_26" }, { "dataset_id": "GDS5083", "description": "patient 25", "sample_id": [ "GSM1060165", "GSM1060166" ], "type": "individual", "id": "GDS5083_27" }, { "dataset_id": "GDS5083", "description": "patient 26", "sample_id": [ "GSM1060167", "GSM1060168" ], "type": "individual", "id": "GDS5083_28" }, { "dataset_id": "GDS5083", "description": "patient 27", "sample_id": [ "GSM1060169", "GSM1060170" ], "type": "individual", "id": "GDS5083_29" }, { "dataset_id": "GDS5083", "description": "patient 28", "sample_id": [ "GSM1060171", "GSM1060172" ], "type": "individual", "id": "GDS5083_30" }, { "dataset_id": "GDS5083", "description": "patient 29", "sample_id": [ "GSM1060173", "GSM1060174" ], "type": "individual", "id": "GDS5083_31" }, { "dataset_id": "GDS5083", "description": "patient 30", "sample_id": [ "GSM1060175", "GSM1060176" ], "type": "individual", "id": "GDS5083_32" }, { "dataset_id": "GDS5083", "description": "patient 31", "sample_id": [ "GSM1060177", "GSM1060178" ], "type": "individual", "id": "GDS5083_33" }, { "dataset_id": "GDS5083", "description": "patient 32", "sample_id": [ "GSM1060179", "GSM1060180" ], "type": "individual", "id": "GDS5083_34" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5083", "version": 1.0, "instances": "64", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5083.tab", "compression": "gz" } ], [ [ "GDS5084.tab" ], { "title": "E2A transcription factor deficiency effect on DN2 thymocyte", "description": "Analysis of DN2 thymocytes from mutants lacking the transcripton factor E2A. Results provide insight into the role of E2A in the development of T-cells.", "type": "Expression profiling by array", "pubmed_id": "23297135", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE43224", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5084", "description": "control", "sample_id": [ "GSM1058959", "GSM1058960", "GSM1058961" ], "type": "genotype/variation", "id": "GDS5084_1" }, { "dataset_id": "GDS5084", "description": "E2A null", "sample_id": [ "GSM1058962", "GSM1058963", "GSM1058964" ], "type": "genotype/variation", "id": "GDS5084_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5084", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5084.tab", "compression": "gz" } ], [ [ "GDS5085.tab" ], { "title": "Oncogenic BRAF harboring melanoma cell line response to BRAF inhibition", "description": "Analysis of A375 melanoma cells harboring the BRAF V600E oncogenic mutation following treatment with the BRAF inhibitor vemurafenib. Results provide insight into the role of the BRAF V600E oncogene in the pathogenesis of melanoma.", "type": "Expression profiling by array", "pubmed_id": "24469106", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE42872", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5085", "description": "vehicle", "sample_id": [ "GSM1052615", "GSM1052616", "GSM1052617" ], "type": "agent", "id": "GDS5085_1" }, { "dataset_id": "GDS5085", "description": "vemurafenib", "sample_id": [ "GSM1052618", "GSM1052619", "GSM1052620" ], "type": "agent", "id": "GDS5085_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5085", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5085.tab", "compression": "gz" } ], [ [ "GDS5086.tab" ], { "title": "Dendritic cell response to Leishmania major infection: time course", "description": "Analysis of dendritic cells for up to 24 hours following infection with Leishmania major. Leishmaniasis is a group of insect vector transmitted parasitic diseases. Results provide insight into the molecular response of dendritic cells to L. major infections.", "type": "Expression profiling by array", "pubmed_id": "24808365", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE42088", "order": "none", "update_date": "Jul 31 2014", "subsets": [ { "dataset_id": "GDS5086", "description": "uninfected", "sample_id": [ "GSM1032235", "GSM1032236", "GSM1032237" ], "type": "infection", "id": "GDS5086_1" }, { "dataset_id": "GDS5086", "description": "L. major", "sample_id": [ "GSM1032238", "GSM1032239", "GSM1032240", "GSM1032241", "GSM1032242", "GSM1032243", "GSM1032244", "GSM1032245", "GSM1032246", "GSM1032247", "GSM1032248", "GSM1032249" ], "type": "infection", "id": "GDS5086_2" }, { "dataset_id": "GDS5086", "description": "2 h", "sample_id": [ "GSM1032235", "GSM1032236", "GSM1032237", "GSM1032238", "GSM1032239", "GSM1032240" ], "type": "time", "id": "GDS5086_3" }, { "dataset_id": "GDS5086", "description": "4 h", "sample_id": [ "GSM1032241", "GSM1032242", "GSM1032243" ], "type": "time", "id": "GDS5086_4" }, { "dataset_id": "GDS5086", "description": "8 h", "sample_id": [ "GSM1032244", "GSM1032245", "GSM1032246" ], "type": "time", "id": "GDS5086_5" }, { "dataset_id": "GDS5086", "description": "24 h", "sample_id": [ "GSM1032247", "GSM1032248", "GSM1032249" ], "type": "time", "id": "GDS5086_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5086", "version": 1.0, "instances": "15", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5086.tab", "compression": "gz" } ], [ [ "GDS5087.tab" ], { "title": "Transcriptional regulator steroid receptor coactivator-2 deficiency effect on the heart", "description": "Analysis of hearts of mutants lacking transcriptional regulator steroid receptor coactivator-2 (SRC-2). Results provide insight into the role of SRC-2 in cardiac function.", "type": "Expression profiling by array", "pubmed_id": "23300926", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE41558", "order": "none", "update_date": "Jul 24 2014", "subsets": [ { "dataset_id": "GDS5087", "description": "wild type", "sample_id": [ "GSM1019090", "GSM1019091", "GSM1019092", "GSM1019093" ], "type": "genotype/variation", "id": "GDS5087_1" }, { "dataset_id": "GDS5087", "description": "SRC-2 null", "sample_id": [ "GSM1019094", "GSM1019095", "GSM1019096", "GSM1019097" ], "type": "genotype/variation", "id": "GDS5087_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5087", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5087.tab", "compression": "gz" } ], [ [ "GDS5088.tab" ], { "title": "First, second and third trimester pregnancy: maternal cell-free plasma", "description": "Analysis of cell-free plasma from pregnant women during the first, second, third trimesters and immediately post-partum. Results provide insight into a noninvasive means to monitor the expression status of many tissues and measure temporal expression of genes longitudinally during development.", "type": "Expression profiling by array", "pubmed_id": "24799715", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE56899", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5088", "description": "Non-Pregnant", "sample_id": [ "GSM1370906", "GSM1370907", "GSM1370908", "GSM1370909" ], "type": "development stage", "id": "GDS5088_1" }, { "dataset_id": "GDS5088", "description": "pregnancy_trimester 1", "sample_id": [ "GSM1370862", "GSM1370866", "GSM1370870", "GSM1370874", "GSM1370878", "GSM1370882", "GSM1370886", "GSM1370890", "GSM1370894", "GSM1370898", "GSM1370902" ], "type": "development stage", "id": "GDS5088_2" }, { "dataset_id": "GDS5088", "description": "pregnancy_trimester 2", "sample_id": [ "GSM1370863", "GSM1370867", "GSM1370871", "GSM1370875", "GSM1370879", "GSM1370883", "GSM1370887", "GSM1370891", "GSM1370895", "GSM1370899", "GSM1370903" ], "type": "development stage", "id": "GDS5088_3" }, { "dataset_id": "GDS5088", "description": "pregnancy_trimester 3", "sample_id": [ "GSM1370864", "GSM1370868", "GSM1370872", "GSM1370876", "GSM1370880", "GSM1370884", "GSM1370888", "GSM1370892", "GSM1370896", "GSM1370900", "GSM1370904" ], "type": "development stage", "id": "GDS5088_4" }, { "dataset_id": "GDS5088", "description": "Post-Partum", "sample_id": [ "GSM1370865", "GSM1370869", "GSM1370873", "GSM1370877", "GSM1370881", "GSM1370885", "GSM1370889", "GSM1370893", "GSM1370897", "GSM1370901", "GSM1370905" ], "type": "development stage", "id": "GDS5088_5" }, { "dataset_id": "GDS5088", "description": "subject 02", "sample_id": [ "GSM1370862", "GSM1370863", "GSM1370864", "GSM1370865" ], "type": "individual", "id": "GDS5088_6" }, { "dataset_id": "GDS5088", "description": "subject 12", "sample_id": [ "GSM1370866", "GSM1370867", "GSM1370868", "GSM1370869" ], "type": "individual", "id": "GDS5088_7" }, { "dataset_id": "GDS5088", "description": "subject 15", "sample_id": [ "GSM1370870", "GSM1370871", "GSM1370872", "GSM1370873" ], "type": "individual", "id": "GDS5088_8" }, { "dataset_id": "GDS5088", "description": "subject 16", "sample_id": [ "GSM1370874", "GSM1370875", "GSM1370876", "GSM1370877" ], "type": "individual", "id": "GDS5088_9" }, { "dataset_id": "GDS5088", "description": "subject 24", "sample_id": [ "GSM1370878", "GSM1370879", "GSM1370880", "GSM1370881" ], "type": "individual", "id": "GDS5088_10" }, { "dataset_id": "GDS5088", "description": "subject 32", "sample_id": [ "GSM1370882", "GSM1370883", "GSM1370884", "GSM1370885" ], "type": "individual", "id": "GDS5088_11" }, { "dataset_id": "GDS5088", "description": "subject 36", "sample_id": [ "GSM1370886", "GSM1370887", "GSM1370888", "GSM1370889" ], "type": "individual", "id": "GDS5088_12" }, { "dataset_id": "GDS5088", "description": "subject 53", "sample_id": [ "GSM1370890", "GSM1370891", "GSM1370892", "GSM1370893" ], "type": "individual", "id": "GDS5088_13" }, { "dataset_id": "GDS5088", "description": "subject 54", "sample_id": [ "GSM1370894", "GSM1370895", "GSM1370896", "GSM1370897" ], "type": "individual", "id": "GDS5088_14" }, { "dataset_id": "GDS5088", "description": "subject 58", "sample_id": [ "GSM1370898", "GSM1370899", "GSM1370900", "GSM1370901" ], "type": "individual", "id": "GDS5088_15" }, { "dataset_id": "GDS5088", "description": "subject 60", "sample_id": [ "GSM1370902", "GSM1370903", "GSM1370904", "GSM1370905" ], "type": "individual", "id": "GDS5088_16" }, { "dataset_id": "GDS5088", "description": "subject 1", "sample_id": [ "GSM1370906" ], "type": "individual", "id": "GDS5088_17" }, { "dataset_id": "GDS5088", "description": "subject 2", "sample_id": [ "GSM1370907" ], "type": "individual", "id": "GDS5088_18" }, { "dataset_id": "GDS5088", "description": "subject 3", "sample_id": [ "GSM1370908" ], "type": "individual", "id": "GDS5088_19" }, { "dataset_id": "GDS5088", "description": "subject 4", "sample_id": [ "GSM1370909" ], "type": "individual", "id": "GDS5088_20" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5088", "version": 1.0, "instances": "48", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5088.tab", "compression": "gz" } ], [ [ "GDS5089.tab" ], { "title": "Cystatin B knockout model of progressive myoclonus epilepsy: postnatal day 7 cerebellum", "description": "Analysis of cerebella from pre-symptomatic, postnatal day 7 cystatin B (CSTB)-deficient mice. Progressive myoclonus epilepsy of Unverricht-Lundborg type (EPM1) is a neurodegenerative disease caused by mutations in the CSTB gene. Results provide insight into the molecular basis of EPM1 pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24586687", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE47516", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5089", "description": "cystatin B knockout Cstb-/-", "sample_id": [ "GSM1151351", "GSM1151352", "GSM1151353", "GSM1151354" ], "type": "genotype/variation", "id": "GDS5089_1" }, { "dataset_id": "GDS5089", "description": "wild type", "sample_id": [ "GSM1151355", "GSM1151356", "GSM1151357", "GSM1151358" ], "type": "genotype/variation", "id": "GDS5089_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5089", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5089.tab", "compression": "gz" } ], [ [ "GDS509.tab" ], { "title": "Fracture healing timecourse and the effect of age", "description": "Temporal analysis of gene expression following femoral fracture. Female Sprague-Dawleys at 6 (young), 26 (adult) and 52 (older) weeks of age at time of fracture. Samples analyzed at 0, 3 days, 1, 2, 4, and 6 weeks after fracture.", "type": "Expression profiling by array", "pubmed_id": [ "15291962", "16894589", "17205564", "17260206" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE594", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS509", "description": "young - 6 weeks", "sample_id": [ "GSM9011", "GSM9023", "GSM9024", "GSM9025", "GSM9026", "GSM9027", "GSM9050", "GSM9051", "GSM9052", "GSM9053", "GSM9054", "GSM9055" ], "type": "age", "id": "GDS509_1" }, { "dataset_id": "GDS509", "description": "adult - 26 weeks", "sample_id": [ "GSM9028", "GSM9029", "GSM9030", "GSM9031", "GSM9032", "GSM9033", "GSM9056", "GSM9057", "GSM9058", "GSM9060", "GSM9061", "GSM9062" ], "type": "age", "id": "GDS509_2" }, { "dataset_id": "GDS509", "description": "older - 52 weeks", "sample_id": [ "GSM9034", "GSM9035", "GSM9036", "GSM9037", "GSM9038", "GSM9039", "GSM9063", "GSM9064", "GSM9065", "GSM9066", "GSM9067", "GSM9068" ], "type": "age", "id": "GDS509_3" }, { "dataset_id": "GDS509", "description": "pre-fracture", "sample_id": [ "GSM9011", "GSM9028", "GSM9034", "GSM9050", "GSM9056", "GSM9063" ], "type": "time", "id": "GDS509_4" }, { "dataset_id": "GDS509", "description": "3 days post_fracture", "sample_id": [ "GSM9023", "GSM9029", "GSM9035", "GSM9051", "GSM9057", "GSM9064" ], "type": "time", "id": "GDS509_5" }, { "dataset_id": "GDS509", "description": "1 week post_fracture", "sample_id": [ "GSM9024", "GSM9030", "GSM9036", "GSM9052", "GSM9058", "GSM9065" ], "type": "time", "id": "GDS509_6" }, { "dataset_id": "GDS509", "description": "2 week post_fracture", "sample_id": [ "GSM9025", "GSM9031", "GSM9037", "GSM9053", "GSM9060", "GSM9066" ], "type": "time", "id": "GDS509_7" }, { "dataset_id": "GDS509", "description": "4 week post_fracture", "sample_id": [ "GSM9026", "GSM9032", "GSM9038", "GSM9054", "GSM9061", "GSM9067" ], "type": "time", "id": "GDS509_8" }, { "dataset_id": "GDS509", "description": "6 week post_fracture", "sample_id": [ "GSM9027", "GSM9033", "GSM9039", "GSM9055", "GSM9062", "GSM9068" ], "type": "time", "id": "GDS509_9" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS509", "version": 1.0, "instances": "36", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS509.tab", "compression": "gz" } ], [ [ "GDS5090.tab" ], { "title": "Cystatin B knockout model of progressive myoclonus epilepsy: postnatal day 30 cerebellum", "description": "Analysis of cerebella from symptomatic, postnatal day 30 cystatin B (CSTB)-deficient mice. Progressive myoclonus epilepsy of Unverricht-Lundborg type (EPM1) is a neurodegenerative disease caused by mutations in the CSTB gene. Results provide insight into the molecular basis of EPM1 pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24586687", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE47516", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5090", "description": "cystatin B knockout Cstb-/-", "sample_id": [ "GSM1151359", "GSM1151360", "GSM1151361" ], "type": "genotype/variation", "id": "GDS5090_1" }, { "dataset_id": "GDS5090", "description": "wild type", "sample_id": [ "GSM1151362", "GSM1151363", "GSM1151364" ], "type": "genotype/variation", "id": "GDS5090_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5090", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5090.tab", "compression": "gz" } ], [ [ "GDS5091.tab" ], { "title": "Cystatin B knockout model of progressive myoclonus epilepsy: cultured cerebellar granule cells", "description": "Analysis of granule cells dissected from postnatal day 5 cystatin B (CSTB)-deficient mice and cultured for 2 days. Progressive myoclonus epilepsy Unverricht-Lundborg type (EPM1) is a neurodegenerative disease caused by CSTB gene mutations. Results provide insight into the molecular basis of EPM1.", "type": "Expression profiling by array", "pubmed_id": "24586687", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE47516", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5091", "description": "cystatin B knockout Cstb-/-", "sample_id": [ "GSM1151365", "GSM1151366", "GSM1151367" ], "type": "genotype/variation", "id": "GDS5091_1" }, { "dataset_id": "GDS5091", "description": "wild type", "sample_id": [ "GSM1151368", "GSM1151369", "GSM1151370", "GSM1151371" ], "type": "genotype/variation", "id": "GDS5091_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5091", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5091.tab", "compression": "gz" } ], [ [ "GDS5092.tab" ], { "title": "Embryonic fibroblast in vitro model of hypothermia: time course", "description": "Analysis of embryonic fibroblasts exposed in vitro to mild hypothermia (32\u00b0C) or normothermia (37\u00b0C) for up to 18 hrs. Hypothermia is a clinically effective therapy for various hypoxic and ischemic conditions. Results provide insight into molecular basis of the therapeutic effects of hypothermia.", "type": "Expression profiling by array", "pubmed_id": "24586062", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE54229", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5092", "description": "normothermia (37C)", "sample_id": [ "GSM1310500", "GSM1310501", "GSM1310502", "GSM1310503", "GSM1310504", "GSM1310505", "GSM1310506" ], "type": "stress", "id": "GDS5092_1" }, { "dataset_id": "GDS5092", "description": "hypothermia (32C)", "sample_id": [ "GSM1310507", "GSM1310508", "GSM1310509", "GSM1310510", "GSM1310511", "GSM1310512" ], "type": "stress", "id": "GDS5092_2" }, { "dataset_id": "GDS5092", "description": "hour 0", "sample_id": [ "GSM1310500" ], "type": "time", "id": "GDS5092_3" }, { "dataset_id": "GDS5092", "description": "hour 0.5", "sample_id": [ "GSM1310507", "GSM1310501" ], "type": "time", "id": "GDS5092_4" }, { "dataset_id": "GDS5092", "description": "hour 1", "sample_id": [ "GSM1310502", "GSM1310508" ], "type": "time", "id": "GDS5092_5" }, { "dataset_id": "GDS5092", "description": "hour 2", "sample_id": [ "GSM1310503", "GSM1310509" ], "type": "time", "id": "GDS5092_6" }, { "dataset_id": "GDS5092", "description": "hour 4", "sample_id": [ "GSM1310510", "GSM1310504" ], "type": "time", "id": "GDS5092_7" }, { "dataset_id": "GDS5092", "description": "hour 8", "sample_id": [ "GSM1310505", "GSM1310511" ], "type": "time", "id": "GDS5092_8" }, { "dataset_id": "GDS5092", "description": "hour 18", "sample_id": [ "GSM1310512", "GSM1310506" ], "type": "time", "id": "GDS5092_9" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5092", "version": 1.0, "instances": "13", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5092.tab", "compression": "gz" } ], [ [ "GDS5093.tab" ], { "title": "Acute Dengue patients: whole blood", "description": "Analysis of blood from patients with acute Dengue virus (DENV) infection and during convalescence. Dengue is a mosquito-borne infectious disease and Dengue Hemorrhagic Fever is a life-threatening illness. Results provide insight into molecular mechanisms underlying host response to DENV infection.", "type": "Expression profiling by array", "pubmed_id": "24981333", "platform": "GPL13158", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54715", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "56", "value_type": "transformed count", "reference_series": "GSE51808", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5093", "description": "Dengue virus", "sample_id": [ "GSM1253032", "GSM1253034", "GSM1253037", "GSM1253039", "GSM1253040", "GSM1253041", "GSM1253046", "GSM1253048", "GSM1253049", "GSM1253052", "GSM1253028", "GSM1253029", "GSM1253030", "GSM1253031", "GSM1253033", "GSM1253035", "GSM1253036", "GSM1253038", "GSM1253042", "GSM1253043", "GSM1253044", "GSM1253045", "GSM1253047", "GSM1253050", "GSM1253051", "GSM1253053", "GSM1253054", "GSM1253055", "GSM1253056", "GSM1253057", "GSM1253058", "GSM1253059", "GSM1253060", "GSM1253061", "GSM1253062", "GSM1253063", "GSM1253064", "GSM1253065", "GSM1253066", "GSM1253067", "GSM1253068", "GSM1253069", "GSM1253070", "GSM1253071", "GSM1253072", "GSM1253073", "GSM1253074" ], "type": "infection", "id": "GDS5093_1" }, { "dataset_id": "GDS5093", "description": "control", "sample_id": [ "GSM1253075", "GSM1253076", "GSM1253077", "GSM1253078", "GSM1253079", "GSM1253080", "GSM1253081", "GSM1253082", "GSM1253083" ], "type": "infection", "id": "GDS5093_2" }, { "dataset_id": "GDS5093", "description": "healthy control", "sample_id": [ "GSM1253082", "GSM1253080", "GSM1253081", "GSM1253078", "GSM1253076", "GSM1253077", "GSM1253075", "GSM1253083", "GSM1253079" ], "type": "disease state", "id": "GDS5093_3" }, { "dataset_id": "GDS5093", "description": "Convalescent", "sample_id": [ "GSM1253074", "GSM1253058", "GSM1253073", "GSM1253072", "GSM1253071", "GSM1253070", "GSM1253069", "GSM1253068", "GSM1253067", "GSM1253066", "GSM1253057", "GSM1253065", "GSM1253064", "GSM1253063", "GSM1253062", "GSM1253061", "GSM1253060", "GSM1253059", "GSM1253056" ], "type": "disease state", "id": "GDS5093_4" }, { "dataset_id": "GDS5093", "description": "Dengue Hemorrhagic Fever", "sample_id": [ "GSM1253037", "GSM1253052", "GSM1253049", "GSM1253048", "GSM1253046", "GSM1253041", "GSM1253040", "GSM1253039", "GSM1253034", "GSM1253032" ], "type": "disease state", "id": "GDS5093_5" }, { "dataset_id": "GDS5093", "description": "Dengue Fever", "sample_id": [ "GSM1253055", "GSM1253031", "GSM1253054", "GSM1253053", "GSM1253030", "GSM1253051", "GSM1253050", "GSM1253047", "GSM1253045", "GSM1253044", "GSM1253043", "GSM1253042", "GSM1253029", "GSM1253038", "GSM1253036", "GSM1253035", "GSM1253033", "GSM1253028" ], "type": "disease state", "id": "GDS5093_6" }, { "dataset_id": "GDS5093", "description": "patient 3", "sample_id": [ "GSM1253028", "GSM1253056" ], "type": "individual", "id": "GDS5093_7" }, { "dataset_id": "GDS5093", "description": "patient 4", "sample_id": [ "GSM1253057", "GSM1253029" ], "type": "individual", "id": "GDS5093_8" }, { "dataset_id": "GDS5093", "description": "patient 6", "sample_id": [ "GSM1253058", "GSM1253030" ], "type": "individual", "id": "GDS5093_9" }, { "dataset_id": "GDS5093", "description": "patient 7", "sample_id": [ "GSM1253031" ], "type": "individual", "id": "GDS5093_10" }, { "dataset_id": "GDS5093", "description": "patient 32", "sample_id": [ "GSM1253032" ], "type": "individual", "id": "GDS5093_11" }, { "dataset_id": "GDS5093", "description": "patient 33", "sample_id": [ "GSM1253059", "GSM1253033" ], "type": "individual", "id": "GDS5093_12" }, { "dataset_id": "GDS5093", "description": "patient 34", "sample_id": [ "GSM1253060", "GSM1253034" ], "type": "individual", "id": "GDS5093_13" }, { "dataset_id": "GDS5093", "description": "patient 35", "sample_id": [ "GSM1253035", "GSM1253061" ], "type": "individual", "id": "GDS5093_14" }, { "dataset_id": "GDS5093", "description": "patient 36", "sample_id": [ "GSM1253062", "GSM1253036" ], "type": "individual", "id": "GDS5093_15" }, { "dataset_id": "GDS5093", "description": "patient 37", "sample_id": [ "GSM1253063", "GSM1253038" ], "type": "individual", "id": "GDS5093_16" }, { "dataset_id": "GDS5093", "description": "patient 38", "sample_id": [ "GSM1253064", "GSM1253039" ], "type": "individual", "id": "GDS5093_17" }, { "dataset_id": "GDS5093", "description": "patient 39", "sample_id": [ "GSM1253065", "GSM1253040" ], "type": "individual", "id": "GDS5093_18" }, { "dataset_id": "GDS5093", "description": "patient 40", "sample_id": [ "GSM1253041" ], "type": "individual", "id": "GDS5093_19" }, { "dataset_id": "GDS5093", "description": "patient 41", "sample_id": [ "GSM1253066", "GSM1253042" ], "type": "individual", "id": "GDS5093_20" }, { "dataset_id": "GDS5093", "description": "patient 44", "sample_id": [ "GSM1253067", "GSM1253045" ], "type": "individual", "id": "GDS5093_21" }, { "dataset_id": "GDS5093", "description": "patient 42", "sample_id": [ "GSM1253043" ], "type": "individual", "id": "GDS5093_22" }, { "dataset_id": "GDS5093", "description": "patient 43", "sample_id": [ "GSM1253044" ], "type": "individual", "id": "GDS5093_23" }, { "dataset_id": "GDS5093", "description": "patient 45", "sample_id": [ "GSM1253068", "GSM1253046" ], "type": "individual", "id": "GDS5093_24" }, { "dataset_id": "GDS5093", "description": "patient 47", "sample_id": [ "GSM1253069", "GSM1253047" ], "type": "individual", "id": "GDS5093_25" }, { "dataset_id": "GDS5093", "description": "patient 48", "sample_id": [ "GSM1253070", "GSM1253048" ], "type": "individual", "id": "GDS5093_26" }, { "dataset_id": "GDS5093", "description": "patient 49", "sample_id": [ "GSM1253071", "GSM1253049" ], "type": "individual", "id": "GDS5093_27" }, { "dataset_id": "GDS5093", "description": "patient 54", "sample_id": [ "GSM1253072", "GSM1253050" ], "type": "individual", "id": "GDS5093_28" }, { "dataset_id": "GDS5093", "description": "patient 55", "sample_id": [ "GSM1253073", "GSM1253051" ], "type": "individual", "id": "GDS5093_29" }, { "dataset_id": "GDS5093", "description": "patient 60", "sample_id": [ "GSM1253052" ], "type": "individual", "id": "GDS5093_30" }, { "dataset_id": "GDS5093", "description": "patient 66", "sample_id": [ "GSM1253053" ], "type": "individual", "id": "GDS5093_31" }, { "dataset_id": "GDS5093", "description": "patient 68", "sample_id": [ "GSM1253054" ], "type": "individual", "id": "GDS5093_32" }, { "dataset_id": "GDS5093", "description": "patient 80", "sample_id": [ "GSM1253074", "GSM1253055" ], "type": "individual", "id": "GDS5093_33" }, { "dataset_id": "GDS5093", "description": "patient 81", "sample_id": [ "GSM1253037" ], "type": "individual", "id": "GDS5093_34" }, { "dataset_id": "GDS5093", "description": "c1", "sample_id": [ "GSM1253079" ], "type": "individual", "id": "GDS5093_35" }, { "dataset_id": "GDS5093", "description": "c2", "sample_id": [ "GSM1253083" ], "type": "individual", "id": "GDS5093_36" }, { "dataset_id": "GDS5093", "description": "c3", "sample_id": [ "GSM1253075" ], "type": "individual", "id": "GDS5093_37" }, { "dataset_id": "GDS5093", "description": "c4", "sample_id": [ "GSM1253077" ], "type": "individual", "id": "GDS5093_38" }, { "dataset_id": "GDS5093", "description": "c5", "sample_id": [ "GSM1253076" ], "type": "individual", "id": "GDS5093_39" }, { "dataset_id": "GDS5093", "description": "c6", "sample_id": [ "GSM1253078" ], "type": "individual", "id": "GDS5093_40" }, { "dataset_id": "GDS5093", "description": "c7", "sample_id": [ "GSM1253081" ], "type": "individual", "id": "GDS5093_41" }, { "dataset_id": "GDS5093", "description": "c8", "sample_id": [ "GSM1253080" ], "type": "individual", "id": "GDS5093_42" }, { "dataset_id": "GDS5093", "description": "c9", "sample_id": [ "GSM1253082" ], "type": "individual", "id": "GDS5093_43" } ], "taxid": "9606", "genes": 31654, "aggregation_function": "mean", "name": "GDS5093", "version": 1.0, "instances": "56", "variables": 31658, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5093.tab", "compression": "gz" } ], [ [ "GDS5094.tab" ], { "title": "Stearoyl-CoA desaturase 1 inhibition effect on clear cell renal cell carcinoma cell lines", "description": "Analysis of clear cell renal cell carcinoma (ccRCC) cells treated with A939572, a stearoyl-CoA desaturase 1 (SCD1) inhibitor. SCD1 is overexpressed in ccRCC.Results provide insight into the role of SCD1 in the pathogenesis of ccRCC.", "type": "Expression profiling by array", "pubmed_id": "23633458", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE41485", "order": "none", "update_date": "Jul 25 2014", "subsets": [ { "dataset_id": "GDS5094", "description": "ACHN", "sample_id": [ "GSM1018105", "GSM1018106" ], "type": "cell line", "id": "GDS5094_1" }, { "dataset_id": "GDS5094", "description": "A498", "sample_id": [ "GSM1018109", "GSM1018110" ], "type": "cell line", "id": "GDS5094_2" }, { "dataset_id": "GDS5094", "description": "CAKI1", "sample_id": [ "GSM1018111", "GSM1018112" ], "type": "cell line", "id": "GDS5094_3" }, { "dataset_id": "GDS5094", "description": "CAKI2", "sample_id": [ "GSM1018107", "GSM1018108" ], "type": "cell line", "id": "GDS5094_4" }, { "dataset_id": "GDS5094", "description": "DMSO", "sample_id": [ "GSM1018105", "GSM1018107", "GSM1018109", "GSM1018111" ], "type": "agent", "id": "GDS5094_5" }, { "dataset_id": "GDS5094", "description": "A939572", "sample_id": [ "GSM1018106", "GSM1018108", "GSM1018110", "GSM1018112" ], "type": "agent", "id": "GDS5094_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5094", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5094.tab", "compression": "gz" } ], [ [ "GDS5095.tab" ], { "title": "Transciption factor Meis1 deficiency effect on lineage-negative bone marrow cells", "description": "Analysis of lineage-negative bone marrow cells following in vitro deletion of the transcription factor Meis1. Meis1 is a member of the 3-amino acid loop extension family of homeodomain proteins. Results provide insight into the role of Meis1 in hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "23091297", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE41133", "order": "none", "update_date": "Jul 25 2014", "subsets": [ { "dataset_id": "GDS5095", "description": "Meis deletion", "sample_id": [ "GSM1009001", "GSM1009003" ], "type": "genotype/variation", "id": "GDS5095_1" }, { "dataset_id": "GDS5095", "description": "control", "sample_id": [ "GSM1009000", "GSM1009002" ], "type": "genotype/variation", "id": "GDS5095_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5095", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5095.tab", "compression": "gz" } ], [ [ "GDS5096.tab" ], { "title": "Lactobacillus brevis KB290 supplemented diet effect on the spleen: time course", "description": "Analysis of spleens of BALB/c animals fed a diet supplemented with Lactobacillus brevis KB290 for up to 14 days. L. brevis KB290 is a probiotic bacterial strain. Results provide insight into the probiotic effect of L. brevis KB290 on spleen cells at the molecular level.", "type": "Expression profiling by array", "pubmed_id": "23544404", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "transformed count", "reference_series": "GSE41127", "order": "none", "update_date": "Sep 17 2014", "subsets": [ { "dataset_id": "GDS5096", "description": "control diet", "sample_id": [ "GSM1200225", "GSM1200224", "GSM1200223", "GSM1200222", "GSM1200221", "GSM1200220", "GSM1200213", "GSM1200212", "GSM1200211", "GSM1200210", "GSM1200209", "GSM1200208", "GSM1200201", "GSM1200200", "GSM1200199", "GSM1200198", "GSM1200197", "GSM1200196", "GSM1200236", "GSM1200235", "GSM1200234", "GSM1200233", "GSM1200232", "GSM1200231" ], "type": "agent", "id": "GDS5096_1" }, { "dataset_id": "GDS5096", "description": "L. brevis KB290 supplemented diet", "sample_id": [ "GSM1200230", "GSM1200229", "GSM1200228", "GSM1200227", "GSM1200226", "GSM1200219", "GSM1200218", "GSM1200217", "GSM1200216", "GSM1200215", "GSM1200214", "GSM1200207", "GSM1200206", "GSM1200205", "GSM1200204", "GSM1200203", "GSM1200202", "GSM1200242", "GSM1200241", "GSM1200240", "GSM1200239", "GSM1200238", "GSM1200237" ], "type": "agent", "id": "GDS5096_2" }, { "dataset_id": "GDS5096", "description": "1 d", "sample_id": [ "GSM1200196", "GSM1200197", "GSM1200198", "GSM1200199", "GSM1200200", "GSM1200201", "GSM1200202", "GSM1200203", "GSM1200204", "GSM1200205", "GSM1200206", "GSM1200207" ], "type": "time", "id": "GDS5096_3" }, { "dataset_id": "GDS5096", "description": "4 d", "sample_id": [ "GSM1200208", "GSM1200209", "GSM1200210", "GSM1200211", "GSM1200212", "GSM1200213", "GSM1200214", "GSM1200215", "GSM1200216", "GSM1200217", "GSM1200218", "GSM1200219" ], "type": "time", "id": "GDS5096_4" }, { "dataset_id": "GDS5096", "description": "7 d", "sample_id": [ "GSM1200220", "GSM1200221", "GSM1200222", "GSM1200223", "GSM1200224", "GSM1200225", "GSM1200226", "GSM1200227", "GSM1200228", "GSM1200229", "GSM1200230" ], "type": "time", "id": "GDS5096_5" }, { "dataset_id": "GDS5096", "description": "14 d", "sample_id": [ "GSM1200231", "GSM1200232", "GSM1200233", "GSM1200234", "GSM1200235", "GSM1200236", "GSM1200237", "GSM1200238", "GSM1200239", "GSM1200240", "GSM1200241", "GSM1200242" ], "type": "time", "id": "GDS5096_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5096", "version": 1.0, "instances": "47", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5096.tab", "compression": "gz" } ], [ [ "GDS5097.tab" ], { "title": "Salmonella type III secretion effector SteA effect on epithelial cells", "description": "Analysis of HeLa epithelial cells stably-transfected with a SteA-3xFLAG fusion construct. Salmonella effector SteA is a substrate for both type III secretion systems which are essential for virulence. Results provide insight into the role of SteA during infections.", "type": "Expression profiling by array", "pubmed_id": "24858684", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE51043", "order": "none", "update_date": "Sep 17 2014", "subsets": [ { "dataset_id": "GDS5097", "description": "HeLa", "sample_id": [ "GSM1236481", "GSM1236482", "GSM1236483" ], "type": "cell line", "id": "GDS5097_1" }, { "dataset_id": "GDS5097", "description": "HeLa L2", "sample_id": [ "GSM1236484", "GSM1236485", "GSM1236486" ], "type": "cell line", "id": "GDS5097_2" }, { "dataset_id": "GDS5097", "description": "HeLa L4", "sample_id": [ "GSM1236487", "GSM1236488", "GSM1236489" ], "type": "cell line", "id": "GDS5097_3" }, { "dataset_id": "GDS5097", "description": "control", "sample_id": [ "GSM1236481", "GSM1236482", "GSM1236483" ], "type": "protocol", "id": "GDS5097_4" }, { "dataset_id": "GDS5097", "description": "steA transfected", "sample_id": [ "GSM1236484", "GSM1236485", "GSM1236486", "GSM1236487", "GSM1236488", "GSM1236489" ], "type": "protocol", "id": "GDS5097_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5097", "version": 1.0, "instances": "9", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5097.tab", "compression": "gz" } ], [ [ "GDS5098.tab" ], { "title": "E-cadherin and TGF\u03b2-receptor type II knockdown effect on esophageal organotypic cultures", "description": "Analysis of esophageal keratinocytes depleted for E-cadherin and TGFb receptor type II and grown on a collagen/Matrigel matrix with embedded fibroblasts. Loss of E-cadherin and TGFb receptor type II is common in esophageal cancer. Results provide insight into molecular basis of esophageal cancer.", "type": "Expression profiling by array", "pubmed_id": "23359139", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE19472", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5098", "description": "wild type E-cadherin", "sample_id": [ "GSM485224", "GSM485225" ], "type": "genotype/variation", "id": "GDS5098_1" }, { "dataset_id": "GDS5098", "description": "E-cadherin knockdown", "sample_id": [ "GSM485226", "GSM485227", "GSM485228", "GSM485229" ], "type": "genotype/variation", "id": "GDS5098_2" }, { "dataset_id": "GDS5098", "description": "E-cadherin and TGF\u03b2-RII knockdown", "sample_id": [ "GSM485230", "GSM485231", "GSM485232", "GSM485233" ], "type": "genotype/variation", "id": "GDS5098_3" }, { "dataset_id": "GDS5098", "description": "non-invading area", "sample_id": [ "GSM485225", "GSM485224", "GSM485232", "GSM485230", "GSM485228", "GSM485226" ], "type": "other", "id": "GDS5098_4" }, { "dataset_id": "GDS5098", "description": "invading area", "sample_id": [ "GSM485233", "GSM485231", "GSM485229", "GSM485227" ], "type": "other", "id": "GDS5098_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5098", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5098.tab", "compression": "gz" } ], [ [ "GDS5099.tab" ], { "title": "Pancreatic cancer-stellate cell organotypic cultures", "description": "Analysis of organotypic cultures constructed by seeding Capan1 pancreatic cancer cells on top of PS1 stromal pancreatic stellate cells embedded in a collagen/Matrigel matrix. PS1 cells are activated in pancreatic cancer. Results provide insight into the role of stromal cells in cancer progression.", "type": "Expression profiling by array", "pubmed_id": "23359139", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE36775", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5099", "description": "Capan1 pancreatic cancer cells exposed to PS1 stellate cells", "sample_id": [ "GSM900842", "GSM900843", "GSM900844" ], "type": "protocol", "id": "GDS5099_1" }, { "dataset_id": "GDS5099", "description": "Capan1 pancreatic cancer cells only", "sample_id": [ "GSM900845", "GSM900846", "GSM900847" ], "type": "protocol", "id": "GDS5099_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5099", "version": 1.0, "instances": "6", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5099.tab", "compression": "gz" } ], [ [ "GDS51.tab" ], { "title": "Cochlear hair cell line differentiation time course (Mu11K-B)", "description": "Gene expression profile of differentiation of inner ear hair cell precursors in vitro. A conditionally immortal cell line derived from the mouse cochlea, UB/OC-1, examined from 0 to 14 days.", "type": "Expression profiling by array", "pubmed_id": "12097346", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE36", "order": "ordered", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS51", "description": "0 day", "sample_id": [ "GSM1533", "GSM1545" ], "type": "time", "id": "GDS51_1" }, { "dataset_id": "GDS51", "description": "1 day", "sample_id": [ "GSM1534" ], "type": "time", "id": "GDS51_2" }, { "dataset_id": "GDS51", "description": "2 day", "sample_id": [ "GSM1535", "GSM1546" ], "type": "time", "id": "GDS51_3" }, { "dataset_id": "GDS51", "description": "3 day", "sample_id": [ "GSM1536" ], "type": "time", "id": "GDS51_4" }, { "dataset_id": "GDS51", "description": "4 day", "sample_id": [ "GSM1537", "GSM1547" ], "type": "time", "id": "GDS51_5" }, { "dataset_id": "GDS51", "description": "5 day", "sample_id": [ "GSM1538" ], "type": "time", "id": "GDS51_6" }, { "dataset_id": "GDS51", "description": "6 day", "sample_id": [ "GSM1539" ], "type": "time", "id": "GDS51_7" }, { "dataset_id": "GDS51", "description": "7 day", "sample_id": [ "GSM1540" ], "type": "time", "id": "GDS51_8" }, { "dataset_id": "GDS51", "description": "8 day", "sample_id": [ "GSM1541" ], "type": "time", "id": "GDS51_9" }, { "dataset_id": "GDS51", "description": "9 day", "sample_id": [ "GSM1542", "GSM1548" ], "type": "time", "id": "GDS51_10" }, { "dataset_id": "GDS51", "description": "11 day", "sample_id": [ "GSM1543" ], "type": "time", "id": "GDS51_11" }, { "dataset_id": "GDS51", "description": "14 day", "sample_id": [ "GSM1544" ], "type": "time", "id": "GDS51_12" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS51", "version": 1.0, "instances": "16", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS51.tab", "compression": "gz" } ], [ [ "GDS510.tab" ], { "title": "Multiple sclerosis and vitamin D", "description": "Examination of effect of 200 ng 1,25-dihydroxyvitamin D3 (1alpha,25-(OH)2D3) on B10.PL mice with severe (stage 2.5-3) experimental autoimmune encephalomyelitis (EAE), a model of multiple sclerosis (MS). Spinal cord tissue examined.", "type": "Expression profiling by array", "pubmed_id": "15138306", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE842", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS510", "description": "EAE", "sample_id": [ "GSM13048", "GSM13052", "GSM13053", "GSM13054", "GSM13055", "GSM13056" ], "type": "disease state", "id": "GDS510_1" }, { "dataset_id": "GDS510", "description": "control", "sample_id": [ "GSM13049", "GSM13050", "GSM13051" ], "type": "disease state", "id": "GDS510_2" }, { "dataset_id": "GDS510", "description": "1,25(OH)2D2", "sample_id": [ "GSM13053", "GSM13054", "GSM13055" ], "type": "agent", "id": "GDS510_3" }, { "dataset_id": "GDS510", "description": "placebo", "sample_id": [ "GSM13048", "GSM13052", "GSM13056" ], "type": "agent", "id": "GDS510_4" }, { "dataset_id": "GDS510", "description": "control", "sample_id": [ "GSM13049", "GSM13050", "GSM13051" ], "type": "agent", "id": "GDS510_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS510", "version": 1.0, "instances": "9", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS510.tab", "compression": "gz" } ], [ [ "GDS511.tab" ], { "title": "Postmortem skeletal muscle", "description": "Transcriptional profile of normal skeletal muscle collected at autopsy compared to surgical specimens.", "type": "Expression profiling by array", "pubmed_id": "14625377", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE595", "order": "none", "update_date": "Mar 18 2004", "subsets": [ { "dataset_id": "GDS511", "description": "postmortem", "sample_id": [ "GSM9131", "GSM9132", "GSM9133", "GSM9135", "GSM9136", "GSM9137", "GSM9141" ], "type": "specimen", "id": "GDS511_1" }, { "dataset_id": "GDS511", "description": "surgical", "sample_id": [ "GSM9128", "GSM9129", "GSM9130", "GSM9134", "GSM9138", "GSM9139", "GSM9140" ], "type": "specimen", "id": "GDS511_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS511", "version": 1.0, "instances": "14", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS511.tab", "compression": "gz" } ], [ [ "GDS5112.tab" ], { "title": "Heart response to Trypanosoma cruzi infection", "description": "Analysis of hearts of C57BL/6 animals infected with the intracellular parasite Trypanosoma cruzi. T. cruzi causes Chagas disease which can lead to cardiomyopathy. Results provide insight into the molecular mechanisms underlying the innate immune response in the heart to T. cruzi infections.", "type": "Expression profiling by array", "pubmed_id": "23966627", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE41089", "order": "none", "update_date": "Aug 29 2014", "subsets": [ { "dataset_id": "GDS5112", "description": "control", "sample_id": [ "GSM1008465", "GSM1008466", "GSM1008467" ], "type": "infection", "id": "GDS5112_1" }, { "dataset_id": "GDS5112", "description": "T. cruzi", "sample_id": [ "GSM1008462", "GSM1008463", "GSM1008464" ], "type": "infection", "id": "GDS5112_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5112", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5112.tab", "compression": "gz" } ], [ [ "GDS5113.tab" ], { "title": "Transcription factor Grainyhead-like 2 depletion effect on lung epithelial cell line", "description": "Analysis of MLE-15 lung epithelial cells depleted for Grainyhead-like 2. Results provide insight into the role of Grainyhead-like 2 in the morphogenesis and differentiation of lung epithelial cells.", "type": "Expression profiling by array", "pubmed_id": "22955271", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE40729", "order": "none", "update_date": "Aug 01 2014", "subsets": [ { "dataset_id": "GDS5113", "description": "Grainyhead-like 2 depletion", "sample_id": [ "GSM999831", "GSM999832", "GSM999833" ], "type": "protocol", "id": "GDS5113_1" }, { "dataset_id": "GDS5113", "description": "control", "sample_id": [ "GSM999834", "GSM999835" ], "type": "protocol", "id": "GDS5113_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5113", "version": 1.0, "instances": "5", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5113.tab", "compression": "gz" } ], [ [ "GDS5114.tab" ], { "title": "Wild type, postnatal day 7 motor neuron populations", "description": "Analysis of dorsolateral nucleus, oculomotor nucleus, and lumbar motor neurons isolated from wild-type, P7 males. In ALS, lumbar motor neurons are vulnerable to neurodegeneration. Results provide insight into the molecular characteristics contributing to selective neurodegeneration.", "type": "Expression profiling by array", "pubmed_id": "24462097", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE52118", "order": "none", "update_date": "May 17 2016", "subsets": [ { "dataset_id": "GDS5114", "description": "lumbar motor neurons", "sample_id": [ "GSM1259963", "GSM1259964", "GSM1259965" ], "type": "cell type", "id": "GDS5114_1" }, { "dataset_id": "GDS5114", "description": "oculomotor nucleus motor neurons", "sample_id": [ "GSM1259966", "GSM1259967", "GSM1259968" ], "type": "cell type", "id": "GDS5114_2" }, { "dataset_id": "GDS5114", "description": "dorsolateral nucleus motor neurons", "sample_id": [ "GSM1259969", "GSM1259970", "GSM1259971" ], "type": "cell type", "id": "GDS5114_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5114", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5114.tab", "compression": "gz" } ], [ [ "GDS513.tab" ], { "title": "Familial combined hyperlipidemia and USF1 haplotype", "description": "Comparison of subcutaneous adipose tissue from individuals with familial combined hyperlipidemia (FCHL) exhibiting either upstream transcription factor 1 (USF1) susceptibility or protective haplotype. USF1 regulates glucose and lipid metabolism genes.", "type": "Expression profiling by array", "pubmed_id": "14991056", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE590", "order": "none", "update_date": "Mar 18 2004", "subsets": [ { "dataset_id": "GDS513", "description": "USF1 susceptibility haplotype", "sample_id": [ "GSM9040", "GSM9041", "GSM9042", "GSM9043", "GSM9044", "GSM9045" ], "type": "genotype/variation", "id": "GDS513_1" }, { "dataset_id": "GDS513", "description": "USF1 protective haplotype", "sample_id": [ "GSM9046", "GSM9047", "GSM9048", "GSM9049" ], "type": "genotype/variation", "id": "GDS513_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS513", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS513.tab", "compression": "gz" } ], [ [ "GDS514.tab" ], { "title": "Autoimmune disease and Nrf2", "description": "Analysis of spleen and liver tissue of 5 month old male and female transcription factor nuclear factor E2-related factor 2 (Nrf2) double knockouts. Nrf2-deficient female mice develop lupus-like autoimmune nephritis.", "type": "Expression profiling by array", "pubmed_id": "15173550", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE867", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS514", "description": "liver", "sample_id": [ "GSM13431", "GSM13435", "GSM13436", "GSM13437", "GSM13438", "GSM13439", "GSM13440", "GSM13441" ], "type": "tissue", "id": "GDS514_1" }, { "dataset_id": "GDS514", "description": "spleen", "sample_id": [ "GSM13467", "GSM13469", "GSM13470", "GSM13472" ], "type": "tissue", "id": "GDS514_2" }, { "dataset_id": "GDS514", "description": "Nrf2 knockout", "sample_id": [ "GSM13436", "GSM13437", "GSM13438", "GSM13440", "GSM13467", "GSM13469" ], "type": "genotype/variation", "id": "GDS514_3" }, { "dataset_id": "GDS514", "description": "wild type", "sample_id": [ "GSM13431", "GSM13435", "GSM13439", "GSM13441", "GSM13470", "GSM13472" ], "type": "genotype/variation", "id": "GDS514_4" }, { "dataset_id": "GDS514", "description": "female", "sample_id": [ "GSM13431", "GSM13435", "GSM13436", "GSM13437", "GSM13467", "GSM13469", "GSM13470", "GSM13472" ], "type": "gender", "id": "GDS514_5" }, { "dataset_id": "GDS514", "description": "male", "sample_id": [ "GSM13438", "GSM13439", "GSM13440", "GSM13441" ], "type": "gender", "id": "GDS514_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS514", "version": 1.0, "instances": "12", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS514.tab", "compression": "gz" } ], [ [ "GDS5140.tab" ], { "title": "Neuro2a neuroblastoma cell lines: anchorage dependent cells and anchorage independent tumorspheres", "description": "Analysis of two reversible phenotypes of neuroblastoma Neuro2a: proliferative anchorage dependent (AD) cells and slow growing anoikis-resistant anchorage independent (AI) cells. Results provide insight into the molecular mechanisms underlying reversible phenotypic transition in neuroblastoma.", "type": "Expression profiling by array", "pubmed_id": "24376712", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE45160", "order": "none", "update_date": "Sep 22 2014", "subsets": [ { "dataset_id": "GDS5140", "description": "anchorage dependent", "sample_id": [ "GSM1098396", "GSM1098397", "GSM1098398", "GSM1098399" ], "type": "cell type", "id": "GDS5140_1" }, { "dataset_id": "GDS5140", "description": "anoikis resistant anchorage independent", "sample_id": [ "GSM1098400", "GSM1098401", "GSM1098402", "GSM1098403" ], "type": "cell type", "id": "GDS5140_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5140", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5140.tab", "compression": "gz" } ], [ [ "GDS515.tab" ], { "title": "LEAFY transcription factor targets", "description": "Analysis of gene expression in 9 day old LEAFY-GR, 35S::LFY or Landsberg erecta seedlings treated with dexamethasone and/or cycloheximide identifies LFY targets which likely initiate changes required for vegetative to reproductive switch.", "type": "Expression profiling by array", "pubmed_id": "14736918", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE911", "order": "none", "update_date": "Mar 19 2004", "subsets": [ { "dataset_id": "GDS515", "description": "LEAFY-GR", "sample_id": [ "GSM13778", "GSM13779", "GSM13780", "GSM13781", "GSM13782", "GSM13783", "GSM13784", "GSM13785" ], "type": "genotype/variation", "id": "GDS515_1" }, { "dataset_id": "GDS515", "description": "35S::LFY", "sample_id": [ "GSM13789", "GSM13792" ], "type": "genotype/variation", "id": "GDS515_2" }, { "dataset_id": "GDS515", "description": "wild-type (Ler)", "sample_id": [ "GSM13791", "GSM13793" ], "type": "genotype/variation", "id": "GDS515_3" }, { "dataset_id": "GDS515", "description": "dexamethasone", "sample_id": [ "GSM13778", "GSM13782" ], "type": "protocol", "id": "GDS515_4" }, { "dataset_id": "GDS515", "description": "dexamethasone and cycloheximide", "sample_id": [ "GSM13779", "GSM13783" ], "type": "protocol", "id": "GDS515_5" }, { "dataset_id": "GDS515", "description": "cycloheximide", "sample_id": [ "GSM13780", "GSM13784" ], "type": "protocol", "id": "GDS515_6" }, { "dataset_id": "GDS515", "description": "mock", "sample_id": [ "GSM13781", "GSM13785" ], "type": "protocol", "id": "GDS515_7" }, { "dataset_id": "GDS515", "description": "untreated", "sample_id": [ "GSM13789", "GSM13791", "GSM13792", "GSM13793" ], "type": "protocol", "id": "GDS515_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS515", "version": 1.0, "instances": "12", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS515.tab", "compression": "gz" } ], [ [ "GDS5154.tab" ], { "title": "FAT1 depletion effect on astrocyte and glioma cell lines", "description": "Analysis of astrocyte and glioma cells depleted for FAT1. FAT1 encodes a cadherin-like protein. Results provide insight into the role of FAT1 in cancer development.", "type": "Expression profiling by array", "pubmed_id": "23354438", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE40583", "order": "none", "update_date": "Aug 25 2014", "subsets": [ { "dataset_id": "GDS5154", "description": "IHA", "sample_id": [ "GSM997175", "GSM997176", "GSM997183", "GSM997188", "GSM997189", "GSM997190" ], "type": "cell line", "id": "GDS5154_1" }, { "dataset_id": "GDS5154", "description": "U87", "sample_id": [ "GSM997191", "GSM997192", "GSM997193", "GSM997194", "GSM997195", "GSM997196" ], "type": "cell line", "id": "GDS5154_2" }, { "dataset_id": "GDS5154", "description": "U251", "sample_id": [ "GSM997197", "GSM997198", "GSM997199", "GSM997200", "GSM997201", "GSM997202" ], "type": "cell line", "id": "GDS5154_3" }, { "dataset_id": "GDS5154", "description": "control", "sample_id": [ "GSM997175", "GSM997176", "GSM997191", "GSM997192", "GSM997197", "GSM997198" ], "type": "protocol", "id": "GDS5154_4" }, { "dataset_id": "GDS5154", "description": "FAT1 depletion", "sample_id": [ "GSM997183", "GSM997188", "GSM997189", "GSM997190", "GSM997193", "GSM997194", "GSM997195", "GSM997196", "GSM997199", "GSM997200", "GSM997201", "GSM997202" ], "type": "protocol", "id": "GDS5154_5" }, { "dataset_id": "GDS5154", "description": "astrocyte", "sample_id": [ "GSM997175", "GSM997176", "GSM997183", "GSM997188", "GSM997189", "GSM997190" ], "type": "cell type", "id": "GDS5154_6" }, { "dataset_id": "GDS5154", "description": "glioma", "sample_id": [ "GSM997191", "GSM997192", "GSM997193", "GSM997194", "GSM997195", "GSM997196", "GSM997197", "GSM997198", "GSM997199", "GSM997200", "GSM997201", "GSM997202" ], "type": "cell type", "id": "GDS5154_7" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5154", "version": 1.0, "instances": "18", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5154.tab", "compression": "gz" } ], [ [ "GDS5157.tab" ], { "title": "Auditory fear conditioning effect on amygdala: time course", "description": "Analysis of bilateral amygdala up to 2 hrs after auditory fear conditioning. Neurons within the centromedial amygdala are proposed to modulate fear memories. Results provide insight into molecular pathways mediating fear memory in the amygdala.", "type": "Expression profiling by array", "pubmed_id": "24976214", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE57465", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5157", "description": "control", "sample_id": [ "GSM1383172", "GSM1383173", "GSM1383174", "GSM1383175" ], "type": "time", "id": "GDS5157_1" }, { "dataset_id": "GDS5157", "description": "hour 0.5", "sample_id": [ "GSM1383168", "GSM1383169", "GSM1383170", "GSM1383171" ], "type": "time", "id": "GDS5157_2" }, { "dataset_id": "GDS5157", "description": "hour 2", "sample_id": [ "GSM1383164", "GSM1383165", "GSM1383166", "GSM1383167" ], "type": "time", "id": "GDS5157_3" }, { "dataset_id": "GDS5157", "description": "home cage control", "sample_id": [ "GSM1383172", "GSM1383173", "GSM1383174", "GSM1383175" ], "type": "protocol", "id": "GDS5157_4" }, { "dataset_id": "GDS5157", "description": "auditory fear conditioning", "sample_id": [ "GSM1383164", "GSM1383165", "GSM1383166", "GSM1383167", "GSM1383168", "GSM1383169", "GSM1383170", "GSM1383171" ], "type": "protocol", "id": "GDS5157_5" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5157", "version": 1.0, "instances": "12", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5157.tab", "compression": "gz" } ], [ [ "GDS5158.tab" ], { "title": "Ethanol effect on differentiated H1 embryonic stem cells", "description": "Analysis of H1 embryonic stem cells differentiated into neural rosettes and neural progenitor cells in the presence of 20mM EtOH. Results provide insight into the molecular effects of EtOH during neural differentiation of embryonic stem cells.", "type": "Expression profiling by array", "pubmed_id": "25089259", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE56906", "order": "none", "update_date": "Nov 03 2014", "subsets": [ { "dataset_id": "GDS5158", "description": "differentiated neural rosettes", "sample_id": [ "GSM1371025", "GSM1371026", "GSM1371027", "GSM1371028" ], "type": "cell type", "id": "GDS5158_1" }, { "dataset_id": "GDS5158", "description": "differentiated neural progenitor cells", "sample_id": [ "GSM1371031", "GSM1371032", "GSM1371033", "GSM1371034" ], "type": "cell type", "id": "GDS5158_2" }, { "dataset_id": "GDS5158", "description": "undifferentiated H1 hESC parent", "sample_id": [ "GSM1371029", "GSM1371030" ], "type": "cell type", "id": "GDS5158_3" }, { "dataset_id": "GDS5158", "description": "control", "sample_id": [ "GSM1371025", "GSM1371026", "GSM1371031", "GSM1371032", "GSM1371029", "GSM1371030" ], "type": "agent", "id": "GDS5158_4" }, { "dataset_id": "GDS5158", "description": "EtOH", "sample_id": [ "GSM1371027", "GSM1371028", "GSM1371033", "GSM1371034" ], "type": "agent", "id": "GDS5158_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5158", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5158.tab", "compression": "gz" } ], [ [ "GDS5159.tab" ], { "title": "Lung response to highly virulent or low virulent influenza A H3N2 virus infection: time course", "description": "Analysis of total lung from BALB/c females infected with highly virulent influenza A (HVI) or low virulent influenza A (LVI), up to 96 hrs following infection. Results provide insight into the molecular mechanisms underlying the host pulmonary responses to HVI and LVI infections.", "type": "Expression profiling by array", "pubmed_id": "21874528", "platform": "GPL6103", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24613", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE55994", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5159", "description": "mock", "sample_id": [ "GSM1349996", "GSM1350000", "GSM1350020", "GSM1350021", "GSM1350009", "GSM1350011" ], "type": "infection", "id": "GDS5159_1" }, { "dataset_id": "GDS5159", "description": "low virulent influenza A", "sample_id": [ "GSM1350002", "GSM1350003", "GSM1350022", "GSM1350023", "GSM1350013", "GSM1350015" ], "type": "infection", "id": "GDS5159_2" }, { "dataset_id": "GDS5159", "description": "highly virulent influenza A", "sample_id": [ "GSM1350005", "GSM1350007", "GSM1350024", "GSM1350025", "GSM1350017", "GSM1350019" ], "type": "infection", "id": "GDS5159_3" }, { "dataset_id": "GDS5159", "description": "12 hours", "sample_id": [ "GSM1350009", "GSM1350011", "GSM1350013", "GSM1350015", "GSM1350017", "GSM1350019" ], "type": "time", "id": "GDS5159_4" }, { "dataset_id": "GDS5159", "description": "48 hours", "sample_id": [ "GSM1350020", "GSM1350021", "GSM1350022", "GSM1350023", "GSM1350024", "GSM1350025" ], "type": "time", "id": "GDS5159_5" }, { "dataset_id": "GDS5159", "description": "96 hours", "sample_id": [ "GSM1349996", "GSM1350000", "GSM1350002", "GSM1350003", "GSM1350005", "GSM1350007" ], "type": "time", "id": "GDS5159_6" } ], "taxid": "10090", "genes": 19378, "aggregation_function": "mean", "name": "GDS5159", "version": 1.0, "instances": "18", "variables": 19381, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5159.tab", "compression": "gz" } ], [ [ "GDS516.tab" ], { "title": "Diet study: yeast effect time course", "description": "Temporal analysis of gene expression in response to nutrition factors. Yeast-fed and yeast-restricted adults sampled at 12 hourly intervals. Genes and networks regulating insulin ligand and receptor activity characterized.", "type": "Expression profiling by array", "pubmed_id": "17090700", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE562", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS516", "description": "baseline", "sample_id": [ "GSM8537", "GSM8538", "GSM8539", "GSM8540" ], "type": "growth protocol", "id": "GDS516_1" }, { "dataset_id": "GDS516", "description": "yeast", "sample_id": [ "GSM8542", "GSM8544", "GSM8546", "GSM8547", "GSM8549", "GSM8551", "GSM8553", "GSM8554", "GSM8556", "GSM8558", "GSM8560", "GSM8562" ], "type": "growth protocol", "id": "GDS516_2" }, { "dataset_id": "GDS516", "description": "no yeast", "sample_id": [ "GSM8541", "GSM8543", "GSM8545", "GSM8548", "GSM8550", "GSM8552", "GSM8555", "GSM8557", "GSM8559", "GSM8561" ], "type": "growth protocol", "id": "GDS516_3" }, { "dataset_id": "GDS516", "description": "baseline", "sample_id": [ "GSM8537", "GSM8538", "GSM8539", "GSM8540" ], "type": "time", "id": "GDS516_4" }, { "dataset_id": "GDS516", "description": "1 h", "sample_id": [ "GSM8541", "GSM8542" ], "type": "time", "id": "GDS516_5" }, { "dataset_id": "GDS516", "description": "2 h", "sample_id": [ "GSM8543", "GSM8544" ], "type": "time", "id": "GDS516_6" }, { "dataset_id": "GDS516", "description": "3 h", "sample_id": [ "GSM8545", "GSM8546" ], "type": "time", "id": "GDS516_7" }, { "dataset_id": "GDS516", "description": "4 h", "sample_id": [ "GSM8547" ], "type": "time", "id": "GDS516_8" }, { "dataset_id": "GDS516", "description": "5 h", "sample_id": [ "GSM8548", "GSM8549" ], "type": "time", "id": "GDS516_9" }, { "dataset_id": "GDS516", "description": "6 h", "sample_id": [ "GSM8550", "GSM8551" ], "type": "time", "id": "GDS516_10" }, { "dataset_id": "GDS516", "description": "7 h", "sample_id": [ "GSM8552", "GSM8553" ], "type": "time", "id": "GDS516_11" }, { "dataset_id": "GDS516", "description": "8 h", "sample_id": [ "GSM8554" ], "type": "time", "id": "GDS516_12" }, { "dataset_id": "GDS516", "description": "9 h", "sample_id": [ "GSM8555", "GSM8556" ], "type": "time", "id": "GDS516_13" }, { "dataset_id": "GDS516", "description": "10 h", "sample_id": [ "GSM8557", "GSM8558" ], "type": "time", "id": "GDS516_14" }, { "dataset_id": "GDS516", "description": "11 h", "sample_id": [ "GSM8559", "GSM8560" ], "type": "time", "id": "GDS516_15" }, { "dataset_id": "GDS516", "description": "12 h", "sample_id": [ "GSM8561", "GSM8562" ], "type": "time", "id": "GDS516_16" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS516", "version": 1.0, "instances": "26", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS516.tab", "compression": "gz" } ], [ [ "GDS5161.tab" ], { "title": "Bcl6 deficiency effect on regulatory T cell", "description": "Analysis of CD4+CD25+Foxp3+ regulatory T cells from mutants deficient for the transcriptional repressor Bcl6. Results provide insight into the role of Bcl6 in regulatory T cell function.", "type": "Expression profiling by array", "pubmed_id": "23053511", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE40493", "order": "none", "update_date": "Aug 26 2014", "subsets": [ { "dataset_id": "GDS5161", "description": "wild type", "sample_id": [ "GSM995225", "GSM995226", "GSM995227", "GSM995228" ], "type": "genotype/variation", "id": "GDS5161_1" }, { "dataset_id": "GDS5161", "description": "Bcl6 null", "sample_id": [ "GSM995221", "GSM995222", "GSM995223", "GSM995224" ], "type": "genotype/variation", "id": "GDS5161_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5161", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5161.tab", "compression": "gz" } ], [ [ "GDS5164.tab" ], { "title": "GATA-3 deficiency effect on regulatory T cell", "description": "Analysis of regulatory T (Treg) cells from mutants deficient for the transcription factor GATA-3. GATA-3 forms a complex with the transcription factor Fox3p, essential in the function of Treg cells. Results provide insight into the role of GATA-3 in the regulation of the Treg transcriptome.", "type": "Expression profiling by array", "pubmed_id": "22922362", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE39864", "order": "none", "update_date": "Aug 26 2014", "subsets": [ { "dataset_id": "GDS5164", "description": "wild type", "sample_id": [ "GSM980505", "GSM980506", "GSM980507" ], "type": "genotype/variation", "id": "GDS5164_1" }, { "dataset_id": "GDS5164", "description": "GATA-3 null", "sample_id": [ "GSM980508", "GSM980509", "GSM980510" ], "type": "genotype/variation", "id": "GDS5164_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5164", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5164.tab", "compression": "gz" } ], [ [ "GDS5166.tab" ], { "title": "In vitro-differentiated CD4+ T helper cell subsets", "description": "Analysis of naive CD4+ T cells stimulated with anti-CD3 and anti-CD28 antibodies in the absence of exogenous cytokines (Th0 cells), or differentiated with IL-27 plus TGF-\u03b2 (Tr-1 cells) or with IL-6 plus TGF-\u03b2 (Th17 cells). Results provide insight into the molecular bases of the T cell subsets.", "type": "Expression profiling by array", "pubmed_id": "24796719", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE56021", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5166", "description": "Th0 cells", "sample_id": [ "GSM1350487", "GSM1350488", "GSM1350489", "GSM1350490", "GSM1350491" ], "type": "cell type", "id": "GDS5166_1" }, { "dataset_id": "GDS5166", "description": "Th17 cells", "sample_id": [ "GSM1350492", "GSM1350493", "GSM1350494", "GSM1350495", "GSM1350496" ], "type": "cell type", "id": "GDS5166_2" }, { "dataset_id": "GDS5166", "description": "Tr1 cells", "sample_id": [ "GSM1350497", "GSM1350498", "GSM1350499", "GSM1350500", "GSM1350501" ], "type": "cell type", "id": "GDS5166_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5166", "version": 1.0, "instances": "15", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5166.tab", "compression": "gz" } ], [ [ "GDS5167.tab" ], { "title": "Type 2 diabetic obese patients: visceral adipose tissue CD14+ cells", "description": "Analysis of visceral adipose tissue CD14+ cells isolated from obese, type 2 diabetic patients. Obesity is marked by changes in the immune cell composition of adipose tissue. Results provide insight into the molecular basis of proinflammatory cytokine production in obesity-linked type 2 diabetes.", "type": "Expression profiling by array", "pubmed_id": "24520123", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE54350", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5167", "description": "obese diabetic", "sample_id": [ "GSM1313607", "GSM1313609", "GSM1313610", "GSM1313611", "GSM1313616", "GSM1313618" ], "type": "disease state", "id": "GDS5167_1" }, { "dataset_id": "GDS5167", "description": "obese non-diabetic", "sample_id": [ "GSM1313608", "GSM1313612", "GSM1313613", "GSM1313614", "GSM1313615", "GSM1313617" ], "type": "disease state", "id": "GDS5167_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5167", "version": 1.0, "instances": "12", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5167.tab", "compression": "gz" } ], [ [ "GDS517.tab" ], { "title": "YODA MAPKK kinase characterization", "description": "Comparison of gene expression in vegetative rosettes of wild type and yda-2 (YODA MAPKK kinase) plants. YODA promotes extra-embryonic cell fates in basal lineage. Results suggest YODA is involved with a novel developmental signal transduction pathway.", "type": "Expression profiling by array", "pubmed_id": "14718171", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE919", "order": "none", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS517", "description": "yda-2", "sample_id": [ "GSM13775", "GSM13777", "GSM13787", "GSM13790" ], "type": "genotype/variation", "id": "GDS517_1" }, { "dataset_id": "GDS517", "description": "wild type", "sample_id": [ "GSM13774", "GSM13776", "GSM13786", "GSM13788" ], "type": "genotype/variation", "id": "GDS517_2" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS517", "version": 1.0, "instances": "8", "variables": 7547, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS517.tab", "compression": "gz" } ], [ [ "GDS5171.tab" ], { "title": "Supraclavicular and subcutaneous adipose tissue progenitor cells", "description": "Analysis of progenitor cells isolated from paired biopsies of deep neck and subcutaneous neck adipose tissue from patients undergoing neck surgery. Results provide insight into the molecular mechanisms underlying the differences between white and brown progenitor cells.", "type": "Expression profiling by array", "pubmed_id": "25102227", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE54280", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5171", "description": "subcutaneous progenitor", "sample_id": [ "GSM1311794", "GSM1311792", "GSM1311790", "GSM1311788", "GSM1311786", "GSM1311784" ], "type": "cell type", "id": "GDS5171_1" }, { "dataset_id": "GDS5171", "description": "deep neck progenitor", "sample_id": [ "GSM1311793", "GSM1311791", "GSM1311789", "GSM1311787", "GSM1311785", "GSM1311783" ], "type": "cell type", "id": "GDS5171_2" }, { "dataset_id": "GDS5171", "description": "patient 1", "sample_id": [ "GSM1311783", "GSM1311784" ], "type": "individual", "id": "GDS5171_3" }, { "dataset_id": "GDS5171", "description": "patient 2", "sample_id": [ "GSM1311785", "GSM1311786" ], "type": "individual", "id": "GDS5171_4" }, { "dataset_id": "GDS5171", "description": "patient 3", "sample_id": [ "GSM1311787", "GSM1311788" ], "type": "individual", "id": "GDS5171_5" }, { "dataset_id": "GDS5171", "description": "patient 4", "sample_id": [ "GSM1311789", "GSM1311790" ], "type": "individual", "id": "GDS5171_6" }, { "dataset_id": "GDS5171", "description": "patient 5", "sample_id": [ "GSM1311791", "GSM1311792" ], "type": "individual", "id": "GDS5171_7" }, { "dataset_id": "GDS5171", "description": "patient 6", "sample_id": [ "GSM1311793", "GSM1311794" ], "type": "individual", "id": "GDS5171_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5171", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5171.tab", "compression": "gz" } ], [ [ "GDS5172.tab" ], { "title": "Small-molecule inhibition of BRDT effect on testis", "description": "Analysis of testes from animals treated with JQ1, a small-molecule inhibitor of the testis-specific bromodomain-containing protein BRDT. BRDT is essential for spermatogenesis. Results provide insight into the molecular consequences of BRDT inhibition by JQ1.", "type": "Expression profiling by array", "pubmed_id": "22901802", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE37894", "order": "none", "update_date": "Aug 28 2014", "subsets": [ { "dataset_id": "GDS5172", "description": "control", "sample_id": [ "GSM929626", "GSM929627", "GSM929629" ], "type": "agent", "id": "GDS5172_1" }, { "dataset_id": "GDS5172", "description": "JQ1", "sample_id": [ "GSM929628", "GSM929630", "GSM929631" ], "type": "agent", "id": "GDS5172_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5172", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5172.tab", "compression": "gz" } ], [ [ "GDS5173.tab" ], { "title": "G-protein coupled receptor kinase 3 expression effect on prostate cancer cell line", "description": "Analysis of PC3 prostate cancer cells expressing G-protein coupled receptor kinase 3 (GRK3). Results provide insight into the role of GRK3 in prostate cancer progression and metastasis.", "type": "Expression profiling by array", "pubmed_id": "24434559", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE36022", "order": "none", "update_date": "Aug 28 2014", "subsets": [ { "dataset_id": "GDS5173", "description": "control", "sample_id": [ "GSM879451", "GSM879452", "GSM879453" ], "type": "agent", "id": "GDS5173_1" }, { "dataset_id": "GDS5173", "description": "GRK3", "sample_id": [ "GSM879454", "GSM879455", "GSM879456" ], "type": "agent", "id": "GDS5173_2" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS5173", "version": 1.0, "instances": "6", "variables": 19337, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5173.tab", "compression": "gz" } ], [ [ "GDS5176.tab" ], { "title": "Epidermis at various time points during the day", "description": "Analysis of epidermal samples from 20 individuals obtained at 9:30 am, 2:30 pm and 7:30 pm. Results identify transcripts that exhibit time-dependent expression in the epidermis.", "type": "Expression profiling by array", "pubmed_id": "22711835", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "57", "value_type": "transformed count", "reference_series": "GSE35635", "order": "none", "update_date": "Sep 03 2014", "subsets": [ { "dataset_id": "GDS5176", "description": "9:30 am", "sample_id": [ "GSM872244", "GSM872245", "GSM872246", "GSM872247", "GSM872248", "GSM872249", "GSM872250", "GSM872251", "GSM872252", "GSM872253", "GSM872254", "GSM872255", "GSM872256", "GSM872257", "GSM872258", "GSM872259", "GSM872260", "GSM872261", "GSM872262" ], "type": "time", "id": "GDS5176_1" }, { "dataset_id": "GDS5176", "description": "2:30 pm", "sample_id": [ "GSM872263", "GSM872264", "GSM872265", "GSM872266", "GSM872267", "GSM872268", "GSM872269", "GSM872270", "GSM872271", "GSM872272", "GSM872273", "GSM872274", "GSM872275", "GSM872276", "GSM872277", "GSM872278", "GSM872279", "GSM872280", "GSM872281" ], "type": "time", "id": "GDS5176_2" }, { "dataset_id": "GDS5176", "description": "7:30 pm", "sample_id": [ "GSM872282", "GSM872283", "GSM872284", "GSM872285", "GSM872286", "GSM872287", "GSM872288", "GSM872289", "GSM872290", "GSM872291", "GSM872292", "GSM872293", "GSM872294", "GSM872295", "GSM872296", "GSM872297", "GSM872298", "GSM872299", "GSM872300" ], "type": "time", "id": "GDS5176_3" }, { "dataset_id": "GDS5176", "description": "subject 1", "sample_id": [ "GSM872244", "GSM872263", "GSM872282" ], "type": "individual", "id": "GDS5176_4" }, { "dataset_id": "GDS5176", "description": "subject 2", "sample_id": [ "GSM872245", "GSM872264", "GSM872283" ], "type": "individual", "id": "GDS5176_5" }, { "dataset_id": "GDS5176", "description": "subject 3", "sample_id": [ "GSM872246", "GSM872265", "GSM872284" ], "type": "individual", "id": "GDS5176_6" }, { "dataset_id": "GDS5176", "description": "subject 4", "sample_id": [ "GSM872247", "GSM872266", "GSM872285" ], "type": "individual", "id": "GDS5176_7" }, { "dataset_id": "GDS5176", "description": "subject 5", "sample_id": [ "GSM872248", "GSM872267", "GSM872286" ], "type": "individual", "id": "GDS5176_8" }, { "dataset_id": "GDS5176", "description": "subject 6", "sample_id": [ "GSM872249", "GSM872268", "GSM872287" ], "type": "individual", "id": "GDS5176_9" }, { "dataset_id": "GDS5176", "description": "subject 7", "sample_id": [ "GSM872250", "GSM872269", "GSM872288" ], "type": "individual", "id": "GDS5176_10" }, { "dataset_id": "GDS5176", "description": "subject 8", "sample_id": [ "GSM872251", "GSM872270", "GSM872289" ], "type": "individual", "id": "GDS5176_11" }, { "dataset_id": "GDS5176", "description": "subject 9", "sample_id": [ "GSM872252", "GSM872271", "GSM872290" ], "type": "individual", "id": "GDS5176_12" }, { "dataset_id": "GDS5176", "description": "subject 10", "sample_id": [ "GSM872253", "GSM872272", "GSM872291" ], "type": "individual", "id": "GDS5176_13" }, { "dataset_id": "GDS5176", "description": "subject 11", "sample_id": [ "GSM872254", "GSM872292" ], "type": "individual", "id": "GDS5176_14" }, { "dataset_id": "GDS5176", "description": "subject 12", "sample_id": [ "GSM872255", "GSM872273", "GSM872293" ], "type": "individual", "id": "GDS5176_15" }, { "dataset_id": "GDS5176", "description": "subject 13", "sample_id": [ "GSM872256", "GSM872274", "GSM872294" ], "type": "individual", "id": "GDS5176_16" }, { "dataset_id": "GDS5176", "description": "subject 14", "sample_id": [ "GSM872257", "GSM872275", "GSM872295" ], "type": "individual", "id": "GDS5176_17" }, { "dataset_id": "GDS5176", "description": "subject 15", "sample_id": [ "GSM872258", "GSM872276", "GSM872296" ], "type": "individual", "id": "GDS5176_18" }, { "dataset_id": "GDS5176", "description": "subject 16", "sample_id": [ "GSM872259", "GSM872277", "GSM872297" ], "type": "individual", "id": "GDS5176_19" }, { "dataset_id": "GDS5176", "description": "subject 17", "sample_id": [ "GSM872260", "GSM872278", "GSM872298" ], "type": "individual", "id": "GDS5176_20" }, { "dataset_id": "GDS5176", "description": "subject 18", "sample_id": [ "GSM872261", "GSM872279", "GSM872299" ], "type": "individual", "id": "GDS5176_21" }, { "dataset_id": "GDS5176", "description": "subject 19", "sample_id": [ "GSM872280" ], "type": "individual", "id": "GDS5176_22" }, { "dataset_id": "GDS5176", "description": "subject 20", "sample_id": [ "GSM872262", "GSM872281", "GSM872300" ], "type": "individual", "id": "GDS5176_23" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5176", "version": 1.0, "instances": "57", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5176.tab", "compression": "gz" } ], [ [ "GDS5177.tab" ], { "title": "Kruppel-like factor 9 overexpression effect on keratinocyte: time course", "description": "Analysis of primary neonatal foreskin keratinocytes overexpressing Kruppel-like factor 9 (KLF9) for up to 7 days. KLF9 is a transcription factor that binds to GC box elements. Results identify downstream targets of KLF9.", "type": "Expression profiling by array", "pubmed_id": "22711835", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE36014", "order": "none", "update_date": "Sep 03 2014", "subsets": [ { "dataset_id": "GDS5177", "description": "2 d", "sample_id": [ "GSM879341", "GSM879344" ], "type": "time", "id": "GDS5177_1" }, { "dataset_id": "GDS5177", "description": "4 d", "sample_id": [ "GSM879342", "GSM879345" ], "type": "time", "id": "GDS5177_2" }, { "dataset_id": "GDS5177", "description": "7 d", "sample_id": [ "GSM879343", "GSM879346" ], "type": "time", "id": "GDS5177_3" }, { "dataset_id": "GDS5177", "description": "KLF9 overexpression", "sample_id": [ "GSM879344", "GSM879345", "GSM879346" ], "type": "protocol", "id": "GDS5177_4" }, { "dataset_id": "GDS5177", "description": "control", "sample_id": [ "GSM879341", "GSM879342", "GSM879343" ], "type": "protocol", "id": "GDS5177_5" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5177", "version": 1.0, "instances": "6", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5177.tab", "compression": "gz" } ], [ [ "GDS5178.tab" ], { "title": "Pre-B cell colony enhancing factor depletion effect on pulmonary microvascular endothelial cell", "description": "Analysis of pulmonary microvascular endothelial cells depleted for pre-B cell colony enhancing factor (PBEF). Results provide insight into the role of PBEF in the endothelium.", "type": "Expression profiling by array", "pubmed_id": "22487217", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE34512", "order": "none", "update_date": "Sep 05 2014", "subsets": [ { "dataset_id": "GDS5178", "description": "PBEF knockdown", "sample_id": [ "GSM850408", "GSM850409", "GSM850410" ], "type": "protocol", "id": "GDS5178_1" }, { "dataset_id": "GDS5178", "description": "control", "sample_id": [ "GSM850411", "GSM850412", "GSM850413" ], "type": "protocol", "id": "GDS5178_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5178", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5178.tab", "compression": "gz" } ], [ [ "GDS5179.tab" ], { "title": "Cadmium effect on liver cell line: dose response", "description": "Analysis of HepG2 liver cells treated with 2 or 10 uM cadmium. Cadmium is an environmental toxicant. Results provide insight into the molecular basis of cadmium toxicity.", "type": "Expression profiling by array", "pubmed_id": "22562489", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE31286", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5179", "description": "untreated", "sample_id": [ "GSM775321", "GSM775322", "GSM775323" ], "type": "agent", "id": "GDS5179_1" }, { "dataset_id": "GDS5179", "description": "cadmium", "sample_id": [ "GSM775324", "GSM775325", "GSM775326", "GSM775327", "GSM775328", "GSM775329" ], "type": "agent", "id": "GDS5179_2" }, { "dataset_id": "GDS5179", "description": "control", "sample_id": [ "GSM775321", "GSM775322", "GSM775323" ], "type": "dose", "id": "GDS5179_3" }, { "dataset_id": "GDS5179", "description": "2 uM", "sample_id": [ "GSM775324", "GSM775325", "GSM775326" ], "type": "dose", "id": "GDS5179_4" }, { "dataset_id": "GDS5179", "description": "10 uM", "sample_id": [ "GSM775327", "GSM775328", "GSM775329" ], "type": "dose", "id": "GDS5179_5" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5179", "version": 1.0, "instances": "9", "variables": 29584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5179.tab", "compression": "gz" } ], [ [ "GDS518.tab" ], { "title": "Hepatocarcinogenesis induced by clofibric acid", "description": "Analysis of mechanisms of clofibric acid (CLO) induced hepatocarcinogenesis. Whole liver and early pre-neoplastic foci isolated by laser capture microdissection (LCM) examined.", "type": "Expression profiling by array", "pubmed_id": "14633594", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE691", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS518", "description": "untreated", "sample_id": [ "GSM10825", "GSM10826", "GSM10827", "GSM10828", "GSM10829", "GSM10830", "GSM10831", "GSM10832", "GSM10847", "GSM10848", "GSM10849", "GSM10850", "GSM10851", "GSM10852", "GSM10853", "GSM10854", "GSM10867", "GSM10870", "GSM10873", "GSM10874" ], "type": "agent", "id": "GDS518_1" }, { "dataset_id": "GDS518", "description": "clofibric acid", "sample_id": [ "GSM10833", "GSM10834", "GSM10835", "GSM10836", "GSM10837", "GSM10838", "GSM10839", "GSM10840", "GSM10841", "GSM10842", "GSM10843", "GSM10844", "GSM10845", "GSM10846", "GSM10855", "GSM10856", "GSM10857", "GSM10858", "GSM10859", "GSM10860", "GSM10861", "GSM10862", "GSM10863", "GSM10864", "GSM10865", "GSM10866", "GSM10868", "GSM10869", "GSM10871", "GSM10872", "GSM10875", "GSM10876" ], "type": "agent", "id": "GDS518_2" }, { "dataset_id": "GDS518", "description": "N/A", "sample_id": [ "GSM10825", "GSM10826", "GSM10827", "GSM10828", "GSM10829", "GSM10830", "GSM10831", "GSM10832", "GSM10847", "GSM10848", "GSM10849", "GSM10850", "GSM10851", "GSM10852", "GSM10853", "GSM10854", "GSM10867", "GSM10870", "GSM10873", "GSM10874" ], "type": "dose", "id": "GDS518_3" }, { "dataset_id": "GDS518", "description": "0.29 pcent", "sample_id": [ "GSM10833", "GSM10834", "GSM10835", "GSM10836", "GSM10837", "GSM10838", "GSM10839", "GSM10840", "GSM10855", "GSM10856", "GSM10857", "GSM10858", "GSM10859", "GSM10860", "GSM10861", "GSM10868", "GSM10871", "GSM10875" ], "type": "dose", "id": "GDS518_4" }, { "dataset_id": "GDS518", "description": "0.54 pcent", "sample_id": [ "GSM10841", "GSM10842", "GSM10843", "GSM10844", "GSM10845", "GSM10846", "GSM10862", "GSM10863", "GSM10864", "GSM10865", "GSM10866", "GSM10869", "GSM10872", "GSM10876" ], "type": "dose", "id": "GDS518_5" }, { "dataset_id": "GDS518", "description": "whole liver", "sample_id": [ "GSM10825", "GSM10826", "GSM10827", "GSM10828", "GSM10829", "GSM10830", "GSM10831", "GSM10832", "GSM10833", "GSM10834", "GSM10835", "GSM10836", "GSM10837", "GSM10838", "GSM10839", "GSM10840", "GSM10841", "GSM10842", "GSM10843", "GSM10844", "GSM10845", "GSM10846" ], "type": "cell type", "id": "GDS518_6" }, { "dataset_id": "GDS518", "description": "stained liver", "sample_id": [ "GSM10847", "GSM10848", "GSM10849", "GSM10850", "GSM10851", "GSM10852", "GSM10853", "GSM10854", "GSM10855", "GSM10856", "GSM10857", "GSM10858", "GSM10859", "GSM10860", "GSM10861", "GSM10862", "GSM10863", "GSM10864", "GSM10865", "GSM10866" ], "type": "cell type", "id": "GDS518_7" }, { "dataset_id": "GDS518", "description": "dehydrated liver", "sample_id": [ "GSM10867", "GSM10868", "GSM10869" ], "type": "cell type", "id": "GDS518_8" }, { "dataset_id": "GDS518", "description": "LCM time reference liver", "sample_id": [ "GSM10870", "GSM10871", "GSM10872" ], "type": "cell type", "id": "GDS518_9" }, { "dataset_id": "GDS518", "description": "microdissected liver", "sample_id": [ "GSM10873", "GSM10874", "GSM10875", "GSM10876" ], "type": "cell type", "id": "GDS518_10" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS518", "version": 1.0, "instances": "52", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS518.tab", "compression": "gz" } ], [ [ "GDS5180.tab" ], { "title": "B-cell leukemia/lymphoma 11B overexpression effect on brain striatal cells in vitro", "description": "Analysis of cultured brain striatal cells overexpressing the B-cell leukemia/lymphoma 11B (Bcl11b) gene. Bcl11b encodes a zinc finger protein. Results provide insight into the function of Bcl11b in striatal cells.", "type": "Expression profiling by array", "pubmed_id": "21912641", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE31096", "order": "none", "update_date": "Sep 05 2014", "subsets": [ { "dataset_id": "GDS5180", "description": "control", "sample_id": [ "GSM769940", "GSM769941", "GSM769942", "GSM769943" ], "type": "protocol", "id": "GDS5180_1" }, { "dataset_id": "GDS5180", "description": "Bcl11b overexpression", "sample_id": [ "GSM769944", "GSM769945", "GSM769946", "GSM769947" ], "type": "protocol", "id": "GDS5180_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5180", "version": 1.0, "instances": "8", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5180.tab", "compression": "gz" } ], [ [ "GDS5181.tab" ], { "title": "Glioma: platelets", "description": "Analysis of platelets from glioma patients. Results identify a gene expression signature for glioma.", "type": "Expression profiling by array", "pubmed_id": "21832279", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE31095", "order": "none", "update_date": "Sep 08 2014", "subsets": [ { "dataset_id": "GDS5181", "description": "control", "sample_id": [ "GSM769920", "GSM769921", "GSM769922", "GSM769923", "GSM769924", "GSM769925", "GSM769926", "GSM769927", "GSM769928", "GSM769929", "GSM769930", "GSM769931" ], "type": "disease state", "id": "GDS5181_1" }, { "dataset_id": "GDS5181", "description": "glioma", "sample_id": [ "GSM769932", "GSM769933", "GSM769934", "GSM769935", "GSM769936", "GSM769937", "GSM769938", "GSM769939" ], "type": "disease state", "id": "GDS5181_2" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5181", "version": 1.0, "instances": "20", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5181.tab", "compression": "gz" } ], [ [ "GDS5182.tab" ], { "title": "Caspase-8 defieciency effect on intestinal epithelial cells", "description": "Analysis of intestinal epithelial cells from animals with an intestinal epithelium specific deletion of caspase-8, a cysteine protease involved in regulating cellular apoptosis. Results provide insight into the role of caspase-8 in the intestinal epithelium.", "type": "Expression profiling by array", "pubmed_id": "21921917", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE30873", "order": "none", "update_date": "Sep 08 2014", "subsets": [ { "dataset_id": "GDS5182", "description": "control", "sample_id": [ "GSM765922", "GSM765923", "GSM765924" ], "type": "genotype/variation", "id": "GDS5182_1" }, { "dataset_id": "GDS5182", "description": "caspase-8 deficient", "sample_id": [ "GSM765925", "GSM765926", "GSM765927" ], "type": "genotype/variation", "id": "GDS5182_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5182", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5182.tab", "compression": "gz" } ], [ [ "GDS5183.tab" ], { "title": "Adaptor protein ASC deficiency effect on bone marrow dendritic cells", "description": "Analysis of bone marrow dendritic cells of animals lacking ASC, an adaptor protein that contributes to innate immunity via the assembly of inflammasome complexes. Results provide insight into the inflammasome-independent role of ASC in regulating the antigen presenting function of dendritic cells.", "type": "Expression profiling by array", "pubmed_id": "21892172", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE30769", "order": "none", "update_date": "Sep 08 2014", "subsets": [ { "dataset_id": "GDS5183", "description": "wild type", "sample_id": [ "GSM763516", "GSM763517", "GSM763518" ], "type": "genotype/variation", "id": "GDS5183_1" }, { "dataset_id": "GDS5183", "description": "ASC null", "sample_id": [ "GSM763519", "GSM763520", "GSM763521" ], "type": "genotype/variation", "id": "GDS5183_2" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5183", "version": 1.0, "instances": "6", "variables": 31812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5183.tab", "compression": "gz" } ], [ [ "GDS5184.tab" ], { "title": "Focal adhesion kinase deficient fibroblast response to endothelin-1", "description": "Analysis of fibroblasts lacking focal adhesion kinase (FAK) following treatment with endothelin-1 (ET-1). FAK deficient fibroblasts isolated from mutant embryos. ET-1 is a profibrotic factor. Results provide insight into the role of FAK in fibrogenesis.", "type": "Expression profiling by array", "pubmed_id": "22492165", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE30356", "order": "none", "update_date": "Sep 09 2014", "subsets": [ { "dataset_id": "GDS5184", "description": "wild type", "sample_id": [ "GSM753451", "GSM753453" ], "type": "genotype/variation", "id": "GDS5184_1" }, { "dataset_id": "GDS5184", "description": "FAK null", "sample_id": [ "GSM753450", "GSM753452" ], "type": "genotype/variation", "id": "GDS5184_2" }, { "dataset_id": "GDS5184", "description": "control", "sample_id": [ "GSM753452", "GSM753453" ], "type": "agent", "id": "GDS5184_3" }, { "dataset_id": "GDS5184", "description": "endothelin-1", "sample_id": [ "GSM753450", "GSM753451" ], "type": "agent", "id": "GDS5184_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5184", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5184.tab", "compression": "gz" } ], [ [ "GDS5185.tab" ], { "title": "Wig-1 depletion effect on brain striatum of mutant huntingtin transgenic animal", "description": "Analysis of brain striata of BACHD animals depleted for the transcription factor wig-1. BACHD, a model for Huntington\u2019s disease, harbors the human mutant huntingtin gene. Results provide insight into the molecular pathways affected by wig-1 depletion in the BACHD striatum.", "type": "Expression profiling by array", "pubmed_id": "22347364", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE29751", "order": "none", "update_date": "Sep 09 2014", "subsets": [ { "dataset_id": "GDS5185", "description": "Wig-1 depletion", "sample_id": [ "GSM737540", "GSM737541", "GSM737542", "GSM737543" ], "type": "protocol", "id": "GDS5185_1" }, { "dataset_id": "GDS5185", "description": "negative control", "sample_id": [ "GSM737544", "GSM737545", "GSM737546", "GSM737547" ], "type": "protocol", "id": "GDS5185_2" }, { "dataset_id": "GDS5185", "description": "vehicle control", "sample_id": [ "GSM737536", "GSM737537", "GSM737538", "GSM737539" ], "type": "protocol", "id": "GDS5185_3" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5185", "version": 1.0, "instances": "12", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5185.tab", "compression": "gz" } ], [ [ "GDS5186.tab" ], { "title": "Ruptured intracranial aneurysms", "description": "Analysis of aneurysmal domes from ruptured intracranial aneurysms (RIAs). RIA causes subarachnoid hemorrhage associated with high morbidity and mortality. Results provides insight into molecular mechanisms that predispose to the rupture of IAs.", "type": "Expression profiling by array", "pubmed_id": "24938844", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "transformed count", "reference_series": "GSE54083", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5186", "description": "ruptured intracranial aneurysm", "sample_id": [ "GSM1306885", "GSM1306886", "GSM1306887", "GSM1306888", "GSM1306889", "GSM1306890", "GSM1306891", "GSM1306892" ], "type": "tissue", "id": "GDS5186_1" }, { "dataset_id": "GDS5186", "description": "unruptured intracranial aneurysm", "sample_id": [ "GSM1306893", "GSM1306894", "GSM1306895", "GSM1306896", "GSM1306897" ], "type": "tissue", "id": "GDS5186_2" }, { "dataset_id": "GDS5186", "description": "superficial temporal artery", "sample_id": [ "GSM1306898", "GSM1306899", "GSM1306900", "GSM1306901", "GSM1306902", "GSM1306903", "GSM1306904", "GSM1306905", "GSM1306906", "GSM1306907" ], "type": "tissue", "id": "GDS5186_3" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5186", "version": 1.0, "instances": "23", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5186.tab", "compression": "gz" } ], [ [ "GDS5187.tab" ], { "title": "Nitric oxide synthase-2 depletion effect on glioma stem cell", "description": "Analysis of glioma stem cells depleted for nitric oxide synthase-2 (NOS2). Glioma stem cells isolated from two different human glioma xenografts. NOS2 catalyzes the formation of nitric oxide. Results provide insight into the role of NOS2 in glioma stem cell profileration and tumor growth.", "type": "Expression profiling by array", "pubmed_id": "21729780", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE29750", "order": "none", "update_date": "Sep 09 2014", "subsets": [ { "dataset_id": "GDS5187", "description": "xenograft T3359", "sample_id": [ "GSM737524", "GSM737526", "GSM737528", "GSM737530", "GSM737532", "GSM737534" ], "type": "specimen", "id": "GDS5187_1" }, { "dataset_id": "GDS5187", "description": "xenograft T3691", "sample_id": [ "GSM737525", "GSM737527", "GSM737529", "GSM737531", "GSM737533", "GSM737535" ], "type": "specimen", "id": "GDS5187_2" }, { "dataset_id": "GDS5187", "description": "control", "sample_id": [ "GSM737524", "GSM737525", "GSM737530", "GSM737531" ], "type": "agent", "id": "GDS5187_3" }, { "dataset_id": "GDS5187", "description": "NOS2 shRNA 1", "sample_id": [ "GSM737526", "GSM737527", "GSM737532", "GSM737533" ], "type": "agent", "id": "GDS5187_4" }, { "dataset_id": "GDS5187", "description": "NOS2 shRNA 2", "sample_id": [ "GSM737528", "GSM737529", "GSM737534", "GSM737535" ], "type": "agent", "id": "GDS5187_5" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS5187", "version": 1.0, "instances": "12", "variables": 39534, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5187.tab", "compression": "gz" } ], [ [ "GDS5188.tab" ], { "title": "Glycogen synthase kinase 3 inhibitor effect on retinal explant cultures from 129 and C57BL/6 strains", "description": "Analysis of damaged retinal tissues cultured for 3 days with GSK3 inhibitor (GSK3i). GSK3i treatment enhanced the proliferation of M\u00fcller glia in 129 but not in B6 retinas. Results provide insight into molecular mechanisms underlying the proliferative potential of M\u00fcller glia after retinal damage.", "type": "Expression profiling by array", "pubmed_id": "24747725", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE54056", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5188", "description": "129X1/SvJJmsSlc", "sample_id": [ "GSM1306539", "GSM1306540", "GSM1306537", "GSM1306538", "GSM1306535", "GSM1306536" ], "type": "strain", "id": "GDS5188_1" }, { "dataset_id": "GDS5188", "description": "C57BL/6NCrSlc", "sample_id": [ "GSM1306533", "GSM1306534", "GSM1306531", "GSM1306532", "GSM1306529", "GSM1306530" ], "type": "strain", "id": "GDS5188_2" }, { "dataset_id": "GDS5188", "description": "intact whole retina", "sample_id": [ "GSM1306530", "GSM1306529", "GSM1306536", "GSM1306535" ], "type": "protocol", "id": "GDS5188_3" }, { "dataset_id": "GDS5188", "description": "retinal explant cultured 3 days", "sample_id": [ "GSM1306532", "GSM1306531", "GSM1306538", "GSM1306537" ], "type": "protocol", "id": "GDS5188_4" }, { "dataset_id": "GDS5188", "description": "retinal explant + GSK3 inhibitor Chir99021 cultured 3 days", "sample_id": [ "GSM1306534", "GSM1306533", "GSM1306540", "GSM1306539" ], "type": "protocol", "id": "GDS5188_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5188", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5188.tab", "compression": "gz" } ], [ [ "GDS5189.tab" ], { "title": "LAMP3 depleted cell line response to interferon-alpha: time course", "description": "Analysis of LAMP3 depleted HeLa cells following treatment with interferon-alpha for 3 or 4 days. Results provide insight into the role of LAMP3 in the immune response mediated by interferon-alpha.", "type": "Expression profiling by array", "pubmed_id": "23651994", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29009", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5189", "description": "control", "sample_id": [ "GSM718740", "GSM718741", "GSM718742", "GSM718743" ], "type": "protocol", "id": "GDS5189_1" }, { "dataset_id": "GDS5189", "description": "LAMP3 depletion", "sample_id": [ "GSM718736", "GSM718737", "GSM718738", "GSM718739" ], "type": "protocol", "id": "GDS5189_2" }, { "dataset_id": "GDS5189", "description": "3 d", "sample_id": [ "GSM718736", "GSM718737", "GSM718740", "GSM718741" ], "type": "time", "id": "GDS5189_3" }, { "dataset_id": "GDS5189", "description": "4 d", "sample_id": [ "GSM718738", "GSM718739", "GSM718742", "GSM718743" ], "type": "time", "id": "GDS5189_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5189", "version": 1.0, "instances": "8", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5189.tab", "compression": "gz" } ], [ [ "GDS519.tab" ], { "title": "Astrocyte response to beta amyloid peptide 25-35", "description": "Temporal analysis of cortical type I astrocytes cultured on beta amyloid peptide 25-35 fragment (bAP(25-35)). Samples examined at 12 hours, 1, 3, and 5 days. Amyloid plaques of Alzheimer's disease are composed of beta amyloid.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL88", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "1322", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE856", "order": "ordered", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS519", "description": "0", "sample_id": [ "GSM13332", "GSM13333", "GSM13334", "GSM13335", "GSM13336", "GSM13374" ], "type": "time", "id": "GDS519_1" }, { "dataset_id": "GDS519", "description": "12 h", "sample_id": [ "GSM13337", "GSM13338", "GSM13339" ], "type": "time", "id": "GDS519_2" }, { "dataset_id": "GDS519", "description": "1 d", "sample_id": [ "GSM13368", "GSM13369", "GSM13370" ], "type": "time", "id": "GDS519_3" }, { "dataset_id": "GDS519", "description": "3 d", "sample_id": [ "GSM13371", "GSM13372", "GSM13373" ], "type": "time", "id": "GDS519_4" }, { "dataset_id": "GDS519", "description": "5 d", "sample_id": [ "GSM13340", "GSM13341", "GSM13342" ], "type": "time", "id": "GDS519_5" } ], "taxid": "10116", "genes": 800, "aggregation_function": "mean", "name": "GDS519", "version": 1.0, "instances": "18", "variables": 802, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS519.tab", "compression": "gz" } ], [ [ "GDS5190.tab" ], { "title": "Ileocecal epithelial cell line response to Clostridium difficile toxins A and B: time course", "description": "Analysis of HCT-8 ileocecal cells treated with Clostridium difficile toxin A or B for up to 24 hours. C. difficile, a gram-positive, spore-forming anaerobe, causes infections leading to pseudomembranous colitis. Results provide insight into the role of toxins A and B in C. difficile infections.", "type": "Expression profiling by array", "pubmed_id": "22225989", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE29008", "order": "none", "update_date": "Sep 09 2014", "subsets": [ { "dataset_id": "GDS5190", "description": "untreated", "sample_id": [ "GSM718715", "GSM718716", "GSM718721", "GSM718722", "GSM718729", "GSM718730" ], "type": "agent", "id": "GDS5190_1" }, { "dataset_id": "GDS5190", "description": "toxin A", "sample_id": [ "GSM718731", "GSM718732", "GSM718717", "GSM718718", "GSM718723", "GSM718724", "GSM718725" ], "type": "agent", "id": "GDS5190_2" }, { "dataset_id": "GDS5190", "description": "toxin B", "sample_id": [ "GSM718733", "GSM718734", "GSM718719", "GSM718720", "GSM718726", "GSM718727", "GSM718728" ], "type": "agent", "id": "GDS5190_3" }, { "dataset_id": "GDS5190", "description": "2 h", "sample_id": [ "GSM718715", "GSM718716", "GSM718719", "GSM718720", "GSM718717", "GSM718718" ], "type": "time", "id": "GDS5190_4" }, { "dataset_id": "GDS5190", "description": "6 h", "sample_id": [ "GSM718721", "GSM718722", "GSM718726", "GSM718727", "GSM718728", "GSM718723", "GSM718724", "GSM718725" ], "type": "time", "id": "GDS5190_5" }, { "dataset_id": "GDS5190", "description": "24 h", "sample_id": [ "GSM718729", "GSM718730", "GSM718733", "GSM718734", "GSM718731", "GSM718732" ], "type": "time", "id": "GDS5190_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5190", "version": 1.0, "instances": "20", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5190.tab", "compression": "gz" } ], [ [ "GDS5191.tab" ], { "title": "Egr-1 overexpression effect on skin fibroblasts in vitro: time course", "description": "Analysis of cultured skin fibroblasts overexpressing Egr-1 for 24 and 48 hs. Egr-1 is a zinc finger transcription factor whose expression is induced by TGF-\u00df. Results provide insight into gene targets of Egr-1 and are compared to results of fibroblasts overexpressing TGF-\u00df (GDS5192).", "type": "Expression profiling by array", "pubmed_id": "21931594", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE27165", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5191", "description": "control", "sample_id": [ "GSM671486", "GSM671487", "GSM671488", "GSM671489" ], "type": "protocol", "id": "GDS5191_1" }, { "dataset_id": "GDS5191", "description": "Egr-1 overexpression", "sample_id": [ "GSM671490", "GSM671491", "GSM671492", "GSM671493" ], "type": "protocol", "id": "GDS5191_2" }, { "dataset_id": "GDS5191", "description": "24 h", "sample_id": [ "GSM671486", "GSM671487", "GSM671490", "GSM671491" ], "type": "time", "id": "GDS5191_3" }, { "dataset_id": "GDS5191", "description": "48 h", "sample_id": [ "GSM671488", "GSM671489", "GSM671492", "GSM671493" ], "type": "time", "id": "GDS5191_4" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS5191", "version": 1.0, "instances": "8", "variables": 18870, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5191.tab", "compression": "gz" } ], [ [ "GDS5192.tab" ], { "title": "TGF-beta overexpression effect on skin fibroblasts in vitro: time course", "description": "Analysis of cultured skin fibroblasts overexpressing TGF-\u00df for 24 and 48 hrs. Results compared to fibroblasts overexpressing Egr-1 (GDS5191). Egr-1 is a zinc finger transcription factor whose expression is induced by TGF-\u00df. Results examine overlapping Egr-1- and TGF-\u00df-regulated gene signatures.", "type": "Expression profiling by array", "pubmed_id": "21931594", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE27165", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5192", "description": "control", "sample_id": [ "GSM671486", "GSM671487", "GSM671488", "GSM671489" ], "type": "protocol", "id": "GDS5192_1" }, { "dataset_id": "GDS5192", "description": "TGF-beta overexpression", "sample_id": [ "GSM671494", "GSM671495", "GSM671496", "GSM671497" ], "type": "protocol", "id": "GDS5192_2" }, { "dataset_id": "GDS5192", "description": "24 h", "sample_id": [ "GSM671486", "GSM671487", "GSM671494", "GSM671495" ], "type": "time", "id": "GDS5192_3" }, { "dataset_id": "GDS5192", "description": "48 h", "sample_id": [ "GSM671488", "GSM671489", "GSM671496", "GSM671497" ], "type": "time", "id": "GDS5192_4" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS5192", "version": 1.0, "instances": "8", "variables": 18870, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5192.tab", "compression": "gz" } ], [ [ "GDS5193.tab" ], { "title": "isp-1 and nuo-6 mutants and paraquat-treated wildtype young adults", "description": "Analysis of wildtype worms treated with the pro-oxidant paraquat and electron transport chain mutants isp-1 and nuo-6. Results provide insight into common molecular mechanisms underlying the increased longevity in all three conditions.", "type": "Expression profiling by array", "pubmed_id": "24813612", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE54024", "order": "none", "update_date": "Sep 26 2014", "subsets": [ { "dataset_id": "GDS5193", "description": "wild type", "sample_id": [ "GSM1305989", "GSM1305990", "GSM1305991", "GSM1305992", "GSM1305999", "GSM1306000", "GSM1306001" ], "type": "genotype/variation", "id": "GDS5193_1" }, { "dataset_id": "GDS5193", "description": "isp-1(qm150) mutant", "sample_id": [ "GSM1305993", "GSM1305994", "GSM1305995" ], "type": "genotype/variation", "id": "GDS5193_2" }, { "dataset_id": "GDS5193", "description": "nuo-6(qm200) mutant", "sample_id": [ "GSM1305996", "GSM1305997", "GSM1305998" ], "type": "genotype/variation", "id": "GDS5193_3" }, { "dataset_id": "GDS5193", "description": "control (untreated)", "sample_id": [ "GSM1305990", "GSM1305991", "GSM1305992", "GSM1305989" ], "type": "protocol", "id": "GDS5193_4" }, { "dataset_id": "GDS5193", "description": "paraquat", "sample_id": [ "GSM1305999", "GSM1306000", "GSM1306001" ], "type": "protocol", "id": "GDS5193_5" }, { "dataset_id": "GDS5193", "description": "n/a", "sample_id": [ "GSM1305993", "GSM1305994", "GSM1305995", "GSM1305996", "GSM1305997", "GSM1305998" ], "type": "protocol", "id": "GDS5193_6" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS5193", "version": 1.0, "instances": "13", "variables": 18538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5193.tab", "compression": "gz" } ], [ [ "GDS5194.tab" ], { "title": "isp-1;ced-4 double mutation effect on young adults", "description": "Analysis of isp-1;ced-4 double mutants. ced-4 mutation in the intrinsic apoptosis signaling pathway suppresses the longevity of electron transport chain mutant isp-1. Results provide insight into molecular mechanisms underlying lifespan expansion.", "type": "Expression profiling by array", "pubmed_id": "24813612", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE54024", "order": "none", "update_date": "Sep 26 2014", "subsets": [ { "dataset_id": "GDS5194", "description": "wild type", "sample_id": [ "GSM1305989", "GSM1305990", "GSM1305991", "GSM1305992" ], "type": "genotype/variation", "id": "GDS5194_1" }, { "dataset_id": "GDS5194", "description": "isp-1(qm150) mutant", "sample_id": [ "GSM1305993", "GSM1305994", "GSM1305995" ], "type": "genotype/variation", "id": "GDS5194_2" }, { "dataset_id": "GDS5194", "description": "ced-4(n1162) mutant", "sample_id": [ "GSM1306002", "GSM1306003", "GSM1306004" ], "type": "genotype/variation", "id": "GDS5194_3" }, { "dataset_id": "GDS5194", "description": "isp-1(qm150) ced-4(n1162) double mutant", "sample_id": [ "GSM1306005", "GSM1306006", "GSM1306007" ], "type": "genotype/variation", "id": "GDS5194_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS5194", "version": 1.0, "instances": "13", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5194.tab", "compression": "gz" } ], [ [ "GDS5195.tab" ], { "title": "nuo-6;ced-4 double mutation effect on young adults", "description": "Analysis of nuo-6;ced-4 double mutants. ced-4 mutation in the intrinsic apoptosis signaling pathway suppresses the longevity of electron transport chain mutant nuo-6. Results provide insight into molecular mechanisms underlying lifespan expansion.", "type": "Expression profiling by array", "pubmed_id": "24813612", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE54024", "order": "none", "update_date": "Sep 26 2014", "subsets": [ { "dataset_id": "GDS5195", "description": "wild type", "sample_id": [ "GSM1305989", "GSM1305990", "GSM1305991", "GSM1305992" ], "type": "genotype/variation", "id": "GDS5195_1" }, { "dataset_id": "GDS5195", "description": "nuo-6(qm200) mutant", "sample_id": [ "GSM1305996", "GSM1305997", "GSM1305998" ], "type": "genotype/variation", "id": "GDS5195_2" }, { "dataset_id": "GDS5195", "description": "ced-4(n1162) mutant", "sample_id": [ "GSM1306002", "GSM1306003", "GSM1306004" ], "type": "genotype/variation", "id": "GDS5195_3" }, { "dataset_id": "GDS5195", "description": "nuo-6(qm200); ced-4(n1162) double mutant", "sample_id": [ "GSM1306008", "GSM1306009", "GSM1306010" ], "type": "genotype/variation", "id": "GDS5195_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS5195", "version": 1.0, "instances": "13", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5195.tab", "compression": "gz" } ], [ [ "GDS5196.tab" ], { "title": "Interferon-\u03b3 and lipopolysaccharide treatment effect on bone marrow derived macrophages", "description": "Analysis of bone marrow derived macrophages (BMDM) treated with interferon-\u03b3 (IFN-\u03b3), lipopolysaccharide (LPS) or both. IFN-\u03b3 and LPS stimulate BMDM production of reactive oxygen species (ROS) in immune defense response. Results provide insight into regulatory factors for ROS production in BMDM.", "type": "Expression profiling by array", "pubmed_id": "24739962", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE53986", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5196", "description": "interferon-\u03b3", "sample_id": [ "GSM1304840", "GSM1304841", "GSM1304842", "GSM1304843" ], "type": "protocol", "id": "GDS5196_1" }, { "dataset_id": "GDS5196", "description": "lipopolysaccharide", "sample_id": [ "GSM1304844", "GSM1304845", "GSM1304846", "GSM1304847" ], "type": "protocol", "id": "GDS5196_2" }, { "dataset_id": "GDS5196", "description": "interferon-\u03b3 + lipopolysaccharide", "sample_id": [ "GSM1304848", "GSM1304849", "GSM1304850", "GSM1304851" ], "type": "protocol", "id": "GDS5196_3" }, { "dataset_id": "GDS5196", "description": "untreated control", "sample_id": [ "GSM1304836", "GSM1304837", "GSM1304838", "GSM1304839" ], "type": "protocol", "id": "GDS5196_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5196", "version": 1.0, "instances": "16", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5196.tab", "compression": "gz" } ], [ [ "GDS5197.tab" ], { "title": "Silica-induced pulmonary toxicity: blood (part I)", "description": "Analysis of blood samples from Fischer animals for up to 16 weeks following inhalation of crystalline silica at a concentration of 15 mg/m3, 6 h/day for 5 consecutive days. Results provide insight into the utility of blood gene expression profiling to detect pulmonary toxicity induced by silica.", "type": "Expression profiling by array", "pubmed_id": "21602193", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "72", "value_type": "transformed count", "reference_series": "GSE27023", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5197", "description": "control", "sample_id": [ "GSM665736", "GSM665713", "GSM665741", "GSM665725", "GSM665727", "GSM665707", "GSM665720", "GSM665743", "GSM665723", "GSM665711", "GSM665731", "GSM665748", "GSM665710", "GSM665717", "GSM665744", "GSM665735", "GSM665726", "GSM665703", "GSM665739", "GSM665719", "GSM665737", "GSM665706", "GSM665718", "GSM665745" ], "type": "agent", "id": "GDS5197_1" }, { "dataset_id": "GDS5197", "description": "silica", "sample_id": [ "GSM665704", "GSM665733", "GSM665722", "GSM665742", "GSM665762", "GSM665786", "GSM665759", "GSM665782", "GSM665712", "GSM665730", "GSM665721", "GSM665746", "GSM665765", "GSM665791", "GSM665776", "GSM665760", "GSM665708", "GSM665772", "GSM665794", "GSM665753", "GSM665747", "GSM665714", "GSM665728", "GSM665784", "GSM665709", "GSM665734", "GSM665767", "GSM665795", "GSM665778", "GSM665738", "GSM665724", "GSM665758", "GSM665705", "GSM665732", "GSM665715", "GSM665740", "GSM665751", "GSM665796", "GSM665777", "GSM665766", "GSM665702", "GSM665716", "GSM665779", "GSM665797", "GSM665756", "GSM665729", "GSM665749", "GSM665773" ], "type": "agent", "id": "GDS5197_2" }, { "dataset_id": "GDS5197", "description": "0 wk", "sample_id": [ "GSM665736", "GSM665713", "GSM665741", "GSM665725", "GSM665704", "GSM665733", "GSM665722", "GSM665742", "GSM665762", "GSM665786", "GSM665759", "GSM665782" ], "type": "time", "id": "GDS5197_3" }, { "dataset_id": "GDS5197", "description": "1 wk", "sample_id": [ "GSM665727", "GSM665707", "GSM665720", "GSM665743", "GSM665712", "GSM665730", "GSM665721", "GSM665746", "GSM665765", "GSM665791", "GSM665776", "GSM665760" ], "type": "time", "id": "GDS5197_4" }, { "dataset_id": "GDS5197", "description": "2 wk", "sample_id": [ "GSM665710", "GSM665717", "GSM665744", "GSM665735", "GSM665709", "GSM665734", "GSM665767", "GSM665795", "GSM665778", "GSM665738", "GSM665724", "GSM665758" ], "type": "time", "id": "GDS5197_5" }, { "dataset_id": "GDS5197", "description": "4 wk", "sample_id": [ "GSM665726", "GSM665703", "GSM665739", "GSM665719", "GSM665705", "GSM665732", "GSM665715", "GSM665740", "GSM665751", "GSM665796", "GSM665777", "GSM665766" ], "type": "time", "id": "GDS5197_6" }, { "dataset_id": "GDS5197", "description": "8 wk", "sample_id": [ "GSM665737", "GSM665706", "GSM665718", "GSM665745", "GSM665702", "GSM665716", "GSM665779", "GSM665797", "GSM665756", "GSM665729", "GSM665749", "GSM665773" ], "type": "time", "id": "GDS5197_7" }, { "dataset_id": "GDS5197", "description": "16 wk", "sample_id": [ "GSM665723", "GSM665711", "GSM665731", "GSM665748", "GSM665708", "GSM665772", "GSM665794", "GSM665753", "GSM665747", "GSM665714", "GSM665728", "GSM665784" ], "type": "time", "id": "GDS5197_8" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS5197", "version": 1.0, "instances": "72", "variables": 22036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5197.tab", "compression": "gz" } ], [ [ "GDS5198.tab" ], { "title": "Silica-induced pulmonary toxicity: blood (part II)", "description": "Analysis of blood samples from Fischer animals 16 hours following inhalation of crystalline silica at a concentration of 2 mg/m3, 6 h/day for 5 consecutive days. Results provide insight into the utility of blood gene expression profiling to detect pulmonary toxicity induced by silica.", "type": "Expression profiling by array", "pubmed_id": "21602193", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE27023", "order": "none", "update_date": "Sep 11 2014", "subsets": [ { "dataset_id": "GDS5198", "description": "control", "sample_id": [ "GSM665761", "GSM665771", "GSM665788", "GSM665774" ], "type": "agent", "id": "GDS5198_1" }, { "dataset_id": "GDS5198", "description": "silica", "sample_id": [ "GSM665785", "GSM665775", "GSM665793", "GSM665792", "GSM665750", "GSM665770", "GSM665769", "GSM665754" ], "type": "agent", "id": "GDS5198_2" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS5198", "version": 1.0, "instances": "12", "variables": 22035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5198.tab", "compression": "gz" } ], [ [ "GDS5199.tab" ], { "title": "Silica-induced pulmonary toxicity: blood (part III)", "description": "Analysis of blood samples from Fischer animals 16 hours following inhalation of crystalline silica at a concentration of 1 mg/m3, 6 h/day for 5 consecutive days. Results provide insight into the utility of blood gene expression profiling to detect pulmonary toxicity induced by silica.", "type": "Expression profiling by array", "pubmed_id": "21602193", "platform": "GPL6101", "platform_organism": "Rattus norvegicus", "platform_technology_type": "oligonucleotide beads", "feature_count": "22523", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE27023", "order": "none", "update_date": "Sep 11 2014", "subsets": [ { "dataset_id": "GDS5199", "description": "control", "sample_id": [ "GSM665763", "GSM665755", "GSM665787", "GSM665781" ], "type": "agent", "id": "GDS5199_1" }, { "dataset_id": "GDS5199", "description": "silica", "sample_id": [ "GSM665764", "GSM665768", "GSM665757", "GSM665752", "GSM665789", "GSM665790", "GSM665780", "GSM665783" ], "type": "agent", "id": "GDS5199_2" } ], "taxid": "10116", "genes": 22033, "aggregation_function": "mean", "name": "GDS5199", "version": 1.0, "instances": "12", "variables": 22035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5199.tab", "compression": "gz" } ], [ [ "GDS52.tab" ], { "title": "Bone marrow B cell precursors (Mu11K-B)", "description": "Gene expression profiles of five consecutive stages of B cell development. Flow-cytometrically purified or ex vivo-isolated cells examined.", "type": "Expression profiling by array", "pubmed_id": [ "11779835", "17890238" ], "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE13", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS52", "description": "pre-BI cells", "sample_id": [ "GSM653", "GSM654", "GSM655", "GSM656", "GSM657", "GSM658" ], "type": "cell type", "id": "GDS52_1" }, { "dataset_id": "GDS52", "description": "immature B cells", "sample_id": [ "GSM637", "GSM638", "GSM639", "GSM640", "GSM641" ], "type": "cell type", "id": "GDS52_2" }, { "dataset_id": "GDS52", "description": "small pre-BII cells", "sample_id": [ "GSM659", "GSM660", "GSM661", "GSM662", "GSM663" ], "type": "cell type", "id": "GDS52_3" }, { "dataset_id": "GDS52", "description": "mature B cells", "sample_id": [ "GSM647", "GSM648", "GSM649", "GSM650", "GSM651", "GSM652" ], "type": "cell type", "id": "GDS52_4" }, { "dataset_id": "GDS52", "description": "large pre-BII cells", "sample_id": [ "GSM642", "GSM643", "GSM644", "GSM645", "GSM646" ], "type": "cell type", "id": "GDS52_5" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS52", "version": 1.0, "instances": "27", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS52.tab", "compression": "gz" } ], [ [ "GDS520.tab" ], { "title": "Hippocampal aging and cognitive impairment", "description": "Identification of aging-dependent cognitive decline gene expression. Hippocampal CA1 tissue collected from 4, 14, and 24 month old male Fischer 344 rats after 7 days training on water maze and object memory task.", "type": "Expression profiling by array", "pubmed_id": "12736351", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "29", "value_type": "count", "reference_series": "GSE854", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS520", "description": "4 months", "sample_id": [ "GSM13323", "GSM13324", "GSM13325", "GSM13326", "GSM13327", "GSM13328", "GSM13329", "GSM13330", "GSM13331" ], "type": "age", "id": "GDS520_1" }, { "dataset_id": "GDS520", "description": "14 months", "sample_id": [ "GSM13313", "GSM13314", "GSM13315", "GSM13316", "GSM13317", "GSM13318", "GSM13319", "GSM13320", "GSM13321", "GSM13322" ], "type": "age", "id": "GDS520_2" }, { "dataset_id": "GDS520", "description": "24 months", "sample_id": [ "GSM13303", "GSM13304", "GSM13305", "GSM13306", "GSM13307", "GSM13308", "GSM13309", "GSM13310", "GSM13311", "GSM13312" ], "type": "age", "id": "GDS520_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS520", "version": 1.0, "instances": "29", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS520.tab", "compression": "gz" } ], [ [ "GDS5200.tab" ], { "title": "Kruppel-like factor 5 deficiency in bladder epithelial cells effect on the fetal bladder", "description": "Analysis of fetal bladders with Kruppel-like transcription factor 5 (KLF5) deficiency specific to bladder epithelial cells. KLF5 is expressed in proliferative epithelial cell types during embryogenesis. Results provide insight into the role of KLF5 in the development of the bladder urothelium.", "type": "Expression profiling by array", "pubmed_id": "21803035", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE27014", "order": "none", "update_date": "Oct 01 2014", "subsets": [ { "dataset_id": "GDS5200", "description": "wild type", "sample_id": [ "GSM665451", "GSM665453", "GSM665454" ], "type": "genotype/variation", "id": "GDS5200_1" }, { "dataset_id": "GDS5200", "description": "KLF5 null", "sample_id": [ "GSM665446", "GSM665448", "GSM665449" ], "type": "genotype/variation", "id": "GDS5200_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5200", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5200.tab", "compression": "gz" } ], [ [ "GDS5201.tab" ], { "title": "Lung tumors arising from Wnt/beta-catenin signaling activation and constitutively active Kras mutant", "description": "Analysis of lung tumors resulting from the concurrent activation of Wnt/beta-catenin signaling and expression of a constitutively active Kras mutant in the lung epithelium. 21% of lung tumors have Kras mutations. Results provide insight into the role of Wnt/beta-catenin signaling in lung cancer.", "type": "Expression profiling by array", "pubmed_id": "21490395", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE26850", "order": "none", "update_date": "Sep 13 2014", "subsets": [ { "dataset_id": "GDS5201", "description": "normal lung", "sample_id": [ "GSM661022", "GSM661023" ], "type": "tissue", "id": "GDS5201_1" }, { "dataset_id": "GDS5201", "description": "lung tumor", "sample_id": [ "GSM661018", "GSM661019", "GSM661020", "GSM661021" ], "type": "tissue", "id": "GDS5201_2" }, { "dataset_id": "GDS5201", "description": "control", "sample_id": [ "GSM661022", "GSM661023" ], "type": "genotype/variation", "id": "GDS5201_3" }, { "dataset_id": "GDS5201", "description": "active Kras", "sample_id": [ "GSM661020", "GSM661021" ], "type": "genotype/variation", "id": "GDS5201_4" }, { "dataset_id": "GDS5201", "description": "active Kras and Wnt/beta-catenin signaling", "sample_id": [ "GSM661018", "GSM661019" ], "type": "genotype/variation", "id": "GDS5201_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5201", "version": 1.0, "instances": "6", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5201.tab", "compression": "gz" } ], [ [ "GDS5202.tab" ], { "title": "Type 1 interferon effect on primary neurons and fibroblasts from E14.5 embryos", "description": "Analysis of primary mixed cortical/hippocampal neurons and primary fibroblasts, derived from the same E14.5 embryos and treated with interferon (IFN)-\u03b2. Results provide insight into molecular mechanisms underlying the IFN-stimulated response in the primary neuron cell population.", "type": "Expression profiling by array", "pubmed_id": "24453359", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE53951", "order": "none", "update_date": "Oct 01 2014", "subsets": [ { "dataset_id": "GDS5202", "description": "mixed cortical/hippocampal neuron", "sample_id": [ "GSM1303943", "GSM1303944", "GSM1303945", "GSM1303946" ], "type": "cell type", "id": "GDS5202_1" }, { "dataset_id": "GDS5202", "description": "primary fibroblast", "sample_id": [ "GSM1303947", "GSM1303948", "GSM1303949", "GSM1303950" ], "type": "cell type", "id": "GDS5202_2" }, { "dataset_id": "GDS5202", "description": "L929 fibroblast", "sample_id": [ "GSM1303951", "GSM1303952" ], "type": "cell type", "id": "GDS5202_3" }, { "dataset_id": "GDS5202", "description": "control", "sample_id": [ "GSM1303947", "GSM1303949", "GSM1303943", "GSM1303945", "GSM1303951" ], "type": "agent", "id": "GDS5202_4" }, { "dataset_id": "GDS5202", "description": "interferon-\u03b2", "sample_id": [ "GSM1303948", "GSM1303950", "GSM1303944", "GSM1303946", "GSM1303952" ], "type": "agent", "id": "GDS5202_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5202", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5202.tab", "compression": "gz" } ], [ [ "GDS5204.tab" ], { "title": "Age effect on normal adult brain: frontal cortical region", "description": "Analysis of postmortem neuropathologically normal brain samples from the frontal cortical regions of young, middle aged, normal aged and extremely aged adults. Results provide insight into molecular mechanisms of aging in frontal cortical regions of the brain.", "type": "Expression profiling by array", "pubmed_id": "24670762", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "41", "value_type": "transformed count", "reference_series": "GSE53890", "order": "ordered", "update_date": "Oct 01 2014", "subsets": [ { "dataset_id": "GDS5204", "description": "young (<40yr)", "sample_id": [ "GSM1303144", "GSM1303145", "GSM1303146", "GSM1303147", "GSM1303148", "GSM1303149", "GSM1303150", "GSM1303151", "GSM1303152", "GSM1303153", "GSM1303154", "GSM1303155" ], "type": "age", "id": "GDS5204_1" }, { "dataset_id": "GDS5204", "description": "middle aged (40-70yr)", "sample_id": [ "GSM1303156", "GSM1303157", "GSM1303158", "GSM1303159", "GSM1303160", "GSM1303161", "GSM1303162", "GSM1303163", "GSM1303164" ], "type": "age", "id": "GDS5204_2" }, { "dataset_id": "GDS5204", "description": "normal aged (70-94yr)", "sample_id": [ "GSM1303165", "GSM1303166", "GSM1303167", "GSM1303168", "GSM1303169", "GSM1303170", "GSM1303171", "GSM1303172", "GSM1303173", "GSM1303174", "GSM1303175", "GSM1303176", "GSM1303177", "GSM1303178", "GSM1303179", "GSM1303180" ], "type": "age", "id": "GDS5204_3" }, { "dataset_id": "GDS5204", "description": "extremely aged (95-106yr)", "sample_id": [ "GSM1303181", "GSM1303182", "GSM1303183", "GSM1303184" ], "type": "age", "id": "GDS5204_4" }, { "dataset_id": "GDS5204", "description": "male", "sample_id": [ "GSM1303144", "GSM1303147", "GSM1303148", "GSM1303151", "GSM1303155", "GSM1303156", "GSM1303159", "GSM1303161", "GSM1303162", "GSM1303164", "GSM1303165", "GSM1303167", "GSM1303169", "GSM1303170", "GSM1303172", "GSM1303174", "GSM1303175", "GSM1303177", "GSM1303178", "GSM1303182" ], "type": "gender", "id": "GDS5204_5" }, { "dataset_id": "GDS5204", "description": "female", "sample_id": [ "GSM1303145", "GSM1303146", "GSM1303149", "GSM1303150", "GSM1303152", "GSM1303153", "GSM1303154", "GSM1303157", "GSM1303158", "GSM1303160", "GSM1303163", "GSM1303166", "GSM1303168", "GSM1303171", "GSM1303173", "GSM1303176", "GSM1303179", "GSM1303180", "GSM1303181", "GSM1303183", "GSM1303184" ], "type": "gender", "id": "GDS5204_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5204", "version": 1.0, "instances": "41", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5204.tab", "compression": "gz" } ], [ [ "GDS5205.tab" ], { "title": "Long-term adult survivors of glioblastoma: primary tumors", "description": "Analysis of primary tumors from glioblastoma patients: long-term survivors with >36 months overall survival (OS), short-term survivors with <12 months OS, and patients with intermediate OS. Results provide insight into the molecular characterization of long-term survivors of glioblastoma.", "type": "Expression profiling by array", "pubmed_id": "24615357", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "70", "value_type": "transformed count", "reference_series": "GSE53733", "order": "none", "update_date": "Oct 31 2014", "subsets": [ { "dataset_id": "GDS5205", "description": "short-term overall survival", "sample_id": [ "GSM1299531", "GSM1299530", "GSM1299529", "GSM1299528", "GSM1299527", "GSM1299526", "GSM1299525", "GSM1299524", "GSM1299575", "GSM1299523", "GSM1299522", "GSM1299521", "GSM1299520", "GSM1299519", "GSM1299518", "GSM1299517" ], "type": "disease state", "id": "GDS5205_1" }, { "dataset_id": "GDS5205", "description": "intermediate overall survival", "sample_id": [ "GSM1299560", "GSM1299559", "GSM1299558", "GSM1299557", "GSM1299556", "GSM1299555", "GSM1299554", "GSM1299553", "GSM1299552", "GSM1299551", "GSM1299550", "GSM1299549", "GSM1299548", "GSM1299547", "GSM1299546", "GSM1299545", "GSM1299544", "GSM1299543", "GSM1299542", "GSM1299541", "GSM1299540", "GSM1299539", "GSM1299538", "GSM1299577", "GSM1299537", "GSM1299536", "GSM1299535", "GSM1299534", "GSM1299576", "GSM1299533", "GSM1299532" ], "type": "disease state", "id": "GDS5205_2" }, { "dataset_id": "GDS5205", "description": "long-term overall survival", "sample_id": [ "GSM1299586", "GSM1299585", "GSM1299574", "GSM1299573", "GSM1299572", "GSM1299571", "GSM1299584", "GSM1299583", "GSM1299570", "GSM1299569", "GSM1299568", "GSM1299567", "GSM1299566", "GSM1299582", "GSM1299565", "GSM1299564", "GSM1299581", "GSM1299563", "GSM1299562", "GSM1299561", "GSM1299580", "GSM1299579", "GSM1299578" ], "type": "disease state", "id": "GDS5205_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5205", "version": 1.0, "instances": "70", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5205.tab", "compression": "gz" } ], [ [ "GDS5206.tab" ], { "title": "Silica nanoparticle effect on lung adenocarcinoma epithelial A549 cells", "description": "Analysis of A549 cells treated with SiO2 NPs (diameters of 9nm and 18nm) and examined after 3hr and 22hr recovery times. Coated nanomaterials (e.g., SiO2 NPs) agglomerate less and are, thus, more easily inhalable. Results provide molecular insight into molecular basis of nanotoxicological effects.", "type": "Expression profiling by array", "pubmed_id": "25170680", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE53700", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5206", "description": "AS30 18nm nanoparticle", "sample_id": [ "GSM1299155", "GSM1299156", "GSM1299157", "GSM1299161", "GSM1299162", "GSM1299163" ], "type": "agent", "id": "GDS5206_1" }, { "dataset_id": "GDS5206", "description": "untreated control for AS30", "sample_id": [ "GSM1299158", "GSM1299159", "GSM1299160", "GSM1299164", "GSM1299165", "GSM1299166" ], "type": "agent", "id": "GDS5206_2" }, { "dataset_id": "GDS5206", "description": "SM30 9nm nanoparticle", "sample_id": [ "GSM1299149", "GSM1299150", "GSM1299151" ], "type": "agent", "id": "GDS5206_3" }, { "dataset_id": "GDS5206", "description": "untreated control for SM30", "sample_id": [ "GSM1299154", "GSM1299153", "GSM1299152" ], "type": "agent", "id": "GDS5206_4" }, { "dataset_id": "GDS5206", "description": "3 hour short recovery", "sample_id": [ "GSM1299149", "GSM1299150", "GSM1299151", "GSM1299152", "GSM1299153", "GSM1299154", "GSM1299155", "GSM1299156", "GSM1299157", "GSM1299158", "GSM1299159", "GSM1299160" ], "type": "time", "id": "GDS5206_5" }, { "dataset_id": "GDS5206", "description": "22 hour long recovery", "sample_id": [ "GSM1299161", "GSM1299162", "GSM1299163", "GSM1299164", "GSM1299165", "GSM1299166" ], "type": "time", "id": "GDS5206_6" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5206", "version": 1.0, "instances": "18", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5206.tab", "compression": "gz" } ], [ [ "GDS5208.tab" ], { "title": "Dexamethasone effect on epidermal keratinocytes in vitro: time course", "description": "Analysis of cultured epidermal keratinocytes treated with the synthetic glucocorticoid (GC) dexamethasone for up to 72 hours. GCs are used as therapeutic agents for skin conditions. Results provide insight into the molecular response of the epidermis to GCs.", "type": "Expression profiling by array", "pubmed_id": "17095510", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE26487", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5208", "description": "control", "sample_id": [ "GSM651309", "GSM651310", "GSM651311", "GSM651312", "GSM651313", "GSM651319", "GSM651320", "GSM651321", "GSM651322", "GSM651323" ], "type": "agent", "id": "GDS5208_1" }, { "dataset_id": "GDS5208", "description": "dexamethasone", "sample_id": [ "GSM651314", "GSM651315", "GSM651316", "GSM651317", "GSM651318", "GSM651324", "GSM651325", "GSM651326", "GSM651327", "GSM651328" ], "type": "agent", "id": "GDS5208_2" }, { "dataset_id": "GDS5208", "description": "1 h", "sample_id": [ "GSM651314", "GSM651324", "GSM651309", "GSM651319" ], "type": "time", "id": "GDS5208_3" }, { "dataset_id": "GDS5208", "description": "4 h", "sample_id": [ "GSM651315", "GSM651325", "GSM651310", "GSM651320" ], "type": "time", "id": "GDS5208_4" }, { "dataset_id": "GDS5208", "description": "24 h", "sample_id": [ "GSM651316", "GSM651326", "GSM651311", "GSM651321" ], "type": "time", "id": "GDS5208_5" }, { "dataset_id": "GDS5208", "description": "48 h", "sample_id": [ "GSM651317", "GSM651327", "GSM651312", "GSM651322" ], "type": "time", "id": "GDS5208_6" }, { "dataset_id": "GDS5208", "description": "72 h", "sample_id": [ "GSM651318", "GSM651328", "GSM651313", "GSM651323" ], "type": "time", "id": "GDS5208_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS5208", "version": 1.0, "instances": "20", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5208.tab", "compression": "gz" } ], [ [ "GDS5209.tab" ], { "title": "Obesity effect on perigonadal adipose tissue macrophages", "description": "Analysis of sorted FBC (F4/80+ CD11b+ CD11c+) cells and FB (F4/80+ CD11b+ CD11c-) perigonadal adipose tissue macrophages (ATM) from lean (C57BL/6J Lep +/+) and obese (C57BL/6J Lep ob/ob) mice. Results provide insight into molecular mechanisms underlying obesity-associated lipid metabolism in ATMs.", "type": "Expression profiling by array", "pubmed_id": "24315368", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE53403", "order": "none", "update_date": "Sep 16 2014", "subsets": [ { "dataset_id": "GDS5209", "description": "lean (C57BL/6J Lep +/+)", "sample_id": [ "GSM1290903", "GSM1290904", "GSM1290905", "GSM1290906", "GSM1290907", "GSM1290908", "GSM1290909", "GSM1290910" ], "type": "strain", "id": "GDS5209_1" }, { "dataset_id": "GDS5209", "description": "obese (C57BL/6J Lep ob/ob)", "sample_id": [ "GSM1290911", "GSM1290912", "GSM1290913", "GSM1290914", "GSM1290915", "GSM1290916", "GSM1290917", "GSM1290918" ], "type": "strain", "id": "GDS5209_2" }, { "dataset_id": "GDS5209", "description": "FB (F4/80+ CD11b+ CD11c-) adipose tissue macrophage", "sample_id": [ "GSM1290903", "GSM1290904", "GSM1290905", "GSM1290906", "GSM1290911", "GSM1290912", "GSM1290913", "GSM1290914" ], "type": "cell type", "id": "GDS5209_3" }, { "dataset_id": "GDS5209", "description": "FBC (F4/80+ CD11b+ CD11c+) adipose tissue macrophage", "sample_id": [ "GSM1290907", "GSM1290908", "GSM1290909", "GSM1290910", "GSM1290915", "GSM1290916", "GSM1290917", "GSM1290918" ], "type": "cell type", "id": "GDS5209_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5209", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5209.tab", "compression": "gz" } ], [ [ "GDS521.tab" ], { "title": "Intestinal tract gene expression (MG-U74A)", "description": "Analysis of regional differences in gene expression profiles along the intestinal tract. Duodenum, jejunum, ileum, and colon of 8 week-old male Hsd:ICR(CD-1) mice examined.", "type": "Expression profiling by array", "pubmed_id": "14679303", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE849", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS521", "description": "duodenum", "sample_id": [ "GSM13160", "GSM13161", "GSM13162" ], "type": "tissue", "id": "GDS521_1" }, { "dataset_id": "GDS521", "description": "jejunum", "sample_id": [ "GSM13166", "GSM13167", "GSM13168" ], "type": "tissue", "id": "GDS521_2" }, { "dataset_id": "GDS521", "description": "ileum", "sample_id": [ "GSM13163", "GSM13164", "GSM13165" ], "type": "tissue", "id": "GDS521_3" }, { "dataset_id": "GDS521", "description": "colon", "sample_id": [ "GSM13157", "GSM13158", "GSM13159" ], "type": "tissue", "id": "GDS521_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS521", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS521.tab", "compression": "gz" } ], [ [ "GDS5210.tab" ], { "title": "CSN5 depletion effect on hepatocellular carcinoma cell lines", "description": "Analysis of Huh7 and HepG2 hepatocellular carcinoma (HCC) cells depleted for CSN5, the fifth subunit of the COP9 signalosome. CSN5 expression is elevated in early HCC. Result provide insight into the role of CSN5 in the pathogenesis of HCC.", "type": "Expression profiling by array", "pubmed_id": "21499307", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE26485", "order": "none", "update_date": "Sep 16 2014", "subsets": [ { "dataset_id": "GDS5210", "description": "HepG2", "sample_id": [ "GSM651284", "GSM651285", "GSM651286", "GSM651287", "GSM651288", "GSM651289", "GSM651290", "GSM651291" ], "type": "cell line", "id": "GDS5210_1" }, { "dataset_id": "GDS5210", "description": "Huh7", "sample_id": [ "GSM651292", "GSM651293", "GSM651294", "GSM651295", "GSM651296", "GSM651297", "GSM651298", "GSM651299" ], "type": "cell line", "id": "GDS5210_2" }, { "dataset_id": "GDS5210", "description": "control", "sample_id": [ "GSM651284", "GSM651285", "GSM651286", "GSM651287", "GSM651292", "GSM651293", "GSM651294", "GSM651295" ], "type": "protocol", "id": "GDS5210_3" }, { "dataset_id": "GDS5210", "description": "CSN5 depletion", "sample_id": [ "GSM651288", "GSM651289", "GSM651290", "GSM651291", "GSM651296", "GSM651297", "GSM651298", "GSM651299" ], "type": "protocol", "id": "GDS5210_4" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS5210", "version": 1.0, "instances": "16", "variables": 19338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5210.tab", "compression": "gz" } ], [ [ "GDS5211.tab" ], { "title": "Turner syndrome: second trimester amniotic fluid", "description": "Analysis of second trimester amniotic fluid from Turner syndrome and euploid female fetuses. Turner syndrome is a sex chromosome aneuploidy generally due to monosomy X. Results provide insight into molecular mechanisms underlying Turner syndrome pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24850140", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE58435", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5211", "description": "Turner syndrome", "sample_id": [ "GSM1411021", "GSM1411022", "GSM1411023", "GSM1411024", "GSM1411025" ], "type": "disease state", "id": "GDS5211_1" }, { "dataset_id": "GDS5211", "description": "normal euploid", "sample_id": [ "GSM1411026", "GSM1411027", "GSM1411028", "GSM1411029", "GSM1411030" ], "type": "disease state", "id": "GDS5211_2" }, { "dataset_id": "GDS5211", "description": "karyotype: 45,X", "sample_id": [ "GSM1411021", "GSM1411022", "GSM1411023", "GSM1411024", "GSM1411025" ], "type": "genotype/variation", "id": "GDS5211_3" }, { "dataset_id": "GDS5211", "description": "karyotype: 46,XX", "sample_id": [ "GSM1411026", "GSM1411027", "GSM1411028", "GSM1411029", "GSM1411030" ], "type": "genotype/variation", "id": "GDS5211_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5211", "version": 1.0, "instances": "10", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5211.tab", "compression": "gz" } ], [ [ "GDS5213.tab" ], { "title": "Transcription factor c-MYC intron binding protein 1 overexpression effect on embryonic kidney cells", "description": "Analysis of embryonic kidney HEK293 cells overexpressing transcription factor c-MYC intron binding protein 1 (MIBP1). Results identify targets of MIBP1.", "type": "Expression profiling by array", "pubmed_id": "22294689", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE26420", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5213", "description": "control", "sample_id": [ "GSM648456", "GSM648457", "GSM648458" ], "type": "protocol", "id": "GDS5213_1" }, { "dataset_id": "GDS5213", "description": "MIBP1 overexpression", "sample_id": [ "GSM648459", "GSM648460", "GSM648461" ], "type": "protocol", "id": "GDS5213_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5213", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5213.tab", "compression": "gz" } ], [ [ "GDS5215.tab" ], { "title": "Molecular hydrogen-saturated water consumption effect on the liver", "description": "Analysis of livers of Sprague-Dawley animals following consumption of water containing 0.7 mM dissolved molecular hydrogen for 4 weeks. Molecular hydrogen is an antioxidant. Results provide insight into the molecular response of the liver to hydrogen saturated water.", "type": "Expression profiling by array", "pubmed_id": "21512236", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE26363", "order": "none", "update_date": "Oct 03 2014", "subsets": [ { "dataset_id": "GDS5215", "description": "control", "sample_id": [ "GSM647246", "GSM647247", "GSM647248", "GSM647249" ], "type": "agent", "id": "GDS5215_1" }, { "dataset_id": "GDS5215", "description": "hydrogen-saturated water", "sample_id": [ "GSM647250", "GSM647251", "GSM647252", "GSM647253" ], "type": "agent", "id": "GDS5215_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5215", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5215.tab", "compression": "gz" } ], [ [ "GDS5216.tab" ], { "title": "Age effect on the skeletal muscle", "description": "Analysis of vastus lateralis muscle biopsy samples from young (about 25 years old) and old (about 78 years old) adults. Subjects had not taken part in formal exercise. Results provide insight into the effect of age on basal gene expression in the skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "22302958", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE25941", "order": "none", "update_date": "Sep 17 2014", "subsets": [ { "dataset_id": "GDS5216", "description": "young", "sample_id": [ "GSM637513", "GSM637514", "GSM637515", "GSM637516", "GSM637517", "GSM637518", "GSM637519", "GSM637520", "GSM637532", "GSM637533", "GSM637534", "GSM637535", "GSM637536", "GSM637537", "GSM637538" ], "type": "age", "id": "GDS5216_1" }, { "dataset_id": "GDS5216", "description": "old", "sample_id": [ "GSM637525", "GSM637522", "GSM637531", "GSM637529", "GSM637528", "GSM637523", "GSM637530", "GSM637527", "GSM637524", "GSM637521", "GSM637526", "GSM637543", "GSM637546", "GSM637548", "GSM637541", "GSM637547", "GSM637539", "GSM637542", "GSM637545", "GSM637540", "GSM637544" ], "type": "age", "id": "GDS5216_2" }, { "dataset_id": "GDS5216", "description": "female", "sample_id": [ "GSM637525", "GSM637522", "GSM637531", "GSM637529", "GSM637528", "GSM637523", "GSM637530", "GSM637527", "GSM637524", "GSM637521", "GSM637526", "GSM637513", "GSM637516", "GSM637519", "GSM637520", "GSM637517", "GSM637518", "GSM637515", "GSM637514" ], "type": "gender", "id": "GDS5216_3" }, { "dataset_id": "GDS5216", "description": "male", "sample_id": [ "GSM637543", "GSM637546", "GSM637548", "GSM637541", "GSM637547", "GSM637539", "GSM637542", "GSM637545", "GSM637540", "GSM637544", "GSM637533", "GSM637534", "GSM637538", "GSM637535", "GSM637536", "GSM637532", "GSM637537" ], "type": "gender", "id": "GDS5216_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5216", "version": 1.0, "instances": "36", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5216.tab", "compression": "gz" } ], [ [ "GDS5217.tab" ], { "title": "Resistance exercise effect on MHC I and MHC IIa muscle fibers of young and old women", "description": "Analysis of slow-twitch MHC I and fast-twitch MHC IIa muscle fibers from young and old women before and after 12 weeks of progressive resistance training. Fibers obtained from vastus lateralis. Results provide insight into the molecular adaptation of young and old MHC I and IIa fibers to exercise.", "type": "Expression profiling by array", "pubmed_id": "22302958", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "70", "value_type": "count", "reference_series": "GSE28392", "order": "none", "update_date": "Sep 17 2014", "subsets": [ { "dataset_id": "GDS5217", "description": "young", "sample_id": [ "GSM701766", "GSM701767", "GSM701768", "GSM701769", "GSM701770", "GSM701771", "GSM701772", "GSM701773", "GSM701774", "GSM701775", "GSM701776", "GSM701777", "GSM701778", "GSM701779", "GSM701780", "GSM701781", "GSM701782", "GSM701783", "GSM701784", "GSM701785", "GSM701786", "GSM701803", "GSM701804", "GSM701805", "GSM701806", "GSM701807", "GSM701808", "GSM701809", "GSM701810", "GSM701811", "GSM701812", "GSM701813", "GSM701814", "GSM701815", "GSM701816", "GSM701817", "GSM701818", "GSM701819", "GSM701820", "GSM701821", "GSM701822" ], "type": "age", "id": "GDS5217_1" }, { "dataset_id": "GDS5217", "description": "old", "sample_id": [ "GSM701787", "GSM701788", "GSM701789", "GSM701790", "GSM701791", "GSM701792", "GSM701793", "GSM701794", "GSM701795", "GSM701796", "GSM701797", "GSM701798", "GSM701799", "GSM701800", "GSM701801", "GSM701802", "GSM701823", "GSM701824", "GSM701825", "GSM701826", "GSM701827", "GSM701828", "GSM701829", "GSM701830", "GSM701831", "GSM701832", "GSM701833", "GSM701834", "GSM701835" ], "type": "age", "id": "GDS5217_2" }, { "dataset_id": "GDS5217", "description": "basal", "sample_id": [ "GSM701823", "GSM701787", "GSM701824", "GSM701788", "GSM701789", "GSM701790", "GSM701803", "GSM701766", "GSM701804", "GSM701767", "GSM701805", "GSM701768", "GSM701769", "GSM701806", "GSM701770" ], "type": "time", "id": "GDS5217_3" }, { "dataset_id": "GDS5217", "description": "4 h after 1st session", "sample_id": [ "GSM701792", "GSM701826", "GSM701793", "GSM701827", "GSM701791", "GSM701825", "GSM701771", "GSM701807", "GSM701772", "GSM701808", "GSM701809", "GSM701773", "GSM701774", "GSM701810", "GSM701775" ], "type": "time", "id": "GDS5217_4" }, { "dataset_id": "GDS5217", "description": "prior to last session", "sample_id": [ "GSM701794", "GSM701828", "GSM701795", "GSM701829", "GSM701796", "GSM701797", "GSM701830", "GSM701831", "GSM701776", "GSM701811", "GSM701777", "GSM701812", "GSM701778", "GSM701813", "GSM701779", "GSM701814", "GSM701815", "GSM701780", "GSM701816" ], "type": "time", "id": "GDS5217_5" }, { "dataset_id": "GDS5217", "description": "4 h after last session", "sample_id": [ "GSM701799", "GSM701833", "GSM701800", "GSM701834", "GSM701801", "GSM701802", "GSM701835", "GSM701798", "GSM701832", "GSM701781", "GSM701817", "GSM701782", "GSM701818", "GSM701783", "GSM701819", "GSM701784", "GSM701820", "GSM701821", "GSM701785", "GSM701822", "GSM701786" ], "type": "time", "id": "GDS5217_6" }, { "dataset_id": "GDS5217", "description": "slow twitch MHC I", "sample_id": [ "GSM701787", "GSM701788", "GSM701789", "GSM701790", "GSM701766", "GSM701767", "GSM701768", "GSM701769", "GSM701770", "GSM701792", "GSM701793", "GSM701791", "GSM701771", "GSM701772", "GSM701773", "GSM701774", "GSM701775", "GSM701794", "GSM701795", "GSM701796", "GSM701797", "GSM701776", "GSM701777", "GSM701778", "GSM701779", "GSM701780", "GSM701799", "GSM701800", "GSM701801", "GSM701802", "GSM701798", "GSM701781", "GSM701782", "GSM701783", "GSM701784", "GSM701785", "GSM701786" ], "type": "tissue", "id": "GDS5217_7" }, { "dataset_id": "GDS5217", "description": "fast twitch MHC IIa", "sample_id": [ "GSM701823", "GSM701824", "GSM701803", "GSM701804", "GSM701805", "GSM701806", "GSM701826", "GSM701827", "GSM701825", "GSM701807", "GSM701808", "GSM701809", "GSM701810", "GSM701828", "GSM701829", "GSM701830", "GSM701831", "GSM701811", "GSM701812", "GSM701813", "GSM701814", "GSM701815", "GSM701816", "GSM701833", "GSM701834", "GSM701835", "GSM701832", "GSM701817", "GSM701818", "GSM701819", "GSM701820", "GSM701821", "GSM701822" ], "type": "tissue", "id": "GDS5217_8" }, { "dataset_id": "GDS5217", "description": "subject 8", "sample_id": [ "GSM701816", "GSM701775", "GSM701770" ], "type": "individual", "id": "GDS5217_9" }, { "dataset_id": "GDS5217", "description": "subject 7", "sample_id": [ "GSM701810", "GSM701786", "GSM701780", "GSM701774" ], "type": "individual", "id": "GDS5217_10" }, { "dataset_id": "GDS5217", "description": "subject 6", "sample_id": [ "GSM701822", "GSM701815", "GSM701806", "GSM701785", "GSM701773", "GSM701769" ], "type": "individual", "id": "GDS5217_11" }, { "dataset_id": "GDS5217", "description": "subject 5", "sample_id": [ "GSM701821", "GSM701814" ], "type": "individual", "id": "GDS5217_12" }, { "dataset_id": "GDS5217", "description": "subject 4", "sample_id": [ "GSM701820", "GSM701784", "GSM701779", "GSM701768" ], "type": "individual", "id": "GDS5217_13" }, { "dataset_id": "GDS5217", "description": "subject 3", "sample_id": [ "GSM701819", "GSM701813", "GSM701809", "GSM701805", "GSM701783", "GSM701778", "GSM701767" ], "type": "individual", "id": "GDS5217_14" }, { "dataset_id": "GDS5217", "description": "subject 2", "sample_id": [ "GSM701818", "GSM701812", "GSM701808", "GSM701804", "GSM701782", "GSM701777", "GSM701772", "GSM701766" ], "type": "individual", "id": "GDS5217_15" }, { "dataset_id": "GDS5217", "description": "subject 1", "sample_id": [ "GSM701817", "GSM701811", "GSM701807", "GSM701803", "GSM701781", "GSM701776", "GSM701771" ], "type": "individual", "id": "GDS5217_16" }, { "dataset_id": "GDS5217", "description": "subject 9", "sample_id": [ "GSM701832", "GSM701825", "GSM701798", "GSM701791" ], "type": "individual", "id": "GDS5217_17" }, { "dataset_id": "GDS5217", "description": "subject 14", "sample_id": [ "GSM701831", "GSM701790" ], "type": "individual", "id": "GDS5217_18" }, { "dataset_id": "GDS5217", "description": "subject 13", "sample_id": [ "GSM701835", "GSM701830", "GSM701827", "GSM701802", "GSM701797", "GSM701793", "GSM701789" ], "type": "individual", "id": "GDS5217_19" }, { "dataset_id": "GDS5217", "description": "subject 12", "sample_id": [ "GSM701801", "GSM701796", "GSM701788" ], "type": "individual", "id": "GDS5217_20" }, { "dataset_id": "GDS5217", "description": "subject 11", "sample_id": [ "GSM701834", "GSM701829", "GSM701826", "GSM701824", "GSM701800", "GSM701795", "GSM701792", "GSM701787" ], "type": "individual", "id": "GDS5217_21" }, { "dataset_id": "GDS5217", "description": "subject 10", "sample_id": [ "GSM701833", "GSM701828", "GSM701823", "GSM701799", "GSM701794" ], "type": "individual", "id": "GDS5217_22" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5217", "version": 1.0, "instances": "70", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5217.tab", "compression": "gz" } ], [ [ "GDS5218.tab" ], { "title": "Resistance exercise effect on skeletal muscles of young and old adults", "description": "Analysis of vastus lateralis muscle biopsy samples from young (about 24 years old) and old (about 84 years old) adults before and after 12 weeks of progressive resistance training. Results provide insight into the molecular adaptation of the young and old skeletal muscle to resistance training.", "type": "Expression profiling by array", "pubmed_id": "22302958", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "110", "value_type": "count", "reference_series": "GSE28422", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5218", "description": "young", "sample_id": [ "GSM702357", "GSM702358", "GSM702359", "GSM702360", "GSM702361", "GSM702362", "GSM702363", "GSM702364", "GSM702365", "GSM702366", "GSM702367", "GSM702368", "GSM702369", "GSM702370", "GSM702371", "GSM702372", "GSM702373", "GSM702374", "GSM702375", "GSM702376", "GSM702377", "GSM702378", "GSM702379", "GSM702380", "GSM702381", "GSM702382", "GSM702383", "GSM702384", "GSM702385", "GSM702386", "GSM702387", "GSM702388", "GSM702413", "GSM702414", "GSM702415", "GSM702416", "GSM702417", "GSM702418", "GSM702419", "GSM702420", "GSM702421", "GSM702422", "GSM702423", "GSM702424", "GSM702425", "GSM702426", "GSM702427", "GSM702428", "GSM702429", "GSM702430", "GSM702431", "GSM702432", "GSM702433", "GSM702434", "GSM702435", "GSM702436", "GSM702437", "GSM702438", "GSM702439", "GSM702440", "GSM702441", "GSM702442" ], "type": "age", "id": "GDS5218_1" }, { "dataset_id": "GDS5218", "description": "old", "sample_id": [ "GSM702389", "GSM702390", "GSM702391", "GSM702392", "GSM702393", "GSM702394", "GSM702395", "GSM702396", "GSM702397", "GSM702398", "GSM702399", "GSM702400", "GSM702401", "GSM702402", "GSM702403", "GSM702404", "GSM702405", "GSM702406", "GSM702407", "GSM702408", "GSM702409", "GSM702410", "GSM702411", "GSM702412", "GSM702443", "GSM702444", "GSM702445", "GSM702446", "GSM702447", "GSM702448", "GSM702449", "GSM702450", "GSM702451", "GSM702452", "GSM702453", "GSM702454", "GSM702455", "GSM702456", "GSM702457", "GSM702458", "GSM702459", "GSM702460", "GSM702461", "GSM702462", "GSM702463", "GSM702464", "GSM702465", "GSM702466" ], "type": "age", "id": "GDS5218_2" }, { "dataset_id": "GDS5218", "description": "baseline", "sample_id": [ "GSM702443", "GSM702444", "GSM702445", "GSM702446", "GSM702447", "GSM702448", "GSM702413", "GSM702414", "GSM702415", "GSM702416", "GSM702417", "GSM702418", "GSM702419", "GSM702389", "GSM702390", "GSM702391", "GSM702392", "GSM702393", "GSM702394", "GSM702357", "GSM702358", "GSM702359", "GSM702360", "GSM702361", "GSM702362", "GSM702363", "GSM702364" ], "type": "time", "id": "GDS5218_3" }, { "dataset_id": "GDS5218", "description": "4 h after 1st session", "sample_id": [ "GSM702449", "GSM702450", "GSM702451", "GSM702452", "GSM702453", "GSM702454", "GSM702420", "GSM702421", "GSM702422", "GSM702423", "GSM702424", "GSM702425", "GSM702426", "GSM702427", "GSM702395", "GSM702396", "GSM702397", "GSM702398", "GSM702399", "GSM702400", "GSM702365", "GSM702366", "GSM702367", "GSM702368", "GSM702369", "GSM702370", "GSM702371", "GSM702372" ], "type": "time", "id": "GDS5218_4" }, { "dataset_id": "GDS5218", "description": "prior to last session", "sample_id": [ "GSM702455", "GSM702456", "GSM702457", "GSM702458", "GSM702459", "GSM702460", "GSM702428", "GSM702429", "GSM702430", "GSM702431", "GSM702432", "GSM702433", "GSM702434", "GSM702401", "GSM702402", "GSM702403", "GSM702404", "GSM702405", "GSM702406", "GSM702373", "GSM702374", "GSM702375", "GSM702376", "GSM702377", "GSM702378", "GSM702379", "GSM702380" ], "type": "time", "id": "GDS5218_5" }, { "dataset_id": "GDS5218", "description": "4 h after final session", "sample_id": [ "GSM702461", "GSM702462", "GSM702463", "GSM702464", "GSM702465", "GSM702466", "GSM702435", "GSM702436", "GSM702437", "GSM702438", "GSM702439", "GSM702440", "GSM702441", "GSM702442", "GSM702407", "GSM702408", "GSM702409", "GSM702410", "GSM702411", "GSM702412", "GSM702381", "GSM702382", "GSM702383", "GSM702384", "GSM702385", "GSM702386", "GSM702387", "GSM702388" ], "type": "time", "id": "GDS5218_6" }, { "dataset_id": "GDS5218", "description": "male", "sample_id": [ "GSM702357", "GSM702358", "GSM702359", "GSM702360", "GSM702361", "GSM702362", "GSM702363", "GSM702364", "GSM702365", "GSM702366", "GSM702367", "GSM702368", "GSM702369", "GSM702370", "GSM702371", "GSM702372", "GSM702373", "GSM702374", "GSM702375", "GSM702376", "GSM702377", "GSM702378", "GSM702379", "GSM702380", "GSM702381", "GSM702382", "GSM702383", "GSM702384", "GSM702385", "GSM702386", "GSM702387", "GSM702388", "GSM702389", "GSM702390", "GSM702391", "GSM702392", "GSM702393", "GSM702394", "GSM702395", "GSM702396", "GSM702397", "GSM702398", "GSM702399", "GSM702400", "GSM702401", "GSM702402", "GSM702403", "GSM702404", "GSM702405", "GSM702406", "GSM702407", "GSM702408", "GSM702409", "GSM702410", "GSM702411", "GSM702412" ], "type": "gender", "id": "GDS5218_7" }, { "dataset_id": "GDS5218", "description": "female", "sample_id": [ "GSM702413", "GSM702414", "GSM702415", "GSM702416", "GSM702417", "GSM702418", "GSM702419", "GSM702420", "GSM702421", "GSM702422", "GSM702423", "GSM702424", "GSM702425", "GSM702426", "GSM702427", "GSM702428", "GSM702429", "GSM702430", "GSM702431", "GSM702432", "GSM702433", "GSM702434", "GSM702435", "GSM702436", "GSM702437", "GSM702438", "GSM702439", "GSM702440", "GSM702441", "GSM702442", "GSM702443", "GSM702444", "GSM702445", "GSM702446", "GSM702447", "GSM702448", "GSM702449", "GSM702450", "GSM702451", "GSM702452", "GSM702453", "GSM702454", "GSM702455", "GSM702456", "GSM702457", "GSM702458", "GSM702459", "GSM702460", "GSM702461", "GSM702462", "GSM702463", "GSM702464", "GSM702465", "GSM702466" ], "type": "gender", "id": "GDS5218_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5218", "version": 1.0, "instances": "110", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5218.tab", "compression": "gz" } ], [ [ "GDS5219.tab" ], { "title": "Histone methyltransferase MMSET overexpression effect on KMS11 multiple myeloma cell line", "description": "Analysis of KMS11 t(4;14) MM parental cell line with a normal overexpressed multiple myeloma SET domain containing protein (MMSET) and cell lines knocked out for MMSET on the translocated allele (TKO) or on the non-translocated allele (NTKO). Results provide insight into role of MMSET in t(4;14) MM.", "type": "Expression profiling by array", "pubmed_id": "25188243", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE57863", "order": "none", "update_date": "Jan 30 2015", "subsets": [ { "dataset_id": "GDS5219", "description": "wild type", "sample_id": [ "GSM1395235", "GSM1395236", "GSM1395237" ], "type": "genotype/variation", "id": "GDS5219_1" }, { "dataset_id": "GDS5219", "description": "wild type MMSET allele inactivated", "sample_id": [ "GSM1395238", "GSM1395239", "GSM1395240" ], "type": "genotype/variation", "id": "GDS5219_2" }, { "dataset_id": "GDS5219", "description": "overexpressed MMSET allele inactivated (clone 1)", "sample_id": [ "GSM1395241", "GSM1395242", "GSM1395243" ], "type": "genotype/variation", "id": "GDS5219_3" }, { "dataset_id": "GDS5219", "description": "overexpressed MMSET allele inactivated (clone 2)", "sample_id": [ "GSM1395244", "GSM1395245", "GSM1395246" ], "type": "genotype/variation", "id": "GDS5219_4" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS5219", "version": 1.0, "instances": "12", "variables": 39533, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5219.tab", "compression": "gz" } ], [ [ "GDS522.tab" ], { "title": "Intestinal tract gene expression (MG-U74B)", "description": "Analysis of regional differences in gene expression profiles along the intestinal tract. Duodenum, jejunum, ileum, and colon of 8 week-old male Hsd:ICR(CD-1) mice examined.", "type": "Expression profiling by array", "pubmed_id": "14679303", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE849", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS522", "description": "duodenum", "sample_id": [ "GSM13173", "GSM13174", "GSM13175" ], "type": "tissue", "id": "GDS522_1" }, { "dataset_id": "GDS522", "description": "jejunum", "sample_id": [ "GSM13180", "GSM13181", "GSM13182" ], "type": "tissue", "id": "GDS522_2" }, { "dataset_id": "GDS522", "description": "ileum", "sample_id": [ "GSM13176", "GSM13177", "GSM13178" ], "type": "tissue", "id": "GDS522_3" }, { "dataset_id": "GDS522", "description": "colon", "sample_id": [ "GSM13170", "GSM13171", "GSM13172" ], "type": "tissue", "id": "GDS522_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS522", "version": 1.0, "instances": "12", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS522.tab", "compression": "gz" } ], [ [ "GDS5220.tab" ], { "title": "bZIP transcription factor E4bp4 deficiency effect on lineage-depleted bone marrow cells", "description": "Analysis of wild-type and E4bp4-knockout lineage-depleted bone marrow which is enriched for hematopoietic progenitor cells. Transcription factor E4bp4 (Nfil3) is essential for natural killer (NK) cell development. Results provide insight into downstream targets of E4bp4 in early NK development.", "type": "Expression profiling by array", "pubmed_id": "24663216", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE55014", "order": "none", "update_date": "Jan 30 2015", "subsets": [ { "dataset_id": "GDS5220", "description": "E4bp4-/- lineage-negative", "sample_id": [ "GSM1327930", "GSM1327929", "GSM1327928", "GSM1327927", "GSM1327926", "GSM1327925" ], "type": "genotype/variation", "id": "GDS5220_1" }, { "dataset_id": "GDS5220", "description": "E4bp4+/+ lineage-negative", "sample_id": [ "GSM1327936", "GSM1327935", "GSM1327934", "GSM1327933", "GSM1327932", "GSM1327931" ], "type": "genotype/variation", "id": "GDS5220_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5220", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5220.tab", "compression": "gz" } ], [ [ "GDS5221.tab" ], { "title": "U2OS osteosarcoma cell line response to strigolactone analogs ST362 and MEB55: 6 hours", "description": "Analysis of U2OS cells treated with strigolactone (SL) analog ST362 or MEB55 for 6hr. SL is a plant hormone. SL analogs potently inhibit growth of breast cancer cells. Results provide insight into molecular mechanisms underlying the anti-tumorigenic effects of SL analogs towards cancer cells.", "type": "Expression profiling by array", "pubmed_id": "24742967", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE54820", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5221", "description": "control", "sample_id": [ "GSM1324450", "GSM1324451" ], "type": "agent", "id": "GDS5221_1" }, { "dataset_id": "GDS5221", "description": "strigolactone analog ST362", "sample_id": [ "GSM1324452", "GSM1324453" ], "type": "agent", "id": "GDS5221_2" }, { "dataset_id": "GDS5221", "description": "strigolactone analog MEB55", "sample_id": [ "GSM1324454", "GSM1324455" ], "type": "agent", "id": "GDS5221_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5221", "version": 1.0, "instances": "6", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5221.tab", "compression": "gz" } ], [ [ "GDS5222.tab" ], { "title": "U2OS osteosarcoma cell line response to strigolactone analogs ST362 and MEB55: 24 hours", "description": "Analysis of U2OS cells treated with strigolactone (SL) analog ST362 or MEB55 for 24hr. SL is a plant hormone. SL analogs potently inhibit growth of breast cancer cells. Results provide insight into molecular mechanisms underlying the anti-tumorigenic effects of SL analogs towards cancer cells.", "type": "Expression profiling by array", "pubmed_id": "24742967", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE54820", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5222", "description": "control", "sample_id": [ "GSM1324456", "GSM1324457" ], "type": "agent", "id": "GDS5222_1" }, { "dataset_id": "GDS5222", "description": "strigolactone analog ST362", "sample_id": [ "GSM1324458", "GSM1324459" ], "type": "agent", "id": "GDS5222_2" }, { "dataset_id": "GDS5222", "description": "strigolactone analog MEB55", "sample_id": [ "GSM1324460", "GSM1324461" ], "type": "agent", "id": "GDS5222_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5222", "version": 1.0, "instances": "6", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5222.tab", "compression": "gz" } ], [ [ "GDS5223.tab" ], { "title": "Nuclear hormone receptor NR4A1 deficiency effect on FHH model of hypertension-associated renal disease: time course", "description": "Analysis of kidney from 8-24 week-old, Nr4a1-deficient (Nr4a1\u2212/\u2212) animals developed on the genetic background of the Fawn-Hooded Hypertensive (FHH) rat. The FHH model is susceptible to kidney injury. Results provide insight into the role of Nr4a1 in the pathogenesis of kidney disease.", "type": "Expression profiling by array", "pubmed_id": "24722447", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE54714", "order": "none", "update_date": "Jan 30 2015", "subsets": [ { "dataset_id": "GDS5223", "description": "week 8", "sample_id": [ "GSM1322689", "GSM1322690", "GSM1322691", "GSM1322686", "GSM1322687", "GSM1322688" ], "type": "time", "id": "GDS5223_1" }, { "dataset_id": "GDS5223", "description": "week 16", "sample_id": [ "GSM1322692", "GSM1322693", "GSM1322694", "GSM1322695", "GSM1322696", "GSM1322697" ], "type": "time", "id": "GDS5223_2" }, { "dataset_id": "GDS5223", "description": "week 24", "sample_id": [ "GSM1322701", "GSM1322702", "GSM1322703", "GSM1322698", "GSM1322699", "GSM1322700" ], "type": "time", "id": "GDS5223_3" }, { "dataset_id": "GDS5223", "description": "wild-type FHH", "sample_id": [ "GSM1322692", "GSM1322693", "GSM1322694", "GSM1322698", "GSM1322699", "GSM1322700", "GSM1322686", "GSM1322687", "GSM1322688" ], "type": "genotype/variation", "id": "GDS5223_4" }, { "dataset_id": "GDS5223", "description": "Nr4a1-/-", "sample_id": [ "GSM1322695", "GSM1322696", "GSM1322697", "GSM1322701", "GSM1322702", "GSM1322703", "GSM1322689", "GSM1322690", "GSM1322691" ], "type": "genotype/variation", "id": "GDS5223_5" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS5223", "version": 1.0, "instances": "18", "variables": 26457, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5223.tab", "compression": "gz" } ], [ [ "GDS5225.tab" ], { "title": "Spleen response to infection by Plasmodium yoelii strains N67 and N67C", "description": "Analysis of spleen from C57BL/6 females infected with Plasmodium yoelii strains N67 and N67C which produce different levels of disease severity. Results provide insight into host innate response pathways corresponding to strain-specific disease phenotypes.", "type": "Expression profiling by array", "pubmed_id": "24474800", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE51329", "order": "none", "update_date": "Oct 23 2014", "subsets": [ { "dataset_id": "GDS5225", "description": "mock", "sample_id": [ "GSM1242937", "GSM1242940", "GSM1242951", "GSM1242954", "GSM1242945", "GSM1242948" ], "type": "infection", "id": "GDS5225_1" }, { "dataset_id": "GDS5225", "description": "Plasmodium yoelii N67", "sample_id": [ "GSM1242938", "GSM1242941", "GSM1242952", "GSM1242943", "GSM1242946", "GSM1242949" ], "type": "infection", "id": "GDS5225_2" }, { "dataset_id": "GDS5225", "description": "Plasmodium yoelii N67C", "sample_id": [ "GSM1242939", "GSM1242942", "GSM1242953", "GSM1242944", "GSM1242947", "GSM1242950" ], "type": "infection", "id": "GDS5225_3" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5225", "version": 1.0, "instances": "18", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5225.tab", "compression": "gz" } ], [ [ "GDS5226.tab" ], { "title": "Age effect on adipocytes of the bone marrow and epididymis", "description": "Analysis of bone marrow and epididymal adipocytes of 6 to 18 month old C57BL/6J animals. Aging is associated with impaired adipogenesis in various fat depots. An increase in bone marrow adiposity is associated with age-related bone disease.", "type": "Expression profiling by array", "pubmed_id": "21545734", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE25905", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5226", "description": "bone marrow adipocyte", "sample_id": [ "GSM635890", "GSM635891", "GSM635892", "GSM635896", "GSM635897", "GSM635898", "GSM635884", "GSM635885", "GSM635886" ], "type": "cell type", "id": "GDS5226_1" }, { "dataset_id": "GDS5226", "description": "epididymal adipocyte", "sample_id": [ "GSM635893", "GSM635894", "GSM635895", "GSM635899", "GSM635900", "GSM635901", "GSM635887", "GSM635888", "GSM635889" ], "type": "cell type", "id": "GDS5226_2" }, { "dataset_id": "GDS5226", "description": "6 mo", "sample_id": [ "GSM635887", "GSM635888", "GSM635889", "GSM635884", "GSM635885", "GSM635886" ], "type": "age", "id": "GDS5226_3" }, { "dataset_id": "GDS5226", "description": "14 mo", "sample_id": [ "GSM635893", "GSM635894", "GSM635895", "GSM635890", "GSM635891", "GSM635892" ], "type": "age", "id": "GDS5226_4" }, { "dataset_id": "GDS5226", "description": "18 mo", "sample_id": [ "GSM635899", "GSM635900", "GSM635901", "GSM635896", "GSM635897", "GSM635898" ], "type": "age", "id": "GDS5226_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5226", "version": 1.0, "instances": "18", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5226.tab", "compression": "gz" } ], [ [ "GDS5227.tab" ], { "title": "3D-culture effect on fallopian tube secretory epithelial cells", "description": "Analysis of fallopian tube secretory epithelial cells (FTSECs) cultured in 2D or in 3D on polyHEMA coated plates. FTSECs have been implicated as a cell-of-origin for high-grade epithelial ovarian cancer. Results provide insight into molecular mechanisms underlying epithelial ovarovarian cancer.", "type": "Expression profiling by array", "pubmed_id": "24070420", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE51220", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5227", "description": "3D culture", "sample_id": [ "GSM1240691", "GSM1240685", "GSM1240679", "GSM1240689", "GSM1240683", "GSM1240677", "GSM1240687", "GSM1240681", "GSM1240675" ], "type": "growth protocol", "id": "GDS5227_1" }, { "dataset_id": "GDS5227", "description": "2D culture", "sample_id": [ "GSM1240690", "GSM1240684", "GSM1240678", "GSM1240688", "GSM1240682", "GSM1240676", "GSM1240686", "GSM1240680", "GSM1240674" ], "type": "growth protocol", "id": "GDS5227_2" }, { "dataset_id": "GDS5227", "description": "patient 02", "sample_id": [ "GSM1240687", "GSM1240681", "GSM1240675", "GSM1240686", "GSM1240680", "GSM1240674" ], "type": "individual", "id": "GDS5227_3" }, { "dataset_id": "GDS5227", "description": "patient 03", "sample_id": [ "GSM1240689", "GSM1240683", "GSM1240677", "GSM1240688", "GSM1240682", "GSM1240676" ], "type": "individual", "id": "GDS5227_4" }, { "dataset_id": "GDS5227", "description": "patient 283", "sample_id": [ "GSM1240691", "GSM1240685", "GSM1240679", "GSM1240690", "GSM1240684", "GSM1240678" ], "type": "individual", "id": "GDS5227_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5227", "version": 1.0, "instances": "18", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5227.tab", "compression": "gz" } ], [ [ "GDS5228.tab" ], { "title": "Hoxa1 deficiency effect on rhombomere regions 3 to 5", "description": "Analysis of rhombomere regions 3 to 5 from embryos lacking the homeobox protein Hoxa1. Hoxa1 is necessary for the development of the brainstem, inner ear and heart. Results identify the role of Hoxa1 during embryogenesis.", "type": "Expression profiling by array", "pubmed_id": "21784065", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE25868", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5228", "description": "wild type", "sample_id": [ "GSM635129", "GSM635130", "GSM635133", "GSM635134" ], "type": "genotype/variation", "id": "GDS5228_1" }, { "dataset_id": "GDS5228", "description": "Hoxa1 null", "sample_id": [ "GSM635131", "GSM635132", "GSM635135", "GSM635136" ], "type": "genotype/variation", "id": "GDS5228_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5228", "version": 1.0, "instances": "8", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5228.tab", "compression": "gz" } ], [ [ "GDS5229.tab" ], { "title": "Adam10 deficiency effect on the epidermis", "description": "Analysis of Adam10 deficient epidermis from newborn animals. Adam10 is a disintegrin and metalloproteinase. Results provide insight into the role of Adam10 in the epidermis.", "type": "Expression profiling by array", "pubmed_id": "21205794", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE25480", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5229", "description": "wild type", "sample_id": [ "GSM625965", "GSM625966", "GSM625967", "GSM625968" ], "type": "genotype/variation", "id": "GDS5229_1" }, { "dataset_id": "GDS5229", "description": "Adam10 null", "sample_id": [ "GSM625969", "GSM625970", "GSM625971", "GSM625972" ], "type": "genotype/variation", "id": "GDS5229_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5229", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5229.tab", "compression": "gz" } ], [ [ "GDS5230.tab" ], { "title": "miR-193b overexpression effect on pancreatic cell line", "description": "Analysis of MIA PaCa-2 pancreatic cancer cells overexpressing miR-193b. Aberrant expression of microRNAs occurs in various cancers, including pancreatic cancer. Results identify target genes of miR-193b.", "type": "Expression profiling by array", "pubmed_id": "22188669", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE25215", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5230", "description": "control", "sample_id": [ "GSM619302", "GSM619304" ], "type": "protocol", "id": "GDS5230_1" }, { "dataset_id": "GDS5230", "description": "miR-193 overexpression", "sample_id": [ "GSM619301", "GSM619303" ], "type": "protocol", "id": "GDS5230_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5230", "version": 1.0, "instances": "4", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5230.tab", "compression": "gz" } ], [ [ "GDS5231.tab" ], { "title": "Ankylosing spondylitis: blood", "description": "Analysis of whole blood samples from patients with ankylosing spondylitis (AS). AS is a chronic inflammatory rheumatic disease characterized by inflammation that leads to bone resorption and bone formation. Results provide insight into the molecular pathogenesis of AS.", "type": "Expression profiling by array", "pubmed_id": "21470430", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE25101", "order": "none", "update_date": "Sep 19 2014", "subsets": [ { "dataset_id": "GDS5231", "description": "ankylosing spondylitis", "sample_id": [ "GSM616668", "GSM616669", "GSM616670", "GSM616671", "GSM616672", "GSM616673", "GSM616674", "GSM616675", "GSM616676", "GSM616677", "GSM616678", "GSM616679", "GSM616680", "GSM616681", "GSM616682", "GSM616683" ], "type": "disease state", "id": "GDS5231_1" }, { "dataset_id": "GDS5231", "description": "control", "sample_id": [ "GSM616684", "GSM616685", "GSM616686", "GSM616687", "GSM616688", "GSM616689", "GSM616690", "GSM616691", "GSM616692", "GSM616693", "GSM616694", "GSM616695", "GSM616696", "GSM616697", "GSM616698", "GSM616699" ], "type": "disease state", "id": "GDS5231_2" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5231", "version": 1.0, "instances": "32", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5231.tab", "compression": "gz" } ], [ [ "GDS5232.tab" ], { "title": "Early and late onset colorectal cancers", "description": "Analysis of primary colorectal cancer (CRC) tumors from patients diagnosed with CRC at an early age (28 to 53 years of age) and patients diagnosed at a later age (69 to 87 years). Results identify genes associated with early onset CRC.", "type": "Expression profiling by array", "pubmed_id": "21716316", "platform": "GPL2986", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "32878", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "50", "value_type": "transformed count", "reference_series": "GSE25071", "order": "none", "update_date": "Sep 19 2014", "subsets": [ { "dataset_id": "GDS5232", "description": "young (28 - 53 y)", "sample_id": [ "GSM615945", "GSM615922", "GSM615919", "GSM615926", "GSM615918", "GSM615929", "GSM615941", "GSM615921", "GSM615952", "GSM615927", "GSM615940", "GSM615946", "GSM615951", "GSM615947", "GSM721722", "GSM615938", "GSM615939", "GSM615955", "GSM721724", "GSM615948", "GSM615953", "GSM615933", "GSM615931", "GSM615944", "GSM721723", "GSM615937", "GSM615925" ], "type": "age", "id": "GDS5232_1" }, { "dataset_id": "GDS5232", "description": "old (69 - 87 y)", "sample_id": [ "GSM615958", "GSM615935", "GSM721721", "GSM615954", "GSM721720", "GSM615917", "GSM615956", "GSM615943", "GSM615930", "GSM615932", "GSM615959", "GSM615924", "GSM615957", "GSM615920", "GSM615928", "GSM615934", "GSM615936", "GSM615942", "GSM615949", "GSM615950", "GSM615960", "GSM615961", "GSM615923" ], "type": "age", "id": "GDS5232_2" }, { "dataset_id": "GDS5232", "description": "female", "sample_id": [ "GSM615945", "GSM615922", "GSM615919", "GSM615926", "GSM615941", "GSM615921", "GSM615951", "GSM615947", "GSM615939", "GSM615948", "GSM615933", "GSM615944", "GSM615925", "GSM615958", "GSM615954", "GSM615917", "GSM615956", "GSM615920", "GSM615928", "GSM615934", "GSM615950", "GSM615923" ], "type": "gender", "id": "GDS5232_3" }, { "dataset_id": "GDS5232", "description": "male", "sample_id": [ "GSM615918", "GSM615929", "GSM615952", "GSM615927", "GSM615940", "GSM615946", "GSM721722", "GSM615938", "GSM615955", "GSM721724", "GSM615953", "GSM615931", "GSM721723", "GSM615937", "GSM615935", "GSM721721", "GSM721720", "GSM615943", "GSM615930", "GSM615932", "GSM615959", "GSM615924", "GSM615957", "GSM615936", "GSM615942", "GSM615949", "GSM615960", "GSM615961" ], "type": "gender", "id": "GDS5232_4" }, { "dataset_id": "GDS5232", "description": "primary colon cancer tumor", "sample_id": [ "GSM615945", "GSM615922", "GSM615919", "GSM615926", "GSM615941", "GSM615921", "GSM615951", "GSM615947", "GSM615939", "GSM615948", "GSM615933", "GSM615944", "GSM615925", "GSM615954", "GSM615917", "GSM615956", "GSM615920", "GSM615928", "GSM615934", "GSM615950", "GSM615923", "GSM615918", "GSM615929", "GSM615952", "GSM615927", "GSM615940", "GSM615946", "GSM721722", "GSM615938", "GSM615955", "GSM721724", "GSM615953", "GSM615931", "GSM721723", "GSM615937", "GSM615935", "GSM721721", "GSM721720", "GSM615943", "GSM615930", "GSM615932", "GSM615924", "GSM615957", "GSM615936", "GSM615942", "GSM615949" ], "type": "tissue", "id": "GDS5232_5" }, { "dataset_id": "GDS5232", "description": "normal colon", "sample_id": [ "GSM615958", "GSM615959", "GSM615960", "GSM615961" ], "type": "tissue", "id": "GDS5232_6" } ], "taxid": "9606", "genes": 30389, "aggregation_function": "mean", "name": "GDS5232", "version": 1.0, "instances": "50", "variables": 30393, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5232.tab", "compression": "gz" } ], [ [ "GDS5233.tab" ], { "title": "Bisphenol A effect on the fetal urogenital sinus: time course", "description": "Analysis of urogenital sinuses (UGS) of male fetuses exposed to bisphenol A. BPA is a ubiquitous, estrogenic chemical used in the production of polycarbonate plastics. UGS examined at embryonic days 17 and 18, and postnatal day 0. Results provide insight into the molecular effects of BPA on UGS.", "type": "Expression profiling by array", "pubmed_id": "21123812", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE24928", "order": "none", "update_date": "Oct 09 2014", "subsets": [ { "dataset_id": "GDS5233", "description": "vehicle", "sample_id": [ "GSM612931", "GSM612932", "GSM612933" ], "type": "agent", "id": "GDS5233_1" }, { "dataset_id": "GDS5233", "description": "diethylstilbestrol", "sample_id": [ "GSM612934", "GSM612935", "GSM612936" ], "type": "agent", "id": "GDS5233_2" }, { "dataset_id": "GDS5233", "description": "bisphenol A", "sample_id": [ "GSM612937", "GSM612938", "GSM612939" ], "type": "agent", "id": "GDS5233_3" }, { "dataset_id": "GDS5233", "description": "E 17", "sample_id": [ "GSM612931", "GSM612934", "GSM612937" ], "type": "age", "id": "GDS5233_4" }, { "dataset_id": "GDS5233", "description": "E 18", "sample_id": [ "GSM612932", "GSM612935", "GSM612938" ], "type": "age", "id": "GDS5233_5" }, { "dataset_id": "GDS5233", "description": "P 0", "sample_id": [ "GSM612933", "GSM612936", "GSM612939" ], "type": "age", "id": "GDS5233_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5233", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5233.tab", "compression": "gz" } ], [ [ "GDS5234.tab" ], { "title": "Dicer deficiency effect on preadipocytes", "description": "Analysis of preadipocytes inactived for Dicer in vitro. Dicer, an endonuclease of the RNase III family, is involved in the processing of microRNAs. Results provide insight into the role of Dicer in adipocytes.", "type": "Expression profiling by array", "pubmed_id": "22958919", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE24683", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5234", "description": "control", "sample_id": [ "GSM608130", "GSM608131", "GSM608132", "GSM608133" ], "type": "genotype/variation", "id": "GDS5234_1" }, { "dataset_id": "GDS5234", "description": "Dicer null", "sample_id": [ "GSM608134", "GSM608135", "GSM608136", "GSM608137" ], "type": "genotype/variation", "id": "GDS5234_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5234", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5234.tab", "compression": "gz" } ], [ [ "GDS5235.tab" ], { "title": "Lamin A exon 9 deletion effect on fibroblasts", "description": "Analysis of fibroblasts from mutants deleted for exon 9 of Lamin A (LMNA). Mutant deleted for exon 9 of LMNA is a model for the segmental premature aging disease Hutchinson-Gilford Progeria (HGPS). Results provide insight into the molecular etiology and pathology of HGPS.", "type": "Expression profiling by array", "pubmed_id": "20833363", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23495", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5235", "description": "Lamin A exon 9 deletion", "sample_id": [ "GSM575562", "GSM575563", "GSM575564" ], "type": "genotype/variation", "id": "GDS5235_1" }, { "dataset_id": "GDS5235", "description": "wild type", "sample_id": [ "GSM575565", "GSM575566", "GSM575567" ], "type": "genotype/variation", "id": "GDS5235_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5235", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5235.tab", "compression": "gz" } ], [ [ "GDS5236.tab" ], { "title": "Sarcolipin deficiency effect on heart atrium", "description": "Analysis of atria from mutants deficient for sarcolipin (SLN). SLN is a sarcoplasmic reticulum membrane protein expressed in atria and a regulator of cardiac SR CA2+ ATPase. Result provide further insight into the role of SLN in atrial CA2+ homeostasis.", "type": "Expression profiling by array", "pubmed_id": "22496245", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE23403", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5236", "description": "wild type", "sample_id": [ "GSM574100", "GSM574101", "GSM574102" ], "type": "genotype/variation", "id": "GDS5236_1" }, { "dataset_id": "GDS5236", "description": "SLN null", "sample_id": [ "GSM574103", "GSM574104", "GSM574105" ], "type": "genotype/variation", "id": "GDS5236_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5236", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5236.tab", "compression": "gz" } ], [ [ "GDS5237.tab" ], { "title": "20-hydroxyecdysone effect on skeletal muscle: time course", "description": "Analysis of triceps brachii muscles from C57BL/6 animals given a continuous infusion of 20-hydroxyecdysone (20E) for 5 or 15 days. 20E is an abundant phytoecdysteroid. Results provide insight into the molecular effect of 20E on skeletal muscles.", "type": "Expression profiling by array", "pubmed_id": "22495969", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE23121", "order": "none", "update_date": "Oct 09 2014", "subsets": [ { "dataset_id": "GDS5237", "description": "20E", "sample_id": [ "GSM569781", "GSM569780", "GSM569779", "GSM569787", "GSM569785", "GSM569786" ], "type": "agent", "id": "GDS5237_1" }, { "dataset_id": "GDS5237", "description": "saline", "sample_id": [ "GSM569783", "GSM569784", "GSM569782", "GSM569788", "GSM569790", "GSM569789" ], "type": "agent", "id": "GDS5237_2" }, { "dataset_id": "GDS5237", "description": "5 d", "sample_id": [ "GSM569783", "GSM569784", "GSM569782", "GSM569781", "GSM569780", "GSM569779" ], "type": "time", "id": "GDS5237_3" }, { "dataset_id": "GDS5237", "description": "15 d", "sample_id": [ "GSM569788", "GSM569790", "GSM569789", "GSM569787", "GSM569785", "GSM569786" ], "type": "time", "id": "GDS5237_4" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5237", "version": 1.0, "instances": "12", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5237.tab", "compression": "gz" } ], [ [ "GDS5238.tab" ], { "title": "Ubiquitin carboxyl hydrolase BAP1 depletion effect on osteosarcoma cell line", "description": "Analysis of U2OS osteosarcoma cells depleted for the ubiquitin carboxyl hydrolase BAP1. BAP1 is a deubiquitinating enzyme. Results provide insight into the role of BAP1 in transcriptional regulation.", "type": "Expression profiling by array", "pubmed_id": "20805357", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE23035", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5238", "description": "control", "sample_id": [ "GSM568505", "GSM568506", "GSM568507" ], "type": "protocol", "id": "GDS5238_1" }, { "dataset_id": "GDS5238", "description": "BAP1 depletion", "sample_id": [ "GSM568508", "GSM568509", "GSM568510", "GSM568511", "GSM568512", "GSM568513" ], "type": "protocol", "id": "GDS5238_2" }, { "dataset_id": "GDS5238", "description": "control construct", "sample_id": [ "GSM568505", "GSM568506", "GSM568507" ], "type": "other", "id": "GDS5238_3" }, { "dataset_id": "GDS5238", "description": "BAP contruct 1", "sample_id": [ "GSM568508", "GSM568509", "GSM568510" ], "type": "other", "id": "GDS5238_4" }, { "dataset_id": "GDS5238", "description": "BAP contruct 2", "sample_id": [ "GSM568511", "GSM568512", "GSM568513" ], "type": "other", "id": "GDS5238_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5238", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5238.tab", "compression": "gz" } ], [ [ "GDS5239.tab" ], { "title": "Skin response to injury: time course", "description": "Analysis of skin samples recovering from injury for up to 10 days following wounding inflicted via punch biopsy. Results compared to those from injured oral mucosae (GDS5240) and provide insight into the molecular differences in wound healing between the skin and oral mucosa.", "type": "Expression profiling by array", "pubmed_id": "20704739", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE23006", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5239", "description": "none", "sample_id": [ "GSM567621", "GSM567622", "GSM567623" ], "type": "stress", "id": "GDS5239_1" }, { "dataset_id": "GDS5239", "description": "wound", "sample_id": [ "GSM567627", "GSM567628", "GSM567629", "GSM567633", "GSM567634", "GSM567635", "GSM567639", "GSM567640", "GSM567641", "GSM567645", "GSM567646", "GSM567647", "GSM567651", "GSM567652", "GSM567653", "GSM567657", "GSM567658", "GSM567659", "GSM567663", "GSM567664", "GSM567665" ], "type": "stress", "id": "GDS5239_2" }, { "dataset_id": "GDS5239", "description": "control", "sample_id": [ "GSM567621", "GSM567622", "GSM567623" ], "type": "time", "id": "GDS5239_3" }, { "dataset_id": "GDS5239", "description": "6 h", "sample_id": [ "GSM567627", "GSM567628", "GSM567629" ], "type": "time", "id": "GDS5239_4" }, { "dataset_id": "GDS5239", "description": "12 h", "sample_id": [ "GSM567633", "GSM567634", "GSM567635" ], "type": "time", "id": "GDS5239_5" }, { "dataset_id": "GDS5239", "description": "24 h", "sample_id": [ "GSM567639", "GSM567640", "GSM567641" ], "type": "time", "id": "GDS5239_6" }, { "dataset_id": "GDS5239", "description": "3 d", "sample_id": [ "GSM567645", "GSM567646", "GSM567647" ], "type": "time", "id": "GDS5239_7" }, { "dataset_id": "GDS5239", "description": "5 d", "sample_id": [ "GSM567651", "GSM567652", "GSM567653" ], "type": "time", "id": "GDS5239_8" }, { "dataset_id": "GDS5239", "description": "7 d", "sample_id": [ "GSM567657", "GSM567658", "GSM567659" ], "type": "time", "id": "GDS5239_9" }, { "dataset_id": "GDS5239", "description": "10 d", "sample_id": [ "GSM567663", "GSM567664", "GSM567665" ], "type": "time", "id": "GDS5239_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5239", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5239.tab", "compression": "gz" } ], [ [ "GDS524.tab" ], { "title": "Intestinal tract gene expression (MG-U74C)", "description": "Analysis of regional differences in gene expression profiles along the intestinal tract. Duodenum, jejunum, ileum, and colon of 8 week-old male Hsd:ICR(CD-1) mice examined.", "type": "Expression profiling by array", "pubmed_id": "14679303", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE849", "order": "none", "update_date": "Mar 26 2004", "subsets": [ { "dataset_id": "GDS524", "description": "duodenum", "sample_id": [ "GSM13186", "GSM13187", "GSM13188" ], "type": "tissue", "id": "GDS524_1" }, { "dataset_id": "GDS524", "description": "jejunum", "sample_id": [ "GSM13192", "GSM13193", "GSM13194" ], "type": "tissue", "id": "GDS524_2" }, { "dataset_id": "GDS524", "description": "ileum", "sample_id": [ "GSM13189", "GSM13190", "GSM13191" ], "type": "tissue", "id": "GDS524_3" }, { "dataset_id": "GDS524", "description": "colon", "sample_id": [ "GSM13183", "GSM13184", "GSM13185" ], "type": "tissue", "id": "GDS524_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS524", "version": 1.0, "instances": "12", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS524.tab", "compression": "gz" } ], [ [ "GDS5240.tab" ], { "title": "Oral mucosa response to injury: time course", "description": "Analysis of oral mucosae of tongues recovering from injury for up to 10 days following wounding inflicted via punch biopsy. Results compared to those from injured skin (GDS5239) and provide insight into the molecular differences in wound healing between the skin and oral mucosa.", "type": "Expression profiling by array", "pubmed_id": "20704739", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE23006", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5240", "description": "none", "sample_id": [ "GSM567618", "GSM567619", "GSM567620" ], "type": "stress", "id": "GDS5240_1" }, { "dataset_id": "GDS5240", "description": "wound", "sample_id": [ "GSM567624", "GSM567625", "GSM567626", "GSM567630", "GSM567631", "GSM567632", "GSM567636", "GSM567637", "GSM567638", "GSM567642", "GSM567643", "GSM567644", "GSM567648", "GSM567649", "GSM567650", "GSM567654", "GSM567655", "GSM567656", "GSM567660", "GSM567661", "GSM567662" ], "type": "stress", "id": "GDS5240_2" }, { "dataset_id": "GDS5240", "description": "control", "sample_id": [ "GSM567618", "GSM567619", "GSM567620" ], "type": "time", "id": "GDS5240_3" }, { "dataset_id": "GDS5240", "description": "6 h", "sample_id": [ "GSM567624", "GSM567625", "GSM567626" ], "type": "time", "id": "GDS5240_4" }, { "dataset_id": "GDS5240", "description": "12 h", "sample_id": [ "GSM567630", "GSM567631", "GSM567632" ], "type": "time", "id": "GDS5240_5" }, { "dataset_id": "GDS5240", "description": "24 h", "sample_id": [ "GSM567636", "GSM567637", "GSM567638" ], "type": "time", "id": "GDS5240_6" }, { "dataset_id": "GDS5240", "description": "3 d", "sample_id": [ "GSM567642", "GSM567643", "GSM567644" ], "type": "time", "id": "GDS5240_7" }, { "dataset_id": "GDS5240", "description": "5 d", "sample_id": [ "GSM567648", "GSM567649", "GSM567650" ], "type": "time", "id": "GDS5240_8" }, { "dataset_id": "GDS5240", "description": "7 d", "sample_id": [ "GSM567654", "GSM567655", "GSM567656" ], "type": "time", "id": "GDS5240_9" }, { "dataset_id": "GDS5240", "description": "10 d", "sample_id": [ "GSM567660", "GSM567661", "GSM567662" ], "type": "time", "id": "GDS5240_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5240", "version": 1.0, "instances": "24", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5240.tab", "compression": "gz" } ], [ [ "GDS5241.tab" ], { "title": "Transcription factor engrailed-2 loss-of-function model of autism spectrum disorder: cerebellum", "description": "Analysis of cerebellar samples from engrailed-2 (En2) mutant adults. The En2-/- animals are a model for autism spectrum disorder (ASD). The cerebellum is a brain area profoundly affected in ASD patients. Results provide insight into molecular mechanisms underlying ASD-related neuropathology.", "type": "Expression profiling by array", "pubmed_id": "24355397", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE51612", "order": "none", "update_date": "Jan 12 2016", "subsets": [ { "dataset_id": "GDS5241", "description": "En2 wildtype", "sample_id": [ "GSM1249173", "GSM1249172", "GSM1249171" ], "type": "genotype/variation", "id": "GDS5241_1" }, { "dataset_id": "GDS5241", "description": "En2 knockout", "sample_id": [ "GSM1249176", "GSM1249175", "GSM1249174" ], "type": "genotype/variation", "id": "GDS5241_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5241", "version": 1.0, "instances": "6", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5241.tab", "compression": "gz" } ], [ [ "GDS5242.tab" ], { "title": "Interleukin-21 effect on STAT3-deficient na\u00efve B cells from autosomal dominant hyper IgE syndrome patients", "description": "Analysis of na\u00efve B cells purified from peripheral blood of AD-HIES patients with STAT3 loss-of-function mutation and then cultured with CD40 ligand alone or together with interleukin-21. Results provide insight into IL-21R/STAT3 signaling induced genes underlying na\u00efve B cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "24159173", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE51587", "order": "none", "update_date": "Jan 12 2016", "subsets": [ { "dataset_id": "GDS5242", "description": "donor 1", "sample_id": [ "GSM1248745", "GSM1248749" ], "type": "individual", "id": "GDS5242_1" }, { "dataset_id": "GDS5242", "description": "donor 2", "sample_id": [ "GSM1248746", "GSM1248750" ], "type": "individual", "id": "GDS5242_2" }, { "dataset_id": "GDS5242", "description": "donor 3", "sample_id": [ "GSM1248751", "GSM1248747" ], "type": "individual", "id": "GDS5242_3" }, { "dataset_id": "GDS5242", "description": "donor 4", "sample_id": [ "GSM1248748", "GSM1248752" ], "type": "individual", "id": "GDS5242_4" }, { "dataset_id": "GDS5242", "description": "patient 1", "sample_id": [ "GSM1248753", "GSM1248756" ], "type": "individual", "id": "GDS5242_5" }, { "dataset_id": "GDS5242", "description": "patient 2", "sample_id": [ "GSM1248757", "GSM1248754" ], "type": "individual", "id": "GDS5242_6" }, { "dataset_id": "GDS5242", "description": "patient 3", "sample_id": [ "GSM1248755", "GSM1248758" ], "type": "individual", "id": "GDS5242_7" }, { "dataset_id": "GDS5242", "description": "normal", "sample_id": [ "GSM1248745", "GSM1248746", "GSM1248747", "GSM1248748", "GSM1248749", "GSM1248750", "GSM1248751", "GSM1248752" ], "type": "disease state", "id": "GDS5242_8" }, { "dataset_id": "GDS5242", "description": "autosomal dominant hyper IgE syndrome", "sample_id": [ "GSM1248753", "GSM1248754", "GSM1248755", "GSM1248756", "GSM1248757", "GSM1248758" ], "type": "disease state", "id": "GDS5242_9" }, { "dataset_id": "GDS5242", "description": "CD40L stimulation", "sample_id": [ "GSM1248745", "GSM1248746", "GSM1248747", "GSM1248748", "GSM1248753", "GSM1248754", "GSM1248755" ], "type": "protocol", "id": "GDS5242_10" }, { "dataset_id": "GDS5242", "description": "CD40L + IL21 stimulation", "sample_id": [ "GSM1248749", "GSM1248750", "GSM1248751", "GSM1248752", "GSM1248756", "GSM1248757", "GSM1248758" ], "type": "protocol", "id": "GDS5242_11" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5242", "version": 1.0, "instances": "14", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5242.tab", "compression": "gz" } ], [ [ "GDS5243.tab" ], { "title": "Mmp-8 deficient ankle joint response to the induction of arthritis", "description": "Analysis of ankle joints of Mmp-8 deficient mutants following treatment with sera from K/BxN mice to induce arthritis. Mmp-8 encodes a metalloproteinase. Results compared to arthritic ankles from wild type animals (GDS5244) and provide insight into the role of Mmp-8 in the pathogenesis of arthritis.", "type": "Expression profiling by array", "pubmed_id": "21190566", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE22971", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5243", "description": "control", "sample_id": [ "GSM567074", "GSM567075", "GSM567076" ], "type": "disease state", "id": "GDS5243_1" }, { "dataset_id": "GDS5243", "description": "arthritis", "sample_id": [ "GSM567080", "GSM567081", "GSM567082" ], "type": "disease state", "id": "GDS5243_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5243", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5243.tab", "compression": "gz" } ], [ [ "GDS5244.tab" ], { "title": "Ankle joint response to the induction of arthritis", "description": "Analysis of ankle joints of wild type animals following treatment with sera from K/BxN mice to induce arthritis. Results compared to arthritic ankles from Mmp-8 deficient mutants (GDS5243) and provide insight into the role of Mmp-8 in the pathogenesis of arthritis.", "type": "Expression profiling by array", "pubmed_id": "21190566", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE22971", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5244", "description": "control", "sample_id": [ "GSM567071", "GSM567072", "GSM567073" ], "type": "disease state", "id": "GDS5244_1" }, { "dataset_id": "GDS5244", "description": "arthritis", "sample_id": [ "GSM567077", "GSM567078", "GSM567079" ], "type": "disease state", "id": "GDS5244_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5244", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5244.tab", "compression": "gz" } ], [ [ "GDS5245.tab" ], { "title": "Allergic asthma: alveolar macrophage", "description": "Comparison of alvelolar macrophages (AMs) of allergic asthma (AA) patients and healthy subjects. AMs are the main immune cells in the airway lumen and are in direct contact with exogenous agents. Results provide insight into the differences between the AMs of AA patients and healthy individuals.", "type": "Expression profiling by array", "pubmed_id": "19913588", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE22528", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5245", "description": "control", "sample_id": [ "GSM559371", "GSM559372", "GSM559373", "GSM559374", "GSM559375" ], "type": "disease state", "id": "GDS5245_1" }, { "dataset_id": "GDS5245", "description": "allergic asthma", "sample_id": [ "GSM559376", "GSM559377", "GSM559378", "GSM559379", "GSM559380" ], "type": "disease state", "id": "GDS5245_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5245", "version": 1.0, "instances": "10", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5245.tab", "compression": "gz" } ], [ [ "GDS5246.tab" ], { "title": "Oligodendroglial cell model of multiple system atrophy: time course", "description": "Analysis of oligodendroglia stably expressing \u03b1-synuclein and transiently expressing p25\u03b1 for up to 16 hrs. Coexpression of \u03b1 -synuclein and p25\u03b1 causes a degenerative phenotype modeling multiple system atrophy (MSA). Results provide insight into the molecular basis of MSA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24361600", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE51781", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5246", "description": "mock transfected", "sample_id": [ "GSM1252435", "GSM1252434", "GSM1252438", "GSM1252439", "GSM1252430", "GSM1252431" ], "type": "protocol", "id": "GDS5246_1" }, { "dataset_id": "GDS5246", "description": "p25\u03b1 transfected", "sample_id": [ "GSM1252436", "GSM1252437", "GSM1252440", "GSM1252441", "GSM1252432", "GSM1252433" ], "type": "protocol", "id": "GDS5246_2" }, { "dataset_id": "GDS5246", "description": "8 hrs", "sample_id": [ "GSM1252433", "GSM1252432", "GSM1252431", "GSM1252430" ], "type": "time", "id": "GDS5246_3" }, { "dataset_id": "GDS5246", "description": "12 hrs", "sample_id": [ "GSM1252437", "GSM1252436", "GSM1252434", "GSM1252435" ], "type": "time", "id": "GDS5246_4" }, { "dataset_id": "GDS5246", "description": "16 hrs", "sample_id": [ "GSM1252441", "GSM1252440", "GSM1252439", "GSM1252438" ], "type": "time", "id": "GDS5246_5" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5246", "version": 1.0, "instances": "12", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5246.tab", "compression": "gz" } ], [ [ "GDS5247.tab" ], { "title": "Cisplatin-resistant non-small cell lung cancer cell line", "description": "Analysis of cisplatin-resistant lung cancer cells derived from the non-small cell lung cancer (NSCLC) cell line H460. Results provide insight into the molecular mechanisms underlying the development of cisplatin resistance in NSCLC.", "type": "Expression profiling by array", "pubmed_id": "22197230", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE21656", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5247", "description": "parental H460", "sample_id": [ "GSM540420", "GSM540421", "GSM540422" ], "type": "cell line", "id": "GDS5247_1" }, { "dataset_id": "GDS5247", "description": "cisplatin resistant line derived from H460", "sample_id": [ "GSM540423", "GSM540424", "GSM540425" ], "type": "cell line", "id": "GDS5247_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5247", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5247.tab", "compression": "gz" } ], [ [ "GDS5248.tab" ], { "title": "KSR2 deficiency effect on white adipose tissue", "description": "Analysis of white adipose tissues of mutants lacking the kinase suppressor of Ras 2 (KSR2). KSR2 functions as a molecular scaffold to regulate the MAP kinases ERK1/2. Result provide insight into the role of KSR2 in white adipose tissues.", "type": "Expression profiling by array", "pubmed_id": "19883615", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE17923", "order": "none", "update_date": "Sep 23 2014", "subsets": [ { "dataset_id": "GDS5248", "description": "wild type", "sample_id": [ "GSM447606", "GSM447609", "GSM447768" ], "type": "genotype/variation", "id": "GDS5248_1" }, { "dataset_id": "GDS5248", "description": "KSR2 null", "sample_id": [ "GSM447605", "GSM447607", "GSM447749" ], "type": "genotype/variation", "id": "GDS5248_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5248", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5248.tab", "compression": "gz" } ], [ [ "GDS5249.tab" ], { "title": "Bicaudal C homolog 1 knock down effect in primary calvarial osteoblasts", "description": "Analysis of calvarial osteoblasts transfected with siRNAs targeting bicaudal C homolog 1 (constructs BICC1_1, BICC1_2 and BICC1_3). Bicc1 encodes an RNA-binding protein. Results provide insight into the role of Bicc in osteoblastogenesis.", "type": "Expression profiling by array", "pubmed_id": "24789909", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE51693", "order": "none", "update_date": "Feb 05 2015", "subsets": [ { "dataset_id": "GDS5249", "description": "Bicc1_1 (BICC1MSS294526) siRNA transfected", "sample_id": [ "GSM1250619", "GSM1250617", "GSM1250609", "GSM1250608" ], "type": "protocol", "id": "GDS5249_1" }, { "dataset_id": "GDS5249", "description": "Bicc1_2 (BICC1MSS234735) siRNA transfected", "sample_id": [ "GSM1250620", "GSM1250616", "GSM1250610", "GSM1250607" ], "type": "protocol", "id": "GDS5249_2" }, { "dataset_id": "GDS5249", "description": "Bicc1_3 (BICC1MSS234736) siRNA transfected", "sample_id": [ "GSM1250622", "GSM1250618", "GSM1250613", "GSM1250612" ], "type": "protocol", "id": "GDS5249_3" }, { "dataset_id": "GDS5249", "description": "scramble control siRNA transfected", "sample_id": [ "GSM1250621", "GSM1250615", "GSM1250614", "GSM1250611" ], "type": "protocol", "id": "GDS5249_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5249", "version": 1.0, "instances": "16", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5249.tab", "compression": "gz" } ], [ [ "GDS525.tab" ], { "title": "Extraocular and limb muscle comparison", "description": "Molecular definition of extraocular muscle (EOM). Autopsy superior rectus EOM compared with biopsy limb quadriceps femoris muscle.", "type": "Expression profiling by array", "pubmed_id": "15855387", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE873", "order": "none", "update_date": "Mar 26 2004", "subsets": [ { "dataset_id": "GDS525", "description": "extraocular", "sample_id": [ "GSM10504", "GSM13416" ], "type": "tissue", "id": "GDS525_1" }, { "dataset_id": "GDS525", "description": "quadriceps femoris", "sample_id": [ "GSM13417", "GSM13418", "GSM13419" ], "type": "tissue", "id": "GDS525_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS525", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS525.tab", "compression": "gz" } ], [ [ "GDS5250.tab" ], { "title": "Striatal-enriched protein tyrosine phosphatase (STEP) knockout effect on striatum", "description": "Analysis of striatum from striatal-enriched protein tyrosine phosphatase (STEP)+/- and -/- littermates. Brain-specific tyrosine phosphatase STEP is associated with de-phosphorylation of several key neuronal signaling proteins. Results provide insight into role of STEP in synaptic plasticity.", "type": "Expression profiling by array", "pubmed_id": "25130559", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE51678", "order": "none", "update_date": "Feb 05 2015", "subsets": [ { "dataset_id": "GDS5250", "description": "homozygous STEP KO", "sample_id": [ "GSM1250429", "GSM1250430", "GSM1250431", "GSM1250432" ], "type": "genotype/variation", "id": "GDS5250_1" }, { "dataset_id": "GDS5250", "description": "heterozygous STEP KO", "sample_id": [ "GSM1250424", "GSM1250425", "GSM1250426", "GSM1250427", "GSM1250428" ], "type": "genotype/variation", "id": "GDS5250_2" }, { "dataset_id": "GDS5250", "description": "wild type STEP", "sample_id": [ "GSM1250420", "GSM1250421", "GSM1250422", "GSM1250423" ], "type": "genotype/variation", "id": "GDS5250_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5250", "version": 1.0, "instances": "13", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5250.tab", "compression": "gz" } ], [ [ "GDS5251.tab" ], { "title": "Bacterial lipopolysaccharide endotoxin stimulation effect on hepatic stellate cells: time course (experiment 2)", "description": "Analysis of hepatic stellate cells (HSCs) cultured with LPS for 1 and 24 hr. During exposure to toxins such as LPS, the liver suffers inflammatory injury. Results provide insight into molecular mechanisms underlying hepatic inflammatory and immune responses.", "type": "Expression profiling by array", "pubmed_id": "24349206", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE49980", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5251", "description": "hour 1", "sample_id": [ "GSM1211058", "GSM1211051", "GSM1211059", "GSM1211052" ], "type": "time", "id": "GDS5251_1" }, { "dataset_id": "GDS5251", "description": "hour 24", "sample_id": [ "GSM1211061", "GSM1211057", "GSM1211060", "GSM1211056" ], "type": "time", "id": "GDS5251_2" }, { "dataset_id": "GDS5251", "description": "lipopolysaccharide", "sample_id": [ "GSM1211060", "GSM1211056", "GSM1211059", "GSM1211052" ], "type": "agent", "id": "GDS5251_3" }, { "dataset_id": "GDS5251", "description": "control", "sample_id": [ "GSM1211061", "GSM1211057", "GSM1211058", "GSM1211051" ], "type": "agent", "id": "GDS5251_4" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5251", "version": 1.0, "instances": "8", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5251.tab", "compression": "gz" } ], [ [ "GDS5252.tab" ], { "title": "Bacterial lipopolysaccharide endotoxin stimulation effect on hepatic stellate cells: time course (experiment 1)", "description": "Analysis of hepatic stellate cells (HSCs) cultured with LPS for 1, 3, 6, 12, 24 hr. During exposure to toxins such as LPS, the liver suffers inflammatory injury. Results provide insight into molecular mechanisms underlying hepatic inflammatory and immune responses.", "type": "Expression profiling by array", "pubmed_id": "24349206", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE49980", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5252", "description": "hour 1", "sample_id": [ "GSM1211058", "GSM1211051", "GSM1211059", "GSM1211052" ], "type": "time", "id": "GDS5252_1" }, { "dataset_id": "GDS5252", "description": "hour 3", "sample_id": [ "GSM1211053" ], "type": "time", "id": "GDS5252_2" }, { "dataset_id": "GDS5252", "description": "hour 6", "sample_id": [ "GSM1211054" ], "type": "time", "id": "GDS5252_3" }, { "dataset_id": "GDS5252", "description": "hour 12", "sample_id": [ "GSM1211055" ], "type": "time", "id": "GDS5252_4" }, { "dataset_id": "GDS5252", "description": "hour 24", "sample_id": [ "GSM1211061", "GSM1211057", "GSM1211060", "GSM1211056" ], "type": "time", "id": "GDS5252_5" }, { "dataset_id": "GDS5252", "description": "lipopolysaccharide", "sample_id": [ "GSM1211054", "GSM1211053", "GSM1211060", "GSM1211056", "GSM1211059", "GSM1211052", "GSM1211055" ], "type": "agent", "id": "GDS5252_6" }, { "dataset_id": "GDS5252", "description": "control", "sample_id": [ "GSM1211061", "GSM1211057", "GSM1211058", "GSM1211051" ], "type": "agent", "id": "GDS5252_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5252", "version": 1.0, "instances": "11", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5252.tab", "compression": "gz" } ], [ [ "GDS5253.tab" ], { "title": "miR-24 overexpression effect on HepG2 liver cells", "description": "Analysis of HepG2 liver cells overexpressing miR-24. miR-24 is upregulated during the terminal differentiation of various types of cells. HepG2 cells have low endogenous miR-24 levels. Results identify target genes of miR-24.", "type": "Expression profiling by array", "pubmed_id": "19748357", "platform": "GPL5104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "20589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE17828", "order": "none", "update_date": "Oct 15 2014", "subsets": [ { "dataset_id": "GDS5253", "description": "control", "sample_id": [ "GSM444792", "GSM444793" ], "type": "protocol", "id": "GDS5253_1" }, { "dataset_id": "GDS5253", "description": "miR-24 overexpression", "sample_id": [ "GSM444794", "GSM444795" ], "type": "protocol", "id": "GDS5253_2" } ], "taxid": "9606", "genes": 18739, "aggregation_function": "mean", "name": "GDS5253", "version": 1.0, "instances": "4", "variables": 18741, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5253.tab", "compression": "gz" } ], [ [ "GDS5254.tab" ], { "title": "Pirin depletion effect on myelomonocytic cell line", "description": "Analysis of U937 myelomonocytic cells depleted for Pirin. Pirin is silenced in cells with the acute myeloid leukemia-1 eight-twenty-one and promyelocytic leukemia/retinoic acid receptor leukemogenic fusion proteins. Results provide insight into the role of Pirin in myeloid differentiation.", "type": "Expression profiling by array", "pubmed_id": "20010624", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE16798", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5254", "description": "Pirin depletion", "sample_id": [ "GSM421933", "GSM421934" ], "type": "protocol", "id": "GDS5254_1" }, { "dataset_id": "GDS5254", "description": "control", "sample_id": [ "GSM421935", "GSM421936" ], "type": "protocol", "id": "GDS5254_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5254", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5254.tab", "compression": "gz" } ], [ [ "GDS5255.tab" ], { "title": "Diabetic lung", "description": "Analysis of lungs of diabetic animals. Diabetes induced by streptozotocin treatment. Results provide insight into the impact of diabetes on the cellular and molecular processes in the lung.", "type": "Expression profiling by array", "pubmed_id": "24423257", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE15900", "order": "none", "update_date": "Sep 24 2014", "subsets": [ { "dataset_id": "GDS5255", "description": "control", "sample_id": [ "GSM399092", "GSM399093", "GSM399096", "GSM399098", "GSM399099" ], "type": "disease state", "id": "GDS5255_1" }, { "dataset_id": "GDS5255", "description": "diabetes", "sample_id": [ "GSM399102", "GSM399104", "GSM399109", "GSM399112", "GSM399114", "GSM399115", "GSM399116" ], "type": "disease state", "id": "GDS5255_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS5255", "version": 1.0, "instances": "12", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5255.tab", "compression": "gz" } ], [ [ "GDS5256.tab" ], { "title": "Caveolin-1 deficiency effect on dexamethasone treatment: embryonic day E14.5 cerebral cortex", "description": "Analysis of E14.5 cerebral cortex, Caveolin-1 (Cav-1) deficient, cultured neurospheres treated with glucocorticoid (GC) dexamethasone (100nM, 4h). Cav-1 involved in GC signaling in neural stem cells. Results provide insight into role of Cav-1 in GC treatment and impact fetal brain development.", "type": "Expression profiling by array", "pubmed_id": "24777604", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE49804", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5256", "description": "Caveolin-1 knockout", "sample_id": [ "GSM1207282", "GSM1207278", "GSM1207274", "GSM1207266", "GSM1207270", "GSM1207281", "GSM1207277", "GSM1207273", "GSM1207269", "GSM1207265" ], "type": "genotype/variation", "id": "GDS5256_1" }, { "dataset_id": "GDS5256", "description": "C57 Bl/6 wild type", "sample_id": [ "GSM1207280", "GSM1207276", "GSM1207272", "GSM1207264", "GSM1207268", "GSM1207279", "GSM1207275", "GSM1207271", "GSM1207267", "GSM1207263" ], "type": "genotype/variation", "id": "GDS5256_2" }, { "dataset_id": "GDS5256", "description": "dexamethasone", "sample_id": [ "GSM1207281", "GSM1207277", "GSM1207273", "GSM1207269", "GSM1207265", "GSM1207279", "GSM1207275", "GSM1207271", "GSM1207267", "GSM1207263" ], "type": "agent", "id": "GDS5256_3" }, { "dataset_id": "GDS5256", "description": "vehicle", "sample_id": [ "GSM1207282", "GSM1207278", "GSM1207274", "GSM1207266", "GSM1207270", "GSM1207280", "GSM1207276", "GSM1207272", "GSM1207264", "GSM1207268" ], "type": "agent", "id": "GDS5256_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5256", "version": 1.0, "instances": "20", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5256.tab", "compression": "gz" } ], [ [ "GDS5257.tab" ], { "title": "Calyx of Held synaptic development: globular bushy cells", "description": "Analysis of calyx of Held globular bushy cells at different maturation stages: P3, P8 and P21. Calyx of Held presynaptic terminals in the auditory brainstem develop into axosomatic synapses. Results provide insight into mechanisms underlying development of mammalian synaptic structure and function.", "type": "Expression profiling by array", "pubmed_id": "24995587", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE49599", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5257", "description": "postnatal day 3", "sample_id": [ "GSM1202424", "GSM1202425", "GSM1202426", "GSM1202427", "GSM1202428", "GSM1202429" ], "type": "development stage", "id": "GDS5257_1" }, { "dataset_id": "GDS5257", "description": "postnatal day 8", "sample_id": [ "GSM1202430", "GSM1202431", "GSM1202432", "GSM1202433", "GSM1202434", "GSM1202435", "GSM1202436", "GSM1202437", "GSM1202438" ], "type": "development stage", "id": "GDS5257_2" }, { "dataset_id": "GDS5257", "description": "postnatal day 21", "sample_id": [ "GSM1202439", "GSM1202440", "GSM1202441", "GSM1202442", "GSM1202443" ], "type": "development stage", "id": "GDS5257_3" }, { "dataset_id": "GDS5257", "description": "just formed calyx GBC", "sample_id": [ "GSM1202424", "GSM1202425", "GSM1202426", "GSM1202427", "GSM1202428", "GSM1202429" ], "type": "cell type", "id": "GDS5257_4" }, { "dataset_id": "GDS5257", "description": "juvenile calyx GBC", "sample_id": [ "GSM1202430", "GSM1202431", "GSM1202432", "GSM1202433", "GSM1202434", "GSM1202435", "GSM1202436", "GSM1202437", "GSM1202438" ], "type": "cell type", "id": "GDS5257_5" }, { "dataset_id": "GDS5257", "description": "mature calyx GBC", "sample_id": [ "GSM1202439", "GSM1202440", "GSM1202441", "GSM1202442", "GSM1202443" ], "type": "cell type", "id": "GDS5257_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5257", "version": 1.0, "instances": "20", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5257.tab", "compression": "gz" } ], [ [ "GDS5258.tab" ], { "title": "Chronic, low level drug exposure effect on obese liver", "description": "Analysis of liver from ob/ob obese males given water with 1 mg/L each of 11 drugs during 4 months. Contamination of drinking water with these drugs may have harmful effects on health. Results provide insight into mechanisms underlying obese liver responses to water-borne drug contamination.", "type": "Expression profiling by array", "pubmed_id": "24525044", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE49195", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5258", "description": "wild type lean", "sample_id": [ "GSM1195282", "GSM1195283", "GSM1195284", "GSM1195285", "GSM1195286", "GSM1195287", "GSM1195294", "GSM1195295", "GSM1195296", "GSM1195297", "GSM1195298", "GSM1195299" ], "type": "genotype/variation", "id": "GDS5258_1" }, { "dataset_id": "GDS5258", "description": "ob/ob obese", "sample_id": [ "GSM1195300", "GSM1195301", "GSM1195302", "GSM1195303", "GSM1195304", "GSM1195305", "GSM1195288", "GSM1195289", "GSM1195290", "GSM1195291", "GSM1195292", "GSM1195293" ], "type": "genotype/variation", "id": "GDS5258_2" }, { "dataset_id": "GDS5258", "description": "drug mixture", "sample_id": [ "GSM1195305", "GSM1195304", "GSM1195303", "GSM1195302", "GSM1195301", "GSM1195300", "GSM1195299", "GSM1195298", "GSM1195297", "GSM1195296", "GSM1195295", "GSM1195294" ], "type": "agent", "id": "GDS5258_3" }, { "dataset_id": "GDS5258", "description": "untreated", "sample_id": [ "GSM1195293", "GSM1195292", "GSM1195291", "GSM1195290", "GSM1195289", "GSM1195288", "GSM1195287", "GSM1195286", "GSM1195285", "GSM1195284", "GSM1195283", "GSM1195282" ], "type": "agent", "id": "GDS5258_4" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5258", "version": 1.0, "instances": "24", "variables": 27550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5258.tab", "compression": "gz" } ], [ [ "GDS5259.tab" ], { "title": "Neurospheres derived from adult and embryonic brain regions", "description": "Analysis of neurospheres derived from adult brain regions (neocortex, striatum, and subventricular zone) and dorsal and ventral forebrain neural tubes and spinal cord from E14.5 embryos. Results provide insight into molecular mechanisms underlying neurogenesis of the mammalian brain.", "type": "Expression profiling by array", "pubmed_id": "23974433", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE49194", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5259", "description": "embryonic day E14.5", "sample_id": [ "GSM1195279", "GSM1195280", "GSM1195281", "GSM1195277", "GSM1195278" ], "type": "development stage", "id": "GDS5259_1" }, { "dataset_id": "GDS5259", "description": "adult", "sample_id": [ "GSM1195274", "GSM1195275", "GSM1195276", "GSM1195271", "GSM1195272", "GSM1195273", "GSM1195268", "GSM1195269", "GSM1195270" ], "type": "development stage", "id": "GDS5259_2" }, { "dataset_id": "GDS5259", "description": "neocortex", "sample_id": [ "GSM1195268", "GSM1195269", "GSM1195270" ], "type": "tissue", "id": "GDS5259_3" }, { "dataset_id": "GDS5259", "description": "striatum", "sample_id": [ "GSM1195271", "GSM1195272", "GSM1195273" ], "type": "tissue", "id": "GDS5259_4" }, { "dataset_id": "GDS5259", "description": "subventricular zone", "sample_id": [ "GSM1195274", "GSM1195275", "GSM1195276" ], "type": "tissue", "id": "GDS5259_5" }, { "dataset_id": "GDS5259", "description": "dorsal forebrain", "sample_id": [ "GSM1195277", "GSM1195278" ], "type": "tissue", "id": "GDS5259_6" }, { "dataset_id": "GDS5259", "description": "ventral forebrain", "sample_id": [ "GSM1195279", "GSM1195280" ], "type": "tissue", "id": "GDS5259_7" }, { "dataset_id": "GDS5259", "description": "spinal cord", "sample_id": [ "GSM1195281" ], "type": "tissue", "id": "GDS5259_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5259", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5259.tab", "compression": "gz" } ], [ [ "GDS526.tab" ], { "title": "Syracuse high and low avoidance learning comparison", "description": "Comparison of hippocampus tissue from Syracuse High Avoidance (SHA) and Syracuse Low Avoidance (SLA) learning rats. Syracuse strains provide model for studying anxiety.", "type": "Expression profiling by array", "pubmed_id": "15720406", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE932", "order": "none", "update_date": "Mar 26 2004", "subsets": [ { "dataset_id": "GDS526", "description": "SHA", "sample_id": [ "GSM14519", "GSM14520", "GSM14523" ], "type": "strain", "id": "GDS526_1" }, { "dataset_id": "GDS526", "description": "SLA", "sample_id": [ "GSM14521", "GSM14522", "GSM14524" ], "type": "strain", "id": "GDS526_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS526", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS526.tab", "compression": "gz" } ], [ [ "GDS5260.tab" ], { "title": "Psoriasis: in vitro activated T cells", "description": "Analysis of in vitro activated T cells of psoriasis patients which were obtained by treating PBMCs with anti-CD3 and anti-CD28. Psoriasis is a T cell-mediated disease characterized by chronic inflammation of skin. Results provide insights into the molecular basis of T cell activation in psoriasis.", "type": "Expression profiling by array", "pubmed_id": "24267790", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE47598", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5260", "description": "psoriasis", "sample_id": [ "GSM1152981", "GSM1152980", "GSM1152979", "GSM1152978", "GSM1152977", "GSM1152976", "GSM1152975", "GSM1152974", "GSM1152993", "GSM1152991", "GSM1152989", "GSM1152987", "GSM1152985", "GSM1152984", "GSM1152983", "GSM1152982", "GSM1152973" ], "type": "disease state", "id": "GDS5260_1" }, { "dataset_id": "GDS5260", "description": "healthy control", "sample_id": [ "GSM1152996", "GSM1152995", "GSM1152994", "GSM1152992", "GSM1152990", "GSM1152988", "GSM1152986" ], "type": "disease state", "id": "GDS5260_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5260", "version": 1.0, "instances": "24", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5260.tab", "compression": "gz" } ], [ [ "GDS5261.tab" ], { "title": "Interleukin 4, interleukin 13 and tumor necrosis factor-\u03b1 effect on Matrigel-cultured IMR-90 lung fibroblast cells", "description": "Analysis of IMR-90 cells cultured on Matrigel and treated with IL-4, IL-13 or TNF\u03b1. Type 2 inflammatory processes mediated by IL-4 and IL-13 are implicated in pathologic lung fibrogenesis. Results provide insight into molecular mechanisms underlying the onset and maintenance of pulmonary fibrosis.", "type": "Expression profiling by array", "pubmed_id": "24879793", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE47542", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5261", "description": "interleukin 4", "sample_id": [ "GSM1151936", "GSM1151930", "GSM1151929" ], "type": "agent", "id": "GDS5261_1" }, { "dataset_id": "GDS5261", "description": "interleukin 13", "sample_id": [ "GSM1151937", "GSM1151932", "GSM1151931" ], "type": "agent", "id": "GDS5261_2" }, { "dataset_id": "GDS5261", "description": "tumor necrosis factor-\u03b1", "sample_id": [ "GSM1151938", "GSM1151934", "GSM1151933" ], "type": "agent", "id": "GDS5261_3" }, { "dataset_id": "GDS5261", "description": "unstimulated", "sample_id": [ "GSM1151935", "GSM1151928", "GSM1151951" ], "type": "agent", "id": "GDS5261_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5261", "version": 1.0, "instances": "12", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5261.tab", "compression": "gz" } ], [ [ "GDS5262.tab" ], { "title": "Interleukin 4, interleukin 13 and tumor necrosis factor-\u03b1 effect on plastic-cultured IMR-90 lung fibroblast cells", "description": "Analysis of IMR-90 cells cultured on plastic and treated with IL-4, IL-13 or TNF\u03b1. Type 2 inflammatory processes mediated by IL-4 and IL-13 are implicated in pathologic lung fibrogenesis. Results provide insight into molecular mechanisms underlying the onset and maintenance of pulmonary fibrosis.", "type": "Expression profiling by array", "pubmed_id": "24879793", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log2 ratio", "reference_series": "GSE47542", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5262", "description": "interleukin 4", "sample_id": [ "GSM1151941", "GSM1151942", "GSM1151948" ], "type": "agent", "id": "GDS5262_1" }, { "dataset_id": "GDS5262", "description": "interleukin 13", "sample_id": [ "GSM1151943", "GSM1151944", "GSM1151949" ], "type": "agent", "id": "GDS5262_2" }, { "dataset_id": "GDS5262", "description": "tumor necrosis factor-\u03b1", "sample_id": [ "GSM1151945", "GSM1151946", "GSM1151950" ], "type": "agent", "id": "GDS5262_3" }, { "dataset_id": "GDS5262", "description": "unstimulated", "sample_id": [ "GSM1151939", "GSM1151940", "GSM1151947" ], "type": "agent", "id": "GDS5262_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5262", "version": 1.0, "instances": "12", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5262.tab", "compression": "gz" } ], [ [ "GDS5263.tab" ], { "title": "Enforced Grainyhead-like 1 expression effect on BE(2)-C neuroblastoma cell line: time course", "description": "Analysis of BE(2)-C cells up to 72 hrs after transient transfection with construct pTRex-GRHL1. The three mammalian GRHL genes (GRHL1, -2, and -3) represent a highly conserved family of \u03b2-scaffold transcription factors. Results provide insight into the role of GRHL1 in neuroblastoma biology.", "type": "Expression profiling by array", "pubmed_id": "24419085", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE47407", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5263", "description": "hour 24", "sample_id": [ "GSM1149037", "GSM1149039", "GSM1149036", "GSM1149038" ], "type": "time", "id": "GDS5263_1" }, { "dataset_id": "GDS5263", "description": "hour 48", "sample_id": [ "GSM1149041", "GSM1149043", "GSM1149040", "GSM1149042" ], "type": "time", "id": "GDS5263_2" }, { "dataset_id": "GDS5263", "description": "hour 72", "sample_id": [ "GSM1149044", "GSM1149046", "GSM1149045", "GSM1149047" ], "type": "time", "id": "GDS5263_3" }, { "dataset_id": "GDS5263", "description": "pTRex-GRHL1", "sample_id": [ "GSM1149037", "GSM1149039", "GSM1149041", "GSM1149043", "GSM1149045", "GSM1149047" ], "type": "protocol", "id": "GDS5263_4" }, { "dataset_id": "GDS5263", "description": "empty vector", "sample_id": [ "GSM1149036", "GSM1149038", "GSM1149040", "GSM1149042", "GSM1149044", "GSM1149046" ], "type": "protocol", "id": "GDS5263_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5263", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5263.tab", "compression": "gz" } ], [ [ "GDS5264.tab" ], { "title": "High-fat diet effect on obesity-resistant NAG-1 transgenics: colon epithelium", "description": "Analysis of colon epithelium from NAG-1 (NSAID-activated gene-1) transgenics and wild-type C57BL/6J animals fed a high-fat diet for 20wk. The NAG-1 transgenics did not gain weight as their wild-type counterparts did. Results provide insight into the molecular impact of obesity on colonic epithelium.", "type": "Expression profiling by array", "pubmed_id": "24703701", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE46843", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5264", "description": "NAG-1 transgenic", "sample_id": [ "GSM1139089", "GSM1139090", "GSM1139091", "GSM1139083", "GSM1139084", "GSM1139085" ], "type": "genotype/variation", "id": "GDS5264_1" }, { "dataset_id": "GDS5264", "description": "wild type", "sample_id": [ "GSM1139086", "GSM1139087", "GSM1139088", "GSM1139081", "GSM1139082" ], "type": "genotype/variation", "id": "GDS5264_2" }, { "dataset_id": "GDS5264", "description": "high 60% fat diet", "sample_id": [ "GSM1139089", "GSM1139090", "GSM1139091", "GSM1139086", "GSM1139087", "GSM1139088" ], "type": "protocol", "id": "GDS5264_3" }, { "dataset_id": "GDS5264", "description": "low 10% fat diet", "sample_id": [ "GSM1139081", "GSM1139082", "GSM1139083", "GSM1139084", "GSM1139085" ], "type": "protocol", "id": "GDS5264_4" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5264", "version": 1.0, "instances": "11", "variables": 27550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5264.tab", "compression": "gz" } ], [ [ "GDS5265.tab" ], { "title": "Mycophenolic acid effect on AGS gastric cancers cells: time course", "description": "Analysis of AGS cells treated with mycophenolic acid (MPA; 2ug/ml) for up to 72hr. MPA is an immunosuppressive drug used to prevent graft rejection. Results provide insight into molecular mechanisms underlying the broad anticancer activities of MPA.", "type": "Expression profiling by array", "pubmed_id": "24260584", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46671", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5265", "description": "hour 0", "sample_id": [ "GSM1133722", "GSM1133723", "GSM1133724", "GSM1133725" ], "type": "time", "id": "GDS5265_1" }, { "dataset_id": "GDS5265", "description": "hour 12", "sample_id": [ "GSM1133726", "GSM1133727" ], "type": "time", "id": "GDS5265_2" }, { "dataset_id": "GDS5265", "description": "hour 24", "sample_id": [ "GSM1133728", "GSM1133729" ], "type": "time", "id": "GDS5265_3" }, { "dataset_id": "GDS5265", "description": "hour 48", "sample_id": [ "GSM1133730", "GSM1133731" ], "type": "time", "id": "GDS5265_4" }, { "dataset_id": "GDS5265", "description": "hour 72", "sample_id": [ "GSM1133732", "GSM1133733" ], "type": "time", "id": "GDS5265_5" }, { "dataset_id": "GDS5265", "description": "mycophenolic acid", "sample_id": [ "GSM1133726", "GSM1133727", "GSM1133728", "GSM1133729", "GSM1133730", "GSM1133731", "GSM1133732", "GSM1133733" ], "type": "agent", "id": "GDS5265_6" }, { "dataset_id": "GDS5265", "description": "untreated control", "sample_id": [ "GSM1133722", "GSM1133723", "GSM1133724", "GSM1133725" ], "type": "agent", "id": "GDS5265_7" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5265", "version": 1.0, "instances": "12", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5265.tab", "compression": "gz" } ], [ [ "GDS5266.tab" ], { "title": "Cyclin-dependent kinase inhibitor R547 effect on peripheral blood mononuclear cells: dose response and time course", "description": "Analysis of peripheral blood mononuclear cells treated with CDK inhibitor R547 at 2 doses for 2 and 24 hours. R547 exerts an antiproliferative effect on various cell lines. Results compared with those from DU145 (GDS5267) and HCT116 cells (GDS5268) to identify pharmacodynamic biomarkers for R547.", "type": "Expression profiling by array", "pubmed_id": "19755512", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE15389", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5266", "description": "untreated", "sample_id": [ "GSM386247", "GSM386248", "GSM386249" ], "type": "agent", "id": "GDS5266_1" }, { "dataset_id": "GDS5266", "description": "vehicle", "sample_id": [ "GSM386250", "GSM386251", "GSM386252", "GSM386253", "GSM386254", "GSM386255", "GSM386256", "GSM386257", "GSM386258", "GSM386259", "GSM386260", "GSM386261" ], "type": "agent", "id": "GDS5266_2" }, { "dataset_id": "GDS5266", "description": "R547", "sample_id": [ "GSM386225", "GSM386226", "GSM386227", "GSM386228", "GSM386229", "GSM386230", "GSM386231", "GSM386232", "GSM386233", "GSM386234", "GSM386235", "GSM386236", "GSM386237", "GSM386238", "GSM386239", "GSM386240", "GSM386241", "GSM386242", "GSM386243", "GSM386244", "GSM386245", "GSM386246" ], "type": "agent", "id": "GDS5266_3" }, { "dataset_id": "GDS5266", "description": "control", "sample_id": [ "GSM386247", "GSM386248", "GSM386249", "GSM386250", "GSM386251", "GSM386252", "GSM386253", "GSM386254", "GSM386255", "GSM386256", "GSM386257", "GSM386258", "GSM386259", "GSM386260", "GSM386261" ], "type": "dose", "id": "GDS5266_4" }, { "dataset_id": "GDS5266", "description": "IC90", "sample_id": [ "GSM386235", "GSM386236", "GSM386237", "GSM386238", "GSM386239", "GSM386240", "GSM386241", "GSM386242", "GSM386243", "GSM386244", "GSM386245", "GSM386246" ], "type": "dose", "id": "GDS5266_5" }, { "dataset_id": "GDS5266", "description": "3 x IC90", "sample_id": [ "GSM386225", "GSM386226", "GSM386227", "GSM386228", "GSM386229", "GSM386230", "GSM386231", "GSM386232", "GSM386233", "GSM386234" ], "type": "dose", "id": "GDS5266_6" }, { "dataset_id": "GDS5266", "description": "n/a", "sample_id": [ "GSM386247", "GSM386248", "GSM386249" ], "type": "time", "id": "GDS5266_7" }, { "dataset_id": "GDS5266", "description": "2 h", "sample_id": [ "GSM386230", "GSM386231", "GSM386232", "GSM386233", "GSM386234", "GSM386241", "GSM386242", "GSM386243", "GSM386244", "GSM386245", "GSM386246", "GSM386256", "GSM386257", "GSM386258", "GSM386259", "GSM386260", "GSM386261" ], "type": "time", "id": "GDS5266_8" }, { "dataset_id": "GDS5266", "description": "24 h", "sample_id": [ "GSM386225", "GSM386226", "GSM386227", "GSM386228", "GSM386229", "GSM386235", "GSM386236", "GSM386237", "GSM386238", "GSM386239", "GSM386240", "GSM386250", "GSM386251", "GSM386252", "GSM386253", "GSM386254", "GSM386255" ], "type": "time", "id": "GDS5266_9" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5266", "version": 1.0, "instances": "37", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5266.tab", "compression": "gz" } ], [ [ "GDS5267.tab" ], { "title": "Cyclin-dependent kinase inhibitor R547 effect on prostate cancer cell line: dose response and time course", "description": "Analysis of DU145 prostate cancer cells treated with the CDK inhibitor R547 at 3 doses for up to 24 hours. R547 exerts an antiproliferative effect on various cell lines. Results compared with those from PBMCs (GDS5266) and HCT116 cells (GDS5268) to identify pharmacodynamic biomarkers for R547.", "type": "Expression profiling by array", "pubmed_id": "19755512", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE15392", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5267", "description": "untreated", "sample_id": [ "GSM386317", "GSM386318", "GSM386319" ], "type": "agent", "id": "GDS5267_1" }, { "dataset_id": "GDS5267", "description": "vehicle", "sample_id": [ "GSM386320", "GSM386321", "GSM386322", "GSM386323", "GSM386324", "GSM386325", "GSM386326", "GSM386327", "GSM386328", "GSM386329", "GSM386330", "GSM386331" ], "type": "agent", "id": "GDS5267_2" }, { "dataset_id": "GDS5267", "description": "R547", "sample_id": [ "GSM386288", "GSM386289", "GSM386290", "GSM386291", "GSM386292", "GSM386293", "GSM386294", "GSM386295", "GSM386296", "GSM386297", "GSM386298", "GSM386299", "GSM386300", "GSM386301", "GSM386302", "GSM386303", "GSM386304", "GSM386305", "GSM386306", "GSM386307", "GSM386308", "GSM386309", "GSM386310", "GSM386311", "GSM386312", "GSM386313", "GSM386314", "GSM386315", "GSM386316", "GSM386332" ], "type": "agent", "id": "GDS5267_3" }, { "dataset_id": "GDS5267", "description": "control", "sample_id": [ "GSM386317", "GSM386318", "GSM386319", "GSM386320", "GSM386321", "GSM386322", "GSM386323", "GSM386324", "GSM386325", "GSM386326", "GSM386327", "GSM386328", "GSM386329", "GSM386330", "GSM386331" ], "type": "dose", "id": "GDS5267_4" }, { "dataset_id": "GDS5267", "description": "IC50", "sample_id": [ "GSM386296", "GSM386297", "GSM386298", "GSM386299", "GSM386300", "GSM386301", "GSM386302", "GSM386303", "GSM386304", "GSM386305" ], "type": "dose", "id": "GDS5267_5" }, { "dataset_id": "GDS5267", "description": "IC90", "sample_id": [ "GSM386306", "GSM386307", "GSM386308", "GSM386309", "GSM386310", "GSM386311", "GSM386312", "GSM386313", "GSM386314", "GSM386315", "GSM386316" ], "type": "dose", "id": "GDS5267_6" }, { "dataset_id": "GDS5267", "description": "3 x IC90", "sample_id": [ "GSM386288", "GSM386289", "GSM386290", "GSM386291", "GSM386292", "GSM386293", "GSM386294", "GSM386295", "GSM386332" ], "type": "dose", "id": "GDS5267_7" }, { "dataset_id": "GDS5267", "description": "n/a", "sample_id": [ "GSM386317", "GSM386318", "GSM386319" ], "type": "time", "id": "GDS5267_8" }, { "dataset_id": "GDS5267", "description": "2 h", "sample_id": [ "GSM386290", "GSM386291", "GSM386292", "GSM386300", "GSM386301", "GSM386302", "GSM386303", "GSM386309", "GSM386310", "GSM386311", "GSM386312", "GSM386324", "GSM386325", "GSM386326", "GSM386327" ], "type": "time", "id": "GDS5267_9" }, { "dataset_id": "GDS5267", "description": "6 h", "sample_id": [ "GSM386293", "GSM386294", "GSM386295", "GSM386304", "GSM386305", "GSM386313", "GSM386314", "GSM386315", "GSM386316", "GSM386328", "GSM386329", "GSM386330", "GSM386331", "GSM386332" ], "type": "time", "id": "GDS5267_10" }, { "dataset_id": "GDS5267", "description": "24 h", "sample_id": [ "GSM386288", "GSM386289", "GSM386296", "GSM386297", "GSM386298", "GSM386299", "GSM386306", "GSM386307", "GSM386308", "GSM386320", "GSM386321", "GSM386322", "GSM386323" ], "type": "time", "id": "GDS5267_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5267", "version": 1.0, "instances": "45", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5267.tab", "compression": "gz" } ], [ [ "GDS5268.tab" ], { "title": "Cyclin-dependent kinase inhibitor R547 effect on colon cancer cell line: dose response and time course", "description": "Analysis of HCT116 colon cancer cells treated with the CDK inhibitor R547 at 3 doses for up to 24 hours. R547 exerts an antiproliferative effect on various cell lines. Results compared with those from PBMCs (GDS5266) and DU145 cells (GDS5267) to identify pharmacodynamic biomarkers for R547.", "type": "Expression profiling by array", "pubmed_id": "19755512", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "74", "value_type": "count", "reference_series": "GSE15395", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5268", "description": "untreated", "sample_id": [ "GSM386435", "GSM386436", "GSM386437", "GSM386438" ], "type": "agent", "id": "GDS5268_1" }, { "dataset_id": "GDS5268", "description": "vehicle", "sample_id": [ "GSM386439", "GSM386440", "GSM386441", "GSM386442", "GSM386443", "GSM386444", "GSM386445", "GSM386446", "GSM386447", "GSM386448", "GSM386449", "GSM386450", "GSM386451", "GSM386452", "GSM386453", "GSM386454", "GSM386455", "GSM386456", "GSM386457", "GSM386458" ], "type": "agent", "id": "GDS5268_2" }, { "dataset_id": "GDS5268", "description": "R547", "sample_id": [ "GSM386385", "GSM386386", "GSM386387", "GSM386388", "GSM386389", "GSM386390", "GSM386391", "GSM386392", "GSM386393", "GSM386394", "GSM386395", "GSM386396", "GSM386397", "GSM386398", "GSM386399", "GSM386400", "GSM386401", "GSM386402", "GSM386403", "GSM386404", "GSM386405", "GSM386406", "GSM386407", "GSM386408", "GSM386409", "GSM386410", "GSM386411", "GSM386412", "GSM386413", "GSM386414", "GSM386415", "GSM386416", "GSM386417", "GSM386418", "GSM386419", "GSM386420", "GSM386421", "GSM386422", "GSM386423", "GSM386424", "GSM386425", "GSM386426", "GSM386427", "GSM386428", "GSM386429", "GSM386430", "GSM386431", "GSM386432", "GSM386433", "GSM386434" ], "type": "agent", "id": "GDS5268_3" }, { "dataset_id": "GDS5268", "description": "control", "sample_id": [ "GSM386435", "GSM386436", "GSM386437", "GSM386438", "GSM386439", "GSM386440", "GSM386441", "GSM386442", "GSM386443", "GSM386444", "GSM386445", "GSM386446", "GSM386447", "GSM386448", "GSM386449", "GSM386450", "GSM386451", "GSM386452", "GSM386453", "GSM386454", "GSM386455", "GSM386456", "GSM386457", "GSM386458" ], "type": "dose", "id": "GDS5268_4" }, { "dataset_id": "GDS5268", "description": "IC50", "sample_id": [ "GSM386398", "GSM386399", "GSM386400", "GSM386401", "GSM386402", "GSM386403", "GSM386404", "GSM386405", "GSM386406", "GSM386407", "GSM386408", "GSM386409", "GSM386410", "GSM386411", "GSM386412", "GSM386413", "GSM386414", "GSM386415", "GSM386416", "GSM386417" ], "type": "dose", "id": "GDS5268_5" }, { "dataset_id": "GDS5268", "description": "IC90", "sample_id": [ "GSM386418", "GSM386419", "GSM386420", "GSM386421", "GSM386422", "GSM386423", "GSM386424", "GSM386425", "GSM386426", "GSM386427", "GSM386428", "GSM386429", "GSM386430", "GSM386431", "GSM386432", "GSM386433", "GSM386434" ], "type": "dose", "id": "GDS5268_6" }, { "dataset_id": "GDS5268", "description": "3 x IC90", "sample_id": [ "GSM386385", "GSM386386", "GSM386387", "GSM386388", "GSM386389", "GSM386390", "GSM386391", "GSM386392", "GSM386393", "GSM386394", "GSM386395", "GSM386396", "GSM386397" ], "type": "dose", "id": "GDS5268_7" }, { "dataset_id": "GDS5268", "description": "n/a", "sample_id": [ "GSM386435", "GSM386436", "GSM386437", "GSM386438" ], "type": "time", "id": "GDS5268_8" }, { "dataset_id": "GDS5268", "description": "1 h", "sample_id": [ "GSM386385", "GSM386386", "GSM386387", "GSM386398", "GSM386399", "GSM386400", "GSM386401", "GSM386418", "GSM386419", "GSM386420", "GSM386421", "GSM386440", "GSM386441", "GSM386442", "GSM386439" ], "type": "time", "id": "GDS5268_9" }, { "dataset_id": "GDS5268", "description": "2 h", "sample_id": [ "GSM386391", "GSM386392", "GSM386406", "GSM386407", "GSM386408", "GSM386409", "GSM386426", "GSM386427", "GSM386428", "GSM386447", "GSM386448", "GSM386449", "GSM386450" ], "type": "time", "id": "GDS5268_10" }, { "dataset_id": "GDS5268", "description": "4 h", "sample_id": [ "GSM386393", "GSM386394", "GSM386395", "GSM386410", "GSM386411", "GSM386412", "GSM386413", "GSM386429", "GSM386430", "GSM386431", "GSM386432", "GSM386451", "GSM386452", "GSM386453", "GSM386454" ], "type": "time", "id": "GDS5268_11" }, { "dataset_id": "GDS5268", "description": "6 h", "sample_id": [ "GSM386396", "GSM386397", "GSM386414", "GSM386415", "GSM386416", "GSM386417", "GSM386433", "GSM386434", "GSM386455", "GSM386456", "GSM386457", "GSM386458" ], "type": "time", "id": "GDS5268_12" }, { "dataset_id": "GDS5268", "description": "24 h", "sample_id": [ "GSM386388", "GSM386389", "GSM386390", "GSM386402", "GSM386403", "GSM386404", "GSM386405", "GSM386422", "GSM386423", "GSM386424", "GSM386425", "GSM386443", "GSM386444", "GSM386445", "GSM386446" ], "type": "time", "id": "GDS5268_13" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5268", "version": 1.0, "instances": "74", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5268.tab", "compression": "gz" } ], [ [ "GDS5269.tab" ], { "title": "Hydrogen peroxide-inducible clone-5 deficiency effect on dexamethasone-treated osteosarcoma cells: time course", "description": "Analysis of U2OS-GR osteosarcoma cells (which stably express glucocorticoid receptor \u03b1) depleted for hydrogen peroxide-inducible clone-5 (Hic-5) then treated with the GR ligand dexamethasone for up to 24hrs. Results provide insight into the role of LIM domain coregulator Hic-5 in GR signaling.", "type": "Expression profiling by array", "pubmed_id": "24591583", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE46448", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5269", "description": "not transfected", "sample_id": [ "GSM1130394", "GSM1130339", "GSM1130376", "GSM1130345", "GSM1130343", "GSM1130389", "GSM1130383", "GSM1130364", "GSM1130385", "GSM1130371", "GSM1130400", "GSM1130350", "GSM1130361", "GSM1130355", "GSM1130358", "GSM1130397" ], "type": "protocol", "id": "GDS5269_1" }, { "dataset_id": "GDS5269", "description": "siHic5_2 transfected", "sample_id": [ "GSM1130351", "GSM1130373", "GSM1130391", "GSM1130382", "GSM1130340", "GSM1130386", "GSM1130367", "GSM1130354", "GSM1130363", "GSM1130344", "GSM1130395", "GSM1130377", "GSM1130369", "GSM1130359", "GSM1130341", "GSM1130392" ], "type": "protocol", "id": "GDS5269_2" }, { "dataset_id": "GDS5269", "description": "nonspecific siRNA transfected", "sample_id": [ "GSM1130370", "GSM1130357", "GSM1130362", "GSM1130368", "GSM1130387", "GSM1130352", "GSM1130380", "GSM1130384", "GSM1130348", "GSM1130346", "GSM1130374", "GSM1130393", "GSM1130360", "GSM1130398", "GSM1130379", "GSM1130342" ], "type": "protocol", "id": "GDS5269_3" }, { "dataset_id": "GDS5269", "description": "control", "sample_id": [ "GSM1130397", "GSM1130361", "GSM1130358", "GSM1130355", "GSM1130392", "GSM1130369", "GSM1130359", "GSM1130341", "GSM1130398", "GSM1130379", "GSM1130360", "GSM1130342" ], "type": "agent", "id": "GDS5269_4" }, { "dataset_id": "GDS5269", "description": "dexamethasone", "sample_id": [ "GSM1130389", "GSM1130383", "GSM1130364", "GSM1130343", "GSM1130386", "GSM1130367", "GSM1130354", "GSM1130340", "GSM1130387", "GSM1130384", "GSM1130380", "GSM1130352", "GSM1130394", "GSM1130376", "GSM1130345", "GSM1130339", "GSM1130391", "GSM1130382", "GSM1130373", "GSM1130351", "GSM1130370", "GSM1130368", "GSM1130362", "GSM1130357", "GSM1130400", "GSM1130385", "GSM1130371", "GSM1130350", "GSM1130395", "GSM1130377", "GSM1130363", "GSM1130344", "GSM1130393", "GSM1130374", "GSM1130348", "GSM1130346" ], "type": "agent", "id": "GDS5269_5" }, { "dataset_id": "GDS5269", "description": "0 hour", "sample_id": [ "GSM1130397", "GSM1130361", "GSM1130358", "GSM1130355", "GSM1130392", "GSM1130369", "GSM1130359", "GSM1130341", "GSM1130398", "GSM1130379", "GSM1130360", "GSM1130342" ], "type": "time", "id": "GDS5269_6" }, { "dataset_id": "GDS5269", "description": "2 hours", "sample_id": [ "GSM1130389", "GSM1130383", "GSM1130364", "GSM1130343", "GSM1130386", "GSM1130367", "GSM1130354", "GSM1130340", "GSM1130387", "GSM1130384", "GSM1130380", "GSM1130352" ], "type": "time", "id": "GDS5269_7" }, { "dataset_id": "GDS5269", "description": "4 hours", "sample_id": [ "GSM1130394", "GSM1130376", "GSM1130345", "GSM1130339", "GSM1130391", "GSM1130382", "GSM1130373", "GSM1130351", "GSM1130370", "GSM1130368", "GSM1130362", "GSM1130357" ], "type": "time", "id": "GDS5269_8" }, { "dataset_id": "GDS5269", "description": "24 hours", "sample_id": [ "GSM1130400", "GSM1130385", "GSM1130371", "GSM1130350", "GSM1130395", "GSM1130377", "GSM1130363", "GSM1130344", "GSM1130393", "GSM1130374", "GSM1130348", "GSM1130346" ], "type": "time", "id": "GDS5269_9" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5269", "version": 1.0, "instances": "48", "variables": 37610, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5269.tab", "compression": "gz" } ], [ [ "GDS527.tab" ], { "title": "Colorectal tumor cell response to X radiation (19K 3 Part A)", "description": "Evaluation of colorectal tumor cell line (HCT116) response to X radiation (XR). XR sensitive HCT116-CloneK cells treated at 4 Gy for 10 minutes, 6 hours, and 24 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL350", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE522", "order": "ordered", "update_date": "Aug 03 2004", "subsets": [ { "dataset_id": "GDS527", "description": "10 min", "sample_id": [ "GSM7801", "GSM7802", "GSM7803" ], "type": "time", "id": "GDS527_1" }, { "dataset_id": "GDS527", "description": "6 h", "sample_id": [ "GSM7807", "GSM7808", "GSM7809" ], "type": "time", "id": "GDS527_2" }, { "dataset_id": "GDS527", "description": "24 h", "sample_id": [ "GSM7813", "GSM7814", "GSM7815" ], "type": "time", "id": "GDS527_3" } ], "taxid": "9606", "genes": 11548, "aggregation_function": "mean", "name": "GDS527", "version": 1.0, "instances": "9", "variables": 11550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS527.tab", "compression": "gz" } ], [ [ "GDS5270.tab" ], { "title": "Infarct volume-variant inbred strains at two developmental stages: cerebral cortex", "description": "Analysis of cerebral cortex from C57BL/6J and C3H/J strains at post-natal day 1 and week 11. These strains share similar collateral vessel anatomy but exhibit significantly different infarct volume. Results provide insight into molecular mechanisms modulating infarct volume.", "type": "Expression profiling by array", "pubmed_id": "23800850", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46443", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5270", "description": "post-natal day 1", "sample_id": [ "GSM1130181", "GSM1130182", "GSM1130183", "GSM1130184", "GSM1130185", "GSM1130186" ], "type": "age", "id": "GDS5270_1" }, { "dataset_id": "GDS5270", "description": "post-natal week 11", "sample_id": [ "GSM1130187", "GSM1130188", "GSM1130189", "GSM1130190", "GSM1130191", "GSM1130192" ], "type": "age", "id": "GDS5270_2" }, { "dataset_id": "GDS5270", "description": "C57BL/6J", "sample_id": [ "GSM1130181", "GSM1130182", "GSM1130183", "GSM1130187", "GSM1130188", "GSM1130189" ], "type": "strain", "id": "GDS5270_3" }, { "dataset_id": "GDS5270", "description": "C3H/J", "sample_id": [ "GSM1130184", "GSM1130185", "GSM1130186", "GSM1130190", "GSM1130191", "GSM1130192" ], "type": "strain", "id": "GDS5270_4" }, { "dataset_id": "GDS5270", "description": "infarct volume: smaller", "sample_id": [ "GSM1130181", "GSM1130182", "GSM1130183", "GSM1130187", "GSM1130188", "GSM1130189" ], "type": "other", "id": "GDS5270_5" }, { "dataset_id": "GDS5270", "description": "infarct volume: larger", "sample_id": [ "GSM1130184", "GSM1130185", "GSM1130186", "GSM1130190", "GSM1130191", "GSM1130192" ], "type": "other", "id": "GDS5270_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5270", "version": 1.0, "instances": "12", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5270.tab", "compression": "gz" } ], [ [ "GDS5271.tab" ], { "title": "Lipopolysaccharide effect on transmembrane protease, serine 6 deficient liver", "description": "Analysis of liver from Tmprss6 knockouts (KO) and iron-deficient WT littermates treated with LPS to induce acute inflammation. Tmprss6 KOs are iron-deficient with high levels of hepcidin, a key iron regulator. Results provide insight into molecular basis of the Tmprss6 KO inflammatory response.", "type": "Expression profiling by array", "pubmed_id": "23922777", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE46287", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5271", "description": "wild type", "sample_id": [ "GSM1128154", "GSM1128155", "GSM1128156", "GSM1128157", "GSM1128158", "GSM1128159" ], "type": "genotype/variation", "id": "GDS5271_1" }, { "dataset_id": "GDS5271", "description": "Tmprss6 knockout", "sample_id": [ "GSM1128160", "GSM1128161", "GSM1128162", "GSM1128163", "GSM1128164", "GSM1128165" ], "type": "genotype/variation", "id": "GDS5271_2" }, { "dataset_id": "GDS5271", "description": "iron replete diet", "sample_id": [ "GSM1128160", "GSM1128161", "GSM1128162", "GSM1128163", "GSM1128164", "GSM1128165" ], "type": "growth protocol", "id": "GDS5271_3" }, { "dataset_id": "GDS5271", "description": "iron deficient diet", "sample_id": [ "GSM1128154", "GSM1128155", "GSM1128156", "GSM1128157", "GSM1128158", "GSM1128159" ], "type": "growth protocol", "id": "GDS5271_4" }, { "dataset_id": "GDS5271", "description": "lipopolysaccharide injection", "sample_id": [ "GSM1128163", "GSM1128164", "GSM1128165", "GSM1128157", "GSM1128158", "GSM1128159" ], "type": "stress", "id": "GDS5271_5" }, { "dataset_id": "GDS5271", "description": "saline injected", "sample_id": [ "GSM1128154", "GSM1128155", "GSM1128156", "GSM1128160", "GSM1128161", "GSM1128162" ], "type": "stress", "id": "GDS5271_6" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5271", "version": 1.0, "instances": "12", "variables": 28108, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5271.tab", "compression": "gz" } ], [ [ "GDS5272.tab" ], { "title": "Alopecia areata: scalp skin", "description": "Analysis of scalp skin from patients with alopecia areata (AA). AA is a common autoimmune disease resulting from damage of the hair follicle by T cells. Results provide insight into the molecular mechanisms underlying AA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "25129481", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE45512", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5272", "description": "alopecia areata", "sample_id": [ "GSM1105869", "GSM1105870", "GSM1105871", "GSM1105872", "GSM1105873" ], "type": "disease state", "id": "GDS5272_1" }, { "dataset_id": "GDS5272", "description": "healthy control", "sample_id": [ "GSM1105874", "GSM1105875", "GSM1105876", "GSM1105877", "GSM1105878" ], "type": "disease state", "id": "GDS5272_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5272", "version": 1.0, "instances": "10", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5272.tab", "compression": "gz" } ], [ [ "GDS5273.tab" ], { "title": "Topical protein tyrosine kinase inhibitor effect on graft model of alopecia areata: time course", "description": "Analysis of skin from C3H/HeJ grafted recipients with established alopecia areata (AA) following alopecic graft transplantation that were treated with topical Janus kinase (JAK) inhibitor ruxolitinib or tofacitinib for up to 24 wks. Results provide insight into molecular basis of AA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "25129481", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "transformed count", "reference_series": "GSE45514", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5273", "description": "week 0", "sample_id": [ "GSM1105885", "GSM1105886", "GSM1105887", "GSM1105896", "GSM1105897", "GSM1105898", "GSM1105907", "GSM1105908", "GSM1105909" ], "type": "time", "id": "GDS5273_1" }, { "dataset_id": "GDS5273", "description": "week 6", "sample_id": [ "GSM1105888", "GSM1105889", "GSM1105890", "GSM1105899", "GSM1105900", "GSM1105901", "GSM1105910", "GSM1105911", "GSM1105912" ], "type": "time", "id": "GDS5273_2" }, { "dataset_id": "GDS5273", "description": "week 12", "sample_id": [ "GSM1105891", "GSM1105892", "GSM1105893", "GSM1105902", "GSM1105903", "GSM1105904", "GSM1105913", "GSM1105914", "GSM1105915" ], "type": "time", "id": "GDS5273_3" }, { "dataset_id": "GDS5273", "description": "week 24", "sample_id": [ "GSM1105894", "GSM1105895", "GSM1105905", "GSM1105906" ], "type": "time", "id": "GDS5273_4" }, { "dataset_id": "GDS5273", "description": "ruxolitinib", "sample_id": [ "GSM1105885", "GSM1105886", "GSM1105887", "GSM1105891", "GSM1105892", "GSM1105893", "GSM1105894", "GSM1105895", "GSM1105888", "GSM1105889", "GSM1105890" ], "type": "agent", "id": "GDS5273_5" }, { "dataset_id": "GDS5273", "description": "tofacitinib", "sample_id": [ "GSM1105896", "GSM1105897", "GSM1105898", "GSM1105902", "GSM1105903", "GSM1105904", "GSM1105905", "GSM1105906", "GSM1105899", "GSM1105900", "GSM1105901" ], "type": "agent", "id": "GDS5273_6" }, { "dataset_id": "GDS5273", "description": "control", "sample_id": [ "GSM1105907", "GSM1105908", "GSM1105909", "GSM1105913", "GSM1105914", "GSM1105915", "GSM1105910", "GSM1105911", "GSM1105912" ], "type": "agent", "id": "GDS5273_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5273", "version": 1.0, "instances": "31", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5273.tab", "compression": "gz" } ], [ [ "GDS5274.tab" ], { "title": "Alopecia areata model: skin", "description": "Analysis of alopecic skin from C3H/HeJ animals. The C3H/HeJ strain develops spontaneous alopecia areata (AA) with high similarity to human AA. AA is an autoimmune disease resulting from damage of hair follicle by T cells. Results provide insight into molecular mechanisms underlying AA pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "25129481", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE45513", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5274", "description": "alopecia areata", "sample_id": [ "GSM1105879", "GSM1105880", "GSM1105881" ], "type": "disease state", "id": "GDS5274_1" }, { "dataset_id": "GDS5274", "description": "unaffected", "sample_id": [ "GSM1105882", "GSM1105883", "GSM1105884" ], "type": "disease state", "id": "GDS5274_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5274", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5274.tab", "compression": "gz" } ], [ [ "GDS5275.tab" ], { "title": "Oral ruxolinitib effect on alopecia areata patients: scalp skin", "description": "Analysis of scalp skin from two alopecia areata (AA) patients treated with oral ruxolitinib for 12 weeks. AA is a T-cell mediated autoimmune disease. Ruxolitinib is a small-molecule inhibitor of the JAK1/2 kinases. Results provide insight into molecular mechanisms underlying the pathogenesis of AA.", "type": "Expression profiling by array", "pubmed_id": "25129481", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE58573", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5275", "description": "patient 1", "sample_id": [ "GSM1414312", "GSM1414313" ], "type": "individual", "id": "GDS5275_1" }, { "dataset_id": "GDS5275", "description": "patient 2", "sample_id": [ "GSM1414314", "GSM1414315" ], "type": "individual", "id": "GDS5275_2" }, { "dataset_id": "GDS5275", "description": "control subject 1", "sample_id": [ "GSM1414316" ], "type": "individual", "id": "GDS5275_3" }, { "dataset_id": "GDS5275", "description": "control subject 2", "sample_id": [ "GSM1414317" ], "type": "individual", "id": "GDS5275_4" }, { "dataset_id": "GDS5275", "description": "control subject 3", "sample_id": [ "GSM1414318" ], "type": "individual", "id": "GDS5275_5" }, { "dataset_id": "GDS5275", "description": "normal", "sample_id": [ "GSM1414316", "GSM1414317", "GSM1414318" ], "type": "disease state", "id": "GDS5275_6" }, { "dataset_id": "GDS5275", "description": "alopecia areata", "sample_id": [ "GSM1414312", "GSM1414313", "GSM1414314", "GSM1414315" ], "type": "disease state", "id": "GDS5275_7" }, { "dataset_id": "GDS5275", "description": "untreated", "sample_id": [ "GSM1414312", "GSM1414314", "GSM1414316", "GSM1414317", "GSM1414318" ], "type": "agent", "id": "GDS5275_8" }, { "dataset_id": "GDS5275", "description": "ruxolinitib", "sample_id": [ "GSM1414313", "GSM1414315" ], "type": "agent", "id": "GDS5275_9" }, { "dataset_id": "GDS5275", "description": "week 0", "sample_id": [ "GSM1414316", "GSM1414317", "GSM1414318", "GSM1414312", "GSM1414314" ], "type": "time", "id": "GDS5275_10" }, { "dataset_id": "GDS5275", "description": "week 12", "sample_id": [ "GSM1414313", "GSM1414315" ], "type": "time", "id": "GDS5275_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5275", "version": 1.0, "instances": "7", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5275.tab", "compression": "gz" } ], [ [ "GDS5276.tab" ], { "title": "Myotonic dystrophy type 2: vastus lateralis biopsies", "description": "Analysis of vastus lateralis biopsies from myotonic dystrophy type 2 (DM2) patients. DM2 is a multisystemic disorder caused by a (CCTG)n repeat expansion in intron 1 of cellular nucleic acid-binding protein. Results provide insight into molecular mechanisms underlying DM2 pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24907641", "platform": "GPL6102", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48702", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE45331", "order": "none", "update_date": "Sep 30 2014", "subsets": [ { "dataset_id": "GDS5276", "description": "Myotonic dystrophy type 2", "sample_id": [ "GSM1102614", "GSM1102615", "GSM1102616", "GSM1102617", "GSM1102618", "GSM1102619" ], "type": "disease state", "id": "GDS5276_1" }, { "dataset_id": "GDS5276", "description": "control", "sample_id": [ "GSM1102620", "GSM1102621", "GSM1102622", "GSM1102623" ], "type": "disease state", "id": "GDS5276_2" } ], "taxid": "9606", "genes": 43616, "aggregation_function": "mean", "name": "GDS5276", "version": 1.0, "instances": "10", "variables": 43618, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5276.tab", "compression": "gz" } ], [ [ "GDS5277.tab" ], { "title": "Rheumatoid arthritis and response to anti-TNF therapy: blood", "description": "Analysis of blood from rheumatoid arthritis (RA) patients prior to anti-TNF therapy. Response of patients to anti-TNF therapy assessed after 14 weeks. Results identify a gene expression signature for predicting the response to anti-TNF therapy.", "type": "Expression profiling by array", "pubmed_id": "19699293", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "86", "value_type": "transformed count", "reference_series": "GSE15258", "order": "none", "update_date": "Oct 01 2014", "subsets": [ { "dataset_id": "GDS5277", "description": "responder", "sample_id": [ "GSM381194", "GSM381199", "GSM381205", "GSM381211", "GSM381220", "GSM381222", "GSM381224", "GSM381232", "GSM381240", "GSM381250", "GSM381252", "GSM381254", "GSM381256", "GSM381257", "GSM381259", "GSM381260", "GSM381261", "GSM381263", "GSM381265", "GSM381268", "GSM381270", "GSM381271", "GSM381275", "GSM381279" ], "type": "other", "id": "GDS5277_1" }, { "dataset_id": "GDS5277", "description": "non-responder", "sample_id": [ "GSM381195", "GSM381196", "GSM381198", "GSM381200", "GSM381201", "GSM381203", "GSM381204", "GSM381209", "GSM381212", "GSM381213", "GSM381214", "GSM381216", "GSM381225", "GSM381231", "GSM381235", "GSM381237", "GSM381241", "GSM381243", "GSM381245", "GSM381246", "GSM381251", "GSM381264" ], "type": "other", "id": "GDS5277_2" }, { "dataset_id": "GDS5277", "description": "unknown", "sample_id": [ "GSM381206", "GSM381217", "GSM381218", "GSM381226", "GSM381227", "GSM381228", "GSM381236", "GSM381244", "GSM381272", "GSM381277", "GSM381278" ], "type": "other", "id": "GDS5277_3" }, { "dataset_id": "GDS5277", "description": "moderate responder", "sample_id": [ "GSM381197", "GSM381202", "GSM381207", "GSM381208", "GSM381210", "GSM381215", "GSM381219", "GSM381221", "GSM381223", "GSM381229", "GSM381230", "GSM381233", "GSM381234", "GSM381238", "GSM381239", "GSM381242", "GSM381247", "GSM381248", "GSM381249", "GSM381253", "GSM381255", "GSM381258", "GSM381262", "GSM381266", "GSM381267", "GSM381269", "GSM381273", "GSM381274", "GSM381276" ], "type": "other", "id": "GDS5277_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5277", "version": 1.0, "instances": "86", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5277.tab", "compression": "gz" } ], [ [ "GDS5279.tab" ], { "title": "Pristimerin effect on myeloma cell lines", "description": "Analysis of H929 and U266 myeloma cells treated with the natural triterpenoid pristimerin. Multiple myeloma tumors exhibit dysregulated cyclin D expression. Pristimerin identified from a chemical library screen for compounds that induce suppression of transcription from the cyclin D2 promoter.", "type": "Expression profiling by array", "pubmed_id": "19096011", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE14011", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5279", "description": "H929", "sample_id": [ "GSM351746", "GSM351747" ], "type": "cell line", "id": "GDS5279_1" }, { "dataset_id": "GDS5279", "description": "U266", "sample_id": [ "GSM351748", "GSM351749" ], "type": "cell line", "id": "GDS5279_2" }, { "dataset_id": "GDS5279", "description": "DMSO", "sample_id": [ "GSM351746", "GSM351748" ], "type": "agent", "id": "GDS5279_3" }, { "dataset_id": "GDS5279", "description": "pristimerin", "sample_id": [ "GSM351747", "GSM351749" ], "type": "agent", "id": "GDS5279_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5279", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5279.tab", "compression": "gz" } ], [ [ "GDS528.tab" ], { "title": "Colorectal tumor cell response to X radiation (19K 3 Part B)", "description": "Evaluation of colorectal tumor cell line (HCT116) response to X radiation (XR). XR sensitive HCT116-CloneK cells treated at 4 Gy for 10 minutes, 6 hours, and 24 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL351", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE522", "order": "ordered", "update_date": "Aug 03 2004", "subsets": [ { "dataset_id": "GDS528", "description": "10 min", "sample_id": [ "GSM7804", "GSM7805", "GSM7806" ], "type": "time", "id": "GDS528_1" }, { "dataset_id": "GDS528", "description": "6 h", "sample_id": [ "GSM7810", "GSM7811", "GSM7812" ], "type": "time", "id": "GDS528_2" }, { "dataset_id": "GDS528", "description": "24 h", "sample_id": [ "GSM7816", "GSM7817", "GSM7818" ], "type": "time", "id": "GDS528_3" } ], "taxid": "9606", "genes": 11596, "aggregation_function": "mean", "name": "GDS528", "version": 1.0, "instances": "9", "variables": 11598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS528.tab", "compression": "gz" } ], [ [ "GDS5280.tab" ], { "title": "Serum response factor deficiency effect on the liver", "description": "Analysis of serum response factor (SRF) deficient livers from 3 week old animals. SRF is a transcription factor that binds to a CarG box motif. SRF gene disruption confined to hepatocytes. Results provide insight into the function of SRF in the liver.", "type": "Expression profiling by array", "pubmed_id": "19205030", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE13333", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5280", "description": "control", "sample_id": [ "GSM335971", "GSM336405", "GSM336406" ], "type": "genotype/variation", "id": "GDS5280_1" }, { "dataset_id": "GDS5280", "description": "SRF null", "sample_id": [ "GSM336407", "GSM336408", "GSM336409" ], "type": "genotype/variation", "id": "GDS5280_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5280", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5280.tab", "compression": "gz" } ], [ [ "GDS5281.tab" ], { "title": "Lysine-specific demethylase 1 depletion effect on neuroblastoma cell line", "description": "Analysis of SH-SY5Y neuroblastoma cells depleted for lysine-specific demethylase 1 (LSD1). LSD1 is a histone demethylating enzyme. Results provide insight into the role of LSD1 in neuroblastoma.", "type": "Expression profiling by array", "pubmed_id": "19223552", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE13273", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5281", "description": "LSD1 depletion", "sample_id": [ "GSM335163", "GSM335164" ], "type": "protocol", "id": "GDS5281_1" }, { "dataset_id": "GDS5281", "description": "control", "sample_id": [ "GSM335161", "GSM335162" ], "type": "protocol", "id": "GDS5281_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5281", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5281.tab", "compression": "gz" } ], [ [ "GDS5282.tab" ], { "title": "Hexahydro-1,3,5-trinitro-1,3,5-triazine effect on the brain: dose response and time course", "description": "Analysis of cerebral cortices of males for up to 48 hours after treatment with an oral, nonseizure-inducing dose of 3 or 18 mg/kg hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). RDX is a synthetic, high-impact, stable explosive. Results provide insight into the acute effects of RDX on the brain.", "type": "Expression profiling by array", "pubmed_id": "19239275", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE12196", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5282", "description": "3 mg/kg RDX", "sample_id": [ "GSM306951", "GSM306953", "GSM306955", "GSM306957", "GSM306959", "GSM306961", "GSM306963", "GSM306965", "GSM306967", "GSM306969", "GSM306971", "GSM306973" ], "type": "dose", "id": "GDS5282_1" }, { "dataset_id": "GDS5282", "description": "18 mg/kg RDX", "sample_id": [ "GSM306975", "GSM306977", "GSM306979", "GSM306981", "GSM306983", "GSM306985", "GSM306987", "GSM306989", "GSM306991", "GSM306993", "GSM306995", "GSM306997" ], "type": "dose", "id": "GDS5282_2" }, { "dataset_id": "GDS5282", "description": "0 h", "sample_id": [ "GSM306951", "GSM306953", "GSM306955", "GSM306975", "GSM306977", "GSM306979" ], "type": "time", "id": "GDS5282_3" }, { "dataset_id": "GDS5282", "description": "4 h", "sample_id": [ "GSM306957", "GSM306959", "GSM306961", "GSM306981", "GSM306983", "GSM306985" ], "type": "time", "id": "GDS5282_4" }, { "dataset_id": "GDS5282", "description": "24 h", "sample_id": [ "GSM306963", "GSM306965", "GSM306967", "GSM306987", "GSM306989", "GSM306991" ], "type": "time", "id": "GDS5282_5" }, { "dataset_id": "GDS5282", "description": "48 h", "sample_id": [ "GSM306969", "GSM306971", "GSM306973", "GSM306993", "GSM306995", "GSM306997" ], "type": "time", "id": "GDS5282_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5282", "version": 1.0, "instances": "24", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5282.tab", "compression": "gz" } ], [ [ "GDS5283.tab" ], { "title": "Hexahydro-1,3,5-trinitro-1,3,5-triazine effect on the liver: dose response and time course", "description": "Analysis of livers of males for up to 48 hours after treatment with a single, oral, nonseizure-inducing dose of 3 or 18 mg/kg hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). RDX is a synthetic, high-impact, stable explosive. Results provide insight into the acute effects of RDX on the liver.", "type": "Expression profiling by array", "pubmed_id": "19239275", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE12196", "order": "none", "update_date": "Oct 02 2014", "subsets": [ { "dataset_id": "GDS5283", "description": "3 mg/kg RDX", "sample_id": [ "GSM306952", "GSM306954", "GSM306956", "GSM306958", "GSM306960", "GSM306962", "GSM306964", "GSM306966", "GSM306968", "GSM306970", "GSM306972", "GSM306974" ], "type": "dose", "id": "GDS5283_1" }, { "dataset_id": "GDS5283", "description": "18 mg/kg RDX", "sample_id": [ "GSM306976", "GSM306978", "GSM306980", "GSM306982", "GSM306984", "GSM306986", "GSM306988", "GSM306990", "GSM306992", "GSM306994", "GSM306996", "GSM306998" ], "type": "dose", "id": "GDS5283_2" }, { "dataset_id": "GDS5283", "description": "0 h", "sample_id": [ "GSM306952", "GSM306954", "GSM306956", "GSM306976", "GSM306978", "GSM306980" ], "type": "time", "id": "GDS5283_3" }, { "dataset_id": "GDS5283", "description": "4 h", "sample_id": [ "GSM306958", "GSM306960", "GSM306962", "GSM306982", "GSM306984", "GSM306986" ], "type": "time", "id": "GDS5283_4" }, { "dataset_id": "GDS5283", "description": "24 h", "sample_id": [ "GSM306964", "GSM306966", "GSM306968", "GSM306988", "GSM306990", "GSM306992" ], "type": "time", "id": "GDS5283_5" }, { "dataset_id": "GDS5283", "description": "48 h", "sample_id": [ "GSM306970", "GSM306972", "GSM306974", "GSM306994", "GSM306996", "GSM306998" ], "type": "time", "id": "GDS5283_6" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5283", "version": 1.0, "instances": "24", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5283.tab", "compression": "gz" } ], [ [ "GDS5284.tab" ], { "title": "Hepatocyte nuclear factor 4 alpha deficiency effect on the colon", "description": "Analysis of hepatocyte nuclear factor 4 alpha (HNF4-alpha) deficient colons of 1 year old animals. HNF4-alpha is a transcription factor. Deletion of HNF4-alpha confined to the epithelial colon. Results provide insight into the role of HNF4-alpha in maintaining intestinal inflammatory homeostasis.", "type": "Expression profiling by array", "pubmed_id": "19898610", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE11759", "order": "none", "update_date": "Oct 03 2014", "subsets": [ { "dataset_id": "GDS5284", "description": "HNF4-alpha null", "sample_id": [ "GSM297808", "GSM297820", "GSM297821" ], "type": "genotype/variation", "id": "GDS5284_1" }, { "dataset_id": "GDS5284", "description": "wild type", "sample_id": [ "GSM297817", "GSM297818", "GSM297819" ], "type": "genotype/variation", "id": "GDS5284_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5284", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5284.tab", "compression": "gz" } ], [ [ "GDS5285.tab" ], { "title": "Early B-cell factor 1 depletion effect on mature adipocyte cell line", "description": "Analysis of mature 3T3-L1 adipocyte cells depleted for early B-cell factor 1 (EBF1). EBF1 is required in adipogenesis. Results provide insight into the role of EBF1 in mature adipocytes.", "type": "Expression profiling by array", "pubmed_id": "24174531", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE58193", "order": "none", "update_date": "Oct 03 2014", "subsets": [ { "dataset_id": "GDS5285", "description": "control", "sample_id": [ "GSM1402903", "GSM1402904", "GSM1402905" ], "type": "protocol", "id": "GDS5285_1" }, { "dataset_id": "GDS5285", "description": "EBF1 depletion", "sample_id": [ "GSM1402906", "GSM1402907", "GSM1402908", "GSM1402909", "GSM1402910", "GSM1402911" ], "type": "protocol", "id": "GDS5285_2" }, { "dataset_id": "GDS5285", "description": "scrambled", "sample_id": [ "GSM1402903", "GSM1402904", "GSM1402905" ], "type": "agent", "id": "GDS5285_3" }, { "dataset_id": "GDS5285", "description": "EBF1 hairpin 1", "sample_id": [ "GSM1402906", "GSM1402907", "GSM1402908" ], "type": "agent", "id": "GDS5285_4" }, { "dataset_id": "GDS5285", "description": "EBF1 hairpin 2", "sample_id": [ "GSM1402909", "GSM1402910", "GSM1402911" ], "type": "agent", "id": "GDS5285_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5285", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5285.tab", "compression": "gz" } ], [ [ "GDS5286.tab" ], { "title": "Monocyte-derived dendritic cells from young and aged donors", "description": "Comparison of dendritic cells (DCs) from young (20 to 27 years) and aged (77 to 87 years) donors. DCs are antigen-presenting cells important in initiating and regulating innate and adaptive immune responses. Results provide insight into the molecular basis of the decline in DC function with age.", "type": "Expression profiling by array", "pubmed_id": "25191744", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE58015", "order": "none", "update_date": "Oct 22 2014", "subsets": [ { "dataset_id": "GDS5286", "description": "young", "sample_id": [ "GSM1399440", "GSM1399441", "GSM1399442", "GSM1399443" ], "type": "age", "id": "GDS5286_1" }, { "dataset_id": "GDS5286", "description": "aged", "sample_id": [ "GSM1399444", "GSM1399445", "GSM1399446", "GSM1399447", "GSM1399448" ], "type": "age", "id": "GDS5286_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5286", "version": 1.0, "instances": "9", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5286.tab", "compression": "gz" } ], [ [ "GDS5287.tab" ], { "title": "SMRT depleted breast cancer cell line response to estradiol: time course", "description": "Analysis of ER-alpha+ MCF7 breast cancer cells depleted for the silencing mediator of retinoic acid and thyroid hormone receptor (SMRT). SMRT depleted cells examined 4 and 24 hours following treatment with estradiol. Results provide insight into the role of SMRT in breast cancer progression.", "type": "Expression profiling by array", "pubmed_id": "24971610", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE57935", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5287", "description": "control", "sample_id": [ "GSM1397825", "GSM1397826", "GSM1397827", "GSM1397813", "GSM1397814", "GSM1397815", "GSM1397822", "GSM1397823", "GSM1397824", "GSM1397810", "GSM1397811", "GSM1397812" ], "type": "protocol", "id": "GDS5287_1" }, { "dataset_id": "GDS5287", "description": "SMRT depletion", "sample_id": [ "GSM1397831", "GSM1397832", "GSM1397833", "GSM1397819", "GSM1397820", "GSM1397821", "GSM1397828", "GSM1397829", "GSM1397830", "GSM1397816", "GSM1397817", "GSM1397818" ], "type": "protocol", "id": "GDS5287_2" }, { "dataset_id": "GDS5287", "description": "vehicle", "sample_id": [ "GSM1397822", "GSM1397823", "GSM1397824", "GSM1397810", "GSM1397811", "GSM1397812", "GSM1397828", "GSM1397829", "GSM1397830", "GSM1397816", "GSM1397817", "GSM1397818" ], "type": "agent", "id": "GDS5287_3" }, { "dataset_id": "GDS5287", "description": "estradiol", "sample_id": [ "GSM1397825", "GSM1397826", "GSM1397827", "GSM1397813", "GSM1397814", "GSM1397815", "GSM1397831", "GSM1397832", "GSM1397833", "GSM1397819", "GSM1397820", "GSM1397821" ], "type": "agent", "id": "GDS5287_4" }, { "dataset_id": "GDS5287", "description": "4 h", "sample_id": [ "GSM1397818", "GSM1397817", "GSM1397816", "GSM1397821", "GSM1397820", "GSM1397819", "GSM1397812", "GSM1397811", "GSM1397810", "GSM1397815", "GSM1397814", "GSM1397813" ], "type": "time", "id": "GDS5287_5" }, { "dataset_id": "GDS5287", "description": "24 h", "sample_id": [ "GSM1397830", "GSM1397829", "GSM1397828", "GSM1397833", "GSM1397832", "GSM1397831", "GSM1397824", "GSM1397823", "GSM1397822", "GSM1397827", "GSM1397826", "GSM1397825" ], "type": "time", "id": "GDS5287_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5287", "version": 1.0, "instances": "24", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5287.tab", "compression": "gz" } ], [ [ "GDS5288.tab" ], { "title": "PTPN1 depletion effect on Hodgkin lymphoma derived cell line", "description": "Analysis of KM-H2 Hodgkin lymphoma derived cells depleted for PTPN1. PTPN1 encodes PTP1B, a non-receptor-type member of the superfamily of protein tyrosine phosphatases. Results provide insight into the role of PTPN1 mutations in lymphomagenesis.", "type": "Expression profiling by array", "pubmed_id": "24531327", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE54157", "order": "none", "update_date": "Oct 03 2014", "subsets": [ { "dataset_id": "GDS5288", "description": "PTPN1 depletion", "sample_id": [ "GSM1308977", "GSM1308978" ], "type": "protocol", "id": "GDS5288_1" }, { "dataset_id": "GDS5288", "description": "control", "sample_id": [ "GSM1308975", "GSM1308976" ], "type": "protocol", "id": "GDS5288_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5288", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5288.tab", "compression": "gz" } ], [ [ "GDS5289.tab" ], { "title": "Lung eosinophil response to allergen challenge", "description": "Analysis of lung eosinophils of sensitized animals exposed intranasally to ovalbumin to induce eosinophilia. Eosinophilia, higher than normal eosinophil count, is a feature of allergic asthma. Results provide insight into the molecular response of eosinophils to allergen challenge.", "type": "Expression profiling by array", "pubmed_id": "24808371", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE57757", "order": "none", "update_date": "Oct 06 2014", "subsets": [ { "dataset_id": "GDS5289", "description": "control", "sample_id": [ "GSM1388131", "GSM1388132", "GSM1388133", "GSM1388134" ], "type": "agent", "id": "GDS5289_1" }, { "dataset_id": "GDS5289", "description": "ovalbumin", "sample_id": [ "GSM1388135", "GSM1388136", "GSM1388137" ], "type": "agent", "id": "GDS5289_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5289", "version": 1.0, "instances": "7", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5289.tab", "compression": "gz" } ], [ [ "GDS529.tab" ], { "title": "Oxidative stress and glutaredoxin 5-deficient mutant", "description": "Transcriptome analysis of glutaredoxin 5-deficient (grx5) mutant, a model for continuous moderate oxidative stress. Respiratory petite (pet117) mutants and wild type also examined.", "type": "Expression profiling by array", "pubmed_id": "14722110", "platform": "GPL772", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6144", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE910", "order": "none", "update_date": "Mar 29 2004", "subsets": [ { "dataset_id": "GDS529", "description": "wild type", "sample_id": [ "GSM13717", "GSM13719", "GSM13722" ], "type": "strain", "id": "GDS529_1" }, { "dataset_id": "GDS529", "description": "grx5 mutant", "sample_id": [ "GSM13727", "GSM13729", "GSM13730" ], "type": "strain", "id": "GDS529_2" }, { "dataset_id": "GDS529", "description": "pet117 mutant", "sample_id": [ "GSM13732", "GSM13733", "GSM13734" ], "type": "strain", "id": "GDS529_3" } ], "taxid": "4932", "genes": 6029, "aggregation_function": "mean", "name": "GDS529", "version": 1.0, "instances": "9", "variables": 6031, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS529.tab", "compression": "gz" } ], [ [ "GDS5291.tab" ], { "title": "T helper type 9 cells", "description": "Analysis of naive CD4+ T cells cultured under T helper type 9 (Th9), Th2, or Treg conditions for 5 days. Th9 cells are a subpopulation of CD4+ effector T cells that secrete high levels of interleukin-9. Results provide insight into the molecular basis of the Th9 phenotype.", "type": "Expression profiling by array", "pubmed_id": "24216482", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE44937", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5291", "description": "T helper 9", "sample_id": [ "GSM1094166", "GSM1094167", "GSM1094168" ], "type": "cell type", "id": "GDS5291_1" }, { "dataset_id": "GDS5291", "description": "T helper 2", "sample_id": [ "GSM1094163", "GSM1094164", "GSM1094165" ], "type": "cell type", "id": "GDS5291_2" }, { "dataset_id": "GDS5291", "description": "T regulatory", "sample_id": [ "GSM1094172", "GSM1094173", "GSM1094174" ], "type": "cell type", "id": "GDS5291_3" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5291", "version": 1.0, "instances": "9", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5291.tab", "compression": "gz" } ], [ [ "GDS5292.tab" ], { "title": "TRPV1 activation effect on epithelial cell line", "description": "Analyis of epi 4 gingival cells treated with capsaicin, the pungent compound present in red chilies. Capsaicin is an activator of transient receptor potential cation channel subfamily V member 1 (TRPV1). Results provide insight into the function of TRPV1 in gingival cells.", "type": "Expression profiling by array", "pubmed_id": "25266715", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE57759", "order": "none", "update_date": "Oct 07 2014", "subsets": [ { "dataset_id": "GDS5292", "description": "control", "sample_id": [ "GSM1388156", "GSM1388157", "GSM1388158", "GSM1388159" ], "type": "agent", "id": "GDS5292_1" }, { "dataset_id": "GDS5292", "description": "capsaicin", "sample_id": [ "GSM1388160", "GSM1388161", "GSM1388162", "GSM1388163" ], "type": "agent", "id": "GDS5292_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5292", "version": 1.0, "instances": "8", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5292.tab", "compression": "gz" } ], [ [ "GDS5293.tab" ], { "title": "Maternal western diet effect on post-weaning western diet fed offspring liver", "description": "Analysis of liver of C57BL/6J male offspring exposed prenatally to a western-style diet (rich in energy, fat, cholesterol) or a low-fat diet and then a post-weaning western diet. Results provide insight into the role of maternal western diet in the development of liver disease in offspring.", "type": "Expression profiling by array", "pubmed_id": "24224789", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE44901", "order": "none", "update_date": "Dec 30 2015", "subsets": [ { "dataset_id": "GDS5293", "description": "prenatal western diet, post-weaning western diet", "sample_id": [ "GSM1093600", "GSM1093602", "GSM1093604", "GSM1093609", "GSM1093615", "GSM1093619" ], "type": "protocol", "id": "GDS5293_1" }, { "dataset_id": "GDS5293", "description": "prenatal low-fat diet, post-weaning western diet", "sample_id": [ "GSM1093599", "GSM1093601", "GSM1093605", "GSM1093608", "GSM1093612" ], "type": "protocol", "id": "GDS5293_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5293", "version": 1.0, "instances": "11", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5293.tab", "compression": "gz" } ], [ [ "GDS5294.tab" ], { "title": "HIV-1 Vpr effect on monocyte-derived macrophage", "description": "Analysis of monocyte-derived macrophages infected with a recombinant adenovirus expressing the HIV-1 Vpr protein. HIV-1 Vpr is a multi-functional protein involved in HIV-1 replication and pathogenesis. Results provide further insight into the role of HIV-1 Vpr in HIV-1 infected macrophages.", "type": "Expression profiling by array", "pubmed_id": "25170834", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE56591", "order": "none", "update_date": "Oct 08 2014", "subsets": [ { "dataset_id": "GDS5294", "description": "donor 1", "sample_id": [ "GSM1365128", "GSM1365129" ], "type": "individual", "id": "GDS5294_1" }, { "dataset_id": "GDS5294", "description": "donor 2", "sample_id": [ "GSM1365130", "GSM1365131" ], "type": "individual", "id": "GDS5294_2" }, { "dataset_id": "GDS5294", "description": "Vpr", "sample_id": [ "GSM1365128", "GSM1365130" ], "type": "agent", "id": "GDS5294_3" }, { "dataset_id": "GDS5294", "description": "control", "sample_id": [ "GSM1365129", "GSM1365131" ], "type": "agent", "id": "GDS5294_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5294", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5294.tab", "compression": "gz" } ], [ [ "GDS5295.tab" ], { "title": "Kelch-like family member 40 deficiency effect on the skeletal muscle", "description": "Analysis of quadriceps muscles of mutants lacking kelch-like family member 40 (KLHL40). KLHL40 mutations occur in severe nemaline myopathies (NMs). NMs are congenital myopathies that can result in lethal muscle dysfunction. Results provide insight into the role of KLHL40 in the pathogenesis of NM.", "type": "Expression profiling by array", "pubmed_id": "24960163", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE56570", "order": "none", "update_date": "Oct 08 2014", "subsets": [ { "dataset_id": "GDS5295", "description": "wild type", "sample_id": [ "GSM1364045", "GSM1364046", "GSM1364047" ], "type": "genotype/variation", "id": "GDS5295_1" }, { "dataset_id": "GDS5295", "description": "KLHL40 null", "sample_id": [ "GSM1364048", "GSM1364049", "GSM1364050" ], "type": "genotype/variation", "id": "GDS5295_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5295", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5295.tab", "compression": "gz" } ], [ [ "GDS5296.tab" ], { "title": "Three dimensional culturing effect on dermal papilla cells", "description": "Analysis of intact papillae isolated from male occipital scalp skin, 2D cultures of dermal papilla (DP) cells (passage 1, 3, 5) and 3D spheroid cultures of DP cells. Results provide insight into molecular mechanisms underlying spatial environment influences regulating dermal papilla cell induction.", "type": "Expression profiling by array", "pubmed_id": "24145441", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE44765", "order": "none", "update_date": "Oct 08 2014", "subsets": [ { "dataset_id": "GDS5296", "description": "intact dermal papilla tissue", "sample_id": [ "GSM1090232", "GSM1090233", "GSM1090234" ], "type": "cell type", "id": "GDS5296_1" }, { "dataset_id": "GDS5296", "description": "cultured dermal papilla cells", "sample_id": [ "GSM1090235", "GSM1090236", "GSM1090237", "GSM1090238", "GSM1090239", "GSM1090240", "GSM1090241", "GSM1090242", "GSM1090243", "GSM1090244", "GSM1090245", "GSM1090246" ], "type": "cell type", "id": "GDS5296_2" }, { "dataset_id": "GDS5296", "description": "cultured cell dermal papilla spheroids", "sample_id": [ "GSM1090247", "GSM1090248", "GSM1090249" ], "type": "cell type", "id": "GDS5296_3" }, { "dataset_id": "GDS5296", "description": "passage 0", "sample_id": [ "GSM1090237", "GSM1090236", "GSM1090235" ], "type": "other", "id": "GDS5296_4" }, { "dataset_id": "GDS5296", "description": "passage 1", "sample_id": [ "GSM1090240", "GSM1090239", "GSM1090238" ], "type": "other", "id": "GDS5296_5" }, { "dataset_id": "GDS5296", "description": "passage 3", "sample_id": [ "GSM1090249", "GSM1090248", "GSM1090247", "GSM1090243", "GSM1090242", "GSM1090241" ], "type": "other", "id": "GDS5296_6" }, { "dataset_id": "GDS5296", "description": "passage 5", "sample_id": [ "GSM1090246", "GSM1090245", "GSM1090244" ], "type": "other", "id": "GDS5296_7" }, { "dataset_id": "GDS5296", "description": "n/a", "sample_id": [ "GSM1090234", "GSM1090233", "GSM1090232" ], "type": "other", "id": "GDS5296_8" }, { "dataset_id": "GDS5296", "description": "donor D5", "sample_id": [ "GSM1090232", "GSM1090235", "GSM1090238", "GSM1090241", "GSM1090244", "GSM1090247" ], "type": "individual", "id": "GDS5296_9" }, { "dataset_id": "GDS5296", "description": "donor D6", "sample_id": [ "GSM1090233", "GSM1090236", "GSM1090239", "GSM1090242", "GSM1090245", "GSM1090248" ], "type": "individual", "id": "GDS5296_10" }, { "dataset_id": "GDS5296", "description": "donor D7", "sample_id": [ "GSM1090234", "GSM1090237", "GSM1090240", "GSM1090243", "GSM1090246", "GSM1090249" ], "type": "individual", "id": "GDS5296_11" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5296", "version": 1.0, "instances": "18", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5296.tab", "compression": "gz" } ], [ [ "GDS5297.tab" ], { "title": "Fezf2 overexpresson effect on cortical neural progenitors in vivo: time course", "description": "Analysis of cortical neural progenitor cells overexpressing forebrain expressed zinc finger 2 (Fezf2) for 24 and 48 hours. Fezf2 expression vectors delivered to cells in utero. Results provide insight into the role of Fezf2 in the differentiation of corticospinal motor neurons from progenitors.", "type": "Expression profiling by array", "pubmed_id": "24997765", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE56451", "order": "none", "update_date": "Oct 08 2014", "subsets": [ { "dataset_id": "GDS5297", "description": "24 h", "sample_id": [ "GSM1361715", "GSM1361716", "GSM1361717", "GSM1361722", "GSM1361723", "GSM1361724" ], "type": "time", "id": "GDS5297_1" }, { "dataset_id": "GDS5297", "description": "48 h", "sample_id": [ "GSM1361718", "GSM1361719", "GSM1361720", "GSM1361721", "GSM1361725", "GSM1361726", "GSM1361727", "GSM1361728" ], "type": "time", "id": "GDS5297_2" }, { "dataset_id": "GDS5297", "description": "Fezf2 overexpression", "sample_id": [ "GSM1361722", "GSM1361723", "GSM1361724", "GSM1361725", "GSM1361726", "GSM1361727", "GSM1361728" ], "type": "protocol", "id": "GDS5297_3" }, { "dataset_id": "GDS5297", "description": "control", "sample_id": [ "GSM1361715", "GSM1361716", "GSM1361717", "GSM1361718", "GSM1361719", "GSM1361720", "GSM1361721" ], "type": "protocol", "id": "GDS5297_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5297", "version": 1.0, "instances": "14", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5297.tab", "compression": "gz" } ], [ [ "GDS5298.tab" ], { "title": "miR-28 expression effect on Burkitt lymphoma cell line: time course", "description": "Analysis of P3HR1 Burkitt lymphoma (BL) cells expressing miR-28 for 12 and 24 hours. BL is a highly aggressive B-cell non-Hodgkin lymphoma. miR-28 is downregulated in BL. Results provide insight into the role of miR-28 in the pathogenesis of BL.", "type": "Expression profiling by array", "pubmed_id": "24843176", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE56268", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5298", "description": "12 h", "sample_id": [ "GSM1358007", "GSM1358008", "GSM1358009", "GSM1358010", "GSM1358011", "GSM1358012", "GSM1358013", "GSM1358014", "GSM1358015", "GSM1358016", "GSM1358017", "GSM1358018" ], "type": "time", "id": "GDS5298_1" }, { "dataset_id": "GDS5298", "description": "24 h", "sample_id": [ "GSM1358019", "GSM1358020", "GSM1358021", "GSM1358022", "GSM1358023", "GSM1358024", "GSM1358025", "GSM1358026", "GSM1358027", "GSM1358028", "GSM1358029", "GSM1358030" ], "type": "time", "id": "GDS5298_2" }, { "dataset_id": "GDS5298", "description": "control", "sample_id": [ "GSM1358007", "GSM1358008", "GSM1358009", "GSM1358010", "GSM1358011", "GSM1358012", "GSM1358019", "GSM1358020", "GSM1358021", "GSM1358022", "GSM1358023", "GSM1358024" ], "type": "protocol", "id": "GDS5298_3" }, { "dataset_id": "GDS5298", "description": "miR-28 expression", "sample_id": [ "GSM1358013", "GSM1358014", "GSM1358015", "GSM1358016", "GSM1358017", "GSM1358018", "GSM1358025", "GSM1358026", "GSM1358027", "GSM1358028", "GSM1358029", "GSM1358030" ], "type": "protocol", "id": "GDS5298_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5298", "version": 1.0, "instances": "24", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5298.tab", "compression": "gz" } ], [ [ "GDS5299.tab" ], { "title": "Restless Legs Syndrome model: adult whole brain", "description": "Analysis of forebrain from male adults heterozygous for the Meis1tm1Mtor allele. These animals express only one functional allele of Meis1, modeling the reduced expression of MEIS1 in Restless Legs Syndrome (RLS) patients. Results provide insight the role of MEIS1 in RLS pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24642863", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE44592", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5299", "description": "Meis1 heterozygote", "sample_id": [ "GSM1110008", "GSM1110009", "GSM1110010", "GSM1110011" ], "type": "genotype/variation", "id": "GDS5299_1" }, { "dataset_id": "GDS5299", "description": "Meis1 wild type", "sample_id": [ "GSM1110005", "GSM1110006", "GSM1110007" ], "type": "genotype/variation", "id": "GDS5299_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5299", "version": 1.0, "instances": "7", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5299.tab", "compression": "gz" } ], [ [ "GDS53.tab" ], { "title": "CD34+ cell analysis", "description": "Comparison of gene expression in CD34+ cells from bone marrow and G-CSF-mobilized peripheral blood to investigate why the latter are optimal for allogeneic transplant recipients.", "type": "Expression profiling by array", "pubmed_id": "11669215", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE500", "order": "none", "update_date": "Jul 01 2003", "subsets": [ { "dataset_id": "GDS53", "description": "CD34+ from bone marrow", "sample_id": [ "GSM575", "GSM576", "GSM577" ], "type": "cell type", "id": "GDS53_1" }, { "dataset_id": "GDS53", "description": "CD34+ from G-CSF-mobilized peripheral blood", "sample_id": [ "GSM578", "GSM579" ], "type": "cell type", "id": "GDS53_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS53", "version": 1.0, "instances": "5", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS53.tab", "compression": "gz" } ], [ [ "GDS5300.tab" ], { "title": "Restless Legs Syndrome model: embryonic forebrain", "description": "Analysis of forebrain from male and female E12.5 embryos heterozygous for the Meis1tm1Mtor allele. These animals express only one functional allele of Meis1, modeling the reduced expression of MEIS1 in Restless Legs Syndrome (RLS) patients. Results provide insight the role of MEIS1 in RLS.", "type": "Expression profiling by array", "pubmed_id": "24642863", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE44592", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5300", "description": "Meis1 heterozygote", "sample_id": [ "GSM1087500", "GSM1087504", "GSM1087505", "GSM1087495", "GSM1087496", "GSM1087506" ], "type": "genotype/variation", "id": "GDS5300_1" }, { "dataset_id": "GDS5300", "description": "Meis1 homozygote", "sample_id": [ "GSM1087497", "GSM1087507", "GSM1087494", "GSM1087499", "GSM1087502" ], "type": "genotype/variation", "id": "GDS5300_2" }, { "dataset_id": "GDS5300", "description": "Meis1 wild type", "sample_id": [ "GSM1087501", "GSM1087509", "GSM1087498", "GSM1087503", "GSM1087508" ], "type": "genotype/variation", "id": "GDS5300_3" }, { "dataset_id": "GDS5300", "description": "male", "sample_id": [ "GSM1087498", "GSM1087503", "GSM1087508", "GSM1087494", "GSM1087499", "GSM1087502", "GSM1087495", "GSM1087496", "GSM1087506" ], "type": "gender", "id": "GDS5300_4" }, { "dataset_id": "GDS5300", "description": "female", "sample_id": [ "GSM1087501", "GSM1087509", "GSM1087497", "GSM1087507", "GSM1087500", "GSM1087504", "GSM1087505" ], "type": "gender", "id": "GDS5300_5" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5300", "version": 1.0, "instances": "16", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5300.tab", "compression": "gz" } ], [ [ "GDS5301.tab" ], { "title": "Androgen deprivation effect on CD4 T-cells", "description": "Analysis of CD4 T cells from castrated animals. Testosterone levels had been observed to be inversely correlated to the strength of the immune response. Results provide insight into the molecular basis of this observation.", "type": "Expression profiling by array", "pubmed_id": "24958858", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE54945", "order": "none", "update_date": "Oct 08 2014", "subsets": [ { "dataset_id": "GDS5301", "description": "castration", "sample_id": [ "GSM1327041", "GSM1327042" ], "type": "protocol", "id": "GDS5301_1" }, { "dataset_id": "GDS5301", "description": "control", "sample_id": [ "GSM1327039", "GSM1327040" ], "type": "protocol", "id": "GDS5301_2" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5301", "version": 1.0, "instances": "4", "variables": 31812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5301.tab", "compression": "gz" } ], [ [ "GDS5302.tab" ], { "title": "Negative elongation factor B subunit deficiency effect on the heart", "description": "Analysis of heart left ventricles from mutants lacking the B subunit of negative elongation factor (NELF). NELF is a regulator of RNA polymerase II pausing. Results provide insight into the role of NELF in myocardial function.", "type": "Expression profiling by array", "pubmed_id": "24656816", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE54372", "order": "none", "update_date": "Nov 24 2014", "subsets": [ { "dataset_id": "GDS5302", "description": "control", "sample_id": [ "GSM1314041", "GSM1314042", "GSM1314043" ], "type": "genotype/variation", "id": "GDS5302_1" }, { "dataset_id": "GDS5302", "description": "NELF B subunit deletion", "sample_id": [ "GSM1314044", "GSM1314045", "GSM1314046" ], "type": "genotype/variation", "id": "GDS5302_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5302", "version": 1.0, "instances": "6", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5302.tab", "compression": "gz" } ], [ [ "GDS5303.tab" ], { "title": "Transcription factor EB overexpression effect on brain hippocampus with an accumulation of mutant tau deposits", "description": "Analysis of hippocampi of Tg4510 animals overexpressing transcription factor EB (TFEB). Tg4510 animals, a model for Alzheimer\u2019s disease (AD), express the P301L mutant microtubule-associated protein tau. Results provide insight into the molecular effects of TFEB on tauopathy diseases including AD.", "type": "Expression profiling by array", "pubmed_id": "25069841", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE53480", "order": "none", "update_date": "Feb 12 2015", "subsets": [ { "dataset_id": "GDS5303", "description": "wild type", "sample_id": [ "GSM1294380", "GSM1294381", "GSM1294385", "GSM1294386", "GSM1294371", "GSM1294376", "GSM1294377", "GSM1294384" ], "type": "genotype/variation", "id": "GDS5303_1" }, { "dataset_id": "GDS5303", "description": "Tg4510", "sample_id": [ "GSM1294374", "GSM1294379", "GSM1294382", "GSM1294383", "GSM1294372", "GSM1294373", "GSM1294375", "GSM1294378" ], "type": "genotype/variation", "id": "GDS5303_2" }, { "dataset_id": "GDS5303", "description": "TFEB overexpression", "sample_id": [ "GSM1294372", "GSM1294373", "GSM1294375", "GSM1294378", "GSM1294371", "GSM1294376", "GSM1294377", "GSM1294384" ], "type": "protocol", "id": "GDS5303_3" }, { "dataset_id": "GDS5303", "description": "control", "sample_id": [ "GSM1294374", "GSM1294379", "GSM1294382", "GSM1294383", "GSM1294380", "GSM1294381", "GSM1294385", "GSM1294386" ], "type": "protocol", "id": "GDS5303_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5303", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5303.tab", "compression": "gz" } ], [ [ "GDS5304.tab" ], { "title": "Edelfosine effect on unstimulated CD4+ T cells: dose response", "description": "Analysis of unstimulated CD4+ T cells (derived from buffy coat PBMCs) treated with edelfosine at 3.3 or 10 \u00b5g/ml. Edelfosine is a cytotoxic drug taken up by highly proliferating cells such as activated immune cells. Results provide insight into molecular basis of edelfosine action in immune Tcells.", "type": "Expression profiling by array", "pubmed_id": "24667731", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE44392", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5304", "description": "control", "sample_id": [ "GSM1084263", "GSM1084262", "GSM1084261", "GSM1084260" ], "type": "agent", "id": "GDS5304_1" }, { "dataset_id": "GDS5304", "description": "edelfosine", "sample_id": [ "GSM1084267", "GSM1084266", "GSM1084265", "GSM1084264", "GSM1084271", "GSM1084270", "GSM1084269", "GSM1084268" ], "type": "agent", "id": "GDS5304_2" }, { "dataset_id": "GDS5304", "description": "control", "sample_id": [ "GSM1084263", "GSM1084262", "GSM1084261", "GSM1084260" ], "type": "dose", "id": "GDS5304_3" }, { "dataset_id": "GDS5304", "description": "3.3 \u00b5g/ml", "sample_id": [ "GSM1084267", "GSM1084266", "GSM1084265", "GSM1084264" ], "type": "dose", "id": "GDS5304_4" }, { "dataset_id": "GDS5304", "description": "10 \u00b5g/ml", "sample_id": [ "GSM1084271", "GSM1084270", "GSM1084269", "GSM1084268" ], "type": "dose", "id": "GDS5304_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5304", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5304.tab", "compression": "gz" } ], [ [ "GDS5306.tab" ], { "title": "Human epidermal growth factor receptor 2-positive breast cancer brain metastases", "description": "Analysis of HER2+ breast cancer brain metastasis specimens and HER2+ nonmetastatic primary breast tumors. Samples were matched for patient age upon primary tumor detection and ER status of primary tumor. Results provide insight into the molecular basis of HER2+ breast cancer outgrowth in the brain.", "type": "Expression profiling by array", "pubmed_id": "24625110", "platform": "GPL1352", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "61359", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "38", "value_type": "count", "reference_series": "GSE43837", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5306", "description": "J3", "sample_id": [ "GSM1071862" ], "type": "specimen", "id": "GDS5306_1" }, { "dataset_id": "GDS5306", "description": "BT25", "sample_id": [ "GSM1071863" ], "type": "specimen", "id": "GDS5306_2" }, { "dataset_id": "GDS5306", "description": "J12", "sample_id": [ "GSM1071864" ], "type": "specimen", "id": "GDS5306_3" }, { "dataset_id": "GDS5306", "description": "BT16", "sample_id": [ "GSM1071865" ], "type": "specimen", "id": "GDS5306_4" }, { "dataset_id": "GDS5306", "description": "J8", "sample_id": [ "GSM1071866" ], "type": "specimen", "id": "GDS5306_5" }, { "dataset_id": "GDS5306", "description": "BT34", "sample_id": [ "GSM1071867" ], "type": "specimen", "id": "GDS5306_6" }, { "dataset_id": "GDS5306", "description": "J1", "sample_id": [ "GSM1071868" ], "type": "specimen", "id": "GDS5306_7" }, { "dataset_id": "GDS5306", "description": "BT11", "sample_id": [ "GSM1071869" ], "type": "specimen", "id": "GDS5306_8" }, { "dataset_id": "GDS5306", "description": "J2", "sample_id": [ "GSM1071870" ], "type": "specimen", "id": "GDS5306_9" }, { "dataset_id": "GDS5306", "description": "BT30", "sample_id": [ "GSM1071871" ], "type": "specimen", "id": "GDS5306_10" }, { "dataset_id": "GDS5306", "description": "J4", "sample_id": [ "GSM1071872" ], "type": "specimen", "id": "GDS5306_11" }, { "dataset_id": "GDS5306", "description": "BT57", "sample_id": [ "GSM1071873" ], "type": "specimen", "id": "GDS5306_12" }, { "dataset_id": "GDS5306", "description": "J5", "sample_id": [ "GSM1071874" ], "type": "specimen", "id": "GDS5306_13" }, { "dataset_id": "GDS5306", "description": "BT51", "sample_id": [ "GSM1071875" ], "type": "specimen", "id": "GDS5306_14" }, { "dataset_id": "GDS5306", "description": "BT31", "sample_id": [ "GSM1071876" ], "type": "specimen", "id": "GDS5306_15" }, { "dataset_id": "GDS5306", "description": "J7", "sample_id": [ "GSM1071877" ], "type": "specimen", "id": "GDS5306_16" }, { "dataset_id": "GDS5306", "description": "J10", "sample_id": [ "GSM1071878" ], "type": "specimen", "id": "GDS5306_17" }, { "dataset_id": "GDS5306", "description": "J11", "sample_id": [ "GSM1071879" ], "type": "specimen", "id": "GDS5306_18" }, { "dataset_id": "GDS5306", "description": "BT40", "sample_id": [ "GSM1071880" ], "type": "specimen", "id": "GDS5306_19" }, { "dataset_id": "GDS5306", "description": "MGH16", "sample_id": [ "GSM1071881" ], "type": "specimen", "id": "GDS5306_20" }, { "dataset_id": "GDS5306", "description": "MGH42", "sample_id": [ "GSM1071882" ], "type": "specimen", "id": "GDS5306_21" }, { "dataset_id": "GDS5306", "description": "MGH46", "sample_id": [ "GSM1071883" ], "type": "specimen", "id": "GDS5306_22" }, { "dataset_id": "GDS5306", "description": "MGH133", "sample_id": [ "GSM1071884" ], "type": "specimen", "id": "GDS5306_23" }, { "dataset_id": "GDS5306", "description": "MGH153", "sample_id": [ "GSM1071885" ], "type": "specimen", "id": "GDS5306_24" }, { "dataset_id": "GDS5306", "description": "MGH351", "sample_id": [ "GSM1071886" ], "type": "specimen", "id": "GDS5306_25" }, { "dataset_id": "GDS5306", "description": "MGH1104", "sample_id": [ "GSM1071887" ], "type": "specimen", "id": "GDS5306_26" }, { "dataset_id": "GDS5306", "description": "MGH574", "sample_id": [ "GSM1071888" ], "type": "specimen", "id": "GDS5306_27" }, { "dataset_id": "GDS5306", "description": "MGH434", "sample_id": [ "GSM1071889" ], "type": "specimen", "id": "GDS5306_28" }, { "dataset_id": "GDS5306", "description": "MGH450", "sample_id": [ "GSM1071890" ], "type": "specimen", "id": "GDS5306_29" }, { "dataset_id": "GDS5306", "description": "MGH421", "sample_id": [ "GSM1071891" ], "type": "specimen", "id": "GDS5306_30" }, { "dataset_id": "GDS5306", "description": "MGH482", "sample_id": [ "GSM1071892" ], "type": "specimen", "id": "GDS5306_31" }, { "dataset_id": "GDS5306", "description": "MGH963", "sample_id": [ "GSM1071893" ], "type": "specimen", "id": "GDS5306_32" }, { "dataset_id": "GDS5306", "description": "MGH455", "sample_id": [ "GSM1071894" ], "type": "specimen", "id": "GDS5306_33" }, { "dataset_id": "GDS5306", "description": "MGH1084", "sample_id": [ "GSM1071895" ], "type": "specimen", "id": "GDS5306_34" }, { "dataset_id": "GDS5306", "description": "MGH1038", "sample_id": [ "GSM1071896" ], "type": "specimen", "id": "GDS5306_35" }, { "dataset_id": "GDS5306", "description": "MGH1057", "sample_id": [ "GSM1071897" ], "type": "specimen", "id": "GDS5306_36" }, { "dataset_id": "GDS5306", "description": "MGH674", "sample_id": [ "GSM1071898" ], "type": "specimen", "id": "GDS5306_37" }, { "dataset_id": "GDS5306", "description": "MGH1102", "sample_id": [ "GSM1071899" ], "type": "specimen", "id": "GDS5306_38" }, { "dataset_id": "GDS5306", "description": "brain metastatic breast cancer", "sample_id": [ "GSM1071866", "GSM1071877", "GSM1071874", "GSM1071872", "GSM1071862", "GSM1071870", "GSM1071864", "GSM1071879", "GSM1071878", "GSM1071868", "GSM1071873", "GSM1071875", "GSM1071880", "GSM1071867", "GSM1071876", "GSM1071871", "GSM1071863", "GSM1071865", "GSM1071869" ], "type": "disease state", "id": "GDS5306_39" }, { "dataset_id": "GDS5306", "description": "nonmetastatic breast cancer", "sample_id": [ "GSM1071893", "GSM1071898", "GSM1071888", "GSM1071892", "GSM1071883", "GSM1071894", "GSM1071890", "GSM1071889", "GSM1071891", "GSM1071882", "GSM1071886", "GSM1071881", "GSM1071885", "GSM1071884", "GSM1071887", "GSM1071899", "GSM1071895", "GSM1071897", "GSM1071896" ], "type": "disease state", "id": "GDS5306_40" }, { "dataset_id": "GDS5306", "description": "brain metastasis", "sample_id": [ "GSM1071866", "GSM1071877", "GSM1071874", "GSM1071872", "GSM1071862", "GSM1071870", "GSM1071864", "GSM1071879", "GSM1071878", "GSM1071868", "GSM1071873", "GSM1071875", "GSM1071880", "GSM1071867", "GSM1071876", "GSM1071871", "GSM1071863", "GSM1071865", "GSM1071869" ], "type": "tissue", "id": "GDS5306_41" }, { "dataset_id": "GDS5306", "description": "primary breast tumor", "sample_id": [ "GSM1071893", "GSM1071898", "GSM1071888", "GSM1071892", "GSM1071883", "GSM1071894", "GSM1071890", "GSM1071889", "GSM1071891", "GSM1071882", "GSM1071886", "GSM1071881", "GSM1071885", "GSM1071884", "GSM1071887", "GSM1071899", "GSM1071895", "GSM1071897", "GSM1071896" ], "type": "tissue", "id": "GDS5306_42" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH16", "sample_id": [ "GSM1071862" ], "type": "other", "id": "GDS5306_43" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH42", "sample_id": [ "GSM1071863" ], "type": "other", "id": "GDS5306_44" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH46", "sample_id": [ "GSM1071864" ], "type": "other", "id": "GDS5306_45" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH133", "sample_id": [ "GSM1071865" ], "type": "other", "id": "GDS5306_46" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH153", "sample_id": [ "GSM1071866" ], "type": "other", "id": "GDS5306_47" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH351", "sample_id": [ "GSM1071867" ], "type": "other", "id": "GDS5306_48" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH1104", "sample_id": [ "GSM1071868" ], "type": "other", "id": "GDS5306_49" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH574", "sample_id": [ "GSM1071869" ], "type": "other", "id": "GDS5306_50" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH434", "sample_id": [ "GSM1071870" ], "type": "other", "id": "GDS5306_51" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH450", "sample_id": [ "GSM1071871" ], "type": "other", "id": "GDS5306_52" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH421", "sample_id": [ "GSM1071872" ], "type": "other", "id": "GDS5306_53" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH482", "sample_id": [ "GSM1071873" ], "type": "other", "id": "GDS5306_54" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH963", "sample_id": [ "GSM1071874" ], "type": "other", "id": "GDS5306_55" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH455", "sample_id": [ "GSM1071875" ], "type": "other", "id": "GDS5306_56" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH1084", "sample_id": [ "GSM1071876" ], "type": "other", "id": "GDS5306_57" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH1038", "sample_id": [ "GSM1071877" ], "type": "other", "id": "GDS5306_58" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH1057", "sample_id": [ "GSM1071878" ], "type": "other", "id": "GDS5306_59" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH674", "sample_id": [ "GSM1071879" ], "type": "other", "id": "GDS5306_60" }, { "dataset_id": "GDS5306", "description": "matched specimen MGH1102", "sample_id": [ "GSM1071880" ], "type": "other", "id": "GDS5306_61" }, { "dataset_id": "GDS5306", "description": "matched specimen J3", "sample_id": [ "GSM1071881" ], "type": "other", "id": "GDS5306_62" }, { "dataset_id": "GDS5306", "description": "matched specimen BT25", "sample_id": [ "GSM1071882" ], "type": "other", "id": "GDS5306_63" }, { "dataset_id": "GDS5306", "description": "matched specimen J12", "sample_id": [ "GSM1071883" ], "type": "other", "id": "GDS5306_64" }, { "dataset_id": "GDS5306", "description": "matched specimen BT16", "sample_id": [ "GSM1071884" ], "type": "other", "id": "GDS5306_65" }, { "dataset_id": "GDS5306", "description": "matched specimen J8", "sample_id": [ "GSM1071885" ], "type": "other", "id": "GDS5306_66" }, { "dataset_id": "GDS5306", "description": "matched specimen BT34", "sample_id": [ "GSM1071886" ], "type": "other", "id": "GDS5306_67" }, { "dataset_id": "GDS5306", "description": "matched specimen J1", "sample_id": [ "GSM1071887" ], "type": "other", "id": "GDS5306_68" }, { "dataset_id": "GDS5306", "description": "matched specimen BT11", "sample_id": [ "GSM1071888" ], "type": "other", "id": "GDS5306_69" }, { "dataset_id": "GDS5306", "description": "matched specimen J2", "sample_id": [ "GSM1071889" ], "type": "other", "id": "GDS5306_70" }, { "dataset_id": "GDS5306", "description": "matched specimen BT30", "sample_id": [ "GSM1071890" ], "type": "other", "id": "GDS5306_71" }, { "dataset_id": "GDS5306", "description": "matched specimen J4", "sample_id": [ "GSM1071891" ], "type": "other", "id": "GDS5306_72" }, { "dataset_id": "GDS5306", "description": "matched specimen BT57", "sample_id": [ "GSM1071892" ], "type": "other", "id": "GDS5306_73" }, { "dataset_id": "GDS5306", "description": "matched specimen J5", "sample_id": [ "GSM1071893" ], "type": "other", "id": "GDS5306_74" }, { "dataset_id": "GDS5306", "description": "matched specimen BT51", "sample_id": [ "GSM1071894" ], "type": "other", "id": "GDS5306_75" }, { "dataset_id": "GDS5306", "description": "matched specimen BT31", "sample_id": [ "GSM1071895" ], "type": "other", "id": "GDS5306_76" }, { "dataset_id": "GDS5306", "description": "matched specimen J7", "sample_id": [ "GSM1071896" ], "type": "other", "id": "GDS5306_77" }, { "dataset_id": "GDS5306", "description": "matched specimen J10", "sample_id": [ "GSM1071897" ], "type": "other", "id": "GDS5306_78" }, { "dataset_id": "GDS5306", "description": "matched specimen J11", "sample_id": [ "GSM1071898" ], "type": "other", "id": "GDS5306_79" }, { "dataset_id": "GDS5306", "description": "matched specimen BT40", "sample_id": [ "GSM1071899" ], "type": "other", "id": "GDS5306_80" } ], "taxid": "9606", "genes": 32392, "aggregation_function": "mean", "name": "GDS5306", "version": 1.0, "instances": "38", "variables": 32397, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5306.tab", "compression": "gz" } ], [ [ "GDS5307.tab" ], { "title": "Antidepressant fluoxetine effect on depression model: dorsal dentate gyrus", "description": "Analysis of dorsal dentate gyrus from adults subjected to chronic corticosterone (CORT) to induce depression-like behaviors, followed by combined treatment of CORT and selective serotonin reuptake inhibitor fluoxetine. Results provide insight into the molecular basis of antidepressant resistance.", "type": "Expression profiling by array", "pubmed_id": "24465494", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE43261", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5307", "description": "fluoxetine", "sample_id": [ "GSM1059577", "GSM1059578", "GSM1059579", "GSM1059580", "GSM1059581", "GSM1059582", "GSM1059583", "GSM1059591", "GSM1059592", "GSM1059593", "GSM1059594" ], "type": "agent", "id": "GDS5307_1" }, { "dataset_id": "GDS5307", "description": "control", "sample_id": [ "GSM1059561", "GSM1059562", "GSM1059563", "GSM1059564", "GSM1059565", "GSM1059566", "GSM1059567", "GSM1059568" ], "type": "agent", "id": "GDS5307_2" }, { "dataset_id": "GDS5307", "description": "antidepressant resistant", "sample_id": [ "GSM1059591", "GSM1059592", "GSM1059593", "GSM1059594" ], "type": "individual", "id": "GDS5307_3" }, { "dataset_id": "GDS5307", "description": "antidepressant responsive", "sample_id": [ "GSM1059577", "GSM1059578", "GSM1059579", "GSM1059580", "GSM1059581", "GSM1059582", "GSM1059583" ], "type": "individual", "id": "GDS5307_4" }, { "dataset_id": "GDS5307", "description": "control", "sample_id": [ "GSM1059561", "GSM1059562", "GSM1059563", "GSM1059564", "GSM1059565", "GSM1059566", "GSM1059567", "GSM1059568" ], "type": "individual", "id": "GDS5307_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5307", "version": 1.0, "instances": "19", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5307.tab", "compression": "gz" } ], [ [ "GDS5308.tab" ], { "title": "Antidepressant fluoxetine effect on depression model: ventral dentate gyrus", "description": "Analysis of ventral dentate gyrus from adults subjected to chronic corticosterone (CORT) to induce depression-like behaviors, followed by combined treatment of CORT and selective serotonin reuptake inhibitor fluoxetine. Results provide insight into the molecular basis of antidepressant resistance.", "type": "Expression profiling by array", "pubmed_id": "24465494", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE43261", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5308", "description": "fluoxetine", "sample_id": [ "GSM1059595", "GSM1059596", "GSM1059597", "GSM1059598", "GSM1059588", "GSM1059589", "GSM1059584", "GSM1059585", "GSM1059586", "GSM1059587", "GSM1059590" ], "type": "agent", "id": "GDS5308_1" }, { "dataset_id": "GDS5308", "description": "control", "sample_id": [ "GSM1059569", "GSM1059570", "GSM1059571", "GSM1059572", "GSM1059573", "GSM1059574", "GSM1059575", "GSM1059576" ], "type": "agent", "id": "GDS5308_2" }, { "dataset_id": "GDS5308", "description": "antidepressant resistant", "sample_id": [ "GSM1059595", "GSM1059596", "GSM1059597", "GSM1059598" ], "type": "individual", "id": "GDS5308_3" }, { "dataset_id": "GDS5308", "description": "antidepressant responsive", "sample_id": [ "GSM1059588", "GSM1059589", "GSM1059584", "GSM1059585", "GSM1059586", "GSM1059587", "GSM1059590" ], "type": "individual", "id": "GDS5308_4" }, { "dataset_id": "GDS5308", "description": "control", "sample_id": [ "GSM1059569", "GSM1059570", "GSM1059571", "GSM1059572", "GSM1059573", "GSM1059574", "GSM1059575", "GSM1059576" ], "type": "individual", "id": "GDS5308_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5308", "version": 1.0, "instances": "19", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5308.tab", "compression": "gz" } ], [ [ "GDS5309.tab" ], { "title": "Sotrastaurin effect on mantle cell lymphoma cell lines", "description": "Analysis of various mantle cell lymphoma (MCL) lines treated with sotrastaurin (STN). Jeko-1 and Mino are STN-sensitive cell lines; Z-138 and Maver-1 are STN-insensitive cell lines. STN is a pan-protein kinase C (PKC) inhibitor. Results provide insight into the molecular response to PKC inhibition.", "type": "Expression profiling by array", "pubmed_id": "24362935", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE42549", "order": "none", "update_date": "Feb 24 2015", "subsets": [ { "dataset_id": "GDS5309", "description": "Jeko-1", "sample_id": [ "GSM1044966", "GSM1044967", "GSM1044968", "GSM1044969" ], "type": "cell line", "id": "GDS5309_1" }, { "dataset_id": "GDS5309", "description": "Mino", "sample_id": [ "GSM1044970", "GSM1044971", "GSM1044972", "GSM1044973" ], "type": "cell line", "id": "GDS5309_2" }, { "dataset_id": "GDS5309", "description": "Z138", "sample_id": [ "GSM1044974", "GSM1044975", "GSM1044976", "GSM1044977" ], "type": "cell line", "id": "GDS5309_3" }, { "dataset_id": "GDS5309", "description": "Maver-1", "sample_id": [ "GSM1044978", "GSM1044979", "GSM1044980", "GSM1044981" ], "type": "cell line", "id": "GDS5309_4" }, { "dataset_id": "GDS5309", "description": "sotrastaurin", "sample_id": [ "GSM1044977", "GSM1044975", "GSM1044973", "GSM1044971", "GSM1044981", "GSM1044979", "GSM1044969", "GSM1044967" ], "type": "agent", "id": "GDS5309_5" }, { "dataset_id": "GDS5309", "description": "control", "sample_id": [ "GSM1044976", "GSM1044974", "GSM1044972", "GSM1044970", "GSM1044980", "GSM1044978", "GSM1044968", "GSM1044966" ], "type": "agent", "id": "GDS5309_6" }, { "dataset_id": "GDS5309", "description": "sotrastaurin-sensitive", "sample_id": [ "GSM1044967", "GSM1044969", "GSM1044966", "GSM1044968", "GSM1044971", "GSM1044973", "GSM1044970", "GSM1044972" ], "type": "other", "id": "GDS5309_7" }, { "dataset_id": "GDS5309", "description": "sotrastaurin-insensitive", "sample_id": [ "GSM1044975", "GSM1044977", "GSM1044974", "GSM1044976", "GSM1044979", "GSM1044981", "GSM1044978", "GSM1044980" ], "type": "other", "id": "GDS5309_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5309", "version": 1.0, "instances": "16", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5309.tab", "compression": "gz" } ], [ [ "GDS531.tab" ], { "title": "Multiple myeloma and bone lesions", "description": "Comparison of gene expression in bone marrow plasma cells of multiple myeloma patients with and without bone lesions. Osteolytic lesions increase in multiple myeloma patients.", "type": "Expression profiling by array", "pubmed_id": "14695408", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "173", "value_type": "count", "reference_series": "GSE755", "order": "none", "update_date": "Mar 29 2004", "subsets": [ { "dataset_id": "GDS531", "description": "without bone lytic lesion", "sample_id": [ "GSM11437", "GSM11438", "GSM11439", "GSM11440", "GSM11441", "GSM11442", "GSM11443", "GSM11444", "GSM11445", "GSM11446", "GSM11447", "GSM11448", "GSM11449", "GSM11450", "GSM11451", "GSM11452", "GSM11453", "GSM11454", "GSM11455", "GSM11456", "GSM11457", "GSM11458", "GSM11459", "GSM11460", "GSM11461", "GSM11462", "GSM11463", "GSM11464", "GSM11465", "GSM11466", "GSM11467", "GSM11468", "GSM11469", "GSM11470", "GSM11471", "GSM11472" ], "type": "disease state", "id": "GDS531_1" }, { "dataset_id": "GDS531", "description": "with bone lytic lesion", "sample_id": [ "GSM11473", "GSM11474", "GSM11475", "GSM11476", "GSM11477", "GSM11478", "GSM11479", "GSM11480", "GSM11481", "GSM11482", "GSM11483", "GSM11484", "GSM11485", "GSM11486", "GSM11487", "GSM11488", "GSM11489", "GSM11490", "GSM11491", "GSM11492", "GSM11493", "GSM11494", "GSM11495", "GSM11496", "GSM11497", "GSM11498", "GSM11499", "GSM11500", "GSM11501", "GSM11502", "GSM11503", "GSM11504", "GSM11505", "GSM11506", "GSM11507", "GSM11508", "GSM11509", "GSM11510", "GSM11511", "GSM11512", "GSM11513", "GSM11514", "GSM11515", "GSM11516", "GSM11517", "GSM11518", "GSM11519", "GSM11520", "GSM11521", "GSM11522", "GSM11523", "GSM11524", "GSM11525", "GSM11526", "GSM11527", "GSM11528", "GSM11529", "GSM11530", "GSM11531", "GSM11532", "GSM11533", "GSM11534", "GSM11535", "GSM11536", "GSM11537", "GSM11538", "GSM11539", "GSM11540", "GSM11541", "GSM11542", "GSM11543", "GSM11544", "GSM11545", "GSM11546", "GSM11547", "GSM11548", "GSM11549", "GSM11550", "GSM11551", "GSM11552", "GSM11553", "GSM11554", "GSM11555", "GSM11556", "GSM11557", "GSM11558", "GSM11559", "GSM11560", "GSM11561", "GSM11562", "GSM11563", "GSM11564", "GSM11565", "GSM11566", "GSM11567", "GSM11568", "GSM11569", "GSM11570", "GSM11571", "GSM11572", "GSM11573", "GSM11574", "GSM11575", "GSM11576", "GSM11577", "GSM11578", "GSM11579", "GSM11580", "GSM11581", "GSM11582", "GSM11583", "GSM11584", "GSM11585", "GSM11586", "GSM11587", "GSM11588", "GSM11589", "GSM11590", "GSM11591", "GSM11592", "GSM11593", "GSM11594", "GSM11595", "GSM11596", "GSM11597", "GSM11598", "GSM11599", "GSM11600", "GSM11601", "GSM11602", "GSM11603", "GSM11604", "GSM11605", "GSM11606", "GSM11607", "GSM11608", "GSM11609" ], "type": "disease state", "id": "GDS531_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS531", "version": 1.0, "instances": "173", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS531.tab", "compression": "gz" } ], [ [ "GDS5310.tab" ], { "title": "Matrigel 3D culture model of JIMT1 breast cancer cells", "description": "Temporal analysis of JIMT1 breast cancer cells cultured as xenografts, in two dimensional cultures, in polyHEMA three dimensional cell cultures, and in Matrigel three dimensional cell cultures. Results provide insight into how closely the Matrigel 3D cell culture model mimics in vivo tumors.", "type": "Expression profiling by array", "pubmed_id": "24194875", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE42529", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5310", "description": "2 dimensional monolayer", "sample_id": [ "GSM1044262", "GSM1044268" ], "type": "growth protocol", "id": "GDS5310_1" }, { "dataset_id": "GDS5310", "description": "3 dimensional Matrigel", "sample_id": [ "GSM1044263", "GSM1044269", "GSM1044264", "GSM1044270" ], "type": "growth protocol", "id": "GDS5310_2" }, { "dataset_id": "GDS5310", "description": "3 dimensional polyHEMA", "sample_id": [ "GSM1044265", "GSM1044271", "GSM1044266", "GSM1044272" ], "type": "growth protocol", "id": "GDS5310_3" }, { "dataset_id": "GDS5310", "description": "xenograph (mammary fat pad)", "sample_id": [ "GSM1044267", "GSM1044273" ], "type": "growth protocol", "id": "GDS5310_4" }, { "dataset_id": "GDS5310", "description": "day 4", "sample_id": [ "GSM1044263", "GSM1044269", "GSM1044265", "GSM1044271" ], "type": "time", "id": "GDS5310_5" }, { "dataset_id": "GDS5310", "description": "day 7", "sample_id": [ "GSM1044262", "GSM1044268", "GSM1044264", "GSM1044270", "GSM1044266", "GSM1044272" ], "type": "time", "id": "GDS5310_6" }, { "dataset_id": "GDS5310", "description": "day 43", "sample_id": [ "GSM1044267", "GSM1044273" ], "type": "time", "id": "GDS5310_7" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5310", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5310.tab", "compression": "gz" } ], [ [ "GDS5311.tab" ], { "title": "Lipopolysaccharide effect on fatty acid-loaded peritoneal macrophages in vitro", "description": "Analysis of fatty acid (FA)-loaded macrophages stimulated with bacterial lipopolysaccharide (LPS). LPS is a Toll-like receptor 4 (TLR4) agonist. Results provide insight into the molecular mechanisms that promote triglyceride retention in LPS-exposed macrophages.", "type": "Expression profiling by array", "pubmed_id": "24337578", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE42190", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5311", "description": "LPS only", "sample_id": [ "GSM1034576", "GSM1034583", "GSM1034579", "GSM1034573" ], "type": "protocol", "id": "GDS5311_1" }, { "dataset_id": "GDS5311", "description": "fatty acid only", "sample_id": [ "GSM1034575", "GSM1034582", "GSM1034578", "GSM1034572" ], "type": "protocol", "id": "GDS5311_2" }, { "dataset_id": "GDS5311", "description": "fatty acid + LPS", "sample_id": [ "GSM1034577", "GSM1034584", "GSM1034580", "GSM1034574" ], "type": "protocol", "id": "GDS5311_3" }, { "dataset_id": "GDS5311", "description": "unstimulated", "sample_id": [ "GSM1034585", "GSM1034581", "GSM1034571" ], "type": "protocol", "id": "GDS5311_4" }, { "dataset_id": "GDS5311", "description": "experiment 1", "sample_id": [ "GSM1034571", "GSM1034572", "GSM1034573", "GSM1034574" ], "type": "other", "id": "GDS5311_5" }, { "dataset_id": "GDS5311", "description": "experiment 2", "sample_id": [ "GSM1034578", "GSM1034579", "GSM1034580" ], "type": "other", "id": "GDS5311_6" }, { "dataset_id": "GDS5311", "description": "experiment 3", "sample_id": [ "GSM1034581", "GSM1034582", "GSM1034583", "GSM1034584" ], "type": "other", "id": "GDS5311_7" }, { "dataset_id": "GDS5311", "description": "experiment 4", "sample_id": [ "GSM1034575", "GSM1034576", "GSM1034577", "GSM1034585" ], "type": "other", "id": "GDS5311_8" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5311", "version": 1.0, "instances": "15", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5311.tab", "compression": "gz" } ], [ [ "GDS5314.tab" ], { "title": "Placental CD14+ macrophage-derived multinucleated giant cells", "description": "Analysis of placental multinucleated giant cells (MGCs) obtained from at-term placental CD14+ macrophages cultured in DMEM-F12 containing 10% FCS and antibiotics for 9 days. Results provide insight into molecular mechanisms underlying the maturation of macrophages into MGCs.", "type": "Expression profiling by array", "pubmed_id": "24163411", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE38747", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5314", "description": "placental CD14+ macrophage", "sample_id": [ "GSM948995", "GSM948994", "GSM948991", "GSM948987", "GSM948993", "GSM948990" ], "type": "cell type", "id": "GDS5314_1" }, { "dataset_id": "GDS5314", "description": "multinucleated giant cells", "sample_id": [ "GSM948996", "GSM948989", "GSM948988", "GSM948997", "GSM948992", "GSM948986" ], "type": "cell type", "id": "GDS5314_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5314", "version": 1.0, "instances": "12", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5314.tab", "compression": "gz" } ], [ [ "GDS5315.tab" ], { "title": "Linezolid and vancomycin effect on whole blood of methicillin-resistant Staphylococcus aureus (MRSA) sepsis model: time course", "description": "Analysis of blood from A/J males injected with S. aureus USA300 then treated intravenously with linezolid (L) or vancomycin (V) for up to 24hr. L and V represent two different classes of antibiotics. Results provide insight into the molecular effects of each antibiotic on the host in MRSA sepsis.", "type": "Expression profiling by array", "pubmed_id": "23565251", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "35", "value_type": "transformed count", "reference_series": "GSE38531", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5315", "description": "uninfected", "sample_id": [ "GSM944833", "GSM944840", "GSM944847", "GSM944854", "GSM944861", "GSM944834", "GSM944841", "GSM944848", "GSM944855", "GSM944862", "GSM944831", "GSM944838", "GSM944845", "GSM944852", "GSM944859" ], "type": "infection", "id": "GDS5315_1" }, { "dataset_id": "GDS5315", "description": "S. aureus USA300", "sample_id": [ "GSM944835", "GSM944842", "GSM944849", "GSM944856", "GSM944863", "GSM944836", "GSM944843", "GSM944850", "GSM944857", "GSM944864", "GSM944837", "GSM944844", "GSM944851", "GSM944858", "GSM944865", "GSM944832", "GSM944839", "GSM944846", "GSM944853", "GSM944860" ], "type": "infection", "id": "GDS5315_2" }, { "dataset_id": "GDS5315", "description": "hour 0", "sample_id": [ "GSM944833", "GSM944840", "GSM944847", "GSM944854", "GSM944861", "GSM944834", "GSM944841", "GSM944848", "GSM944855", "GSM944862", "GSM944831", "GSM944838", "GSM944845", "GSM944852", "GSM944859" ], "type": "time", "id": "GDS5315_3" }, { "dataset_id": "GDS5315", "description": "hour 2", "sample_id": [ "GSM944832", "GSM944839", "GSM944846", "GSM944853", "GSM944860" ], "type": "time", "id": "GDS5315_4" }, { "dataset_id": "GDS5315", "description": "hour 24", "sample_id": [ "GSM944835", "GSM944842", "GSM944849", "GSM944856", "GSM944863", "GSM944836", "GSM944843", "GSM944850", "GSM944857", "GSM944864", "GSM944837", "GSM944844", "GSM944851", "GSM944858", "GSM944865" ], "type": "time", "id": "GDS5315_5" }, { "dataset_id": "GDS5315", "description": "untreated", "sample_id": [ "GSM944835", "GSM944842", "GSM944849", "GSM944856", "GSM944863", "GSM944832", "GSM944839", "GSM944846", "GSM944853", "GSM944860", "GSM944831", "GSM944838", "GSM944845", "GSM944852", "GSM944859" ], "type": "agent", "id": "GDS5315_6" }, { "dataset_id": "GDS5315", "description": "linezolid", "sample_id": [ "GSM944836", "GSM944843", "GSM944850", "GSM944857", "GSM944864", "GSM944833", "GSM944840", "GSM944847", "GSM944854", "GSM944861" ], "type": "agent", "id": "GDS5315_7" }, { "dataset_id": "GDS5315", "description": "vancomycin", "sample_id": [ "GSM944837", "GSM944844", "GSM944851", "GSM944858", "GSM944865", "GSM944834", "GSM944841", "GSM944848", "GSM944855", "GSM944862" ], "type": "agent", "id": "GDS5315_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5315", "version": 1.0, "instances": "35", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5315.tab", "compression": "gz" } ], [ [ "GDS5316.tab" ], { "title": "Embryonic fibroblast response to ectopic expression of transcription factors Oct4, Sox2, Klf4, c-Myc: time course", "description": "Analysis of embryonic fibroblasts (MEFs) infected with retroviruses encoding four transcription factors (Oct4, Sox2, Klf4 and c-Myc) and sampled at day 1, 2, 3, 4, 5, 6 and 8. Results provide insight into molecular mechanisms underlying the reprogramming of MEFs into induced pluripotent stem cells.", "type": "Expression profiling by array", "pubmed_id": "24496101", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "transformed count", "reference_series": "GSE38509", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5316", "description": "retrovirus encoding GFP", "sample_id": [ "GSM943810", "GSM943811", "GSM943812", "GSM943813", "GSM943814", "GSM943815", "GSM943816", "GSM943817" ], "type": "infection", "id": "GDS5316_1" }, { "dataset_id": "GDS5316", "description": "retroviruses encoding the four transcription factors", "sample_id": [ "GSM943794", "GSM943795", "GSM943796", "GSM943797", "GSM943798", "GSM943799", "GSM943800", "GSM943801", "GSM943802", "GSM943803", "GSM943804", "GSM943805", "GSM943806", "GSM943807", "GSM943808", "GSM943809" ], "type": "infection", "id": "GDS5316_2" }, { "dataset_id": "GDS5316", "description": "day 0", "sample_id": [ "GSM943794", "GSM943795" ], "type": "time", "id": "GDS5316_3" }, { "dataset_id": "GDS5316", "description": "day 1", "sample_id": [ "GSM943796", "GSM943797", "GSM943810", "GSM943811" ], "type": "time", "id": "GDS5316_4" }, { "dataset_id": "GDS5316", "description": "day 2", "sample_id": [ "GSM943798", "GSM943799" ], "type": "time", "id": "GDS5316_5" }, { "dataset_id": "GDS5316", "description": "day 3", "sample_id": [ "GSM943800", "GSM943801", "GSM943812", "GSM943813" ], "type": "time", "id": "GDS5316_6" }, { "dataset_id": "GDS5316", "description": "day 4", "sample_id": [ "GSM943802", "GSM943803" ], "type": "time", "id": "GDS5316_7" }, { "dataset_id": "GDS5316", "description": "day 5", "sample_id": [ "GSM943804", "GSM943805", "GSM943814", "GSM943815" ], "type": "time", "id": "GDS5316_8" }, { "dataset_id": "GDS5316", "description": "day 6", "sample_id": [ "GSM943806", "GSM943807" ], "type": "time", "id": "GDS5316_9" }, { "dataset_id": "GDS5316", "description": "day 8", "sample_id": [ "GSM943808", "GSM943809", "GSM943816", "GSM943817" ], "type": "time", "id": "GDS5316_10" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5316", "version": 1.0, "instances": "24", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5316.tab", "compression": "gz" } ], [ [ "GDS5317.tab" ], { "title": "Drug efflux transporter ABCB5 knockdown effect on A375 melanoma cells", "description": "Analysis of nonpigmented melanoma A375 cell line following ABCB5 ablation. ABCB5 [ATP-binding cassette, subfamily B (MDR/TAP), member 5] is a drug efflux transporter shown to be highly overexpressed in diverse human cancers. Results provide insight into the role of ABCB5 in melanoma.", "type": "Expression profiling by array", "pubmed_id": "24934811", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE38290", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5317", "description": "shRNA ABCB5 knockdown", "sample_id": [ "GSM938056", "GSM938057", "GSM938058" ], "type": "protocol", "id": "GDS5317_1" }, { "dataset_id": "GDS5317", "description": "control", "sample_id": [ "GSM938053", "GSM938054", "GSM938055" ], "type": "protocol", "id": "GDS5317_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5317", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5317.tab", "compression": "gz" } ], [ [ "GDS5318.tab" ], { "title": "Drug efflux transporter ABCB5 knockdown effect on G3361 melanoma cells", "description": "Analysis of pigmented melanoma G3361 cell line following ABCB5 ablation. ABCB5 [ATP-binding cassette, subfamily B (MDR/TAP), member 5] is a drug efflux transporter shown to be highly overexpressed in diverse human cancers. Results provide insight into the role of ABCB5 in melanoma.", "type": "Expression profiling by array", "pubmed_id": "24934811", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE38290", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5318", "description": "shRNA ABCB5 knockdown", "sample_id": [ "GSM938062", "GSM938063", "GSM938064" ], "type": "protocol", "id": "GDS5318_1" }, { "dataset_id": "GDS5318", "description": "control", "sample_id": [ "GSM938059", "GSM938060", "GSM938061" ], "type": "protocol", "id": "GDS5318_2" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5318", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5318.tab", "compression": "gz" } ], [ [ "GDS5319.tab" ], { "title": "Lysine-specific demethylase 1 deficiency effect on developing trophoblast stem cells: time course", "description": "Analysis of lysine-specific demethylase 1 (Lsd1)-deficient trophoblast stem cells (TSCs) up to 4 days after the induction of differentiation. Lsd1 is an epigenetic regulator. Results provide insight into the role of Lsd1 in TCS differentiation.", "type": "Expression profiling by array", "pubmed_id": "24448552", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE38277", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5319", "description": "Lsd1 deficient", "sample_id": [ "GSM937917", "GSM937918", "GSM937919", "GSM937923", "GSM937924", "GSM937925", "GSM937929", "GSM937930", "GSM937931" ], "type": "genotype/variation", "id": "GDS5319_1" }, { "dataset_id": "GDS5319", "description": "wild type", "sample_id": [ "GSM937914", "GSM937915", "GSM937916", "GSM937920", "GSM937921", "GSM937922", "GSM937926", "GSM937927", "GSM937928" ], "type": "genotype/variation", "id": "GDS5319_2" }, { "dataset_id": "GDS5319", "description": "control", "sample_id": [ "GSM937919", "GSM937918", "GSM937917", "GSM937916", "GSM937915", "GSM937914" ], "type": "protocol", "id": "GDS5319_3" }, { "dataset_id": "GDS5319", "description": "induction of differentiation", "sample_id": [ "GSM937925", "GSM937924", "GSM937923", "GSM937922", "GSM937921", "GSM937920", "GSM937931", "GSM937930", "GSM937929", "GSM937928", "GSM937927", "GSM937926" ], "type": "protocol", "id": "GDS5319_4" }, { "dataset_id": "GDS5319", "description": "0 day", "sample_id": [ "GSM937919", "GSM937918", "GSM937917", "GSM937916", "GSM937915", "GSM937914" ], "type": "time", "id": "GDS5319_5" }, { "dataset_id": "GDS5319", "description": "2 day", "sample_id": [ "GSM937925", "GSM937924", "GSM937923", "GSM937922", "GSM937921", "GSM937920" ], "type": "time", "id": "GDS5319_6" }, { "dataset_id": "GDS5319", "description": "4 day", "sample_id": [ "GSM937931", "GSM937930", "GSM937929", "GSM937928", "GSM937927", "GSM937926" ], "type": "time", "id": "GDS5319_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5319", "version": 1.0, "instances": "18", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5319.tab", "compression": "gz" } ], [ [ "GDS532.tab" ], { "title": "Hydrostatic pressure-responsive genes in optic nerve head astrocytes", "description": "Temporal analysis of how astrocytes in the optic nerve head (ONH) respond to changes in intraocular pressure (IOP). ONH astrocytes exposed to 60 mm Hg hydrostatic pressure for 6, 24, and 48 hours. Lends understanding to pathogenesis of glaucoma.", "type": "Expression profiling by array", "pubmed_id": [ "14747662", "18822132" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE758", "order": "none", "update_date": "Mar 29 2004", "subsets": [ { "dataset_id": "GDS532", "description": "60 mm Hg hydrostatic pressure", "sample_id": [ "GSM11387", "GSM11388", "GSM11389", "GSM11390", "GSM11391", "GSM11392", "GSM11393", "GSM11402", "GSM11403", "GSM11405", "GSM11407", "GSM11409", "GSM11411", "GSM11413", "GSM11415", "GSM11422", "GSM11423", "GSM11424", "GSM11425", "GSM11426" ], "type": "protocol", "id": "GDS532_1" }, { "dataset_id": "GDS532", "description": "ambient pressure", "sample_id": [ "GSM11350", "GSM11351", "GSM11366", "GSM11369", "GSM11372", "GSM11377", "GSM11378", "GSM11382", "GSM11384", "GSM11385", "GSM11386", "GSM11394", "GSM11395", "GSM11396", "GSM11397", "GSM11398", "GSM11399", "GSM11400", "GSM11401", "GSM11416", "GSM11417", "GSM11418", "GSM11419", "GSM11420" ], "type": "protocol", "id": "GDS532_2" }, { "dataset_id": "GDS532", "description": "0", "sample_id": [ "GSM11350", "GSM11351", "GSM11366", "GSM11369", "GSM11372", "GSM11377", "GSM11378" ], "type": "time", "id": "GDS532_3" }, { "dataset_id": "GDS532", "description": "6 h", "sample_id": [ "GSM11382", "GSM11384", "GSM11385", "GSM11386", "GSM11387", "GSM11388", "GSM11389", "GSM11390", "GSM11391", "GSM11392", "GSM11393" ], "type": "time", "id": "GDS532_4" }, { "dataset_id": "GDS532", "description": "24 h", "sample_id": [ "GSM11394", "GSM11395", "GSM11396", "GSM11397", "GSM11398", "GSM11399", "GSM11400", "GSM11401", "GSM11402", "GSM11403", "GSM11405", "GSM11407", "GSM11409", "GSM11411", "GSM11413", "GSM11415" ], "type": "time", "id": "GDS532_5" }, { "dataset_id": "GDS532", "description": "48 h", "sample_id": [ "GSM11416", "GSM11417", "GSM11418", "GSM11419", "GSM11420", "GSM11422", "GSM11423", "GSM11424", "GSM11425", "GSM11426" ], "type": "time", "id": "GDS532_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS532", "version": 1.0, "instances": "44", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS532.tab", "compression": "gz" } ], [ [ "GDS5320.tab" ], { "title": "Platelet-derived growth factor C transgenic model of hepatocellular carcinoma: liver stromal cells", "description": "Analysis of liver stroma from 8.8-week-old PDGF-C transgenics wherein PDGF-C is ectopically expressed in hepatocytes. The transgenics develop progressive liver fibrosis with a high incidence of HCC. Results provide insight into PDGF-C-driven molecular changes in liver stroma contributing to HCC.", "type": "Expression profiling by array", "pubmed_id": [ "23929039", "26632601" ], "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE38199", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5320", "description": "Pdgf-c transgenic", "sample_id": [ "GSM936490", "GSM936491", "GSM936494", "GSM936497", "GSM936501", "GSM936503", "GSM936504" ], "type": "genotype/variation", "id": "GDS5320_1" }, { "dataset_id": "GDS5320", "description": "wild type", "sample_id": [ "GSM936492", "GSM936493", "GSM936495", "GSM936496", "GSM936498", "GSM936499", "GSM936500", "GSM936502", "GSM936505" ], "type": "genotype/variation", "id": "GDS5320_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5320", "version": 1.0, "instances": "16", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5320.tab", "compression": "gz" } ], [ [ "GDS5321.tab" ], { "title": "Normal ovarian and fallopian tube epithelial cells immortalized with hTERT", "description": "Analysis of paired normal hTERT-immortalized ovarian (OCE) and fallopian tube (FNE) epithelial cell lines derived from two cancer-free donors. Results provide insight into gene signatures distinguishing the two cell types that could potentially identify the cell-of-origin of ovarian tumors.", "type": "Expression profiling by array", "pubmed_id": "24303006", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE37648", "order": "none", "update_date": "May 05 2015", "subsets": [ { "dataset_id": "GDS5321", "description": "patient 1", "sample_id": [ "GSM925038", "GSM925039", "GSM925040", "GSM925035", "GSM925036", "GSM925037" ], "type": "individual", "id": "GDS5321_1" }, { "dataset_id": "GDS5321", "description": "patient 2", "sample_id": [ "GSM925044", "GSM925045", "GSM925046", "GSM925041", "GSM925042", "GSM925043" ], "type": "individual", "id": "GDS5321_2" }, { "dataset_id": "GDS5321", "description": "ovarian epithelium, hTERT-immortalized", "sample_id": [ "GSM925041", "GSM925042", "GSM925043", "GSM925035", "GSM925036", "GSM925037" ], "type": "cell line", "id": "GDS5321_3" }, { "dataset_id": "GDS5321", "description": "fallopian tube epithelium, hTERT-immortalized", "sample_id": [ "GSM925038", "GSM925039", "GSM925040", "GSM925044", "GSM925045", "GSM925046" ], "type": "cell line", "id": "GDS5321_4" }, { "dataset_id": "GDS5321", "description": "passage 1", "sample_id": [ "GSM925035", "GSM925041", "GSM925044" ], "type": "other", "id": "GDS5321_5" }, { "dataset_id": "GDS5321", "description": "passage 2", "sample_id": [ "GSM925036", "GSM925038", "GSM925042", "GSM925045" ], "type": "other", "id": "GDS5321_6" }, { "dataset_id": "GDS5321", "description": "passage 3", "sample_id": [ "GSM925037", "GSM925039", "GSM925043", "GSM925046" ], "type": "other", "id": "GDS5321_7" }, { "dataset_id": "GDS5321", "description": "passage 4", "sample_id": [ "GSM925040" ], "type": "other", "id": "GDS5321_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5321", "version": 1.0, "instances": "12", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5321.tab", "compression": "gz" } ], [ [ "GDS5323.tab" ], { "title": "CREB-Binding Protein Inhibitor ICG-001 effect on pancreatic cancer cell line: time course", "description": "Analysis of AsPC1 pancreatic adenocarcinoma (PDAC) cells treated with IGC-001 up to 24 hours. IGC-001 binds to CREB-binding protein to disrupt its interaction with \u03b2-catenin. Results compared to \u03b2-catenin depletion (GDS5324) and provide insight into the therapeutic potential of IGC-001 in PDAC.", "type": "Expression profiling by array", "pubmed_id": "25082960", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE57728", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5323", "description": "control", "sample_id": [ "GSM1387694", "GSM1387695", "GSM1387696", "GSM1387697", "GSM1387698", "GSM1387699" ], "type": "agent", "id": "GDS5323_1" }, { "dataset_id": "GDS5323", "description": "ICG-001", "sample_id": [ "GSM1387688", "GSM1387689", "GSM1387690", "GSM1387691", "GSM1387692", "GSM1387693" ], "type": "agent", "id": "GDS5323_2" }, { "dataset_id": "GDS5323", "description": "6 h", "sample_id": [ "GSM1387688", "GSM1387689", "GSM1387690", "GSM1387694", "GSM1387695", "GSM1387696" ], "type": "time", "id": "GDS5323_3" }, { "dataset_id": "GDS5323", "description": "24 h", "sample_id": [ "GSM1387691", "GSM1387692", "GSM1387693", "GSM1387697", "GSM1387698", "GSM1387699" ], "type": "time", "id": "GDS5323_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5323", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5323.tab", "compression": "gz" } ], [ [ "GDS5324.tab" ], { "title": "Beta-catenin depletion effect on pancreatic cancer cell line", "description": "Analysis of AsPc1 pancreatic adenocarcinoma cells depleted for beta-catenin. Dysregulation of Wnt/\u03b2-catenin signaling is implicated in the pathogenesis of cancers. Results compared to those from AsPC1 cells treated with the CREB-binding protein inhibitor ICG-001 (GDS5323).", "type": "Expression profiling by array", "pubmed_id": "25082960", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE57728", "order": "none", "update_date": "Feb 25 2015", "subsets": [ { "dataset_id": "GDS5324", "description": "beta-catenin depletion", "sample_id": [ "GSM1387702", "GSM1387703" ], "type": "protocol", "id": "GDS5324_1" }, { "dataset_id": "GDS5324", "description": "control", "sample_id": [ "GSM1387700", "GSM1387701" ], "type": "protocol", "id": "GDS5324_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5324", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5324.tab", "compression": "gz" } ], [ [ "GDS5325.tab" ], { "title": "TRPM7 deficiency effect on embryonic stem cells", "description": "Analysis of embryonic stem cells from mutants lacking TRPM7. TRPM7 is a kinase and an ion channel. Results provide insight into the function of TRPM7 in cell differentiation and embryonic development.", "type": "Expression profiling by array", "pubmed_id": "24855944", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE55578", "order": "none", "update_date": "Oct 20 2014", "subsets": [ { "dataset_id": "GDS5325", "description": "TRPM7 null", "sample_id": [ "GSM1339553", "GSM1339554", "GSM1339555" ], "type": "genotype/variation", "id": "GDS5325_1" }, { "dataset_id": "GDS5325", "description": "wild type", "sample_id": [ "GSM1339556", "GSM1339557", "GSM1339558" ], "type": "genotype/variation", "id": "GDS5325_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5325", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5325.tab", "compression": "gz" } ], [ [ "GDS533.tab" ], { "title": "Uterine smooth muscle tumor characterization", "description": "Comparison of gene expression in uterine smooth muscle tumors. Normal myometrium, benign uterine leiomyoma, malignant uterine and extra-uterine leiomyosarcoma examined.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE764", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS533", "description": "normal myometrium", "sample_id": [ "GSM11625", "GSM11757", "GSM11758", "GSM11759" ], "type": "tissue", "id": "GDS533_1" }, { "dataset_id": "GDS533", "description": "uterine leiomyoma", "sample_id": [ "GSM11761", "GSM11762", "GSM11763", "GSM11764", "GSM11765", "GSM11766", "GSM11767" ], "type": "tissue", "id": "GDS533_2" }, { "dataset_id": "GDS533", "description": "uterine leiomyosarcoma", "sample_id": [ "GSM11760", "GSM11768", "GSM11769", "GSM11770", "GSM11771", "GSM11772", "GSM11773", "GSM11774", "GSM11775" ], "type": "tissue", "id": "GDS533_3" }, { "dataset_id": "GDS533", "description": "extra-uterine leiomyosarcoma", "sample_id": [ "GSM11776", "GSM11777", "GSM11778", "GSM11779" ], "type": "tissue", "id": "GDS533_4" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS533", "version": 1.0, "instances": "24", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS533.tab", "compression": "gz" } ], [ [ "GDS5332.tab" ], { "title": "Death receptor knockout effect on NEMO-deficient model of chronic liver disease", "description": "Analysis of livers from hepatocyte-specific NF-\u0138B essential modulator (NEMO), NEMO-TRIAL, and NEMO-TNFR null males. NEMO deletion in hepatocytes causes spontaneous hepatocyte apoptosis. TNFR1 and TRAIL encode death receptors. Results provide insight into the role of death receptors in liver injury.", "type": "Expression profiling by array", "pubmed_id": "23933814", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE33161", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5332", "description": "wild type", "sample_id": [ "GSM821097", "GSM821098", "GSM821099" ], "type": "genotype/variation", "id": "GDS5332_1" }, { "dataset_id": "GDS5332", "description": "NEMO knockout", "sample_id": [ "GSM821100", "GSM821101", "GSM821102" ], "type": "genotype/variation", "id": "GDS5332_2" }, { "dataset_id": "GDS5332", "description": "NEMO/TRAIL double knockout", "sample_id": [ "GSM821103", "GSM821104" ], "type": "genotype/variation", "id": "GDS5332_3" }, { "dataset_id": "GDS5332", "description": "NEMO/TNFR1 double knockout", "sample_id": [ "GSM821105", "GSM821106", "GSM821107" ], "type": "genotype/variation", "id": "GDS5332_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5332", "version": 1.0, "instances": "11", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5332.tab", "compression": "gz" } ], [ [ "GDS5335.tab" ], { "title": "p38-alpha deficient keratinocyte response to ultraviolet-B in vitro", "description": "Analysis of p38-alpha deficient keratinocytes exposed to ultraviolet-B (UVB) for 4 hours in vitro. p38-alpha is a mitogen-activated protein kinase. Inflammation underlies UVB's various detrimental effects. Results provide insight into the role of p38-alpha in UVB-induced inflammation.", "type": "Expression profiling by array", "pubmed_id": "24662766", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE51206", "order": "none", "update_date": "Oct 22 2014", "subsets": [ { "dataset_id": "GDS5335", "description": "p38-alpha null", "sample_id": [ "GSM1240486", "GSM1240487" ], "type": "genotype/variation", "id": "GDS5335_1" }, { "dataset_id": "GDS5335", "description": "wild type", "sample_id": [ "GSM1240488", "GSM1240489" ], "type": "genotype/variation", "id": "GDS5335_2" }, { "dataset_id": "GDS5335", "description": "UVB", "sample_id": [ "GSM1240487", "GSM1240489" ], "type": "agent", "id": "GDS5335_3" }, { "dataset_id": "GDS5335", "description": "control", "sample_id": [ "GSM1240486", "GSM1240488" ], "type": "agent", "id": "GDS5335_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5335", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5335.tab", "compression": "gz" } ], [ [ "GDS5336.tab" ], { "title": "Anterior stomach vagotomy effect on INS-GAS gastric cancer model stomach: time course", "description": "Analysis of anterior and posterior stomach regions following vagotomy of anterior stomach of 6 month old INS-GAS animals at 2, 4, and 6 months post-surgery. Results provide insight into molecular mechanisms underlying denervation-mediated suppression of gastric tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "25143365", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE30295", "order": "ordered", "update_date": "Nov 26 2014", "subsets": [ { "dataset_id": "GDS5336", "description": "2 months post surgery", "sample_id": [ "GSM750900", "GSM750906", "GSM750912", "GSM750918", "GSM750924", "GSM750899", "GSM750905", "GSM750911", "GSM750917", "GSM750923" ], "type": "time", "id": "GDS5336_1" }, { "dataset_id": "GDS5336", "description": "4 months post surgery", "sample_id": [ "GSM750902", "GSM750908", "GSM750914", "GSM750920", "GSM750926", "GSM750901", "GSM750907", "GSM750913", "GSM750919", "GSM750925" ], "type": "time", "id": "GDS5336_2" }, { "dataset_id": "GDS5336", "description": "6 months post surgery", "sample_id": [ "GSM750904", "GSM750910", "GSM750916", "GSM750922", "GSM750928", "GSM750930", "GSM750903", "GSM750909", "GSM750915", "GSM750921", "GSM750927", "GSM750929" ], "type": "time", "id": "GDS5336_3" }, { "dataset_id": "GDS5336", "description": "unvagotomized posterior stomach", "sample_id": [ "GSM750899", "GSM750905", "GSM750911", "GSM750917", "GSM750923", "GSM750901", "GSM750907", "GSM750913", "GSM750919", "GSM750925", "GSM750903", "GSM750909", "GSM750915", "GSM750921", "GSM750927", "GSM750929" ], "type": "tissue", "id": "GDS5336_4" }, { "dataset_id": "GDS5336", "description": "vagotomized anterior stomach", "sample_id": [ "GSM750900", "GSM750906", "GSM750912", "GSM750918", "GSM750924", "GSM750902", "GSM750908", "GSM750914", "GSM750920", "GSM750926", "GSM750904", "GSM750910", "GSM750916", "GSM750922", "GSM750928", "GSM750930" ], "type": "tissue", "id": "GDS5336_5" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5336", "version": 1.0, "instances": "32", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5336.tab", "compression": "gz" } ], [ [ "GDS5337.tab" ], { "title": "Heat shock protein 90 inhibitor effect on Huntington\u2019s disease model: brain striatum", "description": "Analysis of R6/2 Huntington\u2019s disease (HD) model treated with 12mg/kg HSP990 for 4h. HSP990, a brain-penetrant HSP90 inhibitor, activates heat shock response (HSR) and alters HD-related phenotypes. Results provide insight into molecular mechanisms underlying impaired HSR-mediated HD progression.", "type": "Expression profiling by array", "pubmed_id": "21785217", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "32", "value_type": "transformed count", "reference_series": "GSE29681", "order": "none", "update_date": "Oct 23 2014", "subsets": [ { "dataset_id": "GDS5337", "description": "R6/2 transgenic", "sample_id": [ "GSM736018", "GSM736019", "GSM736020", "GSM736021", "GSM736022", "GSM736023", "GSM736024", "GSM736025", "GSM736026", "GSM736027", "GSM736028", "GSM736029", "GSM736030", "GSM736031", "GSM736032" ], "type": "genotype/variation", "id": "GDS5337_1" }, { "dataset_id": "GDS5337", "description": "wild type", "sample_id": [ "GSM736033", "GSM736034", "GSM736035", "GSM736036", "GSM736037", "GSM736038", "GSM736039", "GSM736040", "GSM736041", "GSM736042", "GSM736043", "GSM736044", "GSM736045", "GSM736046", "GSM736047", "GSM736048", "GSM736049" ], "type": "genotype/variation", "id": "GDS5337_2" }, { "dataset_id": "GDS5337", "description": "vehicle (control) treated", "sample_id": [ "GSM736043", "GSM736044", "GSM736045", "GSM736046", "GSM736047", "GSM736048", "GSM736049", "GSM736026", "GSM736027", "GSM736028", "GSM736029", "GSM736030", "GSM736031", "GSM736032" ], "type": "protocol", "id": "GDS5337_3" }, { "dataset_id": "GDS5337", "description": "HSP990 (12mg/kg) treated", "sample_id": [ "GSM736033", "GSM736034", "GSM736035", "GSM736036", "GSM736037", "GSM736038", "GSM736039", "GSM736040", "GSM736041", "GSM736042", "GSM736018", "GSM736019", "GSM736020", "GSM736021", "GSM736022", "GSM736023", "GSM736024", "GSM736025" ], "type": "protocol", "id": "GDS5337_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5337", "version": 1.0, "instances": "32", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5337.tab", "compression": "gz" } ], [ [ "GDS5338.tab" ], { "title": "Helicobacter pylori infection: antrum stomach biopsies", "description": "Analysis of stomach biopsies of different stages of Helicobacter pylori (HB) infection. Many gastric cancers believed caused by chronic HB infection and atrophic corpus gastritis predisposes to gastric cancer development. Results provide insight into mechanisms underlying atrophic HB infection.", "type": "Expression profiling by array", "pubmed_id": "24119614", "platform": "GPL6255", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "20589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE27411", "order": "none", "update_date": "Nov 25 2014", "subsets": [ { "dataset_id": "GDS5338", "description": "non-infected", "sample_id": [ "GSM677731", "GSM677730", "GSM677746" ], "type": "disease state", "id": "GDS5338_1" }, { "dataset_id": "GDS5338", "description": "Helicobacter pylori infected without atrophy", "sample_id": [ "GSM677735", "GSM677734", "GSM677736" ], "type": "disease state", "id": "GDS5338_2" }, { "dataset_id": "GDS5338", "description": "Helicobacter pylori infected with atrophy", "sample_id": [ "GSM677740", "GSM677741", "GSM677744" ], "type": "disease state", "id": "GDS5338_3" }, { "dataset_id": "GDS5338", "description": "49", "sample_id": [ "GSM677731" ], "type": "individual", "id": "GDS5338_4" }, { "dataset_id": "GDS5338", "description": "35", "sample_id": [ "GSM677746" ], "type": "individual", "id": "GDS5338_5" }, { "dataset_id": "GDS5338", "description": "23", "sample_id": [ "GSM677730" ], "type": "individual", "id": "GDS5338_6" }, { "dataset_id": "GDS5338", "description": "9", "sample_id": [ "GSM677735" ], "type": "individual", "id": "GDS5338_7" }, { "dataset_id": "GDS5338", "description": "8", "sample_id": [ "GSM677734" ], "type": "individual", "id": "GDS5338_8" }, { "dataset_id": "GDS5338", "description": "30", "sample_id": [ "GSM677736" ], "type": "individual", "id": "GDS5338_9" }, { "dataset_id": "GDS5338", "description": "48", "sample_id": [ "GSM677744" ], "type": "individual", "id": "GDS5338_10" }, { "dataset_id": "GDS5338", "description": "44", "sample_id": [ "GSM677741" ], "type": "individual", "id": "GDS5338_11" }, { "dataset_id": "GDS5338", "description": "22", "sample_id": [ "GSM677740" ], "type": "individual", "id": "GDS5338_12" } ], "taxid": "9606", "genes": 18739, "aggregation_function": "mean", "name": "GDS5338", "version": 1.0, "instances": "9", "variables": 18742, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5338.tab", "compression": "gz" } ], [ [ "GDS5339.tab" ], { "title": "Endometriosis: ectopic and eutopic endometrium", "description": "Analysis of ectopic endometria and eutopic endometria from endometriosis patients. Endometriosis is characterized by the presence of endometrial tissue at extra-uterine sites. Results provide insight into the molecular mechanisms underlying endometriosis pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "23460397", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "transformed count", "reference_series": "GSE25628", "order": "none", "update_date": "Nov 24 2014", "subsets": [ { "dataset_id": "GDS5339", "description": "endometriosis", "sample_id": [ "GSM629732", "GSM629730", "GSM629723", "GSM629728", "GSM629721", "GSM629726", "GSM629719", "GSM629739", "GSM629731", "GSM629738", "GSM629737", "GSM629736", "GSM629720", "GSM629734", "GSM629733", "GSM629740" ], "type": "disease state", "id": "GDS5339_1" }, { "dataset_id": "GDS5339", "description": "control", "sample_id": [ "GSM629724", "GSM629729", "GSM629722", "GSM629727", "GSM629735", "GSM629725" ], "type": "disease state", "id": "GDS5339_2" }, { "dataset_id": "GDS5339", "description": "ectopic endometrium", "sample_id": [ "GSM629732", "GSM629730", "GSM629723", "GSM629728", "GSM629721", "GSM629726", "GSM629719" ], "type": "tissue", "id": "GDS5339_3" }, { "dataset_id": "GDS5339", "description": "eutopic endometrium", "sample_id": [ "GSM629739", "GSM629731", "GSM629738", "GSM629737", "GSM629736", "GSM629720", "GSM629734", "GSM629733", "GSM629740" ], "type": "tissue", "id": "GDS5339_4" }, { "dataset_id": "GDS5339", "description": "normal endometrium", "sample_id": [ "GSM629724", "GSM629729", "GSM629722", "GSM629727", "GSM629735", "GSM629725" ], "type": "tissue", "id": "GDS5339_5" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5339", "version": 1.0, "instances": "22", "variables": 14057, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5339.tab", "compression": "gz" } ], [ [ "GDS534.tab" ], { "title": "Smoking-induced changes in airway transcriptome", "description": "Analysis of cigarette smoking-induced changes in bronchial epithelia, and reversibility of effects when smoking is discontinued. May provide insight to molecular events leading to chronic obstructive pulmonary disease (COPD) and lung cancer.", "type": "Expression profiling by array", "pubmed_id": "15210990", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "75", "value_type": "count", "reference_series": "GSE994", "order": "none", "update_date": "May 02 2004", "subsets": [ { "dataset_id": "GDS534", "description": "current smoker", "sample_id": [ "GSM15684", "GSM15685", "GSM15686", "GSM15687", "GSM15688", "GSM15689", "GSM15690", "GSM15691", "GSM15692", "GSM15693", "GSM15694", "GSM15695", "GSM15696", "GSM15697", "GSM15698", "GSM15699", "GSM15700", "GSM15701", "GSM15702", "GSM15703", "GSM15704", "GSM15705", "GSM15706", "GSM15707", "GSM15708", "GSM15709", "GSM15710", "GSM15711", "GSM15712", "GSM15713", "GSM15714", "GSM15715", "GSM15716", "GSM15717" ], "type": "other", "id": "GDS534_1" }, { "dataset_id": "GDS534", "description": "never smoked", "sample_id": [ "GSM15718", "GSM15719", "GSM15720", "GSM15721", "GSM15722", "GSM15723", "GSM15724", "GSM15725", "GSM15726", "GSM15727", "GSM15728", "GSM15729", "GSM15730", "GSM15731", "GSM15732", "GSM15733", "GSM15734", "GSM15735", "GSM15736", "GSM15737", "GSM15738", "GSM15739", "GSM15740" ], "type": "other", "id": "GDS534_2" }, { "dataset_id": "GDS534", "description": "former smoker", "sample_id": [ "GSM15741", "GSM15742", "GSM15743", "GSM15744", "GSM15745", "GSM15746", "GSM15747", "GSM15748", "GSM15749", "GSM15750", "GSM15751", "GSM15752", "GSM15753", "GSM15754", "GSM15755", "GSM15756", "GSM15757", "GSM15758" ], "type": "other", "id": "GDS534_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS534", "version": 1.0, "instances": "75", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS534.tab", "compression": "gz" } ], [ [ "GDS5340.tab" ], { "title": "Quinazolone RVX-208 effect on liver carcinoma cell line", "description": "Analysis of HepG2 liver carcinoma cells treated with the quinazolone RVX-208 or the triazolothienodiazepine JQ1, a BET bromodomain (BD) inhibitor. BET protein dysfunction is linked to cancer. Results provide insight into the difference in affinity of RVX-208 for the 1st and 2nd BDs in BET proteins.", "type": "Expression profiling by array", "pubmed_id": "24248379", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE51143", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5340", "description": "control", "sample_id": [ "GSM1239644", "GSM1239645", "GSM1239646" ], "type": "agent", "id": "GDS5340_1" }, { "dataset_id": "GDS5340", "description": "JQ1", "sample_id": [ "GSM1239647", "GSM1239648" ], "type": "agent", "id": "GDS5340_2" }, { "dataset_id": "GDS5340", "description": "RVX-208", "sample_id": [ "GSM1239649", "GSM1239650", "GSM1239651" ], "type": "agent", "id": "GDS5340_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5340", "version": 1.0, "instances": "8", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5340.tab", "compression": "gz" } ], [ [ "GDS5341.tab" ], { "title": "Mitochondrial complex I inhibitor rotenone effect on primary cortical neurons: time course", "description": "Analysis of cortical neurons treated with 10nM rotenone for 8, 15, and 24hrs. Rotenone is a classical, high affinity inhibitor of mitochondrial complex I. Results provide insight into temporal molecular events underlying rotenone-mediated cortical neuronal death.", "type": "Expression profiling by array", "pubmed_id": "23186747", "platform": "GPL6103", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "24613", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "transformed count", "reference_series": "GSE22997", "order": "ordered", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5341", "description": "hour 0", "sample_id": [ "GSM567521", "GSM567522", "GSM567523", "GSM567524" ], "type": "time", "id": "GDS5341_1" }, { "dataset_id": "GDS5341", "description": "hour 8", "sample_id": [ "GSM567532", "GSM567533", "GSM567534" ], "type": "time", "id": "GDS5341_2" }, { "dataset_id": "GDS5341", "description": "hour 15", "sample_id": [ "GSM567535", "GSM567536", "GSM567537" ], "type": "time", "id": "GDS5341_3" }, { "dataset_id": "GDS5341", "description": "hour 24", "sample_id": [ "GSM567538", "GSM567539", "GSM567540" ], "type": "time", "id": "GDS5341_4" }, { "dataset_id": "GDS5341", "description": "control", "sample_id": [ "GSM567521", "GSM567522", "GSM567523", "GSM567524" ], "type": "agent", "id": "GDS5341_5" }, { "dataset_id": "GDS5341", "description": "rotenone", "sample_id": [ "GSM567532", "GSM567533", "GSM567534", "GSM567535", "GSM567536", "GSM567537", "GSM567538", "GSM567539", "GSM567540" ], "type": "agent", "id": "GDS5341_6" } ], "taxid": "10090", "genes": 19378, "aggregation_function": "mean", "name": "GDS5341", "version": 1.0, "instances": "13", "variables": 19381, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5341.tab", "compression": "gz" } ], [ [ "GDS5342.tab" ], { "title": "Maternal western diet effect on post-weaning low-fat diet fed offspring liver", "description": "Analysis of liver of C57BL/6J male offspring exposed prenatally to a western-style diet (rich in energy, fat, cholesterol) or a low-fat diet and then a post-weaning low-fat diet. Results provide insight into the role of maternal western diet in the development of liver disease in offspring.", "type": "Expression profiling by array", "pubmed_id": "24224789", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE44901", "order": "none", "update_date": "Dec 30 2015", "subsets": [ { "dataset_id": "GDS5342", "description": "prenatal western diet, post-weaning low-fat diet", "sample_id": [ "GSM1093620", "GSM1093611", "GSM1093610", "GSM1093607", "GSM1093606" ], "type": "protocol", "id": "GDS5342_1" }, { "dataset_id": "GDS5342", "description": "prenatal low-fat diet, post-weaning low-fat diet", "sample_id": [ "GSM1093618", "GSM1093617", "GSM1093616", "GSM1093614", "GSM1093613", "GSM1093603" ], "type": "protocol", "id": "GDS5342_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5342", "version": 1.0, "instances": "11", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5342.tab", "compression": "gz" } ], [ [ "GDS5343.tab" ], { "title": "T helper type 9 cells stimulated with anti-CD3 antibody", "description": "Analysis of naive CD4+ T cells cultured under T helper type 9 (Th9) conditions for 5 days and activated with anti-CD3 antibody. Th9 cells are a subpopulation of CD4+ effector T cells that secrete high levels of interleukin-9. Results provide insight into the molecular basis of the Th9 phenotype.", "type": "Expression profiling by array", "pubmed_id": "24216482", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE44937", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5343", "description": "anti-CD3 stimulated", "sample_id": [ "GSM1094169", "GSM1094170", "GSM1094171" ], "type": "protocol", "id": "GDS5343_1" }, { "dataset_id": "GDS5343", "description": "unstimulated", "sample_id": [ "GSM1094166", "GSM1094167", "GSM1094168" ], "type": "protocol", "id": "GDS5343_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5343", "version": 1.0, "instances": "6", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5343.tab", "compression": "gz" } ], [ [ "GDS5344.tab" ], { "title": "Streptozotocin-induced type 1 diabetes model: brain hypothalamus", "description": "Analysis of hypothalamus from streptozotocin-induced diabetic males (a model of insulin-deficient, type 1 diabetes). The hypothalamus controls the endocrine system, appetite and energy balance. Results provide molecular insight into how diabetes affects hypothalamic function.", "type": "Expression profiling by array", "pubmed_id": "21109190", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE62013", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5344", "description": "ob/ob obese", "sample_id": [ "GSM1518423", "GSM1518424", "GSM1518425", "GSM1518426", "GSM1518427" ], "type": "disease state", "id": "GDS5344_1" }, { "dataset_id": "GDS5344", "description": "streptozotocin-induced diabetic", "sample_id": [ "GSM1518417", "GSM1518418", "GSM1518419", "GSM1518420", "GSM1518421", "GSM1518422" ], "type": "disease state", "id": "GDS5344_2" }, { "dataset_id": "GDS5344", "description": "control", "sample_id": [ "GSM1518411", "GSM1518412", "GSM1518413", "GSM1518414", "GSM1518415", "GSM1518416" ], "type": "disease state", "id": "GDS5344_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5344", "version": 1.0, "instances": "17", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5344.tab", "compression": "gz" } ], [ [ "GDS5345.tab" ], { "title": "Dietary vitamin D3 supplementation effect on hippocampus: dose effect", "description": "Analysis of hippocampus from F344 rats fed dietary supplement of cholecalciferol (vitamin D3) at doses of 10,000, 1000 and 100 IU/kg diet for 18 weeks. Results provide insight into molecular mechanisms underlying vitamin D-mediated synaptic function enhancement.", "type": "Expression profiling by array", "pubmed_id": "25267625", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "transformed count", "reference_series": "GSE61326", "order": "ordered", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5345", "description": "100 IU/kg diet, low", "sample_id": [ "GSM1502412", "GSM1502413", "GSM1502414", "GSM1502415", "GSM1502416", "GSM1502417", "GSM1502418", "GSM1502419" ], "type": "dose", "id": "GDS5345_1" }, { "dataset_id": "GDS5345", "description": "1000 IU/kg diet, medium", "sample_id": [ "GSM1502420", "GSM1502421", "GSM1502422", "GSM1502423", "GSM1502424", "GSM1502425", "GSM1502426", "GSM1502427", "GSM1502428" ], "type": "dose", "id": "GDS5345_2" }, { "dataset_id": "GDS5345", "description": "10,000 IU/kg diet, high", "sample_id": [ "GSM1502429", "GSM1502430", "GSM1502431", "GSM1502432", "GSM1502433", "GSM1502434", "GSM1502435", "GSM1502436", "GSM1502437" ], "type": "dose", "id": "GDS5345_3" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS5345", "version": 1.0, "instances": "26", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5345.tab", "compression": "gz" } ], [ [ "GDS5346.tab" ], { "title": "BET bromodomain inhibitor JQ1 effect on MYC-amplified medulloblastoma cell lines", "description": "Analysis of 5 MYC-amplified medulloblastoma cell lines treated with the BET bromodomain inhibitor JQ1. Cell lines derived from medulloblastoma patients. Results provide insight into the potential use of BET bromodomain inhibitors in the treatment of MYC-amplified medulloblastomas.", "type": "Expression profiling by array", "pubmed_id": "24297863", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE51020", "order": "none", "update_date": "Oct 27 2014", "subsets": [ { "dataset_id": "GDS5346", "description": "MB002", "sample_id": [ "GSM1234970", "GSM1234971" ], "type": "cell line", "id": "GDS5346_1" }, { "dataset_id": "GDS5346", "description": "MB004", "sample_id": [ "GSM1234972", "GSM1234973" ], "type": "cell line", "id": "GDS5346_2" }, { "dataset_id": "GDS5346", "description": "D283", "sample_id": [ "GSM1234974", "GSM1234975" ], "type": "cell line", "id": "GDS5346_3" }, { "dataset_id": "GDS5346", "description": "D458", "sample_id": [ "GSM1234976", "GSM1234977" ], "type": "cell line", "id": "GDS5346_4" }, { "dataset_id": "GDS5346", "description": "D556", "sample_id": [ "GSM1234978", "GSM1234979" ], "type": "cell line", "id": "GDS5346_5" }, { "dataset_id": "GDS5346", "description": "active JQ1", "sample_id": [ "GSM1234970", "GSM1234972", "GSM1234974", "GSM1234976", "GSM1234978" ], "type": "agent", "id": "GDS5346_6" }, { "dataset_id": "GDS5346", "description": "inactive JQ1", "sample_id": [ "GSM1234971", "GSM1234973", "GSM1234975", "GSM1234977", "GSM1234979" ], "type": "agent", "id": "GDS5346_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5346", "version": 1.0, "instances": "10", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5346.tab", "compression": "gz" } ], [ [ "GDS5347.tab" ], { "title": "miR-483 overexpression effect on IGF2 expressing sarcoma cell line", "description": "Analysis of MHH-ES-1 Ewing's sarcoma cells overexpressing miR-483. Ewing's sarcoma is an aggressive pediatric tumor expressing endogenous IGF2. miR-483-5p is embedded within the IGF2 gene. Results provide insight into the role of miR-483 in IGF2 expression.", "type": "Expression profiling by array", "pubmed_id": "24298054", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE50980", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5347", "description": "miR-483-5p overexpression", "sample_id": [ "GSM1233786", "GSM1233787" ], "type": "protocol", "id": "GDS5347_1" }, { "dataset_id": "GDS5347", "description": "miR-483-3p overexpression", "sample_id": [ "GSM1233790" ], "type": "protocol", "id": "GDS5347_2" }, { "dataset_id": "GDS5347", "description": "control", "sample_id": [ "GSM1233788", "GSM1233789" ], "type": "protocol", "id": "GDS5347_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5347", "version": 1.0, "instances": "5", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5347.tab", "compression": "gz" } ], [ [ "GDS5348.tab" ], { "title": "miR-203 overexpression effect on mesenchymal-like breast cancer cell line", "description": "Analysis of SUM159 mesenchymal-like breast cancer cells overexpressing miR-203. Result provide insight into the role of miR-203 in epithelial-mesenchymal transition and metastasis in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "24045437", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE50697", "order": "none", "update_date": "Oct 27 2014", "subsets": [ { "dataset_id": "GDS5348", "description": "control", "sample_id": [ "GSM1226581", "GSM1226582", "GSM1226583" ], "type": "protocol", "id": "GDS5348_1" }, { "dataset_id": "GDS5348", "description": "miR-203 overexpression", "sample_id": [ "GSM1226584", "GSM1226585", "GSM1226586" ], "type": "protocol", "id": "GDS5348_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5348", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5348.tab", "compression": "gz" } ], [ [ "GDS5349.tab" ], { "title": "Dendritic cell subsets", "description": "Analysis of FACS-sorted dermal macrophage, epidermal Langerhans and CD14+ dendritic cell (DC) subsets. DCs, monocytes and macrophages are leukocytes with critical roles in immunity. Result provide insight into molecular profiles distinguishing dermal DCs from monocyte-derived cells and macrophages.", "type": "Expression profiling by array", "pubmed_id": "25200712", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE60317", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5349", "description": "CD14+ dendritic cells", "sample_id": [ "GSM1471629", "GSM1471630", "GSM1471631", "GSM1471632" ], "type": "cell type", "id": "GDS5349_1" }, { "dataset_id": "GDS5349", "description": "Macrophages", "sample_id": [ "GSM1471633", "GSM1471634", "GSM1471635", "GSM1471636" ], "type": "cell type", "id": "GDS5349_2" }, { "dataset_id": "GDS5349", "description": "Langerhans cells", "sample_id": [ "GSM1471637", "GSM1471638", "GSM1471639" ], "type": "cell type", "id": "GDS5349_3" }, { "dataset_id": "GDS5349", "description": "donor: X213", "sample_id": [ "GSM1471629" ], "type": "individual", "id": "GDS5349_4" }, { "dataset_id": "GDS5349", "description": "donor: X221", "sample_id": [ "GSM1471630", "GSM1471634", "GSM1471637" ], "type": "individual", "id": "GDS5349_5" }, { "dataset_id": "GDS5349", "description": "donor: X231", "sample_id": [ "GSM1471631", "GSM1471635", "GSM1471638" ], "type": "individual", "id": "GDS5349_6" }, { "dataset_id": "GDS5349", "description": "donor: X239", "sample_id": [ "GSM1471632", "GSM1471639" ], "type": "individual", "id": "GDS5349_7" }, { "dataset_id": "GDS5349", "description": "donor: X218", "sample_id": [ "GSM1471633" ], "type": "individual", "id": "GDS5349_8" }, { "dataset_id": "GDS5349", "description": "donor: X312", "sample_id": [ "GSM1471636" ], "type": "individual", "id": "GDS5349_9" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS5349", "version": 1.0, "instances": "11", "variables": 39534, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5349.tab", "compression": "gz" } ], [ [ "GDS535.tab" ], { "title": "Prostate cancer antiandrogen resistance", "description": "Analysis of mechanisms of prostate cancer resistance to antiandrogen therapy. Isogenic hormone-sensitive and drug-resistant hormone-refractory xenograft pairs examined.", "type": "Expression profiling by array", "pubmed_id": "14702632", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE847", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS535", "description": "hormone-refractory", "sample_id": [ "GSM13065", "GSM13067", "GSM13069", "GSM13072", "GSM13074", "GSM13076", "GSM13078" ], "type": "cell type", "id": "GDS535_1" }, { "dataset_id": "GDS535", "description": "hormone-sensitive", "sample_id": [ "GSM13066", "GSM13068", "GSM13070", "GSM13073", "GSM13075", "GSM13077", "GSM13079" ], "type": "cell type", "id": "GDS535_2" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS535", "version": 1.0, "instances": "14", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS535.tab", "compression": "gz" } ], [ [ "GDS5350.tab" ], { "title": "RB1-depleted osteoblast response to ionizing radiation: time course", "description": "Analysis of RB1-depleted primary osteoblasts exposed to 4 Gy of ionizing radiation (IR) for up to 24 hours. IR exposure and germline mutations in RB1 are risk factors for developing osteosarcoma. Results provide insight into the role of RB1 in the response of osteoblasts to IR.", "type": "Expression profiling by array", "pubmed_id": "24231354", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "transformed count", "reference_series": "GSE50532", "order": "none", "update_date": "Oct 27 2014", "subsets": [ { "dataset_id": "GDS5350", "description": "0 h", "sample_id": [ "GSM1220792", "GSM1220798", "GSM1220804", "GSM1220810", "GSM1220816", "GSM1220822" ], "type": "time", "id": "GDS5350_1" }, { "dataset_id": "GDS5350", "description": "2 h", "sample_id": [ "GSM1220793", "GSM1220799", "GSM1220805", "GSM1220811", "GSM1220817", "GSM1220823" ], "type": "time", "id": "GDS5350_2" }, { "dataset_id": "GDS5350", "description": "4 h", "sample_id": [ "GSM1220794", "GSM1220800", "GSM1220806", "GSM1220812", "GSM1220818", "GSM1220824" ], "type": "time", "id": "GDS5350_3" }, { "dataset_id": "GDS5350", "description": "8 h", "sample_id": [ "GSM1220795", "GSM1220801", "GSM1220807", "GSM1220813", "GSM1220819", "GSM1220825" ], "type": "time", "id": "GDS5350_4" }, { "dataset_id": "GDS5350", "description": "16 h", "sample_id": [ "GSM1220796", "GSM1220802", "GSM1220808", "GSM1220814", "GSM1220820", "GSM1220826" ], "type": "time", "id": "GDS5350_5" }, { "dataset_id": "GDS5350", "description": "24 h", "sample_id": [ "GSM1220797", "GSM1220803", "GSM1220809", "GSM1220815", "GSM1220821", "GSM1220827" ], "type": "time", "id": "GDS5350_6" }, { "dataset_id": "GDS5350", "description": "control", "sample_id": [ "GSM1220792", "GSM1220793", "GSM1220794", "GSM1220795", "GSM1220796", "GSM1220797", "GSM1220798", "GSM1220799", "GSM1220800", "GSM1220801", "GSM1220802", "GSM1220803", "GSM1220816", "GSM1220817", "GSM1220818", "GSM1220819", "GSM1220820", "GSM1220821" ], "type": "protocol", "id": "GDS5350_7" }, { "dataset_id": "GDS5350", "description": "RB1 depletion", "sample_id": [ "GSM1220804", "GSM1220805", "GSM1220806", "GSM1220807", "GSM1220808", "GSM1220809", "GSM1220810", "GSM1220811", "GSM1220812", "GSM1220813", "GSM1220814", "GSM1220815", "GSM1220822", "GSM1220823", "GSM1220824", "GSM1220825", "GSM1220826", "GSM1220827" ], "type": "protocol", "id": "GDS5350_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5350", "version": 1.0, "instances": "36", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5350.tab", "compression": "gz" } ], [ [ "GDS5351.tab" ], { "title": "Transforming growth factor-beta effect on normal ovarian fibroblast NOF151 cells", "description": "Analysis of normal ovarian fibroblast NOF151 cells treated with 5ng/mL TGF-\u03b21 or TGF-\u03b22. TGF proposed to modulate ovarian cancer progression by modulating contribution of cancer-associated fibroblasts. Results provide insight into role of TGF-\u03b2 modified fibroblasts in ovarian cancer.", "type": "Expression profiling by array", "pubmed_id": "23824740", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE40266", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5351", "description": "control", "sample_id": [ "GSM989481", "GSM989483", "GSM989485" ], "type": "agent", "id": "GDS5351_1" }, { "dataset_id": "GDS5351", "description": "TGF-beta-1", "sample_id": [ "GSM989488", "GSM989490", "GSM989492" ], "type": "agent", "id": "GDS5351_2" }, { "dataset_id": "GDS5351", "description": "TGF-beta-2", "sample_id": [ "GSM989494", "GSM989496", "GSM989499" ], "type": "agent", "id": "GDS5351_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5351", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5351.tab", "compression": "gz" } ], [ [ "GDS5352.tab" ], { "title": "Long noncoding MALAT1 RNA deficiency effect on normal diploid fibroblasts W138", "description": "Analysis of WI38 fibroblasts transfected with MALAT1 antisense oligonucleotides (AS-1, AS-2). MALAT1 RNA is upregulated in cancer tissues and its elevated expression associated with hyper-proliferation. Results provide mechanistic insights on the role of MALAT1 in regulating cellular proliferation.", "type": "Expression profiling by array", "pubmed_id": "23555285", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE44240", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5352", "description": "scramble control transfected", "sample_id": [ "GSM1081140", "GSM1081141", "GSM1081142" ], "type": "protocol", "id": "GDS5352_1" }, { "dataset_id": "GDS5352", "description": "MALAT1 AS-1 (100nM) transfected", "sample_id": [ "GSM1081143", "GSM1081144", "GSM1081145" ], "type": "protocol", "id": "GDS5352_2" }, { "dataset_id": "GDS5352", "description": "MALAT1 AS-2 (100nM) transfected", "sample_id": [ "GSM1081146", "GSM1081147", "GSM1081148" ], "type": "protocol", "id": "GDS5352_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5352", "version": 1.0, "instances": "9", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5352.tab", "compression": "gz" } ], [ [ "GDS5353.tab" ], { "title": "Non-steroidal anti-inflammatory drug treatment effect on serous ovarian adenocarcinoma cell lines", "description": "Analysis of ovarian adenocarcinoma cell lines HEY, OVCAR5 and UCI-101 treated 24h with NSAIDs diclofenac or indomethacin (300mM). NSAID drugs associated with a reduced risk of various cancers. Results provide insight into molecular pathways mediating effects of NSAID treatment in ovarian cancer.", "type": "Expression profiling by array", "pubmed_id": "23637916", "platform": "GPL6104", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "22185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE45052", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5353", "description": "HEY ovarian adenocarcinoma", "sample_id": [ "GSM1096648", "GSM1096649", "GSM1096650" ], "type": "cell line", "id": "GDS5353_1" }, { "dataset_id": "GDS5353", "description": "OVCAR5 ovarian adenocarcinoma", "sample_id": [ "GSM1096651", "GSM1096652", "GSM1096653" ], "type": "cell line", "id": "GDS5353_2" }, { "dataset_id": "GDS5353", "description": "UCI-101 ovarian adenocarcinoma", "sample_id": [ "GSM1096654", "GSM1096655", "GSM1096656" ], "type": "cell line", "id": "GDS5353_3" }, { "dataset_id": "GDS5353", "description": "indomethacin", "sample_id": [ "GSM1096656", "GSM1096653", "GSM1096650" ], "type": "agent", "id": "GDS5353_4" }, { "dataset_id": "GDS5353", "description": "diclofenac", "sample_id": [ "GSM1096655", "GSM1096652", "GSM1096649" ], "type": "agent", "id": "GDS5353_5" }, { "dataset_id": "GDS5353", "description": "contol", "sample_id": [ "GSM1096654", "GSM1096651", "GSM1096648" ], "type": "agent", "id": "GDS5353_6" } ], "taxid": "9606", "genes": 18867, "aggregation_function": "mean", "name": "GDS5353", "version": 1.0, "instances": "9", "variables": 18870, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5353.tab", "compression": "gz" } ], [ [ "GDS5355.tab" ], { "title": "Histone demethylase RBP2 deficiency effect on MDA-MD-231 breast cancer cell line", "description": "Analysis of MDA-MD-231 breast cancer cell line transfected with siRNAs against RBP2. RBP2 is a histone demethylase (also known as JARID1A and KDM5A) associated with breast cancer metastasis. Results provide insight into roles of RBP2 in breast cancer metastasis.", "type": "Expression profiling by array", "pubmed_id": "24582965", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE49119", "order": "none", "update_date": "Nov 20 2014", "subsets": [ { "dataset_id": "GDS5355", "description": "RBP2-siRNA-1 transfected", "sample_id": [ "GSM1194001", "GSM1194002", "GSM1194003" ], "type": "protocol", "id": "GDS5355_1" }, { "dataset_id": "GDS5355", "description": "RBP2-siRNA-2 transfected", "sample_id": [ "GSM1193996", "GSM1193998", "GSM1194000" ], "type": "protocol", "id": "GDS5355_2" }, { "dataset_id": "GDS5355", "description": "control siRNA transfected", "sample_id": [ "GSM1193995", "GSM1193997", "GSM1193999" ], "type": "protocol", "id": "GDS5355_3" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5355", "version": 1.0, "instances": "9", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5355.tab", "compression": "gz" } ], [ [ "GDS5356.tab" ], { "title": "RAW264.7 macrophage cell line response to murine norovirus infection", "description": "Analysis of RAW264.7 macrophage cells infected with murine norovirus (MNV-1). MNV-1 is used a model for human norovirus infection. Results provide insight into the molecular nature of the immune response to norovirus infection.", "type": "Expression profiling by array", "pubmed_id": "24374268", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE50093", "order": "none", "update_date": "Oct 29 2014", "subsets": [ { "dataset_id": "GDS5356", "description": "MNV-1", "sample_id": [ "GSM1214140", "GSM1214141" ], "type": "infection", "id": "GDS5356_1" }, { "dataset_id": "GDS5356", "description": "control", "sample_id": [ "GSM1214138", "GSM1214139" ], "type": "infection", "id": "GDS5356_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5356", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5356.tab", "compression": "gz" } ], [ [ "GDS5357.tab" ], { "title": "Ethanol effect on embryonic eyes: time course", "description": "Analysis of eyes from 24-48 hour post-fertilization embryos exposed to 1.5% ethanol. Ethanol exposure during retinal neurogenesis associated with microphthalmic defects. Results provide insight into molecular mechanisms underlying ethanol exposure-mediated developmental retinal defects.", "type": "Expression profiling by array", "pubmed_id": "24355176", "platform": "GPL1319", "platform_organism": "Danio rerio", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15617", "sample_organism": "Danio rerio", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE51427", "order": "ordered", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5357", "description": "control", "sample_id": [ "GSM1245244", "GSM1245245", "GSM1245247", "GSM1245249", "GSM1245251" ], "type": "agent", "id": "GDS5357_1" }, { "dataset_id": "GDS5357", "description": "ethanol", "sample_id": [ "GSM1245246", "GSM1245248", "GSM1245250", "GSM1245252" ], "type": "agent", "id": "GDS5357_2" }, { "dataset_id": "GDS5357", "description": "24 hours post-fertilization", "sample_id": [ "GSM1245244" ], "type": "time", "id": "GDS5357_3" }, { "dataset_id": "GDS5357", "description": "27 hours post-fertilization", "sample_id": [ "GSM1245245", "GSM1245246" ], "type": "time", "id": "GDS5357_4" }, { "dataset_id": "GDS5357", "description": "30 hours post-fertilization", "sample_id": [ "GSM1245247", "GSM1245248" ], "type": "time", "id": "GDS5357_5" }, { "dataset_id": "GDS5357", "description": "36 hours post-fertilization", "sample_id": [ "GSM1245249", "GSM1245250" ], "type": "time", "id": "GDS5357_6" }, { "dataset_id": "GDS5357", "description": "48 hours post-fertilization", "sample_id": [ "GSM1245251", "GSM1245252" ], "type": "time", "id": "GDS5357_7" } ], "taxid": "7955", "genes": 13300, "aggregation_function": "mean", "name": "GDS5357", "version": 1.0, "instances": "9", "variables": 13303, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5357.tab", "compression": "gz" } ], [ [ "GDS5358.tab" ], { "title": "Obstructive sleep apnea response to continuous positive airway pressure treatment: leukocytes", "description": "Analysis of peripheral blood leukocytes from patients with severe obstructive sleep apnea (OSA) before and after continuous positive airway pressure (CPAP) treatment. Results provide insight into the system-wide molecular response of OSA patients to CPAP therapy.", "type": "Expression profiling by array", "pubmed_id": "24688164", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE49800", "order": "none", "update_date": "Oct 29 2014", "subsets": [ { "dataset_id": "GDS5358", "description": "subject 1", "sample_id": [ "GSM1207208", "GSM1207209" ], "type": "individual", "id": "GDS5358_1" }, { "dataset_id": "GDS5358", "description": "subject 2", "sample_id": [ "GSM1207210", "GSM1207211" ], "type": "individual", "id": "GDS5358_2" }, { "dataset_id": "GDS5358", "description": "subject 3", "sample_id": [ "GSM1207212", "GSM1207213" ], "type": "individual", "id": "GDS5358_3" }, { "dataset_id": "GDS5358", "description": "subject 4", "sample_id": [ "GSM1207214", "GSM1207215" ], "type": "individual", "id": "GDS5358_4" }, { "dataset_id": "GDS5358", "description": "subject 5", "sample_id": [ "GSM1207216", "GSM1207217" ], "type": "individual", "id": "GDS5358_5" }, { "dataset_id": "GDS5358", "description": "subject 6", "sample_id": [ "GSM1207218", "GSM1207219" ], "type": "individual", "id": "GDS5358_6" }, { "dataset_id": "GDS5358", "description": "subject 7", "sample_id": [ "GSM1207220", "GSM1207221" ], "type": "individual", "id": "GDS5358_7" }, { "dataset_id": "GDS5358", "description": "subject 8", "sample_id": [ "GSM1207222", "GSM1207223" ], "type": "individual", "id": "GDS5358_8" }, { "dataset_id": "GDS5358", "description": "subject 9", "sample_id": [ "GSM1207224", "GSM1207225" ], "type": "individual", "id": "GDS5358_9" }, { "dataset_id": "GDS5358", "description": "subject 10", "sample_id": [ "GSM1207226", "GSM1207227" ], "type": "individual", "id": "GDS5358_10" }, { "dataset_id": "GDS5358", "description": "subject 11", "sample_id": [ "GSM1207228", "GSM1207229" ], "type": "individual", "id": "GDS5358_11" }, { "dataset_id": "GDS5358", "description": "subject 12", "sample_id": [ "GSM1207230", "GSM1207231" ], "type": "individual", "id": "GDS5358_12" }, { "dataset_id": "GDS5358", "description": "subject 13", "sample_id": [ "GSM1207232", "GSM1207233" ], "type": "individual", "id": "GDS5358_13" }, { "dataset_id": "GDS5358", "description": "subject 14", "sample_id": [ "GSM1207234", "GSM1207235" ], "type": "individual", "id": "GDS5358_14" }, { "dataset_id": "GDS5358", "description": "subject 15", "sample_id": [ "GSM1207236", "GSM1207237" ], "type": "individual", "id": "GDS5358_15" }, { "dataset_id": "GDS5358", "description": "subject 16", "sample_id": [ "GSM1207238", "GSM1207239" ], "type": "individual", "id": "GDS5358_16" }, { "dataset_id": "GDS5358", "description": "subject 17", "sample_id": [ "GSM1207240", "GSM1207241" ], "type": "individual", "id": "GDS5358_17" }, { "dataset_id": "GDS5358", "description": "subject 18", "sample_id": [ "GSM1207242", "GSM1207243" ], "type": "individual", "id": "GDS5358_18" }, { "dataset_id": "GDS5358", "description": "baseline", "sample_id": [ "GSM1207208", "GSM1207226", "GSM1207228", "GSM1207230", "GSM1207232", "GSM1207234", "GSM1207236", "GSM1207238", "GSM1207240", "GSM1207242", "GSM1207210", "GSM1207212", "GSM1207214", "GSM1207216", "GSM1207218", "GSM1207220", "GSM1207222", "GSM1207224" ], "type": "protocol", "id": "GDS5358_19" }, { "dataset_id": "GDS5358", "description": "CPAP therapy", "sample_id": [ "GSM1207209", "GSM1207227", "GSM1207229", "GSM1207231", "GSM1207233", "GSM1207235", "GSM1207237", "GSM1207239", "GSM1207241", "GSM1207243", "GSM1207211", "GSM1207213", "GSM1207215", "GSM1207217", "GSM1207219", "GSM1207221", "GSM1207223", "GSM1207225" ], "type": "protocol", "id": "GDS5358_20" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5358", "version": 1.0, "instances": "36", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5358.tab", "compression": "gz" } ], [ [ "GDS5359.tab" ], { "title": "Chromatin assembly factor 1A deficiency effect on IMR32 neuroblastoma cells: time course", "description": "Analysis of IMR32 neuroblastoma cells upon CHAF1A silencing over a time course (0, 5 and 10 days). CHAF1A is a histone chaperone and epigenetic regulator. Results provide insight into the role of CHAF1A in neuroblastoma progression.", "type": "Expression profiling by array", "pubmed_id": "24335960", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE51978", "order": "none", "update_date": "Nov 25 2014", "subsets": [ { "dataset_id": "GDS5359", "description": "day 0", "sample_id": [ "GSM1256615", "GSM1256616", "GSM1256617" ], "type": "time", "id": "GDS5359_1" }, { "dataset_id": "GDS5359", "description": "day 5", "sample_id": [ "GSM1256618", "GSM1256619", "GSM1256620" ], "type": "time", "id": "GDS5359_2" }, { "dataset_id": "GDS5359", "description": "day 10", "sample_id": [ "GSM1256621", "GSM1256622", "GSM1256623" ], "type": "time", "id": "GDS5359_3" }, { "dataset_id": "GDS5359", "description": "control", "sample_id": [ "GSM1256615", "GSM1256616", "GSM1256617" ], "type": "protocol", "id": "GDS5359_4" }, { "dataset_id": "GDS5359", "description": "CHAF1A knockdown", "sample_id": [ "GSM1256618", "GSM1256619", "GSM1256620", "GSM1256621", "GSM1256622", "GSM1256623" ], "type": "protocol", "id": "GDS5359_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5359", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5359.tab", "compression": "gz" } ], [ [ "GDS536.tab" ], { "title": "Androgen receptor antagonist to agonist conversion", "description": "Examination of antagonist to agonist conversion in androgen receptor-expressing hormone-sensitive LNCaP prostate cancer cells. Cells challenged with increasing doses of R1881, or bicalutamide.", "type": "Expression profiling by array", "pubmed_id": "14702632", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE846", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS536", "description": "AR-expressing LNCaP", "sample_id": [ "GSM13080", "GSM13081", "GSM13082", "GSM13083", "GSM13084", "GSM13085", "GSM13086", "GSM13087" ], "type": "cell type", "id": "GDS536_1" }, { "dataset_id": "GDS536", "description": "control LNCaP", "sample_id": [ "GSM13088", "GSM13089", "GSM13090", "GSM13091", "GSM13092", "GSM13093", "GSM13094", "GSM13095", "GSM13096" ], "type": "cell type", "id": "GDS536_2" }, { "dataset_id": "GDS536", "description": "vehicle", "sample_id": [ "GSM13086", "GSM13087", "GSM13095", "GSM13096" ], "type": "agent", "id": "GDS536_3" }, { "dataset_id": "GDS536", "description": "bicalutamide", "sample_id": [ "GSM13080", "GSM13088", "GSM13089" ], "type": "agent", "id": "GDS536_4" }, { "dataset_id": "GDS536", "description": "R1881", "sample_id": [ "GSM13081", "GSM13082", "GSM13083", "GSM13084", "GSM13085", "GSM13090", "GSM13091", "GSM13092", "GSM13093", "GSM13094" ], "type": "agent", "id": "GDS536_5" }, { "dataset_id": "GDS536", "description": "N/A", "sample_id": [ "GSM13086", "GSM13087", "GSM13095", "GSM13096" ], "type": "dose", "id": "GDS536_6" }, { "dataset_id": "GDS536", "description": "10 pM", "sample_id": [ "GSM13081", "GSM13090" ], "type": "dose", "id": "GDS536_7" }, { "dataset_id": "GDS536", "description": "30 pM", "sample_id": [ "GSM13083", "GSM13092" ], "type": "dose", "id": "GDS536_8" }, { "dataset_id": "GDS536", "description": "90 pM", "sample_id": [ "GSM13085", "GSM13094" ], "type": "dose", "id": "GDS536_9" }, { "dataset_id": "GDS536", "description": "270 pM", "sample_id": [ "GSM13082", "GSM13091" ], "type": "dose", "id": "GDS536_10" }, { "dataset_id": "GDS536", "description": "810 pM", "sample_id": [ "GSM13084", "GSM13093" ], "type": "dose", "id": "GDS536_11" }, { "dataset_id": "GDS536", "description": "10 uM", "sample_id": [ "GSM13080", "GSM13088", "GSM13089" ], "type": "dose", "id": "GDS536_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS536", "version": 1.0, "instances": "17", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS536.tab", "compression": "gz" } ], [ [ "GDS5360.tab" ], { "title": "Casein kinase 1 \u03b1 deficiency effect on leukemia stem cells", "description": "Analysis of leukemia stem cells (LSC) knocked down for casein kinase 1 \u03b1 (Csnk1a1). Csnk1a1, a serine-threonine kinase, is critical for acute myeloid leukemia (AML) cell survival in vivo. Results provide insight into the role of Csnk1a1 in AML.", "type": "Expression profiling by array", "pubmed_id": "24616378", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE52928", "order": "none", "update_date": "Nov 25 2014", "subsets": [ { "dataset_id": "GDS5360", "description": "control", "sample_id": [ "GSM1278259", "GSM1278260", "GSM1278261" ], "type": "protocol", "id": "GDS5360_1" }, { "dataset_id": "GDS5360", "description": "Csnk1a1 knockdown", "sample_id": [ "GSM1278262", "GSM1278263", "GSM1278264", "GSM1278265", "GSM1278266", "GSM1278267" ], "type": "protocol", "id": "GDS5360_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5360", "version": 1.0, "instances": "9", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5360.tab", "compression": "gz" } ], [ [ "GDS5361.tab" ], { "title": "Normal mammary glands at three developmental stages: adipose stroma", "description": "Analysis of adipose stroma from nulliparous, lactating and involuting mammary glands. Pregnancy-associated breast cancers (PABCs) diagnosed during lactation are generally more aggressive with poorer prognosis. Results provide insight into the role of stromal changes in the pathogenesis of PABCs.", "type": "Expression profiling by array", "pubmed_id": "24405573", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE53044", "order": "ordered", "update_date": "Nov 26 2014", "subsets": [ { "dataset_id": "GDS5361", "description": "nulliparous (week 8)", "sample_id": [ "GSM1280905", "GSM1280906", "GSM1280907" ], "type": "development stage", "id": "GDS5361_1" }, { "dataset_id": "GDS5361", "description": "lactation (day 5)", "sample_id": [ "GSM1280908", "GSM1280909", "GSM1280910" ], "type": "development stage", "id": "GDS5361_2" }, { "dataset_id": "GDS5361", "description": "involution (day3)", "sample_id": [ "GSM1280911", "GSM1280912", "GSM1280913" ], "type": "development stage", "id": "GDS5361_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5361", "version": 1.0, "instances": "9", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5361.tab", "compression": "gz" } ], [ [ "GDS5362.tab" ], { "title": "Anaplastic thyroid carcinomas: thyroid biopsies", "description": "Analysis of anaplastic thyroid carcinomas (ATC), fresh-frozen and fine-needle aspiration biopsies. ATC is a rare but highly lethal form of thyroid cancer. Results provide insight into the molecular alterations contributing to ATC development.", "type": "Expression profiling by array", "pubmed_id": "24423316", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE53072", "order": "none", "update_date": "Oct 30 2014", "subsets": [ { "dataset_id": "GDS5362", "description": "anaplastic thyroid carcinomas", "sample_id": [ "GSM1281641", "GSM1281637", "GSM1281636", "GSM1281643", "GSM1281642" ], "type": "disease state", "id": "GDS5362_1" }, { "dataset_id": "GDS5362", "description": "normal", "sample_id": [ "GSM1281640", "GSM1281639", "GSM1281638", "GSM1281644" ], "type": "disease state", "id": "GDS5362_2" }, { "dataset_id": "GDS5362", "description": "fresh-frozen", "sample_id": [ "GSM1281636", "GSM1281637", "GSM1281641" ], "type": "specimen", "id": "GDS5362_3" }, { "dataset_id": "GDS5362", "description": "fresh-frozen contralateral lobe", "sample_id": [ "GSM1281638", "GSM1281639", "GSM1281640" ], "type": "specimen", "id": "GDS5362_4" }, { "dataset_id": "GDS5362", "description": "fine-needle aspiration", "sample_id": [ "GSM1281642", "GSM1281643" ], "type": "specimen", "id": "GDS5362_5" }, { "dataset_id": "GDS5362", "description": "commercial RNA pool", "sample_id": [ "GSM1281644" ], "type": "specimen", "id": "GDS5362_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5362", "version": 1.0, "instances": "9", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5362.tab", "compression": "gz" } ], [ [ "GDS5363.tab" ], { "title": "Osteoarthritis: peripheral blood mononuclear cells", "description": "Analysis of peripheral blood mononuclear cells (PBMCs) from osteoarthritis (OA) patients. Patients participated in the Genetics osteoARthritis and Progression (GARP) study. Results provide insight into the feasibility of using gene expression profiling of PBMCs to detect the onset of OA.", "type": "Expression profiling by array", "pubmed_id": "23864235", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "139", "value_type": "transformed count", "reference_series": "GSE48556", "order": "none", "update_date": "Oct 30 2014", "subsets": [ { "dataset_id": "GDS5363", "description": "osteoarthritis", "sample_id": [ "GSM1182186", "GSM1182187", "GSM1182188", "GSM1182189", "GSM1182190", "GSM1182191", "GSM1182192", "GSM1182193", "GSM1182194", "GSM1182195", "GSM1182196", "GSM1182197", "GSM1182198", "GSM1182199", "GSM1182200", "GSM1182201", "GSM1182202", "GSM1182203", "GSM1182204", "GSM1182205", "GSM1182206", "GSM1182207", "GSM1182208", "GSM1182209", "GSM1182210", "GSM1182211", "GSM1182212", "GSM1182213", "GSM1182214", "GSM1182215", "GSM1182216", "GSM1182217", "GSM1182218", "GSM1182219", "GSM1182220", "GSM1182221", "GSM1182222", "GSM1182223", "GSM1182224", "GSM1182225", "GSM1182226", "GSM1182227", "GSM1182228", "GSM1182229", "GSM1182230", "GSM1182231", "GSM1182232", "GSM1182233", "GSM1182234", "GSM1182235", "GSM1182236", "GSM1182237", "GSM1182238", "GSM1182239", "GSM1182240", "GSM1182241", "GSM1182242", "GSM1182243", "GSM1182244", "GSM1182245", "GSM1182246", "GSM1182247", "GSM1182248", "GSM1182249", "GSM1182250", "GSM1182251", "GSM1182252", "GSM1182253", "GSM1182254", "GSM1182255", "GSM1182256", "GSM1182257", "GSM1182258", "GSM1182259", "GSM1182260", "GSM1182261", "GSM1182262", "GSM1182263", "GSM1182264", "GSM1182265", "GSM1182266", "GSM1182267", "GSM1182268", "GSM1182269", "GSM1182270", "GSM1182271", "GSM1182272", "GSM1182273", "GSM1182274", "GSM1182275", "GSM1182276", "GSM1182277", "GSM1182278", "GSM1182279", "GSM1182280", "GSM1182281", "GSM1182282", "GSM1182283", "GSM1182284", "GSM1182285", "GSM1182286", "GSM1182287", "GSM1182288", "GSM1182289", "GSM1182290", "GSM1182291" ], "type": "disease state", "id": "GDS5363_1" }, { "dataset_id": "GDS5363", "description": "control", "sample_id": [ "GSM1182292", "GSM1182293", "GSM1182294", "GSM1182295", "GSM1182296", "GSM1182297", "GSM1182298", "GSM1182299", "GSM1182300", "GSM1182301", "GSM1182302", "GSM1182303", "GSM1182304", "GSM1182305", "GSM1182306", "GSM1182307", "GSM1182308", "GSM1182309", "GSM1182310", "GSM1182311", "GSM1182312", "GSM1182313", "GSM1182314", "GSM1182315", "GSM1182316", "GSM1182317", "GSM1182318", "GSM1182319", "GSM1182320", "GSM1182321", "GSM1182322", "GSM1182323", "GSM1182324" ], "type": "disease state", "id": "GDS5363_2" }, { "dataset_id": "GDS5363", "description": "female", "sample_id": [ "GSM1182186", "GSM1182187", "GSM1182188", "GSM1182189", "GSM1182190", "GSM1182191", "GSM1182192", "GSM1182193", "GSM1182194", "GSM1182195", "GSM1182196", "GSM1182197", "GSM1182198", "GSM1182199", "GSM1182200", "GSM1182201", "GSM1182202", "GSM1182203", "GSM1182204", "GSM1182205", "GSM1182206", "GSM1182207", "GSM1182208", "GSM1182209", "GSM1182210", "GSM1182211", "GSM1182212", "GSM1182213", "GSM1182214", "GSM1182215", "GSM1182216", "GSM1182217", "GSM1182218", "GSM1182219", "GSM1182220", "GSM1182221", "GSM1182222", "GSM1182223", "GSM1182224", "GSM1182225", "GSM1182226", "GSM1182227", "GSM1182228", "GSM1182229", "GSM1182230", "GSM1182231", "GSM1182232", "GSM1182233", "GSM1182234", "GSM1182235", "GSM1182236", "GSM1182237", "GSM1182238", "GSM1182239", "GSM1182240", "GSM1182241", "GSM1182242", "GSM1182243", "GSM1182244", "GSM1182245", "GSM1182246", "GSM1182247", "GSM1182248", "GSM1182249", "GSM1182250", "GSM1182251", "GSM1182252", "GSM1182253", "GSM1182254", "GSM1182255", "GSM1182256", "GSM1182257", "GSM1182258", "GSM1182259", "GSM1182260", "GSM1182261", "GSM1182262", "GSM1182263", "GSM1182264", "GSM1182265", "GSM1182266", "GSM1182267", "GSM1182268", "GSM1182269", "GSM1182270", "GSM1182271", "GSM1182272", "GSM1182273", "GSM1182275", "GSM1182276", "GSM1182277", "GSM1182278", "GSM1182279", "GSM1182280", "GSM1182281", "GSM1182282", "GSM1182283", "GSM1182284", "GSM1182285", "GSM1182286", "GSM1182287", "GSM1182288", "GSM1182289", "GSM1182290", "GSM1182291", "GSM1182292", "GSM1182293", "GSM1182294", "GSM1182295", "GSM1182296", "GSM1182298", "GSM1182299", "GSM1182300", "GSM1182301", "GSM1182303", "GSM1182304", "GSM1182305", "GSM1182306", "GSM1182307", "GSM1182309", "GSM1182312", "GSM1182314", "GSM1182316", "GSM1182318", "GSM1182319", "GSM1182320", "GSM1182321", "GSM1182322", "GSM1182324" ], "type": "gender", "id": "GDS5363_3" }, { "dataset_id": "GDS5363", "description": "male", "sample_id": [ "GSM1182274", "GSM1182297", "GSM1182302", "GSM1182308", "GSM1182310", "GSM1182311", "GSM1182313", "GSM1182315", "GSM1182317", "GSM1182323" ], "type": "gender", "id": "GDS5363_4" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5363", "version": 1.0, "instances": "139", "variables": 39958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5363.tab", "compression": "gz" } ], [ [ "GDS5364.tab" ], { "title": "BET inhibitor I-BET726 effect on MYCN-amplified neuroblastoma cell line CHP-212: dose response", "description": "Analysis of CHP-212 neuroblastoma (NB) cells treated with 0.1 or 1 uM I-BET726, a BET inhibitor. MYCN is amplified in CHP-212. BET inhibitors display anti-proliferative activity in MYC driven hematologic cancer models. Results provide insight into the anti-proliferative activity of I-BET726 in NB.", "type": "Expression profiling by array", "pubmed_id": "24009722", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE47386", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5364", "description": "vehicle", "sample_id": [ "GSM1148627", "GSM1148628", "GSM1148629" ], "type": "agent", "id": "GDS5364_1" }, { "dataset_id": "GDS5364", "description": "I-BET726", "sample_id": [ "GSM1148630", "GSM1148631", "GSM1148632", "GSM1148633", "GSM1148634", "GSM1148635" ], "type": "agent", "id": "GDS5364_2" }, { "dataset_id": "GDS5364", "description": "control", "sample_id": [ "GSM1148627", "GSM1148628", "GSM1148629" ], "type": "dose", "id": "GDS5364_3" }, { "dataset_id": "GDS5364", "description": "0.1 uM", "sample_id": [ "GSM1148630", "GSM1148631", "GSM1148632" ], "type": "dose", "id": "GDS5364_4" }, { "dataset_id": "GDS5364", "description": "1 uM", "sample_id": [ "GSM1148633", "GSM1148634", "GSM1148635" ], "type": "dose", "id": "GDS5364_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5364", "version": 1.0, "instances": "9", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5364.tab", "compression": "gz" } ], [ [ "GDS5365.tab" ], { "title": "BET inhibitor I-BET726 effect on non-MYCN-amplified neuroblastoma cell line SK-N-SH: dose response", "description": "Analysis of SK-N-SH neuroblastoma (NB) cells treated with 0.1 or 1 uM I-BET726, a BET inhibitor. MYCN is unamplified in SK-N-SH. BET inhibitors display anti-proliferative activity in MYC driven hematologic cancer models. Results provide insight into the anti-proliferative activity of I-BET726 in NB.", "type": "Expression profiling by array", "pubmed_id": "24009722", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE47386", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5365", "description": "vehicle", "sample_id": [ "GSM1148618", "GSM1148619", "GSM1148620" ], "type": "agent", "id": "GDS5365_1" }, { "dataset_id": "GDS5365", "description": "I-BET726", "sample_id": [ "GSM1148621", "GSM1148622", "GSM1148623", "GSM1148624", "GSM1148625", "GSM1148626" ], "type": "agent", "id": "GDS5365_2" }, { "dataset_id": "GDS5365", "description": "control", "sample_id": [ "GSM1148618", "GSM1148619", "GSM1148620" ], "type": "dose", "id": "GDS5365_3" }, { "dataset_id": "GDS5365", "description": "0.1 uM", "sample_id": [ "GSM1148621", "GSM1148622", "GSM1148623" ], "type": "dose", "id": "GDS5365_4" }, { "dataset_id": "GDS5365", "description": "1 uM", "sample_id": [ "GSM1148624", "GSM1148625", "GSM1148626" ], "type": "dose", "id": "GDS5365_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5365", "version": 1.0, "instances": "9", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5365.tab", "compression": "gz" } ], [ [ "GDS5366.tab" ], { "title": "Cultivated amniotic membrane expanded limbal epithelium", "description": "Analysis of amniotic membrane-expanded limbal epithelium (AMLE) and corneal epithelium (CE). AMLE transplantation in place of donor CE significantly improves outcome in severe limbal stem cell deficiency cases. Results provide insight into molecular processes which characterize AMLE and CE tissues.", "type": "Expression profiling by array", "pubmed_id": "25125605", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE56421", "order": "none", "update_date": "Oct 31 2014", "subsets": [ { "dataset_id": "GDS5366", "description": "amniotic membrane expanded limbal epithelium", "sample_id": [ "GSM1361185", "GSM1361186", "GSM1361187" ], "type": "tissue", "id": "GDS5366_1" }, { "dataset_id": "GDS5366", "description": "central corneal button", "sample_id": [ "GSM1361188", "GSM1361189", "GSM1361190" ], "type": "tissue", "id": "GDS5366_2" }, { "dataset_id": "GDS5366", "description": "cultured", "sample_id": [ "GSM1361185", "GSM1361186", "GSM1361187" ], "type": "growth protocol", "id": "GDS5366_3" }, { "dataset_id": "GDS5366", "description": "not cultured", "sample_id": [ "GSM1361188", "GSM1361189", "GSM1361190" ], "type": "growth protocol", "id": "GDS5366_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5366", "version": 1.0, "instances": "6", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5366.tab", "compression": "gz" } ], [ [ "GDS5367.tab" ], { "title": "miR-542-3p overexpression effect on TP53 wild-type osteosarcoma cell line", "description": "Analysis of U2OS osteosarcoma cells overexpressing miR-542-3p. U2OS contains wild-type p53 tumor suppressor TP53. Results provide insight into the function of miR-542-3p and its role in regulating the expression and function of p53.", "type": "Expression profiling by array", "pubmed_id": "24762395", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE47363", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5367", "description": "control", "sample_id": [ "GSM1148121", "GSM1148123", "GSM1148125" ], "type": "protocol", "id": "GDS5367_1" }, { "dataset_id": "GDS5367", "description": "miR-542-3p overexpression", "sample_id": [ "GSM1148122", "GSM1148124", "GSM1148126" ], "type": "protocol", "id": "GDS5367_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5367", "version": 1.0, "instances": "6", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5367.tab", "compression": "gz" } ], [ [ "GDS5368.tab" ], { "title": "N-terminal truncated GATA1-mutant effect on fetal CD34+ hematopoietic stem and progenitor cells: time course", "description": "Analysis of fetal CD34+ HSPCs expressing N-terminal truncated GATA1-mutant (GATA1s) during myeloid differentiation for 4 and 14 days. GATA1s mutations are associated with transient leukemia (TL)- in Down syndrome neonates. Results provide insight into the role of GATA1s in TL pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24336126", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE56332", "order": "none", "update_date": "Dec 22 2014", "subsets": [ { "dataset_id": "GDS5368", "description": "0 days", "sample_id": [ "GSM1359247", "GSM1359248" ], "type": "time", "id": "GDS5368_1" }, { "dataset_id": "GDS5368", "description": "4 days", "sample_id": [ "GSM1359240", "GSM1359241", "GSM1359242", "GSM1359243", "GSM1359245", "GSM1359246" ], "type": "time", "id": "GDS5368_2" }, { "dataset_id": "GDS5368", "description": "14 days", "sample_id": [ "GSM1359244" ], "type": "time", "id": "GDS5368_3" }, { "dataset_id": "GDS5368", "description": "GATA1 transduced", "sample_id": [ "GSM1359240", "GSM1359241" ], "type": "protocol", "id": "GDS5368_4" }, { "dataset_id": "GDS5368", "description": "GATA1s transduced", "sample_id": [ "GSM1359242", "GSM1359243", "GSM1359244" ], "type": "protocol", "id": "GDS5368_5" }, { "dataset_id": "GDS5368", "description": "control transduced", "sample_id": [ "GSM1359245", "GSM1359246", "GSM1359247", "GSM1359248" ], "type": "protocol", "id": "GDS5368_6" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5368", "version": 1.0, "instances": "9", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5368.tab", "compression": "gz" } ], [ [ "GDS5370.tab" ], { "title": "Ethanol effect on myoblast differentiation in vitro", "description": "Analysis of C2C12 cells cultured for up to 3 days in differentiation medium containing ethanol. Chronic alcoholics suffer from weakness and locomotor difficulty resulting from muscle damage. Results provide insight into the signaling pathways affected by ethanol in differentiating myoblasts.", "type": "Expression profiling by array", "pubmed_id": "23977095", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE46492", "order": "none", "update_date": "Dec 22 2014", "subsets": [ { "dataset_id": "GDS5370", "description": "0 d", "sample_id": [ "GSM1131202", "GSM1131203", "GSM1131204", "GSM1131205" ], "type": "time", "id": "GDS5370_1" }, { "dataset_id": "GDS5370", "description": "1 d", "sample_id": [ "GSM1131206", "GSM1131207", "GSM1131208", "GSM1131209", "GSM1131210", "GSM1131211", "GSM1131212", "GSM1131213" ], "type": "time", "id": "GDS5370_2" }, { "dataset_id": "GDS5370", "description": "2 d", "sample_id": [ "GSM1131214", "GSM1131215", "GSM1131216", "GSM1131217", "GSM1131218", "GSM1131219" ], "type": "time", "id": "GDS5370_3" }, { "dataset_id": "GDS5370", "description": "3 d", "sample_id": [ "GSM1131220", "GSM1131221", "GSM1131222", "GSM1131223", "GSM1131224", "GSM1131225" ], "type": "time", "id": "GDS5370_4" }, { "dataset_id": "GDS5370", "description": "control", "sample_id": [ "GSM1131202", "GSM1131203", "GSM1131204", "GSM1131205", "GSM1131206", "GSM1131207", "GSM1131208", "GSM1131209", "GSM1131214", "GSM1131215", "GSM1131216", "GSM1131220", "GSM1131221", "GSM1131222" ], "type": "agent", "id": "GDS5370_5" }, { "dataset_id": "GDS5370", "description": "ethanol", "sample_id": [ "GSM1131210", "GSM1131211", "GSM1131212", "GSM1131213", "GSM1131217", "GSM1131218", "GSM1131219", "GSM1131223", "GSM1131224", "GSM1131225" ], "type": "agent", "id": "GDS5370_6" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5370", "version": 1.0, "instances": "24", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5370.tab", "compression": "gz" } ], [ [ "GDS5371.tab" ], { "title": "Atypical ubiquitin ligase RNF31 depletion effect on ER-alpha positive breast cancer cell line", "description": "Analysis of MCF-7 breast cancer cells depleted for RNF31. RNF31 is an atypical E3 ubiquitin ligase. MCF-7 is an estrogen receptor (ER) alpha positive cell line. Results provide insight into the role of RNF31 in the ER-alpha stimulated proliferation of breast cancer cells.", "type": "Expression profiling by array", "pubmed_id": "24441041", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE46010", "order": "none", "update_date": "Oct 31 2014", "subsets": [ { "dataset_id": "GDS5371", "description": "control", "sample_id": [ "GSM1121695", "GSM1121696", "GSM1121697" ], "type": "protocol", "id": "GDS5371_1" }, { "dataset_id": "GDS5371", "description": "RNF31 depletion", "sample_id": [ "GSM1121698", "GSM1121699", "GSM1121700", "GSM1121701" ], "type": "protocol", "id": "GDS5371_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5371", "version": 1.0, "instances": "7", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5371.tab", "compression": "gz" } ], [ [ "GDS5372.tab" ], { "title": "NF-kappaB subunit p65/RelA deficiency effect on hematopoietic stem cells", "description": "Analysis of lineage-negative, c-kit+ Sca-1+ Flk2- (LSKF) hematopoietic stem cells (HSCs) lacking the NF-kappaB subunit p65/RelA. LSKF HSCs purified from the bone marrow. Results provide insight into the role of NF-kappaB subunit p65/RelA in HSCs.", "type": "Expression profiling by array", "pubmed_id": "23670180", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE45755", "order": "none", "update_date": "Nov 03 2014", "subsets": [ { "dataset_id": "GDS5372", "description": "wild type", "sample_id": [ "GSM1113664", "GSM1113665", "GSM1113666" ], "type": "genotype/variation", "id": "GDS5372_1" }, { "dataset_id": "GDS5372", "description": "p65/relA null", "sample_id": [ "GSM1113667", "GSM1113668", "GSM1113669" ], "type": "genotype/variation", "id": "GDS5372_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5372", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5372.tab", "compression": "gz" } ], [ [ "GDS5373.tab" ], { "title": "miR-221 expression effect on prostate cancer cell line", "description": "Analysis of PC-3 prostate cancer cells expressing pre-miR-221. miR-221 is frequently downregulated in primary prostate cancer. Results provide insight into the role of miR-221 in the pathogenesis of prostate cancer.", "type": "Expression profiling by array", "pubmed_id": "24607843", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE45627", "order": "none", "update_date": "Nov 03 2014", "subsets": [ { "dataset_id": "GDS5373", "description": "miR-122 expression", "sample_id": [ "GSM1110879", "GSM1110880" ], "type": "protocol", "id": "GDS5373_1" }, { "dataset_id": "GDS5373", "description": "control", "sample_id": [ "GSM1110881", "GSM1110882" ], "type": "protocol", "id": "GDS5373_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5373", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5373.tab", "compression": "gz" } ], [ [ "GDS5374.tab" ], { "title": "Histone/protein acetyltransferase (HAT) deficiency effect on Foxp3+ T-regulatory cells", "description": "Analysis of CD4+CD25+ T regulatory (Treg) cells from C57Bl/6 mice deficient in p300 or CBP (a p300 paralog). p300 and CBP are histone/protein acetyltransferases (HATs). Results provide insight into mechanisms by which HATs affect Treg biology.", "type": "Expression profiling by array", "pubmed_id": "25154413", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE60318", "order": "none", "update_date": "Dec 22 2014", "subsets": [ { "dataset_id": "GDS5374", "description": "CBP-/-", "sample_id": [ "GSM1471640", "GSM1471641", "GSM1471642" ], "type": "genotype/variation", "id": "GDS5374_1" }, { "dataset_id": "GDS5374", "description": "p300-/-", "sample_id": [ "GSM1471643", "GSM1471644", "GSM1471645" ], "type": "genotype/variation", "id": "GDS5374_2" }, { "dataset_id": "GDS5374", "description": "wild type", "sample_id": [ "GSM1471646", "GSM1471647", "GSM1471648" ], "type": "genotype/variation", "id": "GDS5374_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5374", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5374.tab", "compression": "gz" } ], [ [ "GDS5375.tab" ], { "title": "DEK oncogene deficiency effect in U937 leukemic monocyte lymphoma cells", "description": "Analysis of U937 cells following DEK oncogene knockdown by two different shRNAs (shDEK14, shDEK17). The DEK gene is highly expressed in many types of cancer cells and involved in chromosomal translocation in acute myelogenous leukemia. Results provide insight into the role of DEK in gene regulation.", "type": "Expression profiling by array", "pubmed_id": "25216995", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE60732", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5375", "description": "empty vector shRNA control", "sample_id": [ "GSM1486440", "GSM1486441", "GSM1486442" ], "type": "protocol", "id": "GDS5375_1" }, { "dataset_id": "GDS5375", "description": "shDEK14 shRNA knockdown", "sample_id": [ "GSM1486443", "GSM1486444", "GSM1486445" ], "type": "protocol", "id": "GDS5375_2" }, { "dataset_id": "GDS5375", "description": "shDEK17 shRNA knockdown", "sample_id": [ "GSM1486446", "GSM1486447", "GSM1486448" ], "type": "protocol", "id": "GDS5375_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5375", "version": 1.0, "instances": "9", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5375.tab", "compression": "gz" } ], [ [ "GDS5376.tab" ], { "title": "Homeobox protein Nanog transcription factor overexpression effect on colon and intestine cells", "description": "Analysis of colon and intestine cells with ectopic Nanog protein expression. Aggressive tumor progression and poor patient diagnosis have been associated with Nanog expression in different types of tumors. Results provide insight into the role of Nanog in tumor initiation.", "type": "Expression profiling by array", "pubmed_id": "25173648", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE31413", "order": "none", "update_date": "Dec 22 2014", "subsets": [ { "dataset_id": "GDS5376", "description": "intestine", "sample_id": [ "GSM779388", "GSM779389", "GSM779390", "GSM779391" ], "type": "tissue", "id": "GDS5376_1" }, { "dataset_id": "GDS5376", "description": "colon", "sample_id": [ "GSM779392", "GSM779393", "GSM779394", "GSM779395" ], "type": "tissue", "id": "GDS5376_2" }, { "dataset_id": "GDS5376", "description": "Nanog overexpression", "sample_id": [ "GSM779390", "GSM779391", "GSM779394", "GSM779395" ], "type": "protocol", "id": "GDS5376_3" }, { "dataset_id": "GDS5376", "description": "without Nanog overexpression", "sample_id": [ "GSM779388", "GSM779389", "GSM779392", "GSM779393" ], "type": "protocol", "id": "GDS5376_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5376", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5376.tab", "compression": "gz" } ], [ [ "GDS5377.tab" ], { "title": "Folate deficiency effect on methylenetetrahydrofolate reductase MTHFR+/- intestinal neoplasia model: duodenum", "description": "Analysis of intestine from MTHFR+/- BALB/c mice fed a low folate diet (0.3mg/kg) for 1 yr. The MTHFR C677T polymorphism is associated with risk for colorectal cancer. Results provide insight into mechanisms underlying the impact of folate and MTHFR deficiency on tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "24169962", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE34011", "order": "none", "update_date": "Dec 23 2014", "subsets": [ { "dataset_id": "GDS5377", "description": "MTHFR+/+", "sample_id": [ "GSM840458", "GSM840459", "GSM840460", "GSM840461" ], "type": "genotype/variation", "id": "GDS5377_1" }, { "dataset_id": "GDS5377", "description": "MTHFR+/-", "sample_id": [ "GSM840462", "GSM840463", "GSM840464", "GSM840465" ], "type": "genotype/variation", "id": "GDS5377_2" }, { "dataset_id": "GDS5377", "description": "control diet", "sample_id": [ "GSM840458", "GSM840459", "GSM840460", "GSM840461" ], "type": "protocol", "id": "GDS5377_3" }, { "dataset_id": "GDS5377", "description": "low folate diet", "sample_id": [ "GSM840462", "GSM840463", "GSM840464", "GSM840465" ], "type": "protocol", "id": "GDS5377_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5377", "version": 1.0, "instances": "8", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5377.tab", "compression": "gz" } ], [ [ "GDS5378.tab" ], { "title": "Peroxisome proliferator-activated receptor \u03b4 (PPAR\u03b4) activation effect on cultured myotubes", "description": "Analysis of musculus obliquus internus myotubes treated with PPAR\u03b4 agonist GW501516 for 96hrs. PPARs regulate lipid utilization and storage. PPAR\u03b4 is the most abundant PPAR subtype in skeletal muscle. Results provide insight into the molecular effects of PPAR\u03b4 activation on myotubes.", "type": "Expression profiling by array", "pubmed_id": "23991827", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE40789", "order": "none", "update_date": "Dec 23 2014", "subsets": [ { "dataset_id": "GDS5378", "description": "PPAR\u03b4 agonist GW501516", "sample_id": [ "GSM1001499", "GSM1001501", "GSM1001505", "GSM1001503" ], "type": "agent", "id": "GDS5378_1" }, { "dataset_id": "GDS5378", "description": "DMSO", "sample_id": [ "GSM1001502", "GSM1001504", "GSM1001500", "GSM1001498" ], "type": "agent", "id": "GDS5378_2" }, { "dataset_id": "GDS5378", "description": "donor 12", "sample_id": [ "GSM1001499", "GSM1001498" ], "type": "individual", "id": "GDS5378_3" }, { "dataset_id": "GDS5378", "description": "donor 15", "sample_id": [ "GSM1001501", "GSM1001500" ], "type": "individual", "id": "GDS5378_4" }, { "dataset_id": "GDS5378", "description": "donor 31", "sample_id": [ "GSM1001505", "GSM1001504" ], "type": "individual", "id": "GDS5378_5" }, { "dataset_id": "GDS5378", "description": "donor 8", "sample_id": [ "GSM1001503", "GSM1001502" ], "type": "individual", "id": "GDS5378_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5378", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5378.tab", "compression": "gz" } ], [ [ "GDS538.tab" ], { "title": "DNA methylation and histone deacetylation in neural stem cells", "description": "Examination of DNA methylation and histone deacetylation in neural stem cells. Neurospheres from bcl2 transgene E14.5 forebrains treated with 150 nM trichostatin A (histone deacetylase inhibitor) or 500 nM 5-aza-2'-deoxycytidine (demethylating agent).", "type": "Expression profiling by array", "pubmed_id": "18203677", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE587", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS538", "description": "AzaC", "sample_id": [ "GSM8897", "GSM8901" ], "type": "agent", "id": "GDS538_1" }, { "dataset_id": "GDS538", "description": "TSA", "sample_id": [ "GSM8898", "GSM8902" ], "type": "agent", "id": "GDS538_2" }, { "dataset_id": "GDS538", "description": "AzaC/TSA", "sample_id": [ "GSM8899", "GSM8903" ], "type": "agent", "id": "GDS538_3" }, { "dataset_id": "GDS538", "description": "untreated", "sample_id": [ "GSM8900", "GSM8904" ], "type": "agent", "id": "GDS538_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS538", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS538.tab", "compression": "gz" } ], [ [ "GDS5380.tab" ], { "title": "Sodium tungstate effect on insulin receptor substrate 2 knockout mice: pancreatic islets", "description": "Analysis of pancreatic islets from insulin receptor substrate 2 (Irs2) knockouts treated with anti-diabetic compound sodium tungstate for 21 days. Tungstate normalizes glucose tolerance in the Irs2 -/- animals. Results provide insight into the molecular effects of tungstate on pancreatic \u03b2-cells.", "type": "Expression profiling by array", "pubmed_id": "24253047", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE43620", "order": "none", "update_date": "Dec 24 2014", "subsets": [ { "dataset_id": "GDS5380", "description": "wild type", "sample_id": [ "GSM1067240", "GSM1067241", "GSM1067242", "GSM1067243" ], "type": "genotype/variation", "id": "GDS5380_1" }, { "dataset_id": "GDS5380", "description": "Irs2-/- knockout", "sample_id": [ "GSM1067244", "GSM1067245", "GSM1067246", "GSM1067247" ], "type": "genotype/variation", "id": "GDS5380_2" }, { "dataset_id": "GDS5380", "description": "sodium tungstate", "sample_id": [ "GSM1067243", "GSM1067242", "GSM1067247", "GSM1067246" ], "type": "agent", "id": "GDS5380_3" }, { "dataset_id": "GDS5380", "description": "control", "sample_id": [ "GSM1067241", "GSM1067240", "GSM1067245", "GSM1067244" ], "type": "agent", "id": "GDS5380_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5380", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5380.tab", "compression": "gz" } ], [ [ "GDS5381.tab" ], { "title": "Transcription factor ZNF395 effect on RTS3b skin cancer cell line", "description": "Analysis of skin cancer cell line RTS3b-TR-ZNF395 following doxycycline-induced expression of FLAG-tagged ZNF395. Transcription factor ZNF395 is overexpressed in various human cancers, often in response to hypoxia. Results provide insight into the molecular effects of ZNF395 in skin cancer cells.", "type": "Expression profiling by array", "pubmed_id": "24086395", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE44327", "order": "none", "update_date": "Dec 24 2014", "subsets": [ { "dataset_id": "GDS5381", "description": "doxycycline-induced ZNF395", "sample_id": [ "GSM1083282", "GSM1083283", "GSM1083284", "GSM1083285" ], "type": "protocol", "id": "GDS5381_1" }, { "dataset_id": "GDS5381", "description": "control", "sample_id": [ "GSM1083286", "GSM1083287", "GSM1083288", "GSM1083289" ], "type": "protocol", "id": "GDS5381_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5381", "version": 1.0, "instances": "8", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5381.tab", "compression": "gz" } ], [ [ "GDS5382.tab" ], { "title": "Transcription factor Tcfap2c deficiency effect on primordial germ cells", "description": "Analysis of embryonic stem cells (ESCs) depleted for transcription factor Tcfap2c and PGC-like cells (PGCLCs) derived from the Tcfap2c-deficient ESCs. TFAP2C is a member of the activator protein-2 (AP-2) family. Results provide insight into the role of TFAP2C in germ cell fate.", "type": "Expression profiling by array", "pubmed_id": "23967156", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE45941", "order": "none", "update_date": "Jan 06 2015", "subsets": [ { "dataset_id": "GDS5382", "description": "embryonic stem cells", "sample_id": [ "GSM1120061", "GSM1120062", "GSM1120063", "GSM1120064" ], "type": "cell type", "id": "GDS5382_1" }, { "dataset_id": "GDS5382", "description": "primordial germ cells", "sample_id": [ "GSM1120065", "GSM1120066", "GSM1120067", "GSM1120068" ], "type": "cell type", "id": "GDS5382_2" }, { "dataset_id": "GDS5382", "description": "Tcfap2c knockout", "sample_id": [ "GSM1120063", "GSM1120064", "GSM1120067", "GSM1120068" ], "type": "genotype/variation", "id": "GDS5382_3" }, { "dataset_id": "GDS5382", "description": "control", "sample_id": [ "GSM1120061", "GSM1120062", "GSM1120065", "GSM1120066" ], "type": "genotype/variation", "id": "GDS5382_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5382", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5382.tab", "compression": "gz" } ], [ [ "GDS5383.tab" ], { "title": "Interleukin-6 effect on interleukin-6 receptor \u03b1-deficient macrophages", "description": "Analysis of interleukin-6 receptor \u03b1-deficient bone marrow-derived macrophages (BMDMs) stimulated with interleukin-6 (IL-6). Cytokine IL-6 is linked to obesity, and macrophages are key mediators of obesity-associated inflammation. Results provide insight into the role of IL-6 in macrophages.", "type": "Expression profiling by array", "pubmed_id": "24681566", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE47426", "order": "none", "update_date": "Jan 07 2015", "subsets": [ { "dataset_id": "GDS5383", "description": "IL6R\u03b1 knockout", "sample_id": [ "GSM1149306", "GSM1149307", "GSM1149308", "GSM1149309" ], "type": "genotype/variation", "id": "GDS5383_1" }, { "dataset_id": "GDS5383", "description": "control", "sample_id": [ "GSM1149302", "GSM1149303", "GSM1149304", "GSM1149305" ], "type": "genotype/variation", "id": "GDS5383_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5383", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5383.tab", "compression": "gz" } ], [ [ "GDS5384.tab" ], { "title": "Interferon-gamma effect on peripheral blood monocyte-derived dendritic cells", "description": "Analysis of monocyte-derived dendritic cells (moDC) treated with granulocyte-macrophage colony-stimulating factor (GM-CSF) and interleukin (IL)-4 or GM-CSF, IL-4 and interferon (IFN)-\u03b3 for 6d. Results provide insight into effects of IFN-\u03b3 on differentiation and maturation of peripheral blood moDC.", "type": "Expression profiling by array", "pubmed_id": "24678989", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE47621", "order": "none", "update_date": "Jan 07 2015", "subsets": [ { "dataset_id": "GDS5384", "description": "GM-CSF, IL-4 treated", "sample_id": [ "GSM1153452", "GSM1153454", "GSM1153456", "GSM1153457" ], "type": "protocol", "id": "GDS5384_1" }, { "dataset_id": "GDS5384", "description": "GM-CSF, IL-4, INF-\u03b3 treated", "sample_id": [ "GSM1153453", "GSM1153455", "GSM1153458", "GSM1153459" ], "type": "protocol", "id": "GDS5384_2" }, { "dataset_id": "GDS5384", "description": "donor 305", "sample_id": [ "GSM1153452", "GSM1153453" ], "type": "individual", "id": "GDS5384_3" }, { "dataset_id": "GDS5384", "description": "donor 11310", "sample_id": [ "GSM1153454", "GSM1153455" ], "type": "individual", "id": "GDS5384_4" }, { "dataset_id": "GDS5384", "description": "donor 6123", "sample_id": [ "GSM1153456", "GSM1153459" ], "type": "individual", "id": "GDS5384_5" }, { "dataset_id": "GDS5384", "description": "donor 82406", "sample_id": [ "GSM1153457", "GSM1153458" ], "type": "individual", "id": "GDS5384_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5384", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5384.tab", "compression": "gz" } ], [ [ "GDS5385.tab" ], { "title": "Lipopolysaccharide effect on tumor progression locus 2 kinase-deficient macrophages", "description": "Analysis of tumor progression locus 2 (Tpl2)-deficient bone marrow derived macrophages (BMDMs) stimulated with lipopolysaccharide (LPS) for 4 hrs. Tpl2 (Map3k8) is a serine/threonine kinase critical in innate immunity. Results provide insight into the role of Tpl2 in BMDMs during acute inflammation.", "type": "Expression profiling by array", "pubmed_id": "24713702", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE48338", "order": "none", "update_date": "Jan 07 2015", "subsets": [ { "dataset_id": "GDS5385", "description": "Tpl2 knockout", "sample_id": [ "GSM1175318", "GSM1175319", "GSM1175314", "GSM1175315" ], "type": "genotype/variation", "id": "GDS5385_1" }, { "dataset_id": "GDS5385", "description": "Tpl2 wild type", "sample_id": [ "GSM1175316", "GSM1175317", "GSM1175312", "GSM1175313" ], "type": "genotype/variation", "id": "GDS5385_2" }, { "dataset_id": "GDS5385", "description": "lipopolysaccharide stimulated", "sample_id": [ "GSM1175318", "GSM1175319", "GSM1175316", "GSM1175317" ], "type": "protocol", "id": "GDS5385_3" }, { "dataset_id": "GDS5385", "description": "unstimulated", "sample_id": [ "GSM1175314", "GSM1175315", "GSM1175312", "GSM1175313" ], "type": "protocol", "id": "GDS5385_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5385", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5385.tab", "compression": "gz" } ], [ [ "GDS5386.tab" ], { "title": "Histone deacetylase inhibitor and chemotherapy combined effect on Raji Burkitt's lymphoma cell line", "description": "Analysis of Raji Burkitt's lymphoma (BL) cell line treated with histone deacetylase inhibitor HDACi (sodium butyrate, NaB) or chemotherapy (VP-16) or both for 24 hours. Results provide insight into the molecular effects of combined HDACi/VP-16 therapy of this aggressive B-cell lymphoma.", "type": "Expression profiling by array", "pubmed_id": "24577510", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE48399", "order": "none", "update_date": "Jan 08 2015", "subsets": [ { "dataset_id": "GDS5386", "description": "control", "sample_id": [ "GSM1177065", "GSM1177069" ], "type": "protocol", "id": "GDS5386_1" }, { "dataset_id": "GDS5386", "description": "sodium butyrate", "sample_id": [ "GSM1177067", "GSM1177071" ], "type": "protocol", "id": "GDS5386_2" }, { "dataset_id": "GDS5386", "description": "chemotherapy", "sample_id": [ "GSM1177066", "GSM1177070" ], "type": "protocol", "id": "GDS5386_3" }, { "dataset_id": "GDS5386", "description": "sodium butyrate + chemotherapy", "sample_id": [ "GSM1177068", "GSM1177072" ], "type": "protocol", "id": "GDS5386_4" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5386", "version": 1.0, "instances": "8", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5386.tab", "compression": "gz" } ], [ [ "GDS5387.tab" ], { "title": "Transforming growth factor \u03b2 effect on mammary epithelial NMuMG cells overexpressing major satellite transcripts", "description": "Analysis of major satellite-NMuMG cells treated with TGF-\u03b2 for 8 hr. Major satellites are noncoding pericentromeric transcripts essential for heterochromatin formation. Results provide insight into the role of pericentromeric transcription on TGF-\u03b2-induced epithelial-mesenchymal transition (EMT).", "type": "Expression profiling by array", "pubmed_id": "24239292", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE49073", "order": "none", "update_date": "Jan 20 2015", "subsets": [ { "dataset_id": "GDS5387", "description": "hour 0", "sample_id": [ "GSM1193385", "GSM1193386", "GSM1193389", "GSM1193390" ], "type": "time", "id": "GDS5387_1" }, { "dataset_id": "GDS5387", "description": "hour 8", "sample_id": [ "GSM1193387", "GSM1193388", "GSM1193391", "GSM1193392" ], "type": "time", "id": "GDS5387_2" }, { "dataset_id": "GDS5387", "description": "overexpressing major satellite sequences", "sample_id": [ "GSM1193389", "GSM1193390", "GSM1193391", "GSM1193392" ], "type": "genotype/variation", "id": "GDS5387_3" }, { "dataset_id": "GDS5387", "description": "control", "sample_id": [ "GSM1193385", "GSM1193386", "GSM1193387", "GSM1193388" ], "type": "genotype/variation", "id": "GDS5387_4" }, { "dataset_id": "GDS5387", "description": "transforming growth factor \u03b2", "sample_id": [ "GSM1193387", "GSM1193388", "GSM1193391", "GSM1193392" ], "type": "agent", "id": "GDS5387_5" }, { "dataset_id": "GDS5387", "description": "untreated", "sample_id": [ "GSM1193385", "GSM1193386", "GSM1193389", "GSM1193390" ], "type": "agent", "id": "GDS5387_6" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5387", "version": 1.0, "instances": "8", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5387.tab", "compression": "gz" } ], [ [ "GDS5388.tab" ], { "title": "Glucosamine treatment effect on KMH2 malignant lymphocytes", "description": "Analysis of Hodgkin lymphoma-derived cell line KMH2 treated with glucosamine (GlcN) for 24 hr. GlcN induces the posttranslational modification of proteins with O-linked \u03b2-N-acetylglucosamine (O-GlcNAc). Results provide insight into the molecular mechanisms activated following GlcN intake.", "type": "Expression profiling by array", "pubmed_id": "25128556", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE49185", "order": "none", "update_date": "Jan 16 2015", "subsets": [ { "dataset_id": "GDS5388", "description": "control", "sample_id": [ "GSM1195162", "GSM1195163", "GSM1195164" ], "type": "agent", "id": "GDS5388_1" }, { "dataset_id": "GDS5388", "description": "glucosamine", "sample_id": [ "GSM1195165", "GSM1195166", "GSM1195167" ], "type": "agent", "id": "GDS5388_2" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS5388", "version": 1.0, "instances": "6", "variables": 26598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5388.tab", "compression": "gz" } ], [ [ "GDS5389.tab" ], { "title": "Neuron-specific T-box transcription factor deficiency effect on embryonic day 16.5 forebrains", "description": "Analysis of E16.5 forebrains from neuron-specific T-box transcription factor (Tbr1)-/- embryos. Results provide insight the molecular mechanisms underlying regulation of brain development by TBR1.", "type": "Expression profiling by array", "pubmed_id": "24441682", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE49237", "order": "none", "update_date": "Jan 16 2015", "subsets": [ { "dataset_id": "GDS5389", "description": "Tbr1-/- mutant", "sample_id": [ "GSM1195704", "GSM1195705", "GSM1195706", "GSM1195707" ], "type": "genotype/variation", "id": "GDS5389_1" }, { "dataset_id": "GDS5389", "description": "wild type", "sample_id": [ "GSM1195700", "GSM1195701", "GSM1195702", "GSM1195703" ], "type": "genotype/variation", "id": "GDS5389_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5389", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5389.tab", "compression": "gz" } ], [ [ "GDS5390.tab" ], { "title": "Whey protein hydrolysate diet effect on exercised epitrochlearis muscle", "description": "Analysis of epitrochlearis muscle from males exercised for 2hr then fed a whey protein hydrolysate (WPH) diet or a control diet with an identical amino acid composition (AAM). Results provide insight into the molecular basis of the greater post-exercise muscle protein synthesis in the WPH group.", "type": "Expression profiling by array", "pubmed_id": "24598469", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE49486", "order": "none", "update_date": "Jan 16 2015", "subsets": [ { "dataset_id": "GDS5390", "description": "carbohydrate-whey protein hydrolysate diet", "sample_id": [ "GSM1200063", "GSM1200064", "GSM1200065", "GSM1200066" ], "type": "protocol", "id": "GDS5390_1" }, { "dataset_id": "GDS5390", "description": "carbohydrate-amino acid diet", "sample_id": [ "GSM1200059", "GSM1200060", "GSM1200061", "GSM1200062" ], "type": "protocol", "id": "GDS5390_2" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5390", "version": 1.0, "instances": "8", "variables": 24214, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5390.tab", "compression": "gz" } ], [ [ "GDS5391.tab" ], { "title": "Protein tyrosine kinase PTK7 knockdown effect on lung adenocarcinoma cell lines", "description": "Analysis of lung adenocarcinoma (ADC) cell lines NCI-H1299 and NCI-H2009 depleted for protein tyrosine kinase PTK7 using two independent shRNAs (shPTK7-1 and shPTK7-2). Results provide insight into the role of PTK7 in lung ADCs.", "type": "Expression profiling by array", "pubmed_id": "24654231", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE50138", "order": "none", "update_date": "Jan 22 2015", "subsets": [ { "dataset_id": "GDS5391", "description": "NCI-H1299", "sample_id": [ "GSM1214636", "GSM1214637", "GSM1214638", "GSM1214639" ], "type": "cell line", "id": "GDS5391_1" }, { "dataset_id": "GDS5391", "description": "NCI-H2009", "sample_id": [ "GSM1214640", "GSM1214641", "GSM1214642", "GSM1214643" ], "type": "cell line", "id": "GDS5391_2" }, { "dataset_id": "GDS5391", "description": "control shGFP", "sample_id": [ "GSM1214636", "GSM1214640" ], "type": "protocol", "id": "GDS5391_3" }, { "dataset_id": "GDS5391", "description": "control shLUC", "sample_id": [ "GSM1214637", "GSM1214641" ], "type": "protocol", "id": "GDS5391_4" }, { "dataset_id": "GDS5391", "description": "shPTK7-1 (PTK7 knockdown)", "sample_id": [ "GSM1214638", "GSM1214642" ], "type": "protocol", "id": "GDS5391_5" }, { "dataset_id": "GDS5391", "description": "shPTK7-2 (PTK7 knockdown)", "sample_id": [ "GSM1214639", "GSM1214643" ], "type": "protocol", "id": "GDS5391_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5391", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5391.tab", "compression": "gz" } ], [ [ "GDS5392.tab" ], { "title": "Chronic plaque psoriasis: lesional and non-lesional skin punch biopsies", "description": "Analysis of 6 mm punch biopsies of lesional and non-lesional (uninvolved) skin from four chronic plaque psoriasis patients. Chronic plaque psoriasis is an inflammatory skin disease. Results provide insight into molecular mechanisms underlying this inflammatory skin disorder.", "type": "Expression profiling by array", "pubmed_id": "22479649", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE50790", "order": "none", "update_date": "Jan 30 2015", "subsets": [ { "dataset_id": "GDS5392", "description": "lesional skin biopsy", "sample_id": [ "GSM1229341", "GSM1229344", "GSM1229345", "GSM1229347" ], "type": "tissue", "id": "GDS5392_1" }, { "dataset_id": "GDS5392", "description": "non-lesional skin biopsy", "sample_id": [ "GSM1229342", "GSM1229343", "GSM1229346", "GSM1229348" ], "type": "tissue", "id": "GDS5392_2" }, { "dataset_id": "GDS5392", "description": "patient 6690", "sample_id": [ "GSM1229341", "GSM1229342" ], "type": "individual", "id": "GDS5392_3" }, { "dataset_id": "GDS5392", "description": "patient 7450", "sample_id": [ "GSM1229343", "GSM1229344" ], "type": "individual", "id": "GDS5392_4" }, { "dataset_id": "GDS5392", "description": "patient 7912", "sample_id": [ "GSM1229345", "GSM1229346" ], "type": "individual", "id": "GDS5392_5" }, { "dataset_id": "GDS5392", "description": "patient 8470", "sample_id": [ "GSM1229347", "GSM1229348" ], "type": "individual", "id": "GDS5392_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5392", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5392.tab", "compression": "gz" } ], [ [ "GDS5393.tab" ], { "title": "Bipolar disorder and response to lithium: blood", "description": "Analysis of peripheral blood from patients with bipolar disorder before and 1 month after lithium treatment. Response of patients to lithium assessed after 6 months. Results identify a gene expression signature for the response to lithium treatment in patients with bipolar disorder.", "type": "Expression profiling by array", "pubmed_id": "23670706", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "120", "value_type": "transformed count", "reference_series": "GSE45484", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5393", "description": "control", "sample_id": [ "GSM1105438", "GSM1105440", "GSM1105442", "GSM1105443", "GSM1105444", "GSM1105445", "GSM1105447", "GSM1105449", "GSM1105467", "GSM1105469", "GSM1105470", "GSM1105471", "GSM1105472", "GSM1105473", "GSM1105474", "GSM1105475", "GSM1105476", "GSM1105477", "GSM1105478", "GSM1105480", "GSM1105486", "GSM1105487", "GSM1105488", "GSM1105489", "GSM1105490", "GSM1105491", "GSM1105492", "GSM1105493", "GSM1105495", "GSM1105497", "GSM1105498", "GSM1105499", "GSM1105500", "GSM1105501", "GSM1105506", "GSM1105508", "GSM1105510", "GSM1105511", "GSM1105512", "GSM1105513", "GSM1105514", "GSM1105516", "GSM1105518", "GSM1105520", "GSM1105522", "GSM1105524", "GSM1105530", "GSM1105532", "GSM1105534", "GSM1105535", "GSM1105536", "GSM1105537", "GSM1105538", "GSM1105539", "GSM1105540", "GSM1105541", "GSM1105542", "GSM1105544", "GSM1105551", "GSM1105553", "GSM1105554", "GSM1105555", "GSM1105556", "GSM1105557" ], "type": "agent", "id": "GDS5393_1" }, { "dataset_id": "GDS5393", "description": "lithium", "sample_id": [ "GSM1105439", "GSM1105441", "GSM1105446", "GSM1105448", "GSM1105450", "GSM1105451", "GSM1105452", "GSM1105453", "GSM1105454", "GSM1105455", "GSM1105456", "GSM1105457", "GSM1105458", "GSM1105459", "GSM1105460", "GSM1105461", "GSM1105462", "GSM1105463", "GSM1105464", "GSM1105465", "GSM1105466", "GSM1105468", "GSM1105479", "GSM1105481", "GSM1105482", "GSM1105483", "GSM1105484", "GSM1105485", "GSM1105494", "GSM1105496", "GSM1105502", "GSM1105503", "GSM1105504", "GSM1105505", "GSM1105507", "GSM1105509", "GSM1105515", "GSM1105517", "GSM1105519", "GSM1105521", "GSM1105523", "GSM1105525", "GSM1105526", "GSM1105527", "GSM1105528", "GSM1105529", "GSM1105531", "GSM1105533", "GSM1105543", "GSM1105545", "GSM1105546", "GSM1105547", "GSM1105548", "GSM1105549", "GSM1105550", "GSM1105552" ], "type": "agent", "id": "GDS5393_2" }, { "dataset_id": "GDS5393", "description": "non-responder", "sample_id": [ "GSM1105438", "GSM1105439", "GSM1105440", "GSM1105441", "GSM1105442", "GSM1105443", "GSM1105444", "GSM1105445", "GSM1105446", "GSM1105447", "GSM1105448", "GSM1105449", "GSM1105455", "GSM1105457", "GSM1105458", "GSM1105459", "GSM1105460", "GSM1105461", "GSM1105462", "GSM1105463", "GSM1105464", "GSM1105465", "GSM1105467", "GSM1105469", "GSM1105470", "GSM1105471", "GSM1105472", "GSM1105473", "GSM1105474", "GSM1105475", "GSM1105476", "GSM1105477", "GSM1105482", "GSM1105483", "GSM1105484", "GSM1105485", "GSM1105486", "GSM1105487", "GSM1105488", "GSM1105489", "GSM1105490", "GSM1105491", "GSM1105492", "GSM1105493", "GSM1105494", "GSM1105495", "GSM1105496", "GSM1105497", "GSM1105498", "GSM1105499", "GSM1105500", "GSM1105501", "GSM1105503", "GSM1105505", "GSM1105506", "GSM1105507", "GSM1105508", "GSM1105509", "GSM1105511", "GSM1105513", "GSM1105514", "GSM1105516", "GSM1105518", "GSM1105519", "GSM1105520", "GSM1105521", "GSM1105522", "GSM1105524", "GSM1105526", "GSM1105527", "GSM1105528", "GSM1105529", "GSM1105531", "GSM1105533", "GSM1105534", "GSM1105535", "GSM1105536", "GSM1105537", "GSM1105538", "GSM1105540", "GSM1105542", "GSM1105543", "GSM1105544", "GSM1105545", "GSM1105546", "GSM1105547", "GSM1105548", "GSM1105549", "GSM1105551", "GSM1105553", "GSM1105554", "GSM1105555", "GSM1105556", "GSM1105557" ], "type": "other", "id": "GDS5393_3" }, { "dataset_id": "GDS5393", "description": "responder", "sample_id": [ "GSM1105450", "GSM1105451", "GSM1105452", "GSM1105453", "GSM1105454", "GSM1105456", "GSM1105466", "GSM1105468", "GSM1105478", "GSM1105479", "GSM1105480", "GSM1105481", "GSM1105502", "GSM1105504", "GSM1105510", "GSM1105512", "GSM1105515", "GSM1105517", "GSM1105523", "GSM1105525", "GSM1105530", "GSM1105532", "GSM1105539", "GSM1105541", "GSM1105550", "GSM1105552" ], "type": "other", "id": "GDS5393_4" }, { "dataset_id": "GDS5393", "description": "baseline", "sample_id": [ "GSM1105438", "GSM1105439", "GSM1105442", "GSM1105443", "GSM1105446", "GSM1105447", "GSM1105450", "GSM1105451", "GSM1105454", "GSM1105455", "GSM1105458", "GSM1105459", "GSM1105462", "GSM1105463", "GSM1105466", "GSM1105467", "GSM1105470", "GSM1105471", "GSM1105474", "GSM1105475", "GSM1105478", "GSM1105479", "GSM1105482", "GSM1105483", "GSM1105486", "GSM1105487", "GSM1105490", "GSM1105491", "GSM1105494", "GSM1105495", "GSM1105498", "GSM1105499", "GSM1105502", "GSM1105503", "GSM1105506", "GSM1105507", "GSM1105510", "GSM1105511", "GSM1105514", "GSM1105515", "GSM1105518", "GSM1105519", "GSM1105522", "GSM1105523", "GSM1105526", "GSM1105527", "GSM1105530", "GSM1105531", "GSM1105534", "GSM1105535", "GSM1105538", "GSM1105539", "GSM1105542", "GSM1105543", "GSM1105546", "GSM1105547", "GSM1105550", "GSM1105551", "GSM1105554", "GSM1105555" ], "type": "time", "id": "GDS5393_5" }, { "dataset_id": "GDS5393", "description": "1 month", "sample_id": [ "GSM1105440", "GSM1105441", "GSM1105444", "GSM1105445", "GSM1105448", "GSM1105449", "GSM1105452", "GSM1105453", "GSM1105456", "GSM1105457", "GSM1105460", "GSM1105461", "GSM1105464", "GSM1105465", "GSM1105468", "GSM1105469", "GSM1105472", "GSM1105473", "GSM1105476", "GSM1105477", "GSM1105480", "GSM1105481", "GSM1105484", "GSM1105485", "GSM1105488", "GSM1105489", "GSM1105492", "GSM1105493", "GSM1105496", "GSM1105497", "GSM1105500", "GSM1105501", "GSM1105504", "GSM1105505", "GSM1105508", "GSM1105509", "GSM1105512", "GSM1105513", "GSM1105516", "GSM1105517", "GSM1105520", "GSM1105521", "GSM1105524", "GSM1105525", "GSM1105528", "GSM1105529", "GSM1105532", "GSM1105533", "GSM1105536", "GSM1105537", "GSM1105540", "GSM1105541", "GSM1105544", "GSM1105545", "GSM1105548", "GSM1105549", "GSM1105552", "GSM1105553", "GSM1105556", "GSM1105557" ], "type": "time", "id": "GDS5393_6" }, { "dataset_id": "GDS5393", "description": "Li+OPT_1", "sample_id": [ "GSM1105439", "GSM1105441" ], "type": "individual", "id": "GDS5393_7" }, { "dataset_id": "GDS5393", "description": "Li+OPT_10", "sample_id": [ "GSM1105463", "GSM1105465" ], "type": "individual", "id": "GDS5393_8" }, { "dataset_id": "GDS5393", "description": "Li+OPT_11", "sample_id": [ "GSM1105466", "GSM1105468" ], "type": "individual", "id": "GDS5393_9" }, { "dataset_id": "GDS5393", "description": "Li+OPT_12", "sample_id": [ "GSM1105479", "GSM1105481" ], "type": "individual", "id": "GDS5393_10" }, { "dataset_id": "GDS5393", "description": "Li+OPT_13", "sample_id": [ "GSM1105482", "GSM1105484" ], "type": "individual", "id": "GDS5393_11" }, { "dataset_id": "GDS5393", "description": "Li+OPT_14", "sample_id": [ "GSM1105483", "GSM1105485" ], "type": "individual", "id": "GDS5393_12" }, { "dataset_id": "GDS5393", "description": "Li+OPT_15", "sample_id": [ "GSM1105494", "GSM1105496" ], "type": "individual", "id": "GDS5393_13" }, { "dataset_id": "GDS5393", "description": "Li+OPT_16", "sample_id": [ "GSM1105502", "GSM1105504" ], "type": "individual", "id": "GDS5393_14" }, { "dataset_id": "GDS5393", "description": "Li+OPT_17", "sample_id": [ "GSM1105503", "GSM1105505" ], "type": "individual", "id": "GDS5393_15" }, { "dataset_id": "GDS5393", "description": "Li+OPT_18", "sample_id": [ "GSM1105507", "GSM1105509" ], "type": "individual", "id": "GDS5393_16" }, { "dataset_id": "GDS5393", "description": "Li+OPT_19", "sample_id": [ "GSM1105515", "GSM1105517" ], "type": "individual", "id": "GDS5393_17" }, { "dataset_id": "GDS5393", "description": "Li+OPT_2", "sample_id": [ "GSM1105446", "GSM1105448" ], "type": "individual", "id": "GDS5393_18" }, { "dataset_id": "GDS5393", "description": "Li+OPT_20", "sample_id": [ "GSM1105519", "GSM1105521" ], "type": "individual", "id": "GDS5393_19" }, { "dataset_id": "GDS5393", "description": "Li+OPT_21", "sample_id": [ "GSM1105523", "GSM1105525" ], "type": "individual", "id": "GDS5393_20" }, { "dataset_id": "GDS5393", "description": "Li+OPT_22", "sample_id": [ "GSM1105526", "GSM1105528" ], "type": "individual", "id": "GDS5393_21" }, { "dataset_id": "GDS5393", "description": "Li+OPT_23", "sample_id": [ "GSM1105527", "GSM1105529" ], "type": "individual", "id": "GDS5393_22" }, { "dataset_id": "GDS5393", "description": "Li+OPT_24", "sample_id": [ "GSM1105531", "GSM1105533" ], "type": "individual", "id": "GDS5393_23" }, { "dataset_id": "GDS5393", "description": "Li+OPT_25", "sample_id": [ "GSM1105543", "GSM1105545" ], "type": "individual", "id": "GDS5393_24" }, { "dataset_id": "GDS5393", "description": "Li+OPT_26", "sample_id": [ "GSM1105546", "GSM1105548" ], "type": "individual", "id": "GDS5393_25" }, { "dataset_id": "GDS5393", "description": "Li+OPT_27", "sample_id": [ "GSM1105547", "GSM1105549" ], "type": "individual", "id": "GDS5393_26" }, { "dataset_id": "GDS5393", "description": "Li+OPT_28", "sample_id": [ "GSM1105550", "GSM1105552" ], "type": "individual", "id": "GDS5393_27" }, { "dataset_id": "GDS5393", "description": "Li+OPT_3", "sample_id": [ "GSM1105450", "GSM1105452" ], "type": "individual", "id": "GDS5393_28" }, { "dataset_id": "GDS5393", "description": "Li+OPT_4", "sample_id": [ "GSM1105451", "GSM1105453" ], "type": "individual", "id": "GDS5393_29" }, { "dataset_id": "GDS5393", "description": "Li+OPT_5", "sample_id": [ "GSM1105454", "GSM1105456" ], "type": "individual", "id": "GDS5393_30" }, { "dataset_id": "GDS5393", "description": "Li+OPT_6", "sample_id": [ "GSM1105455", "GSM1105457" ], "type": "individual", "id": "GDS5393_31" }, { "dataset_id": "GDS5393", "description": "Li+OPT_7", "sample_id": [ "GSM1105458", "GSM1105460" ], "type": "individual", "id": "GDS5393_32" }, { "dataset_id": "GDS5393", "description": "Li+OPT_8", "sample_id": [ "GSM1105459", "GSM1105461" ], "type": "individual", "id": "GDS5393_33" }, { "dataset_id": "GDS5393", "description": "Li+OPT_9", "sample_id": [ "GSM1105462", "GSM1105464" ], "type": "individual", "id": "GDS5393_34" }, { "dataset_id": "GDS5393", "description": "OPT_1", "sample_id": [ "GSM1105438", "GSM1105440" ], "type": "individual", "id": "GDS5393_35" }, { "dataset_id": "GDS5393", "description": "OPT_10", "sample_id": [ "GSM1105478", "GSM1105480" ], "type": "individual", "id": "GDS5393_36" }, { "dataset_id": "GDS5393", "description": "OPT_11", "sample_id": [ "GSM1105486", "GSM1105488" ], "type": "individual", "id": "GDS5393_37" }, { "dataset_id": "GDS5393", "description": "OPT_12", "sample_id": [ "GSM1105487", "GSM1105489" ], "type": "individual", "id": "GDS5393_38" }, { "dataset_id": "GDS5393", "description": "OPT_13", "sample_id": [ "GSM1105490", "GSM1105492" ], "type": "individual", "id": "GDS5393_39" }, { "dataset_id": "GDS5393", "description": "OPT_14", "sample_id": [ "GSM1105491", "GSM1105493" ], "type": "individual", "id": "GDS5393_40" }, { "dataset_id": "GDS5393", "description": "OPT_15", "sample_id": [ "GSM1105495", "GSM1105497" ], "type": "individual", "id": "GDS5393_41" }, { "dataset_id": "GDS5393", "description": "OPT_16", "sample_id": [ "GSM1105498", "GSM1105500" ], "type": "individual", "id": "GDS5393_42" }, { "dataset_id": "GDS5393", "description": "OPT_17", "sample_id": [ "GSM1105499", "GSM1105501" ], "type": "individual", "id": "GDS5393_43" }, { "dataset_id": "GDS5393", "description": "OPT_18", "sample_id": [ "GSM1105506", "GSM1105508" ], "type": "individual", "id": "GDS5393_44" }, { "dataset_id": "GDS5393", "description": "OPT_19", "sample_id": [ "GSM1105510", "GSM1105512" ], "type": "individual", "id": "GDS5393_45" }, { "dataset_id": "GDS5393", "description": "OPT_2", "sample_id": [ "GSM1105442", "GSM1105444" ], "type": "individual", "id": "GDS5393_46" }, { "dataset_id": "GDS5393", "description": "OPT_20", "sample_id": [ "GSM1105511", "GSM1105513" ], "type": "individual", "id": "GDS5393_47" }, { "dataset_id": "GDS5393", "description": "OPT_21", "sample_id": [ "GSM1105514", "GSM1105516" ], "type": "individual", "id": "GDS5393_48" }, { "dataset_id": "GDS5393", "description": "OPT_22", "sample_id": [ "GSM1105518", "GSM1105520" ], "type": "individual", "id": "GDS5393_49" }, { "dataset_id": "GDS5393", "description": "OPT_23", "sample_id": [ "GSM1105522", "GSM1105524" ], "type": "individual", "id": "GDS5393_50" }, { "dataset_id": "GDS5393", "description": "OPT_24", "sample_id": [ "GSM1105530", "GSM1105532" ], "type": "individual", "id": "GDS5393_51" }, { "dataset_id": "GDS5393", "description": "OPT_25", "sample_id": [ "GSM1105534", "GSM1105536" ], "type": "individual", "id": "GDS5393_52" }, { "dataset_id": "GDS5393", "description": "OPT_26", "sample_id": [ "GSM1105535", "GSM1105537" ], "type": "individual", "id": "GDS5393_53" }, { "dataset_id": "GDS5393", "description": "OPT_27", "sample_id": [ "GSM1105538", "GSM1105540" ], "type": "individual", "id": "GDS5393_54" }, { "dataset_id": "GDS5393", "description": "OPT_28", "sample_id": [ "GSM1105539", "GSM1105541" ], "type": "individual", "id": "GDS5393_55" }, { "dataset_id": "GDS5393", "description": "OPT_29", "sample_id": [ "GSM1105542", "GSM1105544" ], "type": "individual", "id": "GDS5393_56" }, { "dataset_id": "GDS5393", "description": "OPT_3", "sample_id": [ "GSM1105443", "GSM1105445" ], "type": "individual", "id": "GDS5393_57" }, { "dataset_id": "GDS5393", "description": "OPT_30", "sample_id": [ "GSM1105551", "GSM1105553" ], "type": "individual", "id": "GDS5393_58" }, { "dataset_id": "GDS5393", "description": "OPT_31", "sample_id": [ "GSM1105554", "GSM1105556" ], "type": "individual", "id": "GDS5393_59" }, { "dataset_id": "GDS5393", "description": "OPT_32", "sample_id": [ "GSM1105555", "GSM1105557" ], "type": "individual", "id": "GDS5393_60" }, { "dataset_id": "GDS5393", "description": "OPT_4", "sample_id": [ "GSM1105447", "GSM1105449" ], "type": "individual", "id": "GDS5393_61" }, { "dataset_id": "GDS5393", "description": "OPT_5", "sample_id": [ "GSM1105467", "GSM1105469" ], "type": "individual", "id": "GDS5393_62" }, { "dataset_id": "GDS5393", "description": "OPT_6", "sample_id": [ "GSM1105470", "GSM1105472" ], "type": "individual", "id": "GDS5393_63" }, { "dataset_id": "GDS5393", "description": "OPT_7", "sample_id": [ "GSM1105471", "GSM1105473" ], "type": "individual", "id": "GDS5393_64" }, { "dataset_id": "GDS5393", "description": "OPT_8", "sample_id": [ "GSM1105474", "GSM1105476" ], "type": "individual", "id": "GDS5393_65" }, { "dataset_id": "GDS5393", "description": "OPT_9", "sample_id": [ "GSM1105475", "GSM1105477" ], "type": "individual", "id": "GDS5393_66" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5393", "version": 1.0, "instances": "120", "variables": 37611, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5393.tab", "compression": "gz" } ], [ [ "GDS5396.tab" ], { "title": "TGF-beta receptor type 1 gene Alk5 deficiency effect on embryonic tongue bud", "description": "Analysis of tongue bud collected from E13.5 embryos with conditional inactivation of Alk5 in cranial neural crest cells (CNCCs). The Alk5 gene encodes TGF-\u03b2 type 1 receptor. Results provide insight into the role of Alk5-mediated TGF-\u03b2 signaling in CNCCs on early tongue myogenesis.", "type": "Expression profiling by array", "pubmed_id": "24912677", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE52358", "order": "none", "update_date": "Feb 11 2015", "subsets": [ { "dataset_id": "GDS5396", "description": "Wnt1-Cre; Alk5(fl/fl)", "sample_id": [ "GSM1263866", "GSM1263867", "GSM1263868", "GSM1263869" ], "type": "genotype/variation", "id": "GDS5396_1" }, { "dataset_id": "GDS5396", "description": "control", "sample_id": [ "GSM1263862", "GSM1263863", "GSM1263864", "GSM1263865" ], "type": "genotype/variation", "id": "GDS5396_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5396", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5396.tab", "compression": "gz" } ], [ [ "GDS5397.tab" ], { "title": "Embryonic kidney cell line response to depletion of H1.2 linker histone, Cul4A E3 ubiquitin ligase or PAF1 elongation complex", "description": "Analysis of 293T cells upon depletion of H1.2, Cul4A or PAF1. Results provide insight into the molecular basis of cooperative functions of H1.2, Cul4A, and PAF1 in regulating gene transcription.", "type": "Expression profiling by array", "pubmed_id": "24360965", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE52544", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5397", "description": "H1.2 depletion", "sample_id": [ "GSM1269586", "GSM1269590" ], "type": "genotype/variation", "id": "GDS5397_1" }, { "dataset_id": "GDS5397", "description": "Cul4A depletion", "sample_id": [ "GSM1269587", "GSM1269591" ], "type": "genotype/variation", "id": "GDS5397_2" }, { "dataset_id": "GDS5397", "description": "PAF1 depletion", "sample_id": [ "GSM1269588", "GSM1269592" ], "type": "genotype/variation", "id": "GDS5397_3" }, { "dataset_id": "GDS5397", "description": "control", "sample_id": [ "GSM1269585", "GSM1269589" ], "type": "genotype/variation", "id": "GDS5397_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5397", "version": 1.0, "instances": "8", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5397.tab", "compression": "gz" } ], [ [ "GDS5398.tab" ], { "title": "RANKL effect on osteoclastogenic cell line", "description": "Analysis of H10 osteoclastogenic cells following treatment with soluble recombinant receptor activator of nuclear factor-kB ligand to induce osteoclastogenesis. H10 cells derived from RAW264.7 macrophages. Results provide insight into the molecular mechanisms regulating osteoclastogenesis.", "type": "Expression profiling by array", "pubmed_id": "23593435", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE43811", "order": "none", "update_date": "Jan 15 2015", "subsets": [ { "dataset_id": "GDS5398", "description": "osteoclastogenic cell line", "sample_id": [ "GSM1071626", "GSM1071627", "GSM1071628" ], "type": "cell line", "id": "GDS5398_1" }, { "dataset_id": "GDS5398", "description": "control", "sample_id": [ "GSM1071629", "GSM1071630", "GSM1071631" ], "type": "cell line", "id": "GDS5398_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5398", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5398.tab", "compression": "gz" } ], [ [ "GDS5399.tab" ], { "title": "RNA-binding protein Musashi-2 deficiency effect on LSK hematopoietic stem cells", "description": "Analysis of Musashi-2 (Msi2)-deficient hematopoietic stem and progenitor cells (HSPCs; LSK, Lineageloc-kit+, Sca+). The Musashi (Msi) RNA-binding protein family regulates stem cell function. Results provide insight into the role of Msi2 in HSCs.", "type": "Expression profiling by array", "pubmed_id": "24395885", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE53385", "order": "none", "update_date": "Feb 09 2015", "subsets": [ { "dataset_id": "GDS5399", "description": "wild type", "sample_id": [ "GSM1290591", "GSM1290592", "GSM1290593", "GSM1290594" ], "type": "genotype/variation", "id": "GDS5399_1" }, { "dataset_id": "GDS5399", "description": "Msi2 knockout", "sample_id": [ "GSM1290595", "GSM1290596", "GSM1290597", "GSM1290598" ], "type": "genotype/variation", "id": "GDS5399_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5399", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5399.tab", "compression": "gz" } ], [ [ "GDS5400.tab" ], { "title": "DPP4A overexpression effect on fibroblast cell line", "description": "Analysis 3T3 fibroblast cells overexpressing the pluripotency factor DPPA4. DPPA4 encodes a DNA binding SAP domain-containing protein. Results provide insight into the role of DPPA4 in oncogenesis.", "type": "Expression profiling by array", "pubmed_id": "23963736", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE58709", "order": "none", "update_date": "Nov 22 2014", "subsets": [ { "dataset_id": "GDS5400", "description": "vector control", "sample_id": [ "GSM1417185", "GSM1417186" ], "type": "agent", "id": "GDS5400_1" }, { "dataset_id": "GDS5400", "description": "DPPA4", "sample_id": [ "GSM1417187", "GSM1417188" ], "type": "agent", "id": "GDS5400_2" }, { "dataset_id": "GDS5400", "description": "c-Myc positive control", "sample_id": [ "GSM1417189", "GSM1417190" ], "type": "agent", "id": "GDS5400_3" }, { "dataset_id": "GDS5400", "description": "SV40 positive control", "sample_id": [ "GSM1417191", "GSM1417192" ], "type": "agent", "id": "GDS5400_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5400", "version": 1.0, "instances": "8", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5400.tab", "compression": "gz" } ], [ [ "GDS5401.tab" ], { "title": "Rheumatoid arthritis and osteoarthritis: synovial tissues (Berlin dataset)", "description": "Analysis of synovial tissues from patients with rheumatoid arthritis or osteoarthritis. Results used to generate rule-based classifiers to distinguish patients with rheumatoid arthritis from those with osteoarthritis.", "type": "Expression profiling by array", "pubmed_id": "24690414", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE55235", "order": "none", "update_date": "Nov 22 2014", "subsets": [ { "dataset_id": "GDS5401", "description": "normal", "sample_id": [ "GSM1332201", "GSM1332202", "GSM1332203", "GSM1332204", "GSM1332205", "GSM1332206", "GSM1332207", "GSM1332208", "GSM1332209", "GSM1332210" ], "type": "disease state", "id": "GDS5401_1" }, { "dataset_id": "GDS5401", "description": "osteoarthritis", "sample_id": [ "GSM1332211", "GSM1332212", "GSM1332213", "GSM1332214", "GSM1332215", "GSM1332216", "GSM1332217", "GSM1332218", "GSM1332219", "GSM1332220" ], "type": "disease state", "id": "GDS5401_2" }, { "dataset_id": "GDS5401", "description": "rheumatoid arthritis", "sample_id": [ "GSM1332221", "GSM1332222", "GSM1332223", "GSM1332224", "GSM1332225", "GSM1332226", "GSM1332227", "GSM1332228", "GSM1332229", "GSM1332230" ], "type": "disease state", "id": "GDS5401_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5401", "version": 1.0, "instances": "30", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5401.tab", "compression": "gz" } ], [ [ "GDS5402.tab" ], { "title": "Rheumatoid arthritis and osteoarthritis: synovial tissues (Leipzig dataset)", "description": "Analysis of synovial tissues from patients with rheumatoid arthritis or osteoarthritis. Results used to generate rule-based classifiers to distinguish patients with rheumatoid arthritis from those with osteoarthritis.", "type": "Expression profiling by array", "pubmed_id": "24690414", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE55584", "order": "none", "update_date": "Nov 22 2014", "subsets": [ { "dataset_id": "GDS5402", "description": "rheumatoid arthritis", "sample_id": [ "GSM1339618", "GSM1339619", "GSM1339620", "GSM1339621", "GSM1339622", "GSM1339623", "GSM1339624", "GSM1339625", "GSM1339626", "GSM1339627" ], "type": "disease state", "id": "GDS5402_1" }, { "dataset_id": "GDS5402", "description": "osteoarthritis", "sample_id": [ "GSM1339628", "GSM1339629", "GSM1339630", "GSM1339631", "GSM1339632", "GSM1339633" ], "type": "disease state", "id": "GDS5402_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5402", "version": 1.0, "instances": "16", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5402.tab", "compression": "gz" } ], [ [ "GDS5403.tab" ], { "title": "Rheumatoid arthritis and osteoarthritis: synovial tissues (Jena dataset)", "description": "Analysis of synovial tissues from patients with rheumatoid arthritis or osteoarthritis. Results used to generate rule-based classifiers to distinguish patients with rheumatoid arthritis from those with osteoarthritis.", "type": "Expression profiling by array", "pubmed_id": "24690414", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "count", "reference_series": "GSE55457", "order": "none", "update_date": "Nov 22 2014", "subsets": [ { "dataset_id": "GDS5403", "description": "normal", "sample_id": [ "GSM1337304", "GSM1337305", "GSM1337306", "GSM1337307", "GSM1337308", "GSM1337309", "GSM1337310", "GSM1337311", "GSM1337312", "GSM1337313" ], "type": "disease state", "id": "GDS5403_1" }, { "dataset_id": "GDS5403", "description": "rheumatoid arthritis", "sample_id": [ "GSM1337314", "GSM1337315", "GSM1337316", "GSM1337317", "GSM1337318", "GSM1337319", "GSM1337320", "GSM1337321", "GSM1337322", "GSM1337323", "GSM1337324", "GSM1337325", "GSM1337326" ], "type": "disease state", "id": "GDS5403_2" }, { "dataset_id": "GDS5403", "description": "osteoarthritis", "sample_id": [ "GSM1337327", "GSM1337328", "GSM1337329", "GSM1337330", "GSM1337331", "GSM1337332", "GSM1337333", "GSM1337334", "GSM1337335", "GSM1337336" ], "type": "disease state", "id": "GDS5403_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5403", "version": 1.0, "instances": "33", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5403.tab", "compression": "gz" } ], [ [ "GDS5404.tab" ], { "title": "Suberoylanilide hydroxamic acid effect on SKOV-3 ovarian cancer cell line: time course", "description": "Analysis of SKOV-3 cells treated with histone deacetylase inhibitor SAHA for up to 24hr. SKOV-3 is a cell line model of homologous recombination (HR)-proficient epithelial ovarian cancer (EOC). Results provide insight into the effect of SAHA on HR DNA repair pathway genes in HR-proficient EOCs.", "type": "Expression profiling by array", "pubmed_id": "24631446", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE53603", "order": "none", "update_date": "Feb 11 2015", "subsets": [ { "dataset_id": "GDS5404", "description": "hour 6", "sample_id": [ "GSM1296648", "GSM1296649", "GSM1296646", "GSM1296647" ], "type": "time", "id": "GDS5404_1" }, { "dataset_id": "GDS5404", "description": "hour 24", "sample_id": [ "GSM1296652", "GSM1296653", "GSM1296650", "GSM1296651" ], "type": "time", "id": "GDS5404_2" }, { "dataset_id": "GDS5404", "description": "suberoylanilide hydroxamic acid", "sample_id": [ "GSM1296652", "GSM1296653", "GSM1296648", "GSM1296649" ], "type": "agent", "id": "GDS5404_3" }, { "dataset_id": "GDS5404", "description": "control", "sample_id": [ "GSM1296650", "GSM1296651", "GSM1296646", "GSM1296647" ], "type": "agent", "id": "GDS5404_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5404", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5404.tab", "compression": "gz" } ], [ [ "GDS5405.tab" ], { "title": "Imatinib mesylate effect on patient peripheral T-cell lymphomas, not otherwise specified (PTCL/NOS) cells", "description": "Analysis of patient PTCL/NOS cells treated with imatinib mesylate (1uM, 6h). PTCL/NOS tumors are characterized by aberrant expression of platelet-derived growth factor receptor \u03b1 (PDGFRA). Results provide insight into the molecular effects of inhibiting PDGFRA signaling by imatinib.", "type": "Expression profiling by array", "pubmed_id": "24480986", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE53633", "order": "none", "update_date": "Mar 11 2015", "subsets": [ { "dataset_id": "GDS5405", "description": "imatinib mesylate", "sample_id": [ "GSM1297532", "GSM1297533" ], "type": "agent", "id": "GDS5405_1" }, { "dataset_id": "GDS5405", "description": "control", "sample_id": [ "GSM1297534", "GSM1297535" ], "type": "agent", "id": "GDS5405_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5405", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5405.tab", "compression": "gz" } ], [ [ "GDS5406.tab" ], { "title": "Imatinib mesylate effect on EOL-1 eosinophilic leukemia cell line", "description": "Analysis of EOL-1 cells treated with imatinib mesylate (1uM, 6h). EOL-1 cells carry the platelet derived growth factor receptor \u03b1 (PDGFRA)/FIP1L1 fusion and exhibit constitutive PDGFRA activation. Results provide insight into the molecular effects of inhibiting PDGFRA signaling by imatinib.", "type": "Expression profiling by array", "pubmed_id": "24480986", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE53633", "order": "none", "update_date": "Mar 11 2015", "subsets": [ { "dataset_id": "GDS5406", "description": "imatinib mesylate", "sample_id": [ "GSM1297528", "GSM1297529" ], "type": "agent", "id": "GDS5406_1" }, { "dataset_id": "GDS5406", "description": "control", "sample_id": [ "GSM1297530", "GSM1297531" ], "type": "agent", "id": "GDS5406_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5406", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5406.tab", "compression": "gz" } ], [ [ "GDS5407.tab" ], { "title": "CD40 activation effect on CD19-positive B cells", "description": "Analysis of peripheral blood-purified CD19-positive B cells activated with CD40. CD40 is a potent activation stimulus for the induction of B cell-mediated antigen presentation and cytokine production. Results provide insight into molecular mechanisms underlying B cell activation via CD40.", "type": "Expression profiling by array", "pubmed_id": "25311809", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE54017", "order": "none", "update_date": "Mar 11 2015", "subsets": [ { "dataset_id": "GDS5407", "description": "CD40 activated", "sample_id": [ "GSM1305903", "GSM1305905", "GSM1305907", "GSM1305909" ], "type": "protocol", "id": "GDS5407_1" }, { "dataset_id": "GDS5407", "description": "unactivated", "sample_id": [ "GSM1305902", "GSM1305904", "GSM1305906", "GSM1305908" ], "type": "protocol", "id": "GDS5407_2" }, { "dataset_id": "GDS5407", "description": "BC4869", "sample_id": [ "GSM1305902", "GSM1305903" ], "type": "individual", "id": "GDS5407_3" }, { "dataset_id": "GDS5407", "description": "BC4870", "sample_id": [ "GSM1305904", "GSM1305905" ], "type": "individual", "id": "GDS5407_4" }, { "dataset_id": "GDS5407", "description": "BC4884", "sample_id": [ "GSM1305906", "GSM1305907" ], "type": "individual", "id": "GDS5407_5" }, { "dataset_id": "GDS5407", "description": "BC4885", "sample_id": [ "GSM1305908", "GSM1305909" ], "type": "individual", "id": "GDS5407_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS5407", "version": 1.0, "instances": "8", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5407.tab", "compression": "gz" } ], [ [ "GDS5408.tab" ], { "title": "H1 and H9 embryonic stem cell lines undergoing differentiation", "description": "Analysis of undifferentiated H1 and H9 embryonic stem cell (ESC) lines and their differentiated embryoid bodies (EB). Result provide insight into those genes consistently altered during ESC differentiation.", "type": "Expression profiling by array", "pubmed_id": "24519983", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE54186", "order": "none", "update_date": "Mar 12 2015", "subsets": [ { "dataset_id": "GDS5408", "description": "H1 ESC", "sample_id": [ "GSM1309417", "GSM1309418", "GSM1309419", "GSM1309420" ], "type": "cell line", "id": "GDS5408_1" }, { "dataset_id": "GDS5408", "description": "H9 ESC", "sample_id": [ "GSM1309421", "GSM1309422", "GSM1309423", "GSM1309424" ], "type": "cell line", "id": "GDS5408_2" }, { "dataset_id": "GDS5408", "description": "undifferentiated", "sample_id": [ "GSM1309417", "GSM1309418", "GSM1309421", "GSM1309422" ], "type": "protocol", "id": "GDS5408_3" }, { "dataset_id": "GDS5408", "description": "differentiated", "sample_id": [ "GSM1309419", "GSM1309420", "GSM1309423", "GSM1309424" ], "type": "protocol", "id": "GDS5408_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5408", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5408.tab", "compression": "gz" } ], [ [ "GDS5409.tab" ], { "title": "Akt inhibitor MK2206 effect on influenza H1N1 infection of non-small cell lung cancer line", "description": "Analysis of non-small cell lung cancer NCI-H1666 cells treated with MK2206 and infected with influenza A/Helsinki/P14/2009(pH1N1). MK2206 is an inhibitor of the serine/threonine protein kinase Akt (protein kinase B). Results provide insight into the role of Akt signaling in pH1N1 infection.", "type": "Expression profiling by array", "pubmed_id": "24752266", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE54293", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5409", "description": "Influenza A/Helsinki/P14/2009(pH1N1)", "sample_id": [ "GSM1312278", "GSM1312279", "GSM1312280", "GSM1312281" ], "type": "infection", "id": "GDS5409_1" }, { "dataset_id": "GDS5409", "description": "not infected", "sample_id": [ "GSM1312274", "GSM1312275", "GSM1312276", "GSM1312277" ], "type": "infection", "id": "GDS5409_2" }, { "dataset_id": "GDS5409", "description": "MK2206", "sample_id": [ "GSM1312276", "GSM1312277", "GSM1312280", "GSM1312281" ], "type": "agent", "id": "GDS5409_3" }, { "dataset_id": "GDS5409", "description": "untreated", "sample_id": [ "GSM1312274", "GSM1312275", "GSM1312278", "GSM1312279" ], "type": "agent", "id": "GDS5409_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5409", "version": 1.0, "instances": "8", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5409.tab", "compression": "gz" } ], [ [ "GDS5410.tab" ], { "title": "Non-small cell lung cancer H460-derived cancer stem cell differentiation", "description": "Analysis of cancer stem cells (CSCs) isolated from non-small cell lung cancer cell line H460 and allowed to redifferentiate under adherent conditions in serum-containing media for up to 24hr. Results provide insight into molecular mechanisms underlying the differentiation of H460-derived CSCs.", "type": "Expression profiling by array", "pubmed_id": "24961511", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE54712", "order": "none", "update_date": "Mar 17 2015", "subsets": [ { "dataset_id": "GDS5410", "description": "hour 0", "sample_id": [ "GSM1322678", "GSM1322679" ], "type": "time", "id": "GDS5410_1" }, { "dataset_id": "GDS5410", "description": "hour 3", "sample_id": [ "GSM1322680", "GSM1322681" ], "type": "time", "id": "GDS5410_2" }, { "dataset_id": "GDS5410", "description": "hour 9", "sample_id": [ "GSM1322682", "GSM1322683" ], "type": "time", "id": "GDS5410_3" }, { "dataset_id": "GDS5410", "description": "hour 24", "sample_id": [ "GSM1322684", "GSM1322685" ], "type": "time", "id": "GDS5410_4" }, { "dataset_id": "GDS5410", "description": "undifferentiated", "sample_id": [ "GSM1322678", "GSM1322679" ], "type": "growth protocol", "id": "GDS5410_5" }, { "dataset_id": "GDS5410", "description": "differentiated", "sample_id": [ "GSM1322680", "GSM1322681", "GSM1322682", "GSM1322683", "GSM1322684", "GSM1322685" ], "type": "growth protocol", "id": "GDS5410_6" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5410", "version": 1.0, "instances": "8", "variables": 29584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5410.tab", "compression": "gz" } ], [ [ "GDS5411.tab" ], { "title": "Helicobacter pylori infection: corpus stomach biopsies", "description": "Analysis of stomach biopsies at different stages of Helicobacter pylori (HB) infection. Many gastric cancers believed caused by chronic HB infection and atrophic corpus gastritis predisposes to gastric cancer development. Results provide insight into mechanisms underlying atrophic HB infection.", "type": "Expression profiling by array", "pubmed_id": "24119614", "platform": "GPL6255", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "20589", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE27411", "order": "none", "update_date": "Nov 25 2014", "subsets": [ { "dataset_id": "GDS5411", "description": "non-infected", "sample_id": [ "GSM677733", "GSM677747", "GSM677732" ], "type": "disease state", "id": "GDS5411_1" }, { "dataset_id": "GDS5411", "description": "Helicobacter pylori infected without atrophy", "sample_id": [ "GSM677738", "GSM677737", "GSM677739" ], "type": "disease state", "id": "GDS5411_2" }, { "dataset_id": "GDS5411", "description": "Helicobacter pylori infected with atrophy", "sample_id": [ "GSM677745", "GSM677743", "GSM677742" ], "type": "disease state", "id": "GDS5411_3" }, { "dataset_id": "GDS5411", "description": "49", "sample_id": [ "GSM677733" ], "type": "individual", "id": "GDS5411_4" }, { "dataset_id": "GDS5411", "description": "35", "sample_id": [ "GSM677747" ], "type": "individual", "id": "GDS5411_5" }, { "dataset_id": "GDS5411", "description": "23", "sample_id": [ "GSM677732" ], "type": "individual", "id": "GDS5411_6" }, { "dataset_id": "GDS5411", "description": "9", "sample_id": [ "GSM677738" ], "type": "individual", "id": "GDS5411_7" }, { "dataset_id": "GDS5411", "description": "8", "sample_id": [ "GSM677737" ], "type": "individual", "id": "GDS5411_8" }, { "dataset_id": "GDS5411", "description": "30", "sample_id": [ "GSM677739" ], "type": "individual", "id": "GDS5411_9" }, { "dataset_id": "GDS5411", "description": "48", "sample_id": [ "GSM677745" ], "type": "individual", "id": "GDS5411_10" }, { "dataset_id": "GDS5411", "description": "44", "sample_id": [ "GSM677743" ], "type": "individual", "id": "GDS5411_11" }, { "dataset_id": "GDS5411", "description": "22", "sample_id": [ "GSM677742" ], "type": "individual", "id": "GDS5411_12" } ], "taxid": "9606", "genes": 18739, "aggregation_function": "mean", "name": "GDS5411", "version": 1.0, "instances": "9", "variables": 18742, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5411.tab", "compression": "gz" } ], [ [ "GDS5412.tab" ], { "title": "Age effect on respiratory epithelium: distal trachea and carina region", "description": "Analysis of distal trachea and carina region of young (2 month) and old (14 month) C57Bl/6 females. Aging lungs are associated with a variety of structural and pathologic changes. Results provide insight into molecular mechanisms underlying age-related changes in respiratory epithelium.", "type": "Expression profiling by array", "pubmed_id": "24675804", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE55162", "order": "ordered", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5412", "description": "2 months", "sample_id": [ "GSM1330623", "GSM1330624", "GSM1330625", "GSM1330626" ], "type": "age", "id": "GDS5412_1" }, { "dataset_id": "GDS5412", "description": "14 months", "sample_id": [ "GSM1330619", "GSM1330620", "GSM1330621", "GSM1330622" ], "type": "age", "id": "GDS5412_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5412", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5412.tab", "compression": "gz" } ], [ [ "GDS5413.tab" ], { "title": "Core binding factor \u03b2 deficiency effect on bone marrow derived-LSK hematopoietic stem cells", "description": "Analysis of purified Lin-c-kit+Sca1+ LSK cells from Cbf\u03b2- conditional knockout mice. Runx/Cbfb heterodimers play important roles in hematopoietic cell development. Results provide insight into molecular mechanisms by which Cbf\u03b2 regulates cell fate decisions in bone marrow progenitors.", "type": "Expression profiling by array", "pubmed_id": "24677539", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55227", "order": "none", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5413", "description": "control", "sample_id": [ "GSM1331898", "GSM1331899" ], "type": "genotype/variation", "id": "GDS5413_1" }, { "dataset_id": "GDS5413", "description": "Cbfb knockout", "sample_id": [ "GSM1331900", "GSM1331901" ], "type": "genotype/variation", "id": "GDS5413_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5413", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5413.tab", "compression": "gz" } ], [ [ "GDS5414.tab" ], { "title": "Core binding factor \u03b2 deficiency effect on bone marrow derived-granulocyte macrophage progenitor cells", "description": "Analysis of purified Lin-c-kit+Sca1-CD16/32+ GMP cells from Cbf\u03b2-conditional knockout mice. Runx/Cbfb heterodimers play important roles in hematopoietic cell development. Results provide insight into molecular mechanisms by which Cbf\u03b2 regulates cell fate decisions in bone marrow progenitors.", "type": "Expression profiling by array", "pubmed_id": "24677539", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55227", "order": "none", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5414", "description": "control", "sample_id": [ "GSM1331902", "GSM1331903" ], "type": "genotype/variation", "id": "GDS5414_1" }, { "dataset_id": "GDS5414", "description": "Cbfb knockout", "sample_id": [ "GSM1331904", "GSM1331905" ], "type": "genotype/variation", "id": "GDS5414_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5414", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5414.tab", "compression": "gz" } ], [ [ "GDS5415.tab" ], { "title": "Model for Wilms tumor of the kidney: time course", "description": "Analysis of kidney tumors from Lin28a transgenics at 5 weeks and 4 months of age. Overexpression of heterochronic regulator Lin28 during kidney development promotes Wilms tumor formation. Results provide insight into the role of Lin28 in Wilms tumor formation.", "type": "Expression profiling by array", "pubmed_id": "24732380", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE56323", "order": "none", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5415", "description": "Lin28-derived tumor", "sample_id": [ "GSM1359095", "GSM1359097", "GSM1359099", "GSM1359101" ], "type": "disease state", "id": "GDS5415_1" }, { "dataset_id": "GDS5415", "description": "control", "sample_id": [ "GSM1359096", "GSM1359098", "GSM1359100", "GSM1359102" ], "type": "disease state", "id": "GDS5415_2" }, { "dataset_id": "GDS5415", "description": "5 weeks", "sample_id": [ "GSM1359095", "GSM1359096" ], "type": "age", "id": "GDS5415_3" }, { "dataset_id": "GDS5415", "description": "4 months", "sample_id": [ "GSM1359097", "GSM1359098", "GSM1359099", "GSM1359100", "GSM1359101", "GSM1359102" ], "type": "age", "id": "GDS5415_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5415", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5415.tab", "compression": "gz" } ], [ [ "GDS5416.tab" ], { "title": "Supercritical rosemary extract effect on SW620 colon cancer cells: dose response", "description": "Analysis of adenocarcinoma derived-SW620 colon cancer cells treated with supercritical rosemary extract (RE-2) at doses of 30, 60 and 100 \u03bcg/mL. RE contains carnosic acid and carnosol (diterpenes) and essential oils. Results provide insight into the molecular basis of RE's anticancer effects.", "type": "Expression profiling by array", "pubmed_id": "24892299", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE56496", "order": "ordered", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5416", "description": "0 \u03bcg/mL", "sample_id": [ "GSM1362704", "GSM1362700" ], "type": "dose", "id": "GDS5416_1" }, { "dataset_id": "GDS5416", "description": "30 \u03bcg/mL", "sample_id": [ "GSM1362705", "GSM1362701" ], "type": "dose", "id": "GDS5416_2" }, { "dataset_id": "GDS5416", "description": "60 \u03bcg/mL", "sample_id": [ "GSM1362706", "GSM1362702" ], "type": "dose", "id": "GDS5416_3" }, { "dataset_id": "GDS5416", "description": "100 \u03bcg/mL", "sample_id": [ "GSM1362707", "GSM1362703" ], "type": "dose", "id": "GDS5416_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5416", "version": 1.0, "instances": "8", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5416.tab", "compression": "gz" } ], [ [ "GDS5417.tab" ], { "title": "Embryonic lung and brain cortex: endothelial cells", "description": "Analysis of cortical (blood-brain barrier) and lung (non-BBB) endothelial cells FACS-purified from Tie2-GFP embryos at a critical BBB-genesis period (E13.5). Results provide insight into molecular mechanisms involved in BBB formation.", "type": "Expression profiling by array", "pubmed_id": "24828040", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE56777", "order": "none", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5417", "description": "lung", "sample_id": [ "GSM1368929", "GSM1368930", "GSM1368932", "GSM1368934" ], "type": "tissue", "id": "GDS5417_1" }, { "dataset_id": "GDS5417", "description": "cortex", "sample_id": [ "GSM1368928", "GSM1368931", "GSM1368933", "GSM1368935" ], "type": "tissue", "id": "GDS5417_2" }, { "dataset_id": "GDS5417", "description": "sample number: 72", "sample_id": [ "GSM1368929", "GSM1368928" ], "type": "other", "id": "GDS5417_3" }, { "dataset_id": "GDS5417", "description": "sample number: 22", "sample_id": [ "GSM1368930", "GSM1368931" ], "type": "other", "id": "GDS5417_4" }, { "dataset_id": "GDS5417", "description": "sample number: 19", "sample_id": [ "GSM1368933", "GSM1368932" ], "type": "other", "id": "GDS5417_5" }, { "dataset_id": "GDS5417", "description": "sample number: 18", "sample_id": [ "GSM1368934", "GSM1368935" ], "type": "other", "id": "GDS5417_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5417", "version": 1.0, "instances": "8", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5417.tab", "compression": "gz" } ], [ [ "GDS5418.tab" ], { "title": "Glucose effect on steroid receptor coactivator 1 deficient-A549 lung cancer epithelial cell line", "description": "Analysis of highly glycolytic A549 lung cancer cells depleted for steroid receptor coactivator SRC-1 and grown in the absence of glucose. SRC-1 promotes gluconeogenesis and glycemia. Results provide insight into the role of SRC-1 in glycolytic cancer cells undergoing glucose deprivation.", "type": "Expression profiling by array", "pubmed_id": "24438340", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE56843", "order": "none", "update_date": "Mar 18 2015", "subsets": [ { "dataset_id": "GDS5418", "description": "SRC-1 knockdown", "sample_id": [ "GSM1370134", "GSM1370133", "GSM1370136", "GSM1370135" ], "type": "genotype/variation", "id": "GDS5418_1" }, { "dataset_id": "GDS5418", "description": "control", "sample_id": [ "GSM1370129", "GSM1370132", "GSM1370131", "GSM1370130" ], "type": "genotype/variation", "id": "GDS5418_2" }, { "dataset_id": "GDS5418", "description": "with glucose", "sample_id": [ "GSM1370131", "GSM1370132", "GSM1370135", "GSM1370136" ], "type": "protocol", "id": "GDS5418_3" }, { "dataset_id": "GDS5418", "description": "without glucose", "sample_id": [ "GSM1370129", "GSM1370130", "GSM1370133", "GSM1370134" ], "type": "protocol", "id": "GDS5418_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5418", "version": 1.0, "instances": "8", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5418.tab", "compression": "gz" } ], [ [ "GDS5419.tab" ], { "title": "MEK inhibitor PD-0325901 and rapamycin combined treatment effect on malignant peripheral nerve sheath tumor model", "description": "Analysis of malignant peripheral nerve sheath tumors (MPNST) from NPcis animals (carrying Nf1 and p53 mutations) treated with rapamycin, MEK inhibitor PD-0325901, or the combination of rapamycin and PD-0325901. Results provide insight into the molecular mechanisms underlying MPNST pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "24913553", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE57141", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5419", "description": "vehicle", "sample_id": [ "GSM1375898", "GSM1375899" ], "type": "protocol", "id": "GDS5419_1" }, { "dataset_id": "GDS5419", "description": "rapamycin", "sample_id": [ "GSM1375900", "GSM1375901" ], "type": "protocol", "id": "GDS5419_2" }, { "dataset_id": "GDS5419", "description": "PD-0325901", "sample_id": [ "GSM1375902", "GSM1375903" ], "type": "protocol", "id": "GDS5419_3" }, { "dataset_id": "GDS5419", "description": "PD-0325901 + rapamycin", "sample_id": [ "GSM1375904", "GSM1375905" ], "type": "protocol", "id": "GDS5419_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5419", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5419.tab", "compression": "gz" } ], [ [ "GDS5420.tab" ], { "title": "Psoriasis response to brodalumab: dose response and time course", "description": "Analysis of non-lesional and lesional psoriatic skins for up to 43 days following treatment with various doses of brodalumab, a human IgG2 mAb that selectively binds and blocks signaling through IL-17RA. Results provide insight into the molecular effect of blocking IL-17 signaling in psoriatic skin.", "type": "Expression profiling by array", "pubmed_id": "24646743", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "99", "value_type": "count", "reference_series": "GSE53552", "order": "none", "update_date": "Nov 26 2014", "subsets": [ { "dataset_id": "GDS5420", "description": "lesional psoriatic skin", "sample_id": [ "GSM1296034", "GSM1296035", "GSM1296038", "GSM1296041", "GSM1296059", "GSM1296060", "GSM1296063", "GSM1296066", "GSM1296037", "GSM1296039", "GSM1296042", "GSM1296043", "GSM1296044", "GSM1296045", "GSM1296046", "GSM1296047", "GSM1296062", "GSM1296064", "GSM1296067", "GSM1296068", "GSM1296069", "GSM1296070", "GSM1296071", "GSM1296072", "GSM1296024", "GSM1296025", "GSM1296027", "GSM1296028", "GSM1296029", "GSM1296031", "GSM1296032", "GSM1296033", "GSM1296049", "GSM1296050", "GSM1296052", "GSM1296053", "GSM1296054", "GSM1296055", "GSM1296057", "GSM1296058", "GSM1296026", "GSM1296030", "GSM1296036", "GSM1296040", "GSM1296048", "GSM1296051", "GSM1296056", "GSM1296061", "GSM1296065", "GSM1296073", "GSM1296074", "GSM1296076", "GSM1296078", "GSM1296080", "GSM1296082", "GSM1296084", "GSM1296086", "GSM1296088", "GSM1296090", "GSM1296092", "GSM1296094", "GSM1296096", "GSM1296098", "GSM1296099", "GSM1296101", "GSM1296103", "GSM1296105", "GSM1296107", "GSM1296109", "GSM1296111", "GSM1296113", "GSM1296115", "GSM1296117", "GSM1296119", "GSM1296121" ], "type": "tissue", "id": "GDS5420_1" }, { "dataset_id": "GDS5420", "description": "non-lesional skin", "sample_id": [ "GSM1296075", "GSM1296077", "GSM1296079", "GSM1296081", "GSM1296083", "GSM1296085", "GSM1296087", "GSM1296089", "GSM1296091", "GSM1296093", "GSM1296095", "GSM1296097", "GSM1296100", "GSM1296102", "GSM1296104", "GSM1296106", "GSM1296108", "GSM1296110", "GSM1296112", "GSM1296114", "GSM1296116", "GSM1296118", "GSM1296120", "GSM1296122" ], "type": "tissue", "id": "GDS5420_2" }, { "dataset_id": "GDS5420", "description": "baseline", "sample_id": [ "GSM1296074", "GSM1296075", "GSM1296076", "GSM1296077", "GSM1296078", "GSM1296079", "GSM1296080", "GSM1296081", "GSM1296082", "GSM1296083", "GSM1296084", "GSM1296085", "GSM1296086", "GSM1296087", "GSM1296088", "GSM1296089", "GSM1296090", "GSM1296091", "GSM1296092", "GSM1296093", "GSM1296094", "GSM1296095", "GSM1296096", "GSM1296097", "GSM1296098", "GSM1296099", "GSM1296100", "GSM1296101", "GSM1296102", "GSM1296103", "GSM1296104", "GSM1296105", "GSM1296106", "GSM1296107", "GSM1296108", "GSM1296109", "GSM1296110", "GSM1296111", "GSM1296112", "GSM1296113", "GSM1296114", "GSM1296115", "GSM1296116", "GSM1296117", "GSM1296118", "GSM1296119", "GSM1296120", "GSM1296121", "GSM1296122" ], "type": "time", "id": "GDS5420_3" }, { "dataset_id": "GDS5420", "description": "8 d", "sample_id": [ "GSM1296069", "GSM1296070", "GSM1296071", "GSM1296072", "GSM1296073" ], "type": "time", "id": "GDS5420_4" }, { "dataset_id": "GDS5420", "description": "15 d", "sample_id": [ "GSM1296024", "GSM1296025", "GSM1296026", "GSM1296027", "GSM1296028", "GSM1296029", "GSM1296030", "GSM1296031", "GSM1296032", "GSM1296033", "GSM1296034", "GSM1296035", "GSM1296036", "GSM1296037", "GSM1296038", "GSM1296039", "GSM1296040", "GSM1296041", "GSM1296042", "GSM1296043", "GSM1296044", "GSM1296045", "GSM1296046", "GSM1296047", "GSM1296048" ], "type": "time", "id": "GDS5420_5" }, { "dataset_id": "GDS5420", "description": "43 d", "sample_id": [ "GSM1296049", "GSM1296050", "GSM1296051", "GSM1296052", "GSM1296053", "GSM1296054", "GSM1296055", "GSM1296056", "GSM1296057", "GSM1296058", "GSM1296059", "GSM1296060", "GSM1296061", "GSM1296062", "GSM1296063", "GSM1296064", "GSM1296065", "GSM1296066", "GSM1296067", "GSM1296068" ], "type": "time", "id": "GDS5420_6" }, { "dataset_id": "GDS5420", "description": "brodalumab", "sample_id": [ "GSM1296024", "GSM1296025", "GSM1296027", "GSM1296028", "GSM1296029", "GSM1296031", "GSM1296032", "GSM1296033", "GSM1296034", "GSM1296035", "GSM1296037", "GSM1296038", "GSM1296039", "GSM1296041", "GSM1296042", "GSM1296043", "GSM1296044", "GSM1296045", "GSM1296046", "GSM1296047", "GSM1296049", "GSM1296050", "GSM1296052", "GSM1296053", "GSM1296054", "GSM1296055", "GSM1296057", "GSM1296058", "GSM1296059", "GSM1296060", "GSM1296062", "GSM1296063", "GSM1296064", "GSM1296066", "GSM1296067", "GSM1296068", "GSM1296069", "GSM1296070", "GSM1296071", "GSM1296072" ], "type": "agent", "id": "GDS5420_7" }, { "dataset_id": "GDS5420", "description": "placebo", "sample_id": [ "GSM1296026", "GSM1296030", "GSM1296036", "GSM1296040", "GSM1296048", "GSM1296051", "GSM1296056", "GSM1296061", "GSM1296065", "GSM1296073" ], "type": "agent", "id": "GDS5420_8" }, { "dataset_id": "GDS5420", "description": "140 mg brodalumab", "sample_id": [ "GSM1296034", "GSM1296035", "GSM1296038", "GSM1296041", "GSM1296059", "GSM1296060", "GSM1296063", "GSM1296066" ], "type": "dose", "id": "GDS5420_9" }, { "dataset_id": "GDS5420", "description": "350 mg brodalumab", "sample_id": [ "GSM1296037", "GSM1296039", "GSM1296042", "GSM1296043", "GSM1296044", "GSM1296045", "GSM1296046", "GSM1296047", "GSM1296062", "GSM1296064", "GSM1296067", "GSM1296068", "GSM1296069", "GSM1296070", "GSM1296071", "GSM1296072" ], "type": "dose", "id": "GDS5420_10" }, { "dataset_id": "GDS5420", "description": "700 mg brodalumab", "sample_id": [ "GSM1296024", "GSM1296025", "GSM1296027", "GSM1296028", "GSM1296029", "GSM1296031", "GSM1296032", "GSM1296033", "GSM1296049", "GSM1296050", "GSM1296052", "GSM1296053", "GSM1296054", "GSM1296055", "GSM1296057", "GSM1296058" ], "type": "dose", "id": "GDS5420_11" }, { "dataset_id": "GDS5420", "description": "untreated", "sample_id": [ "GSM1296074", "GSM1296075", "GSM1296076", "GSM1296077", "GSM1296078", "GSM1296079", "GSM1296080", "GSM1296081", "GSM1296082", "GSM1296083", "GSM1296084", "GSM1296085", "GSM1296086", "GSM1296087", "GSM1296088", "GSM1296089", "GSM1296090", "GSM1296091", "GSM1296092", "GSM1296093", "GSM1296094", "GSM1296095", "GSM1296096", "GSM1296097", "GSM1296098", "GSM1296099", "GSM1296100", "GSM1296101", "GSM1296102", "GSM1296103", "GSM1296104", "GSM1296105", "GSM1296106", "GSM1296107", "GSM1296108", "GSM1296109", "GSM1296110", "GSM1296111", "GSM1296112", "GSM1296113", "GSM1296114", "GSM1296115", "GSM1296116", "GSM1296117", "GSM1296118", "GSM1296119", "GSM1296120", "GSM1296121", "GSM1296122" ], "type": "agent", "id": "GDS5420_12" }, { "dataset_id": "GDS5420", "description": "n/a", "sample_id": [ "GSM1296026", "GSM1296030", "GSM1296036", "GSM1296040", "GSM1296048", "GSM1296051", "GSM1296056", "GSM1296061", "GSM1296065", "GSM1296073", "GSM1296074", "GSM1296075", "GSM1296076", "GSM1296077", "GSM1296078", "GSM1296079", "GSM1296080", "GSM1296081", "GSM1296082", "GSM1296083", "GSM1296084", "GSM1296085", "GSM1296086", "GSM1296087", "GSM1296088", "GSM1296089", "GSM1296090", "GSM1296091", "GSM1296092", "GSM1296093", "GSM1296094", "GSM1296095", "GSM1296096", "GSM1296097", "GSM1296098", "GSM1296099", "GSM1296100", "GSM1296101", "GSM1296102", "GSM1296103", "GSM1296104", "GSM1296105", "GSM1296106", "GSM1296107", "GSM1296108", "GSM1296109", "GSM1296110", "GSM1296111", "GSM1296112", "GSM1296113", "GSM1296114", "GSM1296115", "GSM1296116", "GSM1296117", "GSM1296118", "GSM1296119", "GSM1296120", "GSM1296121", "GSM1296122" ], "type": "dose", "id": "GDS5420_13" }, { "dataset_id": "GDS5420", "description": "A", "sample_id": [ "GSM1296034", "GSM1296059", "GSM1296094", "GSM1296095" ], "type": "individual", "id": "GDS5420_14" }, { "dataset_id": "GDS5420", "description": "B", "sample_id": [ "GSM1296047", "GSM1296072", "GSM1296119", "GSM1296120" ], "type": "individual", "id": "GDS5420_15" }, { "dataset_id": "GDS5420", "description": "C", "sample_id": [ "GSM1296025", "GSM1296050", "GSM1296076", "GSM1296077" ], "type": "individual", "id": "GDS5420_16" }, { "dataset_id": "GDS5420", "description": "D", "sample_id": [ "GSM1296033", "GSM1296057", "GSM1296092", "GSM1296093" ], "type": "individual", "id": "GDS5420_17" }, { "dataset_id": "GDS5420", "description": "E", "sample_id": [ "GSM1296039", "GSM1296064", "GSM1296103", "GSM1296104" ], "type": "individual", "id": "GDS5420_18" }, { "dataset_id": "GDS5420", "description": "F", "sample_id": [ "GSM1296026", "GSM1296051", "GSM1296078", "GSM1296079" ], "type": "individual", "id": "GDS5420_19" }, { "dataset_id": "GDS5420", "description": "G", "sample_id": [ "GSM1296041", "GSM1296066", "GSM1296107", "GSM1296108" ], "type": "individual", "id": "GDS5420_20" }, { "dataset_id": "GDS5420", "description": "H", "sample_id": [ "GSM1296042", "GSM1296067", "GSM1296109", "GSM1296110" ], "type": "individual", "id": "GDS5420_21" }, { "dataset_id": "GDS5420", "description": "I", "sample_id": [ "GSM1296027", "GSM1296052", "GSM1296080", "GSM1296081" ], "type": "individual", "id": "GDS5420_22" }, { "dataset_id": "GDS5420", "description": "J", "sample_id": [ "GSM1296032", "GSM1296054", "GSM1296090", "GSM1296091" ], "type": "individual", "id": "GDS5420_23" }, { "dataset_id": "GDS5420", "description": "K", "sample_id": [ "GSM1296024", "GSM1296049", "GSM1296074", "GSM1296075" ], "type": "individual", "id": "GDS5420_24" }, { "dataset_id": "GDS5420", "description": "L", "sample_id": [ "GSM1296043", "GSM1296069", "GSM1296111", "GSM1296112" ], "type": "individual", "id": "GDS5420_25" }, { "dataset_id": "GDS5420", "description": "M", "sample_id": [ "GSM1296037", "GSM1296062", "GSM1296099", "GSM1296100" ], "type": "individual", "id": "GDS5420_26" }, { "dataset_id": "GDS5420", "description": "O", "sample_id": [ "GSM1296030", "GSM1296056", "GSM1296086", "GSM1296087" ], "type": "individual", "id": "GDS5420_27" }, { "dataset_id": "GDS5420", "description": "P", "sample_id": [ "GSM1296046", "GSM1296071", "GSM1296117", "GSM1296118" ], "type": "individual", "id": "GDS5420_28" }, { "dataset_id": "GDS5420", "description": "Q", "sample_id": [ "GSM1296044", "GSM1296068", "GSM1296113", "GSM1296114" ], "type": "individual", "id": "GDS5420_29" }, { "dataset_id": "GDS5420", "description": "R", "sample_id": [ "GSM1296035", "GSM1296060", "GSM1296096", "GSM1296097" ], "type": "individual", "id": "GDS5420_30" }, { "dataset_id": "GDS5420", "description": "S", "sample_id": [ "GSM1296040", "GSM1296065", "GSM1296105", "GSM1296106" ], "type": "individual", "id": "GDS5420_31" }, { "dataset_id": "GDS5420", "description": "T", "sample_id": [ "GSM1296036", "GSM1296061", "GSM1296098" ], "type": "individual", "id": "GDS5420_32" }, { "dataset_id": "GDS5420", "description": "U", "sample_id": [ "GSM1296038", "GSM1296063", "GSM1296101", "GSM1296102" ], "type": "individual", "id": "GDS5420_33" }, { "dataset_id": "GDS5420", "description": "V", "sample_id": [ "GSM1296048", "GSM1296073", "GSM1296121", "GSM1296122" ], "type": "individual", "id": "GDS5420_34" }, { "dataset_id": "GDS5420", "description": "W", "sample_id": [ "GSM1296031", "GSM1296055", "GSM1296088", "GSM1296089" ], "type": "individual", "id": "GDS5420_35" }, { "dataset_id": "GDS5420", "description": "X", "sample_id": [ "GSM1296028", "GSM1296053", "GSM1296082", "GSM1296083" ], "type": "individual", "id": "GDS5420_36" }, { "dataset_id": "GDS5420", "description": "Y", "sample_id": [ "GSM1296045", "GSM1296070", "GSM1296115", "GSM1296116" ], "type": "individual", "id": "GDS5420_37" }, { "dataset_id": "GDS5420", "description": "Z", "sample_id": [ "GSM1296029", "GSM1296058", "GSM1296084", "GSM1296085" ], "type": "individual", "id": "GDS5420_38" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5420", "version": 1.0, "instances": "99", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5420.tab", "compression": "gz" } ], [ [ "GDS5421.tab" ], { "title": "Transcription factor E2-2 haplodeficiency effect on systemic lupus erythematosus model: splenocytes", "description": "Analysis of splenocytes from WT, B6.Sle1.Sle3 (lupus mice) and B6.Sle1.Sle3 Tcf4+/\u2212 (Sle/het) mice haplodeficient for the transcription factor E2-2 (Tcf4). E2-2 is a specific regulator of plasmacytoid dendritic cell (pDC) development. Results provide insight into role of pDC in SLE pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "25180061", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE57324", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5421", "description": "wild type", "sample_id": [ "GSM1379548", "GSM1379549" ], "type": "genotype/variation", "id": "GDS5421_1" }, { "dataset_id": "GDS5421", "description": "Sle1.3", "sample_id": [ "GSM1379550", "GSM1379551", "GSM1379552" ], "type": "genotype/variation", "id": "GDS5421_2" }, { "dataset_id": "GDS5421", "description": "Sle1.3/E2-2het", "sample_id": [ "GSM1379553", "GSM1379554", "GSM1379555" ], "type": "genotype/variation", "id": "GDS5421_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5421", "version": 1.0, "instances": "8", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5421.tab", "compression": "gz" } ], [ [ "GDS5422.tab" ], { "title": "Receptor activator of NF-\u03baB ligand effect on bone marrow-derived macrophage cells: time course", "description": "Analysis of bone marrow-derived macrophages (BMMs) collected from 6-8 week old C57BL/6 animals and treated with receptor activator of NF-\u03baB ligand (RANKL) for up to 3 days. Results provide insight into the molecular mechanisms underlying RANKL-mediated induction of osteoclastogenesis.", "type": "Expression profiling by array", "pubmed_id": "25023277", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE57468", "order": "ordered", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5422", "description": "control", "sample_id": [ "GSM1383260", "GSM1383262" ], "type": "agent", "id": "GDS5422_1" }, { "dataset_id": "GDS5422", "description": "RANKL", "sample_id": [ "GSM1387103", "GSM1387105", "GSM1387104", "GSM1387106", "GSM1383261", "GSM1383263" ], "type": "agent", "id": "GDS5422_2" }, { "dataset_id": "GDS5422", "description": "day 0", "sample_id": [ "GSM1383260", "GSM1383262" ], "type": "time", "id": "GDS5422_3" }, { "dataset_id": "GDS5422", "description": "day 1", "sample_id": [ "GSM1387103", "GSM1387105" ], "type": "time", "id": "GDS5422_4" }, { "dataset_id": "GDS5422", "description": "day 2", "sample_id": [ "GSM1387104", "GSM1387106" ], "type": "time", "id": "GDS5422_5" }, { "dataset_id": "GDS5422", "description": "day 3", "sample_id": [ "GSM1383261", "GSM1383263" ], "type": "time", "id": "GDS5422_6" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5422", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5422.tab", "compression": "gz" } ], [ [ "GDS5423.tab" ], { "title": "Circadian modulators SHARP1/SHARP2 deficiency effect on cortex: time course", "description": "Analysis of cortex from SHARP1/2 double null mutants at ZT4 (wake phase) and ZT16 (sleep phase). bHLH transcription factors SHARP1 (DEC2, BHLHE41) and SHARP2 (DEC1, BHLHE40) are circadian modulators. Results provide insight into the molecular contributions of SHARP1/SHARP2 to the sleep-wake cycle.", "type": "Expression profiling by array", "pubmed_id": "25340473", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE59941", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5423", "description": "ZT4", "sample_id": [ "GSM1462548", "GSM1462549", "GSM1462545", "GSM1462544" ], "type": "time", "id": "GDS5423_1" }, { "dataset_id": "GDS5423", "description": "ZT16", "sample_id": [ "GSM1462546", "GSM1462547", "GSM1462550", "GSM1462551" ], "type": "time", "id": "GDS5423_2" }, { "dataset_id": "GDS5423", "description": "wild type", "sample_id": [ "GSM1462544", "GSM1462545", "GSM1462546", "GSM1462547" ], "type": "genotype/variation", "id": "GDS5423_3" }, { "dataset_id": "GDS5423", "description": "SHARP1/2 double null mutant", "sample_id": [ "GSM1462548", "GSM1462549", "GSM1462550", "GSM1462551" ], "type": "genotype/variation", "id": "GDS5423_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS5423", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5423.tab", "compression": "gz" } ], [ [ "GDS5424.tab" ], { "title": "Commensal bacteria colonization effect on gnotobiotic model of food allergy: colonic epithelial cells", "description": "Analysis of intestinal epithelial cells (IECs) from gnotobiotic animals selectively colonized with Bacteroides uniformis or Clostridia. Results provide insight into the role of microbial interactions with IECs in protecting against sensitization to food allergens.", "type": "Expression profiling by array", "pubmed_id": "25157157", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE60039", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5424", "description": "germ-free", "sample_id": [ "GSM1464087", "GSM1464090" ], "type": "protocol", "id": "GDS5424_1" }, { "dataset_id": "GDS5424", "description": "Clostridia-colonized", "sample_id": [ "GSM1464089", "GSM1464092", "GSM1464094" ], "type": "protocol", "id": "GDS5424_2" }, { "dataset_id": "GDS5424", "description": "Bacteroides-uniformis colonized", "sample_id": [ "GSM1464088", "GSM1464091", "GSM1464093" ], "type": "protocol", "id": "GDS5424_3" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5424", "version": 1.0, "instances": "8", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5424.tab", "compression": "gz" } ], [ [ "GDS5425.tab" ], { "title": "Monoacylglycerol acyltransferase 1 deficiency effect on high-fat diet fed mice: liver", "description": "Analysis of liver from diet-induced obese males depleted for monoacylglycerol acyltransferase 1 (Mogat1) via intraperitoneal injections of antisense oligonucleotide directed against Mogat1. Results provide insight into the role of Mogat1 in the development of nonalcoholic steatohepatitis (NASH).", "type": "Expression profiling by array", "pubmed_id": "25213859", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE60349", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5425", "description": "control", "sample_id": [ "GSM1474150", "GSM1474151", "GSM1474152", "GSM1474153" ], "type": "genotype/variation", "id": "GDS5425_1" }, { "dataset_id": "GDS5425", "description": "Mogat-1 knockout", "sample_id": [ "GSM1474154", "GSM1474155", "GSM1474156", "GSM1474157" ], "type": "genotype/variation", "id": "GDS5425_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5425", "version": 1.0, "instances": "8", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5425.tab", "compression": "gz" } ], [ [ "GDS5426.tab" ], { "title": "Hutchinson Gilford Progeria Syndrome cell line response to oncogenic challenge", "description": "Analysis of skin fibroblasts from Hutchinson Gilford Progeria Syndrome (HGPS) patients challenged by retroviral introduction of telomerase reverse transcriptase (TERT), V12-HRAS and SV40 large and small T antigens. Results provide insight into molecular basis of transformation resistance in HGPS.", "type": "Expression profiling by array", "pubmed_id": "25284786", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE60518", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5426", "description": "Hutchinson Gilford Progeria Syndrome", "sample_id": [ "GSM1481580", "GSM1481581", "GSM1481582", "GSM1481583" ], "type": "disease state", "id": "GDS5426_1" }, { "dataset_id": "GDS5426", "description": "control", "sample_id": [ "GSM1481576", "GSM1481577", "GSM1481578", "GSM1481579" ], "type": "disease state", "id": "GDS5426_2" }, { "dataset_id": "GDS5426", "description": "TERT, V12-HRAS, SV40 T antigens transformed", "sample_id": [ "GSM1481579", "GSM1481577", "GSM1481583", "GSM1481581" ], "type": "protocol", "id": "GDS5426_3" }, { "dataset_id": "GDS5426", "description": "TERT transformed", "sample_id": [ "GSM1481578", "GSM1481576", "GSM1481582", "GSM1481580" ], "type": "protocol", "id": "GDS5426_4" }, { "dataset_id": "GDS5426", "description": "patient 1", "sample_id": [ "GSM1481580", "GSM1481581" ], "type": "individual", "id": "GDS5426_5" }, { "dataset_id": "GDS5426", "description": "patient 2", "sample_id": [ "GSM1481582", "GSM1481583" ], "type": "individual", "id": "GDS5426_6" }, { "dataset_id": "GDS5426", "description": "individual 1", "sample_id": [ "GSM1481576", "GSM1481577" ], "type": "individual", "id": "GDS5426_7" }, { "dataset_id": "GDS5426", "description": "individual 2", "sample_id": [ "GSM1481578", "GSM1481579" ], "type": "individual", "id": "GDS5426_8" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5426", "version": 1.0, "instances": "8", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5426.tab", "compression": "gz" } ], [ [ "GDS5427.tab" ], { "title": "Osteoarthritic acetabular labrum 3-D culture", "description": "Analysis of osteoarthritic labrum cells cultured for 7 days in a 3-dimensional alginate bead system. The acetabular labrum is a fibrocartilaginous structure that seals the hip joint. Results provide insight into hip OA-associated molecular changes in acetabular labrum cells.", "type": "Expression profiling by array", "pubmed_id": "25371314", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE60762", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5427", "description": "osteoarthritic", "sample_id": [ "GSM1487536", "GSM1487537", "GSM1487538", "GSM1487539", "GSM1487540" ], "type": "disease state", "id": "GDS5427_1" }, { "dataset_id": "GDS5427", "description": "healthy", "sample_id": [ "GSM1487541", "GSM1487542", "GSM1487543" ], "type": "disease state", "id": "GDS5427_2" }, { "dataset_id": "GDS5427", "description": "patient D", "sample_id": [ "GSM1487536" ], "type": "individual", "id": "GDS5427_3" }, { "dataset_id": "GDS5427", "description": "patient E", "sample_id": [ "GSM1487537" ], "type": "individual", "id": "GDS5427_4" }, { "dataset_id": "GDS5427", "description": "patient G", "sample_id": [ "GSM1487538" ], "type": "individual", "id": "GDS5427_5" }, { "dataset_id": "GDS5427", "description": "patient H", "sample_id": [ "GSM1487539" ], "type": "individual", "id": "GDS5427_6" }, { "dataset_id": "GDS5427", "description": "patient I", "sample_id": [ "GSM1487540" ], "type": "individual", "id": "GDS5427_7" }, { "dataset_id": "GDS5427", "description": "patient L", "sample_id": [ "GSM1487541" ], "type": "individual", "id": "GDS5427_8" }, { "dataset_id": "GDS5427", "description": "patient Q", "sample_id": [ "GSM1487542" ], "type": "individual", "id": "GDS5427_9" }, { "dataset_id": "GDS5427", "description": "patient R", "sample_id": [ "GSM1487543" ], "type": "individual", "id": "GDS5427_10" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5427", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5427.tab", "compression": "gz" } ], [ [ "GDS5428.tab" ], { "title": "CD40 activation effect on DBC1-deficient splenic B cells", "description": "Analysis of DBC1-knockout splenic B cells following anti-CD40 activation. The deleted in breast cancer 1 (DBC1) gene was initially identified as part of the 8p22 chromosome region that is deleted in breast cancer. Results provide insight into the role of DBC1 in B cell function.", "type": "Expression profiling by array", "pubmed_id": "25362179", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE61029", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5428", "description": "DBC1 knockout", "sample_id": [ "GSM1495688", "GSM1495686", "GSM1495684", "GSM1495682" ], "type": "genotype/variation", "id": "GDS5428_1" }, { "dataset_id": "GDS5428", "description": "wild type", "sample_id": [ "GSM1495687", "GSM1495685", "GSM1495683", "GSM1495681" ], "type": "genotype/variation", "id": "GDS5428_2" }, { "dataset_id": "GDS5428", "description": "anti-CD40 activated", "sample_id": [ "GSM1495686", "GSM1495685" ], "type": "protocol", "id": "GDS5428_3" }, { "dataset_id": "GDS5428", "description": "anti-IgM activated", "sample_id": [ "GSM1495684", "GSM1495683" ], "type": "protocol", "id": "GDS5428_4" }, { "dataset_id": "GDS5428", "description": "LPS activated", "sample_id": [ "GSM1495688", "GSM1495687" ], "type": "protocol", "id": "GDS5428_5" }, { "dataset_id": "GDS5428", "description": "control", "sample_id": [ "GSM1495682", "GSM1495681" ], "type": "protocol", "id": "GDS5428_6" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5428", "version": 1.0, "instances": "8", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5428.tab", "compression": "gz" } ], [ [ "GDS5429.tab" ], { "title": "Embryonic development of colon", "description": "Analysis of colon from normal C57BL/6 embryos from E13.5 to E18.5 and from adult (eight week post-natal). Results provide insight into molecular mechanisms underlying the embryonic development of colon.", "type": "Expression profiling by array", "pubmed_id": "24260186", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE38831", "order": "ordered", "update_date": "Mar 09 2015", "subsets": [ { "dataset_id": "GDS5429", "description": "embryonic day 13.5", "sample_id": [ "GSM950404" ], "type": "development stage", "id": "GDS5429_1" }, { "dataset_id": "GDS5429", "description": "embryonic day 14.5", "sample_id": [ "GSM950405" ], "type": "development stage", "id": "GDS5429_2" }, { "dataset_id": "GDS5429", "description": "embryonic day 15.5", "sample_id": [ "GSM950406" ], "type": "development stage", "id": "GDS5429_3" }, { "dataset_id": "GDS5429", "description": "embryonic day 16.5", "sample_id": [ "GSM950407" ], "type": "development stage", "id": "GDS5429_4" }, { "dataset_id": "GDS5429", "description": "embryonic day 17.5", "sample_id": [ "GSM950408" ], "type": "development stage", "id": "GDS5429_5" }, { "dataset_id": "GDS5429", "description": "embryonic day 18.5", "sample_id": [ "GSM950409" ], "type": "development stage", "id": "GDS5429_6" }, { "dataset_id": "GDS5429", "description": "8 week post-natal adult", "sample_id": [ "GSM950410" ], "type": "development stage", "id": "GDS5429_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5429", "version": 1.0, "instances": "7", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5429.tab", "compression": "gz" } ], [ [ "GDS5430.tab" ], { "title": "Ethanol effect on lymphoblastoid cell lines from alcoholics", "description": "Analysis of lymphoblastoid cell lines (LCLs), obtained from alcoholics, after treatment with ethanol in vitro. Results provide insight into the feasibility of using LCLs to study the molecular consequences of exposure to alcohol.", "type": "Expression profiling by array", "pubmed_id": "25129674", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "84", "value_type": "count", "reference_series": "GSE52553", "order": "none", "update_date": "Dec 04 2014", "subsets": [ { "dataset_id": "GDS5430", "description": "ethanol", "sample_id": [ "GSM1269645", "GSM1269647", "GSM1269649", "GSM1269651", "GSM1269653", "GSM1269655", "GSM1269657", "GSM1269659", "GSM1269661", "GSM1269663", "GSM1269665", "GSM1269667", "GSM1269669", "GSM1269671", "GSM1269673", "GSM1269675", "GSM1269677", "GSM1269679", "GSM1269681", "GSM1269683", "GSM1269685", "GSM1269687", "GSM1269689", "GSM1269691", "GSM1269693", "GSM1269695", "GSM1269697", "GSM1269699", "GSM1269701", "GSM1269703", "GSM1269705", "GSM1269707", "GSM1269709", "GSM1269711", "GSM1269713", "GSM1269715", "GSM1269717", "GSM1269719", "GSM1269721", "GSM1269723", "GSM1269725", "GSM1269727" ], "type": "agent", "id": "GDS5430_1" }, { "dataset_id": "GDS5430", "description": "untreated", "sample_id": [ "GSM1269644", "GSM1269646", "GSM1269648", "GSM1269650", "GSM1269652", "GSM1269654", "GSM1269656", "GSM1269658", "GSM1269660", "GSM1269662", "GSM1269664", "GSM1269666", "GSM1269668", "GSM1269670", "GSM1269672", "GSM1269674", "GSM1269676", "GSM1269678", "GSM1269680", "GSM1269682", "GSM1269684", "GSM1269686", "GSM1269688", "GSM1269690", "GSM1269692", "GSM1269694", "GSM1269696", "GSM1269698", "GSM1269700", "GSM1269702", "GSM1269704", "GSM1269706", "GSM1269708", "GSM1269710", "GSM1269712", "GSM1269714", "GSM1269716", "GSM1269718", "GSM1269720", "GSM1269722", "GSM1269724", "GSM1269726" ], "type": "agent", "id": "GDS5430_2" }, { "dataset_id": "GDS5430", "description": "alcoholism", "sample_id": [ "GSM1269645", "GSM1269647", "GSM1269653", "GSM1269655", "GSM1269661", "GSM1269663", "GSM1269669", "GSM1269671", "GSM1269677", "GSM1269679", "GSM1269685", "GSM1269691", "GSM1269693", "GSM1269699", "GSM1269701", "GSM1269707", "GSM1269709", "GSM1269715", "GSM1269717", "GSM1269721", "GSM1269723", "GSM1269644", "GSM1269646", "GSM1269652", "GSM1269654", "GSM1269660", "GSM1269662", "GSM1269668", "GSM1269670", "GSM1269676", "GSM1269678", "GSM1269684", "GSM1269690", "GSM1269692", "GSM1269698", "GSM1269700", "GSM1269706", "GSM1269708", "GSM1269714", "GSM1269716", "GSM1269720", "GSM1269722" ], "type": "disease state", "id": "GDS5430_3" }, { "dataset_id": "GDS5430", "description": "control", "sample_id": [ "GSM1269649", "GSM1269651", "GSM1269657", "GSM1269659", "GSM1269665", "GSM1269667", "GSM1269673", "GSM1269675", "GSM1269681", "GSM1269683", "GSM1269687", "GSM1269689", "GSM1269695", "GSM1269697", "GSM1269703", "GSM1269705", "GSM1269711", "GSM1269713", "GSM1269719", "GSM1269725", "GSM1269727", "GSM1269648", "GSM1269650", "GSM1269656", "GSM1269658", "GSM1269664", "GSM1269666", "GSM1269672", "GSM1269674", "GSM1269680", "GSM1269682", "GSM1269686", "GSM1269688", "GSM1269694", "GSM1269696", "GSM1269702", "GSM1269704", "GSM1269710", "GSM1269712", "GSM1269718", "GSM1269724", "GSM1269726" ], "type": "disease state", "id": "GDS5430_4" }, { "dataset_id": "GDS5430", "description": "male", "sample_id": [ "GSM1269675", "GSM1269674", "GSM1269719", "GSM1269718", "GSM1269689", "GSM1269688", "GSM1269667", "GSM1269666", "GSM1269727", "GSM1269726", "GSM1269697", "GSM1269696", "GSM1269683", "GSM1269682", "GSM1269725", "GSM1269724", "GSM1269713", "GSM1269712", "GSM1269651", "GSM1269650", "GSM1269705", "GSM1269704", "GSM1269659", "GSM1269658", "GSM1269655", "GSM1269654", "GSM1269679", "GSM1269678", "GSM1269715", "GSM1269714", "GSM1269709", "GSM1269708", "GSM1269663", "GSM1269662", "GSM1269723", "GSM1269722", "GSM1269721", "GSM1269720", "GSM1269701", "GSM1269700", "GSM1269717", "GSM1269716", "GSM1269647", "GSM1269646", "GSM1269671", "GSM1269670", "GSM1269693", "GSM1269692" ], "type": "gender", "id": "GDS5430_5" }, { "dataset_id": "GDS5430", "description": "female", "sample_id": [ "GSM1269687", "GSM1269686", "GSM1269703", "GSM1269702", "GSM1269681", "GSM1269680", "GSM1269665", "GSM1269664", "GSM1269657", "GSM1269656", "GSM1269649", "GSM1269648", "GSM1269711", "GSM1269710", "GSM1269673", "GSM1269672", "GSM1269695", "GSM1269694", "GSM1269677", "GSM1269676", "GSM1269653", "GSM1269652", "GSM1269645", "GSM1269644", "GSM1269691", "GSM1269690", "GSM1269669", "GSM1269668", "GSM1269661", "GSM1269660", "GSM1269699", "GSM1269698", "GSM1269707", "GSM1269706", "GSM1269685", "GSM1269684" ], "type": "gender", "id": "GDS5430_6" }, { "dataset_id": "GDS5430", "description": "37", "sample_id": [ "GSM1269644", "GSM1269645" ], "type": "individual", "id": "GDS5430_7" }, { "dataset_id": "GDS5430", "description": "27", "sample_id": [ "GSM1269646", "GSM1269647" ], "type": "individual", "id": "GDS5430_8" }, { "dataset_id": "GDS5430", "description": "18", "sample_id": [ "GSM1269648", "GSM1269649" ], "type": "individual", "id": "GDS5430_9" }, { "dataset_id": "GDS5430", "description": "1", "sample_id": [ "GSM1269650", "GSM1269651" ], "type": "individual", "id": "GDS5430_10" }, { "dataset_id": "GDS5430", "description": "43", "sample_id": [ "GSM1269652", "GSM1269653" ], "type": "individual", "id": "GDS5430_11" }, { "dataset_id": "GDS5430", "description": "8", "sample_id": [ "GSM1269654", "GSM1269655" ], "type": "individual", "id": "GDS5430_12" }, { "dataset_id": "GDS5430", "description": "19", "sample_id": [ "GSM1269656", "GSM1269657" ], "type": "individual", "id": "GDS5430_13" }, { "dataset_id": "GDS5430", "description": "12", "sample_id": [ "GSM1269658", "GSM1269659" ], "type": "individual", "id": "GDS5430_14" }, { "dataset_id": "GDS5430", "description": "20", "sample_id": [ "GSM1269660", "GSM1269661" ], "type": "individual", "id": "GDS5430_15" }, { "dataset_id": "GDS5430", "description": "42", "sample_id": [ "GSM1269662", "GSM1269663" ], "type": "individual", "id": "GDS5430_16" }, { "dataset_id": "GDS5430", "description": "29", "sample_id": [ "GSM1269664", "GSM1269665" ], "type": "individual", "id": "GDS5430_17" }, { "dataset_id": "GDS5430", "description": "34", "sample_id": [ "GSM1269666", "GSM1269667" ], "type": "individual", "id": "GDS5430_18" }, { "dataset_id": "GDS5430", "description": "33", "sample_id": [ "GSM1269668", "GSM1269669" ], "type": "individual", "id": "GDS5430_19" }, { "dataset_id": "GDS5430", "description": "26", "sample_id": [ "GSM1269670", "GSM1269671" ], "type": "individual", "id": "GDS5430_20" }, { "dataset_id": "GDS5430", "description": "15", "sample_id": [ "GSM1269672", "GSM1269673" ], "type": "individual", "id": "GDS5430_21" }, { "dataset_id": "GDS5430", "description": "9", "sample_id": [ "GSM1269674", "GSM1269675" ], "type": "individual", "id": "GDS5430_22" }, { "dataset_id": "GDS5430", "description": "7", "sample_id": [ "GSM1269676", "GSM1269677" ], "type": "individual", "id": "GDS5430_23" }, { "dataset_id": "GDS5430", "description": "6", "sample_id": [ "GSM1269678", "GSM1269679" ], "type": "individual", "id": "GDS5430_24" }, { "dataset_id": "GDS5430", "description": "35", "sample_id": [ "GSM1269680", "GSM1269681" ], "type": "individual", "id": "GDS5430_25" }, { "dataset_id": "GDS5430", "description": "25", "sample_id": [ "GSM1269682", "GSM1269683" ], "type": "individual", "id": "GDS5430_26" }, { "dataset_id": "GDS5430", "description": "10", "sample_id": [ "GSM1269684", "GSM1269685" ], "type": "individual", "id": "GDS5430_27" }, { "dataset_id": "GDS5430", "description": "5", "sample_id": [ "GSM1269686", "GSM1269687" ], "type": "individual", "id": "GDS5430_28" }, { "dataset_id": "GDS5430", "description": "39", "sample_id": [ "GSM1269688", "GSM1269689" ], "type": "individual", "id": "GDS5430_29" }, { "dataset_id": "GDS5430", "description": "36", "sample_id": [ "GSM1269690", "GSM1269691" ], "type": "individual", "id": "GDS5430_30" }, { "dataset_id": "GDS5430", "description": "23", "sample_id": [ "GSM1269692", "GSM1269693" ], "type": "individual", "id": "GDS5430_31" }, { "dataset_id": "GDS5430", "description": "13", "sample_id": [ "GSM1269694", "GSM1269695" ], "type": "individual", "id": "GDS5430_32" }, { "dataset_id": "GDS5430", "description": "28", "sample_id": [ "GSM1269696", "GSM1269697" ], "type": "individual", "id": "GDS5430_33" }, { "dataset_id": "GDS5430", "description": "14", "sample_id": [ "GSM1269698", "GSM1269699" ], "type": "individual", "id": "GDS5430_34" }, { "dataset_id": "GDS5430", "description": "31", "sample_id": [ "GSM1269700", "GSM1269701" ], "type": "individual", "id": "GDS5430_35" }, { "dataset_id": "GDS5430", "description": "41", "sample_id": [ "GSM1269702", "GSM1269703" ], "type": "individual", "id": "GDS5430_36" }, { "dataset_id": "GDS5430", "description": "17", "sample_id": [ "GSM1269704", "GSM1269705" ], "type": "individual", "id": "GDS5430_37" }, { "dataset_id": "GDS5430", "description": "11", "sample_id": [ "GSM1269706", "GSM1269707" ], "type": "individual", "id": "GDS5430_38" }, { "dataset_id": "GDS5430", "description": "44", "sample_id": [ "GSM1269708", "GSM1269709" ], "type": "individual", "id": "GDS5430_39" }, { "dataset_id": "GDS5430", "description": "16", "sample_id": [ "GSM1269710", "GSM1269711" ], "type": "individual", "id": "GDS5430_40" }, { "dataset_id": "GDS5430", "description": "22", "sample_id": [ "GSM1269712", "GSM1269713" ], "type": "individual", "id": "GDS5430_41" }, { "dataset_id": "GDS5430", "description": "4", "sample_id": [ "GSM1269714", "GSM1269715" ], "type": "individual", "id": "GDS5430_42" }, { "dataset_id": "GDS5430", "description": "2", "sample_id": [ "GSM1269716", "GSM1269717" ], "type": "individual", "id": "GDS5430_43" }, { "dataset_id": "GDS5430", "description": "3", "sample_id": [ "GSM1269718", "GSM1269719" ], "type": "individual", "id": "GDS5430_44" }, { "dataset_id": "GDS5430", "description": "32", "sample_id": [ "GSM1269720", "GSM1269721" ], "type": "individual", "id": "GDS5430_45" }, { "dataset_id": "GDS5430", "description": "40", "sample_id": [ "GSM1269722", "GSM1269723" ], "type": "individual", "id": "GDS5430_46" }, { "dataset_id": "GDS5430", "description": "24", "sample_id": [ "GSM1269724", "GSM1269725" ], "type": "individual", "id": "GDS5430_47" }, { "dataset_id": "GDS5430", "description": "30", "sample_id": [ "GSM1269726", "GSM1269727" ], "type": "individual", "id": "GDS5430_48" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5430", "version": 1.0, "instances": "84", "variables": 30811, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5430.tab", "compression": "gz" } ], [ [ "GDS5431.tab" ], { "title": "Rho kinase inhibition effect on epidermal keratinocyte in vitro", "description": "Analysis of primary epidermal keratinocytes treated with the Rho kinase inihibitor Y-27632. The lifespan of keratinocytes is extended indefinitely by culture in the presence of Y-27632. Results provide insight into the molecular basis of this lifespan extension.", "type": "Expression profiling by array", "pubmed_id": "24774536", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE52515", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5431", "description": "control", "sample_id": [ "GSM1268178", "GSM1268179" ], "type": "agent", "id": "GDS5431_1" }, { "dataset_id": "GDS5431", "description": "Y-27632", "sample_id": [ "GSM1268180", "GSM1268181" ], "type": "agent", "id": "GDS5431_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5431", "version": 1.0, "instances": "4", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5431.tab", "compression": "gz" } ], [ [ "GDS5432.tab" ], { "title": "Age effect on corneal endothelium", "description": "Analysis of corneal endothelium from pediatric (4-11 years old) and adult (53-70 years old) donor corneas. Results provide insight into differential molecular expression between pediatric and adult corneal endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "25377225", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE58315", "order": "ordered", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS5432", "description": "preschooler", "sample_id": [ "GSM1406384", "GSM1406385" ], "type": "age", "id": "GDS5432_1" }, { "dataset_id": "GDS5432", "description": "preadolescent", "sample_id": [ "GSM1406377", "GSM1406379" ], "type": "age", "id": "GDS5432_2" }, { "dataset_id": "GDS5432", "description": "adult", "sample_id": [ "GSM1406386", "GSM1406387", "GSM1406378", "GSM1406380", "GSM1406382" ], "type": "age", "id": "GDS5432_3" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS5432", "version": 1.0, "instances": "9", "variables": 26598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5432.tab", "compression": "gz" } ], [ [ "GDS5433.tab" ], { "title": "Articular cartilage zones: 1-week old normal proximal tibia", "description": "Analysis of superficial (SZ), intermediate/deep (IDZ), and resting (RZ) zones microdissected from articular cartilage of the proximal tibiae of 1-week old mice. Results provide insight into the spatial regulation of gene expression in articular cartilage.", "type": "Expression profiling by array", "pubmed_id": "25068449", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE51994", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5433", "description": "articular cartilage superficial zone", "sample_id": [ "GSM1256929", "GSM1256931", "GSM1256934", "GSM1256937", "GSM1256940" ], "type": "tissue", "id": "GDS5433_1" }, { "dataset_id": "GDS5433", "description": "articular cartilage mid zone", "sample_id": [ "GSM1256930", "GSM1256932", "GSM1256935", "GSM1256938", "GSM1256941" ], "type": "tissue", "id": "GDS5433_2" }, { "dataset_id": "GDS5433", "description": "articular cartilage deep zone", "sample_id": [ "GSM1256933", "GSM1256936", "GSM1256939", "GSM1256942" ], "type": "tissue", "id": "GDS5433_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5433", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5433.tab", "compression": "gz" } ], [ [ "GDS5434.tab" ], { "title": "Articular and growth plate cartilage zones: 10-day old normal proximal tibia", "description": "Analysis of superficial (SZ) and intermediate/deep (IDZ) zones microdissected from articular cartilage and resting (RZ) zone from growth plate cartilage of proximal tibial epiphyses of 10-day old rats. Results provide insight into molecular basis of articular and growth plate cartilage divergence.", "type": "Expression profiling by array", "pubmed_id": "25068449", "platform": "GPL6247", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "29215", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE54216", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5434", "description": "articular cartilage superficial zone", "sample_id": [ "GSM1310352", "GSM1310353", "GSM1310354", "GSM1310355" ], "type": "tissue", "id": "GDS5434_1" }, { "dataset_id": "GDS5434", "description": "articular cartilage intermediate/deep zones", "sample_id": [ "GSM1310359", "GSM1310358", "GSM1310357", "GSM1310356" ], "type": "tissue", "id": "GDS5434_2" }, { "dataset_id": "GDS5434", "description": "growth plate cartilage resting zone", "sample_id": [ "GSM1310363", "GSM1310362", "GSM1310361", "GSM1310360" ], "type": "tissue", "id": "GDS5434_3" } ], "taxid": "10116", "genes": 26454, "aggregation_function": "mean", "name": "GDS5434", "version": 1.0, "instances": "12", "variables": 26456, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5434.tab", "compression": "gz" } ], [ [ "GDS5435.tab" ], { "title": "Dietary palatinose effect on liver", "description": "Analysis of liver from C57Bl/6J males fed isocaloric diets containing sucrose or palatinose. Sucrose is a high glycemic index (GI) sugar; palatinose is a low GI sugar. Results provide insight into molecular mechanisms underlying the role of sucrose in the development of non-alcoholic fatty liver.", "type": "Expression profiling by array", "pubmed_id": "25348610", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE54723", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5435", "description": "sucrose-containing diet", "sample_id": [ "GSM1322809", "GSM1322810", "GSM1322811", "GSM1322812", "GSM1322813", "GSM1322814", "GSM1322815" ], "type": "protocol", "id": "GDS5435_1" }, { "dataset_id": "GDS5435", "description": "palatinose-containing diet", "sample_id": [ "GSM1322816", "GSM1322817", "GSM1322818", "GSM1322819", "GSM1322820", "GSM1322821", "GSM1322822" ], "type": "protocol", "id": "GDS5435_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5435", "version": 1.0, "instances": "14", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5435.tab", "compression": "gz" } ], [ [ "GDS5436.tab" ], { "title": "Metformin effect on Mycobacterium tuberculosis-infected lung", "description": "Analysis of lung from M. tuberculosis (MT)-infected C57BL/6 mice treated with metformin (MET). The antidiabetic drug MET is an activating agent of adenosine monophosphate-activated protein kinase (AMPK). Results provide insight into the potential use of MET as adjunct antituberculosis therapy.", "type": "Expression profiling by array", "pubmed_id": "25411472", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE57275", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5436", "description": "Mycobacterium tuberculosis", "sample_id": [ "GSM1378192", "GSM1378193", "GSM1378194", "GSM1378195", "GSM1378196", "GSM1378197", "GSM1378198", "GSM1378199", "GSM1378200" ], "type": "infection", "id": "GDS5436_1" }, { "dataset_id": "GDS5436", "description": "uninfected", "sample_id": [ "GSM1378201", "GSM1378202", "GSM1378203", "GSM1378204", "GSM1378205" ], "type": "infection", "id": "GDS5436_2" }, { "dataset_id": "GDS5436", "description": "metformin", "sample_id": [ "GSM1378196", "GSM1378197", "GSM1378198", "GSM1378199", "GSM1378200" ], "type": "agent", "id": "GDS5436_3" }, { "dataset_id": "GDS5436", "description": "control", "sample_id": [ "GSM1378192", "GSM1378193", "GSM1378194", "GSM1378195", "GSM1378201", "GSM1378202", "GSM1378203", "GSM1378204", "GSM1378205" ], "type": "agent", "id": "GDS5436_4" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5436", "version": 1.0, "instances": "14", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5436.tab", "compression": "gz" } ], [ [ "GDS5437.tab" ], { "title": "Metastatic breast cancer model: premetastatic lung", "description": "Analysis of premetastatic lung from BALB/c mice without any tumors (na\u00efve) and from mice bearing nonmetastatic (67NR) or metastatic (4T1) breast carcinomas. Results provide insight into metastatic tumor-induced molecular changes in premetastatic lungs before the arrival of metastatic tumor cells.", "type": "Expression profiling by array", "pubmed_id": "21081700", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE62817", "order": "none", "update_date": "Apr 07 2015", "subsets": [ { "dataset_id": "GDS5437", "description": "metastatic (4T1) breast carcinoma", "sample_id": [ "GSM1533823", "GSM1533824", "GSM1533825", "GSM1533826" ], "type": "disease state", "id": "GDS5437_1" }, { "dataset_id": "GDS5437", "description": "nonmetastatic (67NR) breast carcinoma", "sample_id": [ "GSM1533828", "GSM1533829", "GSM1533830", "GSM1533831", "GSM1533832" ], "type": "disease state", "id": "GDS5437_2" }, { "dataset_id": "GDS5437", "description": "na\u00efve", "sample_id": [ "GSM1533833", "GSM1533834", "GSM1533835", "GSM1533836", "GSM1533837" ], "type": "disease state", "id": "GDS5437_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5437", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5437.tab", "compression": "gz" } ], [ [ "GDS5438.tab" ], { "title": "Lung from cigarette smoke-related chronic obstructive pulmonary disease model: time course", "description": "Analysis of lung from cigarette smoke (CS)-treated C57BL/6N females at 4 and 6 months of age. Tobacco smoking is a major cause of chronic obstructive pulmonary disease (COPD). Results provide insight into the molecular mechanisms underlying cigarette smoke-induced COPD.", "type": "Expression profiling by array", "pubmed_id": "25128521", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE52509", "order": "none", "update_date": "Apr 07 2015", "subsets": [ { "dataset_id": "GDS5438", "description": "4 months", "sample_id": [ "GSM1267994", "GSM1267995", "GSM1267996", "GSM1267997", "GSM1267998", "GSM1267999" ], "type": "age", "id": "GDS5438_1" }, { "dataset_id": "GDS5438", "description": "6 months", "sample_id": [ "GSM1268000", "GSM1268001", "GSM1268002", "GSM1268003", "GSM1268004", "GSM1268005" ], "type": "age", "id": "GDS5438_2" }, { "dataset_id": "GDS5438", "description": "cigarette smoke", "sample_id": [ "GSM1267994", "GSM1267995", "GSM1267996", "GSM1268000", "GSM1268001", "GSM1268002" ], "type": "stress", "id": "GDS5438_3" }, { "dataset_id": "GDS5438", "description": "control", "sample_id": [ "GSM1267997", "GSM1267998", "GSM1267999", "GSM1268003", "GSM1268004", "GSM1268005" ], "type": "stress", "id": "GDS5438_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5438", "version": 1.0, "instances": "12", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5438.tab", "compression": "gz" } ], [ [ "GDS5439.tab" ], { "title": "Mutant HLA-F-adjacent transcript 10 overexpression effect on HCT116 colon cancer cell line", "description": "Analysis of HCT116 cells expressing wildtype HLA-F-adjacent transcript 10 (FAT10) or FAT10 mutants with mutations at mitotic arrest-deficient 2 (MAD2)-binding region 1 (M1), region 2 (M2), or at both regions (M12). Results assess the molecular effects of abrogating the FAT10-MAD2 interaction.", "type": "Expression profiling by array", "pubmed_id": "25422469", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE54167", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5439", "description": "parental wild-type", "sample_id": [ "GSM1309040", "GSM1309041" ], "type": "genotype/variation", "id": "GDS5439_1" }, { "dataset_id": "GDS5439", "description": "FAT10 wild-type", "sample_id": [ "GSM1309042", "GSM1309043" ], "type": "genotype/variation", "id": "GDS5439_2" }, { "dataset_id": "GDS5439", "description": "FAT10 M1 mutant (left region mutation)", "sample_id": [ "GSM1309044", "GSM1309045" ], "type": "genotype/variation", "id": "GDS5439_3" }, { "dataset_id": "GDS5439", "description": "FAT10 M2 mutant (right region mutation)", "sample_id": [ "GSM1309046", "GSM1309047" ], "type": "genotype/variation", "id": "GDS5439_4" }, { "dataset_id": "GDS5439", "description": "FAT10 M12 mutant (left and right region mutation)", "sample_id": [ "GSM1309048", "GSM1309049" ], "type": "genotype/variation", "id": "GDS5439_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5439", "version": 1.0, "instances": "10", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5439.tab", "compression": "gz" } ], [ [ "GDS5440.tab" ], { "title": "Androgen effect on carboxyl terminal-binding protein 2-deficient prostate cancer cell line", "description": "Analysis of androgen receptor (AR)-positive LNCaP prostate cancer cells depleted for carboxyl terminal-binding protein 2 (CTBP2) then treated with the androgen, dihydrotestosterone (DHT). Results provide insight into the molecular effects of CtBP2 knockdown on AR-mediated gene regulation.", "type": "Expression profiling by array", "pubmed_id": "25228652", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE58309", "order": "none", "update_date": "Apr 08 2015", "subsets": [ { "dataset_id": "GDS5440", "description": "CTBP2 knockdown", "sample_id": [ "GSM1406291", "GSM1406290" ], "type": "genotype/variation", "id": "GDS5440_1" }, { "dataset_id": "GDS5440", "description": "FOXP1 knockdown", "sample_id": [ "GSM1406289", "GSM1406288" ], "type": "genotype/variation", "id": "GDS5440_2" }, { "dataset_id": "GDS5440", "description": "FOXA1 knockdown", "sample_id": [ "GSM1406287", "GSM1406286" ], "type": "genotype/variation", "id": "GDS5440_3" }, { "dataset_id": "GDS5440", "description": "control", "sample_id": [ "GSM1406292", "GSM1406285", "GSM1406284", "GSM1406293" ], "type": "genotype/variation", "id": "GDS5440_4" }, { "dataset_id": "GDS5440", "description": "dihydrotestosterone", "sample_id": [ "GSM1406289", "GSM1406291", "GSM1406287", "GSM1406293", "GSM1406285" ], "type": "agent", "id": "GDS5440_5" }, { "dataset_id": "GDS5440", "description": "control", "sample_id": [ "GSM1406288", "GSM1406290", "GSM1406286", "GSM1406284", "GSM1406292" ], "type": "agent", "id": "GDS5440_6" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5440", "version": 1.0, "instances": "10", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5440.tab", "compression": "gz" } ], [ [ "GDS5444.tab" ], { "title": "E3 ubiquitin ligase PARK2 depletion effect on SNB19 glioma cell line", "description": "Analysis of SNB19 glioma cells depleted for PARK2. PARK2 is an E3 ubiquitin ligase. Results provide insight into the role of PARK2 in the coordinate control of cyclins in cell cycle regulation and tumor suppression.", "type": "Expression profiling by array", "pubmed_id": "24793136", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE50864", "order": "none", "update_date": "Dec 14 2014", "subsets": [ { "dataset_id": "GDS5444", "description": "control", "sample_id": [ "GSM1231286", "GSM1231287" ], "type": "agent", "id": "GDS5444_1" }, { "dataset_id": "GDS5444", "description": "PARK2 siRNA 1", "sample_id": [ "GSM1231288", "GSM1231289" ], "type": "agent", "id": "GDS5444_2" }, { "dataset_id": "GDS5444", "description": "PARK2 siRNA 2", "sample_id": [ "GSM1231290", "GSM1231291" ], "type": "agent", "id": "GDS5444_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5444", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5444.tab", "compression": "gz" } ], [ [ "GDS5445.tab" ], { "title": "E3 ubiquitin ligase PARK2 depletion effect on SF539 glioma cell line", "description": "Analysis of SF539 glioma cells depleted for PARK2. PARK2 is an E3 ubiquitin ligase. Results provide insight into the role of PARK2 in the coordinate control of cyclins in cell cycle regulation and tumor suppression.", "type": "Expression profiling by array", "pubmed_id": "24793136", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE50864", "order": "none", "update_date": "Dec 14 2014", "subsets": [ { "dataset_id": "GDS5445", "description": "control", "sample_id": [ "GSM1231292", "GSM1231293" ], "type": "agent", "id": "GDS5445_1" }, { "dataset_id": "GDS5445", "description": "PARK2 siRNA 1", "sample_id": [ "GSM1231294", "GSM1231295" ], "type": "agent", "id": "GDS5445_2" }, { "dataset_id": "GDS5445", "description": "PARK2 siRNA 2", "sample_id": [ "GSM1231296", "GSM1231297" ], "type": "agent", "id": "GDS5445_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5445", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5445.tab", "compression": "gz" } ], [ [ "GDS5446.tab" ], { "title": "Phf19 depletion effect on embryonic carcinoma cell line", "description": "Analysis of F9 embryonic carcinoma cells depleted for Phf19, a PRC2 associated protein. PRC2 regulates pluripotency, differentiation, and tumorigenesis by catalyzing histone H3 lysine 27 trimethylation. Results provide insight into the role of Phf19 in regulating PRC2 function.", "type": "Expression profiling by array", "pubmed_id": "23273982", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE42463", "order": "none", "update_date": "Feb 11 2015", "subsets": [ { "dataset_id": "GDS5446", "description": "control", "sample_id": [ "GSM1040577", "GSM1040579" ], "type": "genotype/variation", "id": "GDS5446_1" }, { "dataset_id": "GDS5446", "description": "Phf19 knockdown", "sample_id": [ "GSM1040578", "GSM1040580" ], "type": "genotype/variation", "id": "GDS5446_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5446", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5446.tab", "compression": "gz" } ], [ [ "GDS5449.tab" ], { "title": "Mek1 Mek2 double mutation effect on the embryonic brain dorsal cortex", "description": "Analysis of brain dorsal cortices of E18.5 embryos deleted for Mek1 and Mek2, dual specificity kinases. Mek1 and Mek2 are components of the RAF/MEK/ERK singaling pathway. Results provide insight into the role of Mek1 and Mek2 in gliogenesis.", "type": "Expression profiling by array", "pubmed_id": "22998872", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE40675", "order": "none", "update_date": "Dec 17 2014", "subsets": [ { "dataset_id": "GDS5449", "description": "wild type", "sample_id": [ "GSM999081", "GSM999082" ], "type": "genotype/variation", "id": "GDS5449_1" }, { "dataset_id": "GDS5449", "description": "mek1 mek2 null", "sample_id": [ "GSM999083", "GSM999084" ], "type": "genotype/variation", "id": "GDS5449_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5449", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5449.tab", "compression": "gz" } ], [ [ "GDS5451.tab" ], { "title": "Pregnancy effect on liver of cytochrome P450 2D6 hepatic metabolism model: time course", "description": "Analysis of livers of Cytochrome P450 2D6 (CYP2D6)-humanized mice at various gestational stages: pre-pregnancy, 21 days of pregnancy, and 7 days postpartum. Results provide insight into molecular mechanisms underlying increased CYP2D6-mediated drug metabolism during pregnancy.", "type": "Expression profiling by array", "pubmed_id": "25217496", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE50166", "order": "ordered", "update_date": "Mar 09 2015", "subsets": [ { "dataset_id": "GDS5451", "description": "pre-pregnancy", "sample_id": [ "GSM1215014", "GSM1215015" ], "type": "development stage", "id": "GDS5451_1" }, { "dataset_id": "GDS5451", "description": "21 days pregnancy", "sample_id": [ "GSM1215016", "GSM1215017" ], "type": "development stage", "id": "GDS5451_2" }, { "dataset_id": "GDS5451", "description": "7 days postpartum", "sample_id": [ "GSM1215018", "GSM1215019" ], "type": "development stage", "id": "GDS5451_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5451", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5451.tab", "compression": "gz" } ], [ [ "GDS5452.tab" ], { "title": "MLL2-depleted epidermal keratinocyte response to the induction of differentiation in vitro", "description": "Analysis of MLL2-depleted neonatal epidermal keratinocytes following treatment with 1.8 mM calcium for 24 hours to induce differentiation. Histone H3K4 methyltransferase MLL2 is a trithorax group protein. Results provide insight into the role of MLL2 in keratinocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "22829784", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE37570", "order": "none", "update_date": "Dec 15 2014", "subsets": [ { "dataset_id": "GDS5452", "description": "control", "sample_id": [ "GSM921888", "GSM921889" ], "type": "agent", "id": "GDS5452_1" }, { "dataset_id": "GDS5452", "description": "MLL2 siRNA", "sample_id": [ "GSM921890", "GSM921891" ], "type": "agent", "id": "GDS5452_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5452", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5452.tab", "compression": "gz" } ], [ [ "GDS5453.tab" ], { "title": "GRHL3-depleted epidermal keratinocyte response to the induction of differentiation in vitro", "description": "Analysis of Grainyhead like 3 (GRHL3)-depleted neonatal epidermal keratinocytes following treatment with 1.8 mM calcium for 24 hours to induce differentiation. GRHL3 encodes a transcription factor. Results provide insight into the role of GRHL3 in keratinocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "22829784", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE37049", "order": "none", "update_date": "Dec 15 2014", "subsets": [ { "dataset_id": "GDS5453", "description": "control", "sample_id": [ "GSM909315", "GSM909316", "GSM909317" ], "type": "agent", "id": "GDS5453_1" }, { "dataset_id": "GDS5453", "description": "GRHL3 siRNA", "sample_id": [ "GSM909318", "GSM909319", "GSM909320" ], "type": "agent", "id": "GDS5453_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5453", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5453.tab", "compression": "gz" } ], [ [ "GDS5454.tab" ], { "title": "Epidermal keratinocyte differentiation in vitro", "description": "Analysis of neonatal epidermal keratinocytes treated with 1.8 mM calcium for up to 48 hours. Results provide insight into the molecular mechanisms underlying the differentiation of epidermal keratinocytes.", "type": "Expression profiling by array", "pubmed_id": "22829784", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE38628", "order": "ordered", "update_date": "Dec 15 2014", "subsets": [ { "dataset_id": "GDS5454", "description": "0 h", "sample_id": [ "GSM946472", "GSM946473" ], "type": "time", "id": "GDS5454_1" }, { "dataset_id": "GDS5454", "description": "1 h", "sample_id": [ "GSM946474", "GSM946475" ], "type": "time", "id": "GDS5454_2" }, { "dataset_id": "GDS5454", "description": "3 h", "sample_id": [ "GSM946476", "GSM946477" ], "type": "time", "id": "GDS5454_3" }, { "dataset_id": "GDS5454", "description": "6 h", "sample_id": [ "GSM946478", "GSM946479" ], "type": "time", "id": "GDS5454_4" }, { "dataset_id": "GDS5454", "description": "12 h", "sample_id": [ "GSM946480", "GSM946481" ], "type": "time", "id": "GDS5454_5" }, { "dataset_id": "GDS5454", "description": "24 h", "sample_id": [ "GSM946482", "GSM946483" ], "type": "time", "id": "GDS5454_6" }, { "dataset_id": "GDS5454", "description": "48 h", "sample_id": [ "GSM946484", "GSM946485" ], "type": "time", "id": "GDS5454_7" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5454", "version": 1.0, "instances": "14", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5454.tab", "compression": "gz" } ], [ [ "GDS5455.tab" ], { "title": "Ribosomal S6 kinase 2 deficiency effect on TNF-\u03b1 transgenic model of inflammatory arthritis: fibroblast-like synoviocytes", "description": "Analysis of primary fibroblast-like synoviocytes from human tumor necrosis factor-\u03b1 transgenics (hTNFtg) knocked out for ribosomal S6 kinase (Rsk2). Rsk2 belongs to the p90(RSK) family of serine/threonine kinases. Results provide insight into the role of Rsk2 in TNF-induced synovial hyperplasia.", "type": "Expression profiling by array", "pubmed_id": [ "25414238", "19265543" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE52992", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5455", "description": "hTNFtg; Rsk2-/y", "sample_id": [ "GSM1279900", "GSM1279901", "GSM1279902" ], "type": "genotype/variation", "id": "GDS5455_1" }, { "dataset_id": "GDS5455", "description": "hTNFtg; Rsk2+/y", "sample_id": [ "GSM1279903", "GSM1279904", "GSM1279905" ], "type": "genotype/variation", "id": "GDS5455_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5455", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5455.tab", "compression": "gz" } ], [ [ "GDS5456.tab" ], { "title": "TGIF1-transduced MLL-AF9-transformed leukemic cells", "description": "Analysis of mixed lineage leukemia (MLL)-AF9 transformed cells (MAF9) transduced with TGF-\u03b2 induced factor 1 (TGIF1). TGIF1 is a member of the TALE (three-amino-acid loop extension) family of homeodomain-containing transcription factors. Results provide insight into the role of TGIF1 in MAF9 cells.", "type": "Expression profiling by array", "pubmed_id": "25349154", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE55713", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5456", "description": "control", "sample_id": [ "GSM1342264", "GSM1342265", "GSM1342266" ], "type": "protocol", "id": "GDS5456_1" }, { "dataset_id": "GDS5456", "description": "pMIG-TGIF1 transduced", "sample_id": [ "GSM1342267", "GSM1342268", "GSM1342269" ], "type": "protocol", "id": "GDS5456_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5456", "version": 1.0, "instances": "6", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5456.tab", "compression": "gz" } ], [ [ "GDS5457.tab" ], { "title": "Onecut2 deficiency effect on adult retina", "description": "Analysis of adult retinas from onecut2 (OC2) knockouts and wild type littermates. OC2 is a member of the Onecut family of transcription factors characterized by a cut domain and an atypical homeodomain. Results provide insight into the role of OC2 in the retina.", "type": "Expression profiling by array", "pubmed_id": [ "25313862", "26484186" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE57918", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5457", "description": "onecut2 knockout", "sample_id": [ "GSM1397409", "GSM1397410", "GSM1442337" ], "type": "genotype/variation", "id": "GDS5457_1" }, { "dataset_id": "GDS5457", "description": "onecut2 wild type", "sample_id": [ "GSM1397411", "GSM1397412", "GSM1442336" ], "type": "genotype/variation", "id": "GDS5457_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5457", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5457.tab", "compression": "gz" } ], [ [ "GDS5458.tab" ], { "title": "Onecut1 deficiency effect on embryonic E14.5 retina", "description": "Analysis of embryonic retinas from onecut1 (OC1) knockouts at E14.5 and from wild type littermates. OC1 is a member of the Onecut family of transcription factors characterized by a cut domain and an atypical homeodomain. Results provide insight into the role of OC1 in the retina.", "type": "Expression profiling by array", "pubmed_id": [ "25313862", "26484186" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE57917", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5458", "description": "onecut1 knockout", "sample_id": [ "GSM1397405", "GSM1397406", "GSM1481343" ], "type": "genotype/variation", "id": "GDS5458_1" }, { "dataset_id": "GDS5458", "description": "onecut1 wild type", "sample_id": [ "GSM1397407", "GSM1397408", "GSM1481344" ], "type": "genotype/variation", "id": "GDS5458_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5458", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5458.tab", "compression": "gz" } ], [ [ "GDS5459.tab" ], { "title": "Survival motor neuron deficiency effect on somatodendritic compartment of cultured motoneurons", "description": "Analysis of the somatodendritic compartment of cultured motoneurons depleted for survival motor neuron (Smn). Smn is the protein deficient in spinal muscular atrophy (SMA). Results provide insight into the somatodendritic mRNA content of degenerating motoneurons in vitro.", "type": "Expression profiling by array", "pubmed_id": "25246652", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE59506", "order": "none", "update_date": "Apr 23 2015", "subsets": [ { "dataset_id": "GDS5459", "description": "wild type", "sample_id": [ "GSM1438522", "GSM1438521", "GSM1438520" ], "type": "genotype/variation", "id": "GDS5459_1" }, { "dataset_id": "GDS5459", "description": "empty vector control", "sample_id": [ "GSM1438525", "GSM1438524", "GSM1438523" ], "type": "genotype/variation", "id": "GDS5459_2" }, { "dataset_id": "GDS5459", "description": "Smn knockdown", "sample_id": [ "GSM1438528", "GSM1438527", "GSM1438526" ], "type": "genotype/variation", "id": "GDS5459_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5459", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5459.tab", "compression": "gz" } ], [ [ "GDS5460.tab" ], { "title": "Survival motor neuron deficiency effect on axonal compartment of cultured motoneurons", "description": "Analysis of the axonal compartment of cultured motoneurons depleted for survival motor neuron (Smn). Smn is the protein deficient in spinal muscular atrophy (SMA). Results provide insight into the axonal mRNA content of degenerating motoneurons in vitro.", "type": "Expression profiling by array", "pubmed_id": "25246652", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE59506", "order": "none", "update_date": "Apr 23 2015", "subsets": [ { "dataset_id": "GDS5460", "description": "wild type", "sample_id": [ "GSM1438529", "GSM1438530", "GSM1438531" ], "type": "genotype/variation", "id": "GDS5460_1" }, { "dataset_id": "GDS5460", "description": "empty vector control", "sample_id": [ "GSM1438532", "GSM1438533", "GSM1438534" ], "type": "genotype/variation", "id": "GDS5460_2" }, { "dataset_id": "GDS5460", "description": "Smn knockdown", "sample_id": [ "GSM1438535", "GSM1438536", "GSM1438537" ], "type": "genotype/variation", "id": "GDS5460_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5460", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5460.tab", "compression": "gz" } ], [ [ "GDS5461.tab" ], { "title": "17\u03b2-estradiol effect on uterus of uterine epithelial ER\u03b1 conditional knockout model: time course", "description": "Analysis of uteri from ovariectomized adult females with uterine epithelial cell-specific ER\u03b1 deletion following treatment with 17\u03b2-estradiol for 2 or 24 hrs. Results provide insight into cell specific actions of ER\u03b1 in the female reproductive tract.", "type": "Expression profiling by array", "pubmed_id": "25210133", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE53812", "order": "none", "update_date": "Apr 23 2015", "subsets": [ { "dataset_id": "GDS5461", "description": "WT", "sample_id": [ "GSM568949", "GSM568950", "GSM568951", "GSM568952", "GSM568953", "GSM568954", "GSM568946", "GSM568947", "GSM568948" ], "type": "genotype/variation", "id": "GDS5461_1" }, { "dataset_id": "GDS5461", "description": "cKO", "sample_id": [ "GSM1301149", "GSM1301150", "GSM1301151", "GSM1301143", "GSM1301144", "GSM1301145", "GSM1301146", "GSM1301147", "GSM1301148" ], "type": "genotype/variation", "id": "GDS5461_2" }, { "dataset_id": "GDS5461", "description": "control", "sample_id": [ "GSM568946", "GSM568947", "GSM568948", "GSM1301143", "GSM1301144", "GSM1301145" ], "type": "agent", "id": "GDS5461_3" }, { "dataset_id": "GDS5461", "description": "estradiol", "sample_id": [ "GSM568952", "GSM568953", "GSM568954", "GSM568949", "GSM568950", "GSM568951", "GSM1301146", "GSM1301147", "GSM1301148", "GSM1301149", "GSM1301150", "GSM1301151" ], "type": "agent", "id": "GDS5461_4" }, { "dataset_id": "GDS5461", "description": "2 hours", "sample_id": [ "GSM568949", "GSM568950", "GSM568951", "GSM1301146", "GSM1301147", "GSM1301148" ], "type": "time", "id": "GDS5461_5" }, { "dataset_id": "GDS5461", "description": "24 hours", "sample_id": [ "GSM568952", "GSM568953", "GSM568954", "GSM568946", "GSM568947", "GSM568948", "GSM1301149", "GSM1301150", "GSM1301151", "GSM1301143", "GSM1301144", "GSM1301145" ], "type": "time", "id": "GDS5461_6" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS5461", "version": 1.0, "instances": "18", "variables": 28104, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5461.tab", "compression": "gz" } ], [ [ "GDS5462.tab" ], { "title": "Ada3 deficiency effect on embryonic fibroblasts", "description": "Analysis of embryonic fibroblasts lacking Ada3. Ada3 is a component of histone acetylase-based transcriptional regulatory complexes. Result provide insight into the role of Ada3 in embryonic development and cell cycle progression.", "type": "Expression profiling by array", "pubmed_id": "22736770", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE37542", "order": "none", "update_date": "Dec 17 2014", "subsets": [ { "dataset_id": "GDS5462", "description": "control", "sample_id": [ "GSM921355", "GSM921356" ], "type": "genotype/variation", "id": "GDS5462_1" }, { "dataset_id": "GDS5462", "description": "Ada3 null", "sample_id": [ "GSM921357", "GSM921358" ], "type": "genotype/variation", "id": "GDS5462_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5462", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5462.tab", "compression": "gz" } ], [ [ "GDS5464.tab" ], { "title": "NFATc1 deficiency effect on osteoclast differentiation in vitro", "description": "Analysis of osteoclasts lacking the transcription factor NFATc1. Osteoclasts cultured in the presence of M-CSF and RANKL to induce differentiation. Results identify gene targets of NFATc1 in osteoclastogenesis.", "type": "Expression profiling by array", "pubmed_id": "18846253", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE37219", "order": "none", "update_date": "Dec 17 2014", "subsets": [ { "dataset_id": "GDS5464", "description": "wild type", "sample_id": [ "GSM913972", "GSM913973" ], "type": "genotype/variation", "id": "GDS5464_1" }, { "dataset_id": "GDS5464", "description": "NFATc1 deficient", "sample_id": [ "GSM913974", "GSM913975" ], "type": "genotype/variation", "id": "GDS5464_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5464", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5464.tab", "compression": "gz" } ], [ [ "GDS5465.tab" ], { "title": "UTX deficiency effect on embryonic stem cells", "description": "Analysis of embryonic stem cells lacking UTX. UTX is a histone H3K27 demethylase that belongs to the the family of JmjC domain-containing proteins. Results provide insight into the role of UTX in embryonic stem cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "22949634", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE35415", "order": "none", "update_date": "Dec 17 2014", "subsets": [ { "dataset_id": "GDS5465", "description": "control", "sample_id": [ "GSM867832", "GSM867833" ], "type": "genotype/variation", "id": "GDS5465_1" }, { "dataset_id": "GDS5465", "description": "UTX deficient", "sample_id": [ "GSM867834", "GSM867835" ], "type": "genotype/variation", "id": "GDS5465_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5465", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5465.tab", "compression": "gz" } ], [ [ "GDS5467.tab" ], { "title": "Ezrin inactive mutant overexpression effect on osteosarcoma cell line", "description": "Analysis of K7M2 osteosarcoma cells overexpressing the inactive Ezrin T567A mutant protein. Ezrin links the plasma membrane to the actin cytoskeleton. Phosphorylation of amino acid T567 activates wild type Ezrin. Results provide insight into the role of Ezrin in the progression of osteosarcoma.", "type": "Expression profiling by array", "pubmed_id": "22147261", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE33897", "order": "none", "update_date": "Dec 17 2014", "subsets": [ { "dataset_id": "GDS5467", "description": "control", "sample_id": [ "GSM838522" ], "type": "protocol", "id": "GDS5467_1" }, { "dataset_id": "GDS5467", "description": "EzrinT567A overexpression", "sample_id": [ "GSM838523", "GSM838524", "GSM838525" ], "type": "protocol", "id": "GDS5467_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5467", "version": 1.0, "instances": "4", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5467.tab", "compression": "gz" } ], [ [ "GDS5468.tab" ], { "title": "Interleukin-33 effect on dual-specificity phosphatase 5-deficient bone marrow derived eosinophils", "description": "Analysis of BM-derived eosinophils isolated from dual-specificity phosphatase 5-deficient mice and stimulated with IL-33. DUSP5 is a growth factor\u2010inducible phosphatase preferentially expressed in immune cells. Results provide insight into the role of DUSP5 in IL-33 signaling in eosinophils.", "type": "Expression profiling by array", "pubmed_id": "25398911", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE62999", "order": "none", "update_date": "Apr 23 2015", "subsets": [ { "dataset_id": "GDS5468", "description": "Dusp5 knockout", "sample_id": [ "GSM1537863", "GSM1537864", "GSM1537865", "GSM1537866", "GSM1537867", "GSM1537853", "GSM1537854", "GSM1537855", "GSM1537856", "GSM1537857" ], "type": "genotype/variation", "id": "GDS5468_1" }, { "dataset_id": "GDS5468", "description": "wild type", "sample_id": [ "GSM1537858", "GSM1537859", "GSM1537860", "GSM1537861", "GSM1537862", "GSM1537848", "GSM1537849", "GSM1537850", "GSM1537851", "GSM1537852" ], "type": "genotype/variation", "id": "GDS5468_2" }, { "dataset_id": "GDS5468", "description": "IL-33", "sample_id": [ "GSM1537863", "GSM1537864", "GSM1537865", "GSM1537866", "GSM1537867", "GSM1537858", "GSM1537859", "GSM1537860", "GSM1537861", "GSM1537862" ], "type": "agent", "id": "GDS5468_3" }, { "dataset_id": "GDS5468", "description": "control", "sample_id": [ "GSM1537853", "GSM1537854", "GSM1537855", "GSM1537856", "GSM1537857", "GSM1537848", "GSM1537849", "GSM1537850", "GSM1537851", "GSM1537852" ], "type": "agent", "id": "GDS5468_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5468", "version": 1.0, "instances": "20", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5468.tab", "compression": "gz" } ], [ [ "GDS5469.tab" ], { "title": "Left ventricle myocardium from MerCreMer model of transient cardiomyopathy: time course", "description": "Temporal analysis of left ventricle myocardium from the MCM model of cardiomyopathy. Transient cardiomyopathy develops in this model after 5 day exposure to tamoxifen, with peak heart failure (HF) at day 10, and resolved HF at day 28. Results provide insight into the molecular basis of evolving HF.", "type": "Expression profiling by array", "pubmed_id": "25159852", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE54681", "order": "ordered", "update_date": "Apr 24 2015", "subsets": [ { "dataset_id": "GDS5469", "description": "control", "sample_id": [ "GSM1322060", "GSM1322061", "GSM1322062", "GSM1322063", "GSM1322064" ], "type": "protocol", "id": "GDS5469_1" }, { "dataset_id": "GDS5469", "description": "TAM injected daily for 2 days", "sample_id": [ "GSM1322065", "GSM1322066", "GSM1322067", "GSM1322068" ], "type": "protocol", "id": "GDS5469_2" }, { "dataset_id": "GDS5469", "description": "TAM injected daily for 3 days", "sample_id": [ "GSM1322069", "GSM1322070", "GSM1322071" ], "type": "protocol", "id": "GDS5469_3" }, { "dataset_id": "GDS5469", "description": "TAM injected daily for 5 days + 5 days normal diet", "sample_id": [ "GSM1322072", "GSM1322073", "GSM1322074" ], "type": "protocol", "id": "GDS5469_4" }, { "dataset_id": "GDS5469", "description": "TAM injected daily for 5 days + 23 days normal diet", "sample_id": [ "GSM1322075", "GSM1322076", "GSM1322077", "GSM1322078" ], "type": "protocol", "id": "GDS5469_5" }, { "dataset_id": "GDS5469", "description": "control", "sample_id": [ "GSM1322060", "GSM1322061", "GSM1322062", "GSM1322063", "GSM1322064" ], "type": "time", "id": "GDS5469_6" }, { "dataset_id": "GDS5469", "description": "day 2", "sample_id": [ "GSM1322065", "GSM1322066", "GSM1322067", "GSM1322068" ], "type": "time", "id": "GDS5469_7" }, { "dataset_id": "GDS5469", "description": "day 3", "sample_id": [ "GSM1322069", "GSM1322070", "GSM1322071" ], "type": "time", "id": "GDS5469_8" }, { "dataset_id": "GDS5469", "description": "day 10", "sample_id": [ "GSM1322072", "GSM1322073", "GSM1322074" ], "type": "time", "id": "GDS5469_9" }, { "dataset_id": "GDS5469", "description": "day 28", "sample_id": [ "GSM1322075", "GSM1322076", "GSM1322077", "GSM1322078" ], "type": "time", "id": "GDS5469_10" }, { "dataset_id": "GDS5469", "description": "non-failing control", "sample_id": [ "GSM1322060", "GSM1322061", "GSM1322062", "GSM1322063", "GSM1322064" ], "type": "disease state", "id": "GDS5469_11" }, { "dataset_id": "GDS5469", "description": "early heart failure", "sample_id": [ "GSM1322065", "GSM1322066", "GSM1322067", "GSM1322068", "GSM1322069", "GSM1322070", "GSM1322071" ], "type": "disease state", "id": "GDS5469_12" }, { "dataset_id": "GDS5469", "description": "peak heart failure", "sample_id": [ "GSM1322072", "GSM1322073", "GSM1322074" ], "type": "disease state", "id": "GDS5469_13" }, { "dataset_id": "GDS5469", "description": "resolved heart failure", "sample_id": [ "GSM1322075", "GSM1322076", "GSM1322077", "GSM1322078" ], "type": "disease state", "id": "GDS5469_14" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5469", "version": 1.0, "instances": "19", "variables": 18037, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5469.tab", "compression": "gz" } ], [ [ "GDS5473.tab" ], { "title": "Short-term fasting effect on skeletal muscle: time course", "description": "Analysis of skeletal muscle biopsies collected at 1.5, 4, 10, and 24hr post-meal time from healthy young men subjected to a 24hr fast. Results provide insight into the molecular mechanisms underlying metabolic adaptation to fasting in healthy humans.", "type": "Expression profiling by array", "pubmed_id": "25249505", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "transformed count", "reference_series": "GSE55924", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5473", "description": "subject 1", "sample_id": [ "GSM1348553", "GSM1348554", "GSM1348555", "GSM1348556" ], "type": "individual", "id": "GDS5473_1" }, { "dataset_id": "GDS5473", "description": "subject 2", "sample_id": [ "GSM1348557", "GSM1348558", "GSM1348559", "GSM1348560" ], "type": "individual", "id": "GDS5473_2" }, { "dataset_id": "GDS5473", "description": "subject 3", "sample_id": [ "GSM1348561", "GSM1348562", "GSM1348563", "GSM1348564" ], "type": "individual", "id": "GDS5473_3" }, { "dataset_id": "GDS5473", "description": "subject 4", "sample_id": [ "GSM1348565", "GSM1348566", "GSM1348567", "GSM1348568" ], "type": "individual", "id": "GDS5473_4" }, { "dataset_id": "GDS5473", "description": "subject 5", "sample_id": [ "GSM1348569", "GSM1348570", "GSM1348571", "GSM1348572" ], "type": "individual", "id": "GDS5473_5" }, { "dataset_id": "GDS5473", "description": "subject 6", "sample_id": [ "GSM1348573", "GSM1348574", "GSM1348575", "GSM1348576" ], "type": "individual", "id": "GDS5473_6" }, { "dataset_id": "GDS5473", "description": "subject 7", "sample_id": [ "GSM1348577", "GSM1348578", "GSM1348579", "GSM1348580" ], "type": "individual", "id": "GDS5473_7" }, { "dataset_id": "GDS5473", "description": "subject 8", "sample_id": [ "GSM1348581", "GSM1348582", "GSM1348583", "GSM1348584" ], "type": "individual", "id": "GDS5473_8" }, { "dataset_id": "GDS5473", "description": "subject 9", "sample_id": [ "GSM1348585", "GSM1348586", "GSM1348587", "GSM1348588" ], "type": "individual", "id": "GDS5473_9" }, { "dataset_id": "GDS5473", "description": "subject 10", "sample_id": [ "GSM1348589", "GSM1348590", "GSM1348591", "GSM1348592" ], "type": "individual", "id": "GDS5473_10" }, { "dataset_id": "GDS5473", "description": "subject 11", "sample_id": [ "GSM1348593", "GSM1348594", "GSM1348595", "GSM1348596" ], "type": "individual", "id": "GDS5473_11" }, { "dataset_id": "GDS5473", "description": "subject 12", "sample_id": [ "GSM1348597", "GSM1348598", "GSM1348599", "GSM1348600" ], "type": "individual", "id": "GDS5473_12" }, { "dataset_id": "GDS5473", "description": "hour 1.5", "sample_id": [ "GSM1348553", "GSM1348557", "GSM1348561", "GSM1348565", "GSM1348569", "GSM1348573", "GSM1348577", "GSM1348581", "GSM1348585", "GSM1348589", "GSM1348593", "GSM1348597" ], "type": "time", "id": "GDS5473_13" }, { "dataset_id": "GDS5473", "description": "hour 4", "sample_id": [ "GSM1348554", "GSM1348558", "GSM1348562", "GSM1348566", "GSM1348570", "GSM1348574", "GSM1348578", "GSM1348582", "GSM1348586", "GSM1348590", "GSM1348594", "GSM1348598" ], "type": "time", "id": "GDS5473_14" }, { "dataset_id": "GDS5473", "description": "hour 10", "sample_id": [ "GSM1348555", "GSM1348559", "GSM1348563", "GSM1348567", "GSM1348571", "GSM1348575", "GSM1348579", "GSM1348583", "GSM1348587", "GSM1348591", "GSM1348595", "GSM1348599" ], "type": "time", "id": "GDS5473_15" }, { "dataset_id": "GDS5473", "description": "hour 24", "sample_id": [ "GSM1348556", "GSM1348560", "GSM1348564", "GSM1348568", "GSM1348572", "GSM1348576", "GSM1348580", "GSM1348584", "GSM1348588", "GSM1348592", "GSM1348596", "GSM1348600" ], "type": "time", "id": "GDS5473_16" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5473", "version": 1.0, "instances": "48", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5473.tab", "compression": "gz" } ], [ [ "GDS5474.tab" ], { "title": "TGF\u03b2-activated kinase 1 deficiency effect on liver", "description": "Analysis of liver from 4-week old C57BL/6 males with hepatocyte-specific deletion of TGF\u03b2-activated kinase 1 (TAK1). In hepatocytes, TAK1 controls activation of both IKK/NF-\u03baB and JNK pathways. Results provide insight into the role of TAK1 in liver pathophysiology.", "type": "Expression profiling by array", "pubmed_id": "24983318", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE51962", "order": "none", "update_date": "Apr 06 2015", "subsets": [ { "dataset_id": "GDS5474", "description": "wild type", "sample_id": [ "GSM1256112", "GSM1256113" ], "type": "genotype/variation", "id": "GDS5474_1" }, { "dataset_id": "GDS5474", "description": "hepatocyte specific TAK1 knockout", "sample_id": [ "GSM1256114", "GSM1256115" ], "type": "genotype/variation", "id": "GDS5474_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5474", "version": 1.0, "instances": "4", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5474.tab", "compression": "gz" } ], [ [ "GDS5496.tab" ], { "title": "miR-365 expression effect on lung adenocarcinoma cell line", "description": "Analysis of NCI-H441 adenocarcinoma cells expressing hsa-miR-365-2, a precursor of miR-365. Results identify targets of miR-365 and the role of miR-365 in the pulmonary transcriptional program responsible for lung development and malignancy.", "type": "Expression profiling by array", "pubmed_id": "22185756", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE33672", "order": "none", "update_date": "Jan 06 2015", "subsets": [ { "dataset_id": "GDS5496", "description": "control", "sample_id": [ "GSM832616", "GSM832617" ], "type": "protocol", "id": "GDS5496_1" }, { "dataset_id": "GDS5496", "description": "miR-365-2 expression", "sample_id": [ "GSM832614", "GSM832615" ], "type": "protocol", "id": "GDS5496_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5496", "version": 1.0, "instances": "4", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5496.tab", "compression": "gz" } ], [ [ "GDS5497.tab" ], { "title": "Methylphenidate effect on substantia nigra: dose response", "description": "Analysis of substantia nigra from animals treated on weekdays with 1 and 10 mg/kg methylphenidate (MPH) for 3 months. MPH is a psychostimulant used for the treatment of ADHD and narcolepsy. Results provide insight into the neurodegenerative consequences of MPH usage.", "type": "Expression profiling by array", "pubmed_id": "22470460", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE33619", "order": "none", "update_date": "Jan 06 2015", "subsets": [ { "dataset_id": "GDS5497", "description": "saline", "sample_id": [ "GSM831337", "GSM831338", "GSM831339" ], "type": "agent", "id": "GDS5497_1" }, { "dataset_id": "GDS5497", "description": "methylphenidate", "sample_id": [ "GSM831340", "GSM831341", "GSM831342", "GSM831343", "GSM831344", "GSM831345" ], "type": "agent", "id": "GDS5497_2" }, { "dataset_id": "GDS5497", "description": "control", "sample_id": [ "GSM831337", "GSM831338", "GSM831339" ], "type": "dose", "id": "GDS5497_3" }, { "dataset_id": "GDS5497", "description": "1 mg/kg methylphenidate", "sample_id": [ "GSM831343", "GSM831344", "GSM831345" ], "type": "dose", "id": "GDS5497_4" }, { "dataset_id": "GDS5497", "description": "10 mg/kg methylphenidate", "sample_id": [ "GSM831340", "GSM831341", "GSM831342" ], "type": "dose", "id": "GDS5497_5" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5497", "version": 1.0, "instances": "9", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5497.tab", "compression": "gz" } ], [ [ "GDS5498.tab" ], { "title": "Arsenic effect on lung epithelial cell line", "description": "Analysis of BEAS-2B lung epithelial cells treated with 2.5 uM arsenic trioxide for 6 months. Chronic arsenic exposure increases lung cancer risk. Results provide insight into the molecular mechanisms underlying lung carcinogenesis associated with arsenic exposure.", "type": "Expression profiling by array", "pubmed_id": "22521957", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE33520", "order": "none", "update_date": "Jan 06 2015", "subsets": [ { "dataset_id": "GDS5498", "description": "control", "sample_id": [ "GSM829381", "GSM829382", "GSM829383", "GSM829384" ], "type": "agent", "id": "GDS5498_1" }, { "dataset_id": "GDS5498", "description": "arsenic trioxide", "sample_id": [ "GSM829378", "GSM829379", "GSM829380" ], "type": "agent", "id": "GDS5498_2" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5498", "version": 1.0, "instances": "7", "variables": 29818, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5498.tab", "compression": "gz" } ], [ [ "GDS5499.tab" ], { "title": "Pulmonary hypertensions: PBMCs", "description": "Analysis of PBMCs from patients with idiopathic pulmonary arterial hypertension (IPAH), systemic sclerosis (SSc), SSc associated PAH (SSc-PAH), and SSc complicated by interstitial lung disease and PH (SSc-PH-ILD). Results provide insight into the molecular basis of the various disease groups.", "type": "Expression profiling by array", "pubmed_id": "22545094", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "140", "value_type": "transformed count", "reference_series": "GSE33463", "order": "none", "update_date": "Jan 14 2016", "subsets": [ { "dataset_id": "GDS5499", "description": "control", "sample_id": [ "GSM827665", "GSM827666", "GSM827667", "GSM827668", "GSM827669", "GSM827670", "GSM827671", "GSM827672", "GSM827673", "GSM827674", "GSM827675", "GSM827676", "GSM827677", "GSM827678", "GSM827679", "GSM827680", "GSM827681", "GSM827682", "GSM827683", "GSM827684", "GSM827685", "GSM827686", "GSM827687", "GSM827688", "GSM827689", "GSM827690", "GSM827691", "GSM827692", "GSM827693", "GSM827694", "GSM827695", "GSM827696", "GSM827697", "GSM827698", "GSM827699", "GSM827700", "GSM827701", "GSM827702", "GSM827703", "GSM827704", "GSM827705" ], "type": "disease state", "id": "GDS5499_1" }, { "dataset_id": "GDS5499", "description": "idiopathic pulmonary arterial hypertension", "sample_id": [ "GSM827706", "GSM827707", "GSM827708", "GSM827709", "GSM827710", "GSM827711", "GSM827712", "GSM827713", "GSM827714", "GSM827715", "GSM827716", "GSM827717", "GSM827718", "GSM827719", "GSM827720", "GSM827721", "GSM827722", "GSM827723", "GSM827724", "GSM827725", "GSM827726", "GSM827727", "GSM827728", "GSM827729", "GSM827730", "GSM827731", "GSM827732", "GSM827733", "GSM827734", "GSM827735" ], "type": "disease state", "id": "GDS5499_2" }, { "dataset_id": "GDS5499", "description": "scleroderma-associated pulmonary arterial hypertension", "sample_id": [ "GSM827736", "GSM827737", "GSM827738", "GSM827739", "GSM827740", "GSM827741", "GSM827742", "GSM827743", "GSM827744", "GSM827745", "GSM827746", "GSM827747", "GSM827748", "GSM827749", "GSM827750", "GSM827751", "GSM827752", "GSM827753", "GSM827754", "GSM827755", "GSM827756", "GSM827757", "GSM827758", "GSM827759", "GSM827760", "GSM827761", "GSM827762", "GSM827763", "GSM827764", "GSM827765", "GSM827766", "GSM827767", "GSM827768", "GSM827769", "GSM827770", "GSM827771", "GSM827772", "GSM827773", "GSM827774", "GSM827775", "GSM827776", "GSM827777" ], "type": "disease state", "id": "GDS5499_3" }, { "dataset_id": "GDS5499", "description": "systemic sclerosis without pulmonary hypertension", "sample_id": [ "GSM827778", "GSM827779", "GSM827780", "GSM827781", "GSM827782", "GSM827783", "GSM827784", "GSM827785", "GSM827786", "GSM827787", "GSM827788", "GSM827789", "GSM827790", "GSM827791", "GSM827792", "GSM827793", "GSM827794", "GSM827795", "GSM827796" ], "type": "disease state", "id": "GDS5499_4" }, { "dataset_id": "GDS5499", "description": "systemic sclerosis SSc complicated by interstitial lung disease and pulmonary hypertension", "sample_id": [ "GSM827797", "GSM827798", "GSM827799", "GSM827800", "GSM827801", "GSM827802", "GSM827803", "GSM827804" ], "type": "disease state", "id": "GDS5499_5" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5499", "version": 1.0, "instances": "140", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5499.tab", "compression": "gz" } ], [ [ "GDS5500.tab" ], { "title": "Stem cell antigen-1 deficient mammary tumor", "description": "Analysis of mammary tumors from mutants lacking stem cell antigen-1 (Sca-1), a glycerophosphatidylinositol-anchored protein. Tumorigenesis induced by medroxyprogesterone and 7,12dimethylbenz(a)anthracene treatment. Results provide insight into the role of Sca-1 in mammary gland tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "21955520", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE31954", "order": "none", "update_date": "Feb 10 2015", "subsets": [ { "dataset_id": "GDS5500", "description": "wild type", "sample_id": [ "GSM791729", "GSM791731" ], "type": "genotype/variation", "id": "GDS5500_1" }, { "dataset_id": "GDS5500", "description": "Sca-1 null", "sample_id": [ "GSM791730", "GSM791732" ], "type": "genotype/variation", "id": "GDS5500_2" }, { "dataset_id": "GDS5500", "description": "mammary tumor", "sample_id": [ "GSM791729", "GSM791730" ], "type": "tissue", "id": "GDS5500_3" }, { "dataset_id": "GDS5500", "description": "mammary gland", "sample_id": [ "GSM791731", "GSM791732" ], "type": "tissue", "id": "GDS5500_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5500", "version": 1.0, "instances": "4", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5500.tab", "compression": "gz" } ], [ [ "GDS5501.tab" ], { "title": "Progranulin deficiency effect on various brain regions: time course", "description": "Analysis of brain cortices, cerebella, and hippocampi of progranulin (GRN) deficient mutants at ages 2, 6, and 9 months. GRN mutations cause frontotemporal dementia. Results provide insight into the function of GRN in the central nervous system.", "type": "Expression profiling by array", "pubmed_id": "21943601", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "99", "value_type": "transformed count", "reference_series": "GSE31840", "order": "none", "update_date": "Jan 08 2015", "subsets": [ { "dataset_id": "GDS5501", "description": "cortex", "sample_id": [ "GSM789717", "GSM789721", "GSM789723", "GSM789726", "GSM789728", "GSM789730", "GSM789734", "GSM789735", "GSM789744", "GSM789745", "GSM789747", "GSM789748", "GSM789754", "GSM789755", "GSM789756", "GSM789758", "GSM789762", "GSM789766", "GSM789770", "GSM789772", "GSM789773", "GSM789775", "GSM789778", "GSM789780", "GSM789781", "GSM789783", "GSM789784", "GSM789788", "GSM789793", "GSM789795", "GSM789801", "GSM789803", "GSM789807", "GSM789811", "GSM789813" ], "type": "tissue", "id": "GDS5501_1" }, { "dataset_id": "GDS5501", "description": "cerebellum", "sample_id": [ "GSM789719", "GSM789722", "GSM789725", "GSM789727", "GSM789729", "GSM789731", "GSM789732", "GSM789738", "GSM789739", "GSM789740", "GSM789742", "GSM789752", "GSM789753", "GSM789761", "GSM789767", "GSM789774", "GSM789777", "GSM789779", "GSM789785", "GSM789786", "GSM789787", "GSM789789", "GSM789790", "GSM789792", "GSM789794", "GSM789796", "GSM789800", "GSM789802", "GSM789805", "GSM789806", "GSM789810", "GSM789814" ], "type": "tissue", "id": "GDS5501_2" }, { "dataset_id": "GDS5501", "description": "hippocampus", "sample_id": [ "GSM789718", "GSM789720", "GSM789724", "GSM789733", "GSM789736", "GSM789737", "GSM789741", "GSM789743", "GSM789746", "GSM789749", "GSM789750", "GSM789751", "GSM789757", "GSM789759", "GSM789760", "GSM789763", "GSM789764", "GSM789765", "GSM789768", "GSM789769", "GSM789771", "GSM789776", "GSM789782", "GSM789791", "GSM789797", "GSM789798", "GSM789799", "GSM789804", "GSM789808", "GSM789809", "GSM789812", "GSM789815" ], "type": "tissue", "id": "GDS5501_3" }, { "dataset_id": "GDS5501", "description": "progranulin homozygous null", "sample_id": [ "GSM789718", "GSM789722", "GSM789725", "GSM789726", "GSM789733", "GSM789738", "GSM789744", "GSM789746", "GSM789748", "GSM789749", "GSM789752", "GSM789754", "GSM789755", "GSM789760", "GSM789761", "GSM789762", "GSM789772", "GSM789776", "GSM789778", "GSM789782", "GSM789786", "GSM789788", "GSM789792", "GSM789793", "GSM789794", "GSM789800", "GSM789801", "GSM789804", "GSM789805", "GSM789807", "GSM789809", "GSM789810", "GSM789812", "GSM789815" ], "type": "genotype/variation", "id": "GDS5501_4" }, { "dataset_id": "GDS5501", "description": "progranulin heterozygous null", "sample_id": [ "GSM789717", "GSM789720", "GSM789723", "GSM789729", "GSM789730", "GSM789731", "GSM789732", "GSM789734", "GSM789736", "GSM789740", "GSM789743", "GSM789751", "GSM789753", "GSM789758", "GSM789759", "GSM789763", "GSM789766", "GSM789769", "GSM789771", "GSM789773", "GSM789774", "GSM789775", "GSM789784", "GSM789787", "GSM789789", "GSM789790", "GSM789795", "GSM789797", "GSM789798", "GSM789806", "GSM789808", "GSM789813", "GSM789814" ], "type": "genotype/variation", "id": "GDS5501_5" }, { "dataset_id": "GDS5501", "description": "wild type", "sample_id": [ "GSM789719", "GSM789721", "GSM789724", "GSM789727", "GSM789728", "GSM789735", "GSM789737", "GSM789739", "GSM789741", "GSM789742", "GSM789745", "GSM789747", "GSM789750", "GSM789756", "GSM789757", "GSM789764", "GSM789765", "GSM789767", "GSM789768", "GSM789770", "GSM789777", "GSM789779", "GSM789780", "GSM789781", "GSM789783", "GSM789785", "GSM789791", "GSM789796", "GSM789799", "GSM789802", "GSM789803", "GSM789811" ], "type": "genotype/variation", "id": "GDS5501_6" }, { "dataset_id": "GDS5501", "description": "female", "sample_id": [ "GSM789718", "GSM789719", "GSM789720", "GSM789723", "GSM789725", "GSM789728", "GSM789729", "GSM789731", "GSM789734", "GSM789736", "GSM789737", "GSM789738", "GSM789744", "GSM789746", "GSM789747", "GSM789749", "GSM789750", "GSM789755", "GSM789756", "GSM789757", "GSM789759", "GSM789762", "GSM789764", "GSM789767", "GSM789771", "GSM789778", "GSM789779", "GSM789780", "GSM789784", "GSM789789", "GSM789793", "GSM789796", "GSM789799", "GSM789800", "GSM789803", "GSM789804", "GSM789809", "GSM789810", "GSM789811" ], "type": "gender", "id": "GDS5501_7" }, { "dataset_id": "GDS5501", "description": "male", "sample_id": [ "GSM789717", "GSM789721", "GSM789722", "GSM789724", "GSM789726", "GSM789727", "GSM789730", "GSM789732", "GSM789733", "GSM789735", "GSM789739", "GSM789740", "GSM789741", "GSM789742", "GSM789743", "GSM789745", "GSM789748", "GSM789751", "GSM789752", "GSM789753", "GSM789754", "GSM789758", "GSM789760", "GSM789761", "GSM789763", "GSM789765", "GSM789766", "GSM789768", "GSM789769", "GSM789770", "GSM789772", "GSM789773", "GSM789774", "GSM789775", "GSM789776", "GSM789777", "GSM789781", "GSM789782", "GSM789783", "GSM789785", "GSM789786", "GSM789787", "GSM789788", "GSM789790", "GSM789791", "GSM789792", "GSM789794", "GSM789795", "GSM789797", "GSM789798", "GSM789801", "GSM789802", "GSM789805", "GSM789806", "GSM789807", "GSM789808", "GSM789812", "GSM789813", "GSM789814", "GSM789815" ], "type": "gender", "id": "GDS5501_8" }, { "dataset_id": "GDS5501", "description": "2 mo", "sample_id": [ "GSM789717", "GSM789718", "GSM789719", "GSM789720", "GSM789721", "GSM789722", "GSM789723", "GSM789724", "GSM789725", "GSM789726", "GSM789727", "GSM789728", "GSM789729", "GSM789730", "GSM789731", "GSM789732", "GSM789733", "GSM789734", "GSM789735", "GSM789736", "GSM789737", "GSM789738", "GSM789739", "GSM789740", "GSM789741", "GSM789742", "GSM789743", "GSM789744", "GSM789745", "GSM789746", "GSM789747", "GSM789748", "GSM789749", "GSM789750", "GSM789751", "GSM789752", "GSM789753", "GSM789754", "GSM789755", "GSM789756", "GSM789757", "GSM789758", "GSM789759", "GSM789760", "GSM789761", "GSM789762" ], "type": "age", "id": "GDS5501_9" }, { "dataset_id": "GDS5501", "description": "6 mo", "sample_id": [ "GSM789764", "GSM789766", "GSM789767", "GSM789771", "GSM789772", "GSM789778", "GSM789779", "GSM789780", "GSM789782", "GSM789784", "GSM789789", "GSM789790", "GSM789792", "GSM789794", "GSM789796", "GSM789797", "GSM789799", "GSM789800", "GSM789803", "GSM789804", "GSM789806", "GSM789807", "GSM789808", "GSM789811", "GSM789812", "GSM789813" ], "type": "age", "id": "GDS5501_10" }, { "dataset_id": "GDS5501", "description": "9 mo", "sample_id": [ "GSM789763", "GSM789765", "GSM789768", "GSM789769", "GSM789770", "GSM789773", "GSM789774", "GSM789775", "GSM789776", "GSM789777", "GSM789781", "GSM789783", "GSM789785", "GSM789786", "GSM789787", "GSM789788", "GSM789791", "GSM789793", "GSM789795", "GSM789798", "GSM789801", "GSM789802", "GSM789805", "GSM789809", "GSM789810", "GSM789814", "GSM789815" ], "type": "age", "id": "GDS5501_11" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5501", "version": 1.0, "instances": "99", "variables": 18038, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5501.tab", "compression": "gz" } ], [ [ "GDS5502.tab" ], { "title": "Small molecule GW8510 effect on pancreatic alpha cell", "description": "Analysis of pancreatic alpha cells treated with GW8510, a CDK2 inhibitor. Insulin expression is largely restricted to pancreatic beta cells. These results, together with those of GDS5503, provide insight into potential mechanisms of insulin induction by non-beta pancreatic cell types.", "type": "Expression profiling by array", "pubmed_id": "22242153", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE31102", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5502", "description": "control", "sample_id": [ "GSM770002", "GSM770003", "GSM770004" ], "type": "agent", "id": "GDS5502_1" }, { "dataset_id": "GDS5502", "description": "GW8510", "sample_id": [ "GSM770005", "GSM770006", "GSM770007" ], "type": "agent", "id": "GDS5502_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5502", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5502.tab", "compression": "gz" } ], [ [ "GDS5503.tab" ], { "title": "Small molecule GW8510 effect on pancreatic beta cell", "description": "Analysis of pancreatic beta cells treated with GW8510, a CDK2 inhibitor. Insulin expression is largely restricted to pancreatic beta cells. These results, together with those of GDS5502, provide insight into potential mechanisms of insulin induction by non-beta pancreatic cell types.", "type": "Expression profiling by array", "pubmed_id": "22242153", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE31102", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5503", "description": "control", "sample_id": [ "GSM770008", "GSM770009", "GSM770010" ], "type": "agent", "id": "GDS5503_1" }, { "dataset_id": "GDS5503", "description": "GW8510", "sample_id": [ "GSM770011", "GSM770012", "GSM770013" ], "type": "agent", "id": "GDS5503_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5503", "version": 1.0, "instances": "6", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5503.tab", "compression": "gz" } ], [ [ "GDS5519.tab" ], { "title": "5-azacytidine effect on mesenchymal progenitor cell line", "description": "Analysis of C2C12 mesenchymal progenitor cells treated with 5-azacytidine (5AC). 5AC is a DNA methylation inhibitor and induces genomic demethylation. Results provide insight into the role of DNA demethylation on skeletal myotube maturation.", "type": "Expression profiling by array", "pubmed_id": "21795504", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE30192", "order": "none", "update_date": "Jan 14 2015", "subsets": [ { "dataset_id": "GDS5519", "description": "control", "sample_id": [ "GSM747404", "GSM747405", "GSM747406" ], "type": "agent", "id": "GDS5519_1" }, { "dataset_id": "GDS5519", "description": "5-azacytidine", "sample_id": [ "GSM747407", "GSM747408", "GSM747409" ], "type": "agent", "id": "GDS5519_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5519", "version": 1.0, "instances": "6", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5519.tab", "compression": "gz" } ], [ [ "GDS552.tab" ], { "title": "Essential thrombocythemia megakaryocytes", "description": "Malignant bone marrow CD34+ thrombopoietin-treated megakaryocytes from essential thrombocythemia (ET) patients compared with normal megakaryocytes.", "type": "Expression profiling by array", "pubmed_id": "15271793", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE567", "order": "none", "update_date": "Apr 20 2004", "subsets": [ { "dataset_id": "GDS552", "description": "normal", "sample_id": [ "GSM8649" ], "type": "disease state", "id": "GDS552_1" }, { "dataset_id": "GDS552", "description": "ET", "sample_id": [ "GSM8650" ], "type": "disease state", "id": "GDS552_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS552", "version": 1.0, "instances": "2", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS552.tab", "compression": "gz" } ], [ [ "GDS5520.tab" ], { "title": "Rosiglitazone effect on adipose progenitor cells", "description": "Analysis of adipose progenitor cells from animals fed a diet supplemented with rosiglitazone (ROS) for 2 months. ROS is a thiazolidinedione antidiabetic drug. Results provide insight into the effect of chronic ROS administration on the stem cell properties of adipose progenitor cells.", "type": "Expression profiling by array", "pubmed_id": "21723509", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE30116", "order": "none", "update_date": "Jan 13 2016", "subsets": [ { "dataset_id": "GDS5520", "description": "control", "sample_id": [ "GSM745628", "GSM745630", "GSM745632" ], "type": "agent", "id": "GDS5520_1" }, { "dataset_id": "GDS5520", "description": "rosiglitazone", "sample_id": [ "GSM745629", "GSM745631", "GSM745633" ], "type": "agent", "id": "GDS5520_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5520", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5520.tab", "compression": "gz" } ], [ [ "GDS5525.tab" ], { "title": "miR-205 silencing effect on prostate epithelial cell line", "description": "Analysis of RWPE-1 prostate epithelial cells following silencing of miR-205. miR-205 silenced using an antisense locked nucleic acid targeting miR-205. Results provide insight into the role of miR-205 in prostate epithelial cells.", "type": "Expression profiling by array", "pubmed_id": "22555458", "platform": "GPL6947", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "49576", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE29782", "order": "none", "update_date": "Jan 14 2015", "subsets": [ { "dataset_id": "GDS5525", "description": "control", "sample_id": [ "GSM738189", "GSM738190", "GSM738191" ], "type": "protocol", "id": "GDS5525_1" }, { "dataset_id": "GDS5525", "description": "miR-205 silencing", "sample_id": [ "GSM738192", "GSM738193", "GSM738194" ], "type": "protocol", "id": "GDS5525_2" } ], "taxid": "9606", "genes": 39955, "aggregation_function": "mean", "name": "GDS5525", "version": 1.0, "instances": "6", "variables": 39957, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5525.tab", "compression": "gz" } ], [ [ "GDS5526.tab" ], { "title": "Bile duct ligation effect on the liver", "description": "Analysis of livers of animals following bile duct ligation to induce extrahepatic cholestasis. Biliary tract obstruction is a common mechanism of hepatic injury. Results provide insight into molecular mechanisms that influence injury and repair in cholestatic liver disease.", "type": "Expression profiling by array", "pubmed_id": "16250054", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE29776", "order": "none", "update_date": "Jan 13 2016", "subsets": [ { "dataset_id": "GDS5526", "description": "control", "sample_id": [ "GSM738170", "GSM738171", "GSM738172" ], "type": "protocol", "id": "GDS5526_1" }, { "dataset_id": "GDS5526", "description": "bile duct ligation", "sample_id": [ "GSM738167", "GSM738168", "GSM738169" ], "type": "protocol", "id": "GDS5526_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS5526", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5526.tab", "compression": "gz" } ], [ [ "GDS5527.tab" ], { "title": "Rhabdomyosarcoma model", "description": "Analysis of rhabdomyosarcoma samples from A/J animals that are about 450 days old. A/J animals develop adult pleomorphic type rhabdomyosarcomas at a high frequency over 20 months of age. Results provide insight into the molecular pathogenesis of rhabdomyosarcoma.", "type": "Expression profiling by array", "pubmed_id": "21853140", "platform": "GPL6481", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "46643", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE29775", "order": "none", "update_date": "Jan 13 2016", "subsets": [ { "dataset_id": "GDS5527", "description": "control", "sample_id": [ "GSM738156", "GSM738160", "GSM738161", "GSM738162", "GSM738163", "GSM738164", "GSM738165", "GSM738166" ], "type": "tissue", "id": "GDS5527_1" }, { "dataset_id": "GDS5527", "description": "rhabdomyosarcoma tumor", "sample_id": [ "GSM738155", "GSM738157", "GSM738158", "GSM738159" ], "type": "tissue", "id": "GDS5527_2" }, { "dataset_id": "GDS5527", "description": "A/J", "sample_id": [ "GSM738156", "GSM738160", "GSM738161", "GSM738162", "GSM738164", "GSM738165", "GSM738166", "GSM738155", "GSM738157", "GSM738158", "GSM738159" ], "type": "strain", "id": "GDS5527_3" }, { "dataset_id": "GDS5527", "description": "BALB/c", "sample_id": [ "GSM738163" ], "type": "strain", "id": "GDS5527_4" } ], "taxid": "10090", "genes": 31595, "aggregation_function": "mean", "name": "GDS5527", "version": 1.0, "instances": "12", "variables": 31598, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5527.tab", "compression": "gz" } ], [ [ "GDS5528.tab" ], { "title": "White adipose tissue development", "description": "Analysis of developing white adipose tissues (WAT) of C57BL/6 animals at ages 15.5 embyronic days to 12 postnatal days. Results provide insight into the molecular mechanisms underlying the regulation of WAT development.", "type": "Expression profiling by array", "pubmed_id": "21989915", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE29502", "order": "ordered", "update_date": "Jan 14 2015", "subsets": [ { "dataset_id": "GDS5528", "description": "E15.5", "sample_id": [ "GSM730028" ], "type": "age", "id": "GDS5528_1" }, { "dataset_id": "GDS5528", "description": "E16.5", "sample_id": [ "GSM730029" ], "type": "age", "id": "GDS5528_2" }, { "dataset_id": "GDS5528", "description": "E17.5", "sample_id": [ "GSM730030" ], "type": "age", "id": "GDS5528_3" }, { "dataset_id": "GDS5528", "description": "E18.5", "sample_id": [ "GSM730031" ], "type": "age", "id": "GDS5528_4" }, { "dataset_id": "GDS5528", "description": "P0", "sample_id": [ "GSM730032" ], "type": "age", "id": "GDS5528_5" }, { "dataset_id": "GDS5528", "description": "P2", "sample_id": [ "GSM730033" ], "type": "age", "id": "GDS5528_6" }, { "dataset_id": "GDS5528", "description": "P5", "sample_id": [ "GSM730034" ], "type": "age", "id": "GDS5528_7" }, { "dataset_id": "GDS5528", "description": "P12", "sample_id": [ "GSM730035" ], "type": "age", "id": "GDS5528_8" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5528", "version": 1.0, "instances": "8", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5528.tab", "compression": "gz" } ], [ [ "GDS553.tab" ], { "title": "Mesangioblast stem cell clone comparison (MG-U74A)", "description": "Comparison of mesangioblast clone lines D16 and D351 derived from E9.5 C57BL6 embryo dorsal aorta. Mesangioblast vessel-associated stem cells have possible use in therapy of primary myopathies.", "type": "Expression profiling by array", "pubmed_id": "15155529", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE563", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS553", "description": "D16", "sample_id": [ "GSM8510" ], "type": "cell line", "id": "GDS553_1" }, { "dataset_id": "GDS553", "description": "D351", "sample_id": [ "GSM8513" ], "type": "cell line", "id": "GDS553_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS553", "version": 1.0, "instances": "2", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS553.tab", "compression": "gz" } ], [ [ "GDS554.tab" ], { "title": "Mesangioblast stem cell clone comparison (MG-U74B)", "description": "Comparison of mesangioblast clone lines D16 and D351 derived from E9.5 C57BL6 embryo dorsal aorta. Mesangioblast vessel-associated stem cells have possible use in therapy of primary myopathies.", "type": "Expression profiling by array", "pubmed_id": "15155529", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE554", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS554", "description": "D16", "sample_id": [ "GSM8511" ], "type": "cell line", "id": "GDS554_1" }, { "dataset_id": "GDS554", "description": "D351", "sample_id": [ "GSM8514" ], "type": "cell line", "id": "GDS554_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS554", "version": 1.0, "instances": "2", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS554.tab", "compression": "gz" } ], [ [ "GDS5544.tab" ], { "title": "Edelfosine effect on stimulated CD4+ T cells", "description": "Analysis of stimulated CD4+ T cells (derived from buffy coat PBMCs) treated with edelfosine at 3.3\u00b5g/ml. Edelfosine is a cytotoxic drug taken up by highly proliferating cells such as activated immune cells. Results provide insight into the molecular basis of edelfosine action in immune T cells.", "type": "Expression profiling by array", "pubmed_id": "24667731", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE44392", "order": "none", "update_date": "Apr 22 2015", "subsets": [ { "dataset_id": "GDS5544", "description": "stimulated", "sample_id": [ "GSM1084272", "GSM1084273", "GSM1084274", "GSM1084275", "GSM1084276", "GSM1084277", "GSM1084278", "GSM1084279" ], "type": "protocol", "id": "GDS5544_1" }, { "dataset_id": "GDS5544", "description": "unstimulated", "sample_id": [ "GSM1084260", "GSM1084261", "GSM1084262", "GSM1084263" ], "type": "protocol", "id": "GDS5544_2" }, { "dataset_id": "GDS5544", "description": "control", "sample_id": [ "GSM1084260", "GSM1084261", "GSM1084262", "GSM1084263", "GSM1084272", "GSM1084273", "GSM1084274", "GSM1084275" ], "type": "agent", "id": "GDS5544_3" }, { "dataset_id": "GDS5544", "description": "edelfosine", "sample_id": [ "GSM1084276", "GSM1084277", "GSM1084278", "GSM1084279" ], "type": "agent", "id": "GDS5544_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5544", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5544.tab", "compression": "gz" } ], [ [ "GDS555.tab" ], { "title": "Mesangioblast stem cell clone comparison (MG-U74C)", "description": "Comparison of mesangioblast clone lines D16 and D351 derived from E9.5 C57BL6 embryo dorsal aorta. Mesangioblast vessel-associated stem cells have possible use in therapy of primary myopathies.", "type": "Expression profiling by array", "pubmed_id": "15155529", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE555", "order": "none", "update_date": "Apr 20 2004", "subsets": [ { "dataset_id": "GDS555", "description": "D16", "sample_id": [ "GSM8512" ], "type": "cell line", "id": "GDS555_1" }, { "dataset_id": "GDS555", "description": "D351", "sample_id": [ "GSM8515" ], "type": "cell line", "id": "GDS555_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS555", "version": 1.0, "instances": "2", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS555.tab", "compression": "gz" } ], [ [ "GDS559.tab" ], { "title": "Inflammatory bowel disease (HG-U133A)", "description": "Investigation into inflammatory bowel disease gene expression. Terminal ileum and colon transversum biopsies from Crohn\u00b4s disease, ulcerative colitis and control patients examined.", "type": "Expression profiling by array", "pubmed_id": [ "17461471", "17058067" ], "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1152", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS559", "description": "ileum", "sample_id": [ "GSM19135", "GSM19138", "GSM19140" ], "type": "tissue", "id": "GDS559_1" }, { "dataset_id": "GDS559", "description": "colon", "sample_id": [ "GSM19137", "GSM19139", "GSM19141" ], "type": "tissue", "id": "GDS559_2" }, { "dataset_id": "GDS559", "description": "control", "sample_id": [ "GSM19135", "GSM19137" ], "type": "disease state", "id": "GDS559_3" }, { "dataset_id": "GDS559", "description": "Crohn\u00b4s disease", "sample_id": [ "GSM19138", "GSM19139" ], "type": "disease state", "id": "GDS559_4" }, { "dataset_id": "GDS559", "description": "ulcerative colitis", "sample_id": [ "GSM19140", "GSM19141" ], "type": "disease state", "id": "GDS559_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS559", "version": 1.0, "instances": "6", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS559.tab", "compression": "gz" } ], [ [ "GDS56.tab" ], { "title": "Allergic response to ragweed in lung (U74Av2)", "description": "Analysis of allergic response to an immunogenic protein of ragweed pollen in lung. Determination of the temporal relationship between gene expression and airway allergen challenge.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE483", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS56", "description": "control", "sample_id": [ "GSM1233", "GSM1239", "GSM1245", "GSM1251" ], "type": "agent", "id": "GDS56_1" }, { "dataset_id": "GDS56", "description": "allergen", "sample_id": [ "GSM1275" ], "type": "agent", "id": "GDS56_2" }, { "dataset_id": "GDS56", "description": "24 hour", "sample_id": [ "GSM1233", "GSM1239" ], "type": "time", "id": "GDS56_3" }, { "dataset_id": "GDS56", "description": "72 hour", "sample_id": [ "GSM1245", "GSM1251", "GSM1275" ], "type": "time", "id": "GDS56_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS56", "version": 1.0, "instances": "5", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS56.tab", "compression": "gz" } ], [ [ "GDS560.tab" ], { "title": "Inflammatory bowel disease (HG-U133B)", "description": "Investigation into inflammatory bowel disease gene expression. Terminal ileum and colon transversum biopsies from Crohn\u00b4s disease, ulcerative colitis and control patients examined.", "type": "Expression profiling by array", "pubmed_id": [ "17461471", "17058067" ], "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1152", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS560", "description": "ileum", "sample_id": [ "GSM19142", "GSM19144", "GSM19147" ], "type": "tissue", "id": "GDS560_1" }, { "dataset_id": "GDS560", "description": "colon", "sample_id": [ "GSM19143", "GSM19145", "GSM19146" ], "type": "tissue", "id": "GDS560_2" }, { "dataset_id": "GDS560", "description": "control", "sample_id": [ "GSM19142", "GSM19143" ], "type": "disease state", "id": "GDS560_3" }, { "dataset_id": "GDS560", "description": "Crohn\u00b4s disease", "sample_id": [ "GSM19145", "GSM19147" ], "type": "disease state", "id": "GDS560_4" }, { "dataset_id": "GDS560", "description": "ulcerative colitis", "sample_id": [ "GSM19144", "GSM19146" ], "type": "disease state", "id": "GDS560_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS560", "version": 1.0, "instances": "6", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS560.tab", "compression": "gz" } ], [ [ "GDS5600.tab" ], { "title": "Acute myeloid leukemia cell line Kasumi-1 response to dasatinib treatment and withdrawal", "description": "Analysis of dasatinib-sensitive, KITmut t(8;21) AML cell line Kasumi-1 treated with dasatinib for 12 wks giving rise to R48 cells. After 1 wk of dasatinib cessation, R48 cells give rise to PR48 cells. Results provide insight into molecular effects of long-term dasatinib treatment on t(8;21) AML.", "type": "Expression profiling by array", "pubmed_id": "24211243", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE39073", "order": "none", "update_date": "Jun 16 2015", "subsets": [ { "dataset_id": "GDS5600", "description": "control", "sample_id": [ "GSM955189", "GSM955190", "GSM955191" ], "type": "agent", "id": "GDS5600_1" }, { "dataset_id": "GDS5600", "description": "dasatinib", "sample_id": [ "GSM955192", "GSM955193", "GSM955194", "GSM955195", "GSM955196", "GSM955197" ], "type": "agent", "id": "GDS5600_2" }, { "dataset_id": "GDS5600", "description": "untreated", "sample_id": [ "GSM955189", "GSM955190", "GSM955191" ], "type": "protocol", "id": "GDS5600_3" }, { "dataset_id": "GDS5600", "description": "12wk treatment", "sample_id": [ "GSM955192", "GSM955193", "GSM955194" ], "type": "protocol", "id": "GDS5600_4" }, { "dataset_id": "GDS5600", "description": "12wk treatment, 1wk withdrawal", "sample_id": [ "GSM955195", "GSM955196", "GSM955197" ], "type": "protocol", "id": "GDS5600_5" }, { "dataset_id": "GDS5600", "description": "Kasumi-1", "sample_id": [ "GSM955189", "GSM955190", "GSM955191" ], "type": "cell line", "id": "GDS5600_6" }, { "dataset_id": "GDS5600", "description": "R48 clone", "sample_id": [ "GSM955192", "GSM955193", "GSM955194" ], "type": "cell line", "id": "GDS5600_7" }, { "dataset_id": "GDS5600", "description": "PR48 clone", "sample_id": [ "GSM955195", "GSM955196", "GSM955197" ], "type": "cell line", "id": "GDS5600_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5600", "version": 1.0, "instances": "9", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5600.tab", "compression": "gz" } ], [ [ "GDS5601.tab" ], { "title": "Nanoemulsion adjuvant W805EC effect on JAWS II dendritic cells: time course", "description": "Analysis of JAWS II DCs incubated with nanoemulsion (NE) adjuvant W805EC for up to 24 hrs. W805EC is an oil-in-water emulsion with nanodroplets similar in size to many viruses infecting the nasal mucosa. Results provide insight into the molecular basis of the adjuvant activity of W805EC NE in DCs.", "type": "Expression profiling by array", "pubmed_id": "24532579", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE51804", "order": "none", "update_date": "Nov 02 2015", "subsets": [ { "dataset_id": "GDS5601", "description": "W805EC", "sample_id": [ "GSM1252983", "GSM1252988" ], "type": "protocol", "id": "GDS5601_1" }, { "dataset_id": "GDS5601", "description": "W805EC + rPA", "sample_id": [ "GSM1252984", "GSM1252989" ], "type": "protocol", "id": "GDS5601_2" }, { "dataset_id": "GDS5601", "description": "rPA", "sample_id": [ "GSM1252985", "GSM1252990" ], "type": "protocol", "id": "GDS5601_3" }, { "dataset_id": "GDS5601", "description": "LPS", "sample_id": [ "GSM1252986", "GSM1252991" ], "type": "protocol", "id": "GDS5601_4" }, { "dataset_id": "GDS5601", "description": "PBS", "sample_id": [ "GSM1252982", "GSM1252987" ], "type": "protocol", "id": "GDS5601_5" }, { "dataset_id": "GDS5601", "description": "6 hours", "sample_id": [ "GSM1252982", "GSM1252986", "GSM1252985", "GSM1252984", "GSM1252983" ], "type": "time", "id": "GDS5601_6" }, { "dataset_id": "GDS5601", "description": "24 hours", "sample_id": [ "GSM1252987", "GSM1252991", "GSM1252990", "GSM1252989", "GSM1252988" ], "type": "time", "id": "GDS5601_7" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5601", "version": 1.0, "instances": "10", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5601.tab", "compression": "gz" } ], [ [ "GDS5602.tab" ], { "title": "Transcription factor Inhibitor of differentiation 3 knockout effect on invariant natural killer T cells: developmental time course", "description": "Analysis of stage 1 (Tet+CD24-CD44-NK1.1-) and stage 2 (Tet+CD24-CD44+NK1.1-) invariant natural killer T (iNKT) cells FACS-sorted from inhibitor of differentiation 3 (Id3) knockout thymus. Results provide insight into the role of transcriptional regulator ID3 during iNKT cell maturation in thymus.", "type": "Expression profiling by array", "pubmed_id": "24244015", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE50933", "order": "none", "update_date": "Jun 30 2015", "subsets": [ { "dataset_id": "GDS5602", "description": "wild type", "sample_id": [ "GSM1232676", "GSM1232677", "GSM1232678", "GSM1232679", "GSM1232680" ], "type": "genotype/variation", "id": "GDS5602_1" }, { "dataset_id": "GDS5602", "description": "Id3 knockout", "sample_id": [ "GSM1232681", "GSM1232682", "GSM1232683", "GSM1232684", "GSM1232685" ], "type": "genotype/variation", "id": "GDS5602_2" }, { "dataset_id": "GDS5602", "description": "stage 1", "sample_id": [ "GSM1232676", "GSM1232677", "GSM1232681", "GSM1232682" ], "type": "development stage", "id": "GDS5602_3" }, { "dataset_id": "GDS5602", "description": "stage 2", "sample_id": [ "GSM1232678", "GSM1232679", "GSM1232680", "GSM1232683", "GSM1232684", "GSM1232685" ], "type": "development stage", "id": "GDS5602_4" }, { "dataset_id": "GDS5602", "description": "Tet+CD24-CD44-NK1.1-", "sample_id": [ "GSM1232676", "GSM1232677", "GSM1232681", "GSM1232682" ], "type": "cell type", "id": "GDS5602_5" }, { "dataset_id": "GDS5602", "description": "Tet+CD24-CD44+NK1.1-", "sample_id": [ "GSM1232678", "GSM1232679", "GSM1232680", "GSM1232683", "GSM1232684", "GSM1232685" ], "type": "cell type", "id": "GDS5602_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5602", "version": 1.0, "instances": "10", "variables": 26685, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5602.tab", "compression": "gz" } ], [ [ "GDS5603.tab" ], { "title": "Ventricular cardiomyocytes generated in vitro from embryonic stem cells", "description": "Analysis of ventricular cardiomyocytes derived from HES2 embryonic stem cells (hESC-VCMs). The in vivo counterparts (undifferentiated HES2 cells, fetal VCMs, and adult VCMs) were also examined. Results provide insight into molecular mechanisms underlying the developmental status of hESC-VCMs.", "type": "Expression profiling by array", "pubmed_id": "24204964", "platform": "GPL6884", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48803", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE50704", "order": "none", "update_date": "Aug 05 2015", "subsets": [ { "dataset_id": "GDS5603", "description": "undifferentiated embryonic stem cell", "sample_id": [ "GSM1226629", "GSM1226633" ], "type": "cell type", "id": "GDS5603_1" }, { "dataset_id": "GDS5603", "description": "embryonic stem cell-derived ventricular cardiomyocyte", "sample_id": [ "GSM1226630", "GSM1226632" ], "type": "cell type", "id": "GDS5603_2" }, { "dataset_id": "GDS5603", "description": "fetal ventricular cardiomyocyte", "sample_id": [ "GSM1226636", "GSM1226637", "GSM1226638" ], "type": "cell type", "id": "GDS5603_3" }, { "dataset_id": "GDS5603", "description": "adult ventricular cardiomyocyte", "sample_id": [ "GSM1226631", "GSM1226634", "GSM1226635" ], "type": "cell type", "id": "GDS5603_4" } ], "taxid": "9606", "genes": 39531, "aggregation_function": "mean", "name": "GDS5603", "version": 1.0, "instances": "10", "variables": 39533, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5603.tab", "compression": "gz" } ], [ [ "GDS5604.tab" ], { "title": "Fibroblast growth factor 2 effect on lens epithelia explant cultures: time course", "description": "Analysis of lens explant cultures grown overnight in the presence of 5 ng/mL FGF2 to promote proliferation and survival, then treated with 100 ng/mL FGF2 for up to 24hr to induce differentiation. Results provide insight into the molecular basis of FGF2-induced lens fiber cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "24142921", "platform": "GPL1355", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31099", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE50604", "order": "ordered", "update_date": "Aug 05 2015", "subsets": [ { "dataset_id": "GDS5604", "description": "control", "sample_id": [ "GSM1224530", "GSM1224531" ], "type": "growth protocol", "id": "GDS5604_1" }, { "dataset_id": "GDS5604", "description": "FGF2 (100 ng/mL)", "sample_id": [ "GSM1224532", "GSM1224533", "GSM1224534", "GSM1224535", "GSM1224536", "GSM1224537", "GSM1224538", "GSM1224539" ], "type": "growth protocol", "id": "GDS5604_2" }, { "dataset_id": "GDS5604", "description": "hour 0", "sample_id": [ "GSM1224530", "GSM1224531" ], "type": "time", "id": "GDS5604_3" }, { "dataset_id": "GDS5604", "description": "hour 2", "sample_id": [ "GSM1224532", "GSM1224533" ], "type": "time", "id": "GDS5604_4" }, { "dataset_id": "GDS5604", "description": "hour 4", "sample_id": [ "GSM1224534", "GSM1224535" ], "type": "time", "id": "GDS5604_5" }, { "dataset_id": "GDS5604", "description": "hour 12", "sample_id": [ "GSM1224536", "GSM1224537" ], "type": "time", "id": "GDS5604_6" }, { "dataset_id": "GDS5604", "description": "hour 24", "sample_id": [ "GSM1224538", "GSM1224539" ], "type": "time", "id": "GDS5604_7" } ], "taxid": "10116", "genes": 24212, "aggregation_function": "mean", "name": "GDS5604", "version": 1.0, "instances": "10", "variables": 24215, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5604.tab", "compression": "gz" } ], [ [ "GDS5605.tab" ], { "title": "Listeria monocytogenes infection effect on transcriptional repressor BLIMP1-deficient macrophage", "description": "Analysis of B lymphocyte-induced maturation protein 1 (BLIMP1) conditional knockout macrophages infected with Listeria monocytogenes for 2 hr. Results provide insight into BLIMP1-mediated regulatory mechanisms in macrophages in early host defense against intracellular bacteria.", "type": "Expression profiling by array", "pubmed_id": "24477914", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE53145", "order": "none", "update_date": "Aug 04 2015", "subsets": [ { "dataset_id": "GDS5605", "description": "BLIMP1 conditional knockout", "sample_id": [ "GSM1282992", "GSM1282993", "GSM1282994", "GSM1282995", "GSM1282996", "GSM1282997" ], "type": "genotype/variation", "id": "GDS5605_1" }, { "dataset_id": "GDS5605", "description": "wild type", "sample_id": [ "GSM1282998", "GSM1282999", "GSM1283000", "GSM1283001", "GSM1283002", "GSM1283003" ], "type": "genotype/variation", "id": "GDS5605_2" }, { "dataset_id": "GDS5605", "description": "Listeria monocytogenes", "sample_id": [ "GSM1282992", "GSM1282993", "GSM1282994", "GSM1283001", "GSM1283002", "GSM1283003" ], "type": "infection", "id": "GDS5605_3" }, { "dataset_id": "GDS5605", "description": "uninfected", "sample_id": [ "GSM1282995", "GSM1282996", "GSM1282997", "GSM1282998", "GSM1282999", "GSM1283000" ], "type": "infection", "id": "GDS5605_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5605", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5605.tab", "compression": "gz" } ], [ [ "GDS5606.tab" ], { "title": "Androgen effect on runt-related transcription factor 1-deficient prostate cancer cell line", "description": "Analysis of androgen receptor (AR)-positive prostate cancer (PC) LNCaP cells depleted for runt-related transcription factor (RUNX1) by siRUNX1 transfection then treated with 10nM dihydrotestosterone (DHT). Results provide insight into the role of RUNX1 in AR-dependent PC.", "type": "Expression profiling by array", "pubmed_id": "25537508", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE62454", "order": "none", "update_date": "Aug 04 2015", "subsets": [ { "dataset_id": "GDS5606", "description": "RUNX1 knockdown", "sample_id": [ "GSM1527241", "GSM1527242" ], "type": "genotype/variation", "id": "GDS5606_1" }, { "dataset_id": "GDS5606", "description": "control", "sample_id": [ "GSM1527239", "GSM1527240" ], "type": "genotype/variation", "id": "GDS5606_2" }, { "dataset_id": "GDS5606", "description": "DHT", "sample_id": [ "GSM1527240", "GSM1527242" ], "type": "agent", "id": "GDS5606_3" }, { "dataset_id": "GDS5606", "description": "vehicle", "sample_id": [ "GSM1527239", "GSM1527241" ], "type": "agent", "id": "GDS5606_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5606", "version": 1.0, "instances": "4", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5606.tab", "compression": "gz" } ], [ [ "GDS5607.tab" ], { "title": "A 3-D ex vivo model of oral wound healing: primary gingival fibroblasts", "description": "Analysis of gingival fibroblasts populating sponge-type or gel-type collagen scaffolds loaded with platelet-derived growth factor-BB. Collagen scaffolds augment oral soft tissue to support wound repair. Results provide insight into molecular basis of cell population dynamics of collagen scaffolds.", "type": "Expression profiling by array", "pubmed_id": "25397671", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE61314", "order": "none", "update_date": "Aug 02 2015", "subsets": [ { "dataset_id": "GDS5607", "description": "sponge-type collagen scaffold", "sample_id": [ "GSM1501968", "GSM1501969" ], "type": "growth protocol", "id": "GDS5607_1" }, { "dataset_id": "GDS5607", "description": "gel-type collagen scaffold", "sample_id": [ "GSM1501970", "GSM1501971" ], "type": "growth protocol", "id": "GDS5607_2" }, { "dataset_id": "GDS5607", "description": "platelet-derived growth factor-BB", "sample_id": [ "GSM1501969", "GSM1501971" ], "type": "agent", "id": "GDS5607_3" }, { "dataset_id": "GDS5607", "description": "control", "sample_id": [ "GSM1501968", "GSM1501970" ], "type": "agent", "id": "GDS5607_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5607", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5607.tab", "compression": "gz" } ], [ [ "GDS5608.tab" ], { "title": "NF-\u03baB subunit p65 depletion effect on Ras-induced transformation model: cultured embryonic fibroblasts", "description": "Analysis of p65+/+Ras and p65-/-Ras cells generated by infecting NF-\u03baB subunit p65+/+ and p65-/- MEFs with pBabe-HRASG12V. Post-injection of the Ras cells into SCID mice, RasT tumors were removed, reconstituted in culture and examined. Results provide insight into role of NF-\u03baB in tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "25263557", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE59545", "order": "none", "update_date": "Jul 31 2015", "subsets": [ { "dataset_id": "GDS5608", "description": "p65+/+Ras", "sample_id": [ "GSM1439179", "GSM1439180" ], "type": "genotype/variation", "id": "GDS5608_1" }, { "dataset_id": "GDS5608", "description": "p65-/-Ras", "sample_id": [ "GSM1439181", "GSM1439182" ], "type": "genotype/variation", "id": "GDS5608_2" }, { "dataset_id": "GDS5608", "description": "Ras (injected into SCID mice)", "sample_id": [ "GSM1439179", "GSM1439181" ], "type": "cell line", "id": "GDS5608_3" }, { "dataset_id": "GDS5608", "description": "RasT (reconstituted from tumors)", "sample_id": [ "GSM1439180", "GSM1439182" ], "type": "cell line", "id": "GDS5608_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5608", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5608.tab", "compression": "gz" } ], [ [ "GDS5609.tab" ], { "title": "Notch ligand delta-like 4 effect on interleukin 10-secreting T helper 1 cells", "description": "Analysis of IL-10-secreting and -nonsecreting T helper 1 (Th1) cells stimulated with Notch ligand Delta-like 4. The Notch pathway is a major driver of IL-10 production in Th1 cells. Results provide insight into the molecular basis of Notch-mediated IL-10 induction in Th1 cells.", "type": "Expression profiling by array", "pubmed_id": "25073792", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE57417", "order": "none", "update_date": "Aug 05 2015", "subsets": [ { "dataset_id": "GDS5609", "description": "IL-10-secreting Th1 cells", "sample_id": [ "GSM1382333", "GSM1382335" ], "type": "cell type", "id": "GDS5609_1" }, { "dataset_id": "GDS5609", "description": "IL-10-non-secreting Th1 cells", "sample_id": [ "GSM1382334", "GSM1382336" ], "type": "cell type", "id": "GDS5609_2" }, { "dataset_id": "GDS5609", "description": "Notch ligand delta-like 4", "sample_id": [ "GSM1382333", "GSM1382334" ], "type": "agent", "id": "GDS5609_3" }, { "dataset_id": "GDS5609", "description": "control", "sample_id": [ "GSM1382336", "GSM1382335" ], "type": "agent", "id": "GDS5609_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5609", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5609.tab", "compression": "gz" } ], [ [ "GDS561.tab" ], { "title": "Osteopontin overexpression", "description": "Investigation into effect of constitutive overexpression of osteopontin (OPN) in breast carcinoma cell line 21NT.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE939", "order": "none", "update_date": "Apr 20 2004", "subsets": [ { "dataset_id": "GDS561", "description": "21NT/OPbi", "sample_id": [ "GSM14833" ], "type": "cell line", "id": "GDS561_1" }, { "dataset_id": "GDS561", "description": "21NTCi", "sample_id": [ "GSM14834" ], "type": "cell line", "id": "GDS561_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS561", "version": 1.0, "instances": "2", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS561.tab", "compression": "gz" } ], [ [ "GDS5610.tab" ], { "title": "Heritable pulmonary arterial hypertension: cardiac right ventricular wall", "description": "Analysis of biopsies of right ventricle (RV) from patients with pulmonary arterial hypertension (PAH) with bone morphogenetic protein receptor type II (BMPR2) mutation. Results provide insight into molecular mechanisms underlying the metabolic effects of mutant BMPR2 in PAH RVs.", "type": "Expression profiling by array", "pubmed_id": "24274756", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE67492", "order": "none", "update_date": "Aug 06 2015", "subsets": [ { "dataset_id": "GDS5610", "description": "idiopathic dilated cardiomyopathy", "sample_id": [ "GSM1648023", "GSM1648024" ], "type": "disease state", "id": "GDS5610_1" }, { "dataset_id": "GDS5610", "description": "pulmonary arterial hypertension with BMPR2 mutation", "sample_id": [ "GSM1648025", "GSM1648026" ], "type": "disease state", "id": "GDS5610_2" }, { "dataset_id": "GDS5610", "description": "healthy control", "sample_id": [ "GSM1648027", "GSM1648028" ], "type": "disease state", "id": "GDS5610_3" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5610", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5610.tab", "compression": "gz" } ], [ [ "GDS5611.tab" ], { "title": "Sirtuin-1 deficiency effect on adult secondary neurospheres", "description": "Analysis of adult secondary neurospheres derived from hippocampal neural stem cells/neural progenitor cells of sirtuin-1 knockout mice. Sirt1 is a nicotinamide adenine dinucleotide (NAD)-dependent histone deacetylase. Results provide insight into the role of Sirt1 in adult hippocampal neurogenesis.", "type": "Expression profiling by array", "pubmed_id": "25468938", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE39551", "order": "none", "update_date": "Aug 12 2015", "subsets": [ { "dataset_id": "GDS5611", "description": "sirtuin-1 knockout", "sample_id": [ "GSM971595", "GSM971593" ], "type": "genotype/variation", "id": "GDS5611_1" }, { "dataset_id": "GDS5611", "description": "wild type", "sample_id": [ "GSM971594", "GSM971592" ], "type": "genotype/variation", "id": "GDS5611_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5611", "version": 1.0, "instances": "4", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5611.tab", "compression": "gz" } ], [ [ "GDS5612.tab" ], { "title": "Sirtuin-1 activator resveratrol effect on adult secondary neurospheres", "description": "Analysis of adult secondary neurospheres derived from hippocampal neural stem cells/neural progenitor cells and treated with resveratrol, an activator of NAD-dependent histone deacetylase Sirtuin-1 (Sirt1). Results provide insight into the role of Sirt1 in adult hippocampal neurogenesis.", "type": "Expression profiling by array", "pubmed_id": "25468938", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE39551", "order": "none", "update_date": "Aug 12 2015", "subsets": [ { "dataset_id": "GDS5612", "description": "resveratrol", "sample_id": [ "GSM971597", "GSM971599" ], "type": "agent", "id": "GDS5612_1" }, { "dataset_id": "GDS5612", "description": "control", "sample_id": [ "GSM971596", "GSM971598" ], "type": "agent", "id": "GDS5612_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5612", "version": 1.0, "instances": "4", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5612.tab", "compression": "gz" } ], [ [ "GDS5613.tab" ], { "title": "All-trans retinoic acid effect on U937 myeloid cells overexpressing ecotropic virus integration site 1", "description": "Analysis of EVI1-overexpressing U937 myeloid cells treated with ATRA. EVI1 overexpression is associated with poor prognosis in myeloid leukemias; ATRA is a myeloid differentiation inducing agent. Results provide insight into the potential interplay between EVI1 and ATRA in myeloid cells.", "type": "Expression profiling by array", "pubmed_id": "25486480", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE66854", "order": "none", "update_date": "Aug 13 2015", "subsets": [ { "dataset_id": "GDS5613", "description": "EVI1 overexpression", "sample_id": [ "GSM1633350", "GSM1633346", "GSM1633342", "GSM1633352", "GSM1633348", "GSM1633344" ], "type": "genotype/variation", "id": "GDS5613_1" }, { "dataset_id": "GDS5613", "description": "control", "sample_id": [ "GSM1633349", "GSM1633345", "GSM1633341", "GSM1633351", "GSM1633347", "GSM1633343" ], "type": "genotype/variation", "id": "GDS5613_2" }, { "dataset_id": "GDS5613", "description": "all-trans retinoic acid", "sample_id": [ "GSM1633343", "GSM1633347", "GSM1633351", "GSM1633344", "GSM1633348", "GSM1633352" ], "type": "agent", "id": "GDS5613_3" }, { "dataset_id": "GDS5613", "description": "control", "sample_id": [ "GSM1633341", "GSM1633345", "GSM1633349", "GSM1633342", "GSM1633346", "GSM1633350" ], "type": "agent", "id": "GDS5613_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5613", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5613.tab", "compression": "gz" } ], [ [ "GDS5614.tab" ], { "title": "All-trans retinoic acid effect on HL60 myeloid cells overexpressing ecotropic virus integration site 1", "description": "Analysis of EVI1-overexpressing HL60 myeloid cells treated with ATRA. EVI1 overexpression is associated with poor prognosis in myeloid leukemias; ATRA is a myeloid differentiation inducing agent. Results provide insight into the potential interplay between EVI1 and ATRA in myeloid cells.", "type": "Expression profiling by array", "pubmed_id": "25486480", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE66837", "order": "none", "update_date": "Aug 13 2015", "subsets": [ { "dataset_id": "GDS5614", "description": "EVI1 overexpression", "sample_id": [ "GSM1633066", "GSM1633070", "GSM1633074", "GSM1633064", "GSM1633068", "GSM1633072" ], "type": "genotype/variation", "id": "GDS5614_1" }, { "dataset_id": "GDS5614", "description": "control", "sample_id": [ "GSM1633065", "GSM1633069", "GSM1633073", "GSM1633063", "GSM1633067", "GSM1633071" ], "type": "genotype/variation", "id": "GDS5614_2" }, { "dataset_id": "GDS5614", "description": "all-trans retinoic acid", "sample_id": [ "GSM1633066", "GSM1633070", "GSM1633074", "GSM1633065", "GSM1633069", "GSM1633073" ], "type": "agent", "id": "GDS5614_3" }, { "dataset_id": "GDS5614", "description": "control", "sample_id": [ "GSM1633064", "GSM1633068", "GSM1633072", "GSM1633063", "GSM1633067", "GSM1633071" ], "type": "agent", "id": "GDS5614_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5614", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5614.tab", "compression": "gz" } ], [ [ "GDS5615.tab" ], { "title": "Oral histone deacetylase inhibitor ST7612AA1 effect on diffuse large B-cell lymphoma in vitro models", "description": "Analysis of lymphoma cell lines DOHH2 (derived from GCB-DLBCL) and TMD8 (derived from ABC-DLBCL) exposed to ST7612AA1 (300nM) for 8 hrs. ST7612AA1 is an oral thiol-based histone deacetylase inhibitor (HDACi). Results provide insight into the molecular mechanisms underlying ST7612AA1 action in DLBCL.", "type": "Expression profiling by array", "pubmed_id": "25671299", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE62460", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5615", "description": "TMD8", "sample_id": [ "GSM1527304", "GSM1527305", "GSM1527306", "GSM1527307", "GSM1527308", "GSM1527309" ], "type": "cell line", "id": "GDS5615_1" }, { "dataset_id": "GDS5615", "description": "DOHH2", "sample_id": [ "GSM1527310", "GSM1527311", "GSM1527312", "GSM1527313", "GSM1527314", "GSM1527315" ], "type": "cell line", "id": "GDS5615_2" }, { "dataset_id": "GDS5615", "description": "ST7612AA1", "sample_id": [ "GSM1527307", "GSM1527308", "GSM1527309", "GSM1527313", "GSM1527314", "GSM1527315" ], "type": "agent", "id": "GDS5615_3" }, { "dataset_id": "GDS5615", "description": "control", "sample_id": [ "GSM1527304", "GSM1527305", "GSM1527306", "GSM1527310", "GSM1527311", "GSM1527312" ], "type": "agent", "id": "GDS5615_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5615", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5615.tab", "compression": "gz" } ], [ [ "GDS5618.tab" ], { "title": "Pregnancy effect on transplanted male pancreatic islets", "description": "Analysis of male donor islets transplanted into streptozotocin-induced diabetic females then removed at pregnancy day 12.5. During pregnancy, the mother\u2019s insulin demand increases to sustain fetal growth. Results provide insight into the molecular response of male beta cells during pregnancy.", "type": "Expression profiling by array", "pubmed_id": "25816302", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE59143", "order": "none", "update_date": "Aug 26 2015", "subsets": [ { "dataset_id": "GDS5618", "description": "female", "sample_id": [ "GSM1429382", "GSM1429383", "GSM1429384", "GSM1429385", "GSM1429386", "GSM1429387", "GSM1429388", "GSM1429389", "GSM1429390", "GSM1429391", "GSM1429392", "GSM1429396", "GSM1429397", "GSM1429398" ], "type": "gender", "id": "GDS5618_1" }, { "dataset_id": "GDS5618", "description": "male", "sample_id": [ "GSM1429393", "GSM1429394", "GSM1429395", "GSM1429399", "GSM1429400", "GSM1429401" ], "type": "gender", "id": "GDS5618_2" }, { "dataset_id": "GDS5618", "description": "islet", "sample_id": [ "GSM1429382", "GSM1429383", "GSM1429384", "GSM1429385", "GSM1429386", "GSM1429387", "GSM1429388", "GSM1429389" ], "type": "tissue", "id": "GDS5618_3" }, { "dataset_id": "GDS5618", "description": "islet graft", "sample_id": [ "GSM1429393", "GSM1429394", "GSM1429395", "GSM1429399", "GSM1429400", "GSM1429401", "GSM1429390", "GSM1429391", "GSM1429392", "GSM1429396", "GSM1429397", "GSM1429398" ], "type": "tissue", "id": "GDS5618_4" }, { "dataset_id": "GDS5618", "description": "non-transplanted, from pregnant females", "sample_id": [ "GSM1429382", "GSM1429383", "GSM1429384", "GSM1429385" ], "type": "protocol", "id": "GDS5618_5" }, { "dataset_id": "GDS5618", "description": "non-transplanted, from non-pregnant females", "sample_id": [ "GSM1429386", "GSM1429387", "GSM1429388", "GSM1429389" ], "type": "protocol", "id": "GDS5618_6" }, { "dataset_id": "GDS5618", "description": "transplanted into pregnant females", "sample_id": [ "GSM1429390", "GSM1429391", "GSM1429392", "GSM1429393", "GSM1429394", "GSM1429395" ], "type": "protocol", "id": "GDS5618_7" }, { "dataset_id": "GDS5618", "description": "transplanted into non-pregnant females", "sample_id": [ "GSM1429396", "GSM1429397", "GSM1429398", "GSM1429399", "GSM1429400", "GSM1429401" ], "type": "protocol", "id": "GDS5618_8" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5618", "version": 1.0, "instances": "20", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5618.tab", "compression": "gz" } ], [ [ "GDS5619.tab" ], { "title": "H3K79 histone methyl transferase DOT1L inhibitor EPZ004777 effect on breast cancer cells: dose response", "description": "Analysis of MDA-MB-231 breast cancer cells treated with DOT1L (disruptor of telomeric silencing 1 like) inhibitor EPZ004777 or DOT1L siRNA. DOT1L is a histone H3-lysine79 (H3K79) methyltransferase. Results provide insight into the role of DOT1L/H3K79 methylation in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "25359765", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE56630", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5619", "description": "DMSO", "sample_id": [ "GSM1366023", "GSM1366024" ], "type": "agent", "id": "GDS5619_1" }, { "dataset_id": "GDS5619", "description": "DOT1L inhibitor [1] EPZ004777", "sample_id": [ "GSM1366031", "GSM1366032", "GSM1366029", "GSM1366030" ], "type": "agent", "id": "GDS5619_2" }, { "dataset_id": "GDS5619", "description": "DOT1L siRNA", "sample_id": [ "GSM1366033", "GSM1366034" ], "type": "agent", "id": "GDS5619_3" }, { "dataset_id": "GDS5619", "description": "control", "sample_id": [ "GSM1366023", "GSM1366024" ], "type": "dose", "id": "GDS5619_4" }, { "dataset_id": "GDS5619", "description": "1uM", "sample_id": [ "GSM1366029", "GSM1366030" ], "type": "dose", "id": "GDS5619_5" }, { "dataset_id": "GDS5619", "description": "5uM", "sample_id": [ "GSM1366031", "GSM1366032" ], "type": "dose", "id": "GDS5619_6" }, { "dataset_id": "GDS5619", "description": "n/a", "sample_id": [ "GSM1366033", "GSM1366034" ], "type": "dose", "id": "GDS5619_7" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5619", "version": 1.0, "instances": "8", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5619.tab", "compression": "gz" } ], [ [ "GDS562.tab" ], { "title": "Bone cell tissue culture on amino acid conjugated surfaces", "description": "Evaluation of osteosarcoma TE85 cell tissue culture on a variety of amino acid conjugated surfaces at 6 and 32 hours. Study holds potential applications for bone tissue engineering.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1000", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS562", "description": "aspartic acid", "sample_id": [ "GSM15785", "GSM15790" ], "type": "growth protocol", "id": "GDS562_1" }, { "dataset_id": "GDS562", "description": "glutamic acid", "sample_id": [ "GSM15787", "GSM15791" ], "type": "growth protocol", "id": "GDS562_2" }, { "dataset_id": "GDS562", "description": "serine", "sample_id": [ "GSM15788", "GSM15792" ], "type": "growth protocol", "id": "GDS562_3" }, { "dataset_id": "GDS562", "description": "polystyrene", "sample_id": [ "GSM15786", "GSM15795" ], "type": "growth protocol", "id": "GDS562_4" }, { "dataset_id": "GDS562", "description": "amino terminated", "sample_id": [ "GSM15789", "GSM15794" ], "type": "growth protocol", "id": "GDS562_5" }, { "dataset_id": "GDS562", "description": "6 h", "sample_id": [ "GSM15785", "GSM15795", "GSM15787", "GSM15788", "GSM15789" ], "type": "time", "id": "GDS562_6" }, { "dataset_id": "GDS562", "description": "32 h", "sample_id": [ "GSM15790", "GSM15786", "GSM15791", "GSM15792", "GSM15794" ], "type": "time", "id": "GDS562_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS562", "version": 1.0, "instances": "10", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS562.tab", "compression": "gz" } ], [ [ "GDS5620.tab" ], { "title": "H3K79 histone methyl transferase DOT1L inhibitor Compound 55 effect on breast cancer cells: dose response", "description": "Analysis of MDA-MB-231 breast cancer cells treated with DOT1L (disruptor of telomeric silencing 1 like) inhibitor Compound 55 or DOT1L siRNA. DOT1L is a histone H3-lysine79 (H3K79) methyltransferase. Results provide insight into the role of DOT1L/H3K79 methylation in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "25359765", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE56630", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5620", "description": "DMSO", "sample_id": [ "GSM1366023", "GSM1366024" ], "type": "agent", "id": "GDS5620_1" }, { "dataset_id": "GDS5620", "description": "DOT1L inhibitor [2] Compound 55", "sample_id": [ "GSM1366025", "GSM1366026", "GSM1366027", "GSM1366028" ], "type": "agent", "id": "GDS5620_2" }, { "dataset_id": "GDS5620", "description": "DOT1L siRNA", "sample_id": [ "GSM1366033", "GSM1366034" ], "type": "agent", "id": "GDS5620_3" }, { "dataset_id": "GDS5620", "description": "control", "sample_id": [ "GSM1366023", "GSM1366024" ], "type": "dose", "id": "GDS5620_4" }, { "dataset_id": "GDS5620", "description": "2uM", "sample_id": [ "GSM1366025", "GSM1366026" ], "type": "dose", "id": "GDS5620_5" }, { "dataset_id": "GDS5620", "description": "10uM", "sample_id": [ "GSM1366027", "GSM1366028" ], "type": "dose", "id": "GDS5620_6" }, { "dataset_id": "GDS5620", "description": "n/a", "sample_id": [ "GSM1366033", "GSM1366034" ], "type": "dose", "id": "GDS5620_7" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5620", "version": 1.0, "instances": "8", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5620.tab", "compression": "gz" } ], [ [ "GDS5621.tab" ], { "title": "Estradiol effect on MCF7 breast cancer cells expressing progesterone receptor-B", "description": "Analysis of estradiol-treated, progesterone receptor (PR)-low/estrogen receptor (ER)+ MCF7 breast cancer cells stably-expressing PR-B. Progesterone and estrogen are major drivers of breast cancer. Results provide insight into the molecular cross-talk between ER and PR-B in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "24469035", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE45643", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5621", "description": "PRB vector", "sample_id": [ "GSM1111219", "GSM1111220", "GSM1111221", "GSM1111222", "GSM1111223", "GSM1111224" ], "type": "genotype/variation", "id": "GDS5621_1" }, { "dataset_id": "GDS5621", "description": "empty vector", "sample_id": [ "GSM1111213", "GSM1111214", "GSM1111215", "GSM1111216", "GSM1111217", "GSM1111218" ], "type": "genotype/variation", "id": "GDS5621_2" }, { "dataset_id": "GDS5621", "description": "estradiol", "sample_id": [ "GSM1111216", "GSM1111217", "GSM1111218", "GSM1111222", "GSM1111223", "GSM1111224" ], "type": "agent", "id": "GDS5621_3" }, { "dataset_id": "GDS5621", "description": "control", "sample_id": [ "GSM1111213", "GSM1111214", "GSM1111215", "GSM1111219", "GSM1111220", "GSM1111221" ], "type": "agent", "id": "GDS5621_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5621", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5621.tab", "compression": "gz" } ], [ [ "GDS5622.tab" ], { "title": "Myelodysplastic syndrome disorder: bone marrow mesenchymal stromal cells", "description": "Analysis of bone marrow (BM) mesenchymal stromal cells from adult patients representing MDS subtypes RCMD (refractory cytopenia with multilineage dysplasia) and RAEB (refractory anemia with excess blasts). Results provide insight into molecular changes in the BM microenvironment contributing to MDS.", "type": "Expression profiling by array", "pubmed_id": "25803272", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE61853", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5622", "description": "control", "sample_id": [ "GSM1515746", "GSM1515747", "GSM1515748", "GSM1515749", "GSM1515750", "GSM1515751", "GSM1515752" ], "type": "disease state", "id": "GDS5622_1" }, { "dataset_id": "GDS5622", "description": "MDS refractory cytopenia with multilineage dysplasia", "sample_id": [ "GSM1515753", "GSM1515754", "GSM1515755" ], "type": "disease state", "id": "GDS5622_2" }, { "dataset_id": "GDS5622", "description": "MDS refractory anemia with excess blasts-1", "sample_id": [ "GSM1515756", "GSM1515757", "GSM1515758" ], "type": "disease state", "id": "GDS5622_3" }, { "dataset_id": "GDS5622", "description": "MDS refractory anemia with excess blasts-2", "sample_id": [ "GSM1515759" ], "type": "disease state", "id": "GDS5622_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5622", "version": 1.0, "instances": "14", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5622.tab", "compression": "gz" } ], [ [ "GDS5623.tab" ], { "title": "Interferon-gamma effect on lipopolysaccharide-activated bone marrow-derived macrophages", "description": "Analysis of BMDMs primed with IFN\u03b3 and subsequently activated with LPS. Pro-inflammatory macrophages are induced by the Th1 cytokine IFN\u03b3 and/or the toll-like receptor ligand LPS. Results provide insight into the molecular effects of IFN\u03b3 priming on LPS-induced inflammation in macrophages.", "type": "Expression profiling by array", "pubmed_id": "25750432", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE60290", "order": "none", "update_date": "Nov 02 2015", "subsets": [ { "dataset_id": "GDS5623", "description": "interferon-gamma primed", "sample_id": [ "GSM1470334", "GSM1470335", "GSM1470336", "GSM1470342", "GSM1470343", "GSM1470344" ], "type": "protocol", "id": "GDS5623_1" }, { "dataset_id": "GDS5623", "description": "interferon-beta primed", "sample_id": [ "GSM1470345", "GSM1470346", "GSM1470337", "GSM1470338" ], "type": "protocol", "id": "GDS5623_2" }, { "dataset_id": "GDS5623", "description": "unprimed", "sample_id": [ "GSM1470332", "GSM1470333", "GSM1470339", "GSM1470340", "GSM1470341" ], "type": "protocol", "id": "GDS5623_3" }, { "dataset_id": "GDS5623", "description": "LPS", "sample_id": [ "GSM1470332", "GSM1470333", "GSM1470334", "GSM1470335", "GSM1470336", "GSM1470337", "GSM1470338" ], "type": "agent", "id": "GDS5623_4" }, { "dataset_id": "GDS5623", "description": "control", "sample_id": [ "GSM1470339", "GSM1470340", "GSM1470341", "GSM1470342", "GSM1470343", "GSM1470344", "GSM1470345", "GSM1470346" ], "type": "agent", "id": "GDS5623_5" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5623", "version": 1.0, "instances": "15", "variables": 18036, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5623.tab", "compression": "gz" } ], [ [ "GDS5624.tab" ], { "title": "Epigenetic modifying reagents effect on a progressive hearing loss model: whole cochlea", "description": "Analysis of cochlea from 4 wk old DBA/2J males (a model of progressive hearing loss) injected for 8 wks with a combination of epigenetic modifiers l-methionine and valproic acid. Results provide insight into the effect of epigenetic modifications on the molecular mechanisms underlying hearing loss.", "type": "Expression profiling by array", "pubmed_id": [ "25875282", "26484279" ], "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "transformed count", "reference_series": "GSE62173", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5624", "description": "untreated", "sample_id": [ "GSM1520965", "GSM1520966", "GSM1520967", "GSM1520968", "GSM1520969" ], "type": "protocol", "id": "GDS5624_1" }, { "dataset_id": "GDS5624", "description": "vehicle", "sample_id": [ "GSM1520970", "GSM1520971", "GSM1520972", "GSM1520973", "GSM1520974" ], "type": "protocol", "id": "GDS5624_2" }, { "dataset_id": "GDS5624", "description": "L-methionine and valproic acid", "sample_id": [ "GSM1520975", "GSM1520976", "GSM1520977", "GSM1520978", "GSM1520979", "GSM1520980" ], "type": "protocol", "id": "GDS5624_3" }, { "dataset_id": "GDS5624", "description": "4 weeks", "sample_id": [ "GSM1520965", "GSM1520966", "GSM1520967", "GSM1520968", "GSM1520969" ], "type": "age", "id": "GDS5624_4" }, { "dataset_id": "GDS5624", "description": "12 weeks", "sample_id": [ "GSM1520970", "GSM1520971", "GSM1520972", "GSM1520973", "GSM1520974", "GSM1520975", "GSM1520976", "GSM1520977", "GSM1520978", "GSM1520979", "GSM1520980" ], "type": "age", "id": "GDS5624_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5624", "version": 1.0, "instances": "16", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5624.tab", "compression": "gz" } ], [ [ "GDS5625.tab" ], { "title": "DNA methyltransferase inhibitor 5-aza-2\u2019-deoxycytidine effect on oral cancer cell lines", "description": "Analysis of oral squamous cell carcinoma (OSCC) cell lines: OC3, SAS, SCC-15, and HSC3, treated with 5-aza-2\u2019-deoxycytidine (AzC), an inhibitor of DNA methyltransferase. Results provide insight into potential tumor suppressor genes silenced by DNA hypermethylation in OSCC.", "type": "Expression profiling by array", "pubmed_id": "23362108", "platform": "GPL6883", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "24526", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE38823", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5625", "description": "OC3", "sample_id": [ "GSM950305", "GSM950306", "GSM950307", "GSM950308" ], "type": "cell line", "id": "GDS5625_1" }, { "dataset_id": "GDS5625", "description": "SAS", "sample_id": [ "GSM950309", "GSM950310", "GSM950311", "GSM950312" ], "type": "cell line", "id": "GDS5625_2" }, { "dataset_id": "GDS5625", "description": "SCC-15", "sample_id": [ "GSM950313", "GSM950314", "GSM950315", "GSM950316" ], "type": "cell line", "id": "GDS5625_3" }, { "dataset_id": "GDS5625", "description": "HSC3", "sample_id": [ "GSM950317", "GSM950318", "GSM950319", "GSM950320" ], "type": "cell line", "id": "GDS5625_4" }, { "dataset_id": "GDS5625", "description": "5-aza-2\u2019-deoxycytidine", "sample_id": [ "GSM950307", "GSM950308", "GSM950311", "GSM950312", "GSM950315", "GSM950316", "GSM950319", "GSM950320" ], "type": "agent", "id": "GDS5625_5" }, { "dataset_id": "GDS5625", "description": "control", "sample_id": [ "GSM950309", "GSM950310", "GSM950313", "GSM950314", "GSM950317", "GSM950318", "GSM950305", "GSM950306" ], "type": "agent", "id": "GDS5625_6" } ], "taxid": "9606", "genes": 19335, "aggregation_function": "mean", "name": "GDS5625", "version": 1.0, "instances": "16", "variables": 19338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5625.tab", "compression": "gz" } ], [ [ "GDS5626.tab" ], { "title": "pH1N1 influenza virus infection of interferon regulatory factor 7-deficient peripheral blood mononuclear cells: time course", "description": "Analysis of PBMCs isolated from an IRF7-deficient patient and infected with influenza A/CA/4/2009 for up to 16 hrs. Transcription factor IRF7 amplifies type I and III interferon response to viruses. Results provide insight into the role of IRF7 in antiviral immunity.", "type": "Expression profiling by array", "pubmed_id": "25814066", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE66486", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5626", "description": "healthy donor 1", "sample_id": [ "GSM1623215", "GSM1623214", "GSM1623213" ], "type": "individual", "id": "GDS5626_1" }, { "dataset_id": "GDS5626", "description": "healthy donor 2", "sample_id": [ "GSM1623218", "GSM1623217", "GSM1623216" ], "type": "individual", "id": "GDS5626_2" }, { "dataset_id": "GDS5626", "description": "healthy donor 3", "sample_id": [ "GSM1623221", "GSM1623220", "GSM1623219" ], "type": "individual", "id": "GDS5626_3" }, { "dataset_id": "GDS5626", "description": "healthy donor 4", "sample_id": [ "GSM1623224", "GSM1623223", "GSM1623222" ], "type": "individual", "id": "GDS5626_4" }, { "dataset_id": "GDS5626", "description": "IRF7-deficient patient", "sample_id": [ "GSM1623228", "GSM1623229", "GSM1623230" ], "type": "individual", "id": "GDS5626_5" }, { "dataset_id": "GDS5626", "description": "UNC93B-deficient patient", "sample_id": [ "GSM1623227", "GSM1623226", "GSM1623225" ], "type": "individual", "id": "GDS5626_6" }, { "dataset_id": "GDS5626", "description": "uninfected", "sample_id": [ "GSM1623222", "GSM1623219", "GSM1623216", "GSM1623213", "GSM1623225", "GSM1623228" ], "type": "infection", "id": "GDS5626_7" }, { "dataset_id": "GDS5626", "description": "influenza virus A/CA/4/2009", "sample_id": [ "GSM1623223", "GSM1623220", "GSM1623217", "GSM1623214", "GSM1623224", "GSM1623221", "GSM1623218", "GSM1623215", "GSM1623226", "GSM1623227", "GSM1623229", "GSM1623230" ], "type": "infection", "id": "GDS5626_8" }, { "dataset_id": "GDS5626", "description": "control", "sample_id": [ "GSM1623222", "GSM1623219", "GSM1623216", "GSM1623213", "GSM1623225", "GSM1623228" ], "type": "time", "id": "GDS5626_9" }, { "dataset_id": "GDS5626", "description": "8 hours", "sample_id": [ "GSM1623223", "GSM1623220", "GSM1623217", "GSM1623214", "GSM1623226", "GSM1623229" ], "type": "time", "id": "GDS5626_10" }, { "dataset_id": "GDS5626", "description": "16 hours", "sample_id": [ "GSM1623224", "GSM1623221", "GSM1623218", "GSM1623215", "GSM1623227", "GSM1623230" ], "type": "time", "id": "GDS5626_11" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5626", "version": 1.0, "instances": "18", "variables": 37610, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5626.tab", "compression": "gz" } ], [ [ "GDS5627.tab" ], { "title": "Dasatinib-resistant and dasatinib-sensitive pancreatic cancer cell lines", "description": "Analysis of dasatinib-resistant and dasatinib-sensitive PC cell lines. Dasatinib, a small-molecule kinase inhibitor, is FDA-approved for PC, but certain PC cells can have intrinsic or acquired resistance to dasatinib. Results provide insight into molecular basis of dasatinib-resistance in PC cells.", "type": "Expression profiling by array", "pubmed_id": "25637283", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE59357", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5627", "description": "Panc0403", "sample_id": [ "GSM1435684", "GSM1435685", "GSM1435686" ], "type": "cell line", "id": "GDS5627_1" }, { "dataset_id": "GDS5627", "description": "Panc0504", "sample_id": [ "GSM1435687", "GSM1435688", "GSM1435689" ], "type": "cell line", "id": "GDS5627_2" }, { "dataset_id": "GDS5627", "description": "Panc1005", "sample_id": [ "GSM1435690", "GSM1435691", "GSM1435692" ], "type": "cell line", "id": "GDS5627_3" }, { "dataset_id": "GDS5627", "description": "SU8686", "sample_id": [ "GSM1435693", "GSM1435694", "GSM1435695" ], "type": "cell line", "id": "GDS5627_4" }, { "dataset_id": "GDS5627", "description": "MiaPaCa2", "sample_id": [ "GSM1435696", "GSM1435697", "GSM1435698" ], "type": "cell line", "id": "GDS5627_5" }, { "dataset_id": "GDS5627", "description": "Panc1", "sample_id": [ "GSM1435699", "GSM1435700", "GSM1435701" ], "type": "cell line", "id": "GDS5627_6" }, { "dataset_id": "GDS5627", "description": "dasatinib-resistant pancreatic cancer cells", "sample_id": [ "GSM1435693", "GSM1435694", "GSM1435695", "GSM1435696", "GSM1435697", "GSM1435698", "GSM1435699", "GSM1435700", "GSM1435701" ], "type": "cell type", "id": "GDS5627_7" }, { "dataset_id": "GDS5627", "description": "dasatinib-sensitive pancreatic cancer cells", "sample_id": [ "GSM1435684", "GSM1435685", "GSM1435686", "GSM1435687", "GSM1435688", "GSM1435689", "GSM1435690", "GSM1435691", "GSM1435692" ], "type": "cell type", "id": "GDS5627_8" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5627", "version": 1.0, "instances": "18", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5627.tab", "compression": "gz" } ], [ [ "GDS5628.tab" ], { "title": "Circadian nuclear receptor REV-ERB\u03b1 deficiency effect on ventral midbrain", "description": "Analysis of ventral midbrain (VMB) from Rev-erb\u03b1 knock-outs that were entrained under a 12hr light-dark photoperiod for >10 days, kept in darkness for 2 days, and sacrificed on the third day. REV-ERB\u03b1 is associated with bipolar disorder. Results provide insight into the role of REV-ERB\u03b1 in VMB.", "type": "Expression profiling by array", "pubmed_id": "24813609", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE55119", "order": "none", "update_date": "Aug 21 2015", "subsets": [ { "dataset_id": "GDS5628", "description": "wild type", "sample_id": [ "GSM1329811", "GSM1329812" ], "type": "genotype/variation", "id": "GDS5628_1" }, { "dataset_id": "GDS5628", "description": "Rev-erb\u03b1 knockout", "sample_id": [ "GSM1329813", "GSM1329814" ], "type": "genotype/variation", "id": "GDS5628_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5628", "version": 1.0, "instances": "4", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5628.tab", "compression": "gz" } ], [ [ "GDS5629.tab" ], { "title": "Citrobacter rodentium infection of interleukin-10 deficient colon", "description": "Analysis of whole colon tissue two weeks after C. rodentium infection of IL-10-deficient C57BL/6 females. C. rodentium is a mucosal pathogen that colonizes the colon causing transient mucosal inflammation. Results provide insight into the role of IL-10 in the colonic response to infection.", "type": "Expression profiling by array", "pubmed_id": "24566625", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE55812", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5629", "description": "interleukin-10 deficient", "sample_id": [ "GSM1346308", "GSM1346309" ], "type": "genotype/variation", "id": "GDS5629_1" }, { "dataset_id": "GDS5629", "description": "wild type", "sample_id": [ "GSM1346306", "GSM1346307" ], "type": "genotype/variation", "id": "GDS5629_2" }, { "dataset_id": "GDS5629", "description": "Citrobacter rodentium", "sample_id": [ "GSM1346307", "GSM1346309" ], "type": "infection", "id": "GDS5629_3" }, { "dataset_id": "GDS5629", "description": "uninfected", "sample_id": [ "GSM1346306", "GSM1346308" ], "type": "infection", "id": "GDS5629_4" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5629", "version": 1.0, "instances": "4", "variables": 27550, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5629.tab", "compression": "gz" } ], [ [ "GDS563.tab" ], { "title": "Duchenne muscular dystrophy (II) (HG-U95A)", "description": "Search for modifying factors and pathogenic pathways involved in Duchenne muscular dystrophy (DMD). Quadricep skeletal muscle biopsies from 12 DMD patients and 11 unaffected control patients examined.", "type": "Expression profiling by array", "pubmed_id": "12415109", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE1004", "order": "none", "update_date": "Mar 16 2010", "subsets": [ { "dataset_id": "GDS563", "description": "normal", "sample_id": [ "GSM15807", "GSM15822", "GSM15823", "GSM15824", "GSM15825", "GSM15826", "GSM15827", "GSM15828", "GSM15829", "GSM15830", "GSM15831" ], "type": "disease state", "id": "GDS563_1" }, { "dataset_id": "GDS563", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM15833", "GSM15834", "GSM15835", "GSM15836", "GSM15837", "GSM15838", "GSM15839", "GSM15840", "GSM15841", "GSM15842", "GSM15843", "GSM15844" ], "type": "disease state", "id": "GDS563_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS563", "version": 1.0, "instances": "23", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS563.tab", "compression": "gz" } ], [ [ "GDS5630.tab" ], { "title": "Hydrogen peroxide effect on superoxide dismutase 1-deficient yeast cells", "description": "Analysis of superoxide dismutase 1 deficient cells treated with reactive oxygen species hydrogen peroxide (H2O2) for 20 minutes. Sod1 deletion in yeast is known to cause extensive oxidative damage. Results provide insight into the molecular basis of Sod1\u2019s role in oxidative stress resistance.", "type": "Expression profiling by array", "pubmed_id": "24647101", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55081", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5630", "description": "sod1\u0394", "sample_id": [ "GSM1329157", "GSM1329158" ], "type": "genotype/variation", "id": "GDS5630_1" }, { "dataset_id": "GDS5630", "description": "wild type", "sample_id": [ "GSM1329159", "GSM1329160" ], "type": "genotype/variation", "id": "GDS5630_2" }, { "dataset_id": "GDS5630", "description": "hydrogen peroxide", "sample_id": [ "GSM1329158", "GSM1329160" ], "type": "agent", "id": "GDS5630_3" }, { "dataset_id": "GDS5630", "description": "none", "sample_id": [ "GSM1329157", "GSM1329159" ], "type": "agent", "id": "GDS5630_4" } ], "taxid": "4932", "genes": 10623, "aggregation_function": "mean", "name": "GDS5630", "version": 1.0, "instances": "4", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5630.tab", "compression": "gz" } ], [ [ "GDS5631.tab" ], { "title": "Lipopolysaccharide effect on scavenger receptor MARCO deficient-dendritic cells", "description": "Analysis of spleen dendritic cells (DCs) isolated from macrophage receptor with collagenous structure (MARCO)-knockout animals and cultured in media containing TLR agonist LPS. MARCO is part of the innate antimicrobial immune system. Results provide insight into the role of MARCO in activated DCs.", "type": "Expression profiling by array", "pubmed_id": "25089703", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE55068", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5631", "description": "wild type", "sample_id": [ "GSM1329050", "GSM1329051" ], "type": "genotype/variation", "id": "GDS5631_1" }, { "dataset_id": "GDS5631", "description": "MARCO knock out", "sample_id": [ "GSM1329052", "GSM1329053" ], "type": "genotype/variation", "id": "GDS5631_2" }, { "dataset_id": "GDS5631", "description": "LPS-activated", "sample_id": [ "GSM1329051", "GSM1329053" ], "type": "protocol", "id": "GDS5631_3" }, { "dataset_id": "GDS5631", "description": "control", "sample_id": [ "GSM1329052", "GSM1329050" ], "type": "protocol", "id": "GDS5631_4" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5631", "version": 1.0, "instances": "4", "variables": 31813, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5631.tab", "compression": "gz" } ], [ [ "GDS5632.tab" ], { "title": "In vitro myoblast differentiation: time course", "description": "Analysis of myoblasts isolated from a 7 year-old male and cultured in low-serum medium to stimulate myogenic differentiation for up 15 days. Results provide insight into the molecular mechanisms underlying myogenic differentiation.", "type": "Expression profiling by array", "pubmed_id": "25190712", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE55034", "order": "ordered", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5632", "description": "before myogenic stimuli", "sample_id": [ "GSM1328177" ], "type": "protocol", "id": "GDS5632_1" }, { "dataset_id": "GDS5632", "description": "myogenic stimuli", "sample_id": [ "GSM1328178", "GSM1328179", "GSM1328180" ], "type": "protocol", "id": "GDS5632_2" }, { "dataset_id": "GDS5632", "description": "control", "sample_id": [ "GSM1328177" ], "type": "time", "id": "GDS5632_3" }, { "dataset_id": "GDS5632", "description": "day 3", "sample_id": [ "GSM1328178" ], "type": "time", "id": "GDS5632_4" }, { "dataset_id": "GDS5632", "description": "day 8", "sample_id": [ "GSM1328179" ], "type": "time", "id": "GDS5632_5" }, { "dataset_id": "GDS5632", "description": "day 15", "sample_id": [ "GSM1328180" ], "type": "time", "id": "GDS5632_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5632", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5632.tab", "compression": "gz" } ], [ [ "GDS5633.tab" ], { "title": "Peroxisome proliferator-activated receptor \u03b2/\u03b4 agonist and hypoxia effects on umbilical vein endothelial cells", "description": "Analysis of HUVECs stimulated with two important angiogenic stimuli: peroxisome proliferator-activated receptor (PPAR) \u03b2/\u03b4 agonist and hypoxia. Results provide insight into possible synergistic molecular interactions between the PPAR \u03b2/\u03b4 and hypoxia-inducible factor (HIF) 1 signaling pathways.", "type": "Expression profiling by array", "pubmed_id": "24721177", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "transformed count", "reference_series": "GSE50378", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5633", "description": "PPAR\u03b2/\u03b4 agonist", "sample_id": [ "GSM1217733", "GSM1217734" ], "type": "agent", "id": "GDS5633_1" }, { "dataset_id": "GDS5633", "description": "control", "sample_id": [ "GSM1217731", "GSM1217732" ], "type": "agent", "id": "GDS5633_2" }, { "dataset_id": "GDS5633", "description": "hypoxia", "sample_id": [ "GSM1217731", "GSM1217733" ], "type": "stress", "id": "GDS5633_3" }, { "dataset_id": "GDS5633", "description": "control", "sample_id": [ "GSM1217732", "GSM1217734" ], "type": "stress", "id": "GDS5633_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5633", "version": 1.0, "instances": "4", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5633.tab", "compression": "gz" } ], [ [ "GDS5634.tab" ], { "title": "High multiplicity mycobacterial infections of macrophages in vitro", "description": "Analysis of macrophage cell line J774A.1 infected with pathogenic mycobacteria BCG and H37Ra and non-pathogenic M. smegmatis under high multiplicity of infection (MOI = 50). Results provide insight into the molecular response of macrophage host cells to pathogenic and non-pathogenic mycobacteria.", "type": "Expression profiling by array", "pubmed_id": "23824656", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE45675", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5634", "description": "Mycobacterium bovis BCG", "sample_id": [ "GSM1111751" ], "type": "infection", "id": "GDS5634_1" }, { "dataset_id": "GDS5634", "description": "Mycobacterium tuberculosis H37ra", "sample_id": [ "GSM1111752" ], "type": "infection", "id": "GDS5634_2" }, { "dataset_id": "GDS5634", "description": "Mycobacterium smegmatis", "sample_id": [ "GSM1111753" ], "type": "infection", "id": "GDS5634_3" }, { "dataset_id": "GDS5634", "description": "control", "sample_id": [ "GSM1111750" ], "type": "infection", "id": "GDS5634_4" }, { "dataset_id": "GDS5634", "description": "pathogenic", "sample_id": [ "GSM1111751" ], "type": "species", "id": "GDS5634_5" }, { "dataset_id": "GDS5634", "description": "pathogenic", "sample_id": [ "GSM1111752" ], "type": "species", "id": "GDS5634_6" }, { "dataset_id": "GDS5634", "description": "non-pathogenic", "sample_id": [ "GSM1111753" ], "type": "species", "id": "GDS5634_7" }, { "dataset_id": "GDS5634", "description": "n/a", "sample_id": [ "GSM1111750" ], "type": "species", "id": "GDS5634_8" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5634", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5634.tab", "compression": "gz" } ], [ [ "GDS5635.tab" ], { "title": "Chlamydia Type III secretion effector TepP-deficient mutant infection of endocervical epithelial cells in vitro", "description": "Analysis of A2EN endocervical epithelial cells infected with a Chlamydia trachomatis mutant strain lacking type III secretion effector TepP (Ct875) or its complemented counterpart for 4hr. Results provide insight into the impact of effector protein TepP on the host cell molecular response.", "type": "Expression profiling by array", "pubmed_id": "24586162", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE54336", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5635", "description": "Chlamydia G1TEPP (complemented strain)", "sample_id": [ "GSM1313408", "GSM1313409" ], "type": "infection", "id": "GDS5635_1" }, { "dataset_id": "GDS5635", "description": "Chlamydia G1V mutant", "sample_id": [ "GSM1313410", "GSM1313411" ], "type": "infection", "id": "GDS5635_2" }, { "dataset_id": "GDS5635", "description": "mock", "sample_id": [ "GSM1313412", "GSM1313413" ], "type": "infection", "id": "GDS5635_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5635", "version": 1.0, "instances": "6", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5635.tab", "compression": "gz" } ], [ [ "GDS5636.tab" ], { "title": "Basic helix-loop-helix transcription factor Bhlhe40-deficient differentiated T helper cell subsets in vitro", "description": "Analysis of naive CD4+ T cells purified from the spleen of bHLH transcription factor Bhlhe40 knockouts, cultured in TH1, TH2 or TH17 conditions for 4 days, and stimulated with PMA and ionomycin for 4\u2009hrs. Results provide insight into the role of Bhlhe40 in the polarized TH cell lineages.", "type": "Expression profiling by array", "pubmed_id": "24699451", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE49166", "order": "none", "update_date": "Oct 01 2015", "subsets": [ { "dataset_id": "GDS5636", "description": "Bhlhe40 knockout", "sample_id": [ "GSM1194892", "GSM1194894", "GSM1194893" ], "type": "genotype/variation", "id": "GDS5636_1" }, { "dataset_id": "GDS5636", "description": "wild type", "sample_id": [ "GSM1194888", "GSM1194890", "GSM1194889" ], "type": "genotype/variation", "id": "GDS5636_2" }, { "dataset_id": "GDS5636", "description": "TH1 conditions for 4 days", "sample_id": [ "GSM1194888", "GSM1194892" ], "type": "growth protocol", "id": "GDS5636_3" }, { "dataset_id": "GDS5636", "description": "TH2 conditions for 4 days", "sample_id": [ "GSM1194893", "GSM1194889" ], "type": "growth protocol", "id": "GDS5636_4" }, { "dataset_id": "GDS5636", "description": "TH17 conditions for 4 days", "sample_id": [ "GSM1194894", "GSM1194890" ], "type": "growth protocol", "id": "GDS5636_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5636", "version": 1.0, "instances": "6", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5636.tab", "compression": "gz" } ], [ [ "GDS5637.tab" ], { "title": "Platelet-derived growth factor inhibitor effect on lymphocytic cells expressing FIP1L1-PDGFR\u03b1 or ETV6-PDGFR\u03b2", "description": "Analysis of Ba/F3 cells expressing a constitutively active form of PDGFR\u03b1 or PDGFR\u03b2 oncogene (Fip1L1-PDGFR\u03b1 or TEL-PDGFR\u03b2) and treated with imatinib (Glivec), a potent PDGFR inhibitor. Results provide insight into target genes of the PI3K/PKB/FOXO pathway downstream of growth factor stimulation.", "type": "Expression profiling by array", "pubmed_id": "24762137", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE44810", "order": "none", "update_date": "Oct 02 2015", "subsets": [ { "dataset_id": "GDS5637", "description": "control", "sample_id": [ "GSM1091977", "GSM1091978" ], "type": "genotype/variation", "id": "GDS5637_1" }, { "dataset_id": "GDS5637", "description": "ETV6-PDGFRB expression", "sample_id": [ "GSM1091979", "GSM1091980" ], "type": "genotype/variation", "id": "GDS5637_2" }, { "dataset_id": "GDS5637", "description": "FIP1L1-PDGFRA expression", "sample_id": [ "GSM1091981", "GSM1091982" ], "type": "genotype/variation", "id": "GDS5637_3" }, { "dataset_id": "GDS5637", "description": "interleukin 3", "sample_id": [ "GSM1091977", "GSM1091978" ], "type": "growth protocol", "id": "GDS5637_4" }, { "dataset_id": "GDS5637", "description": "control", "sample_id": [ "GSM1091979", "GSM1091980", "GSM1091981", "GSM1091982" ], "type": "growth protocol", "id": "GDS5637_5" }, { "dataset_id": "GDS5637", "description": "control", "sample_id": [ "GSM1091977", "GSM1091979", "GSM1091981" ], "type": "agent", "id": "GDS5637_6" }, { "dataset_id": "GDS5637", "description": "imatinib", "sample_id": [ "GSM1091978", "GSM1091982", "GSM1091980" ], "type": "agent", "id": "GDS5637_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5637", "version": 1.0, "instances": "6", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5637.tab", "compression": "gz" } ], [ [ "GDS5638.tab" ], { "title": "Epithelial stem cells derived from induced pluripotent stem cells", "description": "Analysis of induced pluripotent stem cell-derived epithelial stem cells (hiPSC-EpSCs). The hiPSCs, which were derived from adult dermal fibroblasts, and hEpSCs directly isolated from hair follicles also examined. Results provide insight into molecular similarities between hiPSC-EpSCs and hEpSCs.", "type": "Expression profiling by array", "pubmed_id": [ "24468981", "25510211" ], "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE51028", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5638", "description": "normal skin", "sample_id": [ "GSM1235179", "GSM1235180", "GSM1235181", "GSM1235182", "GSM1235183" ], "type": "tissue", "id": "GDS5638_1" }, { "dataset_id": "GDS5638", "description": "fetal scalp", "sample_id": [ "GSM1235184", "GSM1235185" ], "type": "tissue", "id": "GDS5638_2" }, { "dataset_id": "GDS5638", "description": "hiPSC", "sample_id": [ "GSM1235179", "GSM1235180" ], "type": "cell type", "id": "GDS5638_3" }, { "dataset_id": "GDS5638", "description": "hiPSC-EpSC", "sample_id": [ "GSM1235181", "GSM1235182", "GSM1235183" ], "type": "cell type", "id": "GDS5638_4" }, { "dataset_id": "GDS5638", "description": "hEpSC", "sample_id": [ "GSM1235184", "GSM1235185" ], "type": "cell type", "id": "GDS5638_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5638", "version": 1.0, "instances": "7", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5638.tab", "compression": "gz" } ], [ [ "GDS5639.tab" ], { "title": "Phorbol myristate acetate plus ionomycin activation effect on primary T lymphoblasts and their exosomes", "description": "Analysis of primary T lymphoblasts and derived exosomes after activation with PMA plus ionomycin. Exosomes contain specific RNA species and can be functionally transferred to recipient cells. Results provide insight into molecular mechanisms underlying the selective sorting of RNA into exosomes.", "type": "Expression profiling by array", "pubmed_id": "24356509", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE50971", "order": "none", "update_date": "Oct 02 2015", "subsets": [ { "dataset_id": "GDS5639", "description": "activated", "sample_id": [ "GSM1233500", "GSM1233501", "GSM1233504", "GSM1233505" ], "type": "protocol", "id": "GDS5639_1" }, { "dataset_id": "GDS5639", "description": "control", "sample_id": [ "GSM1233502", "GSM1233503", "GSM1233506", "GSM1233507" ], "type": "protocol", "id": "GDS5639_2" }, { "dataset_id": "GDS5639", "description": "T-cell", "sample_id": [ "GSM1233500", "GSM1233501", "GSM1233502", "GSM1233503" ], "type": "cell type", "id": "GDS5639_3" }, { "dataset_id": "GDS5639", "description": "T-cell exosome", "sample_id": [ "GSM1233504", "GSM1233505", "GSM1233506", "GSM1233507" ], "type": "cell type", "id": "GDS5639_4" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS5639", "version": 1.0, "instances": "8", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5639.tab", "compression": "gz" } ], [ [ "GDS564.tab" ], { "title": "Sex specific transcription in hypothalamus", "description": "Examination of sex specific transcription in hypothalamus using postmortem samples from individuals averaging 70 years of age.", "type": "Expression profiling by array", "pubmed_id": "15177028", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE1147", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS564", "description": "male", "sample_id": [ "GSM19192", "GSM19193", "GSM19194", "GSM19195", "GSM19196", "GSM19197", "GSM19198", "GSM19199", "GSM19200", "GSM19201", "GSM19202", "GSM19203", "GSM19204", "GSM19205" ], "type": "gender", "id": "GDS564_1" }, { "dataset_id": "GDS564", "description": "female", "sample_id": [ "GSM19206", "GSM19207", "GSM19208", "GSM19209", "GSM19210", "GSM19211", "GSM19212", "GSM19213", "GSM19214" ], "type": "gender", "id": "GDS564_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS564", "version": 1.0, "instances": "23", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS564.tab", "compression": "gz" } ], [ [ "GDS5640.tab" ], { "title": "Double-knockout p53/PRKDC model of B cell acute lymphoblastic leukemia: leukemic blasts", "description": "Analysis of leukemic blasts from p53/Prkdc double-knockout mutants that spontaneously develop early B cell acute lymphoblastic leukemia (B-ALL). Results provide insight into molecular mechanisms underlying high-risk B-ALL.", "type": "Expression profiling by array", "pubmed_id": "24828076", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE56345", "order": "none", "update_date": "Oct 02 2015", "subsets": [ { "dataset_id": "GDS5640", "description": "wild type", "sample_id": [ "GSM1359549", "GSM1359550", "GSM1359551", "GSM1359555", "GSM1359556", "GSM1359557" ], "type": "genotype/variation", "id": "GDS5640_1" }, { "dataset_id": "GDS5640", "description": "p53/Prkdc double-knockout", "sample_id": [ "GSM1359552", "GSM1359553", "GSM1359554" ], "type": "genotype/variation", "id": "GDS5640_2" }, { "dataset_id": "GDS5640", "description": "pre-B cell", "sample_id": [ "GSM1359549", "GSM1359550", "GSM1359551" ], "type": "cell type", "id": "GDS5640_3" }, { "dataset_id": "GDS5640", "description": "pro-B cell", "sample_id": [ "GSM1359555", "GSM1359556", "GSM1359557" ], "type": "cell type", "id": "GDS5640_4" }, { "dataset_id": "GDS5640", "description": "leukemic B-cell", "sample_id": [ "GSM1359552", "GSM1359553", "GSM1359554" ], "type": "cell type", "id": "GDS5640_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5640", "version": 1.0, "instances": "9", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5640.tab", "compression": "gz" } ], [ [ "GDS5641.tab" ], { "title": "Retinoblastoma \u2206G/\u2206G mutant allele effect on quiescent embryonic fibroblasts", "description": "Analysis of retinoblastoma (RB) \u2206G/\u2206G mutant MEFs deprived of serum to induce quiescence. The mutant allele disrupts RB protein (pRB) interactions with the transactivation domain of E2F transcription factors. Results provide insight into pRB functions in cell cycle control independent of E2F.", "type": "Expression profiling by array", "pubmed_id": "24662053", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE54924", "order": "none", "update_date": "Oct 05 2015", "subsets": [ { "dataset_id": "GDS5641", "description": "Rb1 +/+", "sample_id": [ "GSM1326600", "GSM1326601", "GSM1326602" ], "type": "genotype/variation", "id": "GDS5641_1" }, { "dataset_id": "GDS5641", "description": "Rb1 \u2206G/\u2206G", "sample_id": [ "GSM1326603", "GSM1326604", "GSM1326605" ], "type": "genotype/variation", "id": "GDS5641_2" }, { "dataset_id": "GDS5641", "description": "Rb1 -/-", "sample_id": [ "GSM1326606", "GSM1326607", "GSM1326608" ], "type": "genotype/variation", "id": "GDS5641_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5641", "version": 1.0, "instances": "9", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5641.tab", "compression": "gz" } ], [ [ "GDS5642.tab" ], { "title": "Tendon development: embryonic limb tendon cells", "description": "Analysis of tendon cells isolated by FACS from forelimbs of embryonic day 11.5, E12.5 and E14.5 scleraxis (Scx)-GFP embryos. Basic helix-loop-helix transcription factor Scx is a specific tendon and ligament marker. Results provide insight into molecular pathways involved in tendon development.", "type": "Expression profiling by array", "pubmed_id": "25249460", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE54207", "order": "ordered", "update_date": "Oct 05 2015", "subsets": [ { "dataset_id": "GDS5642", "description": "E11.5", "sample_id": [ "GSM1310173", "GSM1310176", "GSM1310179" ], "type": "age", "id": "GDS5642_1" }, { "dataset_id": "GDS5642", "description": "E12.5", "sample_id": [ "GSM1310174", "GSM1310177", "GSM1310180" ], "type": "age", "id": "GDS5642_2" }, { "dataset_id": "GDS5642", "description": "E14.5", "sample_id": [ "GSM1310175", "GSM1310178", "GSM1310181" ], "type": "age", "id": "GDS5642_3" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5642", "version": 1.0, "instances": "9", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5642.tab", "compression": "gz" } ], [ [ "GDS5644.tab" ], { "title": "Transforming growth factor, beta receptor II knockout effect on embryonic posterior palate", "description": "Analysis of posterior portions of the palate from E15.5 embryos with an epithelial cell-specific conditional inactivation of Transforming growth factor, beta receptor II (Tgfbr2). Results, together with those from GDS4921, provide insight into the role of TGF\u03b2 signaling in soft palate development.", "type": "Expression profiling by array", "pubmed_id": "24496627", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE46211", "order": "none", "update_date": "Oct 05 2015", "subsets": [ { "dataset_id": "GDS5644", "description": "wild type", "sample_id": [ "GSM1126420", "GSM1126421", "GSM1126422", "GSM1126423", "GSM1126424", "GSM1126425" ], "type": "genotype/variation", "id": "GDS5644_1" }, { "dataset_id": "GDS5644", "description": "K14-Cre;Tgfbr2 fl/fl mutant", "sample_id": [ "GSM1126426", "GSM1126427", "GSM1126428", "GSM1126429", "GSM1126430", "GSM1126431" ], "type": "genotype/variation", "id": "GDS5644_2" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5644", "version": 1.0, "instances": "12", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5644.tab", "compression": "gz" } ], [ [ "GDS5645.tab" ], { "title": "v-raf murine sarcoma viral oncogene homolog B-mutant thyroid carcinoma tumors", "description": "Analysis of papillary thyroid carcinoma (TPOCreER; BrafV600E) and anaplastic thyroid carcinoma (TPOCreER; BrafV600E; p53 -/-) tumors. BRAF and TP53 mutations co-occur often in ATCs, especially those with a precursor PTC. Results provide insight into the molecular basis of PTC to ATC progression.", "type": "Expression profiling by array", "pubmed_id": "24711431", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "transformed count", "reference_series": "GSE55933", "order": "none", "update_date": "Oct 06 2015", "subsets": [ { "dataset_id": "GDS5645", "description": "Papillary Thyroid Carcinoma tumor", "sample_id": [ "GSM1348733", "GSM1348734", "GSM1348735", "GSM1348736", "GSM1348737" ], "type": "tissue", "id": "GDS5645_1" }, { "dataset_id": "GDS5645", "description": "Anaplastic Thyroid Carcinoma tumor", "sample_id": [ "GSM1348738", "GSM1348739", "GSM1348740", "GSM1348741", "GSM1348742" ], "type": "tissue", "id": "GDS5645_2" }, { "dataset_id": "GDS5645", "description": "TPOCreER; BrafV600E; p53 -/-", "sample_id": [ "GSM1348738", "GSM1348739", "GSM1348740", "GSM1348741", "GSM1348742" ], "type": "genotype/variation", "id": "GDS5645_3" }, { "dataset_id": "GDS5645", "description": "TPOCreER; BrafV600E", "sample_id": [ "GSM1348733", "GSM1348734", "GSM1348735", "GSM1348736", "GSM1348737" ], "type": "genotype/variation", "id": "GDS5645_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5645", "version": 1.0, "instances": "10", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5645.tab", "compression": "gz" } ], [ [ "GDS5646.tab" ], { "title": "Early Parkinson's disease: peripheral blood", "description": "Analysis of peripheral blood of untreated patients with stage 1 Parkinson's disease (PD), according to the Hoehn-Yahr scale, and paired healthy, age- and sex-matched controls. Results provide insight into molecular mechanisms underlying the initiation of the development of PD.", "type": "Expression profiling by array", "pubmed_id": "24804238", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE54536", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5646", "description": "Parkinson's disease", "sample_id": [ "GSM1318547", "GSM1318548", "GSM1318549", "GSM1318550", "GSM1318551" ], "type": "disease state", "id": "GDS5646_1" }, { "dataset_id": "GDS5646", "description": "healthy", "sample_id": [ "GSM1318552", "GSM1318553", "GSM1318554", "GSM1318555", "GSM1318556" ], "type": "disease state", "id": "GDS5646_2" }, { "dataset_id": "GDS5646", "description": "patient 1", "sample_id": [ "GSM1318547" ], "type": "individual", "id": "GDS5646_3" }, { "dataset_id": "GDS5646", "description": "patient 2", "sample_id": [ "GSM1318548" ], "type": "individual", "id": "GDS5646_4" }, { "dataset_id": "GDS5646", "description": "patient 3", "sample_id": [ "GSM1318549" ], "type": "individual", "id": "GDS5646_5" }, { "dataset_id": "GDS5646", "description": "patient 4", "sample_id": [ "GSM1318550" ], "type": "individual", "id": "GDS5646_6" }, { "dataset_id": "GDS5646", "description": "pooled PD patients", "sample_id": [ "GSM1318551" ], "type": "individual", "id": "GDS5646_7" }, { "dataset_id": "GDS5646", "description": "control 1", "sample_id": [ "GSM1318552" ], "type": "individual", "id": "GDS5646_8" }, { "dataset_id": "GDS5646", "description": "control 2", "sample_id": [ "GSM1318553" ], "type": "individual", "id": "GDS5646_9" }, { "dataset_id": "GDS5646", "description": "control 3", "sample_id": [ "GSM1318554" ], "type": "individual", "id": "GDS5646_10" }, { "dataset_id": "GDS5646", "description": "control 4", "sample_id": [ "GSM1318555" ], "type": "individual", "id": "GDS5646_11" }, { "dataset_id": "GDS5646", "description": "pooled controls", "sample_id": [ "GSM1318556" ], "type": "individual", "id": "GDS5646_12" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5646", "version": 1.0, "instances": "10", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5646.tab", "compression": "gz" } ], [ [ "GDS5648.tab" ], { "title": "Chronic high-calorie diet effect on Kras-driven lung tumors", "description": "Analysis of lung tumors isolated from mice that develop KRAS-driven lung tumors. The KrasG12D mice were fed a high-calorie diet (HCD) starting 12 wk before tumor induction; tumors were collected 11 wk after tumor induction. Results provide insight into HCD effects on KRAS-driven lung tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "25533479", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE56260", "order": "none", "update_date": "Oct 20 2015", "subsets": [ { "dataset_id": "GDS5648", "description": "standard diet", "sample_id": [ "GSM1357899", "GSM1357900", "GSM1357901", "GSM1357902", "GSM1357903" ], "type": "growth protocol", "id": "GDS5648_1" }, { "dataset_id": "GDS5648", "description": "high calorie diet", "sample_id": [ "GSM1357904", "GSM1357905", "GSM1357906", "GSM1357907", "GSM1357908", "GSM1357909" ], "type": "growth protocol", "id": "GDS5648_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5648", "version": 1.0, "instances": "11", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5648.tab", "compression": "gz" } ], [ [ "GDS5649.tab" ], { "title": "Bladder cancer extracellular vesicles", "description": "Analysis of extracellular vesicles (EVs) from the urine of bladder cancer (BC) patients. Results provide insight into the potential use of mRNAs associated with urinary EVs as non-invasive diagnostic biomarkers of BC.", "type": "Expression profiling by array", "pubmed_id": "24458310", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE51843", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5649", "description": "control", "sample_id": [ "GSM1253682", "GSM1253683", "GSM1253684", "GSM1253685", "GSM1253686", "GSM1253687" ], "type": "disease state", "id": "GDS5649_1" }, { "dataset_id": "GDS5649", "description": "bladder cancer", "sample_id": [ "GSM1253688", "GSM1253689", "GSM1253690", "GSM1253691", "GSM1253692" ], "type": "disease state", "id": "GDS5649_2" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5649", "version": 1.0, "instances": "11", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5649.tab", "compression": "gz" } ], [ [ "GDS565.tab" ], { "title": "Sex specific transcription in somatic and reproductive tissues", "description": "Analysis of sex specific transcription in somatic and reproductive tissues. Hypothalamus, liver, kidney, ovary, and testis tissues pooled from 10 different animals examined.", "type": "Expression profiling by array", "pubmed_id": "15177028", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE1148", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS565", "description": "hypothalamus", "sample_id": [ "GSM19215", "GSM19216", "GSM19217", "GSM19218", "GSM19219", "GSM19220", "GSM19221", "GSM19222", "GSM19223", "GSM19224", "GSM19225", "GSM19226" ], "type": "tissue", "id": "GDS565_1" }, { "dataset_id": "GDS565", "description": "liver", "sample_id": [ "GSM19227", "GSM19228", "GSM19229", "GSM19230", "GSM19231", "GSM19232", "GSM19233", "GSM19234", "GSM19235", "GSM19236", "GSM19237", "GSM19238" ], "type": "tissue", "id": "GDS565_2" }, { "dataset_id": "GDS565", "description": "kidney", "sample_id": [ "GSM19239", "GSM19240", "GSM19241", "GSM19242", "GSM19243", "GSM19244", "GSM19245", "GSM19246", "GSM19247", "GSM19248", "GSM19249", "GSM19250" ], "type": "tissue", "id": "GDS565_3" }, { "dataset_id": "GDS565", "description": "testis", "sample_id": [ "GSM19251", "GSM19252", "GSM19253", "GSM19254", "GSM19255", "GSM19256" ], "type": "tissue", "id": "GDS565_4" }, { "dataset_id": "GDS565", "description": "ovary", "sample_id": [ "GSM19257", "GSM19258", "GSM19259", "GSM19260", "GSM19261", "GSM19262" ], "type": "tissue", "id": "GDS565_5" }, { "dataset_id": "GDS565", "description": "male", "sample_id": [ "GSM19215", "GSM19216", "GSM19217", "GSM19218", "GSM19219", "GSM19220", "GSM19227", "GSM19228", "GSM19229", "GSM19230", "GSM19231", "GSM19232", "GSM19239", "GSM19240", "GSM19241", "GSM19242", "GSM19243", "GSM19244", "GSM19251", "GSM19252", "GSM19253", "GSM19254", "GSM19255", "GSM19256" ], "type": "gender", "id": "GDS565_6" }, { "dataset_id": "GDS565", "description": "female", "sample_id": [ "GSM19221", "GSM19222", "GSM19223", "GSM19224", "GSM19225", "GSM19226", "GSM19233", "GSM19234", "GSM19235", "GSM19236", "GSM19237", "GSM19238", "GSM19245", "GSM19246", "GSM19247", "GSM19248", "GSM19249", "GSM19250", "GSM19257", "GSM19258", "GSM19259", "GSM19260", "GSM19261", "GSM19262" ], "type": "gender", "id": "GDS565_7" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS565", "version": 1.0, "instances": "48", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS565.tab", "compression": "gz" } ], [ [ "GDS5651.tab" ], { "title": "DNA methyltransferase inhibitor 5-Aza-2\u2019deoxycytidine effect on partially-ligated left carotid artery", "description": "Analysis of arteries from C57BL/6 males pretreated with DNMT inhibitor 5Aza for 2 wk, then subjected to partial carotid ligation (PCL) and continued 5Aza treatment for 1 wk after ligation. PCL induces disturbed blood flow. Results provide insight into molecular basis of atherosclerosis development.", "type": "Expression profiling by array", "pubmed_id": "24865430", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE56143", "order": "none", "update_date": "Oct 23 2015", "subsets": [ { "dataset_id": "GDS5651", "description": "5Aza", "sample_id": [ "GSM1356646", "GSM1356647", "GSM1356648", "GSM1356649", "GSM1356650", "GSM1356651" ], "type": "agent", "id": "GDS5651_1" }, { "dataset_id": "GDS5651", "description": "control", "sample_id": [ "GSM1356640", "GSM1356641", "GSM1356642", "GSM1356643", "GSM1356644", "GSM1356645" ], "type": "agent", "id": "GDS5651_2" }, { "dataset_id": "GDS5651", "description": "ligated", "sample_id": [ "GSM1356646", "GSM1356647", "GSM1356648", "GSM1356640", "GSM1356641", "GSM1356642" ], "type": "protocol", "id": "GDS5651_3" }, { "dataset_id": "GDS5651", "description": "unligated", "sample_id": [ "GSM1356649", "GSM1356650", "GSM1356651", "GSM1356643", "GSM1356644", "GSM1356645" ], "type": "protocol", "id": "GDS5651_4" }, { "dataset_id": "GDS5651", "description": "left carotid artery", "sample_id": [ "GSM1356640", "GSM1356641", "GSM1356642", "GSM1356646", "GSM1356647", "GSM1356648" ], "type": "tissue", "id": "GDS5651_5" }, { "dataset_id": "GDS5651", "description": "right carotid artery", "sample_id": [ "GSM1356643", "GSM1356644", "GSM1356645", "GSM1356649", "GSM1356650", "GSM1356651" ], "type": "tissue", "id": "GDS5651_6" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5651", "version": 1.0, "instances": "12", "variables": 28108, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5651.tab", "compression": "gz" } ], [ [ "GDS5654.tab" ], { "title": "Subcutaneous and visceral adipose tissues", "description": "Analysis of adipose tissue from two subcutaneous depots (inguinal and axillary) and two visceral depots (epididymal and mesenteric) from age-matched, C57Bl/6 males. SubQ and VISC represent two broad categories of obesity. Results provide insight into fat depot-specific molecular profiles.", "type": "Expression profiling by array", "pubmed_id": "24439384", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE53307", "order": "none", "update_date": "Oct 27 2015", "subsets": [ { "dataset_id": "GDS5654", "description": "subcutaneous adipose", "sample_id": [ "GSM1289208", "GSM1289209", "GSM1289210", "GSM1289214", "GSM1289215", "GSM1289216" ], "type": "tissue", "id": "GDS5654_1" }, { "dataset_id": "GDS5654", "description": "visceral adipose", "sample_id": [ "GSM1289211", "GSM1289212", "GSM1289213", "GSM1289217", "GSM1289218", "GSM1289219" ], "type": "tissue", "id": "GDS5654_2" }, { "dataset_id": "GDS5654", "description": "inguinal depot", "sample_id": [ "GSM1289208", "GSM1289209", "GSM1289210" ], "type": "other", "id": "GDS5654_3" }, { "dataset_id": "GDS5654", "description": "axillary depot", "sample_id": [ "GSM1289214", "GSM1289215", "GSM1289216" ], "type": "other", "id": "GDS5654_4" }, { "dataset_id": "GDS5654", "description": "epididymal depot", "sample_id": [ "GSM1289211", "GSM1289212", "GSM1289213" ], "type": "other", "id": "GDS5654_5" }, { "dataset_id": "GDS5654", "description": "mesenteric depot", "sample_id": [ "GSM1289217", "GSM1289218", "GSM1289219" ], "type": "other", "id": "GDS5654_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5654", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5654.tab", "compression": "gz" } ], [ [ "GDS5655.tab" ], { "title": "Lymphotoxin-\u03b2 receptor agonist antibody effect on lipopolysaccharide-stimulated embryonic fibroblasts", "description": "Analysis of MEFs treated for 24hrs with ligands lipopolysaccharide (LPS), lymphotoxin-\u03b2 receptor agonist antibody (LT\u03b2R), and LPS+ LT\u03b2R. Results provide insight into molecular mechanisms underlying a potentially synergistic effect of LT\u03b2R signaling on LPS-TLR4 signaling.", "type": "Expression profiling by array", "pubmed_id": "25905673", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE62301", "order": "none", "update_date": "Oct 27 2015", "subsets": [ { "dataset_id": "GDS5655", "description": "untreated", "sample_id": [ "GSM1525024" ], "type": "protocol", "id": "GDS5655_1" }, { "dataset_id": "GDS5655", "description": "LPS", "sample_id": [ "GSM1525025" ], "type": "protocol", "id": "GDS5655_2" }, { "dataset_id": "GDS5655", "description": "LT\u03b2R", "sample_id": [ "GSM1525026" ], "type": "protocol", "id": "GDS5655_3" }, { "dataset_id": "GDS5655", "description": "LT\u03b2R + LPS", "sample_id": [ "GSM1525027" ], "type": "protocol", "id": "GDS5655_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5655", "version": 1.0, "instances": "4", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5655.tab", "compression": "gz" } ], [ [ "GDS5656.tab" ], { "title": "Forkhead box O 1,3,4 muscle-specific knockout effect on fasted gastrocnemius muscle", "description": "Analysis of gastrocnemius muscle from starved males with muscle-specific deletion of Forkhead Box O transcription factors 1, 3 and 4 (FoxO1,3,4-/-). Results provide insight into the collective roles of FoxOs during muscle atrophy.", "type": "Expression profiling by array", "pubmed_id": "25858807", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE52667", "order": "none", "update_date": "Oct 30 2015", "subsets": [ { "dataset_id": "GDS5656", "description": "FoxO 1,3,4 muscle-specific knockout", "sample_id": [ "GSM1273850", "GSM1273851" ], "type": "genotype/variation", "id": "GDS5656_1" }, { "dataset_id": "GDS5656", "description": "wild type", "sample_id": [ "GSM1273848", "GSM1273849" ], "type": "genotype/variation", "id": "GDS5656_2" }, { "dataset_id": "GDS5656", "description": "starved", "sample_id": [ "GSM1273849", "GSM1273851" ], "type": "stress", "id": "GDS5656_3" }, { "dataset_id": "GDS5656", "description": "fed", "sample_id": [ "GSM1273848", "GSM1273850" ], "type": "stress", "id": "GDS5656_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5656", "version": 1.0, "instances": "4", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5656.tab", "compression": "gz" } ], [ [ "GDS5657.tab" ], { "title": "Transcription factor Cabut deficiency and overexpression effects on heads: time course", "description": "Analysis of heads from strains overexpressing Cabut (cbtOE) or depleted for Cabut (cbtRNAi) at two time points during the day-night cycle (i.e., 3 hr after light-on or light-off). Kr\u00fcppel\u2010like factors Klf10 and Klf11 are close mammalian homologs of cbt. Results provide insight into role of CBT.", "type": "Expression profiling by array", "pubmed_id": "25916830", "platform": "GPL1322", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "18952", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE67865", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5657", "description": "wild type", "sample_id": [ "GSM1657354", "GSM1657355" ], "type": "genotype/variation", "id": "GDS5657_1" }, { "dataset_id": "GDS5657", "description": "Cabut overexpression", "sample_id": [ "GSM1657356", "GSM1657357" ], "type": "genotype/variation", "id": "GDS5657_2" }, { "dataset_id": "GDS5657", "description": "Cabut depletion", "sample_id": [ "GSM1657358", "GSM1657359" ], "type": "genotype/variation", "id": "GDS5657_3" }, { "dataset_id": "GDS5657", "description": "ZT3", "sample_id": [ "GSM1657354", "GSM1657356", "GSM1657358" ], "type": "time", "id": "GDS5657_4" }, { "dataset_id": "GDS5657", "description": "ZT15", "sample_id": [ "GSM1657355", "GSM1657357", "GSM1657359" ], "type": "time", "id": "GDS5657_5" } ], "taxid": "7227", "genes": 16711, "aggregation_function": "mean", "name": "GDS5657", "version": 1.0, "instances": "6", "variables": 16714, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5657.tab", "compression": "gz" } ], [ [ "GDS5658.tab" ], { "title": "Retinoid X receptor activation effect on stimulated RAW264.7 cells", "description": "Analysis of RAW 264.7 macrophages pre-treated with vitamin A derivative 9cis-retinoic acid (9cRA), then stimulated with bacterial LPS or viral mimetic polyI:C. 9cRA is a high affinity ligand for retinoid X receptor (RXR). Results provide insight into the role of RXR in host antiviral response.", "type": "Expression profiling by array", "pubmed_id": "25417649", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE62107", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5658", "description": "9cis-retinoic acid pretreatment", "sample_id": [ "GSM1519709", "GSM1519711", "GSM1519713" ], "type": "protocol", "id": "GDS5658_1" }, { "dataset_id": "GDS5658", "description": "DMSO pretreatment", "sample_id": [ "GSM1519708", "GSM1519710", "GSM1519712" ], "type": "protocol", "id": "GDS5658_2" }, { "dataset_id": "GDS5658", "description": "polyI:C", "sample_id": [ "GSM1519712", "GSM1519713" ], "type": "stress", "id": "GDS5658_3" }, { "dataset_id": "GDS5658", "description": "LPS", "sample_id": [ "GSM1519710", "GSM1519711" ], "type": "stress", "id": "GDS5658_4" }, { "dataset_id": "GDS5658", "description": "control", "sample_id": [ "GSM1519708", "GSM1519709" ], "type": "stress", "id": "GDS5658_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5658", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5658.tab", "compression": "gz" } ], [ [ "GDS5659.tab" ], { "title": "Rho-associated kinase deficiency effect on coronary artery smooth muscle cells in vitro", "description": "Analysis of cultured vascular smooth muscle cells following knockdown of Rho-associated kinase 1 (ROCK1). ROCK1 phosphorylates and activates zipper-interacting protein kinase (ZIPK). These results, together with those from GDSxxxx, provide further insight into ROCK1 and ZIPK functions.", "type": "Expression profiling by array", "pubmed_id": "25723491", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE56819", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5659", "description": "control", "sample_id": [ "GSM1369856", "GSM1369857", "GSM1369858" ], "type": "genotype/variation", "id": "GDS5659_1" }, { "dataset_id": "GDS5659", "description": "ROCK1 knockdown", "sample_id": [ "GSM1369859", "GSM1369860", "GSM1369861" ], "type": "genotype/variation", "id": "GDS5659_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5659", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5659.tab", "compression": "gz" } ], [ [ "GDS5660.tab" ], { "title": "Early postnatal skeletal muscle stem cells: time course", "description": "Analysis of myogenic stem cells called satellite cells (mSCs) FACS-sorted from the trunk of Pax3GFP/+ mice at postnatal days 1, 12, and 28, a period when most mSCs are in proliferation and quiescence states. Results provide insight into molecular basis of early postnatal skeletal muscle development.", "type": "Expression profiling by array", "pubmed_id": "25742797", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE65927", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5660", "description": "postnatal day 1", "sample_id": [ "GSM1611267", "GSM1611268", "GSM1611269", "GSM1611270" ], "type": "age", "id": "GDS5660_1" }, { "dataset_id": "GDS5660", "description": "postnatal day 12", "sample_id": [ "GSM1611271", "GSM1611272", "GSM1611273", "GSM1611274" ], "type": "age", "id": "GDS5660_2" }, { "dataset_id": "GDS5660", "description": "postnatal day 28", "sample_id": [ "GSM1611275", "GSM1611276", "GSM1611277" ], "type": "age", "id": "GDS5660_3" }, { "dataset_id": "GDS5660", "description": "trunk muscles including skeletal muscle proliferating satellite cells", "sample_id": [ "GSM1611267", "GSM1611268", "GSM1611269", "GSM1611270", "GSM1611271", "GSM1611272", "GSM1611273", "GSM1611274" ], "type": "tissue", "id": "GDS5660_4" }, { "dataset_id": "GDS5660", "description": "abdominal, pectoral and intercostal muscle including skeletal muscle satellite cells", "sample_id": [ "GSM1611275", "GSM1611276", "GSM1611277" ], "type": "tissue", "id": "GDS5660_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5660", "version": 1.0, "instances": "11", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5660.tab", "compression": "gz" } ], [ [ "GDS5661.tab" ], { "title": "Interleukin 7 and FLT-3 ligand effect on EML1 HSPC line expressing acute lymphoblastic leukemia TEL-AML1 fusion protein: time course", "description": "Analysis of TEL-AML1 oncogene-expressing hematopoietic stem/progenitor cell line EML1 treated with interleukin 7 (IL7) and FLT3 ligand (FLT3L) for up to 7 days. IL7 and FLT3L treatment induces B-cell differentiation. Results provide insight into the role of TEL-AML1 in early B-cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "25893288", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE64919", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5661", "description": "TEL-AML1 expression", "sample_id": [ "GSM1583306", "GSM1583307", "GSM1583308", "GSM1583309", "GSM1583310", "GSM1583305" ], "type": "genotype/variation", "id": "GDS5661_1" }, { "dataset_id": "GDS5661", "description": "control", "sample_id": [ "GSM1583299", "GSM1583300", "GSM1583301", "GSM1583302", "GSM1583303", "GSM1583304" ], "type": "genotype/variation", "id": "GDS5661_2" }, { "dataset_id": "GDS5661", "description": "IL7 and FLT3L", "sample_id": [ "GSM1583304", "GSM1583303", "GSM1583302", "GSM1583301", "GSM1583310", "GSM1583309", "GSM1583308", "GSM1583307" ], "type": "protocol", "id": "GDS5661_3" }, { "dataset_id": "GDS5661", "description": "untreated", "sample_id": [ "GSM1583300", "GSM1583299", "GSM1583306", "GSM1583305" ], "type": "protocol", "id": "GDS5661_4" }, { "dataset_id": "GDS5661", "description": "day 0", "sample_id": [ "GSM1583299", "GSM1583300", "GSM1583305", "GSM1583306" ], "type": "time", "id": "GDS5661_5" }, { "dataset_id": "GDS5661", "description": "day 5", "sample_id": [ "GSM1583307", "GSM1583308", "GSM1583301", "GSM1583302" ], "type": "time", "id": "GDS5661_6" }, { "dataset_id": "GDS5661", "description": "day 7", "sample_id": [ "GSM1583309", "GSM1583310", "GSM1583303", "GSM1583304" ], "type": "time", "id": "GDS5661_7" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS5661", "version": 1.0, "instances": "12", "variables": 25183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5661.tab", "compression": "gz" } ], [ [ "GDS5662.tab" ], { "title": "Histone demethylase KDM3A-deficiency effect on estrogen-stimulated breast cancer cells in vitro", "description": "Analysis of estrogen receptor (ER)-positive breast cancer cell line MCF-7 depleted for KDM3A (histone lysine demethylase 3A) then treated with estrogen. Histone lysine methylation is an important regulator of transcription. Results provide insight into role of KDM3A in ER signaling in breast cancer.", "type": "Expression profiling by array", "pubmed_id": "25488809", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE68918", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5662", "description": "KDM3A knockdown", "sample_id": [ "GSM1686438", "GSM1686442", "GSM1686436", "GSM1686440", "GSM1686444" ], "type": "genotype/variation", "id": "GDS5662_1" }, { "dataset_id": "GDS5662", "description": "control", "sample_id": [ "GSM1686437", "GSM1686441", "GSM1686445", "GSM1686435", "GSM1686439", "GSM1686443" ], "type": "genotype/variation", "id": "GDS5662_2" }, { "dataset_id": "GDS5662", "description": "estrogen", "sample_id": [ "GSM1686438", "GSM1686442", "GSM1686437", "GSM1686441", "GSM1686445" ], "type": "agent", "id": "GDS5662_3" }, { "dataset_id": "GDS5662", "description": "control", "sample_id": [ "GSM1686435", "GSM1686439", "GSM1686443", "GSM1686436", "GSM1686440", "GSM1686444" ], "type": "agent", "id": "GDS5662_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5662", "version": 1.0, "instances": "11", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5662.tab", "compression": "gz" } ], [ [ "GDS5663.tab" ], { "title": "Pulmonary dendritic cell subsets", "description": "Analysis of four dendritic cell (DC) subsets purified from the lungs of C57BL/6 males following inhalation of LPS/OVA. The four subsets represent conventional DCs (cDCs) and monocyte-derived DCs (moDCs). Results provide insight into molecular profiles that would discriminate between cDCs and moDCs.", "type": "Expression profiling by array", "pubmed_id": "25769922", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE64896", "order": "none", "update_date": "Nov 17 2015", "subsets": [ { "dataset_id": "GDS5663", "description": "CD103+ DC", "sample_id": [ "GSM1582752", "GSM1582753", "GSM1582754" ], "type": "cell type", "id": "GDS5663_1" }, { "dataset_id": "GDS5663", "description": "CD11bhi CD14lo DC", "sample_id": [ "GSM1582755", "GSM1582756", "GSM1582757" ], "type": "cell type", "id": "GDS5663_2" }, { "dataset_id": "GDS5663", "description": "CD11bhi CD14hi DC", "sample_id": [ "GSM1582758", "GSM1582759", "GSM1582760" ], "type": "cell type", "id": "GDS5663_3" }, { "dataset_id": "GDS5663", "description": "CD11bhi Ly6Chi DC", "sample_id": [ "GSM1582761", "GSM1582762", "GSM1582763" ], "type": "cell type", "id": "GDS5663_4" }, { "dataset_id": "GDS5663", "description": "conventional DC subsets", "sample_id": [ "GSM1582752", "GSM1582753", "GSM1582754", "GSM1582755", "GSM1582756", "GSM1582757" ], "type": "other", "id": "GDS5663_5" }, { "dataset_id": "GDS5663", "description": "monocyte-derived DC subsets", "sample_id": [ "GSM1582758", "GSM1582759", "GSM1582760", "GSM1582761", "GSM1582762", "GSM1582763" ], "type": "other", "id": "GDS5663_6" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5663", "version": 1.0, "instances": "12", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5663.tab", "compression": "gz" } ], [ [ "GDS5664.tab" ], { "title": "Estradiol effect on uterus of EAAE estrogen receptor \u03b1 DNA-binding-deficient model", "description": "Analysis of uteri from ovariectomized, EAAE ER\u03b1 DNA-binding domain mutants collected 2hrs after estradiol injection. The EAAE mouse has an ER\u03b1 null-like female reproductive tract phenotype. Results provide insight into the ability of EAAE ER\u03b1 to mediate transcriptional responses in the uterus.", "type": "Expression profiling by array", "pubmed_id": "24713037", "platform": "GPL4134", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE56423", "order": "none", "update_date": "Nov 17 2015", "subsets": [ { "dataset_id": "GDS5664", "description": "wild type", "sample_id": [ "GSM1361215", "GSM1361216", "GSM1361217", "GSM1361218", "GSM1361219", "GSM1361220" ], "type": "genotype/variation", "id": "GDS5664_1" }, { "dataset_id": "GDS5664", "description": "EAAE mutant", "sample_id": [ "GSM1361221", "GSM1361222", "GSM1361223", "GSM1361224", "GSM1361225", "GSM1361226" ], "type": "genotype/variation", "id": "GDS5664_2" }, { "dataset_id": "GDS5664", "description": "control", "sample_id": [ "GSM1361215", "GSM1361216", "GSM1361217", "GSM1361221", "GSM1361222", "GSM1361223" ], "type": "agent", "id": "GDS5664_3" }, { "dataset_id": "GDS5664", "description": "estradiol", "sample_id": [ "GSM1361218", "GSM1361219", "GSM1361220", "GSM1361224", "GSM1361225", "GSM1361226" ], "type": "agent", "id": "GDS5664_4" } ], "taxid": "10090", "genes": 28100, "aggregation_function": "mean", "name": "GDS5664", "version": 1.0, "instances": "12", "variables": 28103, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5664.tab", "compression": "gz" } ], [ [ "GDS5665.tab" ], { "title": "Pathogen-associated molecular-pattern curdlan effect on interleukin-2 deficient GM-CSF myeloid dendritic cells", "description": "Analysis of GM-CSF myeloid dendritic cells (GM-DCs) isolated from interleukin-2 (IL-2) knockouts and activated with curdlan, a pathogen-associated molecular pattern (PAMP). GM-DCs secrete cytokines such as IL-2, upon PAMP activation. Results provide insight into role of IL-2 signaling in DCs.", "type": "Expression profiling by array", "pubmed_id": "25652593", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE58120", "order": "none", "update_date": "Nov 19 2015", "subsets": [ { "dataset_id": "GDS5665", "description": "IL-2 knockout", "sample_id": [ "GSM1401293", "GSM1401292", "GSM1401298", "GSM1401302", "GSM1401297", "GSM1401301" ], "type": "genotype/variation", "id": "GDS5665_1" }, { "dataset_id": "GDS5665", "description": "wild type", "sample_id": [ "GSM1401300", "GSM1401295", "GSM1401291", "GSM1401296", "GSM1401294", "GSM1401299" ], "type": "genotype/variation", "id": "GDS5665_2" }, { "dataset_id": "GDS5665", "description": "curdlan", "sample_id": [ "GSM1401296", "GSM1401294", "GSM1401299", "GSM1401302", "GSM1401297", "GSM1401301" ], "type": "agent", "id": "GDS5665_3" }, { "dataset_id": "GDS5665", "description": "control", "sample_id": [ "GSM1401300", "GSM1401295", "GSM1401291", "GSM1401293", "GSM1401292", "GSM1401298" ], "type": "agent", "id": "GDS5665_4" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5665", "version": 1.0, "instances": "12", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5665.tab", "compression": "gz" } ], [ [ "GDS5666.tab" ], { "title": "4T1 breast cancer model: metastatic sub-populations", "description": "Analysis of parental mammary tumor cell line 4T1-derived metastatic populations isolated from liver, lung or bone. Results provide insight into molecular mechanisms associated with the different metastatic breast cancer sub-populations.", "type": "Expression profiling by array", "pubmed_id": "25882816", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE62598", "order": "none", "update_date": "Nov 19 2015", "subsets": [ { "dataset_id": "GDS5666", "description": "4T1 parental", "sample_id": [ "GSM1529765", "GSM1529766", "GSM1529767" ], "type": "cell type", "id": "GDS5666_1" }, { "dataset_id": "GDS5666", "description": "primary tumor explant", "sample_id": [ "GSM1529768", "GSM1529769", "GSM1529770" ], "type": "cell type", "id": "GDS5666_2" }, { "dataset_id": "GDS5666", "description": "lung-aggressive explant", "sample_id": [ "GSM1529771", "GSM1529772", "GSM1529773" ], "type": "cell type", "id": "GDS5666_3" }, { "dataset_id": "GDS5666", "description": "bone-aggressive explant", "sample_id": [ "GSM1529774", "GSM1529775", "GSM1529776" ], "type": "cell type", "id": "GDS5666_4" }, { "dataset_id": "GDS5666", "description": "liver-aggressive explant", "sample_id": [ "GSM1529777", "GSM1529778", "GSM1529779" ], "type": "cell type", "id": "GDS5666_5" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5666", "version": 1.0, "instances": "15", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5666.tab", "compression": "gz" } ], [ [ "GDS5667.tab" ], { "title": "Protein tyrosine phosphatase receptor-\u03b4 and cyclin-dependent kinase inhibitor 2A deficiency effect on RCAS PDGFB/Nestin tv-A glioma model", "description": "Analysis of RCAS PDGFB/Nestin tv-A glioma cells from Ptprd knockout and Cdkn2a/p16Ink4a knockout mice. PTPRD is a tumor suppressor of glioma that is often co-deleted with tumor suppressor p16INK4A. Results provide insight into the cooperative effects of PTPRD and p16INK4A loss in gliomagenesis.", "type": "Expression profiling by array", "pubmed_id": "24843164", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE55061", "order": "none", "update_date": "Nov 19 2015", "subsets": [ { "dataset_id": "GDS5667", "description": "Ptprd-/-p16-/-", "sample_id": [ "GSM1328951", "GSM1328948", "GSM1328949" ], "type": "genotype/variation", "id": "GDS5667_1" }, { "dataset_id": "GDS5667", "description": "Ptprd+/-p16-/-", "sample_id": [ "GSM1328946", "GSM1328944" ], "type": "genotype/variation", "id": "GDS5667_2" }, { "dataset_id": "GDS5667", "description": "Ptprd+/+p16-/-", "sample_id": [ "GSM1328943", "GSM1328942" ], "type": "genotype/variation", "id": "GDS5667_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5667", "version": 1.0, "instances": "7", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5667.tab", "compression": "gz" } ], [ [ "GDS5668.tab" ], { "title": "Macrophage-restricted interleukin-10 receptor deficiency effect on colonic resident macrophages", "description": "Analysis of FACS-sorted, interleukin-10 receptor (IL-10R)-deficient intestinal macrophages from 6-week-old C57BL/6 animals. IL-10 is a pleiotropic anti-inflammatory cytokine. Results provide insight into the role of IL-10 sensing by intestinal macrophages in gut homeostasis.", "type": "Expression profiling by array", "pubmed_id": "24792913", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "transformed count", "reference_series": "GSE56444", "order": "none", "update_date": "Dec 04 2015", "subsets": [ { "dataset_id": "GDS5668", "description": "wild type", "sample_id": [ "GSM1361640", "GSM1361641", "GSM1361642" ], "type": "genotype/variation", "id": "GDS5668_1" }, { "dataset_id": "GDS5668", "description": "macrophage-restricted IL-10 receptor deficient", "sample_id": [ "GSM1361643", "GSM1361644" ], "type": "genotype/variation", "id": "GDS5668_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5668", "version": 1.0, "instances": "5", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5668.tab", "compression": "gz" } ], [ [ "GDS5669.tab" ], { "title": "WHO grade IV primary glioblastoma of long-term survivors", "description": "Analysis of 7 patients with glioblastoma (GBM) treated at Memorial Sloan-Kettering Cancer Center, with survival > 48 months. These long-term survivors (LTSs) represent proneural, neural, classical, and mesenchymal subtypes of GBM. Results provide insight into molecular characteristics of GBM LTSs.", "type": "Expression profiling by array", "pubmed_id": "24662514", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "transformed count", "reference_series": "GSE54077", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5669", "description": "MSKCC LTS 201", "sample_id": [ "GSM1306838" ], "type": "individual", "id": "GDS5669_1" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 202", "sample_id": [ "GSM1306839" ], "type": "individual", "id": "GDS5669_2" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 203", "sample_id": [ "GSM1306840" ], "type": "individual", "id": "GDS5669_3" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 205", "sample_id": [ "GSM1306841" ], "type": "individual", "id": "GDS5669_4" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 207", "sample_id": [ "GSM1306842" ], "type": "individual", "id": "GDS5669_5" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 208", "sample_id": [ "GSM1306843" ], "type": "individual", "id": "GDS5669_6" }, { "dataset_id": "GDS5669", "description": "MSKCC LTS 209", "sample_id": [ "GSM1306844" ], "type": "individual", "id": "GDS5669_7" }, { "dataset_id": "GDS5669", "description": "Classical GBM", "sample_id": [ "GSM1306844", "GSM1306840" ], "type": "disease state", "id": "GDS5669_8" }, { "dataset_id": "GDS5669", "description": "Mesenchymal GBM", "sample_id": [ "GSM1306843" ], "type": "disease state", "id": "GDS5669_9" }, { "dataset_id": "GDS5669", "description": "Neural GBM", "sample_id": [ "GSM1306838", "GSM1306842" ], "type": "disease state", "id": "GDS5669_10" }, { "dataset_id": "GDS5669", "description": "Proneural GBM", "sample_id": [ "GSM1306839", "GSM1306841" ], "type": "disease state", "id": "GDS5669_11" }, { "dataset_id": "GDS5669", "description": "50.60 months survival", "sample_id": [ "GSM1306839" ], "type": "time", "id": "GDS5669_12" }, { "dataset_id": "GDS5669", "description": "58.57 months survival", "sample_id": [ "GSM1306841" ], "type": "time", "id": "GDS5669_13" }, { "dataset_id": "GDS5669", "description": "62.20 months survival", "sample_id": [ "GSM1306840" ], "type": "time", "id": "GDS5669_14" }, { "dataset_id": "GDS5669", "description": "62.50 months survival", "sample_id": [ "GSM1306844" ], "type": "time", "id": "GDS5669_15" }, { "dataset_id": "GDS5669", "description": "64.30 months survival", "sample_id": [ "GSM1306843" ], "type": "time", "id": "GDS5669_16" }, { "dataset_id": "GDS5669", "description": "92.07 months survival", "sample_id": [ "GSM1306838" ], "type": "time", "id": "GDS5669_17" }, { "dataset_id": "GDS5669", "description": "138.30 months survival", "sample_id": [ "GSM1306842" ], "type": "time", "id": "GDS5669_18" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS5669", "version": 1.0, "instances": "7", "variables": 14058, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5669.tab", "compression": "gz" } ], [ [ "GDS567.tab" ], { "title": "Cystic fibrosis pancreatic gene expression", "description": "Analysis of pancreas from 8 week male CFTR-/- and CFTR+/+ mice. The abnormally acidic duodenum in CF increases signaling from intestine to pancreas to stimulate bicarbonate ion secretion, leading to pancreatic stress and inflammation.", "type": "Expression profiling by array", "pubmed_id": "15064229", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE769", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS567", "description": "CFTR+/+", "sample_id": [ "GSM6764", "GSM6777", "GSM12128" ], "type": "genotype/variation", "id": "GDS567_1" }, { "dataset_id": "GDS567", "description": "CFTR-/-", "sample_id": [ "GSM12180", "GSM12181", "GSM12182" ], "type": "genotype/variation", "id": "GDS567_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS567", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS567.tab", "compression": "gz" } ], [ [ "GDS5670.tab" ], { "title": "Mesenchymal-to-amoeboid transition effect on Hs294T melanoma cells", "description": "Analysis of Hs294T melanoma cells following three different treatments that induce the mesenchymal to amoeboid transition (MAT) in melanoma cells: EphA2 overexpression, Ilomastat treatment, or RhoA activator Calpeptin treatment. Results provide insight into molecular mechanisms underlying MAT.", "type": "Expression profiling by array", "pubmed_id": "24690323", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE52246", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5670", "description": "control", "sample_id": [ "GSM1261851", "GSM1261847" ], "type": "protocol", "id": "GDS5670_1" }, { "dataset_id": "GDS5670", "description": "EphA2-overexpression", "sample_id": [ "GSM1261852", "GSM1261848" ], "type": "protocol", "id": "GDS5670_2" }, { "dataset_id": "GDS5670", "description": "Ilomastat treatment", "sample_id": [ "GSM1261853", "GSM1261849" ], "type": "protocol", "id": "GDS5670_3" }, { "dataset_id": "GDS5670", "description": "Rho activator Calpeptin treatment", "sample_id": [ "GSM1261850", "GSM1261846" ], "type": "protocol", "id": "GDS5670_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5670", "version": 1.0, "instances": "8", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5670.tab", "compression": "gz" } ], [ [ "GDS5671.tab" ], { "title": "Notch1 stimulation effect on glioblastoma stem cell cultures", "description": "Analysis of Gb4 and Gb7 glioma cancer stem cells following forced expression of the Notch1 intracellular domain (NICD) to activate the Notch1 signaling pathway. Results provide insight into a role for the Notch1 pathway in glioblastoma stem cell plasticity and angiogenic properties.", "type": "Expression profiling by array", "pubmed_id": "24898819", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE44561", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5671", "description": "embryonic neural stem cell", "sample_id": [ "GSM1086967", "GSM1086968" ], "type": "cell type", "id": "GDS5671_1" }, { "dataset_id": "GDS5671", "description": "Gb4 glioma stem cell", "sample_id": [ "GSM1086971", "GSM1086972" ], "type": "cell type", "id": "GDS5671_2" }, { "dataset_id": "GDS5671", "description": "Gb7 glioma stem cell", "sample_id": [ "GSM1086973", "GSM1086974" ], "type": "cell type", "id": "GDS5671_3" }, { "dataset_id": "GDS5671", "description": "U87 glioma cell line", "sample_id": [ "GSM1086969", "GSM1086970" ], "type": "cell type", "id": "GDS5671_4" }, { "dataset_id": "GDS5671", "description": "control", "sample_id": [ "GSM1086967", "GSM1086971", "GSM1086973", "GSM1086969" ], "type": "genotype/variation", "id": "GDS5671_5" }, { "dataset_id": "GDS5671", "description": "Notch intracellular domain expression", "sample_id": [ "GSM1086968", "GSM1086972", "GSM1086974", "GSM1086970" ], "type": "genotype/variation", "id": "GDS5671_6" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS5671", "version": 1.0, "instances": "8", "variables": 26599, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5671.tab", "compression": "gz" } ], [ [ "GDS5672.tab" ], { "title": "Anti-VEGF and Anti-Notch treatment effect on U87 glioblastoma xenograft tumors [HG-U133_Plus_2]", "description": "Analysis of U87 human xenograft tumors (in BALB/c SCID mouse host) treated with antiangiogenic agents bevacizumab (anti-VEGF) and dibenzazepine (anti-Notch). The tumors include mouse host stroma. Results, together with those from GDS5678, provide insight into molecular basis of tumor angiogenesis.", "type": "Expression profiling by array", "pubmed_id": "23871637", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "transformed count", "reference_series": "GSE39223", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5672", "description": "control", "sample_id": [ "GSM958322", "GSM958323", "GSM958324" ], "type": "agent", "id": "GDS5672_1" }, { "dataset_id": "GDS5672", "description": "bevacizumab", "sample_id": [ "GSM958328", "GSM958329", "GSM958330" ], "type": "agent", "id": "GDS5672_2" }, { "dataset_id": "GDS5672", "description": "dibenzazepine", "sample_id": [ "GSM958325", "GSM958326", "GSM958327" ], "type": "agent", "id": "GDS5672_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5672", "version": 1.0, "instances": "9", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5672.tab", "compression": "gz" } ], [ [ "GDS5673.tab" ], { "title": "Glucagon effect on hepatocytes deficient in lysine acetyltransferase 2B or WD repeat-containing protein 5", "description": "Analysis of C57BL6/J primary hepatocytes depleted of either lysine acetyltransferase 2B (KAT2B) or WD repeat-containing protein 5 (WDR5) via shRNA knockdown, then stimulated with glucagon for 90 minutes. Results provide insight into the roles of KAT2B and WDR5 in hepatic gluconeogenesis.", "type": "Expression profiling by array", "pubmed_id": "24051374", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE47179", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5673", "description": "control", "sample_id": [ "GSM1146158", "GSM1146159", "GSM1146160", "GSM1146161" ], "type": "genotype/variation", "id": "GDS5673_1" }, { "dataset_id": "GDS5673", "description": "KAT2B depletion", "sample_id": [ "GSM1146165", "GSM1146166", "GSM1146167" ], "type": "genotype/variation", "id": "GDS5673_2" }, { "dataset_id": "GDS5673", "description": "WDR5 depletion", "sample_id": [ "GSM1146162", "GSM1146163", "GSM1146164" ], "type": "genotype/variation", "id": "GDS5673_3" }, { "dataset_id": "GDS5673", "description": "control", "sample_id": [ "GSM1146158", "GSM1146159", "GSM1146162", "GSM1146165" ], "type": "agent", "id": "GDS5673_4" }, { "dataset_id": "GDS5673", "description": "glucagon", "sample_id": [ "GSM1146160", "GSM1146161", "GSM1146163", "GSM1146164", "GSM1146166", "GSM1146167" ], "type": "agent", "id": "GDS5673_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5673", "version": 1.0, "instances": "10", "variables": 25473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5673.tab", "compression": "gz" } ], [ [ "GDS5674.tab" ], { "title": "ErbB4 isoforms CYT-1 and CYT-2 overexpression effect on MCF10A mammary epithelial cells", "description": "Analysis of MCF10A cells expressing ERBB4 intracellular domain (ICD) isoforms, CYT-1 or CYT-2. ERBB4 is a member of the epidermal growth factor receptor family. MCF10A cells lack endogenous ERBB4 expression. Results provide insight into the diverse transcriptional activities of ERBB4 isoforms.", "type": "Expression profiling by array", "pubmed_id": "24829397", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE57339", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5674", "description": "control", "sample_id": [ "GSM1380132", "GSM1380126", "GSM1380131", "GSM1380125" ], "type": "genotype/variation", "id": "GDS5674_1" }, { "dataset_id": "GDS5674", "description": "CYT-1 ERBB4 isoform expression", "sample_id": [ "GSM1380134", "GSM1380128", "GSM1380133", "GSM1380127" ], "type": "genotype/variation", "id": "GDS5674_2" }, { "dataset_id": "GDS5674", "description": "CYT-2 ERBB4 isoform expression", "sample_id": [ "GSM1380136", "GSM1380130", "GSM1380135", "GSM1380129" ], "type": "genotype/variation", "id": "GDS5674_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5674", "version": 1.0, "instances": "12", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5674.tab", "compression": "gz" } ], [ [ "GDS5675.tab" ], { "title": "Histone deacetylase HDAC7 re-expression effect on pre-B cell transdifferentiation into macrophages: time course", "description": "Analysis of C10 pre-B cells transduced with a vector for HDAC7 expression then treated with \u03b2-estradiol to induce transdifferentiation into macrophages for up to 72 hr. Dysregulated HDAC activity is associated with B cell malignancies. Results provide insight into role of HDAC7 in B lymphopoiesis.", "type": "Expression profiling by array", "pubmed_id": "23696748", "platform": "GPL11180", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45141", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE36827", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5675", "description": "control", "sample_id": [ "GSM902524", "GSM902525", "GSM902526", "GSM902527", "GSM902528", "GSM902529" ], "type": "genotype/variation", "id": "GDS5675_1" }, { "dataset_id": "GDS5675", "description": "HDAC7 re-expression", "sample_id": [ "GSM902530", "GSM902531", "GSM902532", "GSM902533", "GSM902534", "GSM902535" ], "type": "genotype/variation", "id": "GDS5675_2" }, { "dataset_id": "GDS5675", "description": "control", "sample_id": [ "GSM902524", "GSM902525", "GSM902530", "GSM902531" ], "type": "agent", "id": "GDS5675_3" }, { "dataset_id": "GDS5675", "description": "\u03b2-estradiol", "sample_id": [ "GSM902526", "GSM902527", "GSM902528", "GSM902529", "GSM902532", "GSM902533", "GSM902534", "GSM902535" ], "type": "agent", "id": "GDS5675_4" }, { "dataset_id": "GDS5675", "description": "control", "sample_id": [ "GSM902530", "GSM902531", "GSM902524", "GSM902525" ], "type": "time", "id": "GDS5675_5" }, { "dataset_id": "GDS5675", "description": "48 hours", "sample_id": [ "GSM902533", "GSM902526", "GSM902527", "GSM902532" ], "type": "time", "id": "GDS5675_6" }, { "dataset_id": "GDS5675", "description": "72 hours", "sample_id": [ "GSM902534", "GSM902535", "GSM902528", "GSM902529" ], "type": "time", "id": "GDS5675_7" } ], "taxid": "10090", "genes": 31810, "aggregation_function": "mean", "name": "GDS5675", "version": 1.0, "instances": "12", "variables": 31814, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5675.tab", "compression": "gz" } ], [ [ "GDS5676.tab" ], { "title": "Mutant isocitrate dehydrogenase 1 and 2 effect on hepatoblasts grown on collagen-coated plates", "description": "Analysis of hepatoblasts expressing mutant IDH1 (R132C) and mutant IDH2 (R172K) grown on collagen-coated plates. IDH genes are frequently mutated in intrahepatic cholangiocarcinoma (IHCC). Results provide insight into molecular pathways by which IDH mutations lead to tumor formation.", "type": "Expression profiling by array", "pubmed_id": "25043045", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE57002", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5676", "description": "control vector", "sample_id": [ "GSM1372811", "GSM1372810" ], "type": "genotype/variation", "id": "GDS5676_1" }, { "dataset_id": "GDS5676", "description": "IDH2 R172K mutant", "sample_id": [ "GSM1372819", "GSM1372818" ], "type": "genotype/variation", "id": "GDS5676_2" }, { "dataset_id": "GDS5676", "description": "IDH2 wild type", "sample_id": [ "GSM1372817", "GSM1372816" ], "type": "genotype/variation", "id": "GDS5676_3" }, { "dataset_id": "GDS5676", "description": "IDH1 R132C mutant", "sample_id": [ "GSM1372815", "GSM1372814" ], "type": "genotype/variation", "id": "GDS5676_4" }, { "dataset_id": "GDS5676", "description": "IDH1 wild type", "sample_id": [ "GSM1372813", "GSM1372812" ], "type": "genotype/variation", "id": "GDS5676_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5676", "version": 1.0, "instances": "10", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5676.tab", "compression": "gz" } ], [ [ "GDS5677.tab" ], { "title": "Mutant isocitrate dehydrogenase 1 effect on hepatoblasts grown on uncoated plates", "description": "Analysis of mutant IDH1 (R132C)-expressing hepatoblasts that were grown on uncoated plates to induce hepatocyte differentiation. IDH genes are frequently mutated in intrahepatic cholangiocarcinoma (IHCC). Results provide insight into the role of IDH1 in hepatocyte differentiation.", "type": "Expression profiling by array", "pubmed_id": "25043045", "platform": "GPL8321", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE57002", "order": "none", "update_date": "Dec 11 2015", "subsets": [ { "dataset_id": "GDS5677", "description": "control vector", "sample_id": [ "GSM1372820", "GSM1372821" ], "type": "genotype/variation", "id": "GDS5677_1" }, { "dataset_id": "GDS5677", "description": "IDH1 R132C mutant", "sample_id": [ "GSM1372822", "GSM1372823" ], "type": "genotype/variation", "id": "GDS5677_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS5677", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5677.tab", "compression": "gz" } ], [ [ "GDS5678.tab" ], { "title": "Anti-VEGF and Anti-Notch treatment effect on U87 glioblastoma xenograft tumors [Mouse430_2]", "description": "Analysis of U87 human xenograft tumors (in BALB/c SCID mouse host) treated with antiangiogenic agents bevacizumab (anti-VEGF) and dibenzazepine (anti-Notch). The tumors include mouse host stroma. Results, together with those from GDS5672, provide insight into molecular basis of tumor angiogenesis.", "type": "Expression profiling by array", "pubmed_id": "23871637", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE39413", "order": "none", "update_date": "Dec 10 2015", "subsets": [ { "dataset_id": "GDS5678", "description": "control", "sample_id": [ "GSM967852", "GSM967853", "GSM967854", "GSM967855", "GSM967856" ], "type": "agent", "id": "GDS5678_1" }, { "dataset_id": "GDS5678", "description": "bevacizumab", "sample_id": [ "GSM967862", "GSM967863", "GSM967864", "GSM967865" ], "type": "agent", "id": "GDS5678_2" }, { "dataset_id": "GDS5678", "description": "dibenzazepine", "sample_id": [ "GSM967857", "GSM967858", "GSM967859", "GSM967860", "GSM967861" ], "type": "agent", "id": "GDS5678_3" } ], "taxid": "9606", "genes": 26681, "aggregation_function": "mean", "name": "GDS5678", "version": 1.0, "instances": "14", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5678.tab", "compression": "gz" } ], [ [ "GDS568.tab" ], { "title": "Erythroid differentiation: G1E model", "description": "Analysis of erythroid differentiation using G1E ER4 clone cells. Estradiol addition induces Gata-1 triggering synchronous differentiation. 30 hour time course corresponds to late burst-forming unit-erythroid stage through orthochromatic erythroblast stage.", "type": "Expression profiling by array", "pubmed_id": "15297311", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE628", "order": "ordered", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS568", "description": "no estradiol", "sample_id": [ "GSM9635", "GSM9636", "GSM9637" ], "type": "agent", "id": "GDS568_1" }, { "dataset_id": "GDS568", "description": "estradiol", "sample_id": [ "GSM9604", "GSM9638", "GSM9639", "GSM9640", "GSM9641", "GSM9642", "GSM9643", "GSM9644", "GSM9645", "GSM9646", "GSM9647", "GSM9648", "GSM9649", "GSM9650", "GSM9651" ], "type": "agent", "id": "GDS568_2" }, { "dataset_id": "GDS568", "description": "control", "sample_id": [ "GSM9635", "GSM9636", "GSM9637" ], "type": "time", "id": "GDS568_3" }, { "dataset_id": "GDS568", "description": "3 hr", "sample_id": [ "GSM9604", "GSM9638", "GSM9639" ], "type": "time", "id": "GDS568_4" }, { "dataset_id": "GDS568", "description": "7 hr", "sample_id": [ "GSM9640", "GSM9641", "GSM9642" ], "type": "time", "id": "GDS568_5" }, { "dataset_id": "GDS568", "description": "14 hr", "sample_id": [ "GSM9643", "GSM9644", "GSM9645" ], "type": "time", "id": "GDS568_6" }, { "dataset_id": "GDS568", "description": "21 hr", "sample_id": [ "GSM9646", "GSM9647", "GSM9648" ], "type": "time", "id": "GDS568_7" }, { "dataset_id": "GDS568", "description": "30 hr", "sample_id": [ "GSM9649", "GSM9650", "GSM9651" ], "type": "time", "id": "GDS568_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS568", "version": 1.0, "instances": "18", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS568.tab", "compression": "gz" } ], [ [ "GDS574.tab" ], { "title": "Renal function and dietary salt", "description": "Examination of kidney tissue from Sprague Dawley and Dahl salt sensitive (SS/Jr) rats fed 10 day diet of either 0.3% or 8.0% NaCl. Results provide insight into salt adaptation and pathogenesis of hypertension.", "type": "Expression profiling by array", "pubmed_id": "12642512", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE599", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS574", "description": "0.3 percent NaCl diet", "sample_id": [ "GSM9107", "GSM9108", "GSM9109", "GSM9113", "GSM9115", "GSM9116" ], "type": "protocol", "id": "GDS574_1" }, { "dataset_id": "GDS574", "description": "8.0 percent NaCl diet", "sample_id": [ "GSM9110", "GSM9111", "GSM9112", "GSM9117", "GSM9118" ], "type": "protocol", "id": "GDS574_2" }, { "dataset_id": "GDS574", "description": "Sprague Dawley", "sample_id": [ "GSM9107", "GSM9108", "GSM9109", "GSM9110", "GSM9111", "GSM9112" ], "type": "strain", "id": "GDS574_3" }, { "dataset_id": "GDS574", "description": "Dahl SS/Jr", "sample_id": [ "GSM9113", "GSM9115", "GSM9116", "GSM9117", "GSM9118" ], "type": "strain", "id": "GDS574_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS574", "version": 1.0, "instances": "11", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS574.tab", "compression": "gz" } ], [ [ "GDS575.tab" ], { "title": "Retinoblastoma-deficient prostate epithelial cells, and effect of serum", "description": "Comparison of retinoblastoma-deficient (Rb-/-) and control wild type prostate epithelial cell lines maintained in RPMI-1640 medium supplemented with 5% fetal bovine serum, or without serum for 48 hours.", "type": "Expression profiling by array", "pubmed_id": [ "15802019", "15867358" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE934", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS575", "description": "wild type prostate epithelial", "sample_id": [ "GSM14659", "GSM14669", "GSM14670", "GSM14671", "GSM14672" ], "type": "cell line", "id": "GDS575_1" }, { "dataset_id": "GDS575", "description": "Rb-/- prostate epithelial", "sample_id": [ "GSM14673", "GSM14674", "GSM14675", "GSM14676" ], "type": "cell line", "id": "GDS575_2" }, { "dataset_id": "GDS575", "description": "with serum", "sample_id": [ "GSM14659", "GSM14669", "GSM14670", "GSM14673", "GSM14674" ], "type": "growth protocol", "id": "GDS575_3" }, { "dataset_id": "GDS575", "description": "serum free", "sample_id": [ "GSM14671", "GSM14672", "GSM14675", "GSM14676" ], "type": "growth protocol", "id": "GDS575_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS575", "version": 1.0, "instances": "9", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS575.tab", "compression": "gz" } ], [ [ "GDS578.tab" ], { "title": "Preimplantation development", "description": "Dynamics of global gene expression changes during preimplantation development. Unfertilized eggs, fertilized egg, 2-cell embryos, 4-cell embryos, 8-cell embryos, morulae and blastocysts examined.", "type": "Expression profiling by array", "pubmed_id": "14723852", "platform": "GPL870", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "28", "value_type": "log ratio", "reference_series": "GSE936", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS578", "description": "unfertilized egg", "sample_id": [ "GSM14658", "GSM14660", "GSM14661", "GSM14662" ], "type": "development stage", "id": "GDS578_1" }, { "dataset_id": "GDS578", "description": "fertilized egg", "sample_id": [ "GSM14663", "GSM14664", "GSM14665", "GSM14666" ], "type": "development stage", "id": "GDS578_2" }, { "dataset_id": "GDS578", "description": "2-cell embryo", "sample_id": [ "GSM14667", "GSM14668", "GSM14677", "GSM14678" ], "type": "development stage", "id": "GDS578_3" }, { "dataset_id": "GDS578", "description": "4-cell embryo", "sample_id": [ "GSM14679", "GSM14680", "GSM14681", "GSM14682" ], "type": "development stage", "id": "GDS578_4" }, { "dataset_id": "GDS578", "description": "8-cell embryo", "sample_id": [ "GSM14683", "GSM14684", "GSM14685", "GSM14686" ], "type": "development stage", "id": "GDS578_5" }, { "dataset_id": "GDS578", "description": "morula", "sample_id": [ "GSM14687", "GSM14688", "GSM14689", "GSM14690" ], "type": "development stage", "id": "GDS578_6" }, { "dataset_id": "GDS578", "description": "blastocyst", "sample_id": [ "GSM14691", "GSM14692", "GSM14693", "GSM14694" ], "type": "development stage", "id": "GDS578_7" } ], "taxid": "10090", "genes": 17383, "aggregation_function": "mean", "name": "GDS578", "version": 1.0, "instances": "28", "variables": 17385, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS578.tab", "compression": "gz" } ], [ [ "GDS579.tab" ], { "title": "Zygotic gene activation", "description": "Characterization of zygotic gene activation (ZGA) and influence of maternal transcripts. Embryos cultured until 2-cell stage with inhibitors of transcription (α-amanitine), DNA replication (aphidicolin) and protein synthesis (cycloheximide).", "type": "Expression profiling by array", "pubmed_id": "14723852", "platform": "GPL870", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "36", "value_type": "log ratio", "reference_series": "GSE936", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS579", "description": "21 h early 1-cell embryo", "sample_id": [ "GSM14695", "GSM14696", "GSM14697" ], "type": "development stage", "id": "GDS579_1" }, { "dataset_id": "GDS579", "description": "32 h late 1-cell embryo", "sample_id": [ "GSM14698", "GSM14699", "GSM14700", "GSM14707", "GSM14708", "GSM14709", "GSM14716", "GSM14717", "GSM14718", "GSM14722", "GSM14723", "GSM14724" ], "type": "development stage", "id": "GDS579_2" }, { "dataset_id": "GDS579", "description": "43 h early 2-cell embryo", "sample_id": [ "GSM14701", "GSM14702", "GSM14703", "GSM14710", "GSM14711", "GSM14712", "GSM14719", "GSM14720", "GSM14721", "GSM14725", "GSM14726", "GSM14727", "GSM14728", "GSM14729", "GSM14730" ], "type": "development stage", "id": "GDS579_3" }, { "dataset_id": "GDS579", "description": "54 h late 2-cell embryo", "sample_id": [ "GSM14704", "GSM14705", "GSM14706", "GSM14713", "GSM14714", "GSM14715" ], "type": "development stage", "id": "GDS579_4" }, { "dataset_id": "GDS579", "description": "control", "sample_id": [ "GSM14695", "GSM14696", "GSM14697", "GSM14698", "GSM14699", "GSM14700", "GSM14701", "GSM14702", "GSM14703", "GSM14704", "GSM14705", "GSM14706" ], "type": "agent", "id": "GDS579_5" }, { "dataset_id": "GDS579", "description": "alpha amanitine", "sample_id": [ "GSM14707", "GSM14708", "GSM14709", "GSM14710", "GSM14711", "GSM14712", "GSM14713", "GSM14714", "GSM14715" ], "type": "agent", "id": "GDS579_6" }, { "dataset_id": "GDS579", "description": "aphidicolin", "sample_id": [ "GSM14716", "GSM14717", "GSM14718", "GSM14719", "GSM14720", "GSM14721" ], "type": "agent", "id": "GDS579_7" }, { "dataset_id": "GDS579", "description": "dimethyl sulfoxide", "sample_id": [ "GSM14722", "GSM14723", "GSM14724", "GSM14725", "GSM14726", "GSM14727" ], "type": "agent", "id": "GDS579_8" }, { "dataset_id": "GDS579", "description": "cycloheximide", "sample_id": [ "GSM14728", "GSM14729", "GSM14730" ], "type": "agent", "id": "GDS579_9" } ], "taxid": "10090", "genes": 17383, "aggregation_function": "mean", "name": "GDS579", "version": 1.0, "instances": "36", "variables": 17386, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS579.tab", "compression": "gz" } ], [ [ "GDS58.tab" ], { "title": "Allergic response to ragweed in lung (U74Bv2)", "description": "Analysis of allergic response to an immunogenic protein of ragweed pollen in lung. Determination of the temporal relationship between gene expression and airway allergen challenge.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE483", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS58", "description": "control", "sample_id": [ "GSM1235", "GSM1241", "GSM1247", "GSM1253" ], "type": "agent", "id": "GDS58_1" }, { "dataset_id": "GDS58", "description": "allergen", "sample_id": [ "GSM1271", "GSM1277" ], "type": "agent", "id": "GDS58_2" }, { "dataset_id": "GDS58", "description": "24 hour", "sample_id": [ "GSM1235", "GSM1241" ], "type": "time", "id": "GDS58_3" }, { "dataset_id": "GDS58", "description": "72 hour", "sample_id": [ "GSM1271", "GSM1277", "GSM1247", "GSM1253" ], "type": "time", "id": "GDS58_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS58", "version": 1.0, "instances": "6", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS58.tab", "compression": "gz" } ], [ [ "GDS580.tab" ], { "title": "Glomerulonephropathy", "description": "Gene expression profiling of anti-glomerular basement membrane (GBM) glomerulonephropathy model. Analysis of kidney tissue of BALB/c mice injected with anti-GBM antibody for 1, 3, 7, 11 or 16 days.", "type": "Expression profiling by array", "pubmed_id": "15496153", "platform": "GPL254", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "16281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "15", "value_type": "log ratio", "reference_series": "GSE969", "order": "ordered", "update_date": "May 10 2004", "subsets": [ { "dataset_id": "GDS580", "description": "1 day", "sample_id": [ "GSM15078", "GSM15083", "GSM15088" ], "type": "time", "id": "GDS580_1" }, { "dataset_id": "GDS580", "description": "3 days", "sample_id": [ "GSM15079", "GSM15084", "GSM15089" ], "type": "time", "id": "GDS580_2" }, { "dataset_id": "GDS580", "description": "7 days", "sample_id": [ "GSM15080", "GSM15085", "GSM15090" ], "type": "time", "id": "GDS580_3" }, { "dataset_id": "GDS580", "description": "11 days", "sample_id": [ "GSM15081", "GSM15086", "GSM15091" ], "type": "time", "id": "GDS580_4" }, { "dataset_id": "GDS580", "description": "16 days", "sample_id": [ "GSM15082", "GSM15087", "GSM15092" ], "type": "time", "id": "GDS580_5" } ], "taxid": "10090", "genes": 12611, "aggregation_function": "mean", "name": "GDS580", "version": 1.0, "instances": "15", "variables": 12613, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS580.tab", "compression": "gz" } ], [ [ "GDS5800.tab" ], { "title": "Interstitial fluid flow effect on noninvasive and invasive ERBB2-positive breast cancer cells", "description": "Analysis of non-invasive NeuN cells and invasive NeuT cells (i.e., MCF10A cells overexpressing wild-type ERBB2 or a constitutively active mutant of ERBB2, respectively) treated with IFF. Results provide insight into the molecular pathways activated by IFF in ERBB2-positive breast cancer cells.", "type": "Expression profiling by array", "pubmed_id": "25566992", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE64670", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5800", "description": "NeuT", "sample_id": [ "GSM1576692", "GSM1576693", "GSM1576694", "GSM1576695", "GSM1576696", "GSM1576697" ], "type": "cell line", "id": "GDS5800_1" }, { "dataset_id": "GDS5800", "description": "NeuN", "sample_id": [ "GSM1576698", "GSM1576699", "GSM1576700", "GSM1576701", "GSM1576702", "GSM1576703" ], "type": "cell line", "id": "GDS5800_2" }, { "dataset_id": "GDS5800", "description": "static", "sample_id": [ "GSM1576692", "GSM1576693", "GSM1576694", "GSM1576698", "GSM1576699", "GSM1576700" ], "type": "protocol", "id": "GDS5800_3" }, { "dataset_id": "GDS5800", "description": "flow", "sample_id": [ "GSM1576695", "GSM1576696", "GSM1576697", "GSM1576701", "GSM1576702", "GSM1576703" ], "type": "protocol", "id": "GDS5800_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5800", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5800.tab", "compression": "gz" } ], [ [ "GDS5801.tab" ], { "title": "Protein kinase C \u03b4 deficiency effect on breast cancer cells", "description": "Analysis of basal-like breast cancer (BC) cell lines MDA-MB-468 and BT-549 treated with protein kinase C \u03b4 (PKC\u03b4) siRNA to induce apoptosis. Results provide insight into candidate apoptosis regulators in BC cells.", "type": "Expression profiling by array", "pubmed_id": "26083392", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE55503", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5801", "description": "BT-549", "sample_id": [ "GSM1338306", "GSM1338302", "GSM1338298", "GSM1338305", "GSM1338301", "GSM1338297" ], "type": "cell line", "id": "GDS5801_1" }, { "dataset_id": "GDS5801", "description": "MDA-MB-468", "sample_id": [ "GSM1338304", "GSM1338300", "GSM1338296", "GSM1338303", "GSM1338299", "GSM1338295" ], "type": "cell line", "id": "GDS5801_2" }, { "dataset_id": "GDS5801", "description": "PKC\u03b4 siRNA", "sample_id": [ "GSM1338304", "GSM1338300", "GSM1338296", "GSM1338306", "GSM1338302", "GSM1338298" ], "type": "protocol", "id": "GDS5801_3" }, { "dataset_id": "GDS5801", "description": "control", "sample_id": [ "GSM1338303", "GSM1338299", "GSM1338295", "GSM1338305", "GSM1338301", "GSM1338297" ], "type": "protocol", "id": "GDS5801_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5801", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5801.tab", "compression": "gz" } ], [ [ "GDS5802.tab" ], { "title": "Bone marrow mesenchymal stromal cells from primary myelofibrosis patients", "description": "Analysis of bone marrow mesenchymal stromal cells from primary myelofibrosis (PMF) patients. PMF is a Philadelphia chromosome-negative, chronic myeloproliferative neoplasm. Results provide insight into molecular mechanisms underlying myelofibrosis pathology.", "type": "Expression profiling by array", "pubmed_id": "25840601", "platform": "GPL4133", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45220", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE44426", "order": "none", "update_date": "Jun 27 2016", "subsets": [ { "dataset_id": "GDS5802", "description": "control", "sample_id": [ "GSM1084994", "GSM1084995", "GSM1084996", "GSM1084997", "GSM1084998", "GSM1084999" ], "type": "disease state", "id": "GDS5802_1" }, { "dataset_id": "GDS5802", "description": "primary myelofibrosis", "sample_id": [ "GSM1085000", "GSM1085001", "GSM1085002", "GSM1085003", "GSM1085004", "GSM1085005" ], "type": "disease state", "id": "GDS5802_2" } ], "taxid": "9606", "genes": 29581, "aggregation_function": "mean", "name": "GDS5802", "version": 1.0, "instances": "12", "variables": 29583, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5802.tab", "compression": "gz" } ], [ [ "GDS5803.tab" ], { "title": "Radioactive iodine effect on normal thyroid: dose response", "description": "Analysis of thyroid from normal BALB/c adults 24 hours after injection in the tail vein with 13, 130, or 260 kBq of radioactive iodine (131I). The absorbed doses to thyroid were 0.85, 8.5, or 17 Gy. Results provide insight into dose-specific molecular responses of thyroid after 131I administration.", "type": "Expression profiling by array", "pubmed_id": "25496975", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE54594", "order": "none", "update_date": "Jun 27 2016", "subsets": [ { "dataset_id": "GDS5803", "description": "0 Gy", "sample_id": [ "GSM1319643" ], "type": "dose", "id": "GDS5803_1" }, { "dataset_id": "GDS5803", "description": "0.85 Gy", "sample_id": [ "GSM1319640" ], "type": "dose", "id": "GDS5803_2" }, { "dataset_id": "GDS5803", "description": "8.5 Gy", "sample_id": [ "GSM1319641" ], "type": "dose", "id": "GDS5803_3" }, { "dataset_id": "GDS5803", "description": "17 Gy", "sample_id": [ "GSM1319642" ], "type": "dose", "id": "GDS5803_4" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5803", "version": 1.0, "instances": "4", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5803.tab", "compression": "gz" } ], [ [ "GDS5804.tab" ], { "title": "PI3K/mTOR Inhibitor NVP-BEZ235 and taxotere effects on prostate cancer xenograft tumors", "description": "Analysis of DU145 xenograft tumors in NOD/SCID mice treated with NVP-BEZ235, taxotere, or both. NVP-BEZ235 targets prostate cancer progenitor cells. Taxotere targets the bulk tumor. Results provide insight into potential biomarkers associated with cancer stem cells in these xenograft tumors.", "type": "Expression profiling by array", "pubmed_id": "25670168", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE49232", "order": "none", "update_date": "Jun 27 2016", "subsets": [ { "dataset_id": "GDS5804", "description": "vehicle", "sample_id": [ "GSM1195690" ], "type": "agent", "id": "GDS5804_1" }, { "dataset_id": "GDS5804", "description": "NVP-BEZ235", "sample_id": [ "GSM1195692" ], "type": "agent", "id": "GDS5804_2" }, { "dataset_id": "GDS5804", "description": "taxotere", "sample_id": [ "GSM1195691" ], "type": "agent", "id": "GDS5804_3" }, { "dataset_id": "GDS5804", "description": "taxotere + NVP-BEZ235", "sample_id": [ "GSM1195693" ], "type": "agent", "id": "GDS5804_4" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5804", "version": 1.0, "instances": "4", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5804.tab", "compression": "gz" } ], [ [ "GDS5805.tab" ], { "title": "Peptidyl-prolyl cis/trans isomerase Pin1 deficiency effect on prostate cancer cells", "description": "Analysis of prostate cancer (PC) cell lines LNCap (androgen-dependent) and DU145 (androgen-independent) following siRNA-mediated knockdown of Peptidyl-prolyl cis/trans isomerase Pin1. Results provide insight into molecular mechanisms underlying Pin1 modulation of both PC two cell lines.", "type": "Expression profiling by array", "pubmed_id": "26039047", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE67457", "order": "none", "update_date": "Jun 27 2016", "subsets": [ { "dataset_id": "GDS5805", "description": "control", "sample_id": [ "GSM1647378", "GSM1647381" ], "type": "protocol", "id": "GDS5805_1" }, { "dataset_id": "GDS5805", "description": "Pin1 siRNA-1", "sample_id": [ "GSM1647379", "GSM1647382" ], "type": "protocol", "id": "GDS5805_2" }, { "dataset_id": "GDS5805", "description": "Pin1 siRNA-2", "sample_id": [ "GSM1647380", "GSM1647383" ], "type": "protocol", "id": "GDS5805_3" }, { "dataset_id": "GDS5805", "description": "DU145", "sample_id": [ "GSM1647381", "GSM1647382", "GSM1647383" ], "type": "cell line", "id": "GDS5805_4" }, { "dataset_id": "GDS5805", "description": "LNCaP", "sample_id": [ "GSM1647378", "GSM1647379", "GSM1647380" ], "type": "cell line", "id": "GDS5805_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5805", "version": 1.0, "instances": "6", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5805.tab", "compression": "gz" } ], [ [ "GDS5806.tab" ], { "title": "FLT3/ITD-SmoM2 acute myeloid leukemia model: sorted bone marrow cells", "description": "Analysis of KSL and GMP cells isolated from bone marrow of Flt3/ITD-SmoM2 transgenics at around 3 months of age when they developed leukemia. Wild-type and FLT3/ITD littermates of the FLT3/ITD-SmoM2 animals were also examined. Results provide insight into the role of SmoM2 in leukemic progression.", "type": "Expression profiling by array", "pubmed_id": "26062848", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE67134", "order": "none", "update_date": "Jun 27 2016", "subsets": [ { "dataset_id": "GDS5806", "description": "wild type", "sample_id": [ "GSM1639868", "GSM1639867" ], "type": "genotype/variation", "id": "GDS5806_1" }, { "dataset_id": "GDS5806", "description": "FLT3/ITD", "sample_id": [ "GSM1639870", "GSM1639869" ], "type": "genotype/variation", "id": "GDS5806_2" }, { "dataset_id": "GDS5806", "description": "FLT3/ITD-SmoM2", "sample_id": [ "GSM1639872", "GSM1639871" ], "type": "genotype/variation", "id": "GDS5806_3" }, { "dataset_id": "GDS5806", "description": "granulocyte/monocyte progenitors", "sample_id": [ "GSM1639867", "GSM1639871", "GSM1639869" ], "type": "cell type", "id": "GDS5806_4" }, { "dataset_id": "GDS5806", "description": "KSL hematopoietic stem progenitors", "sample_id": [ "GSM1639868", "GSM1639872", "GSM1639870" ], "type": "cell type", "id": "GDS5806_5" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5806", "version": 1.0, "instances": "6", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5806.tab", "compression": "gz" } ], [ [ "GDS5807.tab" ], { "title": "Snail transcription factor/ER\u03b1 ligand-binding region chimeric protein effect on embryonic stem cells: time course", "description": "Analysis of ESC line E14 expressing 4-hydroxytamoxifen (4-OHT)-inducible Snai1-ER at various time points of induction with 4-OHT. Snai1 (Snail homolog 1) is a member of the Snail family of zinc finger transcription factors. Results provide insight into the role of Snai1 in ESC differentiation.", "type": "Expression profiling by array", "pubmed_id": [ "25504116", "26484184" ], "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE57854", "order": "ordered", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5807", "description": "control", "sample_id": [ "GSM1395157" ], "type": "agent", "id": "GDS5807_1" }, { "dataset_id": "GDS5807", "description": "4-OHT", "sample_id": [ "GSM1395158", "GSM1395159", "GSM1395160", "GSM1395161", "GSM1395162" ], "type": "agent", "id": "GDS5807_2" }, { "dataset_id": "GDS5807", "description": "0 hour", "sample_id": [ "GSM1395157" ], "type": "time", "id": "GDS5807_3" }, { "dataset_id": "GDS5807", "description": "2 hours", "sample_id": [ "GSM1395158" ], "type": "time", "id": "GDS5807_4" }, { "dataset_id": "GDS5807", "description": "4 hours", "sample_id": [ "GSM1395159" ], "type": "time", "id": "GDS5807_5" }, { "dataset_id": "GDS5807", "description": "8 hours", "sample_id": [ "GSM1395160" ], "type": "time", "id": "GDS5807_6" }, { "dataset_id": "GDS5807", "description": "12 hours", "sample_id": [ "GSM1395161" ], "type": "time", "id": "GDS5807_7" }, { "dataset_id": "GDS5807", "description": "24 hours", "sample_id": [ "GSM1395162" ], "type": "time", "id": "GDS5807_8" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5807", "version": 1.0, "instances": "6", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5807.tab", "compression": "gz" } ], [ [ "GDS5809.tab" ], { "title": "Anti-leukemia drug etoposide effect on ecotropic viral integration site 1-overexpressing myeloid cells", "description": "Analysis of myeloid cell line U937 overexpressing ecotropic viral integration site 1 (EVI1) and cultured in the presence of antileukemic drug etoposide. Results provide insight into molecular mechanisms through which EVI1 confers resistance to drugs used in myeloid leukemia therapy.", "type": "Expression profiling by array", "pubmed_id": "23457546", "platform": "GPL11532", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE66660", "order": "none", "update_date": "Jun 28 2016", "subsets": [ { "dataset_id": "GDS5809", "description": "control", "sample_id": [ "GSM1627265", "GSM1627261", "GSM1627266", "GSM1627262" ], "type": "protocol", "id": "GDS5809_1" }, { "dataset_id": "GDS5809", "description": "EVI1 overexpression", "sample_id": [ "GSM1627267", "GSM1627263", "GSM1627268", "GSM1627264" ], "type": "protocol", "id": "GDS5809_2" }, { "dataset_id": "GDS5809", "description": "etoposide", "sample_id": [ "GSM1627263", "GSM1627267", "GSM1627261", "GSM1627265" ], "type": "agent", "id": "GDS5809_3" }, { "dataset_id": "GDS5809", "description": "untreated", "sample_id": [ "GSM1627264", "GSM1627268", "GSM1627262", "GSM1627266" ], "type": "agent", "id": "GDS5809_4" } ], "taxid": "9606", "genes": 26596, "aggregation_function": "mean", "name": "GDS5809", "version": 1.0, "instances": "8", "variables": 26599, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5809.tab", "compression": "gz" } ], [ [ "GDS5810.tab" ], { "title": "Hypoxia effect on von Hippel Lindau-overexpressing renal cell carcinoma cells", "description": "Analysis of renal cell carcinoma (RCC) 786-O cells transfected with von Hippel Lindau (VHL)-overexpression vector and cultured under hypoxia conditions (1% O2) for 24 hours. Results provide insight into overlap and differences of VHL- and hypoxia-dependent molecular alterations in RCC.", "type": "Expression profiling by array", "pubmed_id": "25890500", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE65168", "order": "none", "update_date": "Jun 28 2016", "subsets": [ { "dataset_id": "GDS5810", "description": "control", "sample_id": [ "GSM1588482", "GSM1588486", "GSM1588481", "GSM1588485" ], "type": "protocol", "id": "GDS5810_1" }, { "dataset_id": "GDS5810", "description": "VHL transfection", "sample_id": [ "GSM1588484", "GSM1588488", "GSM1588483", "GSM1588487" ], "type": "protocol", "id": "GDS5810_2" }, { "dataset_id": "GDS5810", "description": "normoxia", "sample_id": [ "GSM1588483", "GSM1588487", "GSM1588481", "GSM1588485" ], "type": "stress", "id": "GDS5810_3" }, { "dataset_id": "GDS5810", "description": "hypoxia", "sample_id": [ "GSM1588482", "GSM1588486", "GSM1588484", "GSM1588488" ], "type": "stress", "id": "GDS5810_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5810", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5810.tab", "compression": "gz" } ], [ [ "GDS5811.tab" ], { "title": "TGF\u03b21 effect on gingival fibroblasts pretreated with TGF\u03b2-associated kinase 1 inhibitor 5Z-7-Oxozeanol", "description": "Analysis of cultured gingival fibroblasts pre-treated with TGF\u03b2-associated kinase 1 (TAK1) inhibitor (5Z)-7-Oxozeanol for 45 min prior to treatment with TGF\u03b21. Results provide insight into the extent to which TAK1 mediates fibroproliferative responses in gingival fibroblasts in response to TGF\u03b21.", "type": "Expression profiling by array", "pubmed_id": "25927238", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE65069", "order": "none", "update_date": "Jun 28 2016", "subsets": [ { "dataset_id": "GDS5811", "description": "control", "sample_id": [ "GSM1586726", "GSM1586722", "GSM1586724", "GSM1586720" ], "type": "protocol", "id": "GDS5811_1" }, { "dataset_id": "GDS5811", "description": "5Z-7-Oxozeanol pretreatment", "sample_id": [ "GSM1586727", "GSM1586723", "GSM1586725", "GSM1586721" ], "type": "protocol", "id": "GDS5811_2" }, { "dataset_id": "GDS5811", "description": "control", "sample_id": [ "GSM1586725", "GSM1586721", "GSM1586724", "GSM1586720" ], "type": "agent", "id": "GDS5811_3" }, { "dataset_id": "GDS5811", "description": "TGF\u03b21", "sample_id": [ "GSM1586726", "GSM1586722", "GSM1586727", "GSM1586723" ], "type": "agent", "id": "GDS5811_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5811", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5811.tab", "compression": "gz" } ], [ [ "GDS5812.tab" ], { "title": "Staphylococcal alpha-toxin effect on airway epithelial cells", "description": "Analysis of bronchial epithelial cell lines 16HBE14o- (Hla-susceptible) and S9 (Hla-resistant) treated with S. aureus recombinant alpha-toxin (rHla) for 2 hrs. Results provide insight into molecular mechanisms underlying cell type-specific responses of airway epithelial cells to alpha-toxin.", "type": "Expression profiling by array", "pubmed_id": "25816343", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE65018", "order": "none", "update_date": "Jun 28 2016", "subsets": [ { "dataset_id": "GDS5812", "description": "S9 (Hla-resistant)", "sample_id": [ "GSM1585916", "GSM1585917", "GSM1585918", "GSM1585919" ], "type": "cell line", "id": "GDS5812_1" }, { "dataset_id": "GDS5812", "description": "16HBE14o- (Hla-susceptible)", "sample_id": [ "GSM1585920", "GSM1585921", "GSM1585922", "GSM1585923" ], "type": "cell line", "id": "GDS5812_2" }, { "dataset_id": "GDS5812", "description": "control", "sample_id": [ "GSM1585916", "GSM1585917", "GSM1585920", "GSM1585921" ], "type": "agent", "id": "GDS5812_3" }, { "dataset_id": "GDS5812", "description": "alpha-toxin", "sample_id": [ "GSM1585918", "GSM1585919", "GSM1585922", "GSM1585923" ], "type": "agent", "id": "GDS5812_4" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5812", "version": 1.0, "instances": "8", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5812.tab", "compression": "gz" } ], [ [ "GDS5813.tab" ], { "title": "Bone morphogenetic protein 4 and forskolin effect on embryonic AGM VE-cadherin+ cells", "description": "Analysis of vascular endothelial (VE)-cadherin+ cells isolated from aorta-gonad-mesonephros (AGM) region of E11.5 embryos then treated with bone morphogenetic protein (BMP) 4, adenylyl cyclase activator forskolin, or both. Results provide insight into the role of BMP signaling in AGM hematopoiesis.", "type": "Expression profiling by array", "pubmed_id": "25870201", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE62517", "order": "none", "update_date": "Jun 28 2016", "subsets": [ { "dataset_id": "GDS5813", "description": "DMSO", "sample_id": [ "GSM1528126", "GSM1528130" ], "type": "agent", "id": "GDS5813_1" }, { "dataset_id": "GDS5813", "description": "forskolin", "sample_id": [ "GSM1528127", "GSM1528131" ], "type": "agent", "id": "GDS5813_2" }, { "dataset_id": "GDS5813", "description": "bone morphogenetic protein 4", "sample_id": [ "GSM1528128", "GSM1528132" ], "type": "agent", "id": "GDS5813_3" }, { "dataset_id": "GDS5813", "description": "bone morphogenetic protein 4 + forskolin", "sample_id": [ "GSM1528129", "GSM1528133" ], "type": "agent", "id": "GDS5813_4" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS5813", "version": 1.0, "instances": "8", "variables": 26683, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5813.tab", "compression": "gz" } ], [ [ "GDS5814.tab" ], { "title": "Nitrosative stress effect on activator protein 1-deficient fission yeast", "description": "Analysis of activator protein 1 (Pap1)-deficient 972h- strain exposed to the nitric oxide donor compound detaNONOate. Pap1 is required to combat nitrosative stress. Results provide insight into molecular mechanisms underlying the nitrosative stress response.", "type": "Expression profiling by array", "pubmed_id": "25556969", "platform": "GPL2529", "platform_organism": [ "Schizosaccharomyces pombe", "Saccharomyces cerevisiae" ], "platform_technology_type": "in situ oligonucleotide", "feature_count": "10928", "sample_organism": "Schizosaccharomyces pombe", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "transformed count", "reference_series": "GSE50899", "order": "none", "update_date": "Jun 29 2016", "subsets": [ { "dataset_id": "GDS5814", "description": "wild type", "sample_id": [ "GSM1232160", "GSM1232161", "GSM1232162", "GSM1232163" ], "type": "genotype/variation", "id": "GDS5814_1" }, { "dataset_id": "GDS5814", "description": "pap1 deletion mutant", "sample_id": [ "GSM1232164", "GSM1232165", "GSM1232166", "GSM1232167" ], "type": "genotype/variation", "id": "GDS5814_2" }, { "dataset_id": "GDS5814", "description": "control", "sample_id": [ "GSM1232160", "GSM1232161", "GSM1232164", "GSM1232165" ], "type": "stress", "id": "GDS5814_3" }, { "dataset_id": "GDS5814", "description": "nitrosative stress", "sample_id": [ "GSM1232162", "GSM1232163", "GSM1232166", "GSM1232167" ], "type": "stress", "id": "GDS5814_4" } ], "taxid": "4896", "genes": 10623, "aggregation_function": "mean", "name": "GDS5814", "version": 1.0, "instances": "8", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5814.tab", "compression": "gz" } ], [ [ "GDS5815.tab" ], { "title": "Sunitinib effect on renal cancer xenograft tumors", "description": "Analysis of Kyoto University Renal Cancer (KURC) xenograft tumor models, KURC1, KURC2, KURC3, treated with sunitinib, a small molecule inhibitor of receptor tyrosine kinases that is used to treat RC. Results provide insight into molecular mechanisms underlying acquired sunitinib resistance in RC.", "type": "Expression profiling by array", "pubmed_id": "26114873", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE66346", "order": "none", "update_date": "Jun 29 2016", "subsets": [ { "dataset_id": "GDS5815", "description": "xenograft model KURC1", "sample_id": [ "GSM1620057", "GSM1620058", "GSM1620059", "GSM1620060", "GSM1620061" ], "type": "individual", "id": "GDS5815_1" }, { "dataset_id": "GDS5815", "description": "xenograft model KURC2", "sample_id": [ "GSM1620062", "GSM1620063" ], "type": "individual", "id": "GDS5815_2" }, { "dataset_id": "GDS5815", "description": "xenograft model KURC3", "sample_id": [ "GSM1620064", "GSM1620065" ], "type": "individual", "id": "GDS5815_3" }, { "dataset_id": "GDS5815", "description": "vehicle", "sample_id": [ "GSM1620057", "GSM1620058", "GSM1620062", "GSM1620064" ], "type": "agent", "id": "GDS5815_4" }, { "dataset_id": "GDS5815", "description": "sunitinib", "sample_id": [ "GSM1620059", "GSM1620060", "GSM1620061", "GSM1620063", "GSM1620065" ], "type": "agent", "id": "GDS5815_5" }, { "dataset_id": "GDS5815", "description": "control", "sample_id": [ "GSM1620057", "GSM1620058", "GSM1620062", "GSM1620064" ], "type": "disease state", "id": "GDS5815_6" }, { "dataset_id": "GDS5815", "description": "sunitinib-treated resistant status", "sample_id": [ "GSM1620060", "GSM1620061", "GSM1620065" ], "type": "disease state", "id": "GDS5815_7" }, { "dataset_id": "GDS5815", "description": "sunitinib-treated sensitive status", "sample_id": [ "GSM1620059", "GSM1620063" ], "type": "disease state", "id": "GDS5815_8" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5815", "version": 1.0, "instances": "9", "variables": 26807, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5815.tab", "compression": "gz" } ], [ [ "GDS5816.tab" ], { "title": "Methyltransferase EZH2 inhibition effect on ARID1A mutated ovarian clear cell cancer cell line", "description": "Analysis of ARID1A-mutated OVISE ovarian clear cell carcinoma (OCCC) cells restored with wild-type ARID1A or treated with GSK126, an inhibitor of epigenetic regulator EZH2. Epigenetic modifier ARID1A is often mutated in OCCC. Results provide insight into the role of epigenetic mechanisms in OCCC.", "type": "Expression profiling by array", "pubmed_id": "25686104", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE54979", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5816", "description": "control", "sample_id": [ "GSM1327414", "GSM1327415", "GSM1327416" ], "type": "genotype/variation", "id": "GDS5816_1" }, { "dataset_id": "GDS5816", "description": "ARID1A restored", "sample_id": [ "GSM1327417", "GSM1327418", "GSM1327419" ], "type": "genotype/variation", "id": "GDS5816_2" }, { "dataset_id": "GDS5816", "description": "EZH2 inhibited", "sample_id": [ "GSM1327420", "GSM1327421", "GSM1327422" ], "type": "genotype/variation", "id": "GDS5816_3" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5816", "version": 1.0, "instances": "9", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5816.tab", "compression": "gz" } ], [ [ "GDS5817.tab" ], { "title": "Interleukin 17A effect on monocyte-derived dendritic cells", "description": "Analysis of in vitro-generated dendritic cells (DCs) cultured with interleukin 17A (IL-17A) in the absence or presence of interferon-\u03b3. IL-17A is involved in chronic inflammatory diseases. Results provide insight into the impact of IL-17A on DCs and the role of these DCs in inflammatory disease.", "type": "Expression profiling by array", "pubmed_id": "25833686", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE53163", "order": "none", "update_date": "Jul 01 2016", "subsets": [ { "dataset_id": "GDS5817", "description": "untreated", "sample_id": [ "GSM1283274", "GSM1283275", "GSM1283276", "GSM1283277" ], "type": "protocol", "id": "GDS5817_1" }, { "dataset_id": "GDS5817", "description": "IL-17A", "sample_id": [ "GSM1283278", "GSM1283279" ], "type": "protocol", "id": "GDS5817_2" }, { "dataset_id": "GDS5817", "description": "IL-17A + IFN-g", "sample_id": [ "GSM1283280", "GSM1283281", "GSM1283282" ], "type": "protocol", "id": "GDS5817_3" }, { "dataset_id": "GDS5817", "description": "0 days", "sample_id": [ "GSM1283274", "GSM1283275", "GSM1283276", "GSM1283277" ], "type": "time", "id": "GDS5817_4" }, { "dataset_id": "GDS5817", "description": "12 days", "sample_id": [ "GSM1283278", "GSM1283279", "GSM1283280", "GSM1283281", "GSM1283282" ], "type": "time", "id": "GDS5817_5" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5817", "version": 1.0, "instances": "9", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5817.tab", "compression": "gz" } ], [ [ "GDS5818.tab" ], { "title": "Normal liver developmental stages: embryonic and postnatal", "description": "Analysis of hepatoblasts, immature hepatocytes and hepatocytes from livers at different developmental timepoints (embryonic day 14, embryonic day 18, post-natal day 5, post-natal day 56). Results provide insight into molecular mechanisms underlying normal liver development.", "type": "Expression profiling by array", "pubmed_id": "25738607", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log2 ratio", "reference_series": "GSE65063", "order": "none", "update_date": "Jul 01 2016", "subsets": [ { "dataset_id": "GDS5818", "description": "embryonic", "sample_id": [ "GSM1586625", "GSM1586626", "GSM1586627", "GSM1586628", "GSM1586629", "GSM1586630" ], "type": "development stage", "id": "GDS5818_1" }, { "dataset_id": "GDS5818", "description": "postnatal", "sample_id": [ "GSM1586631", "GSM1586632", "GSM1586633", "GSM1586634", "GSM1586635" ], "type": "development stage", "id": "GDS5818_2" }, { "dataset_id": "GDS5818", "description": "E14", "sample_id": [ "GSM1586625", "GSM1586626", "GSM1586627" ], "type": "age", "id": "GDS5818_3" }, { "dataset_id": "GDS5818", "description": "E18", "sample_id": [ "GSM1586628", "GSM1586629", "GSM1586630" ], "type": "age", "id": "GDS5818_4" }, { "dataset_id": "GDS5818", "description": "P5", "sample_id": [ "GSM1586631", "GSM1586632" ], "type": "age", "id": "GDS5818_5" }, { "dataset_id": "GDS5818", "description": "P56", "sample_id": [ "GSM1586633", "GSM1586634", "GSM1586635" ], "type": "age", "id": "GDS5818_6" }, { "dataset_id": "GDS5818", "description": "hepatoblast", "sample_id": [ "GSM1586625", "GSM1586626", "GSM1586627" ], "type": "cell type", "id": "GDS5818_7" }, { "dataset_id": "GDS5818", "description": "immature hepatocyte", "sample_id": [ "GSM1586628", "GSM1586629", "GSM1586630" ], "type": "cell type", "id": "GDS5818_8" }, { "dataset_id": "GDS5818", "description": "hepatocyte", "sample_id": [ "GSM1586631", "GSM1586632", "GSM1586633", "GSM1586634", "GSM1586635" ], "type": "cell type", "id": "GDS5818_9" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS5818", "version": 1.0, "instances": "11", "variables": 27551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5818.tab", "compression": "gz" } ], [ [ "GDS5819.tab" ], { "title": "Metastatic breast cancer and sepsis: monocytes", "description": "Analysis of the total population of monocytes from patients with metastatic breast cancer (MBC), sepsis, or tuberculosis. Results provide insight into molecular similarities between monocytes from MBC patients and reprogrammed immunosuppressive monocytes from sepsis patients.", "type": "Expression profiling by array", "pubmed_id": "25992611", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE65517", "order": "none", "update_date": "Jul 27 2016", "subsets": [ { "dataset_id": "GDS5819", "description": "metastatic breast cancer", "sample_id": [ "GSM1599177", "GSM1599178", "GSM1599179", "GSM1599180" ], "type": "disease state", "id": "GDS5819_1" }, { "dataset_id": "GDS5819", "description": "healthy control", "sample_id": [ "GSM1599181", "GSM1599182", "GSM1599183" ], "type": "disease state", "id": "GDS5819_2" }, { "dataset_id": "GDS5819", "description": "gram-negative sepsis", "sample_id": [ "GSM1599184", "GSM1599185", "GSM1599186" ], "type": "disease state", "id": "GDS5819_3" }, { "dataset_id": "GDS5819", "description": "tuberculosis", "sample_id": [ "GSM1599187", "GSM1599188", "GSM1599189" ], "type": "disease state", "id": "GDS5819_4" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS5819", "version": 1.0, "instances": "13", "variables": 37608, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5819.tab", "compression": "gz" } ], [ [ "GDS582.tab" ], { "title": "Aging and oxidative stress in fly heads", "description": "Analysis of effect of aging and oxidative stress in male w1118 fly heads. Aging examined using young (3 day) and adult (47 day) flies. Oxidative stress examined using sucrose-fed and 15 mM paraquat-fed flies.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE6430", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS582", "description": "control", "sample_id": [ "GSM12770", "GSM12772" ], "type": "stress", "id": "GDS582_1" }, { "dataset_id": "GDS582", "description": "paraquat", "sample_id": [ "GSM12773" ], "type": "stress", "id": "GDS582_2" }, { "dataset_id": "GDS582", "description": "3 day", "sample_id": [ "GSM12770", "GSM12773" ], "type": "age", "id": "GDS582_3" }, { "dataset_id": "GDS582", "description": "47 day", "sample_id": [ "GSM12772" ], "type": "age", "id": "GDS582_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS582", "version": 1.0, "instances": "3", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS582.tab", "compression": "gz" } ], [ [ "GDS5820.tab" ], { "title": "\u03b1SMA+ myofibroblast early depletion effect on pancreatic ductal adenocarcinoma model", "description": "Analysis of pancreatic ductal adenocarcinoma (PDAC) tumors from PKT; \u03b1SMA-tk+ transgenics injected daily with ganciclovir at 4 to 4.5 weeks of age for 14 days or less to selectively deplete \u03b1SMA+ myofibroblasts. Results provide insight into the role of \u03b1SMA+ myofibroblasts in early-stage PDAC.", "type": "Expression profiling by array", "pubmed_id": "24856586", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE52812", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5820", "description": "control", "sample_id": [ "GSM1276593", "GSM1276594", "GSM1276595" ], "type": "protocol", "id": "GDS5820_1" }, { "dataset_id": "GDS5820", "description": "myofibroblast depletion", "sample_id": [ "GSM1276596", "GSM1276597", "GSM1276598" ], "type": "protocol", "id": "GDS5820_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5820", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5820.tab", "compression": "gz" } ], [ [ "GDS5821.tab" ], { "title": "\u03b1SMA+ myofibroblast late depletion effect on pancreatic ductal adenocarcinoma model", "description": "Analysis of pancreatic ductal adenocarcinoma (PDAC) tumors from PKT; \u03b1SMA-tk+ transgenics injected daily with ganciclovir at 6 weeks of age for 10 days or less to selectively deplete \u03b1SMA+ myofibroblasts. Results provide insight into the role of \u03b1SMA+ myofibroblasts in late-stage PDAC.", "type": "Expression profiling by array", "pubmed_id": "24856586", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE52812", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5821", "description": "control", "sample_id": [ "GSM1276599", "GSM1276600", "GSM1276601" ], "type": "protocol", "id": "GDS5821_1" }, { "dataset_id": "GDS5821", "description": "myofibroblast depletion", "sample_id": [ "GSM1276602", "GSM1276603", "GSM1276604" ], "type": "protocol", "id": "GDS5821_2" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5821", "version": 1.0, "instances": "6", "variables": 28106, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5821.tab", "compression": "gz" } ], [ [ "GDS5822.tab" ], { "title": "Anti-CTLA-4 immunotherapy effect on \u03b1SMA+ myofibroblast late-depleted pancreatic ductal adenocarcinoma model", "description": "Analysis of pancreatic ductal adenocarcinoma (PDAC) tumors from PKT; \u03b1SMA-tk+ transgenics injected daily with ganciclovir at 6 weeks of age for 10 days or less to deplete \u03b1SMA+ myofibroblasts and treated with anti-CTLA4. Results provide insight into molecular basis of anti-CTLA4 therapy in PDAC.", "type": "Expression profiling by array", "pubmed_id": "24856586", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE52812", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5822", "description": "control", "sample_id": [ "GSM1276599", "GSM1276600", "GSM1276601" ], "type": "protocol", "id": "GDS5822_1" }, { "dataset_id": "GDS5822", "description": "myofibroblast depletion", "sample_id": [ "GSM1303942", "GSM1303941", "GSM1303940", "GSM1276604", "GSM1276603", "GSM1276602" ], "type": "protocol", "id": "GDS5822_2" }, { "dataset_id": "GDS5822", "description": "untreated", "sample_id": [ "GSM1276601", "GSM1276600", "GSM1276599", "GSM1276604", "GSM1276603", "GSM1276602" ], "type": "agent", "id": "GDS5822_3" }, { "dataset_id": "GDS5822", "description": "anti-CTLA4 antibody", "sample_id": [ "GSM1303942", "GSM1303941", "GSM1303940" ], "type": "agent", "id": "GDS5822_4" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS5822", "version": 1.0, "instances": "9", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5822.tab", "compression": "gz" } ], [ [ "GDS5824.tab" ], { "title": "Short-term high fat diet effect on epididymal adipose fractions: time course", "description": "Analysis of primary adipocytes from epididymis of C57BL/6J males fed a 60% high fat diet (HFD) for up to 7 days to induce obesity. Results provide insight into the molecular mechanisms underlying insulin resistance in adipose tissues during early obesity.", "type": "Expression profiling by array", "pubmed_id": "25733684", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE65557", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5824", "description": "control", "sample_id": [ "GSM1600045", "GSM1600046", "GSM1600047", "GSM1600054", "GSM1600055", "GSM1600056" ], "type": "protocol", "id": "GDS5824_1" }, { "dataset_id": "GDS5824", "description": "high fat diet", "sample_id": [ "GSM1600048", "GSM1600049", "GSM1600050", "GSM1600051", "GSM1600052", "GSM1600053", "GSM1600057", "GSM1600058", "GSM1600059", "GSM1600060", "GSM1600061", "GSM1600062" ], "type": "protocol", "id": "GDS5824_2" }, { "dataset_id": "GDS5824", "description": "0 days", "sample_id": [ "GSM1600045", "GSM1600046", "GSM1600047", "GSM1600054", "GSM1600055", "GSM1600056" ], "type": "time", "id": "GDS5824_3" }, { "dataset_id": "GDS5824", "description": "3 days", "sample_id": [ "GSM1600048", "GSM1600049", "GSM1600050", "GSM1600057", "GSM1600058", "GSM1600059" ], "type": "time", "id": "GDS5824_4" }, { "dataset_id": "GDS5824", "description": "7 days", "sample_id": [ "GSM1600060", "GSM1600061", "GSM1600062", "GSM1600051", "GSM1600052", "GSM1600053" ], "type": "time", "id": "GDS5824_5" }, { "dataset_id": "GDS5824", "description": "adipocyte fraction", "sample_id": [ "GSM1600048", "GSM1600049", "GSM1600050", "GSM1600051", "GSM1600052", "GSM1600053", "GSM1600045", "GSM1600046", "GSM1600047" ], "type": "tissue", "id": "GDS5824_6" }, { "dataset_id": "GDS5824", "description": "stromal vascular fraction", "sample_id": [ "GSM1600057", "GSM1600058", "GSM1600059", "GSM1600060", "GSM1600061", "GSM1600062", "GSM1600054", "GSM1600055", "GSM1600056" ], "type": "tissue", "id": "GDS5824_7" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5824", "version": 1.0, "instances": "18", "variables": 25474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5824.tab", "compression": "gz" } ], [ [ "GDS5825.tab" ], { "title": "Interleukin-1\u03b1 deficiency effect on injured spinal cord", "description": "Analysis of spinal cord segment from interleukin (IL)-1\u03b1 -/- and IL-1\u03b2 -/- C57BL/6 adults 24 hrs after spinal cord injury (SCI). IL-1\u03b1 and IL-1\u03b2 belong to a family of cytokines playing a key role in neurodegeneration. Results provide insight into the role of IL-1\u03b1 in the neuropathology of SCI.", "type": "Expression profiling by array", "pubmed_id": "26224856", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE70302", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5825", "description": "wild type", "sample_id": [ "GSM1723397", "GSM1723398", "GSM1723399", "GSM1723400" ], "type": "genotype/variation", "id": "GDS5825_1" }, { "dataset_id": "GDS5825", "description": "interleukin-1\u03b1 -/- knockout", "sample_id": [ "GSM1723401", "GSM1723402", "GSM1723403", "GSM1723404" ], "type": "genotype/variation", "id": "GDS5825_2" }, { "dataset_id": "GDS5825", "description": "interleukin-1\u03b2 -/- knockout", "sample_id": [ "GSM1723405", "GSM1723406", "GSM1723407", "GSM1723408" ], "type": "genotype/variation", "id": "GDS5825_3" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5825", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5825.tab", "compression": "gz" } ], [ [ "GDS5826.tab" ], { "title": "Multiple myeloma cell lines with acquired resistance to chemotherapeutic agent carfilzomib", "description": "Analysis of proteasome inhibitor carfilzomib-resistant multiple myeloma (MM) cell lines KMS-11/Cfz and KMS-34/Cfz, after 1 week of growth in the absence of carfilzomib. Results provide insight into the molecular mechanisms underlying the acquisition of proteasome inhibitor resistance in MM.", "type": "Expression profiling by array", "pubmed_id": "26109433", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE69078", "order": "none", "update_date": "Jul 11 2016", "subsets": [ { "dataset_id": "GDS5826", "description": "KMS-11/Cfz", "sample_id": [ "GSM1692587", "GSM1692588", "GSM1692589" ], "type": "cell line", "id": "GDS5826_1" }, { "dataset_id": "GDS5826", "description": "KMS-34/Cfz", "sample_id": [ "GSM1692590", "GSM1692591", "GSM1692592" ], "type": "cell line", "id": "GDS5826_2" }, { "dataset_id": "GDS5826", "description": "KMS-11", "sample_id": [ "GSM1692593", "GSM1692594", "GSM1692595" ], "type": "cell line", "id": "GDS5826_3" }, { "dataset_id": "GDS5826", "description": "KMS-34", "sample_id": [ "GSM1692596", "GSM1692597", "GSM1692598" ], "type": "cell line", "id": "GDS5826_4" }, { "dataset_id": "GDS5826", "description": "carfilzomib-resistant MM", "sample_id": [ "GSM1692587", "GSM1692588", "GSM1692589", "GSM1692590", "GSM1692591", "GSM1692592" ], "type": "cell type", "id": "GDS5826_5" }, { "dataset_id": "GDS5826", "description": "parental MM", "sample_id": [ "GSM1692593", "GSM1692594", "GSM1692595", "GSM1692596", "GSM1692597", "GSM1692598" ], "type": "cell type", "id": "GDS5826_6" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5826", "version": 1.0, "instances": "12", "variables": 30809, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5826.tab", "compression": "gz" } ], [ [ "GDS583.tab" ], { "title": "Aging time course, normal adult", "description": "Examination of normal adult aging using synchronized populations at 0 - 144 hours. Employed CF512 fer-15(b26) II; fem-1 (hc17) IV mutant strain, which has defective spermatids thus eliminating contributions from embryonic transcripts.", "type": "Expression profiling by array", "pubmed_id": "14730301", "platform": "GPL576", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20000", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE832", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS583", "description": "0 h", "sample_id": [ "GSM12883" ], "type": "age", "id": "GDS583_1" }, { "dataset_id": "GDS583", "description": "8 h", "sample_id": [ "GSM12884" ], "type": "age", "id": "GDS583_2" }, { "dataset_id": "GDS583", "description": "16 h", "sample_id": [ "GSM12885" ], "type": "age", "id": "GDS583_3" }, { "dataset_id": "GDS583", "description": "28 h", "sample_id": [ "GSM12886" ], "type": "age", "id": "GDS583_4" }, { "dataset_id": "GDS583", "description": "52 h", "sample_id": [ "GSM12887" ], "type": "age", "id": "GDS583_5" }, { "dataset_id": "GDS583", "description": "96 h", "sample_id": [ "GSM12888" ], "type": "age", "id": "GDS583_6" }, { "dataset_id": "GDS583", "description": "144 h", "sample_id": [ "GSM12889" ], "type": "age", "id": "GDS583_7" } ], "taxid": "6239", "genes": 17956, "aggregation_function": "mean", "name": "GDS583", "version": 1.0, "instances": "7", "variables": 17958, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS583.tab", "compression": "gz" } ], [ [ "GDS584.tab" ], { "title": "Heat stress time course", "description": "Examination of effect of heat stress. Adult CF512 cultured at 25\u00b0C, then switched to 30\u00b0C and sampled over 12 hour time period.", "type": "Expression profiling by array", "pubmed_id": "14730301", "platform": "GPL924", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "19200", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE946", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS584", "description": "0 h", "sample_id": [ "GSM15008" ], "type": "time", "id": "GDS584_1" }, { "dataset_id": "GDS584", "description": "2 h", "sample_id": [ "GSM15009" ], "type": "time", "id": "GDS584_2" }, { "dataset_id": "GDS584", "description": "4 h", "sample_id": [ "GSM15010" ], "type": "time", "id": "GDS584_3" }, { "dataset_id": "GDS584", "description": "6 h", "sample_id": [ "GSM15011" ], "type": "time", "id": "GDS584_4" }, { "dataset_id": "GDS584", "description": "8 h", "sample_id": [ "GSM15012" ], "type": "time", "id": "GDS584_5" }, { "dataset_id": "GDS584", "description": "10 h", "sample_id": [ "GSM15013" ], "type": "time", "id": "GDS584_6" }, { "dataset_id": "GDS584", "description": "12 h", "sample_id": [ "GSM15014" ], "type": "time", "id": "GDS584_7" } ], "taxid": "6239", "genes": 18153, "aggregation_function": "mean", "name": "GDS584", "version": 1.0, "instances": "7", "variables": 18155, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS584.tab", "compression": "gz" } ], [ [ "GDS586.tab" ], { "title": "Myogenic differentiation timecourse (MG-U74A)", "description": "Analysis of early stages of myogenesis. C2C12 myoblasts induced to differentiate and examined during cell proliferation (days -2 to -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2 to 10).", "type": "Expression profiling by array", "pubmed_id": "14688207", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE989", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS586", "description": "-2 d", "sample_id": [ "GSM15502", "GSM15503", "GSM15504" ], "type": "time", "id": "GDS586_1" }, { "dataset_id": "GDS586", "description": "-1 d", "sample_id": [ "GSM15505", "GSM15506", "GSM15507" ], "type": "time", "id": "GDS586_2" }, { "dataset_id": "GDS586", "description": "0 d", "sample_id": [ "GSM15508", "GSM15509", "GSM15510" ], "type": "time", "id": "GDS586_3" }, { "dataset_id": "GDS586", "description": "2 d", "sample_id": [ "GSM15511", "GSM15517", "GSM15519" ], "type": "time", "id": "GDS586_4" }, { "dataset_id": "GDS586", "description": "4 d", "sample_id": [ "GSM15523", "GSM15524", "GSM15525" ], "type": "time", "id": "GDS586_5" }, { "dataset_id": "GDS586", "description": "6 d", "sample_id": [ "GSM15532", "GSM15534", "GSM15537" ], "type": "time", "id": "GDS586_6" }, { "dataset_id": "GDS586", "description": "8 d", "sample_id": [ "GSM15539", "GSM15541", "GSM15579" ], "type": "time", "id": "GDS586_7" }, { "dataset_id": "GDS586", "description": "10 d", "sample_id": [ "GSM15581", "GSM15583", "GSM15585" ], "type": "time", "id": "GDS586_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS586", "version": 1.0, "instances": "24", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS586.tab", "compression": "gz" } ], [ [ "GDS587.tab" ], { "title": "Myogenic differentiation timecourse (MG-U74C)", "description": "Analysis of early stages of myogenesis. C2C12 myoblasts induced to differentiate and examined during cell proliferation (days -2 to -1), at cell cycle withdrawal (day 0) and during myogenic fusion and maturation of multinucleated myotubes (days 2 to 10).", "type": "Expression profiling by array", "pubmed_id": "14688207", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE990", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS587", "description": "-2 d", "sample_id": [ "GSM15592", "GSM15593", "GSM15594" ], "type": "time", "id": "GDS587_1" }, { "dataset_id": "GDS587", "description": "-1 d", "sample_id": [ "GSM15595", "GSM15596", "GSM15597" ], "type": "time", "id": "GDS587_2" }, { "dataset_id": "GDS587", "description": "0 d", "sample_id": [ "GSM15598", "GSM15599", "GSM15600" ], "type": "time", "id": "GDS587_3" }, { "dataset_id": "GDS587", "description": "2 d", "sample_id": [ "GSM15601", "GSM15602", "GSM15603" ], "type": "time", "id": "GDS587_4" }, { "dataset_id": "GDS587", "description": "4 d", "sample_id": [ "GSM15604", "GSM15605", "GSM15606" ], "type": "time", "id": "GDS587_5" }, { "dataset_id": "GDS587", "description": "6 d", "sample_id": [ "GSM15607", "GSM15608", "GSM15609" ], "type": "time", "id": "GDS587_6" }, { "dataset_id": "GDS587", "description": "10 d", "sample_id": [ "GSM15610", "GSM15614", "GSM15615" ], "type": "time", "id": "GDS587_7" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS587", "version": 1.0, "instances": "21", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS587.tab", "compression": "gz" } ], [ [ "GDS5879.tab" ], { "title": "Pulmonary CDC11c+ cells from young and middle-age animals", "description": "Analysis of pulmonary CDC11c+ cells from 6-8 week and 10-13 month old C57BL/6 animals. CDC11c+ cells are key modulators of the immune response in the lung. Results provide insight into molecular mechanisms underlying the decline in immune function associated with aging.", "type": "Expression profiling by array", "pubmed_id": "26392224", "platform": "GPL6885", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "25697", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE71868", "order": "none", "update_date": "Jun 23 2016", "subsets": [ { "dataset_id": "GDS5879", "description": "young", "sample_id": [ "GSM1847067", "GSM1847068", "GSM1847069", "GSM1847070" ], "type": "age", "id": "GDS5879_1" }, { "dataset_id": "GDS5879", "description": "middle age", "sample_id": [ "GSM1847063", "GSM1847064", "GSM1847065", "GSM1847066" ], "type": "age", "id": "GDS5879_2" } ], "taxid": "10090", "genes": 18033, "aggregation_function": "mean", "name": "GDS5879", "version": 1.0, "instances": "8", "variables": 18035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5879.tab", "compression": "gz" } ], [ [ "GDS588.tab" ], { "title": "Cystic fibrosis and small intestine", "description": "Analysis of small intestine from 40 day old CFTR-/- and CFTR+/+ mice. The CFTR null mouse has a severe intestinal phenotype serving as model for cystic fibrosis related growth deficiency, meconium ileus, and distal intestinal obstructive syndrome.", "type": "Expression profiling by array", "pubmed_id": "14739145", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE765", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS588", "description": "CFTR+/+", "sample_id": [ "GSM11902", "GSM11903", "GSM11904" ], "type": "genotype/variation", "id": "GDS588_1" }, { "dataset_id": "GDS588", "description": "CFTR-/-", "sample_id": [ "GSM11905", "GSM11906", "GSM11910" ], "type": "genotype/variation", "id": "GDS588_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS588", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS588.tab", "compression": "gz" } ], [ [ "GDS5880.tab" ], { "title": "Nebulin deficiency effect on the quadriceps", "description": "Analysis of quadriceps muscles from 6 week old males with a conditional knockout of nebulin in their striated muscles. Nebulin is a giant filamentous protein that is coextensive with actin filaments of the skeletal muscle sarcomere. Results provide insight into the role of nebulin in adult muscles.", "type": "Expression profiling by array", "pubmed_id": "26123491", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE70213", "order": "none", "update_date": "May 26 2016", "subsets": [ { "dataset_id": "GDS5880", "description": "control", "sample_id": [ "GSM1720833", "GSM1720834", "GSM1720835", "GSM1720836", "GSM1720837", "GSM1720838" ], "type": "genotype/variation", "id": "GDS5880_1" }, { "dataset_id": "GDS5880", "description": "nebulin conditional knockout", "sample_id": [ "GSM1720839", "GSM1720840", "GSM1720841", "GSM1720842", "GSM1720843", "GSM1720844" ], "type": "genotype/variation", "id": "GDS5880_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5880", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5880.tab", "compression": "gz" } ], [ [ "GDS5881.tab" ], { "title": "Nebulin deficiency effect on the soleus", "description": "Analysis of soleus muscles from 6 week old males with a conditional knockout of nebulin in their striated muscles. Nebulin is a giant filamentous protein that is coextensive with actin filaments of the skeletal muscle sarcomere. Results provide insight into the role of nebulin in adult muscles.", "type": "Expression profiling by array", "pubmed_id": "26123491", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE70213", "order": "none", "update_date": "May 26 2016", "subsets": [ { "dataset_id": "GDS5881", "description": "control", "sample_id": [ "GSM1720845", "GSM1720846", "GSM1720847", "GSM1720848", "GSM1720849", "GSM1720850" ], "type": "genotype/variation", "id": "GDS5881_1" }, { "dataset_id": "GDS5881", "description": "nebulin conditional knockout", "sample_id": [ "GSM1720851", "GSM1720852", "GSM1720853", "GSM1720854", "GSM1720855", "GSM1720856" ], "type": "genotype/variation", "id": "GDS5881_2" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS5881", "version": 1.0, "instances": "12", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5881.tab", "compression": "gz" } ], [ [ "GDS589.tab" ], { "title": "Multiple normal tissue gene expression across strains", "description": "Examination of normal physiological gene expression in 11 peripheral and 15 brain regions in three common out-bred rat strains, Sprague Dawley, Wistar, and Wistar Kyoto.", "type": "Expression profiling by array", "pubmed_id": "15060018", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "122", "value_type": "count", "reference_series": "GSE952", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS589", "description": "Sprague Dawley", "sample_id": [ "GSM15125", "GSM15138", "GSM15139", "GSM15140", "GSM15141", "GSM15142", "GSM15143", "GSM15151", "GSM15152", "GSM15153", "GSM15154", "GSM15155", "GSM15156", "GSM15169", "GSM15170", "GSM15171", "GSM15172", "GSM15173", "GSM15174", "GSM15175", "GSM15179", "GSM15183", "GSM15184", "GSM15185", "GSM15193", "GSM15194", "GSM15195", "GSM15196", "GSM15199", "GSM15200", "GSM15201", "GSM15202", "GSM15203", "GSM15204", "GSM15205", "GSM15206", "GSM15207", "GSM15208", "GSM15209", "GSM15210", "GSM15211", "GSM15212", "GSM15213", "GSM15214", "GSM15215", "GSM15216", "GSM15217", "GSM15218", "GSM15219", "GSM15220", "GSM15221", "GSM15223", "GSM15224", "GSM15225", "GSM15226", "GSM15227", "GSM15228", "GSM15229", "GSM15230", "GSM15231", "GSM15232", "GSM15233", "GSM15234", "GSM15235", "GSM15236", "GSM15237", "GSM15238" ], "type": "strain", "id": "GDS589_1" }, { "dataset_id": "GDS589", "description": "Wistar", "sample_id": [ "GSM15117", "GSM15118", "GSM15119", "GSM15120", "GSM15121", "GSM15122", "GSM15123", "GSM15124", "GSM15126", "GSM15127", "GSM15128", "GSM15129", "GSM15130", "GSM15131", "GSM15132", "GSM15144", "GSM15145", "GSM15146", "GSM15157", "GSM15158", "GSM15159", "GSM15160", "GSM15161", "GSM15162", "GSM15176", "GSM15177", "GSM15180", "GSM15190", "GSM15191", "GSM15192", "GSM15197", "GSM15198" ], "type": "strain", "id": "GDS589_2" }, { "dataset_id": "GDS589", "description": "Wistar Kyoto", "sample_id": [ "GSM15133", "GSM15134", "GSM15135", "GSM15136", "GSM15137", "GSM15147", "GSM15148", "GSM15149", "GSM15150", "GSM15163", "GSM15164", "GSM15165", "GSM15166", "GSM15167", "GSM15168", "GSM15178", "GSM15181", "GSM15182", "GSM15186", "GSM15189", "GSM15222" ], "type": "strain", "id": "GDS589_3" }, { "dataset_id": "GDS589", "description": "Fisher", "sample_id": [ "GSM15187", "GSM15188" ], "type": "strain", "id": "GDS589_4" }, { "dataset_id": "GDS589", "description": "dorsal raphe", "sample_id": [ "GSM15231", "GSM15232" ], "type": "tissue", "id": "GDS589_5" }, { "dataset_id": "GDS589", "description": "hypothalamus", "sample_id": [ "GSM15233", "GSM15234" ], "type": "tissue", "id": "GDS589_6" }, { "dataset_id": "GDS589", "description": "pineal", "sample_id": [ "GSM15193", "GSM15194" ], "type": "tissue", "id": "GDS589_7" }, { "dataset_id": "GDS589", "description": "pituitary", "sample_id": [ "GSM15195", "GSM15196" ], "type": "tissue", "id": "GDS589_8" }, { "dataset_id": "GDS589", "description": "kidney", "sample_id": [ "GSM15207", "GSM15208" ], "type": "tissue", "id": "GDS589_9" }, { "dataset_id": "GDS589", "description": "heart", "sample_id": [ "GSM15209", "GSM15210" ], "type": "tissue", "id": "GDS589_10" }, { "dataset_id": "GDS589", "description": "skeletal muscle", "sample_id": [ "GSM15203", "GSM15204" ], "type": "tissue", "id": "GDS589_11" }, { "dataset_id": "GDS589", "description": "small intestine", "sample_id": [ "GSM15201", "GSM15202" ], "type": "tissue", "id": "GDS589_12" }, { "dataset_id": "GDS589", "description": "large intestine", "sample_id": [ "GSM15211", "GSM15212" ], "type": "tissue", "id": "GDS589_13" }, { "dataset_id": "GDS589", "description": "spleen", "sample_id": [ "GSM15213", "GSM15214" ], "type": "tissue", "id": "GDS589_14" }, { "dataset_id": "GDS589", "description": "thymus", "sample_id": [ "GSM15215", "GSM15216" ], "type": "tissue", "id": "GDS589_15" }, { "dataset_id": "GDS589", "description": "bone marrow", "sample_id": [ "GSM15205", "GSM15206" ], "type": "tissue", "id": "GDS589_16" }, { "dataset_id": "GDS589", "description": "endothelial cells", "sample_id": [ "GSM15217", "GSM15218" ], "type": "tissue", "id": "GDS589_17" }, { "dataset_id": "GDS589", "description": "cornea", "sample_id": [ "GSM15237", "GSM15238" ], "type": "tissue", "id": "GDS589_18" }, { "dataset_id": "GDS589", "description": "dorsal root ganglion", "sample_id": [ "GSM15187", "GSM15188" ], "type": "tissue", "id": "GDS589_19" }, { "dataset_id": "GDS589", "description": "ventral tegmental area", "sample_id": [ "GSM15219", "GSM15220" ], "type": "tissue", "id": "GDS589_20" }, { "dataset_id": "GDS589", "description": "primary cortex neurons", "sample_id": [ "GSM15235", "GSM15236" ], "type": "tissue", "id": "GDS589_21" }, { "dataset_id": "GDS589", "description": "nucleus accumbens core", "sample_id": [ "GSM15199", "GSM15200" ], "type": "tissue", "id": "GDS589_22" }, { "dataset_id": "GDS589", "description": "nucleus accumbens shell", "sample_id": [ "GSM15225", "GSM15226" ], "type": "tissue", "id": "GDS589_23" }, { "dataset_id": "GDS589", "description": "nucleus accumbens whole", "sample_id": [ "GSM15197", "GSM15198" ], "type": "tissue", "id": "GDS589_24" }, { "dataset_id": "GDS589", "description": "amygdala central nucleus", "sample_id": [ "GSM15125", "GSM15175" ], "type": "tissue", "id": "GDS589_25" }, { "dataset_id": "GDS589", "description": "locus coeruleus", "sample_id": [ "GSM15227", "GSM15228" ], "type": "tissue", "id": "GDS589_26" }, { "dataset_id": "GDS589", "description": "prefrontal cortex", "sample_id": [ "GSM15229", "GSM15230" ], "type": "tissue", "id": "GDS589_27" }, { "dataset_id": "GDS589", "description": "frontal cortex", "sample_id": [ "GSM15169", "GSM15170", "GSM15171", "GSM15172", "GSM15173", "GSM15174", "GSM15163", "GSM15164", "GSM15165", "GSM15166", "GSM15167", "GSM15168", "GSM15117", "GSM15118", "GSM15119", "GSM15120", "GSM15157", "GSM15158", "GSM15159", "GSM15160", "GSM15161", "GSM15162" ], "type": "tissue", "id": "GDS589_28" }, { "dataset_id": "GDS589", "description": "hippocampus", "sample_id": [ "GSM15179", "GSM15178", "GSM15126" ], "type": "tissue", "id": "GDS589_29" }, { "dataset_id": "GDS589", "description": "cerebral cortex", "sample_id": [ "GSM15151", "GSM15152", "GSM15153", "GSM15154", "GSM15155", "GSM15156", "GSM15147", "GSM15148", "GSM15149", "GSM15150", "GSM15144", "GSM15145", "GSM15146" ], "type": "tissue", "id": "GDS589_30" }, { "dataset_id": "GDS589", "description": "ventral striatum", "sample_id": [ "GSM15183", "GSM15184", "GSM15185", "GSM15181", "GSM15182", "GSM15180", "GSM15191", "GSM15192" ], "type": "tissue", "id": "GDS589_31" }, { "dataset_id": "GDS589", "description": "dorsal striatum", "sample_id": [ "GSM15186", "GSM15189", "GSM15190", "GSM15223", "GSM15224" ], "type": "tissue", "id": "GDS589_32" }, { "dataset_id": "GDS589", "description": "amygdala", "sample_id": [ "GSM15221", "GSM15222", "GSM15177", "GSM15176", "GSM15121", "GSM15122", "GSM15123", "GSM15124" ], "type": "tissue", "id": "GDS589_33" }, { "dataset_id": "GDS589", "description": "cerebellum", "sample_id": [ "GSM15138", "GSM15139", "GSM15140", "GSM15141", "GSM15142", "GSM15143", "GSM15133", "GSM15134", "GSM15135", "GSM15136", "GSM15137", "GSM15127", "GSM15128", "GSM15129", "GSM15130", "GSM15131", "GSM15132" ], "type": "tissue", "id": "GDS589_34" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS589", "version": 1.0, "instances": "122", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS589.tab", "compression": "gz" } ], [ [ "GDS59.tab" ], { "title": "Lung hypertension recovery (U74Bv2)", "description": "Analysis of vascular remodeling following pulmonary hypertension. Lungs of normoxic and hypoxic treated animals analyzed. Hypoxia induces vasoconstriction then hypertrophy/hyperplasia of pulmonary vascular smooth muscle and endothelial cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE482", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS59", "description": "normoxic", "sample_id": [ "GSM1227", "GSM1230" ], "type": "protocol", "id": "GDS59_1" }, { "dataset_id": "GDS59", "description": "hypoxic", "sample_id": [ "GSM4172", "GSM4175", "GSM4178", "GSM4181", "GSM1216", "GSM1219", "GSM1222", "GSM1225" ], "type": "protocol", "id": "GDS59_2" }, { "dataset_id": "GDS59", "description": "0 hour", "sample_id": [ "GSM1227", "GSM1230" ], "type": "time", "id": "GDS59_3" }, { "dataset_id": "GDS59", "description": "10 hour", "sample_id": [ "GSM1216", "GSM1219" ], "type": "time", "id": "GDS59_4" }, { "dataset_id": "GDS59", "description": "2 day", "sample_id": [ "GSM4172", "GSM4175" ], "type": "time", "id": "GDS59_5" }, { "dataset_id": "GDS59", "description": "4 day", "sample_id": [ "GSM1222", "GSM1225" ], "type": "time", "id": "GDS59_6" }, { "dataset_id": "GDS59", "description": "6 day", "sample_id": [ "GSM4178", "GSM4181" ], "type": "time", "id": "GDS59_7" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS59", "version": 1.0, "instances": "10", "variables": 9256, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS59.tab", "compression": "gz" } ], [ [ "GDS591.tab" ], { "title": "Tetracycline transactivator expression in heart", "description": "Determination of effects of tetracycline transactivator (tTA) expression in cardiac ventricle of FVBN mice.", "type": "Expression profiling by array", "pubmed_id": "15797971", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE986", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS591", "description": "wild type", "sample_id": [ "GSM15056", "GSM15057", "GSM15058", "GSM15059", "GSM15060", "GSM15061", "GSM15062" ], "type": "strain", "id": "GDS591_1" }, { "dataset_id": "GDS591", "description": "tTA", "sample_id": [ "GSM15063", "GSM15064", "GSM15065", "GSM15066", "GSM15067", "GSM15068", "GSM15069", "GSM15070", "GSM15071", "GSM15072", "GSM15073", "GSM15074", "GSM15075" ], "type": "strain", "id": "GDS591_2" }, { "dataset_id": "GDS591", "description": "control", "sample_id": [ "GSM15056", "GSM15057", "GSM15058", "GSM15063", "GSM15064", "GSM15065", "GSM15066", "GSM15067", "GSM15068", "GSM15069", "GSM15070" ], "type": "agent", "id": "GDS591_3" }, { "dataset_id": "GDS591", "description": "doxycycline", "sample_id": [ "GSM15059", "GSM15060", "GSM15061", "GSM15062", "GSM15071", "GSM15072", "GSM15073", "GSM15074", "GSM15075" ], "type": "agent", "id": "GDS591_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS591", "version": 1.0, "instances": "20", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS591.tab", "compression": "gz" } ], [ [ "GDS5913.tab" ], { "title": "SRPIN803 small molecule inhibitor of SRPK1 effect on retinal pigment epithelial cell line", "description": "Analysis of retinal pigment epithelial ARPE-19 cells treated with SRPIN803, a small molecule inhibitor of serine-arginine protein kinase 1 SRPK1. SRPK1 inhibition prevents pathological angiogenesis. Results provide insight into the molecular mechanisms underlying the inhibitory activity of SRPIN803.", "type": "Expression profiling by array", "pubmed_id": "25993998", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE62947", "order": "none", "update_date": "May 26 2016", "subsets": [ { "dataset_id": "GDS5913", "description": "DMSO", "sample_id": [ "GSM1536990", "GSM1536991", "GSM1536992" ], "type": "agent", "id": "GDS5913_1" }, { "dataset_id": "GDS5913", "description": "SRPIN803", "sample_id": [ "GSM1536993", "GSM1536994", "GSM1536995" ], "type": "agent", "id": "GDS5913_2" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS5913", "version": 1.0, "instances": "6", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5913.tab", "compression": "gz" } ], [ [ "GDS5914.tab" ], { "title": "YAP transcriptional regulator depletion effect on endothelial cells", "description": "Analysis of umbilical vein endothelial HUVEC cells depleted for the transcriptional regulator YAP. YAP binds to the SH3 domain of the transcriptional activator Yes. Results provide insight into the role of YAP in endothelial cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "25635998", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE61989", "order": "none", "update_date": "Oct 23 2015", "subsets": [ { "dataset_id": "GDS5914", "description": "control", "sample_id": [ "GSM1517967", "GSM1517968", "GSM1517969", "GSM1517970" ], "type": "protocol", "id": "GDS5914_1" }, { "dataset_id": "GDS5914", "description": "YAP depletion", "sample_id": [ "GSM1517971", "GSM1517972", "GSM1517973", "GSM1517974", "GSM1517975", "GSM1517976", "GSM1517977", "GSM1517978" ], "type": "protocol", "id": "GDS5914_2" }, { "dataset_id": "GDS5914", "description": "siYAP construct 1", "sample_id": [ "GSM1517971", "GSM1517972", "GSM1517973", "GSM1517974" ], "type": "agent", "id": "GDS5914_3" }, { "dataset_id": "GDS5914", "description": "siYAP construct 2", "sample_id": [ "GSM1517975", "GSM1517976", "GSM1517977", "GSM1517978" ], "type": "agent", "id": "GDS5914_4" }, { "dataset_id": "GDS5914", "description": "RISC-free control", "sample_id": [ "GSM1517967", "GSM1517968", "GSM1517969", "GSM1517970" ], "type": "agent", "id": "GDS5914_5" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5914", "version": 1.0, "instances": "12", "variables": 26806, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5914.tab", "compression": "gz" } ], [ [ "GDS592.tab" ], { "title": "Large-scale analysis of the mouse transcriptome (GNF1M)", "description": "Gene atlas of mouse protein-encoding transcriptome. Gene expression profiles from 61 physiologically normal tissues. Samples generated from adult (10-12 week old) C57BL/6 mice (4 male, 3 female) by dissection.", "type": "Expression profiling by array", "pubmed_id": "15075390", "platform": "GPL1073", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "31373", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "122", "value_type": "count", "reference_series": "GSE1133", "order": "none", "update_date": "May 13 2004", "subsets": [ { "dataset_id": "GDS592", "description": "substantia nigra", "sample_id": [ "GSM18584", "GSM18585" ], "type": "tissue", "id": "GDS592_1" }, { "dataset_id": "GDS592", "description": "trigeminal", "sample_id": [ "GSM18608", "GSM18609" ], "type": "tissue", "id": "GDS592_2" }, { "dataset_id": "GDS592", "description": "dorsal root ganglia", "sample_id": [ "GSM18610", "GSM18611" ], "type": "tissue", "id": "GDS592_3" }, { "dataset_id": "GDS592", "description": "spinal cord lower", "sample_id": [ "GSM18588", "GSM18589" ], "type": "tissue", "id": "GDS592_4" }, { "dataset_id": "GDS592", "description": "spinal cord upper", "sample_id": [ "GSM18586", "GSM18587" ], "type": "tissue", "id": "GDS592_5" }, { "dataset_id": "GDS592", "description": "amygdala", "sample_id": [ "GSM18598", "GSM18599" ], "type": "tissue", "id": "GDS592_6" }, { "dataset_id": "GDS592", "description": "cerebellum", "sample_id": [ "GSM18606", "GSM18607" ], "type": "tissue", "id": "GDS592_7" }, { "dataset_id": "GDS592", "description": "cerebral cortex", "sample_id": [ "GSM18596", "GSM18597" ], "type": "tissue", "id": "GDS592_8" }, { "dataset_id": "GDS592", "description": "dorsal striatum", "sample_id": [ "GSM18600", "GSM18601" ], "type": "tissue", "id": "GDS592_9" }, { "dataset_id": "GDS592", "description": "frontal cortex", "sample_id": [ "GSM18594", "GSM18595" ], "type": "tissue", "id": "GDS592_10" }, { "dataset_id": "GDS592", "description": "hippocampus", "sample_id": [ "GSM18602", "GSM18603" ], "type": "tissue", "id": "GDS592_11" }, { "dataset_id": "GDS592", "description": "hypothalamus", "sample_id": [ "GSM18590", "GSM18591" ], "type": "tissue", "id": "GDS592_12" }, { "dataset_id": "GDS592", "description": "olfactory bulb", "sample_id": [ "GSM18604", "GSM18605" ], "type": "tissue", "id": "GDS592_13" }, { "dataset_id": "GDS592", "description": "preoptic", "sample_id": [ "GSM18592", "GSM18593" ], "type": "tissue", "id": "GDS592_14" }, { "dataset_id": "GDS592", "description": "retina", "sample_id": [ "GSM18614", "GSM18615" ], "type": "tissue", "id": "GDS592_15" }, { "dataset_id": "GDS592", "description": "brown fat", "sample_id": [ "GSM18676", "GSM18677" ], "type": "tissue", "id": "GDS592_16" }, { "dataset_id": "GDS592", "description": "adipose tissue", "sample_id": [ "GSM18624", "GSM18625" ], "type": "tissue", "id": "GDS592_17" }, { "dataset_id": "GDS592", "description": "embryo day 6.5", "sample_id": [ "GSM18638", "GSM18639" ], "type": "tissue", "id": "GDS592_18" }, { "dataset_id": "GDS592", "description": "embryo day 7.5", "sample_id": [ "GSM18636", "GSM18637" ], "type": "tissue", "id": "GDS592_19" }, { "dataset_id": "GDS592", "description": "embryo day 8.5", "sample_id": [ "GSM18634", "GSM18635" ], "type": "tissue", "id": "GDS592_20" }, { "dataset_id": "GDS592", "description": "embryo day 9.5", "sample_id": [ "GSM18632", "GSM18633" ], "type": "tissue", "id": "GDS592_21" }, { "dataset_id": "GDS592", "description": "embryo day 10.5", "sample_id": [ "GSM18630", "GSM18631" ], "type": "tissue", "id": "GDS592_22" }, { "dataset_id": "GDS592", "description": "fertilized egg", "sample_id": [ "GSM18698", "GSM18699" ], "type": "tissue", "id": "GDS592_23" }, { "dataset_id": "GDS592", "description": "blastocyts", "sample_id": [ "GSM18686", "GSM18687" ], "type": "tissue", "id": "GDS592_24" }, { "dataset_id": "GDS592", "description": "mammary gland (lact)", "sample_id": [ "GSM18684", "GSM18685" ], "type": "tissue", "id": "GDS592_25" }, { "dataset_id": "GDS592", "description": "ovary", "sample_id": [ "GSM18622", "GSM18623" ], "type": "tissue", "id": "GDS592_26" }, { "dataset_id": "GDS592", "description": "placenta", "sample_id": [ "GSM18682", "GSM18683" ], "type": "tissue", "id": "GDS592_27" }, { "dataset_id": "GDS592", "description": "umbilical cord", "sample_id": [ "GSM18656", "GSM18657" ], "type": "tissue", "id": "GDS592_28" }, { "dataset_id": "GDS592", "description": "uterus", "sample_id": [ "GSM18620", "GSM18621" ], "type": "tissue", "id": "GDS592_29" }, { "dataset_id": "GDS592", "description": "oocyte", "sample_id": [ "GSM18700", "GSM18701" ], "type": "tissue", "id": "GDS592_30" }, { "dataset_id": "GDS592", "description": "prostate", "sample_id": [ "GSM18650", "GSM18651" ], "type": "tissue", "id": "GDS592_31" }, { "dataset_id": "GDS592", "description": "testis", "sample_id": [ "GSM18704", "GSM18705" ], "type": "tissue", "id": "GDS592_32" }, { "dataset_id": "GDS592", "description": "heart", "sample_id": [ "GSM18678", "GSM18679" ], "type": "tissue", "id": "GDS592_33" }, { "dataset_id": "GDS592", "description": "large intestine", "sample_id": [ "GSM18660", "GSM18661" ], "type": "tissue", "id": "GDS592_34" }, { "dataset_id": "GDS592", "description": "small intestine", "sample_id": [ "GSM18690", "GSM18691" ], "type": "tissue", "id": "GDS592_35" }, { "dataset_id": "GDS592", "description": "B220+ B cells", "sample_id": [ "GSM18670", "GSM18671" ], "type": "tissue", "id": "GDS592_36" }, { "dataset_id": "GDS592", "description": "CD4+ T cells", "sample_id": [ "GSM18672", "GSM18673" ], "type": "tissue", "id": "GDS592_37" }, { "dataset_id": "GDS592", "description": "CD8+ T cells", "sample_id": [ "GSM18674", "GSM18675" ], "type": "tissue", "id": "GDS592_38" }, { "dataset_id": "GDS592", "description": "liver", "sample_id": [ "GSM18696", "GSM18697" ], "type": "tissue", "id": "GDS592_39" }, { "dataset_id": "GDS592", "description": "lung", "sample_id": [ "GSM18654", "GSM18655" ], "type": "tissue", "id": "GDS592_40" }, { "dataset_id": 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"description": "pancreas", "sample_id": [ "GSM18702", "GSM18703" ], "type": "tissue", "id": "GDS592_48" }, { "dataset_id": "GDS592", "description": "pituitary", "sample_id": [ "GSM18612", "GSM18613" ], "type": "tissue", "id": "GDS592_49" }, { "dataset_id": "GDS592", "description": "digits", "sample_id": [ "GSM18642", "GSM18643" ], "type": "tissue", "id": "GDS592_50" }, { "dataset_id": "GDS592", "description": "epidermis", "sample_id": [ "GSM18640", "GSM18641" ], "type": "tissue", "id": "GDS592_51" }, { "dataset_id": "GDS592", "description": "bone", "sample_id": [ "GSM18664", "GSM18665" ], "type": "tissue", "id": "GDS592_52" }, { "dataset_id": "GDS592", "description": "bone marrow", "sample_id": [ "GSM18662", "GSM18663" ], "type": "tissue", "id": "GDS592_53" }, { "dataset_id": "GDS592", "description": "spleen", "sample_id": [ "GSM18666", "GSM18667" ], "type": "tissue", "id": "GDS592_54" }, { "dataset_id": "GDS592", "description": "stomach", "sample_id": [ "GSM18658", "GSM18659" ], 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"gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS592.tab", "compression": "gz" } ], [ [ "GDS5948.tab" ], { "title": "Zipper-interacting protein kinase deficiency effect on coronary artery smooth muscle cells in vitro", "description": "Analysis of cultured vascular smooth muscle cells following knockdown of zipper-interacting protein kinase (ZIPK). ZIPK is phosphorylated and activated by Rho-associated kinase 1 (ROCK1). These results, together with those from GDS5659, provide further insight into ROCK1 and ZIPK functions.", "type": "Expression profiling by array", "pubmed_id": "25723491", "platform": "GPL6244", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "33297", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE56819", "order": "none", "update_date": "Nov 16 2015", "subsets": [ { "dataset_id": "GDS5948", "description": "control", "sample_id": [ "GSM1369856", "GSM1369857", "GSM1369858" ], "type": "genotype/variation", "id": "GDS5948_1" }, { "dataset_id": "GDS5948", "description": "ZIPK knockdown", "sample_id": [ "GSM1369862", "GSM1369863", "GSM1369864" ], "type": "genotype/variation", "id": "GDS5948_2" } ], "taxid": "9606", "genes": 26803, "aggregation_function": "mean", "name": "GDS5948", "version": 1.0, "instances": "6", "variables": 26805, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS5948.tab", "compression": "gz" } ], [ [ "GDS596.tab" ], { "title": "Large-scale analysis of the human transcriptome (HG-U133A)", "description": "Gene atlas of human protein-encoding transcriptome. Examined gene expression profiles from 79 physiologically normal tissues obtained from various sources.", "type": "Expression profiling by array", "pubmed_id": "15075390", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "158", "value_type": "count", "reference_series": "GSE1133", "order": "none", "update_date": "May 14 2004", "subsets": [ { "dataset_id": "GDS596", "description": "amygdala", "sample_id": [ "GSM18927", "GSM18928" ], "type": "tissue", "id": "GDS596_1" }, { "dataset_id": "GDS596", "description": "cerebellum peduncles", "sample_id": [ "GSM18915", "GSM18916" ], "type": "tissue", "id": "GDS596_2" }, { "dataset_id": "GDS596", "description": "cingulate cortex", "sample_id": [ "GSM18939", "GSM18940" ], "type": "tissue", "id": "GDS596_3" }, { "dataset_id": "GDS596", "description": "hypothalamus", "sample_id": [ "GSM18933", "GSM18934" ], "type": "tissue", "id": "GDS596_4" }, { "dataset_id": "GDS596", "description": "medulla oblongata", "sample_id": [ "GSM18925", "GSM18926" ], "type": "tissue", "id": "GDS596_5" }, { "dataset_id": "GDS596", "description": "occipital lobe", "sample_id": [ "GSM18931", "GSM18932" ], "type": "tissue", "id": "GDS596_6" }, { "dataset_id": "GDS596", "description": "olfactory bulb", "sample_id": [ "GSM19019", "GSM19020" ], "type": "tissue", "id": "GDS596_7" }, { "dataset_id": "GDS596", "description": "parietal lobe", "sample_id": [ "GSM18923", "GSM18924" ], "type": "tissue", "id": "GDS596_8" }, { "dataset_id": "GDS596", "description": "pons", "sample_id": [ "GSM18941", "GSM18942" ], "type": "tissue", "id": "GDS596_9" }, { "dataset_id": "GDS596", "description": "prefrontal cortex", "sample_id": [ "GSM18929", "GSM18930" ], "type": "tissue", "id": "GDS596_10" }, { "dataset_id": "GDS596", "description": "temporal lobe", "sample_id": [ "GSM18911", "GSM18912" 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"type": "tissue", "id": "GDS596_54" }, { "dataset_id": "GDS596", "description": "PB-CD56+NK cells", "sample_id": [ "GSM18875", "GSM18876" ], "type": "tissue", "id": "GDS596_55" }, { "dataset_id": "GDS596", "description": "PB-CD8+T cells", "sample_id": [ "GSM18879", "GSM18880" ], "type": "tissue", "id": "GDS596_56" }, { "dataset_id": "GDS596", "description": "PB-CD14+monocytes", "sample_id": [ "GSM18871", "GSM18872" ], "type": "tissue", "id": "GDS596_57" }, { "dataset_id": "GDS596", "description": "lymph node", "sample_id": [ "GSM18903", "GSM18904" ], "type": "tissue", "id": "GDS596_58" }, { "dataset_id": "GDS596", "description": "lung", "sample_id": [ "GSM18949", "GSM18950" ], "type": "tissue", "id": "GDS596_59" }, { "dataset_id": "GDS596", "description": "liver", "sample_id": [ "GSM18953", "GSM18954" ], "type": "tissue", "id": "GDS596_60" }, { "dataset_id": "GDS596", "description": "skeletal muscle", "sample_id": [ "GSM19013", "GSM19014" ], "type": "tissue", "id": "GDS596_61" }, { 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"sample_id": [ "GSM18899", "GSM18900" ], "type": "tissue", "id": "GDS596_69" }, { "dataset_id": "GDS596", "description": "thyroid", "sample_id": [ "GSM18961", "GSM18962" ], "type": "tissue", "id": "GDS596_70" }, { "dataset_id": "GDS596", "description": "tonsil", "sample_id": [ "GSM18901", "GSM18902" ], "type": "tissue", "id": "GDS596_71" }, { "dataset_id": "GDS596", "description": "trachea", "sample_id": [ "GSM18993", "GSM18994" ], "type": "tissue", "id": "GDS596_72" }, { "dataset_id": "GDS596", "description": "colorectal adenocarcinoma", "sample_id": [ "GSM18865", "GSM18866" ], "type": "tissue", "id": "GDS596_73" }, { "dataset_id": "GDS596", "description": "leukemia chronic myelogenous K562", "sample_id": [ "GSM18897", "GSM18898" ], "type": "tissue", "id": "GDS596_74" }, { "dataset_id": "GDS596", "description": "leukemia lymphoblastic molt4", "sample_id": [ "GSM18887", "GSM18888" ], "type": "tissue", "id": "GDS596_75" }, { "dataset_id": "GDS596", "description": "leukemia promyelocytic 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Hypertrophy induced by aortic banding, myocardial infarction, an arteriovenous fistula, or hormone (angiotensin 2 or thyroxin analog) infusion.", "type": "Expression profiling by array", "pubmed_id": "18629135", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "46", "value_type": "count", "reference_series": "GSE738", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS598", "description": "control", "sample_id": [ "GSM11158", "GSM11159", "GSM11162", "GSM11163", "GSM11166", "GSM11167", "GSM11172", "GSM11173", "GSM11178", "GSM11179", "GSM11182", "GSM11183", "GSM11186", "GSM11187", "GSM11190", "GSM11191", "GSM11196", "GSM11197", "GSM11202", "GSM11203" ], "type": "disease state", "id": "GDS598_1" }, { "dataset_id": "GDS598", "description": "cardiac hypertrophy", "sample_id": [ "GSM11160", "GSM11161", "GSM11164", "GSM11165", "GSM11168", "GSM11169", "GSM11170", "GSM11171", "GSM11174", "GSM11175", "GSM11176", "GSM11177", "GSM11180", "GSM11181", "GSM11184", "GSM11185", "GSM11188", "GSM11189", "GSM11192", "GSM11193", "GSM11194", "GSM11195", "GSM11198", "GSM11199", "GSM11200", "GSM11201" ], "type": "disease state", "id": "GDS598_2" }, { "dataset_id": "GDS598", "description": "2 w", "sample_id": [ "GSM11196", "GSM11197", "GSM11198", "GSM11199", "GSM11200", "GSM11201" ], "type": "time", "id": "GDS598_3" }, { "dataset_id": "GDS598", "description": "3 w", "sample_id": [ "GSM11160", "GSM11161", "GSM11158", "GSM11159", "GSM11166", "GSM11167", "GSM11168", "GSM11169", "GSM11170", "GSM11171" ], "type": "time", "id": "GDS598_4" }, { "dataset_id": "GDS598", "description": "6 w", "sample_id": [ "GSM11178", "GSM11179", "GSM11180", "GSM11181" ], "type": "time", "id": "GDS598_5" }, { "dataset_id": "GDS598", "description": "8 w", "sample_id": [ "GSM11162", "GSM11163", "GSM11164", "GSM11165" ], "type": "time", "id": "GDS598_6" }, { "dataset_id": "GDS598", "description": "9 w", "sample_id": [ "GSM11172", "GSM11173", "GSM11174", "GSM11175", "GSM11176", "GSM11177" ], "type": "time", "id": "GDS598_7" }, { "dataset_id": "GDS598", "description": "12 w", "sample_id": [ "GSM11182", "GSM11183", "GSM11184", "GSM11185" ], "type": "time", "id": "GDS598_8" }, { "dataset_id": "GDS598", "description": "16 w", "sample_id": [ "GSM11186", "GSM11187", "GSM11188", "GSM11189" ], "type": "time", "id": "GDS598_9" }, { "dataset_id": "GDS598", "description": "30 w", "sample_id": [ "GSM11190", "GSM11191", "GSM11192", "GSM11193", "GSM11194", "GSM11195" ], "type": "time", "id": "GDS598_10" }, { "dataset_id": "GDS598", "description": "NA", "sample_id": [ "GSM11202", "GSM11203" ], "type": "time", "id": "GDS598_11" }, { "dataset_id": "GDS598", "description": "neonatal", "sample_id": [ "GSM11202", "GSM11203" ], "type": "protocol", "id": "GDS598_12" }, { "dataset_id": "GDS598", "description": "av-fistula", "sample_id": [ "GSM11160", "GSM11161", "GSM11164", "GSM11165" ], "type": "protocol", "id": "GDS598_13" }, { "dataset_id": "GDS598", "description": "av-fistula - sham", "sample_id": [ "GSM11158", "GSM11159", "GSM11162", "GSM11163" ], "type": "protocol", "id": "GDS598_14" }, { "dataset_id": "GDS598", "description": "myocardial infarction", "sample_id": [ "GSM11168", "GSM11169", "GSM11170", "GSM11171", "GSM11174", "GSM11175", "GSM11176", "GSM11177" ], "type": "protocol", "id": "GDS598_15" }, { "dataset_id": "GDS598", "description": "myocardial infarction - sham", "sample_id": [ "GSM11166", "GSM11167", "GSM11172", "GSM11173" ], "type": "protocol", "id": "GDS598_16" }, { "dataset_id": "GDS598", "description": "aortic banding", "sample_id": [ "GSM11180", "GSM11181", "GSM11184", "GSM11185", "GSM11188", "GSM11189", "GSM11192", "GSM11193", "GSM11194", "GSM11195" ], "type": "protocol", "id": "GDS598_17" }, { "dataset_id": "GDS598", "description": "aortic banding - sham", "sample_id": [ "GSM11178", "GSM11179", "GSM11182", "GSM11183", "GSM11186", "GSM11187", "GSM11190", "GSM11191" ], "type": "protocol", "id": "GDS598_18" }, { "dataset_id": "GDS598", "description": "infusion of angiotensin 2", "sample_id": [ "GSM11198", "GSM11199" ], "type": "protocol", "id": "GDS598_19" }, { "dataset_id": "GDS598", "description": "infusion of the thyroxin analogue", "sample_id": [ "GSM11200", "GSM11201" ], "type": "protocol", "id": "GDS598_20" }, { "dataset_id": "GDS598", "description": "infusion of saline", "sample_id": [ "GSM11196", "GSM11197" ], "type": "protocol", "id": "GDS598_21" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS598", "version": 1.0, "instances": "46", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS598.tab", "compression": "gz" } ], [ [ "GDS599.tab" ], { "title": "Burn injury: liver metabolic and inflammatory response", "description": "Temporal analysis of metabolic and inflammatory response to burn injury. Livers from male Sprague-Dawleys examined at 1, 4, 8, and 24 hours following 20% total burn surface area scald-burn injury.", "type": "Expression profiling by array", "pubmed_id": "15114001", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE802", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS599", "description": "0 hour", "sample_id": [ "GSM12623", "GSM12624" ], "type": "time", "id": "GDS599_1" }, { "dataset_id": "GDS599", "description": "1 hour", "sample_id": [ "GSM12625", "GSM12626" ], "type": "time", "id": "GDS599_2" }, { "dataset_id": "GDS599", "description": "4 hour", "sample_id": [ "GSM12627", "GSM12628" ], "type": "time", "id": "GDS599_3" }, { "dataset_id": "GDS599", "description": "8 hour", "sample_id": [ "GSM12629", "GSM12630" ], "type": "time", "id": "GDS599_4" }, { "dataset_id": "GDS599", "description": "24 hour", "sample_id": [ "GSM12631", "GSM12632" ], "type": "time", "id": "GDS599_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS599", "version": 1.0, "instances": "10", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS599.tab", "compression": "gz" } ], [ [ "GDS6.tab" ], { "title": "Germline development and function", "description": "Identification and kinetics of sperm-enriched, oocyte-enriched and germline-intrinsic patterns of gene expression. Identifies genes that participate in biological functions that make the germline unique.", "type": "Expression profiling by array", "pubmed_id": "11030340", "platform": "GPL14", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "13323", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "2", "sample_count": "29", "value_type": "log ratio", "reference_series": "GSE5", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS6", "description": "larval 2", "sample_id": [ "GSM460", "GSM461", "GSM462", "GSM464", "GSM463", "GSM465" ], "type": "development stage", "id": "GDS6_1" }, { "dataset_id": "GDS6", "description": "larval 3", "sample_id": [ "GSM445", "GSM447", "GSM449", "GSM451", "GSM453", "GSM455", "GSM459", "GSM466" ], "type": "development stage", "id": "GDS6_2" }, { "dataset_id": "GDS6", "description": "larval 4", "sample_id": [ "GSM446", "GSM448", "GSM450", "GSM452", "GSM454", "GSM456", "GSM457", "GSM458" ], "type": "development stage", "id": "GDS6_3" }, { "dataset_id": "GDS6", "description": "young adult", "sample_id": [ "GSM438", "GSM439", "GSM440", "GSM441", "GSM442", "GSM443", "GSM444" ], "type": "development stage", "id": "GDS6_4" }, { "dataset_id": "GDS6", "description": "wildtype", "sample_id": [ "GSM438", "GSM441", "GSM442", "GSM445", "GSM446", "GSM449", "GSM450", "GSM453", "GSM454", "GSM457", "GSM460", "GSM461", "GSM462", "GSM466" ], "type": "strain", "id": "GDS6_5" }, { "dataset_id": "GDS6", "description": "glp-4(bn2)", "sample_id": [ "GSM439", "GSM440", "GSM443", "GSM444", "GSM447", "GSM448", "GSM451", "GSM452", "GSM455", "GSM456", "GSM458", "GSM459", "GSM463", "GSM464", "GSM465" ], "type": "strain", "id": "GDS6_6" } ], "taxid": "6239", "genes": 13240, "aggregation_function": "mean", "name": "GDS6", "version": 1.0, "instances": "29", "variables": 13243, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6.tab", "compression": "gz" } ], [ [ "GDS60.tab" ], { "title": "Allergic response to ragweed in lung (U74Cv2)", "description": "Analysis of allergic response to an immunogenic protein of ragweed pollen in lung. Determination of the temporal relationship between gene expression and airway allergen challenge.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE483", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS60", "description": "control", "sample_id": [ "GSM1237", "GSM1243", "GSM1249", "GSM1255" ], "type": "agent", "id": "GDS60_1" }, { "dataset_id": "GDS60", "description": "allergen", "sample_id": [ "GSM1267", "GSM1273", "GSM1279" ], "type": "agent", "id": "GDS60_2" }, { "dataset_id": "GDS60", "description": "24 hour", "sample_id": [ "GSM1237", "GSM1243", "GSM1267" ], "type": "time", "id": "GDS60_3" }, { "dataset_id": "GDS60", "description": "72 hour", "sample_id": [ "GSM1249", "GSM1255", "GSM1273", "GSM1279" ], "type": "time", "id": "GDS60_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS60", "version": 1.0, "instances": "7", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS60.tab", "compression": "gz" } ], [ [ "GDS600.tab" ], { "title": "Deubiquitinating enzyme UBP10 inactivation", "description": "Comparison of ubp10 null mutant, sir4 null mutant, ubp10sir4 double null mutant, and the isogenic wild type strain W303-1A gives insight into mechanisms underlying deubiquitinating enzyme UBP10 function.", "type": "Expression profiling by array", "pubmed_id": "14623890", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE804", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS600", "description": "wild type", "sample_id": [ "GSM12633" ], "type": "strain", "id": "GDS600_1" }, { "dataset_id": "GDS600", "description": "ubp10 null mutant", "sample_id": [ "GSM12754" ], "type": "strain", "id": "GDS600_2" }, { "dataset_id": "GDS600", "description": "sir4 null mutant", "sample_id": [ "GSM12756" ], "type": "strain", "id": "GDS600_3" }, { "dataset_id": "GDS600", "description": "ubp10sir4 double null mutant", "sample_id": [ "GSM12755" ], "type": "strain", "id": "GDS600_4" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS600", "version": 1.0, "instances": "4", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS600.tab", "compression": "gz" } ], [ [ "GDS6000.tab" ], { "title": "High-fat diet effect on brown adipose tissue development", "description": "Analysis of interscapular brown adipose tissues from mice fed a high fat diet for up to 24 weeks. Results compared to those from epididymal white adipose tissues (GDS6247) in order to provide insight into the effect of high-fat diets on the development of brown and white adipose tissues.", "type": "Expression profiling by array", "pubmed_id": "25895476", "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "33", "value_type": "transformed count", "reference_series": "GSE64718", "order": "none", "update_date": "Jun 29 2016", "subsets": [ { "dataset_id": "GDS6000", "description": "week 0", "sample_id": [ "GSM1577825", "GSM1577826", "GSM1577827" ], "type": "time", "id": "GDS6000_1" }, { "dataset_id": "GDS6000", "description": "week 2", "sample_id": [ "GSM1577831", "GSM1577832", "GSM1577833", "GSM1577828", "GSM1577829", "GSM1577830" ], "type": "time", "id": "GDS6000_2" }, { "dataset_id": "GDS6000", "description": "week 4", "sample_id": [ "GSM1577837", "GSM1577838", "GSM1577839", "GSM1577834", "GSM1577835", "GSM1577836" ], "type": "time", "id": "GDS6000_3" }, { "dataset_id": "GDS6000", "description": "week 8", "sample_id": [ "GSM1577840", "GSM1577841", "GSM1577842", "GSM1577843", "GSM1577844", "GSM1577845" ], "type": "time", "id": "GDS6000_4" }, { "dataset_id": "GDS6000", "description": "week 20", "sample_id": [ "GSM1577849", "GSM1577850", "GSM1577851", "GSM1577846", "GSM1577847", "GSM1577848" ], "type": "time", "id": "GDS6000_5" }, { "dataset_id": "GDS6000", "description": "week 24", "sample_id": [ "GSM1577855", "GSM1577856", "GSM1577857", "GSM1577852", "GSM1577853", "GSM1577854" ], "type": "time", "id": "GDS6000_6" }, { "dataset_id": "GDS6000", "description": "high-fat diet fed", "sample_id": [ "GSM1577831", "GSM1577832", "GSM1577833", "GSM1577849", "GSM1577850", "GSM1577851", "GSM1577855", "GSM1577856", "GSM1577857", "GSM1577837", "GSM1577838", "GSM1577839", "GSM1577843", "GSM1577844", "GSM1577845" ], "type": "protocol", "id": "GDS6000_7" }, { "dataset_id": "GDS6000", "description": "normal-fat diet fed", "sample_id": [ "GSM1577825", "GSM1577826", "GSM1577827", "GSM1577828", "GSM1577829", "GSM1577830", "GSM1577846", "GSM1577847", "GSM1577848", "GSM1577852", "GSM1577853", "GSM1577854", "GSM1577834", "GSM1577835", "GSM1577836", "GSM1577840", "GSM1577841", "GSM1577842" ], "type": "protocol", "id": "GDS6000_8" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS6000", "version": 1.0, "instances": "33", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6000.tab", "compression": "gz" } ], [ [ "GDS6010.tab" ], { "title": "Influenza virus H5N1 infection of U251 astrocyte cell line: time course", "description": "Analysis of U251 astrocyte cells infected with the influenza H5N1 virus for up to 24 hours. Results provide insight into the immune response of astrocytes to H5N1 infection.", "type": "Expression profiling by array", "pubmed_id": "26008703", "platform": "GPL6480", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41108", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE66597", "order": "none", "update_date": "Jun 30 2016", "subsets": [ { "dataset_id": "GDS6010", "description": "hour 6", "sample_id": [ "GSM1625997", "GSM1625996", "GSM1625995", "GSM1626006", "GSM1626005", "GSM1626004" ], "type": "time", "id": "GDS6010_1" }, { "dataset_id": "GDS6010", "description": "hour 12", "sample_id": [ "GSM1626000", "GSM1625999", "GSM1625998", "GSM1626009", "GSM1626008", "GSM1626007" ], "type": "time", "id": "GDS6010_2" }, { "dataset_id": "GDS6010", "description": "hour 24", "sample_id": [ "GSM1626003", "GSM1626002", "GSM1626001", "GSM1626012", "GSM1626011", "GSM1626010" ], "type": "time", "id": "GDS6010_3" }, { "dataset_id": "GDS6010", "description": "H5N1 (MOI 1)", "sample_id": [ "GSM1626007", "GSM1626008", "GSM1626009", "GSM1626010", "GSM1626011", "GSM1626012", "GSM1626004", "GSM1626005", "GSM1626006" ], "type": "infection", "id": "GDS6010_4" }, { "dataset_id": "GDS6010", "description": "control", "sample_id": [ "GSM1625998", "GSM1625999", "GSM1626000", "GSM1626001", "GSM1626002", "GSM1626003", "GSM1625995", "GSM1625996", "GSM1625997" ], "type": "infection", "id": "GDS6010_5" } ], "taxid": "9606", "genes": 29816, "aggregation_function": "mean", "name": "GDS6010", "version": 1.0, "instances": "18", "variables": 29819, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6010.tab", "compression": "gz" } ], [ [ "GDS6016.tab" ], { "title": "Transcription factor engrailed-2 loss-of-function model of autism spectrum disorder: hippocampus", "description": "Analysis of hippocampal samples from engrailed-2 (En2) mutant adults. The En2-/- animals are a model for autism spectrum disorder (ASD). The hippocampus is a brain area profoundly affected in ASD patients. Results provide insight into molecular mechanisms underlying ASD-related neuropathology.", "type": "Expression profiling by array", "pubmed_id": "24355397", "platform": "GPL7202", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "41282", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE51612", "order": "none", "update_date": "Jan 12 2016", "subsets": [ { "dataset_id": "GDS6016", "description": "En2 wildtype", "sample_id": [ "GSM1249165", "GSM1249166", "GSM1249167" ], "type": "genotype/variation", "id": "GDS6016_1" }, { "dataset_id": "GDS6016", "description": "En2 knockout", "sample_id": [ "GSM1249168", "GSM1249169", "GSM1249170" ], "type": "genotype/variation", "id": "GDS6016_2" } ], "taxid": "10090", "genes": 27547, "aggregation_function": "mean", "name": "GDS6016", "version": 1.0, "instances": "6", "variables": 27549, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6016.tab", "compression": "gz" } ], [ [ "GDS602.tab" ], { "title": "X-ray induced cell death in embryos", "description": "Analysis of X-ray induced cell death in stage 9-11 (irradiation sensitive) and stage 13-15 embryos (irradiation resistant) provides insight into molecular mechanisms of irradiation induced apoptosis.", "type": "Expression profiling by array", "pubmed_id": "18410726", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1005", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS602", "description": "x-ray treated", "sample_id": [ "GSM15883", "GSM15887", "GSM15878", "GSM15880", "GSM15882", "GSM15888" ], "type": "protocol", "id": "GDS602_1" }, { "dataset_id": "GDS602", "description": "control", "sample_id": [ "GSM15877", "GSM15879", "GSM15881", "GSM15885", "GSM15884", "GSM15886" ], "type": "protocol", "id": "GDS602_2" }, { "dataset_id": "GDS602", "description": "stage 9-11", "sample_id": [ "GSM15877", "GSM15881", "GSM15885", "GSM15887", "GSM15882", "GSM15878" ], "type": "development stage", "id": "GDS602_3" }, { "dataset_id": "GDS602", "description": "stage 13-15", "sample_id": [ "GSM15879", "GSM15883", "GSM15880", "GSM15884", "GSM15886", "GSM15888" ], "type": "development stage", "id": "GDS602_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS602", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS602.tab", "compression": "gz" } ], [ [ "GDS604.tab" ], { "title": "Neurofibromatosis and neurodevelopment", "description": "Examination of hippocampus from 10 to 32 day old NF1 heterozygotes. NF1+/- mice develop learning and memory difficulties mimicking cognitive deficits in human neurofibromatosis.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1482", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS604", "description": "NF1+/-", "sample_id": [ "GSM25128", "GSM25132", "GSM25136", "GSM25144", "GSM25127", "GSM25137", "GSM25140", "GSM25141", "GSM25121", "GSM25146", "GSM25125", "GSM25131", "GSM25138", "GSM25142", "GSM25147" ], "type": "strain", "id": "GDS604_1" }, { "dataset_id": "GDS604", "description": "wild type", "sample_id": [ "GSM24816", "GSM25119", "GSM25120", "GSM25122", "GSM25123", "GSM25124", "GSM25126", "GSM25129", "GSM25130", "GSM25133", "GSM25134", "GSM25135", "GSM25139", "GSM25143", "GSM25145" ], "type": "strain", "id": "GDS604_2" }, { "dataset_id": "GDS604", "description": "10 d", "sample_id": [ "GSM24816", "GSM25119", "GSM25128", "GSM25130", "GSM25132", "GSM25136", "GSM25144" ], "type": "age", "id": "GDS604_3" }, { "dataset_id": "GDS604", "description": "15 d", "sample_id": [ "GSM25122", "GSM25127", "GSM25133", "GSM25134", "GSM25135", "GSM25137", "GSM25140", "GSM25141" ], "type": "age", "id": "GDS604_4" }, { "dataset_id": "GDS604", "description": "18 d", "sample_id": [ "GSM25120", "GSM25121", "GSM25126", "GSM25146" ], "type": "age", "id": "GDS604_5" }, { "dataset_id": "GDS604", "description": "20 d", "sample_id": [ "GSM25124", "GSM25125", "GSM25131", "GSM25139" ], "type": "age", "id": "GDS604_6" }, { "dataset_id": "GDS604", "description": "28 d", "sample_id": [ "GSM25123", "GSM25138", "GSM25142", "GSM25143" ], "type": "age", "id": "GDS604_7" }, { "dataset_id": "GDS604", "description": "32 d", "sample_id": [ "GSM25129", "GSM25145", "GSM25147" ], "type": "age", "id": "GDS604_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS604", "version": 1.0, "instances": "30", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS604.tab", "compression": "gz" } ], [ [ "GDS605.tab" ], { "title": "Spermatogenesis and testis development time course (MG-U74A)", "description": "Spermatogenesis time course generated from BL/6-129 testis collected from birth through adulthood. Provides insight into genes implicated in maturation, maintenance, and function of testis and the integrated process of spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "15028632", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE926", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS605", "description": "day 0", "sample_id": [ "GSM13803", "GSM13836" ], "type": "age", "id": "GDS605_1" }, { "dataset_id": "GDS605", "description": "day 3", "sample_id": [ "GSM13810", "GSM13841" ], "type": "age", "id": "GDS605_2" }, { "dataset_id": "GDS605", "description": "day 6", "sample_id": [ "GSM13814", "GSM13845" ], "type": "age", "id": "GDS605_3" }, { "dataset_id": "GDS605", "description": "day 8", "sample_id": [ "GSM13815", "GSM13846" ], "type": "age", "id": "GDS605_4" }, { "dataset_id": "GDS605", "description": "day 10", "sample_id": [ "GSM13806", "GSM13837" ], "type": "age", "id": "GDS605_5" }, { "dataset_id": "GDS605", "description": "day 14", "sample_id": [ "GSM13807", "GSM13838" ], "type": "age", "id": "GDS605_6" }, { "dataset_id": "GDS605", "description": "day 18", "sample_id": [ "GSM13808", "GSM13839" ], "type": "age", "id": "GDS605_7" }, { "dataset_id": "GDS605", "description": "day 20", "sample_id": [ "GSM13809", "GSM13840" ], "type": "age", "id": "GDS605_8" }, { "dataset_id": "GDS605", "description": "day 30", "sample_id": [ "GSM13811", "GSM13842" ], "type": "age", "id": "GDS605_9" }, { "dataset_id": "GDS605", "description": "day 35", "sample_id": [ "GSM13812", "GSM13843" ], "type": "age", "id": "GDS605_10" }, { "dataset_id": "GDS605", "description": "day 56", "sample_id": [ "GSM13813", "GSM13844" ], "type": "age", "id": "GDS605_11" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS605", "version": 1.0, "instances": "22", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS605.tab", "compression": "gz" } ], [ [ "GDS606.tab" ], { "title": "Spermatogenesis and testis development time course (MG-U74B)", "description": "Spermatogenesis time course generated from BL/6-129 testis collected from birth through adulthood. Provides insight into genes implicated in maturation, maintenance, and function of testis and the integrated process of spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "15028632", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE926", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS606", "description": "day 0", "sample_id": [ "GSM13804", "GSM13847" ], "type": "age", "id": "GDS606_1" }, { "dataset_id": "GDS606", "description": "day 3", "sample_id": [ "GSM13820", "GSM13852" ], "type": "age", "id": "GDS606_2" }, { "dataset_id": "GDS606", "description": "day 6", "sample_id": [ "GSM13824", "GSM13856" ], "type": "age", "id": "GDS606_3" }, { "dataset_id": "GDS606", "description": "day 8", "sample_id": [ "GSM13825", "GSM13857" ], "type": "age", "id": "GDS606_4" }, { "dataset_id": "GDS606", "description": "day 10", "sample_id": [ "GSM13816", "GSM13848" ], "type": "age", "id": "GDS606_5" }, { "dataset_id": "GDS606", "description": "day 14", "sample_id": [ "GSM13817", "GSM13849" ], "type": "age", "id": "GDS606_6" }, { "dataset_id": "GDS606", "description": "day 18", "sample_id": [ "GSM13818", "GSM13850" ], "type": "age", "id": "GDS606_7" }, { "dataset_id": "GDS606", "description": "day 20", "sample_id": [ "GSM13819", "GSM13851" ], "type": "age", "id": "GDS606_8" }, { "dataset_id": "GDS606", "description": "day 30", "sample_id": [ "GSM13821", "GSM13853" ], "type": "age", "id": "GDS606_9" }, { "dataset_id": "GDS606", "description": "day 35", "sample_id": [ "GSM13822", "GSM13854" ], "type": "age", "id": "GDS606_10" }, { "dataset_id": "GDS606", "description": "day 56", "sample_id": [ "GSM13823", "GSM13855" ], "type": "age", "id": "GDS606_11" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS606", "version": 1.0, "instances": "22", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS606.tab", "compression": "gz" } ], [ [ "GDS6063.tab" ], { "title": "Influenza A effect on plasmacytoid dendritic cells", "description": "Analysis of primary plasmacytoid dendritic cells (pDC) exposed to influenza A for 8 hours ex vivo. pDCs are vital to antiviral defense, directing immune responses via secretion of interferon-alpha. Results provide insight into the regulation of the response of pDC to viral pathogens.", "type": "Expression profiling by array", "pubmed_id": "26826244", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE68849", "order": "none", "update_date": "Jun 30 2016", "subsets": [ { "dataset_id": "GDS6063", "description": "influenza A", "sample_id": [ "GSM1684096", "GSM1684098", "GSM1684100", "GSM1684102", "GSM1684104" ], "type": "infection", "id": "GDS6063_1" }, { "dataset_id": "GDS6063", "description": "no virus control", "sample_id": [ "GSM1684095", "GSM1684097", "GSM1684099", "GSM1684101", "GSM1684103" ], "type": "infection", "id": "GDS6063_2" }, { "dataset_id": "GDS6063", "description": "donor 1", "sample_id": [ "GSM1684095", "GSM1684096" ], "type": "individual", "id": "GDS6063_3" }, { "dataset_id": "GDS6063", "description": "donor 2", "sample_id": [ "GSM1684097", "GSM1684098" ], "type": "individual", "id": "GDS6063_4" }, { "dataset_id": "GDS6063", "description": "donor 3", "sample_id": [ "GSM1684099", "GSM1684100" ], "type": "individual", "id": "GDS6063_5" }, { "dataset_id": "GDS6063", "description": "donor 4", "sample_id": [ "GSM1684101", "GSM1684102" ], "type": "individual", "id": "GDS6063_6" }, { "dataset_id": "GDS6063", "description": "donor 5", "sample_id": [ "GSM1684103", "GSM1684104" ], "type": "individual", "id": "GDS6063_7" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS6063", "version": 1.0, "instances": "10", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6063.tab", "compression": "gz" } ], [ [ "GDS6064.tab" ], { "title": "Arthritic tarsal joints induced by collagen: time course", "description": "Analysis of tarsal joints for up to 4 weeks following treatment with collagen to induce arthritis. Collagen induced arthritis is a model for rheumatoid arthritis. Results provide insight into the molecular events underlying the inflammation and bone remodeling that occurs in inflammatory arthritis.", "type": "Expression profiling by array", "pubmed_id": "25889670", "platform": "GPL6246", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35557", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE61140", "order": "none", "update_date": "Jul 01 2016", "subsets": [ { "dataset_id": "GDS6064", "description": "arthritis in 0-3 days", "sample_id": [ "GSM1498289", "GSM1498290", "GSM1498291" ], "type": "time", "id": "GDS6064_1" }, { "dataset_id": "GDS6064", "description": "arthritis in 1-2 weeks", "sample_id": [ "GSM1498292", "GSM1498293", "GSM1498294" ], "type": "time", "id": "GDS6064_2" }, { "dataset_id": "GDS6064", "description": "arthritis in 3-4 weeks", "sample_id": [ "GSM1498295", "GSM1498296", "GSM1498297" ], "type": "time", "id": "GDS6064_3" }, { "dataset_id": "GDS6064", "description": "declining arthritis > 2 weeks", "sample_id": [ "GSM1498298", "GSM1498299", "GSM1498300" ], "type": "time", "id": "GDS6064_4" }, { "dataset_id": "GDS6064", "description": "non-induced control", "sample_id": [ "GSM1498301", "GSM1498302", "GSM1498303" ], "type": "time", "id": "GDS6064_5" } ], "taxid": "10090", "genes": 25470, "aggregation_function": "mean", "name": "GDS6064", "version": 1.0, "instances": "15", "variables": 25472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6064.tab", "compression": "gz" } ], [ [ "GDS607.tab" ], { "title": "Spermatogenesis and testis development time course (MG-U74C)", "description": "Spermatogenesis time course generated from BL/6-129 testis collected from birth through adulthood. Provides insight into genes implicated in maturation, maintenance, and function of testis and the integrated process of spermatogenesis.", "type": "Expression profiling by array", "pubmed_id": "15028632", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE926", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS607", "description": "day 0", "sample_id": [ "GSM13805", "GSM13858" ], "type": "age", "id": "GDS607_1" }, { "dataset_id": "GDS607", "description": "day 3", "sample_id": [ "GSM13830", "GSM13863" ], "type": "age", "id": "GDS607_2" }, { "dataset_id": "GDS607", "description": "day 6", "sample_id": [ "GSM13834", "GSM13867" ], "type": "age", "id": "GDS607_3" }, { "dataset_id": "GDS607", "description": "day 8", "sample_id": [ "GSM13835", "GSM13868" ], "type": "age", "id": "GDS607_4" }, { "dataset_id": "GDS607", "description": "day 10", "sample_id": [ "GSM13826", "GSM13859" ], "type": "age", "id": "GDS607_5" }, { "dataset_id": "GDS607", "description": "day 14", "sample_id": [ "GSM13827", "GSM13860" ], "type": "age", "id": "GDS607_6" }, { "dataset_id": "GDS607", "description": "day 18", "sample_id": [ "GSM13828", "GSM13861" ], "type": "age", "id": "GDS607_7" }, { "dataset_id": "GDS607", "description": "day 20", "sample_id": [ "GSM13829", "GSM13862" ], "type": "age", "id": "GDS607_8" }, { "dataset_id": "GDS607", "description": "day 30", "sample_id": [ "GSM13831", "GSM13864" ], "type": "age", "id": "GDS607_9" }, { "dataset_id": "GDS607", "description": "day 35", "sample_id": [ "GSM13832", "GSM13865" ], "type": "age", "id": "GDS607_10" }, { "dataset_id": "GDS607", "description": "day 56", "sample_id": [ "GSM13833", "GSM13866" ], "type": "age", "id": "GDS607_11" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS607", "version": 1.0, "instances": "22", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS607.tab", "compression": "gz" } ], [ [ "GDS608.tab" ], { "title": "Filamentous-form growth on solid media", "description": "Temporal analysis of wild type diploid cells shifted from yeast-form growth in SHAD liquid (plentiful glucose and ammonium) to filamentous-form growth on SLAD agar (low ammonium). Filamentous-form cells collected hourly for 10 hours.", "type": "Expression profiling by array", "pubmed_id": "14993204", "platform": "GPL507", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted oligonucleotide", "feature_count": "6303", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE679", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS608", "description": "1 h", "sample_id": [ "GSM10462" ], "type": "time", "id": "GDS608_1" }, { "dataset_id": "GDS608", "description": "2 h", "sample_id": [ "GSM10463" ], "type": "time", "id": "GDS608_2" }, { "dataset_id": "GDS608", "description": "3 h", "sample_id": [ "GSM10464" ], "type": "time", "id": "GDS608_3" }, { "dataset_id": "GDS608", "description": "4 h", "sample_id": [ "GSM10465" ], "type": "time", "id": "GDS608_4" }, { "dataset_id": "GDS608", "description": "5 h", "sample_id": [ "GSM10466" ], "type": "time", "id": "GDS608_5" }, { "dataset_id": "GDS608", "description": "6 h", "sample_id": [ "GSM10467" ], "type": "time", "id": "GDS608_6" }, { "dataset_id": "GDS608", "description": "7 h", "sample_id": [ "GSM10468" ], "type": "time", "id": "GDS608_7" }, { "dataset_id": "GDS608", "description": "8 h", "sample_id": [ "GSM10469" ], "type": "time", "id": "GDS608_8" }, { "dataset_id": "GDS608", "description": "9 h", "sample_id": [ "GSM10470" ], "type": "time", "id": "GDS608_9" }, { "dataset_id": "GDS608", "description": "10 h", "sample_id": [ "GSM10471" ], "type": "time", "id": "GDS608_10" } ], "taxid": "4932", "genes": 6280, "aggregation_function": "mean", "name": "GDS608", "version": 1.0, "instances": "10", "variables": 6282, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS608.tab", "compression": "gz" } ], [ [ "GDS6082.tab" ], { "title": "Sendai virus infection effect on monocytic cell line: dose response", "description": "Analysis of U937 monocytic cells infected at multiplicities of infection of 0.0002 and 0.02 with the Sendai virus. Results provide insight into the differences between the innate immune response of cells infected with a low and high concentration of virus.", "type": "Expression profiling by array", "pubmed_id": "26355085", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE67198", "order": "none", "update_date": "Jul 01 2016", "subsets": [ { "dataset_id": "GDS6082", "description": "150 HA u/mL (MOI of 0.02)", "sample_id": [ "GSM1642348", "GSM1642345", "GSM1642342", "GSM1642340" ], "type": "dose", "id": "GDS6082_1" }, { "dataset_id": "GDS6082", "description": "1.5 HA u/mL (MOI of 0.0002)", "sample_id": [ "GSM1642339", "GSM1642347", "GSM1642344" ], "type": "dose", "id": "GDS6082_2" }, { "dataset_id": "GDS6082", "description": "control", "sample_id": [ "GSM1642349", "GSM1642346", "GSM1642343", "GSM1642341" ], "type": "dose", "id": "GDS6082_3" }, { "dataset_id": "GDS6082", "description": "Sendai virus infected", "sample_id": [ "GSM1642339", "GSM1642347", "GSM1642344", "GSM1642348", "GSM1642345", "GSM1642342", "GSM1642340" ], "type": "infection", "id": "GDS6082_4" }, { "dataset_id": "GDS6082", "description": "uninfected", "sample_id": [ "GSM1642349", "GSM1642346", "GSM1642343", "GSM1642341" ], "type": "infection", "id": "GDS6082_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS6082", "version": 1.0, "instances": "11", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6082.tab", "compression": "gz" } ], [ [ "GDS6083.tab" ], { "title": "Chronic lymphocytic leukemia cells response to the neutralization of inhibitor of apoptosis proteins", "description": "Analysis of chronic lymphocytic leukemia (CLL) cells treated with BV6, a Smac mimetic. CLL is characterized by B-lymphocyte accumulation, which is attributed to defective cell death. Inhibitor of apoptosis (IAP) proteins are highly expressed in CLL cells. Smac binds to and inhibits IAP proteins.", "type": "Expression profiling by array", "pubmed_id": "26096065", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE62533", "order": "none", "update_date": "Jul 02 2016", "subsets": [ { "dataset_id": "GDS6083", "description": "BV6", "sample_id": [ "GSM1528447", "GSM1528449", "GSM1528451", "GSM1528453", "GSM1528455", "GSM1528457" ], "type": "agent", "id": "GDS6083_1" }, { "dataset_id": "GDS6083", "description": "DMSO control", "sample_id": [ "GSM1528448", "GSM1528450", "GSM1528452", "GSM1528454", "GSM1528456", "GSM1528458" ], "type": "agent", "id": "GDS6083_2" }, { "dataset_id": "GDS6083", "description": "hour 4", "sample_id": [ "GSM1528449", "GSM1528455", "GSM1528457", "GSM1528450", "GSM1528456", "GSM1528458" ], "type": "time", "id": "GDS6083_3" }, { "dataset_id": "GDS6083", "description": "hour 20", "sample_id": [ "GSM1528447", "GSM1528451", "GSM1528453", "GSM1528448", "GSM1528452", "GSM1528454" ], "type": "time", "id": "GDS6083_4" }, { "dataset_id": "GDS6083", "description": "patient 23", "sample_id": [ "GSM1528447", "GSM1528448", "GSM1528449", "GSM1528450" ], "type": "individual", "id": "GDS6083_5" }, { "dataset_id": "GDS6083", "description": "patient 44", "sample_id": [ "GSM1528451", "GSM1528452" ], "type": "individual", "id": "GDS6083_6" }, { "dataset_id": "GDS6083", "description": "patient 50", "sample_id": [ "GSM1528453", "GSM1528454", "GSM1528455", "GSM1528456" ], "type": "individual", "id": "GDS6083_7" }, { "dataset_id": "GDS6083", "description": "patient 51", "sample_id": [ "GSM1528457", "GSM1528458" ], "type": "individual", "id": "GDS6083_8" }, { "dataset_id": "GDS6083", "description": "karyotype: normal", "sample_id": [ "GSM1528447", "GSM1528448", "GSM1528449", "GSM1528450" ], "type": "genotype/variation", "id": "GDS6083_9" }, { "dataset_id": "GDS6083", "description": "karyotype: 13q- bidel", "sample_id": [ "GSM1528451", "GSM1528452" ], "type": "genotype/variation", "id": "GDS6083_10" }, { "dataset_id": "GDS6083", "description": "karyotype: 13q-", "sample_id": [ "GSM1528453", "GSM1528454", "GSM1528455", "GSM1528456" ], "type": "genotype/variation", "id": "GDS6083_11" }, { "dataset_id": "GDS6083", "description": "karyotype: 13q-, 14q-", "sample_id": [ "GSM1528457", "GSM1528458" ], "type": "genotype/variation", "id": "GDS6083_12" }, { "dataset_id": "GDS6083", "description": "tp53 mutation: MUT", "sample_id": [ "GSM1528447", "GSM1528448", "GSM1528449", "GSM1528450" ], "type": "other", "id": "GDS6083_13" }, { "dataset_id": "GDS6083", "description": "tp53 mutation: WT", "sample_id": [ "GSM1528451", "GSM1528452", "GSM1528453", "GSM1528454", "GSM1528455", "GSM1528456", "GSM1528457", "GSM1528458" ], "type": "other", "id": "GDS6083_14" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS6083", "version": 1.0, "instances": "12", "variables": 30812, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6083.tab", "compression": "gz" } ], [ [ "GDS609.tab" ], { "title": "Duchenne muscular dystrophy (II) (HG-U95B)", "description": "Search for modifying factors and pathogenic pathways involved in Duchenne muscular dystrophy (DMD). Quadricep skeletal muscle biopsies from DMD patients and unaffected control patients examined.", "type": "Expression profiling by array", "pubmed_id": "12698323", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1007", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS609", "description": "normal", "sample_id": [ "GSM15912", "GSM15913", "GSM15914", "GSM15915", "GSM15916", "GSM15917", "GSM15918", "GSM15919", "GSM15920", "GSM15921", "GSM15922" ], "type": "disease state", "id": "GDS609_1" }, { "dataset_id": "GDS609", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM15923", "GSM15924", "GSM15925", "GSM15926", "GSM15927", "GSM15928", "GSM15929", "GSM15930", "GSM15931", "GSM15932" ], "type": "disease state", "id": "GDS609_2" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS609", "version": 1.0, "instances": "21", "variables": 10311, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS609.tab", "compression": "gz" } ], [ [ "GDS61.tab" ], { "title": "Lung hypertension recovery (U74Cv2)", "description": "Analysis of vascular remodeling following pulmonary hypertension. Lungs of normoxic and hypoxic treated animals analyzed. Hypoxia induces vasoconstriction then hypertrophy/hyperplasia of pulmonary vascular smooth muscle and endothelial cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE482", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS61", "description": "normoxic", "sample_id": [ "GSM1228", "GSM1231" ], "type": "protocol", "id": "GDS61_1" }, { "dataset_id": "GDS61", "description": "hypoxic", "sample_id": [ "GSM1217", "GSM1220", "GSM4173", "GSM4176", "GSM1223", "GSM1226", "GSM4179", "GSM4182" ], "type": "protocol", "id": "GDS61_2" }, { "dataset_id": "GDS61", "description": "0 hour", "sample_id": [ "GSM1228", "GSM1231" ], "type": "time", "id": "GDS61_3" }, { "dataset_id": "GDS61", "description": "10 hour", "sample_id": [ "GSM1217", "GSM1220" ], "type": "time", "id": "GDS61_4" }, { "dataset_id": "GDS61", "description": "2 day", "sample_id": [ "GSM4173", "GSM4176" ], "type": "time", "id": "GDS61_5" }, { "dataset_id": "GDS61", "description": "4 day", "sample_id": [ "GSM1223", "GSM1226" ], "type": "time", "id": "GDS61_6" }, { "dataset_id": "GDS61", "description": "6 day", "sample_id": [ "GSM4179", "GSM4182" ], "type": "time", "id": "GDS61_7" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS61", "version": 1.0, "instances": "10", "variables": 9979, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS61.tab", "compression": "gz" } ], [ [ "GDS610.tab" ], { "title": "Duchenne muscular dystrophy (II) (HG-U95C)", "description": "Search for modifying factors and pathogenic pathways involved in Duchenne muscular dystrophy (DMD). Quadricep skeletal muscle biopsies from DMD patients and unaffected control patients examined.", "type": "Expression profiling by array", "pubmed_id": "12698323", "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE1007", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS610", "description": "normal", "sample_id": [ "GSM15976", "GSM15977", "GSM15978", "GSM15979", "GSM15980", "GSM15981", "GSM15982", "GSM15983", "GSM16212", "GSM16213", "GSM16214" ], "type": "disease state", "id": "GDS610_1" }, { "dataset_id": "GDS610", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM16215", "GSM16216", "GSM16217", "GSM16218", "GSM16219", "GSM16220", "GSM16221", "GSM16222", "GSM16223", "GSM16224", "GSM16225" ], "type": "disease state", "id": "GDS610_2" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS610", "version": 1.0, "instances": "22", "variables": 10624, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS610.tab", "compression": "gz" } ], [ [ "GDS6100.tab" ], { "title": "MicroRNA-135b overexpression effect on prostate cancer cell line: time course", "description": "Analysis of LNCaP prostate cancer (PCa) cells overexpressing miRNA-135b for up to 36 hours. LNCaP cells express the androgen receptor (AR). MiRNA-135b overexpression in AR+ PCa cells results in slower growth compared to AR knockdown. Results provide insight into the basis of this slower growth.", "type": "Expression profiling by array", "pubmed_id": "25907805", "platform": "GPL10558", "platform_organism": "Homo sapiens", "platform_technology_type": "oligonucleotide beads", "feature_count": "48107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "transformed count", "reference_series": "GSE57820", "order": "none", "update_date": "Jul 02 2016", "subsets": [ { "dataset_id": "GDS6100", "description": "miRNA135b transfected", "sample_id": [ "GSM1394594", "GSM1394595", "GSM1394596", "GSM1394597", "GSM1394598", "GSM1394599" ], "type": "protocol", "id": "GDS6100_1" }, { "dataset_id": "GDS6100", "description": "scambled transfected", "sample_id": [ "GSM1394600", "GSM1394601", "GSM1394602", "GSM1394603", "GSM1394604", "GSM1394605" ], "type": "protocol", "id": "GDS6100_2" }, { "dataset_id": "GDS6100", "description": "hour 12", "sample_id": [ "GSM1394594", "GSM1394595", "GSM1394600", "GSM1394601" ], "type": "time", "id": "GDS6100_3" }, { "dataset_id": "GDS6100", "description": "hour 24", "sample_id": [ "GSM1394596", "GSM1394597", "GSM1394602", "GSM1394603" ], "type": "time", "id": "GDS6100_4" }, { "dataset_id": "GDS6100", "description": "hour 36", "sample_id": [ "GSM1394598", "GSM1394599", "GSM1394604", "GSM1394605" ], "type": "time", "id": "GDS6100_5" } ], "taxid": "9606", "genes": 37606, "aggregation_function": "mean", "name": "GDS6100", "version": 1.0, "instances": "12", "variables": 37609, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6100.tab", "compression": "gz" } ], [ [ "GDS611.tab" ], { "title": "Duchenne muscular dystrophy (II) (HG-U95D)", "description": "Search for modifying factors and pathogenic pathways involved in Duchenne muscular dystrophy (DMD). Quadricep skeletal muscle biopsies from DMD patients and unaffected control patients examined.", "type": "Expression profiling by array", "pubmed_id": "12698323", "platform": "GPL94", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12644", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE1007", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS611", "description": "normal", "sample_id": [ "GSM16226", "GSM16227", "GSM16228", "GSM16229", "GSM16230", "GSM16231", "GSM16232", "GSM16233", "GSM16234", "GSM16235", "GSM16236" ], "type": "disease state", "id": "GDS611_1" }, { "dataset_id": "GDS611", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM16237", "GSM16244", "GSM16245", "GSM16249", "GSM16250", "GSM16254", "GSM16255", "GSM16256", "GSM16257", "GSM16258", "GSM16259" ], "type": "disease state", "id": "GDS611_2" } ], "taxid": "9606", "genes": 11408, "aggregation_function": "mean", "name": "GDS611", "version": 1.0, "instances": "22", "variables": 11410, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS611.tab", "compression": "gz" } ], [ [ "GDS612.tab" ], { "title": "Duchenne muscular dystrophy (II) (HG-U95E)", "description": "Search for modifying factors and pathogenic pathways involved in Duchenne muscular dystrophy (DMD). Quadricep skeletal muscle biopsies from DMD patients and unaffected control patients examined.", "type": "Expression profiling by array", "pubmed_id": "12698323", "platform": "GPL95", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12639", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1007", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS612", "description": "normal", "sample_id": [ "GSM16287", "GSM16288", "GSM16289", "GSM16290", "GSM16292", "GSM16293", "GSM16294", "GSM16295", "GSM16296", "GSM16297", "GSM16298" ], "type": "disease state", "id": "GDS612_1" }, { "dataset_id": "GDS612", "description": "Duchenne muscular dystrophy", "sample_id": [ "GSM16299", "GSM16301", "GSM16302", "GSM16303", "GSM16304", "GSM16305", "GSM16306", "GSM16307", "GSM16308", "GSM16309" ], "type": "disease state", "id": "GDS612_2" } ], "taxid": "9606", "genes": 10350, "aggregation_function": "mean", "name": "GDS612", "version": 1.0, "instances": "21", "variables": 10352, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS612.tab", "compression": "gz" } ], [ [ "GDS614.tab" ], { "title": "Dystrophin-deficient mdx extraocular muscle development time course", "description": "Analysis of extraocular muscle (EOM) from dystrophin-deficient mdx mice, a Duchenne muscular dystrophy (DMD) model. Postnatal ages 14, 28, 56, and 112 days examined. EOM is unaffected in DMD, so results provide insight into mdx EOM protective mechanisms.", "type": "Expression profiling by array", "pubmed_id": [ "12874102", "12670877" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1008", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS614", "description": "mdx", "sample_id": [ "GSM15775", "GSM15776", "GSM15777", "GSM15845", "GSM15846", "GSM15847", "GSM15851", "GSM15852", "GSM15853", "GSM15857", "GSM15858", "GSM15859" ], "type": "strain", "id": "GDS614_1" }, { "dataset_id": "GDS614", "description": "wild type", "sample_id": [ "GSM15767", "GSM15771", "GSM15774", "GSM15778", "GSM15848", "GSM15849", "GSM15850", "GSM15854", "GSM15855", "GSM15856", "GSM15940", "GSM15941" ], "type": "strain", "id": "GDS614_2" }, { "dataset_id": "GDS614", "description": "day 14", "sample_id": [ "GSM15767", "GSM15771", "GSM15774", "GSM15775", "GSM15776", "GSM15777" ], "type": "age", "id": "GDS614_3" }, { "dataset_id": "GDS614", "description": "day 28", "sample_id": [ "GSM15778", "GSM15845", "GSM15846", "GSM15847", "GSM15940", "GSM15941" ], "type": "age", "id": "GDS614_4" }, { "dataset_id": "GDS614", "description": "day 56", "sample_id": [ "GSM15848", "GSM15849", "GSM15850", "GSM15851", "GSM15852", "GSM15853" ], "type": "age", "id": "GDS614_5" }, { "dataset_id": "GDS614", "description": "day 112", "sample_id": [ "GSM15854", "GSM15855", "GSM15856", "GSM15857", "GSM15858", "GSM15859" ], "type": "age", "id": "GDS614_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS614", "version": 1.0, "instances": "24", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS614.tab", "compression": "gz" } ], [ [ "GDS615.tab" ], { "title": "Cerebral cortex regional expression", "description": "Analysis of medial, dorsal, lateral, rostral, and occipital regions from strain ICR embryo day 16.5 cerebral cortex provides insight into molecular mechanisms of neocortical area and layer formation.", "type": "Expression profiling by array", "pubmed_id": "15142957", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE929", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS615", "description": "medial cortex", "sample_id": [ "GSM14591", "GSM14592" ], "type": "tissue", "id": "GDS615_1" }, { "dataset_id": "GDS615", "description": "dorsal cortex", "sample_id": [ "GSM14593", "GSM14594" ], "type": "tissue", "id": "GDS615_2" }, { "dataset_id": "GDS615", "description": "ventral cortex", "sample_id": [ "GSM14595", "GSM14596" ], "type": "tissue", "id": "GDS615_3" }, { "dataset_id": "GDS615", "description": "rostral cortex", "sample_id": [ "GSM14597", "GSM14598" ], "type": "tissue", "id": "GDS615_4" }, { "dataset_id": "GDS615", "description": "occipital cortex", "sample_id": [ "GSM14599", "GSM14600" ], "type": "tissue", "id": "GDS615_5" }, { "dataset_id": "GDS615", "description": "hemisphere cortex", "sample_id": [ "GSM14601", "GSM14602" ], "type": "tissue", "id": "GDS615_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS615", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS615.tab", "compression": "gz" } ], [ [ "GDS617.tab" ], { "title": "Rapid alkalinization factor overexpression", "description": "Analysis of the effect of overexpression of polypeptide hormone rapid alkalinization factor RALF1-1 in 1 week old seedlings. RALF has role in regulating growth and development.", "type": "Expression profiling by array", "pubmed_id": "24620000", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE641", "order": "none", "update_date": "Sep 12 2014", "subsets": [ { "dataset_id": "GDS617", "description": "35S.AtRALF1-1", "sample_id": [ "GSM9918", "GSM9919" ], "type": "genotype/variation", "id": "GDS617_1" }, { "dataset_id": "GDS617", "description": "wild type", "sample_id": [ "GSM9916", "GSM9917" ], "type": "genotype/variation", "id": "GDS617_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS617", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS617.tab", "compression": "gz" } ], [ [ "GDS6176.tab" ], { "title": "Caspase-1 deficiency effect on lipid-loaded intestines", "description": "Analysis of the epithelial layer of intestine from Casp1-null, C57BL/6 males 2 hours after an oral lipid bolus. Caspase-1 activates the proinflammatory cytokines IL-1\u03b2 and IL-18. These results, together with those from GDS4922, provide insight into the role of caspase-1 in lipid metabolism.", "type": "Expression profiling by array", "pubmed_id": "23160218", "platform": "GPL11533", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "35556", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "transformed count", "reference_series": "GSE32515", "order": "none", "update_date": "Apr 11 2016", "subsets": [ { "dataset_id": "GDS6176", "description": "Caspase-1 null", "sample_id": [ "GSM805240", "GSM805241", "GSM805244", "GSM805245", "GSM805246", "GSM805249", "GSM805250", "GSM805251", "GSM805252" ], "type": "genotype/variation", "id": "GDS6176_1" }, { "dataset_id": "GDS6176", "description": "wild type", "sample_id": [ "GSM805237", "GSM805238", "GSM805239", "GSM805242", "GSM805243", "GSM805247", "GSM805248", "GSM805253", "GSM805254" ], "type": "genotype/variation", "id": "GDS6176_2" }, { "dataset_id": "GDS6176", "description": "duodenum", "sample_id": [ "GSM805240", "GSM805241", "GSM805252", "GSM805237", "GSM805238", "GSM805239" ], "type": "tissue", "id": "GDS6176_3" }, { "dataset_id": "GDS6176", "description": "ileum", "sample_id": [ "GSM805249", "GSM805250", "GSM805251", "GSM805247", "GSM805248", "GSM805254" ], "type": "tissue", "id": "GDS6176_4" }, { "dataset_id": "GDS6176", "description": "jejunum", "sample_id": [ "GSM805244", "GSM805245", "GSM805246", "GSM805242", "GSM805243", "GSM805253" ], "type": "tissue", "id": "GDS6176_5" } ], "taxid": "10090", "genes": 25179, "aggregation_function": "mean", "name": "GDS6176", "version": 1.0, "instances": "18", "variables": 25182, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6176.tab", "compression": "gz" } ], [ [ "GDS6177.tab" ], { "title": "Acute alcohol consumption effect on whole blood (control group): time course", "description": "Analysis of blood from subjects administered orange juice w/o alcohol. Blood collected at time points corresponding to collection times for the alcohol group in GDS4938. These results, together with those from GDS4938, provide insight into molecular response of blood during acute ethanol exposure.", "type": "Expression profiling by array", "pubmed_id": "23883607", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "transformed count", "reference_series": "GSE20489", "order": "none", "update_date": "Apr 13 2016", "subsets": [ { "dataset_id": "GDS6177", "description": "S51", "sample_id": [ "GSM514766", "GSM514767", "GSM514768", "GSM514769", "GSM514770" ], "type": "individual", "id": "GDS6177_1" }, { "dataset_id": "GDS6177", "description": "S52", "sample_id": [ "GSM514771", "GSM514772", "GSM514773", "GSM514774", "GSM514775" ], "type": "individual", "id": "GDS6177_2" }, { "dataset_id": "GDS6177", "description": "S53", "sample_id": [ "GSM514776", "GSM514777", "GSM514778", "GSM514779", "GSM514780" ], "type": "individual", "id": "GDS6177_3" }, { "dataset_id": "GDS6177", "description": "S54", "sample_id": [ "GSM514781", "GSM514782", "GSM514783", "GSM514784", "GSM514785" ], "type": "individual", "id": "GDS6177_4" }, { "dataset_id": "GDS6177", "description": "S56", "sample_id": [ "GSM514786", "GSM514787", "GSM514788", "GSM514789", "GSM514790" ], "type": "individual", "id": "GDS6177_5" }, { "dataset_id": "GDS6177", "description": "control", "sample_id": [ "GSM514766", "GSM514771", "GSM514776", "GSM514781", "GSM514786" ], "type": "protocol", "id": "GDS6177_6" }, { "dataset_id": "GDS6177", "description": "orange juice", "sample_id": [ "GSM514767", "GSM514768", "GSM514769", "GSM514770", "GSM514772", "GSM514773", "GSM514774", "GSM514775", "GSM514777", "GSM514778", "GSM514779", "GSM514780", "GSM514782", "GSM514783", "GSM514784", "GSM514785", "GSM514787", "GSM514788", "GSM514789", "GSM514790" ], "type": "protocol", "id": "GDS6177_7" }, { "dataset_id": "GDS6177", "description": "T1 (control)", "sample_id": [ "GSM514766", "GSM514771", "GSM514776", "GSM514781", "GSM514786" ], "type": "time", "id": "GDS6177_8" }, { "dataset_id": "GDS6177", "description": "T2 (90 minutes)", "sample_id": [ "GSM514767", "GSM514772", "GSM514777", "GSM514782", "GSM514787" ], "type": "time", "id": "GDS6177_9" }, { "dataset_id": "GDS6177", "description": "T3 (2 hours, 49 minutes)", "sample_id": [ "GSM514768", "GSM514773", "GSM514778", "GSM514783", "GSM514788" ], "type": "time", "id": "GDS6177_10" }, { "dataset_id": "GDS6177", "description": "T4 (5 hours, 8 minutes)", "sample_id": [ "GSM514769", "GSM514774", "GSM514779", "GSM514784", "GSM514789" ], "type": "time", "id": "GDS6177_11" }, { "dataset_id": "GDS6177", "description": "T5 (7 hours, 8 minutes)", "sample_id": [ "GSM514770", "GSM514775", "GSM514780", "GSM514785", "GSM514790" ], "type": "time", "id": "GDS6177_12" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS6177", "version": 1.0, "instances": "25", "variables": 30810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6177.tab", "compression": "gz" } ], [ [ "GDS618.tab" ], { "title": "Lung injury after hemorrhage", "description": "Temporal analysis of response of lung tissue to hemorrhagic shock. Male Sprague-Dawleys subjected to hemorrhage and lung tissue examined at various time points up to 72 hours.", "type": "Expression profiling by array", "pubmed_id": "16159910", "platform": "GPL968", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "13056", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "32", "value_type": "log ratio", "reference_series": "GSE1034", "order": "none", "update_date": "Jun 08 2015", "subsets": [ { "dataset_id": "GDS618", "description": "sham", "sample_id": [ "GSM16636", "GSM16640", "GSM16641", "GSM16642", "GSM16643", "GSM16644" ], "type": "protocol", "id": "GDS618_1" }, { "dataset_id": "GDS618", "description": "control", "sample_id": [ "GSM16637", "GSM16638", "GSM16639" ], "type": "protocol", "id": "GDS618_2" }, { "dataset_id": "GDS618", "description": "hemorrhage", "sample_id": [ "GSM16645", "GSM16646", "GSM16647", "GSM16648", "GSM16649", "GSM16650", "GSM16651", "GSM16652", "GSM16653", "GSM16654", "GSM16655", "GSM16656", "GSM16657", "GSM16658", "GSM16659", "GSM16660", "GSM16661", "GSM16662", "GSM16663", "GSM16664", "GSM16666", "GSM16667", "GSM16668" ], "type": "protocol", "id": "GDS618_3" }, { "dataset_id": "GDS618", "description": "n/a", "sample_id": [ "GSM16636", "GSM16640", "GSM16641", "GSM16642", "GSM16643", "GSM16644", "GSM16637", "GSM16638", "GSM16639" ], "type": "time", "id": "GDS618_4" }, { "dataset_id": "GDS618", "description": "1 h", "sample_id": [ "GSM16645", "GSM16646", "GSM16647" ], "type": "time", "id": "GDS618_5" }, { "dataset_id": "GDS618", "description": "3 h", "sample_id": [ "GSM16648", "GSM16649", "GSM16650" ], "type": "time", "id": "GDS618_6" }, { "dataset_id": "GDS618", "description": "6 h", "sample_id": [ "GSM16651", "GSM16652", "GSM16653", "GSM16654", "GSM16655" ], "type": "time", "id": "GDS618_7" }, { "dataset_id": "GDS618", "description": "16 h", "sample_id": [ "GSM16656", "GSM16657", "GSM16658" ], "type": "time", "id": "GDS618_8" }, { "dataset_id": "GDS618", "description": "24 h", "sample_id": [ "GSM16659", "GSM16660", "GSM16661" ], "type": "time", "id": "GDS618_9" }, { "dataset_id": "GDS618", "description": "48 h", "sample_id": [ "GSM16662", "GSM16663", "GSM16664" ], "type": "time", "id": "GDS618_10" }, { "dataset_id": "GDS618", "description": "72 h", "sample_id": [ "GSM16666", "GSM16667", "GSM16668" ], "type": "time", "id": "GDS618_11" } ], "taxid": "10116", "genes": 5638, "aggregation_function": "mean", "name": "GDS618", "version": 1.0, "instances": "32", "variables": 5641, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS618.tab", "compression": "gz" } ], [ [ "GDS62.tab" ], { "title": "Sex differences in immune response", "description": "Gene expression in lungs of males 15 and 40 days post-infection with Seoul hantavirus compared with females. Part of an investigation into whether sex steroid hormones modulate sex differences in host immune response.", "type": "Expression profiling by array", "pubmed_id": "15258986", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE488", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS62", "description": "noninfected", "sample_id": [ "GSM1179", "GSM1180", "GSM1181", "GSM1182" ], "type": "infection", "id": "GDS62_1" }, { "dataset_id": "GDS62", "description": "15 days post-infection", "sample_id": [ "GSM1183", "GSM1184", "GSM1185", "GSM1186" ], "type": "infection", "id": "GDS62_2" }, { "dataset_id": "GDS62", "description": "40 days post-infection", "sample_id": [ "GSM1187", "GSM1188", "GSM1189", "GSM1190" ], "type": "infection", "id": "GDS62_3" }, { "dataset_id": "GDS62", "description": "female", "sample_id": [ "GSM1179", "GSM1180", "GSM1183", "GSM1184", "GSM1187", "GSM1188" ], "type": "gender", "id": "GDS62_4" }, { "dataset_id": "GDS62", "description": "male", "sample_id": [ "GSM1181", "GSM1182", "GSM1185", "GSM1186", "GSM1189", "GSM1190" ], "type": "gender", "id": "GDS62_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS62", "version": 1.0, "instances": "12", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS62.tab", "compression": "gz" } ], [ [ "GDS621.tab" ], { "title": "Extraocular and hindlimb muscle development", "description": "Analysis of hindlimb and extraocular muscle (EOM) between birth and postnatal day 45. Dissecting allotype-specific regulatory mechanisms may help explain differential muscle group sensitivity to a variety of metabolic and neuromuscular diseases.", "type": "Expression profiling by array", "pubmed_id": "15138310", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE903", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS621", "description": "extraocular muscle", "sample_id": [ "GSM13695", "GSM13696", "GSM13697", "GSM13698", "GSM13699", "GSM13700", "GSM13701", "GSM13702", "GSM13703", "GSM13704", "GSM13705", "GSM13706", "GSM13707", "GSM13708", "GSM13709", "GSM13710", "GSM13711", "GSM13712" ], "type": "tissue", "id": "GDS621_1" }, { "dataset_id": "GDS621", "description": "gastrocnemius/soleus muscle", "sample_id": [ "GSM13668", "GSM13669", "GSM13671", "GSM13675", "GSM13676", "GSM13678", "GSM13680", "GSM13682", "GSM13685", "GSM13686", "GSM13687", "GSM13688", "GSM13689", "GSM13690", "GSM13691", "GSM13692", "GSM13693", "GSM13694" ], "type": "tissue", "id": "GDS621_2" }, { "dataset_id": "GDS621", "description": "day 0", "sample_id": [ "GSM13695", "GSM13696", "GSM13697", "GSM13668", "GSM13669", "GSM13671" ], "type": "age", "id": "GDS621_3" }, { "dataset_id": "GDS621", "description": "day 7", "sample_id": [ "GSM13698", "GSM13699", "GSM13700", "GSM13675", "GSM13676", "GSM13678" ], "type": "age", "id": "GDS621_4" }, { "dataset_id": "GDS621", "description": "day 14", "sample_id": [ "GSM13701", "GSM13702", "GSM13703", "GSM13680", "GSM13682", "GSM13685" ], "type": "age", "id": "GDS621_5" }, { "dataset_id": "GDS621", "description": "day 21", "sample_id": [ "GSM13704", "GSM13705", "GSM13706", "GSM13686", "GSM13687", "GSM13688" ], "type": "age", "id": "GDS621_6" }, { "dataset_id": "GDS621", "description": "day 28", "sample_id": [ "GSM13707", "GSM13708", "GSM13709", "GSM13689", "GSM13690", "GSM13691" ], "type": "age", "id": "GDS621_7" }, { "dataset_id": "GDS621", "description": "day 45", "sample_id": [ "GSM13710", "GSM13711", "GSM13712", "GSM13692", "GSM13693", "GSM13694" ], "type": "age", "id": "GDS621_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS621", "version": 1.0, "instances": "36", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS621.tab", "compression": "gz" } ], [ [ "GDS622.tab" ], { "title": "Endothelial cell microenvironment effect (1.2I)", "description": "Comparison of high endothelial venules endothelial cells (HEVEC) freshly isolated from tonsils with dedifferentiated HEVEC cultured ex vivo for 48 hours identifies gene expression controlled by tissue microenvironment.", "type": "Expression profiling by array", "pubmed_id": "14976058", "platform": "GPL127", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "1185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE751", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS622", "description": "HEVEC", "sample_id": [ "GSM11427", "GSM11428", "GSM11429", "GSM11430" ], "type": "cell type", "id": "GDS622_1" }, { "dataset_id": "GDS622", "description": "HUVEC", "sample_id": [ "GSM11431" ], "type": "cell type", "id": "GDS622_2" }, { "dataset_id": "GDS622", "description": "freshly isolated", "sample_id": [ "GSM11427", "GSM11428", "GSM11431" ], "type": "growth protocol", "id": "GDS622_3" }, { "dataset_id": "GDS622", "description": "dedifferentiated", "sample_id": [ "GSM11429", "GSM11430" ], "type": "growth protocol", "id": "GDS622_4" } ], "taxid": "9606", "genes": 1180, "aggregation_function": "mean", "name": "GDS622", "version": 1.0, "instances": "5", "variables": 1183, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS622.tab", "compression": "gz" } ], [ [ "GDS623.tab" ], { "title": "Endothelial cell microenvironment effect (1.2II)", "description": "Comparison of high endothelial venules endothelial cells (HEVEC) freshly isolated from tonsils with dedifferentiated HEVEC cultured ex vivo for 48 hours identifies gene expression controlled by tissue microenvironment.", "type": "Expression profiling by array", "pubmed_id": "14976058", "platform": "GPL128", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "1185", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE751", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS623", "description": "HEVEC", "sample_id": [ "GSM11432", "GSM11433", "GSM11434", "GSM11435" ], "type": "cell type", "id": "GDS623_1" }, { "dataset_id": "GDS623", "description": "HUVEC", "sample_id": [ "GSM11436" ], "type": "cell type", "id": "GDS623_2" }, { "dataset_id": "GDS623", "description": "freshly isolated", "sample_id": [ "GSM11432", "GSM11433", "GSM11436" ], "type": "growth protocol", "id": "GDS623_3" }, { "dataset_id": "GDS623", "description": "dedifferentiated", "sample_id": [ "GSM11434", "GSM11435" ], "type": "growth protocol", "id": "GDS623_4" } ], "taxid": "9606", "genes": 1172, "aggregation_function": "mean", "name": "GDS623", "version": 1.0, "instances": "5", "variables": 1175, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS623.tab", "compression": "gz" } ], [ [ "GDS624.tab" ], { "title": "Endothelial cell microenvironment effect (cardiovascular array)", "description": "Comparison of high endothelial venules endothelial cells (HEVEC) freshly isolated from tonsils with dedifferentiated HEVEC cultured ex vivo for 48 hours identifies gene expression controlled by tissue microenvironment.", "type": "Expression profiling by array", "pubmed_id": "14976058", "platform": "GPL549", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "597", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE751", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS624", "description": "HEVEC", "sample_id": [ "GSM11404", "GSM11406", "GSM11408", "GSM11410", "GSM11412" ], "type": "cell type", "id": "GDS624_1" }, { "dataset_id": "GDS624", "description": "HUVEC", "sample_id": [ "GSM11414" ], "type": "cell type", "id": "GDS624_2" }, { "dataset_id": "GDS624", "description": "freshly isolated", "sample_id": [ "GSM11404", "GSM11406", "GSM11408", "GSM11414" ], "type": "growth protocol", "id": "GDS624_3" }, { "dataset_id": "GDS624", "description": "dedifferentiated", "sample_id": [ "GSM11410", "GSM11412" ], "type": "growth protocol", "id": "GDS624_4" } ], "taxid": "9606", "genes": 596, "aggregation_function": "mean", "name": "GDS624", "version": 1.0, "instances": "6", "variables": 599, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS624.tab", "compression": "gz" } ], [ [ "GDS6247.tab" ], { "title": "Diet-induced obesity model: white adipose tissue", "description": "Analysis of epididymal and mesenteric white adipose tissues (WAT) of mice fed a high fat diet for up to 24 weeks. Excessive fat accumulation was evident in visceral WAT depots after 4 weeks. Results provide insight into the molecular events that occur during the development of diet-induced obesity.", "type": "Expression profiling by array", "pubmed_id": [ "22947075", "21618427" ], "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "40", "value_type": "transformed count", "reference_series": "GSE39549", "order": "none", "update_date": "Jun 29 2016", "subsets": [ { "dataset_id": "GDS6247", "description": "epididymal adipose", "sample_id": [ "GSM971546", "GSM971547", "GSM971548", "GSM971549", "GSM971550", "GSM971551", "GSM971552", "GSM971553", "GSM971554", "GSM971555", "GSM971556", "GSM971557", "GSM971558", "GSM971559", "GSM971560", "GSM971561", "GSM971562", "GSM971563", "GSM971564", "GSM971565", "GSM971566", "GSM971567", "GSM971568", "GSM971569", "GSM971570", "GSM971571", "GSM971572", "GSM971573", "GSM971574", "GSM971575" ], "type": "tissue", "id": "GDS6247_1" }, { "dataset_id": "GDS6247", "description": "mesenteric adipose", "sample_id": [ "GSM971576", "GSM971577", "GSM971578", "GSM971579", "GSM971580", "GSM971581", "GSM971582", "GSM971583", "GSM971584", "GSM971585" ], "type": "tissue", "id": "GDS6247_2" }, { "dataset_id": "GDS6247", "description": "normal diet", "sample_id": [ "GSM971546", "GSM971547", "GSM971548", "GSM971549", "GSM971550", "GSM971551", "GSM971552", "GSM971553", "GSM971554", "GSM971555", "GSM971556", "GSM971557", "GSM971558", "GSM971559", "GSM971560", "GSM971576", "GSM971577", "GSM971578", "GSM971579", "GSM971580" ], "type": "protocol", "id": "GDS6247_3" }, { "dataset_id": "GDS6247", "description": "high fat diet", "sample_id": [ "GSM971561", "GSM971562", "GSM971563", "GSM971564", "GSM971565", "GSM971566", "GSM971567", "GSM971568", "GSM971569", "GSM971570", "GSM971571", "GSM971572", "GSM971573", "GSM971574", "GSM971575", "GSM971581", "GSM971582", "GSM971583", "GSM971584", "GSM971585" ], "type": "protocol", "id": "GDS6247_4" }, { "dataset_id": "GDS6247", "description": "2 wk", "sample_id": [ "GSM971546", "GSM971547", "GSM971548", "GSM971561", "GSM971562", "GSM971563", "GSM971576", "GSM971581" ], "type": "time", "id": "GDS6247_5" }, { "dataset_id": "GDS6247", "description": "4 wk", "sample_id": [ "GSM971549", "GSM971550", "GSM971551", "GSM971564", "GSM971565", "GSM971566", "GSM971577", "GSM971582" ], "type": "time", "id": "GDS6247_6" }, { "dataset_id": "GDS6247", "description": "8 wk", "sample_id": [ "GSM971552", "GSM971553", "GSM971554", "GSM971567", "GSM971568", "GSM971569", "GSM971578", "GSM971583" ], "type": "time", "id": "GDS6247_7" }, { "dataset_id": "GDS6247", "description": "20 wk", "sample_id": [ "GSM971555", "GSM971556", "GSM971557", "GSM971570", "GSM971571", "GSM971572", "GSM971579", "GSM971584" ], "type": "time", "id": "GDS6247_8" }, { "dataset_id": "GDS6247", "description": "24 wk", "sample_id": [ "GSM971558", "GSM971559", "GSM971560", "GSM971573", "GSM971574", "GSM971575", "GSM971580", "GSM971585" ], "type": "time", "id": "GDS6247_9" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS6247", "version": 1.0, "instances": "40", "variables": 28108, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6247.tab", "compression": "gz" } ], [ [ "GDS6248.tab" ], { "title": "Diet-induced obesity model: liver", "description": "Analysis of livers of C57BL/6J mice fed a high fat diet for up to 24 weeks. Significant body weight gain was observed after 4 weeks. Results provide insight into the effect of high fat diets on metabolism in the liver.", "type": "Expression profiling by array", "pubmed_id": [ "22947075", "21618427" ], "platform": "GPL6887", "platform_organism": "Mus musculus", "platform_technology_type": "oligonucleotide beads", "feature_count": "45281", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "51", "value_type": "transformed count", "reference_series": "GSE39549", "order": "none", "update_date": "Jun 29 2016", "subsets": [ { "dataset_id": "GDS6248", "description": "baseline", "sample_id": [ "GSM994787", "GSM994788", "GSM994789" ], "type": "protocol", "id": "GDS6248_1" }, { "dataset_id": "GDS6248", "description": "normal diet", "sample_id": [ "GSM994790", "GSM994791", "GSM994792", "GSM994793", "GSM994794", "GSM994795", "GSM994796", "GSM994797", "GSM994798", "GSM994799", "GSM994800", "GSM994801", "GSM994802", "GSM994803", "GSM994804", "GSM994805", "GSM994806", "GSM994807", "GSM994808", "GSM994809", "GSM994810", "GSM994811", "GSM994812", "GSM994813" ], "type": "protocol", "id": "GDS6248_2" }, { "dataset_id": "GDS6248", "description": "high fat diet", "sample_id": [ "GSM994814", "GSM994815", "GSM994816", "GSM994817", "GSM994818", "GSM994819", "GSM994820", "GSM994821", "GSM994822", "GSM994823", "GSM994824", "GSM994825", "GSM994826", "GSM994827", "GSM994828", "GSM994829", "GSM994830", "GSM994831", "GSM994832", "GSM994833", "GSM994834", "GSM994835", "GSM994836", "GSM994837" ], "type": "protocol", "id": "GDS6248_3" }, { "dataset_id": "GDS6248", "description": "0 wk", "sample_id": [ "GSM994787", "GSM994788", "GSM994789" ], "type": "time", "id": "GDS6248_4" }, { "dataset_id": "GDS6248", "description": "2 wk", "sample_id": [ "GSM994790", "GSM994791", "GSM994792", "GSM994814", "GSM994815", "GSM994816" ], "type": "time", "id": "GDS6248_5" }, { "dataset_id": "GDS6248", "description": "4 wk", "sample_id": [ "GSM994793", "GSM994794", "GSM994795", "GSM994817", "GSM994818", "GSM994819" ], "type": "time", "id": "GDS6248_6" }, { "dataset_id": "GDS6248", "description": "6 wk", "sample_id": [ "GSM994796", "GSM994797", "GSM994798", "GSM994820", "GSM994821", "GSM994822" ], "type": "time", "id": "GDS6248_7" }, { "dataset_id": "GDS6248", "description": "8 wk", "sample_id": [ "GSM994799", "GSM994800", "GSM994801", "GSM994823", "GSM994824", "GSM994825" ], "type": "time", "id": "GDS6248_8" }, { "dataset_id": "GDS6248", "description": "12 wk", "sample_id": [ "GSM994802", "GSM994803", "GSM994804", "GSM994826", "GSM994827", "GSM994828" ], "type": "time", "id": "GDS6248_9" }, { "dataset_id": "GDS6248", "description": "16 wk", "sample_id": [ "GSM994805", "GSM994806", "GSM994807", "GSM994829", "GSM994830", "GSM994831" ], "type": "time", "id": "GDS6248_10" }, { "dataset_id": "GDS6248", "description": "20 wk", "sample_id": [ "GSM994808", "GSM994809", "GSM994810", "GSM994832", "GSM994833", "GSM994834" ], "type": "time", "id": "GDS6248_11" }, { "dataset_id": "GDS6248", "description": "24 wk", "sample_id": [ "GSM994811", "GSM994812", "GSM994813", "GSM994835", "GSM994836", "GSM994837" ], "type": "time", "id": "GDS6248_12" } ], "taxid": "10090", "genes": 28104, "aggregation_function": "mean", "name": "GDS6248", "version": 1.0, "instances": "51", "variables": 28107, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS6248.tab", "compression": "gz" } ], [ [ "GDS625.tab" ], { "title": "Gastric mucosa immune response to Helicobacter pylori", "description": "Examination of gastric mucosa inflammatory response to Helicobacter pylori infection. Gastric biopsies from healthy and H. pylori-infected patients compared. Infection can lead to cellular hyperproliferation and malignant transformation.", "type": "Expression profiling by array", "pubmed_id": "14764733", "platform": "GPL193", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "862", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "count", "reference_series": "GSE581", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS625", "description": "H. pylori - marked", "sample_id": [ "GSM8907", "GSM8909", "GSM8910", "GSM8912", "GSM8920", "GSM8924", "GSM8925", "GSM12762", "GSM12763" ], "type": "infection", "id": "GDS625_1" }, { "dataset_id": "GDS625", "description": "H. pylori - moderate", "sample_id": [ "GSM8915", "GSM8917", "GSM8921", "GSM8923", "GSM12767" ], "type": "infection", "id": "GDS625_2" }, { "dataset_id": "GDS625", "description": "H. pylori - mild", "sample_id": [ "GSM8905" ], "type": "infection", "id": "GDS625_3" }, { "dataset_id": "GDS625", "description": "none", "sample_id": [ "GSM8906", "GSM8908", "GSM8911", "GSM8913", "GSM8914", "GSM8916", "GSM8918", "GSM8919", "GSM8922", "GSM12764", "GSM12765", "GSM12766" ], "type": "infection", "id": "GDS625_4" }, { "dataset_id": "GDS625", "description": "antumn gastric biopsy", "sample_id": [ "GSM8907", "GSM8909", "GSM8910", "GSM8912", "GSM8920", "GSM8924", "GSM8925", "GSM8915", "GSM8917", "GSM8921", "GSM8923", "GSM8905", "GSM8906", "GSM8908", "GSM8911", "GSM8913", "GSM8914", "GSM8916", "GSM8918", "GSM8919", "GSM8922" ], "type": "tissue", "id": "GDS625_5" }, { "dataset_id": "GDS625", "description": "corpus gastric biopsy", "sample_id": [ "GSM12762", "GSM12763", "GSM12764", "GSM12765", "GSM12766", "GSM12767" ], "type": "tissue", "id": "GDS625_6" } ], "taxid": "9606", "genes": 861, "aggregation_function": "mean", "name": "GDS625", "version": 1.0, "instances": "27", "variables": 864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS625.tab", "compression": "gz" } ], [ [ "GDS627.tab" ], { "title": "Cardiac development in embryo", "description": "Analysis of strain C57BL/6 embryo heart development from E (embryonic day) 10.5 to E18.5, which encompass stages of septation of atrial and ventricular chambers as well as cardiac outflow tract. Atrial and ventricular chambers analyzed separately.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1261", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "45101", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE1479", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS627", "description": "E10.5", "sample_id": [ "GSM25150", "GSM25151", "GSM25152" ], "type": "development stage", "id": "GDS627_1" }, { "dataset_id": "GDS627", "description": "E11.5", "sample_id": [ "GSM25153", "GSM25154", "GSM25155" ], "type": "development stage", "id": "GDS627_2" }, { "dataset_id": "GDS627", "description": "E12.5", "sample_id": [ "GSM25156", "GSM25157", "GSM25158", "GSM25159", "GSM25160", "GSM25161" ], "type": "development stage", "id": "GDS627_3" }, { "dataset_id": "GDS627", "description": "E13.5", "sample_id": [ "GSM25162", "GSM25163", "GSM25164", "GSM25165", "GSM25166", "GSM25167" ], "type": "development stage", "id": "GDS627_4" }, { "dataset_id": "GDS627", "description": "E14.5", "sample_id": [ "GSM25168", "GSM25169", "GSM25170", "GSM25171", "GSM25172", "GSM25173" ], "type": "development stage", "id": "GDS627_5" }, { "dataset_id": "GDS627", "description": "E16.5", "sample_id": [ "GSM25174", "GSM25175", "GSM25176", "GSM25177", "GSM25178", "GSM25179" ], "type": "development stage", "id": "GDS627_6" }, { "dataset_id": "GDS627", "description": "E18.5", "sample_id": [ "GSM25180", "GSM25181", "GSM25182", "GSM25183", "GSM25184", "GSM25185" ], "type": "development stage", "id": "GDS627_7" }, { "dataset_id": "GDS627", "description": "whole heart", "sample_id": [ "GSM25150", "GSM25151", "GSM25152", "GSM25153", "GSM25154", "GSM25155" ], "type": "tissue", "id": "GDS627_8" }, { "dataset_id": "GDS627", "description": "both ventricles", "sample_id": [ "GSM25156", "GSM25157", "GSM25158", "GSM25162", "GSM25163", "GSM25164", "GSM25168", "GSM25169", "GSM25170", "GSM25174", "GSM25175", "GSM25176", "GSM25180", "GSM25181", "GSM25182" ], "type": "tissue", "id": "GDS627_9" }, { "dataset_id": "GDS627", "description": "atrial chamber", "sample_id": [ "GSM25159", "GSM25160", "GSM25161", "GSM25165", "GSM25166", "GSM25167", "GSM25171", "GSM25172", "GSM25173", "GSM25177", "GSM25178", "GSM25179", "GSM25183", "GSM25184", "GSM25185" ], "type": "tissue", "id": "GDS627_10" } ], "taxid": "10090", "genes": 26681, "aggregation_function": "mean", "name": "GDS627", "version": 1.0, "instances": "36", "variables": 26684, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS627.tab", "compression": "gz" } ], [ [ "GDS63.tab" ], { "title": "Spinal cord injury and regeneration time course: at T9 (RG-U34A)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord at thoracic vertebrae T9 at various time points up to 28 days post injury. Mild, moderate and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "89", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS63", "description": "control", "sample_id": [ "GSM1330", "GSM1332", "GSM1333", "GSM1334", "GSM1335", "GSM1336", "GSM1337", "GSM1338", "GSM31250", "GSM31253", "GSM31254", "GSM31258", "GSM31263", "GSM31264", "GSM31267", "GSM31268", "GSM31269", "GSM31270", "GSM31509" ], "type": "protocol", "id": "GDS63_1" }, { "dataset_id": "GDS63", "description": "mild injury", "sample_id": [ "GSM1136", "GSM1137", "GSM1323", "GSM1324", "GSM1326", "GSM1327", "GSM1328", "GSM1329", "GSM4418", "GSM4419", "GSM4420", "GSM4421", "GSM4422", "GSM4477", "GSM31197", "GSM31205", "GSM31225", "GSM31226", "GSM31229", "GSM31230", "GSM31196", "GSM31299" ], "type": "protocol", "id": "GDS63_2" }, { "dataset_id": "GDS63", "description": "moderate injury", "sample_id": [ "GSM31194", "GSM31513", "GSM31515", "GSM31521", "GSM31522", "GSM31524", "GSM31533", "GSM31536", "GSM31538", "GSM31539", "GSM31541", "GSM31542", "GSM31550", "GSM31551", "GSM31557", "GSM31558", "GSM31561", "GSM31563", "GSM31568", "GSM31572", "GSM31574", "GSM31577", "GSM31580", "GSM31582", "GSM31584", "GSM31595", "GSM31597", "GSM31665", "GSM31666" ], "type": "protocol", "id": "GDS63_3" }, { "dataset_id": "GDS63", "description": "severe injury", "sample_id": [ "GSM7566", "GSM7569", "GSM7572", "GSM7575", "GSM7578", "GSM7581", "GSM7584", "GSM7587", "GSM7590", "GSM7593", "GSM7596", "GSM7599", "GSM31598", "GSM31599", "GSM31603", "GSM31604", "GSM31610", "GSM31611", "GSM31616" ], "type": "protocol", "id": "GDS63_4" }, { "dataset_id": "GDS63", "description": "0 h", "sample_id": [ "GSM1337", "GSM1338" ], "type": "time", "id": "GDS63_5" }, { "dataset_id": "GDS63", "description": "0.5 h", "sample_id": [ "GSM1323", "GSM1324", "GSM1332", "GSM1333", "GSM4418", "GSM31230" ], "type": "time", "id": "GDS63_6" }, { "dataset_id": "GDS63", "description": "4 h", "sample_id": [ "GSM1334", "GSM4419", "GSM4420", "GSM4421", "GSM4422", "GSM7578", "GSM7581", "GSM7584", "GSM7587", "GSM31264", "GSM31270", "GSM31558", "GSM31563", "GSM31568", "GSM31572" ], "type": "time", "id": "GDS63_7" }, { "dataset_id": "GDS63", "description": "0.5 d", "sample_id": [ "GSM31513", "GSM31515", "GSM31521", "GSM31522" ], "type": "time", "id": "GDS63_8" }, { "dataset_id": "GDS63", "description": "1 d", "sample_id": [ "GSM1136", "GSM1137", "GSM1330", "GSM4477", "GSM7566", "GSM7569", "GSM7572", "GSM7575", "GSM31250", "GSM31254", "GSM31533", "GSM31536", "GSM31665", "GSM31666", "GSM31205" ], "type": "time", "id": "GDS63_9" }, { "dataset_id": "GDS63", "description": "2 d", "sample_id": [ "GSM31267", "GSM31268", "GSM31550", "GSM31551", "GSM31557", "GSM31561" ], "type": "time", "id": "GDS63_10" }, { "dataset_id": "GDS63", "description": "3 d", "sample_id": [ "GSM31194", "GSM31509", "GSM31574", "GSM31577", "GSM31580" ], "type": "time", "id": "GDS63_11" }, { "dataset_id": "GDS63", "description": "7 d", "sample_id": [ "GSM1326", "GSM1327", "GSM1328", "GSM1329", "GSM1335", "GSM1336", "GSM7590", "GSM7593", "GSM7596", "GSM7599", "GSM31582", "GSM31584", "GSM31595", "GSM31597" ], "type": "time", "id": "GDS63_12" }, { "dataset_id": "GDS63", "description": "14 d", "sample_id": [ "GSM31196", "GSM31197", "GSM31253", "GSM31258", "GSM31599", "GSM31616", "GSM31299", "GSM31598" ], "type": "time", "id": "GDS63_13" }, { "dataset_id": "GDS63", "description": "21 d", "sample_id": [ "GSM31524" ], "type": "time", "id": "GDS63_14" }, { "dataset_id": "GDS63", "description": "28 d", "sample_id": [ "GSM31225", "GSM31226", "GSM31229", "GSM31263", "GSM31269", "GSM31538", "GSM31539", "GSM31541", "GSM31542", "GSM31603", "GSM31604", "GSM31610", "GSM31611" ], "type": "time", "id": "GDS63_15" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS63", "version": 1.0, "instances": "89", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS63.tab", "compression": "gz" } ], [ [ "GDS630.tab" ], { "title": "Microphthalmia induction by ocular teratogen: dose response", "description": "Dose response analysis of ocular teratogen 2-chloro-2'deoxyadenosine (2CdA) exposure and induction of microphthalmia (small eye syndrome). Pregnant 8 days post coitum CD-1 dams exposed to 5, 2.5, 1.25 or 0.625 mg/kg 2CdA, and embryos examined at 3 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE1068", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS630", "description": "0.625 mg/kg", "sample_id": [ "GSM12052", "GSM12053" ], "type": "dose", "id": "GDS630_1" }, { "dataset_id": "GDS630", "description": "1.25 mg/kg", "sample_id": [ "GSM12054", "GSM12058" ], "type": "dose", "id": "GDS630_2" }, { "dataset_id": "GDS630", "description": "2.5 mg/kg", "sample_id": [ "GSM12059", "GSM12060" ], "type": "dose", "id": "GDS630_3" }, { "dataset_id": "GDS630", "description": "5.0 mg/kg", "sample_id": [ "GSM12061", "GSM12062" ], "type": "dose", "id": "GDS630_4" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS630", "version": 1.0, "instances": "8", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS630.tab", "compression": "gz" } ], [ [ "GDS631.tab" ], { "title": "Microphthalmia induction by ocular teratogen: time course", "description": "Temporal analysis of ocular teratogen 2-chloro-2'deoxyadenosine (2CdA) exposure and induction of microphthalmia (small eye syndrome). Pregnant 8 days post coitum CD-1 dams exposed to 2.5 mg/kg 2CdA, and embryonic headfold examined at 3, 4.5, and 6 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE1069", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS631", "description": "3 h", "sample_id": [ "GSM12066", "GSM12068" ], "type": "time", "id": "GDS631_1" }, { "dataset_id": "GDS631", "description": "4.5 h", "sample_id": [ "GSM12073", "GSM12074" ], "type": "time", "id": "GDS631_2" }, { "dataset_id": "GDS631", "description": "6 h", "sample_id": [ "GSM12076", "GSM12077" ], "type": "time", "id": "GDS631_3" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS631", "version": 1.0, "instances": "6", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS631.tab", "compression": "gz" } ], [ [ "GDS632.tab" ], { "title": "Microphthalmia induction by ocular teratogen: PK11195 intervention", "description": "Temporal analysis of ocular teratogen 2-chloro-2'deoxyadenosine (2CdA) exposure in developing embryos, intervention with PK11195, and induction of microphthalmia (small eye syndrome). Embryonic headfold examined at 3, 4.5, and 6 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE1070", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS632", "description": "3 h", "sample_id": [ "GSM12202", "GSM12203" ], "type": "time", "id": "GDS632_1" }, { "dataset_id": "GDS632", "description": "4.5 h", "sample_id": [ "GSM12204", "GSM12206" ], "type": "time", "id": "GDS632_2" }, { "dataset_id": "GDS632", "description": "6 h", "sample_id": [ "GSM12207", "GSM12208" ], "type": "time", "id": "GDS632_3" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS632", "version": 1.0, "instances": "6", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS632.tab", "compression": "gz" } ], [ [ "GDS635.tab" ], { "title": "Fetal minamata disease induction by methylmercury: dose response", "description": "Dose response analysis of methylmercury (MeHg) exposure in embryos. Pregnant 9 days post coitum CD-1 dams injected with 10, 5, 2.5, or 1.25 mg/kg MeHg. Embryonic forebrain examined after 3 hours. MeHg induces symptoms of fetal minamata disease (FMD).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE1075", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS635", "description": "1.25 mg/kg", "sample_id": [ "GSM12236", "GSM12237" ], "type": "dose", "id": "GDS635_1" }, { "dataset_id": "GDS635", "description": "2.5 mg/kg", "sample_id": [ "GSM12238", "GSM12239" ], "type": "dose", "id": "GDS635_2" }, { "dataset_id": "GDS635", "description": "5.0 mg/kg", "sample_id": [ "GSM12240", "GSM12241" ], "type": "dose", "id": "GDS635_3" }, { "dataset_id": "GDS635", "description": "10.0 mg/kg", "sample_id": [ "GSM12242", "GSM12243" ], "type": "dose", "id": "GDS635_4" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS635", "version": 1.0, "instances": "8", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS635.tab", "compression": "gz" } ], [ [ "GDS636.tab" ], { "title": "Fetal minamata disease induction by methylmercury: time course", "description": "Temporal analysis of methylmercury (MeHg) exposure in embryos. Pregnant 9 days post coitum CD-1 dams injected with 5.0 mg/kg MeHg. Embryonic forebrain examined at 1.5 - 24 hours post-treatment. MeHg induces symptoms of fetal minamata disease (FMD).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "13", "value_type": "log ratio", "reference_series": "GSE1076", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS636", "description": "1.5 h", "sample_id": [ "GSM12244", "GSM12245" ], "type": "time", "id": "GDS636_1" }, { "dataset_id": "GDS636", "description": "3 h", "sample_id": [ "GSM12246", "GSM12247" ], "type": "time", "id": "GDS636_2" }, { "dataset_id": "GDS636", "description": "4.5 h", "sample_id": [ "GSM12248", "GSM12249" ], "type": "time", "id": "GDS636_3" }, { "dataset_id": "GDS636", "description": "6 h", "sample_id": [ "GSM12250", "GSM12251" ], "type": "time", "id": "GDS636_4" }, { "dataset_id": "GDS636", "description": "12 h", "sample_id": [ "GSM12252", "GSM12253", "GSM12254" ], "type": "time", "id": "GDS636_5" }, { "dataset_id": "GDS636", "description": "24 h", "sample_id": [ "GSM12255", "GSM12256" ], "type": "time", "id": "GDS636_6" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS636", "version": 1.0, "instances": "13", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS636.tab", "compression": "gz" } ], [ [ "GDS637.tab" ], { "title": "Fetal minamata disease induction by methylmercury: PK11195 intervention", "description": "Temporal analysis of methylmercury (MeHg) exposure, and PK11195 intervention. Pregnant 9 days post coitum CD-1 dams injected with 5.0 mg/kg MeHg. Embryonic forebrain examined at 3, 4.5 and 6 hours. MeHg induces symptoms of fetal minamata disease (FMD).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL560", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "2382", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE1077", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS637", "description": "3 h", "sample_id": [ "GSM12259", "GSM12260" ], "type": "time", "id": "GDS637_1" }, { "dataset_id": "GDS637", "description": "4.5 h", "sample_id": [ "GSM12261", "GSM12262", "GSM12263" ], "type": "time", "id": "GDS637_2" }, { "dataset_id": "GDS637", "description": "6 h", "sample_id": [ "GSM12264", "GSM12265" ], "type": "time", "id": "GDS637_3" } ], "taxid": "10090", "genes": 2258, "aggregation_function": "mean", "name": "GDS637", "version": 1.0, "instances": "7", "variables": 2260, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS637.tab", "compression": "gz" } ], [ [ "GDS638.tab" ], { "title": "Dystrophin-deficient mdx diaphram muscle development time course", "description": "Temporal analysis of diaphram muscle from dystrophin-deficient mdx mice, a Duchenne muscular dystrophy (DMD) model. Postnatal ages 7 to 112 days examined. Results provide insight into mechanisms of muscular dystrophy pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "14681298", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE1026", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS638", "description": "mdx", "sample_id": [ "GSM16475", "GSM16476", "GSM16477", "GSM16481", "GSM16482", "GSM16483", "GSM16487", "GSM16488", "GSM16489", "GSM16493", "GSM16494", "GSM16495", "GSM16499", "GSM16500", "GSM16501", "GSM16505", "GSM16506", "GSM16507" ], "type": "strain", "id": "GDS638_1" }, { "dataset_id": "GDS638", "description": "wild type", "sample_id": [ "GSM16472", "GSM16473", "GSM16474", "GSM16478", "GSM16479", "GSM16480", "GSM16484", "GSM16485", "GSM16486", "GSM16490", "GSM16491", "GSM16492", "GSM16496", "GSM16497", "GSM16498", "GSM16502", "GSM16503", "GSM16504" ], "type": "strain", "id": "GDS638_2" }, { "dataset_id": "GDS638", "description": "7 day", "sample_id": [ "GSM16472", "GSM16473", "GSM16474", "GSM16475", "GSM16476", "GSM16477" ], "type": "age", "id": "GDS638_3" }, { "dataset_id": "GDS638", "description": "14 day", "sample_id": [ "GSM16478", "GSM16479", "GSM16480", "GSM16481", "GSM16482", "GSM16483" ], "type": "age", "id": "GDS638_4" }, { "dataset_id": "GDS638", "description": "23 day", "sample_id": [ "GSM16484", "GSM16485", "GSM16486", "GSM16487", "GSM16488", "GSM16489" ], "type": "age", "id": "GDS638_5" }, { "dataset_id": "GDS638", "description": "28 day", "sample_id": [ "GSM16490", "GSM16491", "GSM16492", "GSM16493", "GSM16494", "GSM16495" ], "type": "age", "id": "GDS638_6" }, { "dataset_id": "GDS638", "description": "56 day", "sample_id": [ "GSM16496", "GSM16497", "GSM16498", "GSM16499", "GSM16500", "GSM16501" ], "type": "age", "id": "GDS638_7" }, { "dataset_id": "GDS638", "description": "112 day", "sample_id": [ "GSM16502", "GSM16503", "GSM16504", "GSM16505", "GSM16506", "GSM16507" ], "type": "age", "id": "GDS638_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS638", "version": 1.0, "instances": "36", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS638.tab", "compression": "gz" } ], [ [ "GDS639.tab" ], { "title": "Dystrophin-deficient mdx hindlimb muscle development time course", "description": "Temporal analysis of hindlimb gastrocnemius/soleus muscle from dystrophin-deficient mdx mice, a Duchenne muscular dystrophy (DMD) model. Postnatal ages 7 to 112 days examined. Results provide insight into mechanisms of muscular dystrophy pathogenesis.", "type": "Expression profiling by array", "pubmed_id": "12874102", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE1025", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS639", "description": "mdx", "sample_id": [ "GSM15863", "GSM15864", "GSM15865", "GSM15936", "GSM15937", "GSM15938", "GSM16451", "GSM16452", "GSM16453", "GSM16457", "GSM16458", "GSM16459", "GSM16463", "GSM16464", "GSM16465", "GSM16469", "GSM16470", "GSM16471" ], "type": "strain", "id": "GDS639_1" }, { "dataset_id": "GDS639", "description": "wild type", "sample_id": [ "GSM15860", "GSM15861", "GSM15862", "GSM15933", "GSM15934", "GSM15935", "GSM15939", "GSM16449", "GSM16450", "GSM16454", "GSM16455", "GSM16456", "GSM16460", "GSM16461", "GSM16462", "GSM16466", "GSM16467", "GSM16468" ], "type": "strain", "id": "GDS639_2" }, { "dataset_id": "GDS639", "description": "7 day", "sample_id": [ "GSM15860", "GSM15861", "GSM15862", "GSM15863", "GSM15864", "GSM15865" ], "type": "age", "id": "GDS639_3" }, { "dataset_id": "GDS639", "description": "14 day", "sample_id": [ "GSM15933", "GSM15934", "GSM15935", "GSM15936", "GSM15937", "GSM15938" ], "type": "age", "id": "GDS639_4" }, { "dataset_id": "GDS639", "description": "23 day", "sample_id": [ "GSM15939", "GSM16449", "GSM16450", "GSM16451", "GSM16452", "GSM16453" ], "type": "age", "id": "GDS639_5" }, { "dataset_id": "GDS639", "description": "28 day", "sample_id": [ "GSM16454", "GSM16455", "GSM16456", "GSM16457", "GSM16458", "GSM16459" ], "type": "age", "id": "GDS639_6" }, { "dataset_id": "GDS639", "description": "56 day", "sample_id": [ "GSM16460", "GSM16461", "GSM16462", "GSM16463", "GSM16464", "GSM16465" ], "type": "age", "id": "GDS639_7" }, { "dataset_id": "GDS639", "description": "112 day", "sample_id": [ "GSM16466", "GSM16467", "GSM16468", "GSM16469", "GSM16470", "GSM16471" ], "type": "age", "id": "GDS639_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS639", "version": 1.0, "instances": "36", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS639.tab", "compression": "gz" } ], [ [ "GDS64.tab" ], { "title": "Lung ventilation", "description": "Analysis of the separate and combined effects of large tidal volume ventilation and hyperoxia in the lungs of anesthetized animals, using 21 or 100% oxygen.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE489", "order": "none", "update_date": "Nov 15 2005", "subsets": [ { "dataset_id": "GDS64", "description": "nonventilated", "sample_id": [ "GSM1165", "GSM1166", "GSM46561", "GSM46563" ], "type": "protocol", "id": "GDS64_1" }, { "dataset_id": "GDS64", "description": "ventilated", "sample_id": [ "GSM1175", "GSM1176", "GSM46562", "GSM46564", "GSM46565" ], "type": "protocol", "id": "GDS64_2" }, { "dataset_id": "GDS64", "description": "21 percent oxygen", "sample_id": [ "GSM1165", "GSM1166", "GSM46564", "GSM46565" ], "type": "dose", "id": "GDS64_3" }, { "dataset_id": "GDS64", "description": "100 percent oxygen", "sample_id": [ "GSM1175", "GSM1176", "GSM46561", "GSM46562", "GSM46563" ], "type": "dose", "id": "GDS64_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS64", "version": 1.0, "instances": "9", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS64.tab", "compression": "gz" } ], [ [ "GDS640.tab" ], { "title": "Germ-free gastrointestinal tract", "description": "Analysis of germ-free and conventional corpus, jejunum, descending colon and rectum. Findings identify important interaction between commensal microbiota and gastrointestinal tract transcriptome.", "type": "Expression profiling by array", "pubmed_id": "15226484", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1392", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS640", "description": "conventional", "sample_id": [ "GSM22558", "GSM22559", "GSM22560", "GSM22561", "GSM22562", "GSM22563", "GSM22564", "GSM22565", "GSM22566", "GSM22567", "GSM22568", "GSM22569" ], "type": "other", "id": "GDS640_1" }, { "dataset_id": "GDS640", "description": "germ-free", "sample_id": [ "GSM22570", "GSM22571", "GSM22572", "GSM22573", "GSM22574", "GSM22575", "GSM22576", "GSM22577", "GSM22578", "GSM22579", "GSM22580", "GSM22581" ], "type": "other", "id": "GDS640_2" }, { "dataset_id": "GDS640", "description": "descending colon", "sample_id": [ "GSM22558", "GSM22559", "GSM22560", "GSM22570", "GSM22571", "GSM22572" ], "type": "tissue", "id": "GDS640_3" }, { "dataset_id": "GDS640", "description": "corpus", "sample_id": [ "GSM22561", "GSM22562", "GSM22563", "GSM22573", "GSM22574", "GSM22575" ], "type": "tissue", "id": "GDS640_4" }, { "dataset_id": "GDS640", "description": "jejunum", "sample_id": [ "GSM22564", "GSM22565", "GSM22566", "GSM22576", "GSM22577", "GSM22578" ], "type": "tissue", "id": "GDS640_5" }, { "dataset_id": "GDS640", "description": "rectum", "sample_id": [ "GSM22567", "GSM22568", "GSM22569", "GSM22579", "GSM22580", "GSM22581" ], "type": "tissue", "id": "GDS640_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS640", "version": 1.0, "instances": "24", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS640.tab", "compression": "gz" } ], [ [ "GDS641.tab" ], { "title": "Dystrophin-deficient mdx, mdx5cv and wild type skeletal muscle profiles", "description": "Analysis of diaphragm, extensor digitorum longus, gastroc, soleus, quadricep, and tibialis anterior muscle in 8 week old male dystrophin-deficient mdx, mdx5cv, and C57BL10 wild type provides insight into pathogenesis of muscular dystrophy.", "type": "Expression profiling by array", "pubmed_id": "16261416", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE897", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS641", "description": "mdx", "sample_id": [ "GSM13565", "GSM13566", "GSM13667", "GSM13670", "GSM13679", "GSM13681", "GSM13723", "GSM13725", "GSM13738", "GSM13740", "GSM13746", "GSM13747" ], "type": "strain", "id": "GDS641_1" }, { "dataset_id": "GDS641", "description": "mdx5cv", "sample_id": [ "GSM13567", "GSM13568", "GSM13665", "GSM13666", "GSM13683", "GSM13684", "GSM13728", "GSM13731", "GSM13741", "GSM13743", "GSM13748", "GSM13750" ], "type": "strain", "id": "GDS641_2" }, { "dataset_id": "GDS641", "description": "wild type", "sample_id": [ "GSM13563", "GSM13564", "GSM13672", "GSM13673", "GSM13674", "GSM13677", "GSM13718", "GSM13720", "GSM13735", "GSM13736", "GSM13744", "GSM13745" ], "type": "strain", "id": "GDS641_3" }, { "dataset_id": "GDS641", "description": "diaphragm", "sample_id": [ "GSM13563", "GSM13564", "GSM13565", "GSM13566", "GSM13567", "GSM13568" ], "type": "tissue", "id": "GDS641_4" }, { "dataset_id": "GDS641", "description": "extensor digitorum longus", "sample_id": [ "GSM13665", "GSM13666", "GSM13667", "GSM13670", "GSM13672", "GSM13673" ], "type": "tissue", "id": "GDS641_5" }, { "dataset_id": "GDS641", "description": "gastroc", "sample_id": [ "GSM13674", "GSM13677", "GSM13679", "GSM13681", "GSM13683", "GSM13684" ], "type": "tissue", "id": "GDS641_6" }, { "dataset_id": "GDS641", "description": "quadriceps", "sample_id": [ "GSM13718", "GSM13720", "GSM13723", "GSM13725", "GSM13728", "GSM13731" ], "type": "tissue", "id": "GDS641_7" }, { "dataset_id": "GDS641", "description": "soleus", "sample_id": [ "GSM13735", "GSM13736", "GSM13738", "GSM13740", "GSM13741", "GSM13743" ], "type": "tissue", "id": "GDS641_8" }, { "dataset_id": "GDS641", "description": "tibialis anterior", "sample_id": [ "GSM13744", "GSM13745", "GSM13746", "GSM13747", "GSM13748", "GSM13750" ], "type": "tissue", "id": "GDS641_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS641", "version": 1.0, "instances": "36", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS641.tab", "compression": "gz" } ], [ [ "GDS647.tab" ], { "title": "Aging of cultured myotubes and glucose metabolism", "description": "Examination of aging myotubes from a muscle biopsy incubated in glucose. Myotubes in 25 mM glucose at 2, 3, 4, 5, and 7 weeks, and in 10 mM glucose at 4 weeks examined in reference to 0 mM glucose control at 1 week.", "type": "Expression profiling by array", "pubmed_id": "17052863", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE1144", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS647", "description": "0 mM glucose", "sample_id": [ "GSM19153" ], "type": "growth protocol", "id": "GDS647_1" }, { "dataset_id": "GDS647", "description": "10 mM glucose", "sample_id": [ "GSM19157" ], "type": "growth protocol", "id": "GDS647_2" }, { "dataset_id": "GDS647", "description": "25 mM glucose", "sample_id": [ "GSM19154", "GSM19155", "GSM19156", "GSM19163", "GSM19164" ], "type": "growth protocol", "id": "GDS647_3" }, { "dataset_id": "GDS647", "description": "1 w", "sample_id": [ "GSM19153" ], "type": "time", "id": "GDS647_4" }, { "dataset_id": "GDS647", "description": "2 w", "sample_id": [ "GSM19154" ], "type": "time", "id": "GDS647_5" }, { "dataset_id": "GDS647", "description": "3 w", "sample_id": [ "GSM19155" ], "type": "time", "id": "GDS647_6" }, { "dataset_id": "GDS647", "description": "4 w", "sample_id": [ "GSM19156", "GSM19157" ], "type": "time", "id": "GDS647_7" }, { "dataset_id": "GDS647", "description": "5 w", "sample_id": [ "GSM19163" ], "type": "time", "id": "GDS647_8" }, { "dataset_id": "GDS647", "description": "7 w", "sample_id": [ "GSM19164" ], "type": "time", "id": "GDS647_9" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS647", "version": 1.0, "instances": "7", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS647.tab", "compression": "gz" } ], [ [ "GDS648.tab" ], { "title": "Insulin-like growth factor receptor overexpression in heart", "description": "Characterization of ventricles from transgenics with an overexpressed IGF1R, and from double transgenics with an overexpressed IGF1R and either a constitutively active phosphatidylinositol-3-kinase (PI3K) or a dominan", "type": "Expression profiling by array", "pubmed_id": "14597618", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1143", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS648", "description": "high IGF1R", "sample_id": [ "GSM18361", "GSM18362", "GSM18363" ], "type": "strain", "id": "GDS648_1" }, { "dataset_id": "GDS648", "description": "high IGF1R, constitutive PI3K", "sample_id": [ "GSM18364", "GSM18365", "GSM18366" ], "type": "strain", "id": "GDS648_2" }, { "dataset_id": "GDS648", "description": "high IGF1R, dominant negative PI3K", "sample_id": [ "GSM18367", "GSM18368", "GSM18369" ], "type": "strain", "id": "GDS648_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS648", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS648.tab", "compression": "gz" } ], [ [ "GDS649.tab" ], { "title": "Inflammatory response of interleukin-1-stimulated endothelial cells", "description": "Temporal analysis of human umbilical vein endothelial cell (HUVEC) inflammatory response to interleukin-1 (IL-1) stimulation for 0, 0.5, 1, 2.5, and 6 hours. Immediate-early to early gene expression program characterized.", "type": "Expression profiling by array", "pubmed_id": "15130917", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE973", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS649", "description": "0 h", "sample_id": [ "GSM15389" ], "type": "time", "id": "GDS649_1" }, { "dataset_id": "GDS649", "description": "0.5 h", "sample_id": [ "GSM15390" ], "type": "time", "id": "GDS649_2" }, { "dataset_id": "GDS649", "description": "1 h", "sample_id": [ "GSM15391" ], "type": "time", "id": "GDS649_3" }, { "dataset_id": "GDS649", "description": "2.5 h", "sample_id": [ "GSM15392" ], "type": "time", "id": "GDS649_4" }, { "dataset_id": "GDS649", "description": "6 h", "sample_id": [ "GSM15393" ], "type": "time", "id": "GDS649_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS649", "version": 1.0, "instances": "5", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS649.tab", "compression": "gz" } ], [ [ "GDS651.tab" ], { "title": "Heart failure arising from different etiologies", "description": "Examination of left ventricle in idiopathic dilated and ischemic cardiomyopathy. Diseased ventricles examined in reference to normal.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL570", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "54675", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "37", "value_type": "count", "reference_series": "GSE1145", "order": "none", "update_date": "Aug 02 2004", "subsets": [ { "dataset_id": "GDS651", "description": "normal", "sample_id": [ "GSM18442", "GSM18443", "GSM18444", "GSM18445", "GSM18446", "GSM18447", "GSM18448", "GSM18449", "GSM18450", "GSM18451", "GSM18452" ], "type": "disease state", "id": "GDS651_1" }, { "dataset_id": "GDS651", "description": "idiopathic dilated", "sample_id": [ "GSM18422", "GSM18423", "GSM18424", "GSM18425", "GSM18426", "GSM18427", "GSM18428", "GSM18429", "GSM18430", "GSM18431", "GSM18432", "GSM18433", "GSM18434", "GSM18435", "GSM18436" ], "type": "disease state", "id": "GDS651_2" }, { "dataset_id": "GDS651", "description": "ischemic", "sample_id": [ "GSM18477", "GSM18478", "GSM18479", "GSM18480", "GSM18481", "GSM18482", "GSM18483", "GSM18484", "GSM18485", "GSM18486", "GSM18487" ], "type": "disease state", "id": "GDS651_3" } ], "taxid": "9606", "genes": 30806, "aggregation_function": "mean", "name": "GDS651", "version": 1.0, "instances": "37", "variables": 30808, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS651.tab", "compression": "gz" } ], [ [ "GDS652.tab" ], { "title": "Wax inducer 1 transcription factor overexpression", "description": "Analysis of leaves strongly and moderately overexpressing wax inducer 1 (WIN1), an ethylene response factor-like transcription factor. WIN1 activates several wax biosynthesis pathway genes leading to epidermal wax accumulation.", "type": "Expression profiling by array", "pubmed_id": "15070782", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1071", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS652", "description": "wild type", "sample_id": [ "GSM17240" ], "type": "genotype/variation", "id": "GDS652_1" }, { "dataset_id": "GDS652", "description": "WIN1 medium", "sample_id": [ "GSM17238" ], "type": "genotype/variation", "id": "GDS652_2" }, { "dataset_id": "GDS652", "description": "WIN1 strong", "sample_id": [ "GSM17239" ], "type": "genotype/variation", "id": "GDS652_3" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS652", "version": 1.0, "instances": "3", "variables": 7547, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS652.tab", "compression": "gz" } ], [ [ "GDS653.tab" ], { "title": "Neurotransmitter-specific neuronal gene expression", "description": "Examination of neurotransmitter-specific gene expression using FACS-isolated cholinergic neurons or neurons expressing glutamic acid decarboxylase 1 (Gad1). Neurons dissociated from nervous system or generated by culturing neural progenitor cells.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1060", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS653", "description": "cholinergic neurons", "sample_id": [ "GSM16944", "GSM16945", "GSM16946", "GSM16947", "GSM16948" ], "type": "cell type", "id": "GDS653_1" }, { "dataset_id": "GDS653", "description": "Gad1 expressing neurons", "sample_id": [ "GSM16951", "GSM16952", "GSM16953", "GSM16954", "GSM16956" ], "type": "cell type", "id": "GDS653_2" }, { "dataset_id": "GDS653", "description": "cholinergic/Gad1 negative", "sample_id": [ "GSM16893", "GSM16894", "GSM16949", "GSM16950", "GSM16955" ], "type": "cell type", "id": "GDS653_3" }, { "dataset_id": "GDS653", "description": "embryo cell culture", "sample_id": [ "GSM16893", "GSM16894", "GSM16944", "GSM16945", "GSM16946", "GSM16947", "GSM16949", "GSM16950", "GSM16951", "GSM16952", "GSM16953", "GSM16954" ], "type": "protocol", "id": "GDS653_4" }, { "dataset_id": "GDS653", "description": "dissociated larval brain", "sample_id": [ "GSM16948", "GSM16955", "GSM16956" ], "type": "protocol", "id": "GDS653_5" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS653", "version": 1.0, "instances": "15", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS653.tab", "compression": "gz" } ], [ [ "GDS654.tab" ], { "title": "Cardiac hypertrophy induced by exercise", "description": "Analysis of heart left ventricles from animals subjected to 7 weeks treadmill exercise compared with sedentary controls. Provides insight into molecular mechanisms of left ventricular hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "15943803", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE739", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS654", "description": "sedentary", "sample_id": [ "GSM11210", "GSM11211", "GSM11212", "GSM11213", "GSM11214", "GSM11215" ], "type": "protocol", "id": "GDS654_1" }, { "dataset_id": "GDS654", "description": "active", "sample_id": [ "GSM11204", "GSM11205", "GSM11206", "GSM11207", "GSM11208", "GSM11209" ], "type": "protocol", "id": "GDS654_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS654", "version": 1.0, "instances": "12", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS654.tab", "compression": "gz" } ], [ [ "GDS656.tab" ], { "title": "Retina injury response time course", "description": "Examination of injured retinas from male Sprague-Dawleys. Retinas scraped and examined at 4 hours, 1, 3, 7, and 30 days post-injury. Results help characterize distinct phases of retinal injury response.", "type": "Expression profiling by array", "pubmed_id": [ "15277499", "19936100" ], "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1001", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS656", "description": "control", "sample_id": [ "GSM15760", "GSM15761", "GSM15762" ], "type": "protocol", "id": "GDS656_1" }, { "dataset_id": "GDS656", "description": "injured", "sample_id": [ "GSM15763", "GSM15764", "GSM15765", "GSM15766", "GSM15768", "GSM15769", "GSM15770", "GSM15772", "GSM15773", "GSM15779", "GSM15780", "GSM15781", "GSM15782", "GSM15783", "GSM15784" ], "type": "protocol", "id": "GDS656_2" }, { "dataset_id": "GDS656", "description": "control", "sample_id": [ "GSM15760", "GSM15761", "GSM15762" ], "type": "time", "id": "GDS656_3" }, { "dataset_id": "GDS656", "description": "4 h", "sample_id": [ "GSM15763", "GSM15764", "GSM15765" ], "type": "time", "id": "GDS656_4" }, { "dataset_id": "GDS656", "description": "1 d", "sample_id": [ "GSM15766", "GSM15768", "GSM15769" ], "type": "time", "id": "GDS656_5" }, { "dataset_id": "GDS656", "description": "3 d", "sample_id": [ "GSM15770", "GSM15772", "GSM15773" ], "type": "time", "id": "GDS656_6" }, { "dataset_id": "GDS656", "description": "7 d", "sample_id": [ "GSM15779", "GSM15780", "GSM15781" ], "type": "time", "id": "GDS656_7" }, { "dataset_id": "GDS656", "description": "30 d", "sample_id": [ "GSM15782", "GSM15783", "GSM15784" ], "type": "time", "id": "GDS656_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS656", "version": 1.0, "instances": "18", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS656.tab", "compression": "gz" } ], [ [ "GDS657.tab" ], { "title": "Ligament healing and effect of hindlimb unloading", "description": "Examination of effect of hindlimb unloading on healing of medial collateral ligaments 3 weeks after injury. Hindlimb unloading alters gene expression patterns in wound healing ligaments leading to delayed healing response.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1105", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS657", "description": "loaded", "sample_id": [ "GSM18238", "GSM18239", "GSM18240", "GSM18241" ], "type": "protocol", "id": "GDS657_1" }, { "dataset_id": "GDS657", "description": "unloaded", "sample_id": [ "GSM18242", "GSM18243", "GSM18244", "GSM18245" ], "type": "protocol", "id": "GDS657_2" }, { "dataset_id": "GDS657", "description": "uninjured", "sample_id": [ "GSM18238", "GSM18239", "GSM18242", "GSM18243" ], "type": "stress", "id": "GDS657_3" }, { "dataset_id": "GDS657", "description": "injured", "sample_id": [ "GSM18240", "GSM18241", "GSM18244", "GSM18245" ], "type": "stress", "id": "GDS657_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS657", "version": 1.0, "instances": "8", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS657.tab", "compression": "gz" } ], [ [ "GDS658.tab" ], { "title": "Thymocyte selection by agonist", "description": "Analysis of CD8 alpha beta cells in reaggregation thymic organ culture (RTOC) selected by natural ligands, CD8 alpha beta RTOC cells selected by low-dose agonist (100 nM Smcy), and CD8 alpha alpha RTOC cells selected by high-dose agonist (10 mM Smcy).", "type": "Expression profiling by array", "pubmed_id": "15133507", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1112", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS658", "description": "no peptide", "sample_id": [ "GSM18331", "GSM18332", "GSM18333", "GSM18334" ], "type": "dose", "id": "GDS658_1" }, { "dataset_id": "GDS658", "description": "100 nM Smcy", "sample_id": [ "GSM18335", "GSM18336", "GSM18337", "GSM18338" ], "type": "dose", "id": "GDS658_2" }, { "dataset_id": "GDS658", "description": "10 uM Smcy", "sample_id": [ "GSM18339", "GSM18340", "GSM18341", "GSM18342" ], "type": "dose", "id": "GDS658_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS658", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS658.tab", "compression": "gz" } ], [ [ "GDS659.tab" ], { "title": "Spinal cord development", "description": "Comparison of L4-L6 spinal cord sections of 2 and 12 day old animals. Results provide insight into development of motoneurons and their synaptic inputs.", "type": "Expression profiling by array", "pubmed_id": "15152019", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1130", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS659", "description": "2 d", "sample_id": [ "GSM18528", "GSM18529" ], "type": "age", "id": "GDS659_1" }, { "dataset_id": "GDS659", "description": "12 d", "sample_id": [ "GSM18530", "GSM18531" ], "type": "age", "id": "GDS659_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS659", "version": 1.0, "instances": "4", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS659.tab", "compression": "gz" } ], [ [ "GDS660.tab" ], { "title": "Testis developmental time course: embryonic (MG-U74A)", "description": "Time course of gene expression in BL/6-129 embryonic testis from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1358", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS660", "description": "11.5 dpc", "sample_id": [ "GSM21973", "GSM21976" ], "type": "development stage", "id": "GDS660_1" }, { "dataset_id": "GDS660", "description": "12.5 dpc", "sample_id": [ "GSM21979", "GSM21982" ], "type": "development stage", "id": "GDS660_2" }, { "dataset_id": "GDS660", "description": "14.5 dpc", "sample_id": [ "GSM21985", "GSM21988" ], "type": "development stage", "id": "GDS660_3" }, { "dataset_id": "GDS660", "description": "16.5 dpc", "sample_id": [ "GSM21991", "GSM21994" ], "type": "development stage", "id": "GDS660_4" }, { "dataset_id": "GDS660", "description": "18.5 dpc", "sample_id": [ "GSM21997", "GSM22000" ], "type": "development stage", "id": "GDS660_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS660", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS660.tab", "compression": "gz" } ], [ [ "GDS661.tab" ], { "title": "Testis developmental time course: embryonic (MG-U74B)", "description": "Time course of gene expression in BL/6-129 embryonic testis from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1358", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS661", "description": "11.5 dpc", "sample_id": [ "GSM21974", "GSM21977" ], "type": "development stage", "id": "GDS661_1" }, { "dataset_id": "GDS661", "description": "12.5 dpc", "sample_id": [ "GSM21980", "GSM21983" ], "type": "development stage", "id": "GDS661_2" }, { "dataset_id": "GDS661", "description": "14.5 dpc", "sample_id": [ "GSM21986", "GSM21989" ], "type": "development stage", "id": "GDS661_3" }, { "dataset_id": "GDS661", "description": "16.5 dpc", "sample_id": [ "GSM21992", "GSM21995" ], "type": "development stage", "id": "GDS661_4" }, { "dataset_id": "GDS661", "description": "18.5 dpc", "sample_id": [ "GSM21998", "GSM22001" ], "type": "development stage", "id": "GDS661_5" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS661", "version": 1.0, "instances": "10", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS661.tab", "compression": "gz" } ], [ [ "GDS662.tab" ], { "title": "Testis developmental time course: embryonic (MG-U74C)", "description": "Time course of gene expression in BL/6-129 embryonic testis from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1358", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS662", "description": "11.5 dpc", "sample_id": [ "GSM21975", "GSM21978" ], "type": "development stage", "id": "GDS662_1" }, { "dataset_id": "GDS662", "description": "12.5 dpc", "sample_id": [ "GSM21981", "GSM21984" ], "type": "development stage", "id": "GDS662_2" }, { "dataset_id": "GDS662", "description": "14.5 dpc", "sample_id": [ "GSM21987", "GSM21990" ], "type": "development stage", "id": "GDS662_3" }, { "dataset_id": "GDS662", "description": "16.5 dpc", "sample_id": [ "GSM21993", "GSM21996" ], "type": "development stage", "id": "GDS662_4" }, { "dataset_id": "GDS662", "description": "18.5 dpc", "sample_id": [ "GSM21999", "GSM22002" ], "type": "development stage", "id": "GDS662_5" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS662", "version": 1.0, "instances": "10", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS662.tab", "compression": "gz" } ], [ [ "GDS663.tab" ], { "title": "Ovary developmental time course: embryonic (MG-U74A)", "description": "Time course of gene expression in BL/6-129 embryonic ovary from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1359", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS663", "description": "11.5 dpc", "sample_id": [ "GSM22003", "GSM22006" ], "type": "development stage", "id": "GDS663_1" }, { "dataset_id": "GDS663", "description": "12.5 dpc", "sample_id": [ "GSM22009", "GSM22012" ], "type": "development stage", "id": "GDS663_2" }, { "dataset_id": "GDS663", "description": "14.5 dpc", "sample_id": [ "GSM22015", "GSM22018" ], "type": "development stage", "id": "GDS663_3" }, { "dataset_id": "GDS663", "description": "16.5 dpc", "sample_id": [ "GSM22021", "GSM22024" ], "type": "development stage", "id": "GDS663_4" }, { "dataset_id": "GDS663", "description": "18.5 dpc", "sample_id": [ "GSM22027", "GSM22030" ], "type": "development stage", "id": "GDS663_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS663", "version": 1.0, "instances": "10", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS663.tab", "compression": "gz" } ], [ [ "GDS664.tab" ], { "title": "mRNA splicing factor mutant at permissive and restrictive temperatures", "description": "Analysis of mutant defective in dU2AF50 (large subunit of pre-mRNA splicing factor U2AF). Mutant examined after growth at permissive (25\u00b0C) and restrictive (30\u00b0C) temperatures in reference to wild type.", "type": "Expression profiling by array", "pubmed_id": "15200955", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1345", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS664", "description": "wt", "sample_id": [ "GSM21864", "GSM21865", "GSM21866", "GSM21867", "GSM21868", "GSM21869" ], "type": "genotype/variation", "id": "GDS664_1" }, { "dataset_id": "GDS664", "description": "mutant", "sample_id": [ "GSM21860", "GSM21861", "GSM21862", "GSM21863", "GSM21870", "GSM21871" ], "type": "genotype/variation", "id": "GDS664_2" }, { "dataset_id": "GDS664", "description": "25\u00b0C", "sample_id": [ "GSM21860", "GSM21861", "GSM21862", "GSM21864", "GSM21865", "GSM21866" ], "type": "temperature", "id": "GDS664_3" }, { "dataset_id": "GDS664", "description": "30\u00b0C", "sample_id": [ "GSM21863", "GSM21867", "GSM21868", "GSM21869", "GSM21870", "GSM21871" ], "type": "temperature", "id": "GDS664_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS664", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS664.tab", "compression": "gz" } ], [ [ "GDS665.tab" ], { "title": "Ovary developmental time course: embryonic (MG-U74B)", "description": "Time course of gene expression in BL/6-129 embryonic ovary from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1359", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS665", "description": "11.5 dpc", "sample_id": [ "GSM22004", "GSM22007" ], "type": "development stage", "id": "GDS665_1" }, { "dataset_id": "GDS665", "description": "12.5 dpc", "sample_id": [ "GSM22010", "GSM22013" ], "type": "development stage", "id": "GDS665_2" }, { "dataset_id": "GDS665", "description": "14.5 dpc", "sample_id": [ "GSM22016", "GSM22019" ], "type": "development stage", "id": "GDS665_3" }, { "dataset_id": "GDS665", "description": "16.5 dpc", "sample_id": [ "GSM22022", "GSM22025" ], "type": "development stage", "id": "GDS665_4" }, { "dataset_id": "GDS665", "description": "18.5 dpc", "sample_id": [ "GSM22028", "GSM22031" ], "type": "development stage", "id": "GDS665_5" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS665", "version": 1.0, "instances": "10", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS665.tab", "compression": "gz" } ], [ [ "GDS666.tab" ], { "title": "Ovary developmental time course: embryonic (MG-U74C)", "description": "Time course of gene expression in BL/6-129 embryonic ovary from the time of the indifferent gonad (11.5 days post coitum) to birth (18.5 days post coitum).", "type": "Expression profiling by array", "pubmed_id": "15496517", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1359", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS666", "description": "11.5 dpc", "sample_id": [ "GSM22005", "GSM22008" ], "type": "development stage", "id": "GDS666_1" }, { "dataset_id": "GDS666", "description": "12.5 dpc", "sample_id": [ "GSM22011", "GSM22014" ], "type": "development stage", "id": "GDS666_2" }, { "dataset_id": "GDS666", "description": "14.5 dpc", "sample_id": [ "GSM22017", "GSM22020" ], "type": "development stage", "id": "GDS666_3" }, { "dataset_id": "GDS666", "description": "16.5 dpc", "sample_id": [ "GSM22023", "GSM22026" ], "type": "development stage", "id": "GDS666_4" }, { "dataset_id": "GDS666", "description": "18.5 dpc", "sample_id": [ "GSM22029", "GSM22032" ], "type": "development stage", "id": "GDS666_5" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS666", "version": 1.0, "instances": "10", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS666.tab", "compression": "gz" } ], [ [ "GDS667.tab" ], { "title": "mRNA splicing factor knock-down and nucleo-cytoplasmic mRNA distribution", "description": "Examination of cytoplasmic and nuclear mRNA distribution in D.mel2 cell line after RNAi knock-down of dU2AF50 (large subunit of pre-mRNA splicing factor U2AF). dU2AF50 knock-down analyzed in reference to non-specific RNAi knock-down.", "type": "Expression profiling by array", "pubmed_id": "15200955", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1344", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS667", "description": "non-specific knock-down", "sample_id": [ "GSM21848", "GSM21849", "GSM21850", "GSM21851", "GSM21852", "GSM21853" ], "type": "protocol", "id": "GDS667_1" }, { "dataset_id": "GDS667", "description": "dU2AF50 knock-down", "sample_id": [ "GSM21854", "GSM21855", "GSM21856", "GSM21857", "GSM21858", "GSM21859" ], "type": "protocol", "id": "GDS667_2" }, { "dataset_id": "GDS667", "description": "cytoplasmic", "sample_id": [ "GSM21848", "GSM21850", "GSM21852", "GSM21854", "GSM21856", "GSM21858" ], "type": "other", "id": "GDS667_3" }, { "dataset_id": "GDS667", "description": "nuclear", "sample_id": [ "GSM21849", "GSM21851", "GSM21853", "GSM21855", "GSM21857", "GSM21859" ], "type": "other", "id": "GDS667_4" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS667", "version": 1.0, "instances": "12", "variables": 12130, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS667.tab", "compression": "gz" } ], [ [ "GDS668.tab" ], { "title": "Indole acetic acid treatment time course (ATH1)", "description": "Analysis of 10-12 day Columbia-O seedlings treated with 0.1 uM indole acetic acid (IAA) auxin for 1 and 3 hours. Treated seedlings analyzed in reference to untreated control. Part of a study comparing AG and ATH1 arrays.", "type": "Expression profiling by array", "pubmed_id": "15086809", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1111", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS668", "description": "untreated", "sample_id": [ "GSM18228", "GSM18229" ], "type": "dose", "id": "GDS668_1" }, { "dataset_id": "GDS668", "description": "0.1 uM IAA", "sample_id": [ "GSM18290", "GSM18291", "GSM18294", "GSM18295" ], "type": "dose", "id": "GDS668_2" }, { "dataset_id": "GDS668", "description": "0 h", "sample_id": [ "GSM18228", "GSM18229" ], "type": "time", "id": "GDS668_3" }, { "dataset_id": "GDS668", "description": "1 h", "sample_id": [ "GSM18290", "GSM18291" ], "type": "time", "id": "GDS668_4" }, { "dataset_id": "GDS668", "description": "3 h", "sample_id": [ "GSM18294", "GSM18295" ], "type": "time", "id": "GDS668_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS668", "version": 1.0, "instances": "6", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS668.tab", "compression": "gz" } ], [ [ "GDS670.tab" ], { "title": "Emphysema lung tissue expression profiling", "description": "Expression profiling of lung tissue from normal individuals, and patients with either 'usual' emphysema or alpha-1 antitrypsin (AAT) deficiency-related emphysema. Global reduction in gene expression observed in emphysemic lungs.", "type": "Expression profiling by array", "pubmed_id": "15284076", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1122", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS670", "description": "normal", "sample_id": [ "GSM18403", "GSM18404", "GSM18405", "GSM18406", "GSM18407" ], "type": "disease state", "id": "GDS670_1" }, { "dataset_id": "GDS670", "description": "AAT deficiency-related emphysema", "sample_id": [ "GSM18408", "GSM18409", "GSM18410", "GSM18411", "GSM18412" ], "type": "disease state", "id": "GDS670_2" }, { "dataset_id": "GDS670", "description": "usual emphysema", "sample_id": [ "GSM18413", "GSM18414", "GSM18415", "GSM18416", "GSM18417" ], "type": "disease state", "id": "GDS670_3" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS670", "version": 1.0, "instances": "15", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS670.tab", "compression": "gz" } ], [ [ "GDS671.tab" ], { "title": "Indole acetic acid treatment time course (AG)", "description": "Analysis of 10-12 day Columbia-O seedlings treated with 0.1 uM indole acetic acid (IAA) auxin for 1 and 3 hours. Treated seedlings analyzed in reference to untreated control. Part of a study comparing AG and ATH1 arrays.", "type": "Expression profiling by array", "pubmed_id": "15086809", "platform": "GPL71", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8297", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1111", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS671", "description": "untreated", "sample_id": [ "GSM18325", "GSM18326" ], "type": "dose", "id": "GDS671_1" }, { "dataset_id": "GDS671", "description": "0.1 uM IAA", "sample_id": [ "GSM18327", "GSM18328", "GSM18329", "GSM18330" ], "type": "dose", "id": "GDS671_2" }, { "dataset_id": "GDS671", "description": "0 h", "sample_id": [ "GSM18325", "GSM18326" ], "type": "time", "id": "GDS671_3" }, { "dataset_id": "GDS671", "description": "1 h", "sample_id": [ "GSM18327", "GSM18328" ], "type": "time", "id": "GDS671_4" }, { "dataset_id": "GDS671", "description": "3 h", "sample_id": [ "GSM18329", "GSM18330" ], "type": "time", "id": "GDS671_5" } ], "taxid": "3702", "genes": 7545, "aggregation_function": "mean", "name": "GDS671", "version": 1.0, "instances": "6", "variables": 7548, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS671.tab", "compression": "gz" } ], [ [ "GDS672.tab" ], { "title": "Indole acetic acid treatment: dose response and time course", "description": "Analysis of 10-12 day Columbia-O seedlings treated with either 0.1 uM or 1.0 uM indole acetic acid (IAA) auxin for 1 and 3 hours. Treated seedlings analyzed in reference to untreated control. Part of a study assessing the performance of the ATH1 array.", "type": "Expression profiling by array", "pubmed_id": "15086809", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE1110", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS672", "description": "hybridization 1", "sample_id": [ "GSM18228", "GSM18230", "GSM18232", "GSM18290", "GSM18292", "GSM18294", "GSM18296", "GSM18298", "GSM18300", "GSM18302", "GSM18304" ], "type": "protocol", "id": "GDS672_1" }, { "dataset_id": "GDS672", "description": "hybridization 2", "sample_id": [ "GSM18229", "GSM18231", "GSM18233", "GSM18291", "GSM18293", "GSM18295", "GSM18297", "GSM18299", "GSM18301", "GSM18303", "GSM18305" ], "type": "protocol", "id": "GDS672_2" }, { "dataset_id": "GDS672", "description": "untreated", "sample_id": [ "GSM18228", "GSM18229", "GSM18230", "GSM18231", "GSM18232", "GSM18233" ], "type": "dose", "id": "GDS672_3" }, { "dataset_id": "GDS672", "description": "0.1 uM IAA", "sample_id": [ "GSM18290", "GSM18291", "GSM18292", "GSM18293", "GSM18294", "GSM18295", "GSM18296", "GSM18297" ], "type": "dose", "id": "GDS672_4" }, { "dataset_id": "GDS672", "description": "1.0 uM IAA", "sample_id": [ "GSM18298", "GSM18299", "GSM18300", "GSM18301", "GSM18302", "GSM18303", "GSM18304", "GSM18305" ], "type": "dose", "id": "GDS672_5" }, { "dataset_id": "GDS672", "description": "0 h", "sample_id": [ "GSM18228", "GSM18229", "GSM18230", "GSM18231", "GSM18232", "GSM18233" ], "type": "time", "id": "GDS672_6" }, { "dataset_id": "GDS672", "description": "1 h", "sample_id": [ "GSM18290", "GSM18291", "GSM18292", "GSM18293", "GSM18298", "GSM18299", "GSM18300", "GSM18301" ], "type": "time", "id": "GDS672_7" }, { "dataset_id": "GDS672", "description": "3 h", "sample_id": [ "GSM18294", "GSM18295", "GSM18296", "GSM18297", "GSM18302", "GSM18303", "GSM18304", "GSM18305" ], "type": "time", "id": "GDS672_8" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS672", "version": 1.0, "instances": "22", "variables": 22285, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS672.tab", "compression": "gz" } ], [ [ "GDS677.tab" ], { "title": "4-nonylphenol effect on liver", "description": "Analysis of FVB/NJ liver treated with 45 mg/kg/day 4-nonylphenol (4-NP) for 32 weeks. 4-NP is an industrial waste and elicits estrogen-like responses. Results provide insight into molecular events altered by 4-NP.", "type": "Expression profiling by array", "pubmed_id": "16013040", "platform": "GPL144", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "1185", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1083", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS677", "description": "control", "sample_id": [ "GSM17283", "GSM17284" ], "type": "agent", "id": "GDS677_1" }, { "dataset_id": "GDS677", "description": "4-nonylphenol", "sample_id": [ "GSM17285", "GSM17286" ], "type": "agent", "id": "GDS677_2" } ], "taxid": "10090", "genes": 1184, "aggregation_function": "mean", "name": "GDS677", "version": 1.0, "instances": "4", "variables": 1186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS677.tab", "compression": "gz" } ], [ [ "GDS679.tab" ], { "title": "Osteogenesis induced by bone morphogenic protein 2", "description": "Response of calvarial MC3T3-1b cells to osteogenic stimulus (beta-glycerophosphate (GP), ascorbic acid (AA) and bone morphogenic protein 2 (BMP-2)) for 0, 1 and 3 days. Notch, Wnt and TGF-β signaling pathways are activated in osteogenesis.", "type": "Expression profiling by array", "pubmed_id": "15178686", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1131", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS679", "description": "0 day", "sample_id": [ "GSM18546", "GSM18551", "GSM18556" ], "type": "time", "id": "GDS679_1" }, { "dataset_id": "GDS679", "description": "1 day", "sample_id": [ "GSM18547", "GSM18548", "GSM18552", "GSM18553", "GSM18557", "GSM18558" ], "type": "time", "id": "GDS679_2" }, { "dataset_id": "GDS679", "description": "3 day", "sample_id": [ "GSM18549", "GSM18550", "GSM18554", "GSM18555", "GSM18559", "GSM18560" ], "type": "time", "id": "GDS679_3" }, { "dataset_id": "GDS679", "description": "control medium", "sample_id": [ "GSM18546", "GSM18551", "GSM18556" ], "type": "growth protocol", "id": "GDS679_4" }, { "dataset_id": "GDS679", "description": "GP", "sample_id": [ "GSM18547", "GSM18549", "GSM18552", "GSM18554", "GSM18557", "GSM18559" ], "type": "growth protocol", "id": "GDS679_5" }, { "dataset_id": "GDS679", "description": "GP/AA/BMP-2", "sample_id": [ "GSM18548", "GSM18550", "GSM18553", "GSM18555", "GSM18558", "GSM18560" ], "type": "growth protocol", "id": "GDS679_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS679", "version": 1.0, "instances": "15", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS679.tab", "compression": "gz" } ], [ [ "GDS680.tab" ], { "title": "Oxygen deprivation expression profiling of various mutants", "description": "Examination of K-12 MG1655 deletion strains grown in either aerobic or anaerobic conditions. Strains deleted for transcriptional regulators in oxygen response. 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Dosage-dependent over-expression of genes in trisomic region of Ts1Cje observed.", "type": "Expression profiling by array", "pubmed_id": "15138197", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1294", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS682", "description": "normal", "sample_id": [ "GSM21052", "GSM21053", "GSM21054", "GSM21055", "GSM21056", "GSM21057" ], "type": "disease state", "id": "GDS682_1" }, { "dataset_id": "GDS682", "description": "Down syndrome", "sample_id": [ "GSM21058", "GSM21059", "GSM21060", "GSM21061", "GSM21062", "GSM21063" ], "type": "disease state", "id": "GDS682_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS682", "version": 1.0, "instances": "12", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS682.tab", "compression": "gz" } ], [ [ "GDS683.tab" ], { "title": "Oxidative stress and Snell dwarf liver", "description": "Time course of long-lived Snell dwarf (Pit1 mutation) and wild type response to oxidative stress induced by 3-nitropropionic acid (3-NPA). Livers examined at several time points up to 42 hours.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1381", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS683", "description": "Snell dwarf", "sample_id": [ "GSM22525", "GSM22528", "GSM22529", "GSM22530" ], "type": "genotype/variation", "id": "GDS683_1" }, { "dataset_id": "GDS683", "description": "wild type", "sample_id": [ "GSM22531", "GSM22532", "GSM22533", "GSM22534", "GSM22535" ], "type": "genotype/variation", "id": "GDS683_2" }, { "dataset_id": "GDS683", "description": "0 h", "sample_id": [ "GSM22525", "GSM22531" ], "type": "time", "id": "GDS683_3" }, { "dataset_id": "GDS683", "description": "0.25 h", "sample_id": [ "GSM22528", "GSM22532" ], "type": "time", "id": "GDS683_4" }, { "dataset_id": "GDS683", "description": "1 h", "sample_id": [ "GSM22529", "GSM22533" ], "type": "time", "id": "GDS683_5" }, { "dataset_id": "GDS683", "description": "20 h", "sample_id": [ "GSM22530", "GSM22534" ], "type": "time", "id": "GDS683_6" }, { "dataset_id": "GDS683", "description": "42 h", "sample_id": [ "GSM22535" ], "type": "time", "id": "GDS683_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS683", "version": 1.0, "instances": "9", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS683.tab", "compression": "gz" } ], [ [ "GDS684.tab" ], { "title": "T regulatory and T effector cells in prediabetic lesion", "description": "Comparison of T regulatory (CD4+CD25+CD69-) and T effector (CD4+CD25lo/-CD69+/-) cells isolated from the pancreatic lesion of 3-4 week old BDC2.5 transgenic NOD mice before type 1 diabetes onset.", "type": "Expression profiling by array", "pubmed_id": [ "16301745", "15184501" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1419", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS684", "description": "T regulatory cell", "sample_id": [ "GSM23403", "GSM23404", "GSM23405" ], "type": "cell type", "id": "GDS684_1" }, { "dataset_id": "GDS684", "description": "T effector cell", "sample_id": [ "GSM23438", "GSM23439", "GSM23440", "GSM23441", "GSM23442" ], "type": "cell type", "id": "GDS684_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS684", "version": 1.0, "instances": "8", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS684.tab", "compression": "gz" } ], [ [ "GDS685.tab" ], { "title": "YODA MAPKK inactivation and constitutive activation effect on stomata", "description": "Examination of gene expression in 7 days post-germination seedlings with either an inactive or a constitutively active YODA MAPKK. Inactivating YODA results in excess stomata, and constitutively activating YODA eliminates stomata.", "type": "Expression profiling by array", "pubmed_id": "15178800", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE991", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS685", "description": "C24 ecotype", "sample_id": [ "GSM15669", "GSM15670", "GSM15671", "GSM15661", "GSM15662", "GSM15663", "GSM15664" ], "type": "strain", "id": "GDS685_1" }, { "dataset_id": "GDS685", "description": "Ler ecotype", "sample_id": [ "GSM15672", "GSM15673", "GSM15674", "GSM15665", "GSM15666", "GSM15667", "GSM15668" ], "type": "strain", "id": "GDS685_2" }, { "dataset_id": "GDS685", "description": "wild type", "sample_id": [ "GSM15669", "GSM15670", "GSM15671", "GSM15672", "GSM15673", "GSM15674" ], "type": "genotype/variation", "id": "GDS685_3" }, { "dataset_id": "GDS685", "description": "inactive YODA", "sample_id": [ "GSM15661", "GSM15662", "GSM15663", "GSM15664" ], "type": "genotype/variation", "id": "GDS685_4" }, { "dataset_id": "GDS685", "description": "constitutive YODA", "sample_id": [ "GSM15665", "GSM15666", "GSM15667", "GSM15668" ], "type": "genotype/variation", "id": "GDS685_5" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS685", "version": 1.0, "instances": "14", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS685.tab", "compression": "gz" } ], [ [ "GDS686.tab" ], { "title": "Store-operated calcium entry in HEK-293 cells", "description": "Comparison of HEK-293-derived monoclonal cell lines with high or low levels of store-operated Ca2+ entry (SOCE). Levels of SOCE confirmed by monitoring thapsigargin-stimulated Ba2+ entry.", "type": "Expression profiling by array", "pubmed_id": "15623568", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "22", "value_type": "count", "reference_series": "GSE1309", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS686", "description": "H1", "sample_id": [ "GSM21234", "GSM21235" ], "type": "cell line", "id": "GDS686_1" }, { "dataset_id": "GDS686", "description": "H39", "sample_id": [ "GSM21258", "GSM21259" ], "type": "cell line", "id": "GDS686_2" }, { "dataset_id": "GDS686", "description": "H36", "sample_id": [ "GSM21260", "GSM21261", "GSM21395", "GSM21396" ], "type": "cell line", "id": "GDS686_3" }, { "dataset_id": "GDS686", "description": "H15", "sample_id": [ "GSM21262", "GSM21263" ], "type": "cell line", "id": "GDS686_4" }, { "dataset_id": "GDS686", "description": "H24", "sample_id": [ "GSM21264", "GSM21378" ], "type": "cell line", "id": "GDS686_5" }, { "dataset_id": "GDS686", "description": "L3", "sample_id": [ "GSM21379", "GSM21380" ], "type": "cell line", "id": "GDS686_6" }, { "dataset_id": "GDS686", "description": "L28", "sample_id": [ "GSM21385", "GSM21391" ], "type": "cell line", "id": "GDS686_7" }, { "dataset_id": "GDS686", "description": "L29", "sample_id": [ "GSM21393", "GSM21394" ], "type": "cell line", "id": "GDS686_8" }, { "dataset_id": "GDS686", "description": "HEK-293", "sample_id": [ "GSM21381", "GSM21382", "GSM21400", "GSM21401" ], "type": "cell line", "id": "GDS686_9" }, { "dataset_id": "GDS686", "description": "high level SOCE", "sample_id": [ "GSM21234", "GSM21235", "GSM21258", "GSM21259", "GSM21260", "GSM21261", "GSM21262", "GSM21263", "GSM21264", "GSM21378", "GSM21395", "GSM21396" ], "type": "other", "id": "GDS686_10" }, { "dataset_id": "GDS686", "description": "low level SOCE", "sample_id": [ "GSM21379", "GSM21380", "GSM21385", "GSM21391", "GSM21393", "GSM21394" ], "type": "other", "id": "GDS686_11" }, { "dataset_id": "GDS686", "description": "parental", "sample_id": [ "GSM21381", "GSM21382", "GSM21400", "GSM21401" ], "type": "other", "id": "GDS686_12" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS686", "version": 1.0, "instances": "22", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS686.tab", "compression": "gz" } ], [ [ "GDS687.tab" ], { "title": "Dermal papilla-induced epithelial stem cell differentiation", "description": "Analysis of dermal papilla (DP) induced epithelial stem cell differentiation. Keratinocyte stem cells from bulge area of telogen hair follicle co-cultured with DP over a 5 day period.", "type": "Expression profiling by array", "pubmed_id": "15292489", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1470", "order": "ordered", "update_date": "Aug 31 2004", "subsets": [ { "dataset_id": "GDS687", "description": "day 1", "sample_id": [ "GSM24429" ], "type": "time", "id": "GDS687_1" }, { "dataset_id": "GDS687", "description": "day 2", "sample_id": [ "GSM24430" ], "type": "time", "id": "GDS687_2" }, { "dataset_id": "GDS687", "description": "day 5", "sample_id": [ "GSM24431" ], "type": "time", "id": "GDS687_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS687", "version": 1.0, "instances": "3", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS687.tab", "compression": "gz" } ], [ [ "GDS69.tab" ], { "title": "Copper regulon", "description": "Differential gene expression under growth conditions of excess copper or copper deficiency, regulated by Mac1 or Ace1 transcriptional activators.", "type": "Expression profiling by array", "pubmed_id": "10922376", "platform": "GPL65", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "8832", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE26", "order": "none", "update_date": "Apr 04 2003", "subsets": [ { "dataset_id": "GDS69", "description": "copper deficient", "sample_id": [ "GSM1083", "GSM1084" ], "type": "protocol", "id": "GDS69_1" }, { "dataset_id": "GDS69", "description": "copper excess", "sample_id": [ "GSM1085", "GSM1089" ], "type": "protocol", "id": "GDS69_2" }, { "dataset_id": "GDS69", "description": "constitutively active Mac1", "sample_id": [ "GSM1082", "GSM1087" ], "type": "protocol", "id": "GDS69_3" } ], "taxid": "4932", "genes": 6361, "aggregation_function": "mean", "name": "GDS69", "version": 1.0, "instances": "6", "variables": 6363, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS69.tab", "compression": "gz" } ], [ [ "GDS690.tab" ], { "title": "Intestinal epithelial cell immune response", "description": "Analysis of intestinal epithelial cell immune response. 14 day old colon adenocarcinoma cell lines Caco-2 and T84 stimulated 4 hours with flagellin, or lymphotoxin beta or TNF alpha cytokines.", "type": "Expression profiling by array", "pubmed_id": "16012957", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1474", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS690", "description": "Caco-2", "sample_id": [ "GSM24832", "GSM24833", "GSM24834", "GSM24835", "GSM24836", "GSM24837", "GSM24838", "GSM24839", "GSM24840", "GSM24841", "GSM24842", "GSM24843" ], "type": "cell line", "id": "GDS690_1" }, { "dataset_id": "GDS690", "description": "T84", "sample_id": [ "GSM24844", "GSM24845", "GSM24846", "GSM24847", "GSM24848", "GSM24849", "GSM24850", "GSM24851", "GSM24852", "GSM24853", "GSM24854", "GSM24855" ], "type": "cell line", "id": "GDS690_2" }, { "dataset_id": "GDS690", "description": "control", "sample_id": [ "GSM24832", "GSM24833", "GSM24834", "GSM24844", "GSM24845", "GSM24846" ], "type": "agent", "id": "GDS690_3" }, { "dataset_id": "GDS690", "description": "flagellin", "sample_id": [ "GSM24835", "GSM24836", "GSM24837", "GSM24847", "GSM24848", "GSM24849" ], "type": "agent", "id": "GDS690_4" }, { "dataset_id": "GDS690", "description": "LTb", "sample_id": [ "GSM24838", "GSM24839", "GSM24840", "GSM24850", "GSM24851", "GSM24852" ], "type": "agent", "id": "GDS690_5" }, { "dataset_id": "GDS690", "description": "TNFa", "sample_id": [ "GSM24841", "GSM24842", "GSM24843", "GSM24853", "GSM24854", "GSM24855" ], "type": "agent", "id": "GDS690_6" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS690", "version": 1.0, "instances": "24", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS690.tab", "compression": "gz" } ], [ [ "GDS694.tab" ], { "title": "AtMYB23 MYB transcription factor target down-regulation", "description": "Examination of rosette leaves from 2 week old Columbia-0 transgenic seedlings expressing AtMYB23SRDX, a chimeric AtMYB23 MYB transcription factor with an SRDX repression domain. Seedlings expressing AtMYB23SRDX are defective in trichome development.", "type": "Expression profiling by array", "pubmed_id": "15668208", "platform": "GPL1323", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "28785", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1544", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS694", "description": "wild type", "sample_id": [ "GSM26454" ], "type": "strain", "id": "GDS694_1" }, { "dataset_id": "GDS694", "description": "AtMYB23SRDX", "sample_id": [ "GSM26455", "GSM26456" ], "type": "strain", "id": "GDS694_2" } ], "taxid": "3702", "genes": 27162, "aggregation_function": "mean", "name": "GDS694", "version": 1.0, "instances": "3", "variables": 27164, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS694.tab", "compression": "gz" } ], [ [ "GDS695.tab" ], { "title": "Cardiac and aortic endothelial cells", "description": "Gene expression profiles of endocardial (EE) and aortic (AE) endothelial cells. EE and AE genetic diversity in culture reflects in vivo physiological diversity.", "type": "Expression profiling by array", "pubmed_id": "15304623", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1478", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS695", "description": "aortic", "sample_id": [ "GSM25148" ], "type": "cell type", "id": "GDS695_1" }, { "dataset_id": "GDS695", "description": "endocardial", "sample_id": [ "GSM25149" ], "type": "cell type", "id": "GDS695_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS695", "version": 1.0, "instances": "2", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS695.tab", "compression": "gz" } ], [ [ "GDS696.tab" ], { "title": "Cardiac myocyte hypertrophy induced by fibronectin", "description": "Examination of neonatal ventricular myocytes plated on fibronectin coated dishes. Fibronectin elicits a hypertrophic response by clustering integrin receptors. Results provide insight into molecular events underlying cardiac hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "15306692", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1055", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS696", "description": "control", "sample_id": [ "GSM17077", "GSM17078" ], "type": "protocol", "id": "GDS696_1" }, { "dataset_id": "GDS696", "description": "fibronectin", "sample_id": [ "GSM17079", "GSM17080" ], "type": "protocol", "id": "GDS696_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS696", "version": 1.0, "instances": "4", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS696.tab", "compression": "gz" } ], [ [ "GDS698.tab" ], { "title": "Spermatogonial stem cell activity time course under various culture conditions (RAE230A)", "description": "Temporal analysis of stem cell activity examined in laminin binding testis germ cells cultured on either STO fibroblasts for 0 to 20 days or MSC-1 Sertoli cells for 20 days. Results provide insight into maintenance of stem cell activity.", "type": "Expression profiling by array", "pubmed_id": "15110708", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE830", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS698", "description": "0 d", "sample_id": [ "GSM12803", "GSM12806", "GSM12808", "GSM12811" ], "type": "time", "id": "GDS698_1" }, { "dataset_id": "GDS698", "description": "1 d", "sample_id": [ "GSM12795" ], "type": "time", "id": "GDS698_2" }, { "dataset_id": "GDS698", "description": "5 d", "sample_id": [ "GSM12797" ], "type": "time", "id": "GDS698_3" }, { "dataset_id": "GDS698", "description": "10 d", "sample_id": [ "GSM12799" ], "type": "time", "id": "GDS698_4" }, { "dataset_id": "GDS698", "description": "20 d", "sample_id": [ "GSM12801", "GSM12793" ], "type": "time", "id": "GDS698_5" }, { "dataset_id": "GDS698", "description": "interstitial", "sample_id": [ "GSM12803" ], "type": "cell type", "id": "GDS698_6" }, { "dataset_id": "GDS698", "description": "tubular", "sample_id": [ "GSM12808" ], "type": "cell type", "id": "GDS698_7" }, { "dataset_id": "GDS698", "description": "laminin non-binding", "sample_id": [ "GSM12806" ], "type": "cell type", "id": "GDS698_8" }, { "dataset_id": "GDS698", "description": "laminin binding", "sample_id": [ "GSM12811", "GSM12795", "GSM12797", "GSM12799", "GSM12801", "GSM12793" ], "type": "cell type", "id": "GDS698_9" }, { "dataset_id": "GDS698", "description": "control", "sample_id": [ "GSM12803", "GSM12806", "GSM12808", "GSM12811" ], "type": "growth protocol", "id": "GDS698_10" }, { "dataset_id": "GDS698", "description": "STO", "sample_id": [ "GSM12795", "GSM12797", "GSM12799", "GSM12801" ], "type": "growth protocol", "id": "GDS698_11" }, { "dataset_id": "GDS698", "description": "MSC-1", "sample_id": [ "GSM12793" ], "type": "growth protocol", "id": "GDS698_12" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS698", "version": 1.0, "instances": "9", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS698.tab", "compression": "gz" } ], [ [ "GDS699.tab" ], { "title": "Spermatogonial stem cell activity time course under various culture conditions (RAE230B)", "description": "Temporal analysis of stem cell activity examined in laminin binding testis germ cells cultured on either STO fibroblasts for 0 to 20 days or MSC-1 Sertoli cells for 20 days. Results provide insight into maintenance of stem cell activity.", "type": "Expression profiling by array", "pubmed_id": "15110708", "platform": "GPL342", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15333", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE830", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS699", "description": "0 d", "sample_id": [ "GSM12804", "GSM12805", "GSM12807", "GSM12809" ], "type": "time", "id": "GDS699_1" }, { "dataset_id": "GDS699", "description": "1 d", "sample_id": [ "GSM12796" ], "type": "time", "id": "GDS699_2" }, { "dataset_id": "GDS699", "description": "5 d", "sample_id": [ "GSM12798" ], "type": "time", "id": "GDS699_3" }, { "dataset_id": "GDS699", "description": "10 d", "sample_id": [ "GSM12800" ], "type": "time", "id": "GDS699_4" }, { "dataset_id": "GDS699", "description": "20 d", "sample_id": [ "GSM12794", "GSM12802" ], "type": "time", "id": "GDS699_5" }, { "dataset_id": "GDS699", "description": "interstitial", "sample_id": [ "GSM12804" ], "type": "cell type", "id": "GDS699_6" }, { "dataset_id": "GDS699", "description": "tubular", "sample_id": [ "GSM12809" ], "type": "cell type", "id": "GDS699_7" }, { "dataset_id": "GDS699", "description": "laminin non-binding", "sample_id": [ "GSM12807" ], "type": "cell type", "id": "GDS699_8" }, { "dataset_id": "GDS699", "description": "laminin binding", "sample_id": [ "GSM12794", "GSM12796", "GSM12798", "GSM12800", "GSM12802", "GSM12805" ], "type": "cell type", "id": "GDS699_9" }, { "dataset_id": "GDS699", "description": "control", "sample_id": [ "GSM12804", "GSM12805", "GSM12807", "GSM12809" ], "type": "growth protocol", "id": "GDS699_10" }, { "dataset_id": "GDS699", "description": "STO", "sample_id": [ "GSM12796", "GSM12798", "GSM12800", "GSM12802" ], "type": "growth protocol", "id": "GDS699_11" }, { "dataset_id": "GDS699", "description": "MSC-1", "sample_id": [ "GSM12794" ], "type": "growth protocol", "id": "GDS699_12" } ], "taxid": "10116", "genes": 13318, "aggregation_function": "mean", "name": "GDS699", "version": 1.0, "instances": "9", "variables": 13322, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS699.tab", "compression": "gz" } ], [ [ "GDS700.tab" ], { "title": "Spermatogonial stem cell activity in testis laminin binding germ cells (MG-U74A)", "description": "Comparison of cultured laminin binding to non-binding germ cells from testes of 19-day-old neonates. Laminin binding germ cells are enriched in spermatogonial stem cells. Results provide insight into molecular events underlying stem cell activity.", "type": "Expression profiling by array", "pubmed_id": "15110708", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE829", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS700", "description": "interstitial", "sample_id": [ "GSM9910" ], "type": "cell type", "id": "GDS700_1" }, { "dataset_id": "GDS700", "description": "tubular", "sample_id": [ "GSM9913", "GSM12790" ], "type": "cell type", "id": "GDS700_2" }, { "dataset_id": "GDS700", "description": "laminin binding", "sample_id": [ "GSM12784", "GSM12787" ], "type": "cell type", "id": "GDS700_3" }, { "dataset_id": "GDS700", "description": "laminin non-binding", "sample_id": [ "GSM12778", "GSM12781" ], "type": "cell type", "id": "GDS700_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS700", "version": 1.0, "instances": "7", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS700.tab", "compression": "gz" } ], [ [ "GDS701.tab" ], { "title": "Spermatogonial stem cell activity in testis laminin binding germ cells (MG-U74B)", "description": "Comparison of cultured laminin binding to non-binding germ cells from testes of 19 day old neonates. Laminin binding germ cells are enriched in spermatogonial stem cells. Results provide insight into molecular events underlying stem cell activity.", "type": "Expression profiling by array", "pubmed_id": "15110708", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE829", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS701", "description": "interstitial", "sample_id": [ "GSM9911" ], "type": "cell type", "id": "GDS701_1" }, { "dataset_id": "GDS701", "description": "tubular", "sample_id": [ "GSM9914", "GSM12791" ], "type": "cell type", "id": "GDS701_2" }, { "dataset_id": "GDS701", "description": "laminin non-binding", "sample_id": [ "GSM12785", "GSM12788" ], "type": "cell type", "id": "GDS701_3" }, { "dataset_id": "GDS701", "description": "laminin binding", "sample_id": [ "GSM12779", "GSM12782" ], "type": "cell type", "id": "GDS701_4" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS701", "version": 1.0, "instances": "7", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS701.tab", "compression": "gz" } ], [ [ "GDS702.tab" ], { "title": "Extraocular, limb, and masticatory muscle comparison", "description": "Comparison of extraocular (EOM), masticatory (masseter), and hindlimb (gastrocnemius/soleus) muscle in 8 week old mice. EOM defined by distinct gene expression profile.", "type": "Expression profiling by array", "pubmed_id": "11572940", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1062", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS702", "description": "EOM", "sample_id": [ "GSM17197", "GSM17198", "GSM17199", "GSM17200", "GSM17201" ], "type": "tissue", "id": "GDS702_1" }, { "dataset_id": "GDS702", "description": "jaw muscle", "sample_id": [ "GSM17202", "GSM17203", "GSM17204", "GSM17205" ], "type": "tissue", "id": "GDS702_2" }, { "dataset_id": "GDS702", "description": "leg muscle", "sample_id": [ "GSM17206", "GSM17207", "GSM17208", "GSM17209", "GSM17210" ], "type": "tissue", "id": "GDS702_3" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS702", "version": 1.0, "instances": "14", "variables": 10254, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS702.tab", "compression": "gz" } ], [ [ "GDS703.tab" ], { "title": "Dystrophin-deficient mdx extraocular and leg muscle", "description": "Analysis of extraocular (EOM) and hindlimb (gastrocnemius/soleus) muscle in mdx (dystrophin-deficient; Duchenne muscular dystrophy model) mice at postnatal day 56.5. Highly specific changes observed between dystrophic (leg) and spared (EOM) muscle.", "type": "Expression profiling by array", "pubmed_id": "11823445", "platform": "GPL32", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12654", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1472", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS703", "description": "wild type", "sample_id": [ "GSM17197", "GSM17198", "GSM17199", "GSM17200", "GSM17201", "GSM17206", "GSM17207", "GSM17208", "GSM17209", "GSM17210" ], "type": "strain", "id": "GDS703_1" }, { "dataset_id": "GDS703", "description": "mdx", "sample_id": [ "GSM24806", "GSM24807", "GSM24808", "GSM24809", "GSM24810", "GSM24811", "GSM24812", "GSM24813", "GSM24814", "GSM24815" ], "type": "strain", "id": "GDS703_2" }, { "dataset_id": "GDS703", "description": "EOM", "sample_id": [ "GSM17197", "GSM17198", "GSM17199", "GSM17200", "GSM17201", "GSM24811", "GSM24812", "GSM24813", "GSM24814", "GSM24815" ], "type": "tissue", "id": "GDS703_3" }, { "dataset_id": "GDS703", "description": "leg muscle", "sample_id": [ "GSM17206", "GSM17207", "GSM17208", "GSM17209", "GSM17210", "GSM24806", "GSM24807", "GSM24808", "GSM24809", "GSM24810" ], "type": "tissue", "id": "GDS703_4" } ], "taxid": "10090", "genes": 10252, "aggregation_function": "mean", "name": "GDS703", "version": 1.0, "instances": "20", "variables": 10255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS703.tab", "compression": "gz" } ], [ [ "GDS704.tab" ], { "title": "Spermatogonial stem cell activity in testis laminin binding germ cells (MG-U74C )", "description": "Comparison of cultured laminin binding to non-binding germ cells from testes of 19 day old neonates. Laminin binding germ cells are enriched in spermatogonial stem cells. Results provide insight into molecular events underlying stem cell activity.", "type": "Expression profiling by array", "pubmed_id": "15110708", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE829", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS704", "description": "interstitial", "sample_id": [ "GSM9912" ], "type": "cell type", "id": "GDS704_1" }, { "dataset_id": "GDS704", "description": "tubular", "sample_id": [ "GSM9915", "GSM12792" ], "type": "cell type", "id": "GDS704_2" }, { "dataset_id": "GDS704", "description": "laminin non-binding", "sample_id": [ "GSM12786", "GSM12789" ], "type": "cell type", "id": "GDS704_3" }, { "dataset_id": "GDS704", "description": "laminin binding", "sample_id": [ "GSM12780", "GSM12783" ], "type": "cell type", "id": "GDS704_4" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS704", "version": 1.0, "instances": "7", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS704.tab", "compression": "gz" } ], [ [ "GDS705.tab" ], { "title": "RENT1 nonsense-mediated mRNA decay component knockdown", "description": "Analysis of mRNA abundance changes in Hela cells following knockdown of nonsense-mediated mRNA decay component RENT1 using RNAi. Results identify transcripts potentially regulated by RENT1.", "type": "Expression profiling by array", "pubmed_id": "15448691", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1703", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS705", "description": "control", "sample_id": [ "GSM29530", "GSM29531" ], "type": "protocol", "id": "GDS705_1" }, { "dataset_id": "GDS705", "description": "RENT1 knockdown", "sample_id": [ "GSM29532", "GSM29534" ], "type": "protocol", "id": "GDS705_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS705", "version": 1.0, "instances": "4", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS705.tab", "compression": "gz" } ], [ [ "GDS707.tab" ], { "title": "Aging brain: frontal cortex expression profiles at various ages", "description": "Analysis of gene expression profiles obtained from the postmortem frontal cortex of 18 normal males and 12 normal females at 26 to 106 years of age. Results provide insight into molecular events underlying the onset of brain aging.", "type": "Expression profiling by array", "pubmed_id": "15190254", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1572", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS707", "description": "male", "sample_id": [ "GSM27015", "GSM27016", "GSM27018", "GSM27021", "GSM27023", "GSM27024", "GSM27025", "GSM27027", "GSM27028", "GSM27031", "GSM27032", "GSM27034", "GSM27035", "GSM27036", "GSM27038", "GSM27040", "GSM27042", "GSM27043" ], "type": "gender", "id": "GDS707_1" }, { "dataset_id": "GDS707", "description": "female", "sample_id": [ "GSM27017", "GSM27019", "GSM27020", "GSM27022", "GSM27026", "GSM27029", "GSM27030", "GSM27033", "GSM27037", "GSM27039", "GSM27041", "GSM27044" ], "type": "gender", "id": "GDS707_2" }, { "dataset_id": "GDS707", "description": "20 - 39 y", "sample_id": [ "GSM27015", "GSM27016", "GSM27017", "GSM27018", "GSM27019", "GSM27020", "GSM27021", "GSM27022" ], "type": "age", "id": "GDS707_3" }, { "dataset_id": "GDS707", "description": "40 - 59 y", "sample_id": [ "GSM27023", "GSM27024", "GSM27025", "GSM27026", "GSM27027", "GSM27028", "GSM27029" ], "type": "age", "id": "GDS707_4" }, { "dataset_id": "GDS707", "description": "60 - 79 y", "sample_id": [ "GSM27030", "GSM27031", "GSM27032", "GSM27033", "GSM27034", "GSM27035" ], "type": "age", "id": "GDS707_5" }, { "dataset_id": "GDS707", "description": "80 - 99 y", "sample_id": [ "GSM27036", "GSM27037", "GSM27038", "GSM27039", "GSM27040", "GSM27041", "GSM27042", "GSM27043" ], "type": "age", "id": "GDS707_6" }, { "dataset_id": "GDS707", "description": "106 y", "sample_id": [ "GSM27044" ], "type": "age", "id": "GDS707_7" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS707", "version": 1.0, "instances": "30", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS707.tab", "compression": "gz" } ], [ [ "GDS708.tab" ], { "title": "HIV integration sites and gene transcription activity", "description": "Correlation of HIV integration sites to gene activity in SupT1 (T cell), PBMC (peripheral blood mononuclear cell), and IMR90 (lung fibroblast) cell lines infected with an HIV-based vector. Results provide insight into sites preferred in HIV integration.", "type": "Expression profiling by array", "pubmed_id": "15314653", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE1407", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS708", "description": "T cell", "sample_id": [ "GSM23219", "GSM23220" ], "type": "cell type", "id": "GDS708_1" }, { "dataset_id": "GDS708", "description": "mononuclear", "sample_id": [ "GSM23221", "GSM23222", "GSM23223" ], "type": "cell type", "id": "GDS708_2" }, { "dataset_id": "GDS708", "description": "fibroblast", "sample_id": [ "GSM23224", "GSM23225" ], "type": "cell type", "id": "GDS708_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS708", "version": 1.0, "instances": "7", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS708.tab", "compression": "gz" } ], [ [ "GDS709.tab" ], { "title": "Enterocyte differentiation time course", "description": "Enterocyte differentiation analyzed using colonic adenocarcinoma cell line Caco-2 BBe as a model. Cells examined at 2, 8, and 15 days in culture: these are in the proliferating, postproliferative nondifferentiated, and differentiated stages respectively.", "type": "Expression profiling by array", "pubmed_id": "12644633", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1614", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS709", "description": "2 d", "sample_id": [ "GSM27517", "GSM27535", "GSM27539", "GSM27542" ], "type": "time", "id": "GDS709_1" }, { "dataset_id": "GDS709", "description": "8 d", "sample_id": [ "GSM27544", "GSM27545", "GSM27547", "GSM27550" ], "type": "time", "id": "GDS709_2" }, { "dataset_id": "GDS709", "description": "15 d", "sample_id": [ "GSM27551", "GSM27552", "GSM27553", "GSM27554" ], "type": "time", "id": "GDS709_3" }, { "dataset_id": "GDS709", "description": "proliferating", "sample_id": [ "GSM27517", "GSM27535", "GSM27539", "GSM27542" ], "type": "development stage", "id": "GDS709_4" }, { "dataset_id": "GDS709", "description": "post-proliferative", "sample_id": [ "GSM27544", "GSM27545", "GSM27547", "GSM27550" ], "type": "development stage", "id": "GDS709_5" }, { "dataset_id": "GDS709", "description": "differentiated", "sample_id": [ "GSM27551", "GSM27552", "GSM27553", "GSM27554" ], "type": "development stage", "id": "GDS709_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS709", "version": 1.0, "instances": "12", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS709.tab", "compression": "gz" } ], [ [ "GDS710.tab" ], { "title": "Hippocampus ischemic tolerance time course", "description": "Comparison of temporal expression patterns in hippocampi of hypoxia tolerant and sensitive animals. Microdissected hippocampus CA1 regions analyzed 0, 1, 3, 12, 24, and 48 hours after ischemia operation. Results offer insight into cell death in hypoxia.", "type": "Expression profiling by array", "pubmed_id": "15713787", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1357", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS710", "description": "hypoxia sensitive", "sample_id": [ "GSM21936", "GSM21937", "GSM21938", "GSM21939", "GSM21940", "GSM21941", "GSM21942", "GSM21943", "GSM21944", "GSM21945", "GSM21946", "GSM21947" ], "type": "protocol", "id": "GDS710_1" }, { "dataset_id": "GDS710", "description": "hypoxia tolerant", "sample_id": [ "GSM21948", "GSM21949", "GSM21950", "GSM21951", "GSM21952", "GSM21953", "GSM21954", "GSM21955", "GSM21956", "GSM21957", "GSM21958", "GSM21959" ], "type": "protocol", "id": "GDS710_2" }, { "dataset_id": "GDS710", "description": "0 h", "sample_id": [ "GSM21936", "GSM21937", "GSM21948", "GSM21949" ], "type": "time", "id": "GDS710_3" }, { "dataset_id": "GDS710", "description": "1 h", "sample_id": [ "GSM21938", "GSM21939", "GSM21950", "GSM21951" ], "type": "time", "id": "GDS710_4" }, { "dataset_id": "GDS710", "description": "3 h", "sample_id": [ "GSM21940", "GSM21941", "GSM21952", "GSM21953" ], "type": "time", "id": "GDS710_5" }, { "dataset_id": "GDS710", "description": "12 h", "sample_id": [ "GSM21942", "GSM21943", "GSM21954", "GSM21955" ], "type": "time", "id": "GDS710_6" }, { "dataset_id": "GDS710", "description": "24 h", "sample_id": [ "GSM21944", "GSM21945", "GSM21956", "GSM21957" ], "type": "time", "id": "GDS710_7" }, { "dataset_id": "GDS710", "description": "48 h", "sample_id": [ "GSM21946", "GSM21947", "GSM21958", "GSM21959" ], "type": "time", "id": "GDS710_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS710", "version": 1.0, "instances": "24", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS710.tab", "compression": "gz" } ], [ [ "GDS711.tab" ], { "title": "Juvenile rheumatoid arthritis expression profiles in mononuclear cells", "description": "Examination of peripheral blood and synovial fluid mononuclear cells in pauciarticular and polyarticular rheumatoid arthritis, and in juvenile spondyloarthropathy. Results identify disease subtypes and provide insight into disease mechanisms.", "type": "Expression profiling by array", "pubmed_id": "15150433", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "57", "value_type": "transformed count", "reference_series": "GSE1402", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS711", "description": "peripheral blood mononuclear", "sample_id": [ "GSM23159", "GSM23160", "GSM23161", "GSM23162", "GSM23163", "GSM23164", "GSM23165", "GSM23166", "GSM23167", "GSM23168", "GSM23169", "GSM23170", "GSM23171", "GSM23172", "GSM23173", "GSM23174", "GSM23175", "GSM23176", "GSM23177", "GSM23178", "GSM23179", "GSM23180", "GSM23181", "GSM23182", "GSM23183", "GSM23184", "GSM23185", "GSM23186", "GSM23187", "GSM23188", "GSM23189", "GSM23190", "GSM23191", "GSM23192", "GSM23193", "GSM23194", "GSM23195" ], "type": "cell type", "id": "GDS711_1" }, { "dataset_id": "GDS711", "description": "synovial fluid mononuclear", "sample_id": [ "GSM23196", "GSM23197", "GSM23198", "GSM23199", "GSM23200", "GSM23201", "GSM23202", "GSM23203", "GSM23204", "GSM23205", "GSM23206", "GSM23207", "GSM23208", "GSM23209", "GSM23210", "GSM23211", "GSM23212", "GSM23213", "GSM23214", "GSM23215" ], "type": "cell type", "id": "GDS711_2" }, { "dataset_id": "GDS711", "description": "normal", "sample_id": [ "GSM23185", "GSM23186", "GSM23187", "GSM23188", "GSM23189", "GSM23190", "GSM23191", "GSM23192", "GSM23193", "GSM23194", "GSM23195" ], "type": "disease state", "id": "GDS711_3" }, { "dataset_id": "GDS711", "description": "pauciarticular rheumatoid arthritis", "sample_id": [ "GSM23159", "GSM23160", "GSM23161", "GSM23162", "GSM23163", "GSM23196", "GSM23197", "GSM23198", "GSM23199", "GSM23200" ], "type": "disease state", "id": "GDS711_4" }, { "dataset_id": "GDS711", "description": "polyarticular rheumatoid arthritis", "sample_id": [ "GSM23164", "GSM23165", "GSM23166", "GSM23167", "GSM23168", "GSM23169", "GSM23170", "GSM23171", "GSM23172", "GSM23173", "GSM23174", "GSM23175", "GSM23176", "GSM23177", "GSM23178", "GSM23201", "GSM23202", "GSM23203", "GSM23204", "GSM23205", "GSM23206", "GSM23207", "GSM23208", "GSM23209", "GSM23210" ], "type": "disease state", "id": "GDS711_5" }, { "dataset_id": "GDS711", "description": "spondyloarthropathy", "sample_id": [ "GSM23179", "GSM23180", "GSM23181", "GSM23182", "GSM23183", "GSM23184", "GSM23211", "GSM23212", "GSM23213", "GSM23214", "GSM23215" ], "type": "disease state", "id": "GDS711_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS711", "version": 1.0, "instances": "57", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS711.tab", "compression": "gz" } ], [ [ "GDS717.tab" ], { "title": "Huntingtons disease and combination drug therapy", "description": "Whole brain hemispheres from Huntingtons disease model R6/2 transgenic mice treated with creatine, tacrine and moclobemide from 5 weeks of age. Drug therapy was aimed at boosting neurotransmitter levels and improve cognitive functions.", "type": "Expression profiling by array", "pubmed_id": "15787692", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "13", "value_type": "count", "reference_series": "GSE857", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS717", "description": "wild type", "sample_id": [ "GSM13300", "GSM13355", "GSM13356", "GSM13357", "GSM13358", "GSM13359" ], "type": "strain", "id": "GDS717_1" }, { "dataset_id": "GDS717", "description": "R6/2", "sample_id": [ "GSM13360", "GSM13361", "GSM13362", "GSM13363", "GSM13364", "GSM13365", "GSM13366" ], "type": "strain", "id": "GDS717_2" }, { "dataset_id": "GDS717", "description": "control", "sample_id": [ "GSM13300", "GSM13355", "GSM13356", "GSM13360", "GSM13361", "GSM13362", "GSM13363" ], "type": "agent", "id": "GDS717_3" }, { "dataset_id": "GDS717", "description": "creatine, tacrine, moclobemide", "sample_id": [ "GSM13357", "GSM13358", "GSM13359", "GSM13364", "GSM13365", "GSM13366" ], "type": "agent", "id": "GDS717_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS717", "version": 1.0, "instances": "13", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS717.tab", "compression": "gz" } ], [ [ "GDS719.tab" ], { "title": "Prostate adenocarcinoma response to radiation (HG-U95A)", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following ionizing radiation (IR) to a dose of 10 Sv. Cells harvested 6 or 24 hours after IR. Dose applied in 1 or 4 fractions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE762", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS719", "description": "LNCaP", "sample_id": [ "GSM11873" ], "type": "cell line", "id": "GDS719_1" }, { "dataset_id": "GDS719", "description": "LNCaP C4-2", "sample_id": [ "GSM11421", "GSM11747", "GSM11790", "GSM11829" ], "type": "cell line", "id": "GDS719_2" }, { "dataset_id": "GDS719", "description": "control", "sample_id": [ "GSM11421", "GSM11873" ], "type": "dose", "id": "GDS719_3" }, { "dataset_id": "GDS719", "description": "1 x 10 Sv", "sample_id": [ "GSM11747", "GSM11790" ], "type": "dose", "id": "GDS719_4" }, { "dataset_id": "GDS719", "description": "4 x 2.5 Sv", "sample_id": [ "GSM11829" ], "type": "dose", "id": "GDS719_5" }, { "dataset_id": "GDS719", "description": "0 h", "sample_id": [ "GSM11421", "GSM11873" ], "type": "time", "id": "GDS719_6" }, { "dataset_id": "GDS719", "description": "6 h", "sample_id": [ "GSM11747", "GSM11829" ], "type": "time", "id": "GDS719_7" }, { "dataset_id": "GDS719", "description": "24 h", "sample_id": [ "GSM11790" ], "type": "time", "id": "GDS719_8" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS719", "version": 1.0, "instances": "5", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS719.tab", "compression": "gz" } ], [ [ "GDS720.tab" ], { "title": "Prostate adenocarcinoma response to radiation (HG-U95B)", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following ionizing radiation (IR) to a dose of 10 Sv. Cells harvested 6 or 24 hours after IR. Dose applied in 1 or 4 fractions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL92", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12620", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE762", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS720", "description": "LNCaP", "sample_id": [ "GSM11878" ], "type": "cell line", "id": "GDS720_1" }, { "dataset_id": "GDS720", "description": "LNCAP C4-2", "sample_id": [ "GSM11742", "GSM11748", "GSM11791", "GSM11848" ], "type": "cell line", "id": "GDS720_2" }, { "dataset_id": "GDS720", "description": "control", "sample_id": [ "GSM11742", "GSM11878" ], "type": "dose", "id": "GDS720_3" }, { "dataset_id": "GDS720", "description": "1 x 10 Sv", "sample_id": [ "GSM11748", "GSM11791" ], "type": "dose", "id": "GDS720_4" }, { "dataset_id": "GDS720", "description": "4 x 2.5 Sv", "sample_id": [ "GSM11848" ], "type": "dose", "id": "GDS720_5" }, { "dataset_id": "GDS720", "description": "0 h", "sample_id": [ "GSM11742", "GSM11878" ], "type": "time", "id": "GDS720_6" }, { "dataset_id": "GDS720", "description": "6 h", "sample_id": [ "GSM11748", "GSM11848" ], "type": "time", "id": "GDS720_7" }, { "dataset_id": "GDS720", "description": "24 h", "sample_id": [ "GSM11791" ], "type": "time", "id": "GDS720_8" } ], "taxid": "9606", "genes": 10309, "aggregation_function": "mean", "name": "GDS720", "version": 1.0, "instances": "5", "variables": 10313, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS720.tab", "compression": "gz" } ], [ [ "GDS721.tab" ], { "title": "Prostate adenocarcinoma response to radiation (HG-U95C)", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following ionizing radiation (IR) to a dose of 10 Sv. Cells harvested 6 or 24 hours after IR. Dose applied in 1 or 4 fractions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL93", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12646", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE762", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS721", "description": "LNCAP", "sample_id": [ "GSM11879" ], "type": "cell line", "id": "GDS721_1" }, { "dataset_id": "GDS721", "description": "LNCaP C4-2", "sample_id": [ "GSM11743", "GSM11749", "GSM11795", "GSM11855" ], "type": "cell line", "id": "GDS721_2" }, { "dataset_id": "GDS721", "description": "control", "sample_id": [ "GSM11743", "GSM11879" ], "type": "dose", "id": "GDS721_3" }, { "dataset_id": "GDS721", "description": "1 x 10 Sv", "sample_id": [ "GSM11749", "GSM11795" ], "type": "dose", "id": "GDS721_4" }, { "dataset_id": "GDS721", "description": "4 x 2.5 Sv", "sample_id": [ "GSM11855" ], "type": "dose", "id": "GDS721_5" }, { "dataset_id": "GDS721", "description": "0 h", "sample_id": [ "GSM11743", "GSM11879" ], "type": "time", "id": "GDS721_6" }, { "dataset_id": "GDS721", "description": "6 h", "sample_id": [ "GSM11749", "GSM11855" ], "type": "time", "id": "GDS721_7" }, { "dataset_id": "GDS721", "description": "24 h", "sample_id": [ "GSM11795" ], "type": "time", "id": "GDS721_8" } ], "taxid": "9606", "genes": 10622, "aggregation_function": "mean", "name": "GDS721", "version": 1.0, "instances": "5", "variables": 10626, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS721.tab", "compression": "gz" } ], [ [ "GDS722.tab" ], { "title": "Prostate adenocarcinoma response to radiation (HG-U95D)", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following ionizing radiation (IR) to a dose of 10 Sv. Cells harvested 6 or 24 hours after IR. Dose applied in 1 or 4 fractions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL94", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12644", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE762", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS722", "description": "LNCaP", "sample_id": [ "GSM11880" ], "type": "cell line", "id": "GDS722_1" }, { "dataset_id": "GDS722", "description": "LNCaP C4-2", "sample_id": [ "GSM11744", "GSM11750", "GSM11799", "GSM11856" ], "type": "cell line", "id": "GDS722_2" }, { "dataset_id": "GDS722", "description": "control", "sample_id": [ "GSM11744", "GSM11880" ], "type": "dose", "id": "GDS722_3" }, { "dataset_id": "GDS722", "description": "1 x 10 Sv", "sample_id": [ "GSM11750", "GSM11799" ], "type": "dose", "id": "GDS722_4" }, { "dataset_id": "GDS722", "description": "4 x 2.5 Sv", "sample_id": [ "GSM11856" ], "type": "dose", "id": "GDS722_5" }, { "dataset_id": "GDS722", "description": "0 h", "sample_id": [ "GSM11744", "GSM11880" ], "type": "time", "id": "GDS722_6" }, { "dataset_id": "GDS722", "description": "6 h", "sample_id": [ "GSM11750", "GSM11856" ], "type": "time", "id": "GDS722_7" }, { "dataset_id": "GDS722", "description": "24 h", "sample_id": [ "GSM11799" ], "type": "time", "id": "GDS722_8" } ], "taxid": "9606", "genes": 11408, "aggregation_function": "mean", "name": "GDS722", "version": 1.0, "instances": "5", "variables": 11412, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS722.tab", "compression": "gz" } ], [ [ "GDS723.tab" ], { "title": "Prostate adenocarcinoma response to radiation (HG-U95E)", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following ionizing radiation (IR) to a dose of 10 Sv. Cells harvested 6 or 24 hours after IR. Dose applied in 1 or 4 fractions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL95", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12639", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE762", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS723", "description": "LNCaP", "sample_id": [ "GSM11881" ], "type": "cell line", "id": "GDS723_1" }, { "dataset_id": "GDS723", "description": "LNCaP C4-2", "sample_id": [ "GSM11745", "GSM11751", "GSM11816", "GSM11859" ], "type": "cell line", "id": "GDS723_2" }, { "dataset_id": "GDS723", "description": "control", "sample_id": [ "GSM11745", "GSM11881" ], "type": "dose", "id": "GDS723_3" }, { "dataset_id": "GDS723", "description": "1 x 10 Sv", "sample_id": [ "GSM11751", "GSM11816" ], "type": "dose", "id": "GDS723_4" }, { "dataset_id": "GDS723", "description": "4 x 2.5 Sv", "sample_id": [ "GSM11859" ], "type": "dose", "id": "GDS723_5" }, { "dataset_id": "GDS723", "description": "0 h", "sample_id": [ "GSM11745", "GSM11881" ], "type": "time", "id": "GDS723_6" }, { "dataset_id": "GDS723", "description": "6 h", "sample_id": [ "GSM11751", "GSM11859" ], "type": "time", "id": "GDS723_7" }, { "dataset_id": "GDS723", "description": "24 h", "sample_id": [ "GSM11816" ], "type": "time", "id": "GDS723_8" } ], "taxid": "9606", "genes": 10350, "aggregation_function": "mean", "name": "GDS723", "version": 1.0, "instances": "5", "variables": 10354, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS723.tab", "compression": "gz" } ], [ [ "GDS724.tab" ], { "title": "Kidney transplant rejection expression profiling", "description": "Analysis of kidney transplant rejection by expression profiling of kidney biopsies and peripheral blood lymphocytes from patients. Results identify expression profiles unique to rejection, dysfunction without rejection, and well-functioning transplants.", "type": "Expression profiling by array", "pubmed_id": "15307835", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "62", "value_type": "count", "reference_series": "GSE1563", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS724", "description": "peripheral blood lymphocyte", "sample_id": [ "GSM26805", "GSM26806", "GSM26807", "GSM26808", "GSM26809", "GSM26810", "GSM26811", "GSM26812", "GSM26813", "GSM26814", "GSM26815", "GSM26816", "GSM26817", "GSM26818", "GSM26819", "GSM26820", "GSM26821", "GSM26822", "GSM26823", "GSM26824", "GSM26825", "GSM26826", "GSM26827", "GSM26828", "GSM26829", "GSM26830", "GSM26831", "GSM26832", "GSM26833", "GSM26834", "GSM26835" ], "type": "tissue", "id": "GDS724_1" }, { "dataset_id": "GDS724", "description": "kidney", "sample_id": [ "GSM26836", "GSM26837", "GSM26838", "GSM26839", "GSM26840", "GSM26841", "GSM26842", "GSM26843", "GSM26844", "GSM26845", "GSM26846", "GSM26847", "GSM26848", "GSM26849", "GSM26850", "GSM26851", "GSM26852", "GSM26853", "GSM26854", "GSM26855", "GSM26856", "GSM26857", "GSM26858", "GSM26859", "GSM26860", "GSM26861", "GSM26862", "GSM26863", "GSM26864", "GSM26865", "GSM26866" ], "type": "tissue", "id": "GDS724_2" }, { "dataset_id": "GDS724", "description": "normal donor", "sample_id": [ "GSM26805", "GSM26806", "GSM26807", "GSM26808", "GSM26809", "GSM26810", "GSM26811", "GSM26812", "GSM26836", "GSM26837", "GSM26838", "GSM26839", "GSM26840", "GSM26841", "GSM26842", "GSM26843", "GSM26844" ], "type": "individual", "id": "GDS724_3" }, { "dataset_id": "GDS724", "description": "acute rejection", "sample_id": [ "GSM26813", "GSM26814", "GSM26815", "GSM26816", "GSM26817", "GSM26818", "GSM26845", "GSM26846", "GSM26847", "GSM26848", "GSM26849", "GSM26850", "GSM26851" ], "type": "individual", "id": "GDS724_4" }, { "dataset_id": "GDS724", "description": "well-functioning transplant", "sample_id": [ "GSM26819", "GSM26820", "GSM26821", "GSM26822", "GSM26823", "GSM26824", "GSM26825", "GSM26826", "GSM26827", "GSM26852", "GSM26853", "GSM26854", "GSM26855", "GSM26856", "GSM26857", "GSM26858", "GSM26859", "GSM26860", "GSM26861" ], "type": "individual", "id": "GDS724_5" }, { "dataset_id": "GDS724", "description": "renal dysfunction w/o rejection", "sample_id": [ "GSM26828", "GSM26829", "GSM26830", "GSM26831", "GSM26832", "GSM26833", "GSM26834", "GSM26835", "GSM26862", "GSM26863", "GSM26864", "GSM26865", "GSM26866" ], "type": "individual", "id": "GDS724_6" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS724", "version": 1.0, "instances": "62", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS724.tab", "compression": "gz" } ], [ [ "GDS725.tab" ], { "title": "Prostate adenocarcinoma and ionizing radiation", "description": "Time course of androgen-independent LNCaP C4-2 prostate adenocarcinoma cells following a dose of 10 Sv ionizing radiation (IR). Cells harvested at several time points up to 24 hours after IR.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE770", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS725", "description": "0 h", "sample_id": [ "GSM12087" ], "type": "time", "id": "GDS725_1" }, { "dataset_id": "GDS725", "description": "1 h", "sample_id": [ "GSM12094" ], "type": "time", "id": "GDS725_2" }, { "dataset_id": "GDS725", "description": "2 h", "sample_id": [ "GSM12183" ], "type": "time", "id": "GDS725_3" }, { "dataset_id": "GDS725", "description": "4 h", "sample_id": [ "GSM12184" ], "type": "time", "id": "GDS725_4" }, { "dataset_id": "GDS725", "description": "6 h", "sample_id": [ "GSM12185" ], "type": "time", "id": "GDS725_5" }, { "dataset_id": "GDS725", "description": "8 h", "sample_id": [ "GSM12186" ], "type": "time", "id": "GDS725_6" }, { "dataset_id": "GDS725", "description": "12 h", "sample_id": [ "GSM12187" ], "type": "time", "id": "GDS725_7" }, { "dataset_id": "GDS725", "description": "16 h", "sample_id": [ "GSM12188" ], "type": "time", "id": "GDS725_8" }, { "dataset_id": "GDS725", "description": "20 h", "sample_id": [ "GSM12189" ], "type": "time", "id": "GDS725_9" }, { "dataset_id": "GDS725", "description": "24 h", "sample_id": [ "GSM12190" ], "type": "time", "id": "GDS725_10" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS725", "version": 1.0, "instances": "10", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS725.tab", "compression": "gz" } ], [ [ "GDS726.tab" ], { "title": "Renin-angiotensin system inhibition effect on cerebral capillaries", "description": "Examination of cerebral capillaries in stroke-prone spontaneously hypertensives (SHRSP) treated with either an angiotensin II receptor (AT1R) antagonist or an angiotensin converting enzyme (ACE) inhibitor. Renin-angiotensin system inhibition reduces stroke in SHRSP.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1548", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS726", "description": "control", "sample_id": [ "GSM26644", "GSM26645" ], "type": "agent", "id": "GDS726_1" }, { "dataset_id": "GDS726", "description": "lisinopril (ACE)", "sample_id": [ "GSM26646", "GSM26647" ], "type": "agent", "id": "GDS726_2" }, { "dataset_id": "GDS726", "description": "olmesartan (AT1R)", "sample_id": [ "GSM26648", "GSM26649" ], "type": "agent", "id": "GDS726_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS726", "version": 1.0, "instances": "6", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS726.tab", "compression": "gz" } ], [ [ "GDS728.tab" ], { "title": "CD8 T cell development (Mu11K-A)", "description": "Expression profiling of na\u00efve and memory CD8 T cells from female RAG1-deficient transgenics expressing B6.2.16 T cell receptors specific for the human Y antigen. Genes protecting against programmed cell death upregulated in memory CD8 T cells.", "type": "Expression profiling by array", "pubmed_id": "15311278", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1578", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS728", "description": "memory", "sample_id": [ "GSM27136" ], "type": "development stage", "id": "GDS728_1" }, { "dataset_id": "GDS728", "description": "naive", "sample_id": [ "GSM27773" ], "type": "development stage", "id": "GDS728_2" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS728", "version": 1.0, "instances": "2", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS728.tab", "compression": "gz" } ], [ [ "GDS731.tab" ], { "title": "Leukotriene LTD4 effect on macrophage and endothelial cells", "description": "Examination of gene expression in MonoMac6 macrophage and umbilical vein endothelial cells treated with 100 nM leukotriene LTD4 for 1 hour. Results offer insight into autocrine action of LTD4 on macrophages and its paracrine action on endothelial cells.", "type": "Expression profiling by array", "pubmed_id": "15322539", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1644", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS731", "description": "umbilical vein endothelial", "sample_id": [ "GSM27929", "GSM27930" ], "type": "cell type", "id": "GDS731_1" }, { "dataset_id": "GDS731", "description": "macrophage", "sample_id": [ "GSM27931", "GSM27932" ], "type": "cell type", "id": "GDS731_2" }, { "dataset_id": "GDS731", "description": "control", "sample_id": [ "GSM27929", "GSM27931" ], "type": "agent", "id": "GDS731_3" }, { "dataset_id": "GDS731", "description": "leukotriene LTD4", "sample_id": [ "GSM27930", "GSM27932" ], "type": "agent", "id": "GDS731_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS731", "version": 1.0, "instances": "4", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS731.tab", "compression": "gz" } ], [ [ "GDS732.tab" ], { "title": "Malpighian tubule expression profiling", "description": "Expression profiling of 7 day adult Oregon R Malpighian tubules in reference to whole organisms. Results provide insight into molecular mechanisms underlying renal function.", "type": "Expression profiling by array", "pubmed_id": "15345053", "platform": "GPL72", "platform_organism": "Drosophila melanogaster", "platform_technology_type": "in situ oligonucleotide", "feature_count": "14010", "sample_organism": "Drosophila melanogaster", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1690", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS732", "description": "Malpighian tubule", "sample_id": [ "GSM29173", "GSM29174", "GSM29175", "GSM29176", "GSM29177" ], "type": "tissue", "id": "GDS732_1" }, { "dataset_id": "GDS732", "description": "whole organism", "sample_id": [ "GSM29178", "GSM29179", "GSM29180", "GSM29181", "GSM29182" ], "type": "tissue", "id": "GDS732_2" } ], "taxid": "7227", "genes": 12127, "aggregation_function": "mean", "name": "GDS732", "version": 1.0, "instances": "10", "variables": 12129, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS732.tab", "compression": "gz" } ], [ [ "GDS734.tab" ], { "title": "Thiazolidinedione treatment of 3T3-L1 adipocytes", "description": "Expression profiling of 3T3-L1 adipocytes treated with the thiazolidinediones (TZD) pioglitazone, rosiglitazone, and troglitazone, at 20 uM, 1 uM, and 20 uM respectively. TZDs increase sensitivity of cells to insulin in patients with type II diabetes.", "type": "Expression profiling by array", "pubmed_id": "15217816", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE1458", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS734", "description": "control", "sample_id": [ "GSM24459", "GSM24460", "GSM24461" ], "type": "agent", "id": "GDS734_1" }, { "dataset_id": "GDS734", "description": "20 uM pioglitazone", "sample_id": [ "GSM24462", "GSM24463" ], "type": "agent", "id": "GDS734_2" }, { "dataset_id": "GDS734", "description": "1 uM rosiglitazone", "sample_id": [ "GSM24464", "GSM24465", "GSM24466" ], "type": "agent", "id": "GDS734_3" }, { "dataset_id": "GDS734", "description": "20 uM troglitazone", "sample_id": [ "GSM24467", "GSM24468", "GSM24469" ], "type": "agent", "id": "GDS734_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS734", "version": 1.0, "instances": "11", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS734.tab", "compression": "gz" } ], [ [ "GDS735.tab" ], { "title": "High fat diet effect on aorta: time course", "description": "Comparison of gene expression in aortas of C57BL/6 and C3H/HeJ fed identical high fat diets at 0, 4, 8, 24, and 40 weeks. C57BL/6 has a greater tendency than C3H/HeJ to develop atherosclerotic aortic lesions when both fed identical high fat diets.", "type": "Expression profiling by array", "pubmed_id": [ "15550693", "15870398" ], "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "54", "value_type": "log ratio", "reference_series": "GSE1560", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS735", "description": "normal diet", "sample_id": [ "GSM26750", "GSM26751", "GSM26752", "GSM26753", "GSM26754", "GSM26755", "GSM26756", "GSM26757", "GSM26758", "GSM26759", "GSM26760", "GSM26761", "GSM26762", "GSM26763", "GSM26764", "GSM26781", "GSM26782", "GSM26783", "GSM26784", "GSM26785", "GSM26786", "GSM26787", "GSM26788", "GSM26789", "GSM26790", "GSM26795", "GSM26796", "GSM26797", "GSM26798", "GSM26799" ], "type": "growth protocol", "id": "GDS735_1" }, { "dataset_id": "GDS735", "description": "high fat diet", "sample_id": [ "GSM26765", "GSM26766", "GSM26767", "GSM26768", "GSM26769", "GSM26770", "GSM26771", "GSM26772", "GSM26773", "GSM26774", "GSM26775", "GSM26776", "GSM26777", "GSM26778", "GSM26779", "GSM26780", "GSM26791", "GSM26792", "GSM26793", "GSM26794", "GSM26800", "GSM26801", "GSM26802", "GSM26803" ], "type": "growth protocol", "id": "GDS735_2" }, { "dataset_id": "GDS735", "description": "C3H/HeJ", "sample_id": [ "GSM26750", "GSM26756", "GSM26762", "GSM26763", "GSM26764", "GSM26765", "GSM26766", "GSM26767", "GSM26768", "GSM26774", "GSM26775", "GSM26776", "GSM26777", "GSM26781", "GSM26782", "GSM26783", "GSM26784", "GSM26785", "GSM26791", "GSM26792", "GSM26793", "GSM26794", "GSM26795", "GSM26796", "GSM26797", "GSM26798", "GSM26799" ], "type": "strain", "id": "GDS735_3" }, { "dataset_id": "GDS735", "description": "C57BL/6", "sample_id": [ "GSM26751", "GSM26752", "GSM26753", "GSM26754", "GSM26755", "GSM26757", "GSM26758", "GSM26759", "GSM26760", "GSM26761", "GSM26769", "GSM26770", "GSM26771", "GSM26772", "GSM26773", "GSM26778", "GSM26779", "GSM26780", "GSM26786", "GSM26787", "GSM26788", "GSM26789", "GSM26790", "GSM26800", "GSM26801", "GSM26802", "GSM26803" ], "type": "strain", "id": "GDS735_4" }, { "dataset_id": "GDS735", "description": "0 wk", "sample_id": [ "GSM26750", "GSM26751", "GSM26757", "GSM26781", "GSM26786", "GSM26795" ], "type": "time", "id": "GDS735_5" }, { "dataset_id": "GDS735", "description": "4 wk", "sample_id": [ "GSM26752", "GSM26756", "GSM26758", "GSM26765", "GSM26769", "GSM26773", "GSM26774", "GSM26782", "GSM26787", "GSM26791", "GSM26796", "GSM26800" ], "type": "time", "id": "GDS735_6" }, { "dataset_id": "GDS735", "description": "8 wk", "sample_id": [ "GSM26753", "GSM26759", "GSM26762", "GSM26766", "GSM26770", "GSM26775", "GSM26778", "GSM26783", "GSM26788", "GSM26792", "GSM26797", "GSM26801" ], "type": "time", "id": "GDS735_7" }, { "dataset_id": "GDS735", "description": "24 wk", "sample_id": [ "GSM26754", "GSM26760", "GSM26763", "GSM26767", "GSM26771", "GSM26776", "GSM26779", "GSM26784", "GSM26789", "GSM26793", "GSM26798", "GSM26802" ], "type": "time", "id": "GDS735_8" }, { "dataset_id": "GDS735", "description": "40 wk", "sample_id": [ "GSM26755", "GSM26761", "GSM26764", "GSM26768", "GSM26772", "GSM26777", "GSM26780", "GSM26785", "GSM26790", "GSM26794", "GSM26799", "GSM26803" ], "type": "time", "id": "GDS735_9" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS735", "version": 1.0, "instances": "54", "variables": 19522, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS735.tab", "compression": "gz" } ], [ [ "GDS737.tab" ], { "title": "Lung tissue from smokers with severe emphysema", "description": "Comparison of lung tissue from smokers with severe emphysema (removed at lung volume reduction surgery) and smokers with mild or no emphysema. Study provides insights into the pathogenesis of chronic obstructive pulmonary disease (COPD).", "type": "Expression profiling by array", "pubmed_id": "15374838", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1650", "order": "none", "update_date": "Apr 05 2013", "subsets": [ { "dataset_id": "GDS737", "description": "no or mild emphysema", "sample_id": [ "GSM28358", "GSM28360", "GSM28362", "GSM28370", "GSM28372", "GSM28374", "GSM28376", "GSM28378", "GSM28380", "GSM28382", "GSM28384", "GSM28386" ], "type": "disease state", "id": "GDS737_1" }, { "dataset_id": "GDS737", "description": "severe emphysema", "sample_id": [ "GSM28357", "GSM28359", "GSM28361", "GSM28363", "GSM28364", "GSM28365", "GSM28366", "GSM28367", "GSM28368", "GSM28369", "GSM28371", "GSM28373", "GSM28375", "GSM28377", "GSM28379", "GSM28381", "GSM28383", "GSM28385" ], "type": "disease state", "id": "GDS737_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS737", "version": 1.0, "instances": "30", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS737.tab", "compression": "gz" } ], [ [ "GDS738.tab" ], { "title": "Intervertebral disc cells and osmotic loading", "description": "Gene expression profiles of intervertebral disc cells (IVD) exposed to iso-osmotic, hyper-osmotic and hypo-osmotic conditions. Under physiological conditions, IVD are subject to osmotic stress.", "type": "Expression profiling by array", "pubmed_id": "16133915", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE1648", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS738", "description": "hyper-osmotic", "sample_id": [ "GSM27955", "GSM27962", "GSM27966", "GSM27972" ], "type": "protocol", "id": "GDS738_1" }, { "dataset_id": "GDS738", "description": "iso-osmotic", "sample_id": [ "GSM27960", "GSM27965", "GSM27970", "GSM27976" ], "type": "protocol", "id": "GDS738_2" }, { "dataset_id": "GDS738", "description": "hypo-osmotic", "sample_id": [ "GSM27957", "GSM27968", "GSM27974" ], "type": "protocol", "id": "GDS738_3" }, { "dataset_id": "GDS738", "description": "63 year old", "sample_id": [ "GSM27955", "GSM27957", "GSM27960" ], "type": "individual", "id": "GDS738_4" }, { "dataset_id": "GDS738", "description": "62 year old", "sample_id": [ "GSM27962", "GSM27965" ], "type": "individual", "id": "GDS738_5" }, { "dataset_id": "GDS738", "description": "29 year old", "sample_id": [ "GSM27966", "GSM27968", "GSM27970" ], "type": "individual", "id": "GDS738_6" }, { "dataset_id": "GDS738", "description": "50 year old", "sample_id": [ "GSM27972", "GSM27974", "GSM27976" ], "type": "individual", "id": "GDS738_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS738", "version": 1.0, "instances": "11", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS738.tab", "compression": "gz" } ], [ [ "GDS739.tab" ], { "title": "Orofacial development in embryo", "description": "Developmental gene expression profiling of fetal orofacial tissue from gestation day (GD) 12-14 embryos.", "type": "Expression profiling by array", "pubmed_id": [ "16933306", "15578713" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1624", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS739", "description": "GD12", "sample_id": [ "GSM27676", "GSM27677", "GSM27678" ], "type": "development stage", "id": "GDS739_1" }, { "dataset_id": "GDS739", "description": "GD13", "sample_id": [ "GSM27679", "GSM27680", "GSM27681" ], "type": "development stage", "id": "GDS739_2" }, { "dataset_id": "GDS739", "description": "GD14", "sample_id": [ "GSM27682", "GSM27683", "GSM27684" ], "type": "development stage", "id": "GDS739_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS739", "version": 1.0, "instances": "9", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS739.tab", "compression": "gz" } ], [ [ "GDS742.tab" ], { "title": "Compensated and decompensated hypertrophies induced by monocrotaline", "description": "Analysis of compensated and decompensated hypertrophies induced by monocrotaline in Wistar. Left and right heart ventricles examined 14 days after monocrotaline injection. Decompensated hypertrophy is a prelude to chronic heart failure.", "type": "Expression profiling by array", "pubmed_id": "15728335", "platform": "GPL1397", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "4803", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE1652", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS742", "description": "left ventricle", "sample_id": [ "GSM28687", "GSM28688", "GSM28689", "GSM28690", "GSM28691", "GSM28692" ], "type": "tissue", "id": "GDS742_1" }, { "dataset_id": "GDS742", "description": "right ventricle", "sample_id": [ "GSM28418", "GSM28419", "GSM28420", "GSM28421", "GSM28422", "GSM28423", "GSM28424", "GSM28425", "GSM28426", "GSM28427", "GSM28428", "GSM28429", "GSM28430", "GSM28431", "GSM28432", "GSM28433", "GSM28434", "GSM28435" ], "type": "tissue", "id": "GDS742_2" }, { "dataset_id": "GDS742", "description": "control", "sample_id": [ "GSM28430", "GSM28431", "GSM28432", "GSM28433", "GSM28434", "GSM28435", "GSM28691", "GSM28692" ], "type": "disease state", "id": "GDS742_3" }, { "dataset_id": "GDS742", "description": "compensated hypertrophy", "sample_id": [ "GSM28418", "GSM28419", "GSM28420", "GSM28421", "GSM28422", "GSM28423", "GSM28687", "GSM28688" ], "type": "disease state", "id": "GDS742_4" }, { "dataset_id": "GDS742", "description": "decompensated hypertrophy", "sample_id": [ "GSM28424", "GSM28425", "GSM28426", "GSM28427", "GSM28428", "GSM28429", "GSM28689", "GSM28690" ], "type": "disease state", "id": "GDS742_5" } ], "taxid": "10116", "genes": 4646, "aggregation_function": "mean", "name": "GDS742", "version": 1.0, "instances": "24", "variables": 4649, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS742.tab", "compression": "gz" } ], [ [ "GDS743.tab" ], { "title": "Brassinosteroid effects on wild type and yucca mutant seedlings", "description": "Analysis of brassinolide treatment on 10 day old light-grown Columbia-O wild type and yucca mutant seedlings. Yucca mutants overproduce auxin. Brassinosteroids (BRs) promote cell expansion.", "type": "Expression profiling by array", "pubmed_id": "15328536", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE862", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS743", "description": "wild type", "sample_id": [ "GSM13420", "GSM13421", "GSM13423", "GSM13424" ], "type": "strain", "id": "GDS743_1" }, { "dataset_id": "GDS743", "description": "yucca", "sample_id": [ "GSM13426", "GSM13427", "GSM13428", "GSM13429" ], "type": "strain", "id": "GDS743_2" }, { "dataset_id": "GDS743", "description": "control", "sample_id": [ "GSM13420", "GSM13421", "GSM13426", "GSM13427" ], "type": "agent", "id": "GDS743_3" }, { "dataset_id": "GDS743", "description": "BR", "sample_id": [ "GSM13423", "GSM13424", "GSM13428", "GSM13429" ], "type": "agent", "id": "GDS743_4" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS743", "version": 1.0, "instances": "8", "variables": 22284, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS743.tab", "compression": "gz" } ], [ [ "GDS744.tab" ], { "title": "Auxin effects on seedlings", "description": "Analysis of effects of indole-3-acetic acid (IAA, auxin) treatment on 5 day old light-grown Columbia-0 seedlings. Auxins promote cell expansion.", "type": "Expression profiling by array", "pubmed_id": "15328536", "platform": "GPL198", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22810", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE863", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS744", "description": "control", "sample_id": [ "GSM13430", "GSM13432" ], "type": "agent", "id": "GDS744_1" }, { "dataset_id": "GDS744", "description": "auxin", "sample_id": [ "GSM13433", "GSM13434" ], "type": "agent", "id": "GDS744_2" } ], "taxid": "3702", "genes": 22281, "aggregation_function": "mean", "name": "GDS744", "version": 1.0, "instances": "4", "variables": 22283, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS744.tab", "compression": "gz" } ], [ [ "GDS748.tab" ], { "title": "Beta-catenin S37A mutant effect on gene expression", "description": "Expression profiling of 293T cells infected with RCAS vector carrying beta-catenin S37A mutant. Beta-catenin S37A mutant is oncogenic and more stable than the corresponding wild type protein.", "type": "Expression profiling by array", "pubmed_id": "15592430", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1473", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS748", "description": "control", "sample_id": [ "GSM24862", "GSM24863", "GSM24864", "GSM24865" ], "type": "cell line", "id": "GDS748_1" }, { "dataset_id": "GDS748", "description": "beta-catenin S37A", "sample_id": [ "GSM24858", "GSM24859", "GSM24860", "GSM24861" ], "type": "cell line", "id": "GDS748_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS748", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS748.tab", "compression": "gz" } ], [ [ "GDS750.tab" ], { "title": "HAC1 transcription and unfolded protein response", "description": "Strains expressing HAC1 under various promoters were grown at 30\u00b0C, or shifted from 23\u00b0C to 37\u00b0C, and treated with 6mM DTT or tunicamycin for 60 minutes. DTT and tunicamycin activate the unfolded protein response (UPR) which is regulated by Hac1p.", "type": "Expression profiling by array", "pubmed_id": "15314654", "platform": "GPL999", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6091", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "13", "value_type": "log ratio", "reference_series": "GSE1119", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS750", "description": "tunicamycin", "sample_id": [ "GSM16979", "GSM29008" ], "type": "agent", "id": "GDS750_1" }, { "dataset_id": "GDS750", "description": "DTT", "sample_id": [ "GSM16978", "GSM16980", "GSM16981", "GSM16982", "GSM16983", "GSM16984", "GSM29007", "GSM29009", "GSM29010", "GSM29011", "GSM29012" ], "type": "agent", "id": "GDS750_2" }, { "dataset_id": "GDS750", "description": "wild type", "sample_id": [ "GSM16978", "GSM16979", "GSM29007", "GSM29008" ], "type": "genotype/variation", "id": "GDS750_3" }, { "dataset_id": "GDS750", "description": "delta-hac1", "sample_id": [ "GSM16980", "GSM29009" ], "type": "genotype/variation", "id": "GDS750_4" }, { "dataset_id": "GDS750", "description": "HAC1proWT", "sample_id": [ "GSM16981", "GSM16982", "GSM29010", "GSM29011" ], "type": "genotype/variation", "id": "GDS750_5" }, { "dataset_id": "GDS750", "description": "HAC1proHI", "sample_id": [ "GSM16983", "GSM29012" ], "type": "genotype/variation", "id": "GDS750_6" }, { "dataset_id": "GDS750", "description": "ADH1proHAC1", "sample_id": [ "GSM16984" ], "type": "genotype/variation", "id": "GDS750_7" }, { "dataset_id": "GDS750", "description": "30\u00b0C", "sample_id": [ "GSM16978", "GSM16979", "GSM16980", "GSM16981", "GSM16983", "GSM29007", "GSM29008", "GSM29009", "GSM29010", "GSM29012" ], "type": "temperature", "id": "GDS750_8" }, { "dataset_id": "GDS750", "description": "23\u00b0C to 37\u00b0C", "sample_id": [ "GSM16982", "GSM16984", "GSM29011" ], "type": "temperature", "id": "GDS750_9" } ], "taxid": "4932", "genes": 6031, "aggregation_function": "mean", "name": "GDS750", "version": 1.0, "instances": "13", "variables": 6035, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS750.tab", "compression": "gz" } ], [ [ "GDS751.tab" ], { "title": "Natural killer cell expression profiling", "description": "Expression profiling of CD56dimCD16+, CD56brightCD16-, and in vitro activated CD56+CD16+ natural killer (NK) cells. NK cells derived from purified peripheral blood pooled from 9 healthy donors.", "type": "Expression profiling by array", "pubmed_id": "15557145", "platform": "GPL1313", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20470", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1511", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS751", "description": "CD56dimCD16+", "sample_id": [ "GSM26200", "GSM26201" ], "type": "cell type", "id": "GDS751_1" }, { "dataset_id": "GDS751", "description": "CD56brightCD16-", "sample_id": [ "GSM26202", "GSM26203" ], "type": "cell type", "id": "GDS751_2" }, { "dataset_id": "GDS751", "description": "CD56+CD16+", "sample_id": [ "GSM26204", "GSM26205" ], "type": "cell type", "id": "GDS751_3" }, { "dataset_id": "GDS751", "description": "not activated", "sample_id": [ "GSM26200", "GSM26201", "GSM26202", "GSM26203" ], "type": "protocol", "id": "GDS751_4" }, { "dataset_id": "GDS751", "description": "activated", "sample_id": [ "GSM26204", "GSM26205" ], "type": "protocol", "id": "GDS751_5" } ], "taxid": "9606", "genes": 16513, "aggregation_function": "mean", "name": "GDS751", "version": 1.0, "instances": "6", "variables": 16516, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS751.tab", "compression": "gz" } ], [ [ "GDS752.tab" ], { "title": "Blastocyst dormancy and activation comparison", "description": "Comparison of gene expression in dormant and active blastocysts. Dormancy induced by ovariectomy and maintained by progesterone injections. Dormant blastocysts activated by estradiol-17 beta injections. Results provide insight into delayed implantation.", "type": "Expression profiling by array", "pubmed_id": "15232000", "platform": "GPL870", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE1634", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS752", "description": "dormant blastocyst", "sample_id": [ "GSM27753", "GSM27754", "GSM27755" ], "type": "development stage", "id": "GDS752_1" }, { "dataset_id": "GDS752", "description": "active blastocyst", "sample_id": [ "GSM27756", "GSM27757", "GSM27758" ], "type": "development stage", "id": "GDS752_2" } ], "taxid": "10090", "genes": 17383, "aggregation_function": "mean", "name": "GDS752", "version": 1.0, "instances": "6", "variables": 17385, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS752.tab", "compression": "gz" } ], [ [ "GDS755.tab" ], { "title": "CD8 T cell development (Mu11K-B)", "description": "Expression profiling of na\u00efve and memory CD8 T cells from female RAG1-deficient transgenics expressing B6.2.16 T cell receptors specific for the human Y antigen. Genes protecting against programmed cell death upregulated in memory CD8 T cells.", "type": "Expression profiling by array", "pubmed_id": "15311278", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1578", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS755", "description": "memory", "sample_id": [ "GSM27137" ], "type": "development stage", "id": "GDS755_1" }, { "dataset_id": "GDS755", "description": "naive", "sample_id": [ "GSM27774" ], "type": "development stage", "id": "GDS755_2" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS755", "version": 1.0, "instances": "2", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS755.tab", "compression": "gz" } ], [ [ "GDS756.tab" ], { "title": "Colon cancer progression", "description": "Comparison of gene expression in SW480, a primary tumor colon cancer cell line, to that in SW620, an isogenic metastatic colon cancer cell line. Cell lines derived from one individual. Results provide insight the progression of cancer from primary tumor growth to metastasis.", "type": "Expression profiling by array", "pubmed_id": "16531451", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1323", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS756", "description": "primary tumor", "sample_id": [ "GSM21712", "GSM21713", "GSM21714" ], "type": "disease state", "id": "GDS756_1" }, { "dataset_id": "GDS756", "description": "metastasic tumor", "sample_id": [ "GSM21715", "GSM21716", "GSM21718" ], "type": "disease state", "id": "GDS756_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS756", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS756.tab", "compression": "gz" } ], [ [ "GDS759.tab" ], { "title": "Pre-mRNA splicing factor mutants at restrictive temperature: time course", "description": "Analysis of gene expression in temperature sensitive pre-mRNA splicing factor mutants prp17 null, prp17-1, and prp22-1 at various time points following a shift from the permissive temperature of 23\u00b0C to the restrictive temperature of 37\u00b0C. Results identify substrates of Prp17p and Prp22p.", "type": "Expression profiling by array", "pubmed_id": "15452114", "platform": "GPL1458", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "6350", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE1784", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS759", "description": "wild type", "sample_id": [ "GSM30876", "GSM30877", "GSM30878", "GSM30879", "GSM30880", "GSM30881" ], "type": "genotype/variation", "id": "GDS759_1" }, { "dataset_id": "GDS759", "description": "prp17 null", "sample_id": [ "GSM30882", "GSM30883", "GSM30884", "GSM30885", "GSM30886", "GSM30887" ], "type": "genotype/variation", "id": "GDS759_2" }, { "dataset_id": "GDS759", "description": "prp17-1", "sample_id": [ "GSM30888", "GSM30889", "GSM30890", "GSM30891", "GSM30892", "GSM30893" ], "type": "genotype/variation", "id": "GDS759_3" }, { "dataset_id": "GDS759", "description": "prp22-1", "sample_id": [ "GSM30894", "GSM30895", "GSM30896", "GSM30897", "GSM30898", "GSM30899" ], "type": "genotype/variation", "id": "GDS759_4" }, { "dataset_id": "GDS759", "description": "23\u00b0C", "sample_id": [ "GSM30876", "GSM30882", "GSM30888", "GSM30894" ], "type": "temperature", "id": "GDS759_5" }, { "dataset_id": "GDS759", "description": "37\u00b0C", "sample_id": [ "GSM30877", "GSM30878", "GSM30879", "GSM30880", "GSM30881", "GSM30883", "GSM30884", "GSM30885", "GSM30886", "GSM30887", "GSM30889", "GSM30890", "GSM30891", "GSM30892", "GSM30893", "GSM30895", "GSM30896", "GSM30897", "GSM30898", "GSM30899" ], "type": "temperature", "id": "GDS759_6" }, { "dataset_id": "GDS759", "description": "0 min", "sample_id": [ "GSM30876", "GSM30882", "GSM30888", "GSM30894" ], "type": "time", "id": "GDS759_7" }, { "dataset_id": "GDS759", "description": "5 min", "sample_id": [ "GSM30877", "GSM30883", "GSM30889", "GSM30895" ], "type": "time", "id": "GDS759_8" }, { "dataset_id": "GDS759", "description": "15 min", "sample_id": [ "GSM30878", "GSM30884", "GSM30890", "GSM30896" ], "type": "time", "id": "GDS759_9" }, { "dataset_id": "GDS759", "description": "30 min", "sample_id": [ "GSM30879", "GSM30885", "GSM30891", "GSM30897" ], "type": "time", "id": "GDS759_10" }, { "dataset_id": "GDS759", "description": "60 min", "sample_id": [ "GSM30880", "GSM30886", "GSM30892", "GSM30898" ], "type": "time", "id": "GDS759_11" }, { "dataset_id": "GDS759", "description": "120 min", "sample_id": [ "GSM30881", "GSM30887", "GSM30893", "GSM30899" ], "type": "time", "id": "GDS759_12" } ], "taxid": "4932", "genes": 6316, "aggregation_function": "mean", "name": "GDS759", "version": 1.0, "instances": "24", "variables": 6320, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS759.tab", "compression": "gz" } ], [ [ "GDS761.tab" ], { "title": "Essential thrombocythemia expression profiling", "description": "Expression profiling of malignant megakaryocytes (MK) from 6 donors with essential thrombocythemia (ET). MK derived from bone marrow CD34+ hematopoietic progenitor cells. Progenitors induced to differentiate into MK by treatment with 100 ng/ml thrombopoietin. Apoptotic pathway is impaired in ET.", "type": "Expression profiling by array", "pubmed_id": "15271793", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE997", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS761", "description": "normal", "sample_id": [ "GSM15648" ], "type": "disease state", "id": "GDS761_1" }, { "dataset_id": "GDS761", "description": "malignant", "sample_id": [ "GSM15650" ], "type": "disease state", "id": "GDS761_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS761", "version": 1.0, "instances": "2", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS761.tab", "compression": "gz" } ], [ [ "GDS765.tab" ], { "title": "Fatty liver disease induced by orotic acid: time course", "description": "Expression profiling of livers from inbred Kyotos and outbred Wistars fed a diet with 1% orotic acid to induce fatty liver disease. Profiles examined at various time points up to 14 days. Results used together with NMR spectroscopic analysis of the liver to identify perturbed metabolic pathways.", "type": "Expression profiling by array", "pubmed_id": "14747661", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE665", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS765", "description": "0 d", "sample_id": [ "GSM10001", "GSM10002", "GSM10009", "GSM10010", "GSM13064" ], "type": "time", "id": "GDS765_1" }, { "dataset_id": "GDS765", "description": "1 d", "sample_id": [ "GSM9995", "GSM9996", "GSM10003", "GSM10004" ], "type": "time", "id": "GDS765_2" }, { "dataset_id": "GDS765", "description": "3 d", "sample_id": [ "GSM9997", "GSM9998", "GSM10005", "GSM10006" ], "type": "time", "id": "GDS765_3" }, { "dataset_id": "GDS765", "description": "14 d", "sample_id": [ "GSM9999", "GSM10000", "GSM10007", "GSM10008", "GSM13063" ], "type": "time", "id": "GDS765_4" }, { "dataset_id": "GDS765", "description": "Wistar", "sample_id": [ "GSM10003", "GSM10004", "GSM10005", "GSM10006", "GSM10007", "GSM10008", "GSM10009", "GSM10010", "GSM13063", "GSM13064" ], "type": "strain", "id": "GDS765_5" }, { "dataset_id": "GDS765", "description": "Kyoto", "sample_id": [ "GSM9995", "GSM9996", "GSM9997", "GSM9998", "GSM9999", "GSM10000", "GSM10001", "GSM10002" ], "type": "strain", "id": "GDS765_6" }, { "dataset_id": "GDS765", "description": "control", "sample_id": [ "GSM10001", "GSM10002", "GSM10009", "GSM10010", "GSM13064" ], "type": "agent", "id": "GDS765_7" }, { "dataset_id": "GDS765", "description": "orotic acid", "sample_id": [ "GSM9995", "GSM9996", "GSM9997", "GSM9998", "GSM9999", "GSM10000", "GSM10003", "GSM10004", "GSM10005", "GSM10006", "GSM10007", "GSM10008", "GSM13063" ], "type": "agent", "id": "GDS765_8" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS765", "version": 1.0, "instances": "18", "variables": 6079, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS765.tab", "compression": "gz" } ], [ [ "GDS766.tab" ], { "title": "Osteoclastogenesis regulation by c-Fos and Nfat", "description": "Analysis of the role of c-Fos and Nfat in osteoclastogenesis by expression profiling of osteoclastogenic splenocytes lacking c-Fos but with an active Nfatc4. Active Nfatc4 introduced into cells by retroviral gene transfer. Osteoclastogenesis restored by active Nfatc4 in splenocytes lacking c-Fos.", "type": "Expression profiling by array", "pubmed_id": "15073183", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE676", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS766", "description": "bone marrow", "sample_id": [ "GSM10343" ], "type": "cell type", "id": "GDS766_1" }, { "dataset_id": "GDS766", "description": "splenocyte", "sample_id": [ "GSM10341", "GSM10342", "GSM10344", "GSM10345" ], "type": "cell type", "id": "GDS766_2" }, { "dataset_id": "GDS766", "description": "no transfection", "sample_id": [ "GSM10341", "GSM10342", "GSM10343" ], "type": "protocol", "id": "GDS766_3" }, { "dataset_id": "GDS766", "description": "GFP", "sample_id": [ "GSM10345" ], "type": "protocol", "id": "GDS766_4" }, { "dataset_id": "GDS766", "description": "active Nfat", "sample_id": [ "GSM10344" ], "type": "protocol", "id": "GDS766_5" }, { "dataset_id": "GDS766", "description": "Fos present", "sample_id": [ "GSM10341", "GSM10343" ], "type": "genotype/variation", "id": "GDS766_6" }, { "dataset_id": "GDS766", "description": "Fos absent", "sample_id": [ "GSM10342", "GSM10344", "GSM10345" ], "type": "genotype/variation", "id": "GDS766_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS766", "version": 1.0, "instances": "5", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS766.tab", "compression": "gz" } ], [ [ "GDS767.tab" ], { "title": "RNA-dependent serine/threonine protein kinase PKR overexpression (Mu11K-A)", "description": "Analysis of gene expression in NIH3T3 overexpressing RNA-dependent serine/threonine protein kinase (PKR) controlled by a tetracycline repressible promoter. PKR repressed in 1 ug/ml tetracycline and overexpressed upon tetracycline removal. PKR promotes cell survival before inducing cell death.", "type": "Expression profiling by array", "pubmed_id": "14749731", "platform": "GPL75", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6584", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE682", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS767", "description": "PKR repressed", "sample_id": [ "GSM10413" ], "type": "protocol", "id": "GDS767_1" }, { "dataset_id": "GDS767", "description": "PKR overexpressed", "sample_id": [ "GSM10411" ], "type": "protocol", "id": "GDS767_2" } ], "taxid": "10090", "genes": 5672, "aggregation_function": "mean", "name": "GDS767", "version": 1.0, "instances": "2", "variables": 5674, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS767.tab", "compression": "gz" } ], [ [ "GDS768.tab" ], { "title": "RNA-dependent serine/threonine protein kinase PKR overexpression (Mu11K-B)", "description": "Analysis of gene expression in NIH3T3 overexpressing RNA-dependent serine/threonine protein kinase (PKR) controlled by a tetracycline repressible promoter. PKR repressed in 1 ug/ml tetracycline and overexpressed upon tetracycline removal. PKR promotes cell survival before inducing cell death.", "type": "Expression profiling by array", "pubmed_id": "14749731", "platform": "GPL76", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6595", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE682", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS768", "description": "PKR repressed", "sample_id": [ "GSM10414" ], "type": "protocol", "id": "GDS768_1" }, { "dataset_id": "GDS768", "description": "PKR overexpressed", "sample_id": [ "GSM10412" ], "type": "protocol", "id": "GDS768_2" } ], "taxid": "10090", "genes": 6160, "aggregation_function": "mean", "name": "GDS768", "version": 1.0, "instances": "2", "variables": 6162, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS768.tab", "compression": "gz" } ], [ [ "GDS769.tab" ], { "title": "Glioma cell migration: comparison of fast and slow invading cells", "description": "Analysis of glioma migration by comparing expression profiles of fast and slow invading C6 glial cells. Fast and slow cells separated using monolayer migration assay and by extent of migration of transplants in nude mice brains. Results provide insight into mechanisms underlying glioma invasion.", "type": "Expression profiling by array", "pubmed_id": "15779236", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE1139", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS769", "description": "monolayer migration assay", "sample_id": [ "GSM19098", "GSM19099", "GSM19100", "GSM19101" ], "type": "protocol", "id": "GDS769_1" }, { "dataset_id": "GDS769", "description": "transplanted into brain", "sample_id": [ "GSM19102", "GSM19103", "GSM19105" ], "type": "protocol", "id": "GDS769_2" }, { "dataset_id": "GDS769", "description": "slow", "sample_id": [ "GSM19098", "GSM19099", "GSM19102", "GSM19103" ], "type": "cell type", "id": "GDS769_3" }, { "dataset_id": "GDS769", "description": "fast", "sample_id": [ "GSM19100", "GSM19101", "GSM19105" ], "type": "cell type", "id": "GDS769_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS769", "version": 1.0, "instances": "7", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS769.tab", "compression": "gz" } ], [ [ "GDS77.tab" ], { "title": "Macrophages infected with Salmonella (SHAD2)", "description": "Identification of host pathways affected by the Salmonella virulence transcription factor phoP. phoP found to play a role in Salmonella-induced human macrophage cell death.", "type": "Expression profiling by array", "pubmed_id": "11320214", "platform": "GPL177", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "24192", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE503", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS77", "description": "wildtype", "sample_id": [ "GSM1802" ], "type": "infection", "id": "GDS77_1" }, { "dataset_id": "GDS77", "description": "phoP mutant", "sample_id": [ "GSM1803" ], "type": "infection", "id": "GDS77_2" } ], "taxid": "9606", "genes": 20670, "aggregation_function": "mean", "name": "GDS77", "version": 1.0, "instances": "2", "variables": 20672, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS77.tab", "compression": "gz" } ], [ [ "GDS770.tab" ], { "title": "Long-lived daf-2 insulin/IGF-1 receptor mutant expression profiling", "description": "Analysis of gene expression in long-lived daf-2 mutants for the insulin/IGF-1 receptor. daf-2(e1370) and daf-2(m577) alleles each examined as single and as double mutations with the daf-16(df50) allele. DAF-2 regulates DAF-16, a transcription factor. Results provide insight into longevity.", "type": "Expression profiling by array", "pubmed_id": "15308663", "platform": "GPL200", "platform_organism": "Caenorhabditis elegans", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22625", "sample_organism": "Caenorhabditis elegans", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "transformed count", "reference_series": "GSE1762", "order": "none", "update_date": "Oct 15 2004", "subsets": [ { "dataset_id": "GDS770", "description": "daf-2(e1370)", "sample_id": [ "GSM28389", "GSM28390", "GSM28391", "GSM28392", "GSM28393" ], "type": "genotype/variation", "id": "GDS770_1" }, { "dataset_id": "GDS770", "description": "daf-2(m577)", "sample_id": [ "GSM28394", "GSM28395", "GSM28396", "GSM28397", "GSM28398" ], "type": "genotype/variation", "id": "GDS770_2" }, { "dataset_id": "GDS770", "description": "daf-2(e1370) daf-16(df50)", "sample_id": [ "GSM28399", "GSM28400", "GSM28401", "GSM28402", "GSM28403" ], "type": "genotype/variation", "id": "GDS770_3" }, { "dataset_id": "GDS770", "description": "daf-2(m577) daf-16(df50)", "sample_id": [ "GSM28404", "GSM28405", "GSM28406", "GSM28407", "GSM28408" ], "type": "genotype/variation", "id": "GDS770_4" } ], "taxid": "6239", "genes": 18535, "aggregation_function": "mean", "name": "GDS770", "version": 1.0, "instances": "20", "variables": 18537, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS770.tab", "compression": "gz" } ], [ [ "GDS771.tab" ], { "title": "Hematopoietic stem cell proliferation after 5-fluorouracil treatment: time course", "description": "Expression profiling of bone marrow Sca+ SP hematopoeitic stem cells (HSC) and fetal liver HSCs of C57BL/6. Bone marrow HSCs examined at various time points up to 30 days after treating mice with 150 mg/kg 5-fluorouracil. Results identify signatures for quiescent and proliferating HSCs.", "type": "Expression profiling by array", "pubmed_id": "15459755", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1559", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS771", "description": "fetal liver", "sample_id": [ "GSM26748", "GSM26749" ], "type": "tissue", "id": "GDS771_1" }, { "dataset_id": "GDS771", "description": "bone marrow", "sample_id": [ "GSM26734", "GSM26735", "GSM26736", "GSM26737", "GSM26738", "GSM26739", "GSM26740", "GSM26741", "GSM26742", "GSM26743", "GSM26744", "GSM26745", "GSM26746", "GSM26747" ], "type": "tissue", "id": "GDS771_2" }, { "dataset_id": "GDS771", "description": "untreated", "sample_id": [ "GSM26734", "GSM26735", "GSM26748", "GSM26749" ], "type": "agent", "id": "GDS771_3" }, { "dataset_id": "GDS771", "description": "5-fluorouracil", "sample_id": [ "GSM26736", "GSM26737", "GSM26738", "GSM26739", "GSM26740", "GSM26741", "GSM26742", "GSM26743", "GSM26744", "GSM26745", "GSM26746", "GSM26747" ], "type": "agent", "id": "GDS771_4" }, { "dataset_id": "GDS771", "description": "12.5 - 14.5 dpc", "sample_id": [ "GSM26748", "GSM26749" ], "type": "time", "id": "GDS771_5" }, { "dataset_id": "GDS771", "description": "0 d", "sample_id": [ "GSM26734", "GSM26735" ], "type": "time", "id": "GDS771_6" }, { "dataset_id": "GDS771", "description": "1 d", "sample_id": [ "GSM26736", "GSM26737" ], "type": "time", "id": "GDS771_7" }, { "dataset_id": "GDS771", "description": "2 d", "sample_id": [ "GSM26738", "GSM26739" ], "type": "time", "id": "GDS771_8" }, { "dataset_id": "GDS771", "description": "3 d", "sample_id": [ "GSM26740", "GSM26741" ], "type": "time", "id": "GDS771_9" }, { "dataset_id": "GDS771", "description": "6 d", "sample_id": [ "GSM26742", "GSM26743" ], "type": "time", "id": "GDS771_10" }, { "dataset_id": "GDS771", "description": "10 d", "sample_id": [ "GSM26744", "GSM26745" ], "type": "time", "id": "GDS771_11" }, { "dataset_id": "GDS771", "description": "30 d", "sample_id": [ "GSM26746", "GSM26747" ], "type": "time", "id": "GDS771_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS771", "version": 1.0, "instances": "16", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS771.tab", "compression": "gz" } ], [ [ "GDS772.tab" ], { "title": "Histone deacetylase RPD3 deletion and histone mutations effect on gene regulation", "description": "Analysis of gene regulation by expression profiling of single mutants for histone deacetylase RPD3, histones H3 and H4, and double mutants for either RPD3 and H3 or RPD3 and H4. Histone mutants defective in amino terminal tails, which are acetylated and deacetylated in transcription regulation.", "type": "Expression profiling by array", "pubmed_id": "15456858", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1639", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS772", "description": "wild type", "sample_id": [ "GSM27837", "GSM27838", "GSM27839" ], "type": "genotype/variation", "id": "GDS772_1" }, { "dataset_id": "GDS772", "description": "rpd3 delete", "sample_id": [ "GSM27840", "GSM27841" ], "type": "genotype/variation", "id": "GDS772_2" }, { "dataset_id": "GDS772", "description": "H3delta(1-28)", "sample_id": [ "GSM27842", "GSM27843" ], "type": "genotype/variation", "id": "GDS772_3" }, { "dataset_id": "GDS772", "description": "H3(K4,9,14,18,23,27Q)", "sample_id": [ "GSM27844", "GSM27845", "GSM27846" ], "type": "genotype/variation", "id": "GDS772_4" }, { "dataset_id": "GDS772", "description": "H4delta(2-26)", "sample_id": [ "GSM27847", "GSM27848" ], "type": "genotype/variation", "id": "GDS772_5" }, { "dataset_id": "GDS772", "description": "H4(K5,8,12,16Q)", "sample_id": [ "GSM27849", "GSM27850" ], "type": "genotype/variation", "id": "GDS772_6" }, { "dataset_id": "GDS772", "description": "rpd3 delete H3delta(1-28)", "sample_id": [ "GSM27851", "GSM27852" ], "type": "genotype/variation", "id": "GDS772_7" }, { "dataset_id": "GDS772", "description": "rpd3 delete H4(K5,8,12,16Q)", "sample_id": [ "GSM27853", "GSM27854" ], "type": "genotype/variation", "id": "GDS772_8" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS772", "version": 1.0, "instances": "18", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS772.tab", "compression": "gz" } ], [ [ "GDS773.tab" ], { "title": "Retinoic acid teratogenic effect on cranial neural crest: time course", "description": "Expression profiling of cranial neural crest exposed to 1 uM retinoic acid (RA) at various lengths of time up to 48 hours. Neural crest obtained from 8.5 days postcoitum ICR embryos. Results provide insight into developmental pathways affected upon exposure to teratogenic concentrations of RA.", "type": "Expression profiling by array", "pubmed_id": "15466718", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "27", "value_type": "transformed count", "reference_series": "GSE1588", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS773", "description": "untreated", "sample_id": [ "GSM24606", "GSM27252", "GSM27253", "GSM27257", "GSM27258", "GSM27259", "GSM27263", "GSM27264", "GSM27265", "GSM27266", "GSM27271", "GSM27272", "GSM27273", "GSM27274" ], "type": "agent", "id": "GDS773_1" }, { "dataset_id": "GDS773", "description": "retinoic acid", "sample_id": [ "GSM27254", "GSM27255", "GSM27256", "GSM27260", "GSM27261", "GSM27262", "GSM27267", "GSM27268", "GSM27269", "GSM27270", "GSM27275", "GSM27276", "GSM27277" ], "type": "agent", "id": "GDS773_2" }, { "dataset_id": "GDS773", "description": "6 h", "sample_id": [ "GSM24606", "GSM27252", "GSM27253", "GSM27254", "GSM27255", "GSM27256" ], "type": "time", "id": "GDS773_3" }, { "dataset_id": "GDS773", "description": "12 h", "sample_id": [ "GSM27257", "GSM27258", "GSM27259", "GSM27260", "GSM27261", "GSM27262" ], "type": "time", "id": "GDS773_4" }, { "dataset_id": "GDS773", "description": "24 h", "sample_id": [ "GSM27263", "GSM27264", "GSM27265", "GSM27266", "GSM27267", "GSM27268", "GSM27269", "GSM27270" ], "type": "time", "id": "GDS773_5" }, { "dataset_id": "GDS773", "description": "48 h", "sample_id": [ "GSM27271", "GSM27272", "GSM27273", "GSM27274", "GSM27275", "GSM27276", "GSM27277" ], "type": "time", "id": "GDS773_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS773", "version": 1.0, "instances": "27", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS773.tab", "compression": "gz" } ], [ [ "GDS775.tab" ], { "title": "Typical and atypical antipsychotic drugs effect on brain", "description": "Examination of brains from 13 week ddY males treated for 28 days with an antipsychotic: either the typical drugs chlorpromazine and thioridazine (25 mg/kg each) or the atypical drugs olanzapine (1.25 mg/kg) and quetiapine (18.75 mg/kg). Results provide insight into schizophrenia negative symptoms.", "type": "Expression profiling by array", "pubmed_id": "16722469", "platform": "GPL891", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE1501", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS775", "description": "chlorpromazine", "sample_id": [ "GSM25980" ], "type": "agent", "id": "GDS775_1" }, { "dataset_id": "GDS775", "description": "thioridazine", "sample_id": [ "GSM25983" ], "type": "agent", "id": "GDS775_2" }, { "dataset_id": "GDS775", "description": "olanzapine", "sample_id": [ "GSM25981" ], "type": "agent", "id": "GDS775_3" }, { "dataset_id": "GDS775", "description": "quetiapine", "sample_id": [ "GSM25982" ], "type": "agent", "id": "GDS775_4" }, { "dataset_id": "GDS775", "description": "typical", "sample_id": [ "GSM25980", "GSM25983" ], "type": "other", "id": "GDS775_5" }, { "dataset_id": "GDS775", "description": "atypical", "sample_id": [ "GSM25981", "GSM25982" ], "type": "other", "id": "GDS775_6" } ], "taxid": "10090", "genes": 19518, "aggregation_function": "mean", "name": "GDS775", "version": 1.0, "instances": "4", "variables": 19521, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS775.tab", "compression": "gz" } ], [ [ "GDS776.tab" ], { "title": "Interferon-alpha effect on monocytes primed with interferon-gamma", "description": "Expression profiling of monocytes cultured for 2 days with 150 pg/ml interferon (IFN) gamma and then stimulated with 25 ng/ml of IFN-alpha. Monocytes obtained from 3 donors. Results provide insight into mechanisms underlying the enhanced response of IFN primed monocytes to cytokines.", "type": "Expression profiling by array", "pubmed_id": "15467722", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1740", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS776", "description": "unprimed", "sample_id": [ "GSM30375", "GSM30377", "GSM30381", "GSM30384", "GSM30389", "GSM30390" ], "type": "protocol", "id": "GDS776_1" }, { "dataset_id": "GDS776", "description": "IFN-gamma primed", "sample_id": [ "GSM30379", "GSM30380", "GSM30386", "GSM30388", "GSM30391", "GSM30392" ], "type": "protocol", "id": "GDS776_2" }, { "dataset_id": "GDS776", "description": "unstimulated", "sample_id": [ "GSM30375", "GSM30379", "GSM30381", "GSM30386", "GSM30389", "GSM30391" ], "type": "agent", "id": "GDS776_3" }, { "dataset_id": "GDS776", "description": "IFN-alpha stimulated", "sample_id": [ "GSM30377", "GSM30380", "GSM30384", "GSM30388", "GSM30390", "GSM30392" ], "type": "agent", "id": "GDS776_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS776", "version": 1.0, "instances": "12", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS776.tab", "compression": "gz" } ], [ [ "GDS777.tab" ], { "title": "Nutrient limitation under aerobic and anaerobic conditions effect on gene expression", "description": "Expression profiling of MATa CEN.PK113-7D chemostat cultures grown either aerobically or anaerobically in media limited for either glucose, nitrogen, phosphorous, or sulfur. Results provide insight into the interaction between oxygen and nutrient responsive pathways.", "type": "Expression profiling by array", "pubmed_id": [ "15496405", "17241460", "12414795" ], "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1723", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS777", "description": "aerobic", "sample_id": [ "GSM29912", "GSM29914", "GSM29917", "GSM29920", "GSM29921", "GSM29922", "GSM29924", "GSM29926", "GSM29927", "GSM29929", "GSM29930", "GSM29932" ], "type": "stress", "id": "GDS777_1" }, { "dataset_id": "GDS777", "description": "anaerobic", "sample_id": [ "GSM29934", "GSM29936", "GSM29937", "GSM29939", "GSM29940", "GSM29942", "GSM29943", "GSM29945", "GSM29946", "GSM29948", "GSM29949", "GSM29951" ], "type": "stress", "id": "GDS777_2" }, { "dataset_id": "GDS777", "description": "glucose limited", "sample_id": [ "GSM29912", "GSM29914", "GSM29917", "GSM29934", "GSM29936", "GSM29937" ], "type": "growth protocol", "id": "GDS777_3" }, { "dataset_id": "GDS777", "description": "nitrogen limited", "sample_id": [ "GSM29920", "GSM29921", "GSM29922", "GSM29939", "GSM29940", "GSM29942" ], "type": "growth protocol", "id": "GDS777_4" }, { "dataset_id": "GDS777", "description": "phosphorous limited", "sample_id": [ "GSM29924", "GSM29926", "GSM29927", "GSM29943", "GSM29945", "GSM29946" ], "type": "growth protocol", "id": "GDS777_5" }, { "dataset_id": "GDS777", "description": "sulfur limited", "sample_id": [ "GSM29929", "GSM29930", "GSM29932", "GSM29948", "GSM29949", "GSM29951" ], "type": "growth protocol", "id": "GDS777_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS777", "version": 1.0, "instances": "24", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS777.tab", "compression": "gz" } ], [ [ "GDS778.tab" ], { "title": "Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34A)", "description": "Expression profiling of heart left ventricles from 15 week old inbred COP, DA, and COP x DA F1 offspring (low, high, and intermediate performers respectively). Results provide insight into mechanisms underlying aerobic capacity.", "type": "Expression profiling by array", "pubmed_id": "16033863", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1795", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS778", "description": "COP", "sample_id": [ "GSM30955", "GSM30957", "GSM30958", "GSM30959" ], "type": "strain", "id": "GDS778_1" }, { "dataset_id": "GDS778", "description": "COP x DA", "sample_id": [ "GSM30960", "GSM30961", "GSM30962", "GSM30963" ], "type": "strain", "id": "GDS778_2" }, { "dataset_id": "GDS778", "description": "DA", "sample_id": [ "GSM30964", "GSM30965", "GSM30966", "GSM30967" ], "type": "strain", "id": "GDS778_3" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS778", "version": 1.0, "instances": "12", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS778.tab", "compression": "gz" } ], [ [ "GDS779.tab" ], { "title": "Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34B)", "description": "Expression profiling of heart left ventricles from 15 week old inbred COP, DA, and COP x DA F1 offspring (low, high, and intermediate performers respectively). Results provide insight into mechanisms underlying aerobic capacity.", "type": "Expression profiling by array", "pubmed_id": "16033863", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1795", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS779", "description": "COP", "sample_id": [ "GSM30968", "GSM30969", "GSM30970", "GSM30971" ], "type": "strain", "id": "GDS779_1" }, { "dataset_id": "GDS779", "description": "COP x DA", "sample_id": [ "GSM30972", "GSM30973", "GSM30974", "GSM30975" ], "type": "strain", "id": "GDS779_2" }, { "dataset_id": "GDS779", "description": "DA", "sample_id": [ "GSM30976", "GSM30977", "GSM30978", "GSM30979" ], "type": "strain", "id": "GDS779_3" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS779", "version": 1.0, "instances": "12", "variables": 7620, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS779.tab", "compression": "gz" } ], [ [ "GDS78.tab" ], { "title": "Macrophages infected with Salmonella (SHAI2)", "description": "Identification of host pathways affected by the Salmonella virulence transcription factor phoP. phoP found to play a role in Salmonella-induced human macrophage cell death.", "type": "Expression profiling by array", "pubmed_id": "11320214", "platform": "GPL183", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "24192", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE503", "order": "none", "update_date": "Jul 23 2003", "subsets": [ { "dataset_id": "GDS78", "description": "phoP mutant", "sample_id": [ "GSM1794", "GSM1798", "GSM1801" ], "type": "infection", "id": "GDS78_1" }, { "dataset_id": "GDS78", "description": "mock", "sample_id": [ "GSM1792", "GSM1795", "GSM1796", "GSM1799" ], "type": "infection", "id": "GDS78_2" }, { "dataset_id": "GDS78", "description": "wildtype", "sample_id": [ "GSM1791", "GSM1793", "GSM1797", "GSM1800" ], "type": "infection", "id": "GDS78_3" }, { "dataset_id": "GDS78", "description": "1 hour", "sample_id": [ "GSM1798", "GSM1796", "GSM1797" ], "type": "time", "id": "GDS78_4" }, { "dataset_id": "GDS78", "description": "2 hour", "sample_id": [ "GSM1794", "GSM1795", "GSM1791", "GSM1793" ], "type": "time", "id": "GDS78_5" }, { "dataset_id": "GDS78", "description": "3 hour", "sample_id": [ "GSM1801", "GSM1799", "GSM1800" ], "type": "time", "id": "GDS78_6" }, { "dataset_id": "GDS78", "description": "4 hour", "sample_id": [ "GSM1792" ], "type": "time", "id": "GDS78_7" } ], "taxid": "9606", "genes": 20668, "aggregation_function": "mean", "name": "GDS78", "version": 1.0, "instances": "11", "variables": 20671, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS78.tab", "compression": "gz" } ], [ [ "GDS780.tab" ], { "title": "Aerobic running capacity: expression profiling of heart ventricles from various strains (RG-U34C)", "description": "Expression profiling of heart left ventricles from 15 week old inbred COP, DA, and COP x DA F1 offspring (low, high, and intermediate performers respectively). Results provide insight into mechanisms underlying aerobic capacity.", "type": "Expression profiling by array", "pubmed_id": "16033863", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1795", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS780", "description": "COP", "sample_id": [ "GSM30980", "GSM30981", "GSM30982", "GSM30983" ], "type": "strain", "id": "GDS780_1" }, { "dataset_id": "GDS780", "description": "COP x DA", "sample_id": [ "GSM30984", "GSM30985", "GSM30986", "GSM30987" ], "type": "strain", "id": "GDS780_2" }, { "dataset_id": "GDS780", "description": "DA", "sample_id": [ "GSM30988", "GSM30990", "GSM31003", "GSM31004" ], "type": "strain", "id": "GDS780_3" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS780", "version": 1.0, "instances": "12", "variables": 7584, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS780.tab", "compression": "gz" } ], [ [ "GDS781.tab" ], { "title": "CD14 cells from granulocyte colony stimulating factor mobilized peripheral blood: expression profile", "description": "Expression profiling of CD14+ cells isolated from granulocyte colony stimulating factor (G-CSF) mobilized peripheral blood mononuclear cells (G-PBMC). Cells collected from normal donors after 3 days of G-CSF stimulation. G-PBMCs may confer a survival advantage to allogeneic transplant recipients.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL80", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "7129", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1746", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS781", "description": "untreated", "sample_id": [ "GSM30459", "GSM30460", "GSM30461", "GSM30462", "GSM30463" ], "type": "agent", "id": "GDS781_1" }, { "dataset_id": "GDS781", "description": "G-CSF treated", "sample_id": [ "GSM30464", "GSM30465", "GSM30466", "GSM30467", "GSM30468" ], "type": "agent", "id": "GDS781_2" } ], "taxid": "9606", "genes": 6184, "aggregation_function": "mean", "name": "GDS781", "version": 1.0, "instances": "10", "variables": 6186, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS781.tab", "compression": "gz" } ], [ [ "GDS782.tab" ], { "title": "Lung apical membrane protein T1alpha null mutant effect on pulmonary development", "description": "Expression profiling of lungs from apical membrane protein T1alpha null mutants at 18.5 days post coitum and at birth. Lung alveolar epithelial type I cell differentiation is blocked in T1alpha null mutants. Results provide insight into mechanisms controlling alveolar type I cell differentiation.", "type": "Expression profiling by array", "pubmed_id": "16869965", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1363", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS782", "description": "wild type", "sample_id": [ "GSM22043", "GSM22044", "GSM22045", "GSM22046", "GSM22047", "GSM22048", "GSM22049", "GSM22050" ], "type": "genotype/variation", "id": "GDS782_1" }, { "dataset_id": "GDS782", "description": "T1alpha null", "sample_id": [ "GSM22035", "GSM22036", "GSM22037", "GSM22038", "GSM22039", "GSM22040", "GSM22041", "GSM22042" ], "type": "genotype/variation", "id": "GDS782_2" }, { "dataset_id": "GDS782", "description": "18.5 dpc", "sample_id": [ "GSM22035", "GSM22036", "GSM22037", "GSM22038", "GSM22039", "GSM22043", "GSM22044", "GSM22045", "GSM22046", "GSM22047" ], "type": "development stage", "id": "GDS782_3" }, { "dataset_id": "GDS782", "description": "birth", "sample_id": [ "GSM22040", "GSM22041", "GSM22042", "GSM22048", "GSM22049", "GSM22050" ], "type": "development stage", "id": "GDS782_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS782", "version": 1.0, "instances": "16", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS782.tab", "compression": "gz" } ], [ [ "GDS785.tab" ], { "title": "CD4+ T cell differentiation (HG-133A)", "description": "Analysis of CD4+ T cell differentiation by expression profiling of subpopulations of CD4+ cells representing 5 successive stages of differentiation: intrathymic T progenitors, double positive thymocytes, single positive thymocytes, na\u00efve T cells from cord blood, and na\u00efve T cells from adult blood.", "type": "Expression profiling by array", "pubmed_id": "15210650", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE1460", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS785", "description": "stromal", "sample_id": [ "GSM24621", "GSM24622" ], "type": "cell type", "id": "GDS785_1" }, { "dataset_id": "GDS785", "description": "CD4+", "sample_id": [ "GSM24511", "GSM24609", "GSM24610", "GSM24611", "GSM24612", "GSM24613", "GSM24614", "GSM24615", "GSM24616", "GSM24617", "GSM24618", "GSM24619", "GSM24620" ], "type": "cell type", "id": "GDS785_2" }, { "dataset_id": "GDS785", "description": "control", "sample_id": [ "GSM24621", "GSM24622" ], "type": "development stage", "id": "GDS785_3" }, { "dataset_id": "GDS785", "description": "intrathymic T progenitors", "sample_id": [ "GSM24511", "GSM24609", "GSM24610" ], "type": "development stage", "id": "GDS785_4" }, { "dataset_id": "GDS785", "description": "double positive thymocytes", "sample_id": [ "GSM24611", "GSM24612" ], "type": "development stage", "id": "GDS785_5" }, { "dataset_id": "GDS785", "description": "single positive thymocytes", "sample_id": [ "GSM24613", "GSM24614", "GSM24615" ], "type": "development stage", "id": "GDS785_6" }, { "dataset_id": "GDS785", "description": "naive T cells", "sample_id": [ "GSM24616", "GSM24617", "GSM24618", "GSM24619", "GSM24620" ], "type": "development stage", "id": "GDS785_7" }, { "dataset_id": "GDS785", "description": "fetal thymus", "sample_id": [ "GSM24511", "GSM24609", "GSM24610", "GSM24611", "GSM24612", "GSM24613", "GSM24614", "GSM24615", "GSM24621", "GSM24622" ], "type": "tissue", "id": "GDS785_8" }, { "dataset_id": "GDS785", "description": "cord blood", "sample_id": [ "GSM24616", "GSM24617" ], "type": "tissue", "id": "GDS785_9" }, { "dataset_id": "GDS785", "description": "adult blood", "sample_id": [ "GSM24618", "GSM24619", "GSM24620" ], "type": "tissue", "id": "GDS785_10" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS785", "version": 1.0, "instances": "15", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS785.tab", "compression": "gz" } ], [ [ "GDS786.tab" ], { "title": "CD4+ T cell differentiation (HG-133B)", "description": "Analysis of CD4+ T cell differentiation by expression profiling of subpopulations of CD4+ cells representing 5 successive stages of differentiation: intrathymic T progenitors, double positive thymocytes, single positive thymocytes, na\u00efve T cells from cord blood, and na\u00efve T cells from adult blood.", "type": "Expression profiling by array", "pubmed_id": "15210650", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "transformed count", "reference_series": "GSE1460", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS786", "description": "stromal", "sample_id": [ "GSM24636", "GSM24637" ], "type": "cell type", "id": "GDS786_1" }, { "dataset_id": "GDS786", "description": "CD4", "sample_id": [ "GSM24623", "GSM24624", "GSM24625", "GSM24626", "GSM24627", "GSM24628", "GSM24629", "GSM24630", "GSM24631", "GSM24632", "GSM24633", "GSM24634", "GSM24635" ], "type": "cell type", "id": "GDS786_2" }, { "dataset_id": "GDS786", "description": "control", "sample_id": [ "GSM24636", "GSM24637" ], "type": "development stage", "id": "GDS786_3" }, { "dataset_id": "GDS786", "description": "intrathymic T progenitors", "sample_id": [ "GSM24623", "GSM24624", "GSM24625" ], "type": "development stage", "id": "GDS786_4" }, { "dataset_id": "GDS786", "description": "double positive thymocytes", "sample_id": [ "GSM24626", "GSM24627" ], "type": "development stage", "id": "GDS786_5" }, { "dataset_id": "GDS786", "description": "single positive thymocytes", "sample_id": [ "GSM24628", "GSM24629", "GSM24630" ], "type": "development stage", "id": "GDS786_6" }, { "dataset_id": "GDS786", "description": "naive T cells", "sample_id": [ "GSM24631", "GSM24632", "GSM24633", "GSM24634", "GSM24635" ], "type": "development stage", "id": "GDS786_7" }, { "dataset_id": "GDS786", "description": "fetal thymus", "sample_id": [ "GSM24623", "GSM24624", "GSM24625", "GSM24626", "GSM24627", "GSM24628", "GSM24629", "GSM24630", "GSM24636", "GSM24637" ], "type": "tissue", "id": "GDS786_8" }, { "dataset_id": "GDS786", "description": "cord blood", "sample_id": [ "GSM24631", "GSM24632" ], "type": "tissue", "id": "GDS786_9" }, { "dataset_id": "GDS786", "description": "adult blood", "sample_id": [ "GSM24633", "GSM24634", "GSM24635" ], "type": "tissue", "id": "GDS786_10" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS786", "version": 1.0, "instances": "15", "variables": 16469, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS786.tab", "compression": "gz" } ], [ [ "GDS787.tab" ], { "title": "Presenilin 1 and 2 conditional double knockout effect on brain cerebral cortex", "description": "Expression profiling of brain cerebral cortex from presenilin (PS) 1 and 2 conditional double knockout (cDKO) mutant at 6 months of age. PS inactivation is restricted to the forebrain. PS1 and PS2 mutations cause familial Alzheimer's disease. Inflammatory markers upregulated in PS cDKO.", "type": "Expression profiling by array", "pubmed_id": "15345711", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1375", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS787", "description": "PS cDKO", "sample_id": [ "GSM22353" ], "type": "genotype/variation", "id": "GDS787_1" }, { "dataset_id": "GDS787", "description": "control", "sample_id": [ "GSM22351" ], "type": "genotype/variation", "id": "GDS787_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS787", "version": 1.0, "instances": "2", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS787.tab", "compression": "gz" } ], [ [ "GDS788.tab" ], { "title": "Interferon signaling in PIAS1 null mutants: time course", "description": "Expression profiling of bone marrow derived macrophages of PIAS1 null mutants treated with 500 U/ml interferon (IFN)-beta or 10 ng/ml IFN-gamma for 2 and 4 hours. IFN activates the STAT pathway, which is negatively regulated by PIAS1. Antiviral activity of IFN is enhanced in PIAS1 nulls.", "type": "Expression profiling by array", "pubmed_id": "15311277", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1552", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS788", "description": "wild type", "sample_id": [ "GSM26691", "GSM26692", "GSM26693", "GSM26694", "GSM26695" ], "type": "genotype/variation", "id": "GDS788_1" }, { "dataset_id": "GDS788", "description": "PIAS1 null", "sample_id": [ "GSM26686", "GSM26687", "GSM26688", "GSM26689", "GSM26690" ], "type": "genotype/variation", "id": "GDS788_2" }, { "dataset_id": "GDS788", "description": "untreated", "sample_id": [ "GSM26690", "GSM26695" ], "type": "agent", "id": "GDS788_3" }, { "dataset_id": "GDS788", "description": "IFN-beta", "sample_id": [ "GSM26686", "GSM26687", "GSM26691", "GSM26692" ], "type": "agent", "id": "GDS788_4" }, { "dataset_id": "GDS788", "description": "IFN-gamma", "sample_id": [ "GSM26688", "GSM26689", "GSM26693", "GSM26694" ], "type": "agent", "id": "GDS788_5" }, { "dataset_id": "GDS788", "description": "0 h", "sample_id": [ "GSM26690", "GSM26695" ], "type": "time", "id": "GDS788_6" }, { "dataset_id": "GDS788", "description": "2 h", "sample_id": [ "GSM26686", "GSM26688", "GSM26691", "GSM26693" ], "type": "time", "id": "GDS788_7" }, { "dataset_id": "GDS788", "description": "4 h", "sample_id": [ "GSM26687", "GSM26689", "GSM26692", "GSM26694" ], "type": "time", "id": "GDS788_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS788", "version": 1.0, "instances": "10", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS788.tab", "compression": "gz" } ], [ [ "GDS790.tab" ], { "title": "Keratinocyte differentiation promoted by Notch1 signaling", "description": "Comparison of gene expression in keratinocytes from embryos at 15.5 days of gestation to that from 2 day newborns infected with an adenovirus expressing a constitutively activate Notch1. Results indicate that Notch1 promotes differentiation in part through caspase 3.", "type": "Expression profiling by array", "pubmed_id": "15068794", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1569", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS790", "description": "E15.5", "sample_id": [ "GSM26985" ], "type": "development stage", "id": "GDS790_1" }, { "dataset_id": "GDS790", "description": "newborn", "sample_id": [ "GSM26986", "GSM26987", "GSM26988" ], "type": "development stage", "id": "GDS790_2" }, { "dataset_id": "GDS790", "description": "none", "sample_id": [ "GSM26985", "GSM26986" ], "type": "infection", "id": "GDS790_3" }, { "dataset_id": "GDS790", "description": "GFP", "sample_id": [ "GSM26988" ], "type": "infection", "id": "GDS790_4" }, { "dataset_id": "GDS790", "description": "activated Notch1", "sample_id": [ "GSM26987" ], "type": "infection", "id": "GDS790_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS790", "version": 1.0, "instances": "4", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS790.tab", "compression": "gz" } ], [ [ "GDS791.tab" ], { "title": "Estrogen receptor beta knockout effect on skeletal muscle", "description": "Comparison of expression profiles of soleus muscles from 5 to 6 month old C57BL/6 males to those of estrogen receptor beta (ERbeta) knockout male littermates. Male ERbeta knockout muscles are more resistant to fatigue than male wild type muscles.", "type": "Expression profiling by array", "pubmed_id": "15280152", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1050", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS791", "description": "wild type", "sample_id": [ "GSM16989", "GSM16990", "GSM16991" ], "type": "genotype/variation", "id": "GDS791_1" }, { "dataset_id": "GDS791", "description": "estrogen receptor beta knockout", "sample_id": [ "GSM16992", "GSM16993", "GSM16994" ], "type": "genotype/variation", "id": "GDS791_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS791", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS791.tab", "compression": "gz" } ], [ [ "GDS794.tab" ], { "title": "Cardiac hypertrophy progression: time course", "description": "Expression profiling of hearts from FVB males subjected to cardiac pressure overload by transverse aortic constriction (TAC). TAC performed on 3 month old males. Hearts examined 2, 10, and 21 days after surgery. Results provide insight into the progression of cardiac hypertrophy.", "type": "Expression profiling by array", "pubmed_id": "15292486", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "26", "value_type": "count", "reference_series": "GSE1621", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS794", "description": "control", "sample_id": [ "GSM27631", "GSM27632", "GSM27633", "GSM27634", "GSM27639", "GSM27640", "GSM27641", "GSM27642", "GSM27648", "GSM27649", "GSM27650", "GSM27651" ], "type": "protocol", "id": "GDS794_1" }, { "dataset_id": "GDS794", "description": "transverse aortic constriction", "sample_id": [ "GSM27635", "GSM27636", "GSM27637", "GSM27638", "GSM27643", "GSM27645", "GSM27646", "GSM27647", "GSM27652", "GSM27653", "GSM27654", "GSM27655", "GSM27656", "GSM27657" ], "type": "protocol", "id": "GDS794_2" }, { "dataset_id": "GDS794", "description": "2 d", "sample_id": [ "GSM27648", "GSM27649", "GSM27650", "GSM27651", "GSM27652", "GSM27653", "GSM27654", "GSM27655", "GSM27656" ], "type": "time", "id": "GDS794_3" }, { "dataset_id": "GDS794", "description": "10 d", "sample_id": [ "GSM27639", "GSM27640", "GSM27641", "GSM27642", "GSM27643", "GSM27645", "GSM27646", "GSM27647" ], "type": "time", "id": "GDS794_4" }, { "dataset_id": "GDS794", "description": "21 d", "sample_id": [ "GSM27631", "GSM27632", "GSM27633", "GSM27634", "GSM27635", "GSM27636", "GSM27637", "GSM27638", "GSM27657" ], "type": "time", "id": "GDS794_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS794", "version": 1.0, "instances": "26", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS794.tab", "compression": "gz" } ], [ [ "GDS799.tab" ], { "title": "Smooth muscle cell differentiation induced by retinoic acid: time course", "description": "Expression profiling of A404 cells at 48 and 96 hours following 1 umol/L all trans-retinoic acid (RA) treatment to induce differentiation into smooth muscle cells (SMCs). A set of cells treated with RA for 96 hours was subsequently treated with 0.5 ug/ml puromycin to enrich for SMCs.", "type": "Expression profiling by array", "pubmed_id": "15340120", "platform": "GPL1307", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "21446", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "23", "value_type": "log ratio", "reference_series": "GSE1506", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS799", "description": "0 h", "sample_id": [ "GSM25978", "GSM25979", "GSM26006", "GSM26007", "GSM26008", "GSM26009" ], "type": "time", "id": "GDS799_1" }, { "dataset_id": "GDS799", "description": "48 h", "sample_id": [ "GSM26010", "GSM26011", "GSM26012", "GSM26013", "GSM26014" ], "type": "time", "id": "GDS799_2" }, { "dataset_id": "GDS799", "description": "96 h", "sample_id": [ "GSM26015", "GSM26016", "GSM26017", "GSM26018", "GSM26019", "GSM26020", "GSM26021", "GSM26022", "GSM26023", "GSM26024", "GSM26025", "GSM26026" ], "type": "time", "id": "GDS799_3" }, { "dataset_id": "GDS799", "description": "control", "sample_id": [ "GSM25978", "GSM25979", "GSM26006", "GSM26007", "GSM26008", "GSM26009" ], "type": "agent", "id": "GDS799_4" }, { "dataset_id": "GDS799", "description": "retinoic acid", "sample_id": [ "GSM26010", "GSM26011", "GSM26012", "GSM26013", "GSM26014", "GSM26015", "GSM26016", "GSM26017", "GSM26018", "GSM26019", "GSM26020", "GSM26021", "GSM26022", "GSM26023", "GSM26024", "GSM26025", "GSM26026" ], "type": "agent", "id": "GDS799_5" }, { "dataset_id": "GDS799", "description": "no selection", "sample_id": [ "GSM25978", "GSM25979", "GSM26006", "GSM26007", "GSM26008", "GSM26009", "GSM26010", "GSM26011", "GSM26012", "GSM26013", "GSM26014", "GSM26015", "GSM26016", "GSM26017", "GSM26018", "GSM26019", "GSM26020" ], "type": "growth protocol", "id": "GDS799_6" }, { "dataset_id": "GDS799", "description": "puromycin resistance", "sample_id": [ "GSM26021", "GSM26022", "GSM26023", "GSM26024", "GSM26025", "GSM26026" ], "type": "growth protocol", "id": "GDS799_7" } ], "taxid": "10090", "genes": 17738, "aggregation_function": "mean", "name": "GDS799", "version": 1.0, "instances": "23", "variables": 17742, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS799.tab", "compression": "gz" } ], [ [ "GDS80.tab" ], { "title": "Macrophages infected with Salmonella (SHS)(I)", "description": "Identification of host pathways affected by the Salmonella virulence transcription factor phoP. phoP found to play a role in Salmonella-induced human macrophage cell death.", "type": "Expression profiling by array", "pubmed_id": "11320214", "platform": "GPL181", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "24192", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE503", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS80", "description": "mock", "sample_id": [ "GSM1804", "GSM1806", "GSM1810", "GSM1812" ], "type": "infection", "id": "GDS80_1" }, { "dataset_id": "GDS80", "description": "wildtype", "sample_id": [ "GSM1805", "GSM1807", "GSM1811", "GSM1813", "GSM1818", "GSM1819" ], "type": "infection", "id": "GDS80_2" }, { "dataset_id": "GDS80", "description": "0.5 hour", "sample_id": [ "GSM1804", "GSM1810", "GSM1805", "GSM1811" ], "type": "time", "id": "GDS80_3" }, { "dataset_id": "GDS80", "description": "1 hour", "sample_id": [ "GSM1812", "GSM1813", "GSM1818" ], "type": "time", "id": "GDS80_4" }, { "dataset_id": "GDS80", "description": "2 hour", "sample_id": [ "GSM1819" ], "type": "time", "id": "GDS80_5" }, { "dataset_id": "GDS80", "description": "4 hour", "sample_id": [ "GSM1806", "GSM1807" ], "type": "time", "id": "GDS80_6" } ], "taxid": "9606", "genes": 20636, "aggregation_function": "mean", "name": "GDS80", "version": 1.0, "instances": "10", "variables": 20639, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS80.tab", "compression": "gz" } ], [ [ "GDS806.tab" ], { "title": "Estrogen positive breast cancer recurrence during tamoxifen therapy: whole tissue tumor", "description": "Expression profiling of estrogen positive primary breast cancer tumors from 60 patients. Patients subsequently treated with tamoxifen for 5 years, and tumors classified according to whether cancer recurred. Results identify gene markers of disease-free survival that include HOXB13 and IL17BR.", "type": "Expression profiling by array", "pubmed_id": "15193263", "platform": "GPL1223", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "60", "value_type": "log ratio", "reference_series": "GSE1379", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS806", "description": "disease-free", "sample_id": [ "GSM22453", "GSM22458", "GSM22465", "GSM22466", "GSM22468", "GSM22469", "GSM22471", "GSM22472", "GSM22474", "GSM22476", "GSM22477", "GSM22478", "GSM22481", "GSM22484", "GSM22485", "GSM22487", "GSM22488", "GSM22489", "GSM22490", "GSM22492", "GSM22493", "GSM22494", "GSM22497", "GSM22498", "GSM22501", "GSM22502", "GSM22503", "GSM22504", "GSM22505", "GSM22506", "GSM22507", "GSM22508" ], "type": "disease state", "id": "GDS806_1" }, { "dataset_id": "GDS806", "description": "cancer recurred", "sample_id": [ "GSM22449", "GSM22450", "GSM22451", "GSM22452", "GSM22454", "GSM22455", "GSM22456", "GSM22457", "GSM22459", "GSM22460", "GSM22461", "GSM22462", "GSM22463", "GSM22464", "GSM22467", "GSM22470", "GSM22473", "GSM22475", "GSM22479", "GSM22480", "GSM22482", "GSM22483", "GSM22486", "GSM22491", "GSM22495", "GSM22496", "GSM22499", "GSM22500" ], "type": "disease state", "id": "GDS806_2" } ], "taxid": "9606", "genes": 20338, "aggregation_function": "mean", "name": "GDS806", "version": 1.0, "instances": "60", "variables": 20340, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS806.tab", "compression": "gz" } ], [ [ "GDS807.tab" ], { "title": "Estrogen positive breast cancer recurrence during tamoxifen therapy: microdissected tumor", "description": "Expression profiling of microdissected estrogen positive primary breast cancer tumors from 60 patients. Patients later treated with tamoxifen for 5 years, and tumors grouped according to whether cancer recurred. Results identify markers of disease-free survival that include HOXB13 and IL17BR.", "type": "Expression profiling by array", "pubmed_id": [ "15193263", "18498629" ], "platform": "GPL1223", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "60", "value_type": "log ratio", "reference_series": "GSE1378", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS807", "description": "disease-free", "sample_id": [ "GSM22369", "GSM22374", "GSM22381", "GSM22382", "GSM22384", "GSM22385", "GSM22387", "GSM22388", "GSM22390", "GSM22392", "GSM22393", "GSM22394", "GSM22397", "GSM22400", "GSM22401", "GSM22403", "GSM22404", "GSM22405", "GSM22406", "GSM22408", "GSM22409", "GSM22410", "GSM22413", "GSM22414", "GSM22417", "GSM22418", "GSM22419", "GSM22420", "GSM22421", "GSM22422", "GSM22423", "GSM22424" ], "type": "disease state", "id": "GDS807_1" }, { "dataset_id": "GDS807", "description": "cancer recurred", "sample_id": [ "GSM22365", "GSM22366", "GSM22367", "GSM22368", "GSM22370", "GSM22371", "GSM22372", "GSM22373", "GSM22375", "GSM22376", "GSM22377", "GSM22378", "GSM22379", "GSM22380", "GSM22383", "GSM22386", "GSM22389", "GSM22391", "GSM22395", "GSM22396", "GSM22398", "GSM22399", "GSM22402", "GSM22407", "GSM22411", "GSM22412", "GSM22415", "GSM22416" ], "type": "disease state", "id": "GDS807_2" } ], "taxid": "9606", "genes": 20338, "aggregation_function": "mean", "name": "GDS807", "version": 1.0, "instances": "60", "variables": 20340, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS807.tab", "compression": "gz" } ], [ [ "GDS808.tab" ], { "title": "Heart ischemia protection: comparison of pharmacologic and ischemic preconditioning", "description": "Comparison of Wistar heart left ventricles preconditioned against ischemia by pharmacologic treatment with isoflurane to those preconditioned by exposure to sublethal ischemia. Expression profiles examined in preconditioned hearts either perfused alone or subjected to ischemia and then reperfused.", "type": "Expression profiling by array", "pubmed_id": "15494475", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1616", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS808", "description": "non-preconditioned", "sample_id": [ "GSM27494", "GSM27495", "GSM27496", "GSM27497", "GSM27498", "GSM27509", "GSM27510", "GSM27511", "GSM27512", "GSM27513" ], "type": "agent", "id": "GDS808_1" }, { "dataset_id": "GDS808", "description": "isoflurane preconditioned", "sample_id": [ "GSM27484", "GSM27485", "GSM27486", "GSM27487", "GSM27488", "GSM27489", "GSM27490", "GSM27491", "GSM27492", "GSM27493" ], "type": "agent", "id": "GDS808_2" }, { "dataset_id": "GDS808", "description": "ischemic preconditioned", "sample_id": [ "GSM27499", "GSM27500", "GSM27501", "GSM27502", "GSM27503", "GSM27504", "GSM27505", "GSM27506", "GSM27507", "GSM27508" ], "type": "agent", "id": "GDS808_3" }, { "dataset_id": "GDS808", "description": "perfusion only", "sample_id": [ "GSM27489", "GSM27490", "GSM27491", "GSM27492", "GSM27493", "GSM27494", "GSM27495", "GSM27496", "GSM27497", "GSM27498", "GSM27504", "GSM27505", "GSM27506", "GSM27507", "GSM27508" ], "type": "protocol", "id": "GDS808_4" }, { "dataset_id": "GDS808", "description": "ischemia followed by reperfusion", "sample_id": [ "GSM27484", "GSM27485", "GSM27486", "GSM27487", "GSM27488", "GSM27499", "GSM27500", "GSM27501", "GSM27502", "GSM27503", "GSM27509", "GSM27510", "GSM27511", "GSM27512", "GSM27513" ], "type": "protocol", "id": "GDS808_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS808", "version": 1.0, "instances": "30", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS808.tab", "compression": "gz" } ], [ [ "GDS809.tab" ], { "title": "Alpha-secretase cleaved amyloid precursor protein effect on hippocampus", "description": "Expression profiling of hippocampal slice cultures treated with 1 nM alpha-secretase cleaved amyloid precursor protein (sAPPalpha) for 24 hours. Hippocampi obtained from 15 day postnatal C57B6/SJL males. Results provide insight into the neuroprotective activity of sAPPalpha.", "type": "Expression profiling by array", "pubmed_id": "15342738", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1555", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS809", "description": "control", "sample_id": [ "GSM26700", "GSM26701", "GSM26702" ], "type": "agent", "id": "GDS809_1" }, { "dataset_id": "GDS809", "description": "sAPPalpha", "sample_id": [ "GSM26703", "GSM26704", "GSM26705" ], "type": "agent", "id": "GDS809_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS809", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS809.tab", "compression": "gz" } ], [ [ "GDS810.tab" ], { "title": "Alzheimer's disease at various stages of severity", "description": "Expression profiling of brain hippocampi from 22 postmortem subjects with Alzheimer's disease (AD) at various stages of severity. 7, 8, and 7 subjects diagnosed with incipient, moderate, and severe AD respectively. Results provide insight into mechanisms underlying the early pathogenesis of AD.", "type": "Expression profiling by array", "pubmed_id": "14769913", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE1297", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS810", "description": "control", "sample_id": [ "GSM21215", "GSM21217", "GSM21218", "GSM21219", "GSM21220", "GSM21221", "GSM21226", "GSM21231", "GSM21232" ], "type": "disease state", "id": "GDS810_1" }, { "dataset_id": "GDS810", "description": "incipient AD", "sample_id": [ "GSM21204", "GSM21205", "GSM21216", "GSM21222", "GSM21225", "GSM21228", "GSM21233" ], "type": "disease state", "id": "GDS810_2" }, { "dataset_id": "GDS810", "description": "moderate AD", "sample_id": [ "GSM21209", "GSM21210", "GSM21211", "GSM21214", "GSM21223", "GSM21224", "GSM21227", "GSM21230" ], "type": "disease state", "id": "GDS810_3" }, { "dataset_id": "GDS810", "description": "severe AD", "sample_id": [ "GSM21203", "GSM21206", "GSM21207", "GSM21208", "GSM21212", "GSM21213", "GSM21229" ], "type": "disease state", "id": "GDS810_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS810", "version": 1.0, "instances": "31", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS810.tab", "compression": "gz" } ], [ [ "GDS811.tab" ], { "title": "Amyloid precursor protein mutant overexpression in strain resistant to neuronal cell loss", "description": "Expression profiling of brain left hippocampi from 12 month old Tg2576 transgenics overexpressing the amyloid precursor protein with the Swedish mutation (APPSw). APPSw linked to the early-onset Alzheimer's disease. Tg2576 express neuroprotective genes that prevent neuronal cell loss.", "type": "Expression profiling by array", "pubmed_id": "15342738", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1556", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS811", "description": "control", "sample_id": [ "GSM26706", "GSM26707" ], "type": "strain", "id": "GDS811_1" }, { "dataset_id": "GDS811", "description": "APPSw transgenic", "sample_id": [ "GSM26708", "GSM26709" ], "type": "strain", "id": "GDS811_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS811", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS811.tab", "compression": "gz" } ], [ [ "GDS812.tab" ], { "title": "Preimplantation embryo development (MG-U74A)", "description": "Expression profiling of CF-1 x B6D2F1/J preimplantation embryos. Oocytes and embryos at the 1-cell, 2-cell, 8-cell, and blastocyst stages examined. Results provide insight into mechanisms underlying the major transitions in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15282163", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "17", "value_type": "count", "reference_series": "GSE1749", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS812", "description": "oocyte", "sample_id": [ "GSM22541", "GSM22542", "GSM22543", "GSM22544" ], "type": "development stage", "id": "GDS812_1" }, { "dataset_id": "GDS812", "description": "1-cell", "sample_id": [ "GSM22545", "GSM22546", "GSM22547" ], "type": "development stage", "id": "GDS812_2" }, { "dataset_id": "GDS812", "description": "2-cell", "sample_id": [ "GSM22548", "GSM22549", "GSM22550" ], "type": "development stage", "id": "GDS812_3" }, { "dataset_id": "GDS812", "description": "8-cell", "sample_id": [ "GSM22551", "GSM22552", "GSM22553", "GSM22554" ], "type": "development stage", "id": "GDS812_4" }, { "dataset_id": "GDS812", "description": "blastocyst", "sample_id": [ "GSM22555", "GSM22556", "GSM22557" ], "type": "development stage", "id": "GDS812_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS812", "version": 1.0, "instances": "17", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS812.tab", "compression": "gz" } ], [ [ "GDS813.tab" ], { "title": "Preimplantation embryo development (MOE430A)", "description": "Expression profiling of CF-1 x B6D2F1/J preimplantation embryos. Oocytes and embryos at the 1-cell, 2-cell, 8-cell, and blastocyst stages examined. Results provide insight into mechanisms underlying the major transitions in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15282163", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1749", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS813", "description": "oocyte", "sample_id": [ "GSM22649", "GSM22650", "GSM22651", "GSM22652" ], "type": "development stage", "id": "GDS813_1" }, { "dataset_id": "GDS813", "description": "1-cell", "sample_id": [ "GSM22653", "GSM22654", "GSM22655", "GSM22656" ], "type": "development stage", "id": "GDS813_2" }, { "dataset_id": "GDS813", "description": "2-cell", "sample_id": [ "GSM22657", "GSM22658", "GSM22659", "GSM22660" ], "type": "development stage", "id": "GDS813_3" }, { "dataset_id": "GDS813", "description": "8-cell", "sample_id": [ "GSM22661", "GSM22662", "GSM22663", "GSM22664" ], "type": "development stage", "id": "GDS813_4" }, { "dataset_id": "GDS813", "description": "blastocyst", "sample_id": [ "GSM22665", "GSM22666", "GSM22667", "GSM22668" ], "type": "development stage", "id": "GDS813_5" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS813", "version": 1.0, "instances": "20", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS813.tab", "compression": "gz" } ], [ [ "GDS814.tab" ], { "title": "Preimplantation embryo development (MOE430B)", "description": "Expression profiling of CF-1 x B6D2F1/J preimplantation embryos. Oocytes and embryos at the 1-cell, 2-cell, 8-cell, and blastocyst stages examined. Results provide insight into mechanisms underlying the major transitions in preimplantation development.", "type": "Expression profiling by array", "pubmed_id": "15282163", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1749", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS814", "description": "oocyte", "sample_id": [ "GSM22669", "GSM22670", "GSM22671", "GSM22672" ], "type": "development stage", "id": "GDS814_1" }, { "dataset_id": "GDS814", "description": "1-cell", "sample_id": [ "GSM22673", "GSM22674", "GSM22675", "GSM22676" ], "type": "development stage", "id": "GDS814_2" }, { "dataset_id": "GDS814", "description": "2-cell", "sample_id": [ "GSM22677", "GSM22678", "GSM22679", "GSM22680" ], "type": "development stage", "id": "GDS814_3" }, { "dataset_id": "GDS814", "description": "8-cell", "sample_id": [ "GSM22695", "GSM22696", "GSM22697", "GSM22698" ], "type": "development stage", "id": "GDS814_4" }, { "dataset_id": "GDS814", "description": "blastocyst", "sample_id": [ "GSM22699", "GSM22700", "GSM22701", "GSM22702" ], "type": "development stage", "id": "GDS814_5" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS814", "version": 1.0, "instances": "20", "variables": 16841, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS814.tab", "compression": "gz" } ], [ [ "GDS817.tab" ], { "title": "Breast cancer cell expression profiles (HG-U95A)", "description": "Expression profiling of breast cancer cell lines HCC 1954 and MDA-MB-436 in reference to mammary epithelial cells. Results used to validate a method of comparing data generated from Affymetrix arrays to that from cDNA arrays. The method uses DNA sequence to match probes between platforms.", "type": "Expression profiling by array", "pubmed_id": "15161944", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1299", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS817", "description": "normal", "sample_id": [ "GSM21240", "GSM21241" ], "type": "disease state", "id": "GDS817_1" }, { "dataset_id": "GDS817", "description": "cancer", "sample_id": [ "GSM21236", "GSM21237", "GSM21238", "GSM21239" ], "type": "disease state", "id": "GDS817_2" }, { "dataset_id": "GDS817", "description": "mammary epithelium", "sample_id": [ "GSM21240", "GSM21241" ], "type": "cell line", "id": "GDS817_3" }, { "dataset_id": "GDS817", "description": "MDA-MB-436", "sample_id": [ "GSM21236", "GSM21237" ], "type": "cell line", "id": "GDS817_4" }, { "dataset_id": "GDS817", "description": "HCC 1954", "sample_id": [ "GSM21238", "GSM21239" ], "type": "cell line", "id": "GDS817_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS817", "version": 1.0, "instances": "6", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS817.tab", "compression": "gz" } ], [ [ "GDS820.tab" ], { "title": "Breast cancer cell expression profiles (HG-U133A)", "description": "Expression profiling of breast cancer cell lines HCC 1954 and MDA-MB-436 in reference to mammary epithelial cells. Results used to validate a method of comparing data generated from Affymetrix arrays to that from cDNA arrays. The method uses DNA sequence to match probes between platforms.", "type": "Expression profiling by array", "pubmed_id": "15161944", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1299", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS820", "description": "normal", "sample_id": [ "GSM21246", "GSM21247" ], "type": "disease state", "id": "GDS820_1" }, { "dataset_id": "GDS820", "description": "cancer", "sample_id": [ "GSM21242", "GSM21243", "GSM21244", "GSM21245" ], "type": "disease state", "id": "GDS820_2" }, { "dataset_id": "GDS820", "description": "mammary epithelium", "sample_id": [ "GSM21246", "GSM21247" ], "type": "cell line", "id": "GDS820_3" }, { "dataset_id": "GDS820", "description": "MDA-MB-436", "sample_id": [ "GSM21242", "GSM21243" ], "type": "cell line", "id": "GDS820_4" }, { "dataset_id": "GDS820", "description": "HCC 1954", "sample_id": [ "GSM21244", "GSM21245" ], "type": "cell line", "id": "GDS820_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS820", "version": 1.0, "instances": "6", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS820.tab", "compression": "gz" } ], [ [ "GDS823.tab" ], { "title": "Breast cancer cell expression profiles (HG-U133B)", "description": "Expression profiling of breast cancer cell lines HCC 1954 and MDA-MB-436 in reference to mammary epithelial cells. Results used to validate a method of comparing data generated from Affymetrix arrays to that from cDNA arrays. The method uses DNA sequence to match probes between platforms.", "type": "Expression profiling by array", "pubmed_id": "15161944", "platform": "GPL97", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22645", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1299", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS823", "description": "normal", "sample_id": [ "GSM21252", "GSM21253" ], "type": "disease state", "id": "GDS823_1" }, { "dataset_id": "GDS823", "description": "cancer", "sample_id": [ "GSM21248", "GSM21249", "GSM21250", "GSM21251" ], "type": "disease state", "id": "GDS823_2" }, { "dataset_id": "GDS823", "description": "MDA-MB-436", "sample_id": [ "GSM21248", "GSM21249" ], "type": "cell line", "id": "GDS823_3" }, { "dataset_id": "GDS823", "description": "HCC 1954", "sample_id": [ "GSM21250", "GSM21251" ], "type": "cell line", "id": "GDS823_4" }, { "dataset_id": "GDS823", "description": "mammary epithelium", "sample_id": [ "GSM21252", "GSM21253" ], "type": "cell line", "id": "GDS823_5" } ], "taxid": "9606", "genes": 16465, "aggregation_function": "mean", "name": "GDS823", "version": 1.0, "instances": "6", "variables": 16468, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS823.tab", "compression": "gz" } ], [ [ "GDS825.tab" ], { "title": "Breast cancer cell expression profiles (G4100A)", "description": "Expression profiling of breast cancer cell lines HCC 1954 and MDA-MB-436 in reference to mammary epithelial cells. Results used to validate a method of comparing data generated from cDNA arrays to that from Affymetrix arrays. The method uses DNA sequence to match probes between platforms.", "type": "Expression profiling by array", "pubmed_id": "15161944", "platform": "GPL875", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "18564", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE1299", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS825", "description": "MDA-MB-436", "sample_id": [ "GSM21254", "GSM21255" ], "type": "cell line", "id": "GDS825_1" }, { "dataset_id": "GDS825", "description": "HCC 1954", "sample_id": [ "GSM21256", "GSM21257" ], "type": "cell line", "id": "GDS825_2" } ], "taxid": "9606", "genes": 10908, "aggregation_function": "mean", "name": "GDS825", "version": 1.0, "instances": "4", "variables": 10910, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS825.tab", "compression": "gz" } ], [ [ "GDS826.tab" ], { "title": "Erythroid differentiation of erythroleukemia cell line induced by hemin: time course", "description": "Expression profiling of K562 erythroleukemia cells induced to differentiate into erythroid-like cells by hemin. K562 cells examined at various time points up to 72 hours following treatment with 50 uM hemin. Results provide insight into mechanisms underlying hemoglobinization.", "type": "Expression profiling by array", "pubmed_id": "15252187", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1036", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS826", "description": "0 h", "sample_id": [ "GSM16523", "GSM16524" ], "type": "time", "id": "GDS826_1" }, { "dataset_id": "GDS826", "description": "6 h", "sample_id": [ "GSM16525", "GSM16526" ], "type": "time", "id": "GDS826_2" }, { "dataset_id": "GDS826", "description": "12 h", "sample_id": [ "GSM16527", "GSM16528" ], "type": "time", "id": "GDS826_3" }, { "dataset_id": "GDS826", "description": "24 h", "sample_id": [ "GSM16529", "GSM16531" ], "type": "time", "id": "GDS826_4" }, { "dataset_id": "GDS826", "description": "48 h", "sample_id": [ "GSM16532", "GSM16533" ], "type": "time", "id": "GDS826_5" }, { "dataset_id": "GDS826", "description": "72 h", "sample_id": [ "GSM16535", "GSM16536" ], "type": "time", "id": "GDS826_6" }, { "dataset_id": "GDS826", "description": "untreated", "sample_id": [ "GSM16523", "GSM16524" ], "type": "agent", "id": "GDS826_7" }, { "dataset_id": "GDS826", "description": "hemin", "sample_id": [ "GSM16525", "GSM16526", "GSM16527", "GSM16528", "GSM16529", "GSM16531", "GSM16532", "GSM16533", "GSM16535", "GSM16536" ], "type": "agent", "id": "GDS826_8" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS826", "version": 1.0, "instances": "12", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS826.tab", "compression": "gz" } ], [ [ "GDS827.tab" ], { "title": "Acute ethanol administration effect on Toll-like receptor 3 signaling in macrophages", "description": "Analysis of peritoneal macrophages from 8 to12 week-old C57BL/6xC3H females treated with 100 ug poly(I:C) and 6 g/kg ethanol. Poly(I:C) mimics viral dsRNA by binding Toll-like receptor 3. Results provide insight into the suppression of innate immunity by ethanol.", "type": "Expression profiling by array", "pubmed_id": "15294990", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "5", "value_type": "count", "reference_series": "GSE1308", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS827", "description": "untreated", "sample_id": [ "GSM21605" ], "type": "agent", "id": "GDS827_1" }, { "dataset_id": "GDS827", "description": "poly IC", "sample_id": [ "GSM21606", "GSM21607" ], "type": "agent", "id": "GDS827_2" }, { "dataset_id": "GDS827", "description": "ethanol and poly IC", "sample_id": [ "GSM21608", "GSM21609" ], "type": "agent", "id": "GDS827_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS827", "version": 1.0, "instances": "5", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS827.tab", "compression": "gz" } ], [ [ "GDS828.tab" ], { "title": "Insulitis: comparison of innocuous and destructive forms", "description": "Analysis of CD4+ automimmune T and CD45+ hematopoeitic cells from non-obese diabetic (NOD) and C57BL/6-H-2 g7 transgenics with the BDC2.5 T cell receptor (TCR) from a diabetogenic T cell. BDC2.5 TCR in NOD and in C57BL/6-H-2 g7 results in innocuous and destructive insulitis respectively.", "type": "Expression profiling by array", "pubmed_id": "15141080", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1085", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS828", "description": "NOD", "sample_id": [ "GSM17122", "GSM17123", "GSM17124", "GSM17125", "GSM17126", "GSM17127", "GSM17128", "GSM17129", "GSM17211", "GSM17212", "GSM17213", "GSM17214", "GSM17215" ], "type": "strain", "id": "GDS828_1" }, { "dataset_id": "GDS828", "description": "B6.H-2 g7", "sample_id": [ "GSM17036", "GSM17037", "GSM17038", "GSM17114", "GSM17115", "GSM17116", "GSM17117", "GSM17118", "GSM17119", "GSM17120", "GSM17121" ], "type": "strain", "id": "GDS828_2" }, { "dataset_id": "GDS828", "description": "spleen", "sample_id": [ "GSM17116", "GSM17117", "GSM17120", "GSM17121", "GSM17128", "GSM17129", "GSM17214", "GSM17215" ], "type": "tissue", "id": "GDS828_3" }, { "dataset_id": "GDS828", "description": "lymph node", "sample_id": [ "GSM17114", "GSM17115", "GSM17125", "GSM17126", "GSM17127" ], "type": "tissue", "id": "GDS828_4" }, { "dataset_id": "GDS828", "description": "pancreas", "sample_id": [ "GSM17036", "GSM17037", "GSM17038", "GSM17118", "GSM17119", "GSM17122", "GSM17123", "GSM17124", "GSM17211", "GSM17212", "GSM17213" ], "type": "tissue", "id": "GDS828_5" }, { "dataset_id": "GDS828", "description": "wild type T cell receptor", "sample_id": [ "GSM17116", "GSM17120", "GSM17121", "GSM17128", "GSM17129", "GSM17214", "GSM17215" ], "type": "genotype/variation", "id": "GDS828_6" }, { "dataset_id": "GDS828", "description": "diabetogenic T cell receptor", "sample_id": [ "GSM17036", "GSM17037", "GSM17038", "GSM17114", "GSM17115", "GSM17117", "GSM17118", "GSM17119", "GSM17122", "GSM17123", "GSM17124", "GSM17125", "GSM17126", "GSM17127", "GSM17211", "GSM17212", "GSM17213" ], "type": "genotype/variation", "id": "GDS828_7" }, { "dataset_id": "GDS828", "description": "natural killer", "sample_id": [ "GSM17116", "GSM17117", "GSM17128", "GSM17129" ], "type": "cell type", "id": "GDS828_8" }, { "dataset_id": "GDS828", "description": "CD45", "sample_id": [ "GSM17036", "GSM17037", "GSM17038", "GSM17120", "GSM17121", "GSM17122", "GSM17123", "GSM17124", "GSM17214", "GSM17215" ], "type": "cell type", "id": "GDS828_9" }, { "dataset_id": "GDS828", "description": "CD4", "sample_id": [ "GSM17114", "GSM17115", "GSM17118", "GSM17119", "GSM17125", "GSM17126", "GSM17127", "GSM17211", "GSM17212", "GSM17213" ], "type": "cell type", "id": "GDS828_10" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS828", "version": 1.0, "instances": "24", "variables": 9566, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS828.tab", "compression": "gz" } ], [ [ "GDS829.tab" ], { "title": "Alternative pre-mRNA splicing in various tissues and cell lines (Rosetta/Merck Splicing Chip 1)", "description": "Monitoring of mRNA splice variants for more than 10,000 multi-exon genes using arrays with oligonucleotide probes positioned at exon-exon junctions. mRNA from 52 tissues and cell lines examined. Results provide tissue distribution of splice variants and identify novel splice variants.", "type": "Expression profiling by array", "pubmed_id": "14684825", "platform": "GPL543", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "23107", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "54", "value_type": "count", "reference_series": "GSE740", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS829", "description": "adrenal cortex", "sample_id": [ "GSM28710" ], "type": "tissue", "id": "GDS829_1" }, { "dataset_id": "GDS829", "description": "adrenal medulla", "sample_id": [ "GSM28711" ], "type": "tissue", "id": "GDS829_2" }, { "dataset_id": "GDS829", "description": "bladder", "sample_id": [ "GSM28712" ], "type": "tissue", "id": "GDS829_3" }, { "dataset_id": "GDS829", "description": "bone marrow", "sample_id": [ "GSM11222" ], "type": "tissue", "id": "GDS829_4" }, { "dataset_id": "GDS829", "description": "brain", "sample_id": [ "GSM28720" ], "type": "tissue", "id": "GDS829_5" }, { "dataset_id": "GDS829", "description": "amygdala", "sample_id": [ "GSM11217" ], "type": "tissue", "id": "GDS829_6" }, { "dataset_id": "GDS829", "description": "brain fetal", "sample_id": [ "GSM28723" ], "type": "tissue", "id": "GDS829_7" }, { "dataset_id": "GDS829", "description": "caudate nucleus", "sample_id": [ "GSM11241" ], "type": "tissue", "id": "GDS829_8" }, { "dataset_id": "GDS829", "description": "cerebellum", "sample_id": [ "GSM28703" ], "type": "tissue", "id": "GDS829_9" }, { "dataset_id": "GDS829", "description": "cerebral cortex", "sample_id": [ "GSM11227" ], "type": "tissue", "id": "GDS829_10" }, { "dataset_id": "GDS829", "description": "corpus callosum", "sample_id": [ "GSM28706" ], "type": "tissue", "id": "GDS829_11" }, { "dataset_id": "GDS829", "description": "hippocampus", "sample_id": [ "GSM11229" ], "type": "tissue", "id": "GDS829_12" 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"sample_id": [ "GSM28824" ], "type": "tissue", "id": "GDS833_28" }, { "dataset_id": "GDS833", "description": "liver fetal", "sample_id": [ "GSM28813" ], "type": "tissue", "id": "GDS833_29" }, { "dataset_id": "GDS833", "description": "lung", "sample_id": [ "GSM28827" ], "type": "tissue", "id": "GDS833_30" }, { "dataset_id": "GDS833", "description": "lung fetal", "sample_id": [ "GSM11337" ], "type": "tissue", "id": "GDS833_31" }, { "dataset_id": "GDS833", "description": "lung carcinoma A549", "sample_id": [ "GSM28814" ], "type": "tissue", "id": "GDS833_32" }, { "dataset_id": "GDS833", "description": "lymph node", "sample_id": [ "GSM11331" ], "type": "tissue", "id": "GDS833_33" }, { "dataset_id": "GDS833", "description": "lymphoma Burkitts Daudi", "sample_id": [ "GSM11344" ], "type": "tissue", "id": "GDS833_34" }, { "dataset_id": "GDS833", "description": "lymphoma Burkitts Raji", "sample_id": [ "GSM11330" ], "type": "tissue", "id": "GDS833_35" }, { "dataset_id": "GDS833", "description": "melanoma G361", "sample_id": [ "GSM11325" ], "type": "tissue", "id": "GDS833_36" }, { "dataset_id": "GDS833", "description": "mislabeled", "sample_id": [ "GSM11338" ], "type": "tissue", "id": "GDS833_37" }, { "dataset_id": "GDS833", "description": "pancreas", "sample_id": [ "GSM28806" ], "type": "tissue", "id": "GDS833_38" }, { "dataset_id": "GDS833", "description": "placenta", "sample_id": [ "GSM28826" ], "type": "tissue", "id": "GDS833_39" }, { "dataset_id": "GDS833", "description": "prostate", "sample_id": [ "GSM28818" ], "type": "tissue", "id": "GDS833_40" }, { "dataset_id": "GDS833", "description": "retina", "sample_id": [ "GSM28821" ], "type": "tissue", "id": "GDS833_41" }, { "dataset_id": "GDS833", "description": "salivary gland", "sample_id": [ "GSM28807" ], "type": "tissue", "id": "GDS833_42" }, { "dataset_id": "GDS833", "description": "skeletal muscle", "sample_id": [ "GSM28822" ], "type": "tissue", "id": "GDS833_43" }, { "dataset_id": "GDS833", "description": "spinal cord", "sample_id": [ "GSM11328" ], "type": "tissue", "id": "GDS833_44" }, { "dataset_id": "GDS833", "description": "spleen", "sample_id": [ "GSM11323" ], "type": "tissue", "id": "GDS833_45" }, { "dataset_id": "GDS833", "description": "stomach", "sample_id": [ "GSM11324" ], "type": "tissue", "id": "GDS833_46" }, { "dataset_id": "GDS833", "description": "testes", "sample_id": [ "GSM11341" ], "type": "tissue", "id": "GDS833_47" }, { "dataset_id": "GDS833", "description": "thymus", "sample_id": [ "GSM11326" ], "type": "tissue", "id": "GDS833_48" }, { "dataset_id": "GDS833", "description": "thyroid", "sample_id": [ "GSM28810" ], "type": "tissue", "id": "GDS833_49" }, { "dataset_id": "GDS833", "description": "tonsil", "sample_id": [ "GSM11335" ], "type": "tissue", "id": "GDS833_50" }, { "dataset_id": "GDS833", "description": "trachea", "sample_id": [ "GSM28809" ], "type": "tissue", "id": "GDS833_51" }, { "dataset_id": "GDS833", "description": "uterus", "sample_id": [ "GSM11329" ], "type": "tissue", "id": "GDS833_52" }, { "dataset_id": "GDS833", "description": "uterus corpus", "sample_id": [ "GSM28805" ], "type": "tissue", "id": "GDS833_53" } ], "taxid": "9606", "genes": 1294, "aggregation_function": "mean", "name": "GDS833", "version": 1.0, "instances": "54", "variables": 1296, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS833.tab", "compression": "gz" } ], [ [ "GDS834.tab" ], { "title": "Sindbis virus-induced cell death", "description": "Comparison of 293 cells that are resistant to Sindbis virus-induced cell death (clones 9, 43) versus cells that are sensitive to Sindbis virus-induced cell death (wild type 293).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1264", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS834", "description": "clone 9", "sample_id": [ "GSM20665", "GSM20676", "GSM20677" ], "type": "cell line", "id": "GDS834_1" }, { "dataset_id": "GDS834", "description": "clone 43", "sample_id": [ "GSM20678", "GSM20679", "GSM20680" ], "type": "cell line", "id": "GDS834_2" }, { "dataset_id": "GDS834", "description": "WT 293", "sample_id": [ "GSM20681", "GSM20682", "GSM20683" ], "type": "cell line", "id": "GDS834_3" }, { "dataset_id": "GDS834", "description": "resistant cells", "sample_id": [ "GSM20665", "GSM20676", "GSM20677", "GSM20678", "GSM20679", "GSM20680" ], "type": "other", "id": "GDS834_4" }, { "dataset_id": "GDS834", "description": "sensitive cells", "sample_id": [ "GSM20681", "GSM20682", "GSM20683" ], "type": "other", "id": "GDS834_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS834", "version": 1.0, "instances": "9", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS834.tab", "compression": "gz" } ], [ [ "GDS835.tab" ], { "title": "Spermatogonia in Zfp145 knockout (MG-U74A)", "description": "Expression analysis of spermatogonia, mitotic germ cells of the testis, in 1 week old wild type or Zfp145 (Plzf) knockout. PLZF plays role in maintenance of spermatogonial stem cells.", "type": "Expression profiling by array", "pubmed_id": "15156143", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1399", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS835", "description": "wild type", "sample_id": [ "GSM23111" ], "type": "genotype/variation", "id": "GDS835_1" }, { "dataset_id": "GDS835", "description": "Zfp145 knockout", "sample_id": [ "GSM23112" ], "type": "genotype/variation", "id": "GDS835_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS835", "version": 1.0, "instances": "2", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS835.tab", "compression": "gz" } ], [ [ "GDS836.tab" ], { "title": "Spermatogonia in Zfp145 knockout (MG-U74B)", "description": "Expression analysis of spermatogonia, mitotic germ cells of the testis, in 1 week old wild type or Zfp145 (Plzf) knockout. PLZF plays role in maintenance of spermatogonial stem cells.", "type": "Expression profiling by array", "pubmed_id": "15156143", "platform": "GPL82", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12477", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1399", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS836", "description": "wild type", "sample_id": [ "GSM23113" ], "type": "genotype/variation", "id": "GDS836_1" }, { "dataset_id": "GDS836", "description": "Zfp145 knockout", "sample_id": [ "GSM23114" ], "type": "genotype/variation", "id": "GDS836_2" } ], "taxid": "10090", "genes": 9253, "aggregation_function": "mean", "name": "GDS836", "version": 1.0, "instances": "2", "variables": 9255, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS836.tab", "compression": "gz" } ], [ [ "GDS837.tab" ], { "title": "Spermatogonia in Zfp145 knockout (MG-U74C)", "description": "Expression analysis of spermatogonia, mitotic germ cells of the testis, in 1 week old wild type or Zfp145 (Plzf) knockout. PLZF plays role in maintenance of spermatogonial stem cells.", "type": "Expression profiling by array", "pubmed_id": "15156143", "platform": "GPL83", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "11934", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "2", "value_type": "count", "reference_series": "GSE1399", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS837", "description": "wild type", "sample_id": [ "GSM23115" ], "type": "genotype/variation", "id": "GDS837_1" }, { "dataset_id": "GDS837", "description": "Zfp145 knockout", "sample_id": [ "GSM23116" ], "type": "genotype/variation", "id": "GDS837_2" } ], "taxid": "10090", "genes": 9976, "aggregation_function": "mean", "name": "GDS837", "version": 1.0, "instances": "2", "variables": 9978, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS837.tab", "compression": "gz" } ], [ [ "GDS838.tab" ], { "title": "Imatinib effects on chronic myelogenous leukemia CD34+ cells", "description": "Comparison of purified bone marrow CD34+ cells from imatinib-treated chronic myelogenous leukemia (CML) patients and healthy donors.", "type": "Expression profiling by array", "pubmed_id": "15618956", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "transformed count", "reference_series": "GSE1418", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS838", "description": "control", "sample_id": [ "GSM23406", "GSM23407", "GSM23408", "GSM23409", "GSM23410", "GSM23411" ], "type": "agent", "id": "GDS838_1" }, { "dataset_id": "GDS838", "description": "imatinib", "sample_id": [ "GSM23412", "GSM23414", "GSM23415", "GSM23416", "GSM23418", "GSM23420", "GSM23421", "GSM23423" ], "type": "agent", "id": "GDS838_2" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS838", "version": 1.0, "instances": "14", "variables": 8551, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS838.tab", "compression": "gz" } ], [ [ "GDS840.tab" ], { "title": "Hair follicle stem cell characterization", "description": "Analysis of hair follicle stem cells (FACS-isolated Keratin1-15-EGFP-positive keratinocytes) from bulge cell population of 50-60 day old female B6SJL/F1 transgenics. Results provide targets for the treatment of hair loss and other disorders of skin and hair.", "type": "Expression profiling by array", "pubmed_id": "15024388", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1096", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS840", "description": "non-bulge keratinocyte", "sample_id": [ "GSM17445", "GSM17448", "GSM17449" ], "type": "cell type", "id": "GDS840_1" }, { "dataset_id": "GDS840", "description": "bulge keratinocyte", "sample_id": [ "GSM17444", "GSM17446", "GSM17447" ], "type": "cell type", "id": "GDS840_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS840", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS840.tab", "compression": "gz" } ], [ [ "GDS841.tab" ], { "title": "Adult acute myeloid leukemia: bone marrow and peripheral blood expression profiles (SHCO)", "description": "Part of a study profiling 54 bone marrow and 65 peripheral blood samples from 116 adults with acute myeloid leukemia (AML). Results identify distinct gene expression signatures that correlate with clinical outcomes. Signatures used to construct a clinical outcome predictor using 133 genes.", "type": "Expression profiling by array", "pubmed_id": [ "15084693", "16931630", "19903898" ], "platform": "GPL317", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "26", "value_type": "log ratio", "reference_series": "GSE425", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS841", "description": "bone marrow", "sample_id": [ "GSM6229", "GSM6231", "GSM6233", "GSM6234", "GSM6237", "GSM6242", "GSM6247", "GSM6249", "GSM6250" ], "type": "tissue", "id": "GDS841_1" }, { "dataset_id": "GDS841", "description": "peripheral blood", "sample_id": [ "GSM6228", "GSM6230", "GSM6232", "GSM6235", "GSM6236", "GSM6238", "GSM6239", "GSM6240", "GSM6241", "GSM6243", "GSM6244", "GSM6245", "GSM6246", "GSM6248", "GSM6251", "GSM6252", "GSM6253" ], "type": "tissue", "id": "GDS841_2" }, { "dataset_id": "GDS841", "description": "clinical outcome - alive", "sample_id": [ "GSM6234", "GSM6236", "GSM6239", "GSM6241", "GSM6242", "GSM6244", "GSM6245", "GSM6246", "GSM6247", "GSM6248", "GSM6249" ], "type": "disease state", "id": "GDS841_3" }, { "dataset_id": "GDS841", "description": "clinical outcome - dead", "sample_id": [ "GSM6228", "GSM6229", "GSM6230", "GSM6231", "GSM6232", "GSM6233", "GSM6235", "GSM6237", "GSM6238", "GSM6240", "GSM6243", "GSM6250", "GSM6251", "GSM6252", "GSM6253" ], "type": "disease state", "id": "GDS841_4" }, { "dataset_id": "GDS841", "description": "normal karyotype", "sample_id": [ "GSM6232", "GSM6233", "GSM6234", "GSM6235", "GSM6236", "GSM6240", "GSM6247", "GSM6248", "GSM6249", "GSM6250", "GSM6252", "GSM6253" ], "type": "genotype/variation", "id": "GDS841_5" }, { "dataset_id": "GDS841", "description": "aberrant karyotype", "sample_id": [ "GSM6228", "GSM6229", "GSM6230", "GSM6231", "GSM6237", "GSM6238", "GSM6239", "GSM6241", "GSM6242", "GSM6243", "GSM6244", "GSM6245", "GSM6246", "GSM6251" ], "type": "genotype/variation", "id": "GDS841_6" } ], "taxid": "9606", "genes": 36137, "aggregation_function": "mean", "name": "GDS841", "version": 1.0, "instances": "26", "variables": 36141, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS841.tab", "compression": "gz" } ], [ [ "GDS843.tab" ], { "title": "Adult acute myeloid leukemia: bone marrow and peripheral blood expression profiles (SHDJ)", "description": "Part of a study profiling 54 bone marrow and 65 peripheral blood samples from 116 adults with acute myeloid leukemia (AML). Results identify distinct gene expression signatures that correlate with clinical outcomes. Signatures used to construct a clinical outcome predictor using 133 genes.", "type": "Expression profiling by array", "pubmed_id": [ "15084693", "16931630", "19903898" ], "platform": "GPL319", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "43008", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "49", "value_type": "log ratio", "reference_series": "GSE425", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS843", "description": "clinical outcome - alive", "sample_id": [ "GSM6299", "GSM6300", "GSM6301", "GSM6302", "GSM6304", "GSM6308", "GSM6312", "GSM6317", "GSM6321", "GSM6323", "GSM6325", "GSM6326", "GSM6327", "GSM6328", "GSM6329", "GSM6331", "GSM6333", "GSM6335", "GSM6336", "GSM6337", "GSM6342", "GSM6343" ], "type": "disease state", "id": "GDS843_1" }, { "dataset_id": "GDS843", "description": "clinical outcome - dead in complete remission", "sample_id": [ "GSM6298", "GSM6305" ], "type": "disease state", "id": "GDS843_2" }, { "dataset_id": "GDS843", "description": "clinical outcome - dead", "sample_id": [ "GSM6303", "GSM6306", "GSM6307", "GSM6309", "GSM6310", "GSM6311", "GSM6313", "GSM6314", "GSM6315", "GSM6316", "GSM6318", "GSM6319", "GSM6320", "GSM6322", "GSM6324", "GSM6330", "GSM6332", "GSM6334", "GSM6338", "GSM6339", "GSM6340", "GSM6341", "GSM6344", "GSM6345", "GSM6346" ], "type": "disease state", "id": "GDS843_3" }, { "dataset_id": "GDS843", "description": "normal karyotype", "sample_id": [ "GSM6298", "GSM6299", "GSM6305", "GSM6306", "GSM6307", "GSM6308", "GSM6310", "GSM6313", "GSM6314", "GSM6315", "GSM6325", "GSM6331", "GSM6332", "GSM6335", "GSM6336", "GSM6338", "GSM6341", "GSM6342" ], "type": "genotype/variation", "id": "GDS843_4" }, { "dataset_id": "GDS843", "description": "aberrant karyotype", "sample_id": [ "GSM6300", "GSM6301", "GSM6302", "GSM6303", "GSM6304", "GSM6309", "GSM6311", "GSM6312", "GSM6316", "GSM6317", "GSM6318", "GSM6319", "GSM6320", "GSM6321", "GSM6322", "GSM6323", "GSM6324", "GSM6326", "GSM6327", "GSM6328", "GSM6329", "GSM6330", "GSM6333", "GSM6334", "GSM6337", "GSM6339", "GSM6340", "GSM6343", "GSM6344", "GSM6345", "GSM6346" ], "type": "genotype/variation", "id": "GDS843_5" }, { "dataset_id": "GDS843", "description": "peripheral blood", "sample_id": [ "GSM6299", "GSM6300", "GSM6301", "GSM6303", "GSM6305", "GSM6306", "GSM6309", "GSM6310", "GSM6311", "GSM6313", "GSM6315", "GSM6317", "GSM6319", "GSM6320", "GSM6321", "GSM6323", "GSM6324", "GSM6326", "GSM6330", "GSM6331", "GSM6332", "GSM6333", "GSM6334", "GSM6337", "GSM6340", "GSM6341", "GSM6344", "GSM6345" ], "type": "tissue", "id": "GDS843_6" }, { "dataset_id": "GDS843", "description": "bone marrow", "sample_id": [ "GSM6298", "GSM6302", "GSM6304", "GSM6307", "GSM6308", "GSM6312", "GSM6314", "GSM6316", "GSM6318", "GSM6322", "GSM6325", "GSM6327", "GSM6328", "GSM6329", "GSM6335", "GSM6336", "GSM6338", "GSM6339", "GSM6342", "GSM6343", "GSM6346" ], "type": "tissue", "id": "GDS843_7" } ], "taxid": "9606", "genes": 34459, "aggregation_function": "mean", "name": "GDS843", "version": 1.0, "instances": "49", "variables": 34463, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS843.tab", "compression": "gz" } ], [ [ "GDS845.tab" ], { "title": "Breast cancer cell line ME16C response to chemotherapeutics: time course", "description": "Analysis of the response of the basal epithelium derived breast cancer line ME16C to either doxorubicin or 5-fluorouracil. Cells examined 12, 24, and 36 hours following treatment. Results provide insight into the response of breast cancers derived from different cell types to chemotherapeutics.", "type": "Expression profiling by array", "pubmed_id": "15205334", "platform": "GPL550", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20163", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log ratio", "reference_series": "GSE763", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS845", "description": "untreated", "sample_id": [ "GSM11707", "GSM11716", "GSM11721", "GSM11850", "GSM11851", "GSM11852" ], "type": "agent", "id": "GDS845_1" }, { "dataset_id": "GDS845", "description": "0.5 uM doxorubicin", "sample_id": [ "GSM11694", "GSM11695", "GSM11734", "GSM11843", "GSM11861", "GSM11862" ], "type": "agent", "id": "GDS845_2" }, { "dataset_id": "GDS845", "description": "0.06 mM 5-fluorouracil", "sample_id": [ "GSM11683", "GSM11691", "GSM11697", "GSM11714", "GSM11723", "GSM11845" ], "type": "agent", "id": "GDS845_3" }, { "dataset_id": "GDS845", "description": "12 h", "sample_id": [ "GSM11694", "GSM11695", "GSM11697", "GSM11707", "GSM11714", "GSM11716" ], "type": "time", "id": "GDS845_4" }, { "dataset_id": "GDS845", "description": "24 h", "sample_id": [ "GSM11723", "GSM11734", "GSM11845", "GSM11850", "GSM11851", "GSM11861" ], "type": "time", "id": "GDS845_5" }, { "dataset_id": "GDS845", "description": "36 h", "sample_id": [ "GSM11683", "GSM11691", "GSM11721", "GSM11843", "GSM11852", "GSM11862" ], "type": "time", "id": "GDS845_6" } ], "taxid": "9606", "genes": 17807, "aggregation_function": "mean", "name": "GDS845", "version": 1.0, "instances": "18", "variables": 17810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS845.tab", "compression": "gz" } ], [ [ "GDS846.tab" ], { "title": "Breast cancer cell line HME-CC response to chemotherapeutics: time course", "description": "Analysis of the response of basal epithelium derived breast cancer line HME-CC to either doxorubicin or 5-fluorouracil. Cells examined 12, 24, and 36 hours following treatment. Results provide insight into the response of breast cancers derived from different cell types to chemotherapeutics.", "type": "Expression profiling by array", "pubmed_id": "15205334", "platform": "GPL550", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20163", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "19", "value_type": "log ratio", "reference_series": "GSE763", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS846", "description": "untreated", "sample_id": [ "GSM11708", "GSM11735", "GSM11733", "GSM11863", "GSM11710", "GSM11712" ], "type": "agent", "id": "GDS846_1" }, { "dataset_id": "GDS846", "description": "0.2 uM doxorubicin", "sample_id": [ "GSM11732", "GSM11844", "GSM11842", "GSM11860", "GSM11686", "GSM11688", "GSM11846" ], "type": "agent", "id": "GDS846_2" }, { "dataset_id": "GDS846", "description": "0.01 mM 5-fluorouracil", "sample_id": [ "GSM11680", "GSM11698", "GSM11840", "GSM11847", "GSM11685", "GSM11699" ], "type": "agent", "id": "GDS846_3" }, { "dataset_id": "GDS846", "description": "12 h", "sample_id": [ "GSM11680", "GSM11698", "GSM11732", "GSM11844", "GSM11708", "GSM11735" ], "type": "time", "id": "GDS846_4" }, { "dataset_id": "GDS846", "description": "24 h", "sample_id": [ "GSM11840", "GSM11847", "GSM11842", "GSM11860", "GSM11863", "GSM11733" ], "type": "time", "id": "GDS846_5" }, { "dataset_id": "GDS846", "description": "36 h", "sample_id": [ "GSM11685", "GSM11699", "GSM11686", "GSM11688", "GSM11846", "GSM11710", "GSM11712" ], "type": "time", "id": "GDS846_6" } ], "taxid": "9606", "genes": 17807, "aggregation_function": "mean", "name": "GDS846", "version": 1.0, "instances": "19", "variables": 17810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS846.tab", "compression": "gz" } ], [ [ "GDS847.tab" ], { "title": "Breast cancer cell line MCF-7 response to chemotherapeutics: time course", "description": "Analysis of the response of luminal epithelium derived breast cancer line MCF-7 to either doxorubicin or 5-fluorouracil. Cells examined 12, 24, and 36 hours following treatment. Results provide insight into the response of breast cancers derived from different cell types to chemotherapeutics.", "type": "Expression profiling by array", "pubmed_id": "15205334", "platform": "GPL550", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20163", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "19", "value_type": "log ratio", "reference_series": "GSE763", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS847", "description": "untreated", "sample_id": [ "GSM11709", "GSM11720", "GSM11725", "GSM11726", "GSM11837", "GSM11864" ], "type": "agent", "id": "GDS847_1" }, { "dataset_id": "GDS847", "description": "0.9 uM doxorubicin", "sample_id": [ "GSM11681", "GSM11687", "GSM11689", "GSM11693", "GSM11704", "GSM11727", "GSM11838" ], "type": "agent", "id": "GDS847_2" }, { "dataset_id": "GDS847", "description": "0.3 mM 5-fluorouracil", "sample_id": [ "GSM11703", "GSM11705", "GSM11713", "GSM11722", "GSM11728", "GSM11730" ], "type": "agent", "id": "GDS847_3" }, { "dataset_id": "GDS847", "description": "12 h", "sample_id": [ "GSM11687", "GSM11693", "GSM11703", "GSM11705", "GSM11709", "GSM11720" ], "type": "time", "id": "GDS847_4" }, { "dataset_id": "GDS847", "description": "24 h", "sample_id": [ "GSM11722", "GSM11726", "GSM11727", "GSM11730", "GSM11837", "GSM11838" ], "type": "time", "id": "GDS847_5" }, { "dataset_id": "GDS847", "description": "36 h", "sample_id": [ "GSM11681", "GSM11689", "GSM11704", "GSM11713", "GSM11725", "GSM11728", "GSM11864" ], "type": "time", "id": "GDS847_6" } ], "taxid": "9606", "genes": 17807, "aggregation_function": "mean", "name": "GDS847", "version": 1.0, "instances": "19", "variables": 17810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS847.tab", "compression": "gz" } ], [ [ "GDS848.tab" ], { "title": "Breast cancer cell line ZR-75-1 response to chemotherapeutics: time course", "description": "Analysis of the response of luminal epithelium derived breast cancer line ZR-75-1 to either doxorubicin or 5-fluorouracil. Cells examined 12, 24, and 36 hours following treatment. Results provide insight into the response of breast cancers derived from different cell types to chemotherapeutics.", "type": "Expression profiling by array", "pubmed_id": "15205334", "platform": "GPL550", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "20163", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "19", "value_type": "log ratio", "reference_series": "GSE763", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS848", "description": "untreated", "sample_id": [ "GSM11706", "GSM11711", "GSM11729", "GSM11746", "GSM11853", "GSM11854" ], "type": "agent", "id": "GDS848_1" }, { "dataset_id": "GDS848", "description": "0.4 uM doxorubicin", "sample_id": [ "GSM11682", "GSM11690", "GSM11731", "GSM11836", "GSM11839", "GSM11849" ], "type": "agent", "id": "GDS848_2" }, { "dataset_id": "GDS848", "description": "3.0 mM 5-fluorouracil", "sample_id": [ "GSM11684", "GSM11692", "GSM11696", "GSM11715", "GSM11724", "GSM11841", "GSM11901" ], "type": "agent", "id": "GDS848_3" }, { "dataset_id": "GDS848", "description": "12 h", "sample_id": [ "GSM11692", "GSM11706", "GSM11731", "GSM11839", "GSM11841", "GSM11853", "GSM11901" ], "type": "time", "id": "GDS848_4" }, { "dataset_id": "GDS848", "description": "24 h", "sample_id": [ "GSM11715", "GSM11724", "GSM11729", "GSM11746", "GSM11836", "GSM11849" ], "type": "time", "id": "GDS848_5" }, { "dataset_id": "GDS848", "description": "36 h", "sample_id": [ "GSM11682", "GSM11684", "GSM11690", "GSM11696", "GSM11711", "GSM11854" ], "type": "time", "id": "GDS848_6" } ], "taxid": "9606", "genes": 17807, "aggregation_function": "mean", "name": "GDS848", "version": 1.0, "instances": "19", "variables": 17810, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS848.tab", "compression": "gz" } ], [ [ "GDS849.tab" ], { "title": "Hereditary spastic paraparesis", "description": "Analysis of gene expression in skeletal muscle of three patients affected by hereditary spastic paraplegia (HSP) caused by mutations of spastin (SPG4). SPG4 is an ubiquitously expressed protein involved in microtubule regulation and vesicle traffic.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1300", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS849", "description": "SPG4-linked HSP patient 1", "sample_id": [ "GSM21597" ], "type": "individual", "id": "GDS849_1" }, { "dataset_id": "GDS849", "description": "SPG4-linked HSP patient 2", "sample_id": [ "GSM21599" ], "type": "individual", "id": "GDS849_2" }, { "dataset_id": "GDS849", "description": "SPG4-linked HSP patient 3", "sample_id": [ "GSM21601" ], "type": "individual", "id": "GDS849_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS849", "version": 1.0, "instances": "3", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS849.tab", "compression": "gz" } ], [ [ "GDS85.tab" ], { "title": "Serum stimulation time course (10k_print2)", "description": "Temporal transcriptional program of primary fibroblasts in response to serum. Samples taken at various time points up to 24 hours.", "type": "Expression profiling by array", "pubmed_id": "9872747", "platform": "GPL169", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE58", "order": "ordered", "update_date": "Mar 22 2004", "subsets": [ { "dataset_id": "GDS85", "description": "0 minute", "sample_id": [ "GSM2167" ], "type": "time", "id": "GDS85_1" }, { "dataset_id": "GDS85", "description": "30 minute", "sample_id": [ "GSM2161" ], "type": "time", "id": "GDS85_2" }, { "dataset_id": "GDS85", "description": "1 hour", "sample_id": [ "GSM2162" ], "type": "time", "id": "GDS85_3" }, { "dataset_id": "GDS85", "description": "4 hour", "sample_id": [ "GSM2164" ], "type": "time", "id": "GDS85_4" }, { "dataset_id": "GDS85", "description": "6 hour", "sample_id": [ "GSM2165" ], "type": "time", "id": "GDS85_5" }, { "dataset_id": "GDS85", "description": "8 hour", "sample_id": [ "GSM2159" ], "type": "time", "id": "GDS85_6" }, { "dataset_id": "GDS85", "description": "12 hour", "sample_id": [ "GSM2160" ], "type": "time", "id": "GDS85_7" }, { "dataset_id": "GDS85", "description": "16 hour", "sample_id": [ "GSM2156" ], "type": "time", "id": "GDS85_8" }, { "dataset_id": "GDS85", "description": "20 hour", "sample_id": [ "GSM2157" ], "type": "time", "id": "GDS85_9" }, { "dataset_id": "GDS85", "description": "24 hour", "sample_id": [ "GSM2158" ], "type": "time", "id": "GDS85_10" } ], "taxid": "9606", "genes": 9209, "aggregation_function": "mean", "name": "GDS85", "version": 1.0, "instances": "10", "variables": 9211, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS85.tab", "compression": "gz" } ], [ [ "GDS851.tab" ], { "title": "Extraocular muscle: comparison of global and orbital layers", "description": "Expression profiling of microdissected global and orbital layers of the rectus extraocular muscle (EOM) from 2 adult Sprague-Dawleys. By identifying molecular differences between the 2 layers, results provide insight into the possible specialized function of each muscle layer.", "type": "Expression profiling by array", "pubmed_id": "15467012", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1374", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS851", "description": "global layer", "sample_id": [ "GSM22327", "GSM22328", "GSM22331", "GSM22332" ], "type": "tissue", "id": "GDS851_1" }, { "dataset_id": "GDS851", "description": "orbital layer", "sample_id": [ "GSM22329", "GSM22330", "GSM22333", "GSM22334" ], "type": "tissue", "id": "GDS851_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS851", "version": 1.0, "instances": "8", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS851.tab", "compression": "gz" } ], [ [ "GDS852.tab" ], { "title": "Alveolar epithelial cell line A549 response to acute lung injury causing stimuli: time course", "description": "Examination of alveolar epithelial A549 cells in models of pulmonary parenchymal cell activation: exposure to tumor necrosis factor-alpha (TNF-alpha), lipopolysaccharide (LPS), or cyclic stretch. Cells examined 1 and 4 hours after exposure to each acute lung injury-causing stimulus.", "type": "Expression profiling by array", "pubmed_id": "15454581", "platform": "GPL201", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8793", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1541", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS852", "description": "control", "sample_id": [ "GSM26477", "GSM26478", "GSM26479", "GSM26480" ], "type": "protocol", "id": "GDS852_1" }, { "dataset_id": "GDS852", "description": "lipopolysaccharide", "sample_id": [ "GSM26481", "GSM26482", "GSM26483", "GSM26484" ], "type": "protocol", "id": "GDS852_2" }, { "dataset_id": "GDS852", "description": "stretch", "sample_id": [ "GSM26485", "GSM26486", "GSM26487", "GSM26488" ], "type": "protocol", "id": "GDS852_3" }, { "dataset_id": "GDS852", "description": "tumor necrosis factor", "sample_id": [ "GSM26489", "GSM26490", "GSM26491", "GSM26492" ], "type": "protocol", "id": "GDS852_4" }, { "dataset_id": "GDS852", "description": "tumor necrosis factor, stretch", "sample_id": [ "GSM26493", "GSM26494", "GSM26495", "GSM26496" ], "type": "protocol", "id": "GDS852_5" }, { "dataset_id": "GDS852", "description": "1 h", "sample_id": [ "GSM26477", "GSM26478", "GSM26481", "GSM26482", "GSM26485", "GSM26486", "GSM26489", "GSM26490", "GSM26493", "GSM26494" ], "type": "time", "id": "GDS852_6" }, { "dataset_id": "GDS852", "description": "4 h", "sample_id": [ "GSM26479", "GSM26480", "GSM26483", "GSM26484", "GSM26487", "GSM26488", "GSM26491", "GSM26492", "GSM26495", "GSM26496" ], "type": "time", "id": "GDS852_7" } ], "taxid": "9606", "genes": 8549, "aggregation_function": "mean", "name": "GDS852", "version": 1.0, "instances": "20", "variables": 8552, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS852.tab", "compression": "gz" } ], [ [ "GDS853.tab" ], { "title": "Erythroid and non-erythroid granulocyte-monocyte progenitor cells", "description": "Expression profiling of FACS-isolated erythroid progenitor and non-erythroid granulocyte-monocyte progenitor cells from 10-16 week old C57BL/6-S129Ola. Results provide insight into erythropoiesis and identify an expression pattern unique to erythroid progenitors.", "type": "Expression profiling by array", "pubmed_id": "15522951", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1584", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS853", "description": "granulocyte-monoctye progenitor", "sample_id": [ "GSM27216" ], "type": "cell type", "id": "GDS853_1" }, { "dataset_id": "GDS853", "description": "erythroid progenitor", "sample_id": [ "GSM27212", "GSM27214" ], "type": "cell type", "id": "GDS853_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS853", "version": 1.0, "instances": "3", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS853.tab", "compression": "gz" } ], [ [ "GDS854.tab" ], { "title": "Transforming growth factor beta effect on acute myelogenous leukemia cells", "description": "Analysis of M091 acute myelogenous leukemia cells after treatment with 200 pM transforming growth factor beta (TGFbeta) for 2 and 4 hours. Part of a study comparing M091 to hematopoietic stem cells. Reveals cytostatic role of TGFbeta in hematopoiesis and identifies p57 as a possible tumor suppressor", "type": "Expression profiling by array", "pubmed_id": "15477587", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1805", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS854", "description": "0 h", "sample_id": [ "GSM31117", "GSM31119", "GSM31120" ], "type": "time", "id": "GDS854_1" }, { "dataset_id": "GDS854", "description": "2 h", "sample_id": [ "GSM31122", "GSM31123", "GSM31124" ], "type": "time", "id": "GDS854_2" }, { "dataset_id": "GDS854", "description": "4 h", "sample_id": [ "GSM31126", "GSM31127" ], "type": "time", "id": "GDS854_3" }, { "dataset_id": "GDS854", "description": "untreated", "sample_id": [ "GSM31117", "GSM31119", "GSM31120" ], "type": "agent", "id": "GDS854_4" }, { "dataset_id": "GDS854", "description": "TGFbeta", "sample_id": [ "GSM31122", "GSM31123", "GSM31124", "GSM31126", "GSM31127" ], "type": "agent", "id": "GDS854_5" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS854", "version": 1.0, "instances": "8", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS854.tab", "compression": "gz" } ], [ [ "GDS855.tab" ], { "title": "Transforming growth factor beta effect on CD34+ hematopoietic stem cells", "description": "Analysis of CB-CD34 CD34+ hematopoietic stem cells after treatment with 200 pM TGFbeta for 2 and 4 hours. Part of a study comparing CB-CD34 cells to acute myelogenous leukemia cells. Reveals cytostatic role of TGFbeta in hematopoiesis and identifies p57 as a possible tumor suppressor.", "type": "Expression profiling by array", "pubmed_id": "15477587", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE1802", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS855", "description": "0 h", "sample_id": [ "GSM31092", "GSM31093", "GSM31094", "GSM31095" ], "type": "time", "id": "GDS855_1" }, { "dataset_id": "GDS855", "description": "2 h", "sample_id": [ "GSM31096", "GSM31097", "GSM31098" ], "type": "time", "id": "GDS855_2" }, { "dataset_id": "GDS855", "description": "4 h", "sample_id": [ "GSM31099", "GSM31100", "GSM31101", "GSM31102" ], "type": "time", "id": "GDS855_3" }, { "dataset_id": "GDS855", "description": "untreated", "sample_id": [ "GSM31092", "GSM31093", "GSM31094", "GSM31095" ], "type": "agent", "id": "GDS855_4" }, { "dataset_id": "GDS855", "description": "TGFbeta", "sample_id": [ "GSM31096", "GSM31097", "GSM31098", "GSM31099", "GSM31100", "GSM31101", "GSM31102" ], "type": "agent", "id": "GDS855_5" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS855", "version": 1.0, "instances": "11", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS855.tab", "compression": "gz" } ], [ [ "GDS856.tab" ], { "title": "Fibrillin-1 deficiency effect on heart mitral valves", "description": "Expression profiling of heart mitral valve from homozygous and heterozygous C1039G fibrillin-1 mutants at 6.5 postnatal days. Fibrillin-1 deficient mutants are models for acquired myxomatous mitral valve disease and Marfan syndrome.", "type": "Expression profiling by array", "pubmed_id": "15546004", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1852", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS856", "description": "wild type", "sample_id": [ "GSM32697" ], "type": "genotype/variation", "id": "GDS856_1" }, { "dataset_id": "GDS856", "description": "heterozygous Fbn1 mutant", "sample_id": [ "GSM32694", "GSM32695" ], "type": "genotype/variation", "id": "GDS856_2" }, { "dataset_id": "GDS856", "description": "homozygous Fbn1 mutant", "sample_id": [ "GSM32696" ], "type": "genotype/variation", "id": "GDS856_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS856", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS856.tab", "compression": "gz" } ], [ [ "GDS857.tab" ], { "title": "Corneal stromal cell differentiation", "description": "Expression profiling of cultured keratocyte, fibroblast, and myofibroblast cells of the corneal stroma. Cultured cells compared to cornea from adults and 10 day postnatals. Keratocytes maintain the transparent corneal stroma, and upon injury differentiate into fibroblasts and myofibroblasts.", "type": "Expression profiling by array", "pubmed_id": "15452052", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1867", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS857", "description": "cornea", "sample_id": [ "GSM32927", "GSM32928", "GSM32929", "GSM32930", "GSM32931" ], "type": "cell type", "id": "GDS857_1" }, { "dataset_id": "GDS857", "description": "keratocyte", "sample_id": [ "GSM32935", "GSM32936", "GSM32937" ], "type": "cell type", "id": "GDS857_2" }, { "dataset_id": "GDS857", "description": "fibroblast", "sample_id": [ "GSM32932", "GSM32933", "GSM32934" ], "type": "cell type", "id": "GDS857_3" }, { "dataset_id": "GDS857", "description": "myofibroblast", "sample_id": [ "GSM32938", "GSM32939", "GSM32940" ], "type": "cell type", "id": "GDS857_4" }, { "dataset_id": "GDS857", "description": "10 d postnatal", "sample_id": [ "GSM32930", "GSM32931" ], "type": "protocol", "id": "GDS857_5" }, { "dataset_id": "GDS857", "description": "adult", "sample_id": [ "GSM32927", "GSM32928", "GSM32929" ], "type": "protocol", "id": "GDS857_6" }, { "dataset_id": "GDS857", "description": "cell culture", "sample_id": [ "GSM32932", "GSM32933", "GSM32934", "GSM32935", "GSM32936", "GSM32937", "GSM32938", "GSM32939", "GSM32940" ], "type": "protocol", "id": "GDS857_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS857", "version": 1.0, "instances": "14", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS857.tab", "compression": "gz" } ], [ [ "GDS858.tab" ], { "title": "Mucoid and motile Pseudomonas aeruginosa infected lung epithelial cell comparison", "description": "Comparison of lung epithelial Calu-3 cells infected with the mucoid alginate-producing FRD1 strain to those infected with the isogenic motile flagellin-producing FRD440 strain of Pseudomonas aeruginosa. Mucoid and motile strains are associated with chronic and acute lung infections, respectively.", "type": "Expression profiling by array", "pubmed_id": "15494517", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE923", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS858", "description": "control", "sample_id": [ "GSM14498", "GSM14499", "GSM14500", "GSM14501" ], "type": "genotype/variation", "id": "GDS858_1" }, { "dataset_id": "GDS858", "description": "non-mucoid, non-motile", "sample_id": [ "GSM14506", "GSM14507", "GSM14508", "GSM14513", "GSM14514", "GSM14515", "GSM14516" ], "type": "genotype/variation", "id": "GDS858_2" }, { "dataset_id": "GDS858", "description": "mucoid", "sample_id": [ "GSM14502", "GSM14503", "GSM14504", "GSM14505" ], "type": "genotype/variation", "id": "GDS858_3" }, { "dataset_id": "GDS858", "description": "motile", "sample_id": [ "GSM14509", "GSM14510", "GSM14511", "GSM14512" ], "type": "genotype/variation", "id": "GDS858_4" }, { "dataset_id": "GDS858", "description": "uninfected", "sample_id": [ "GSM14498", "GSM14499", "GSM14500", "GSM14501" ], "type": "infection", "id": "GDS858_5" }, { "dataset_id": "GDS858", "description": "FRD875", "sample_id": [ "GSM14513", "GSM14514", "GSM14515", "GSM14516" ], "type": "infection", "id": "GDS858_6" }, { "dataset_id": "GDS858", "description": "FRD1234", "sample_id": [ "GSM14506", "GSM14507", "GSM14508" ], "type": "infection", "id": "GDS858_7" }, { "dataset_id": "GDS858", "description": "FRD1", "sample_id": [ "GSM14502", "GSM14503", "GSM14504", "GSM14505" ], "type": "infection", "id": "GDS858_8" }, { "dataset_id": "GDS858", "description": "FRD440", "sample_id": [ "GSM14509", "GSM14510", "GSM14511", "GSM14512" ], "type": "infection", "id": "GDS858_9" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS858", "version": 1.0, "instances": "19", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS858.tab", "compression": "gz" } ], [ [ "GDS859.tab" ], { "title": "Peroxisome proliferator-activated receptor-gamma target genes in aorta", "description": "Analysis of aorta isolated from adult male C57BL/6J treated for 21 days with a peroxisome proliferator-activated receptor-gamma (PPARgamma) agonist rosiglitazone or vehicle. Diminished activity of PPARgamma may play role in pathogenesis of hypertension and vascular dysfunction.", "type": "Expression profiling by array", "pubmed_id": "15054141", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1011", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS859", "description": "rosiglitazone", "sample_id": [ "GSM15972", "GSM15973" ], "type": "agent", "id": "GDS859_1" }, { "dataset_id": "GDS859", "description": "vehicle", "sample_id": [ "GSM15974", "GSM15975" ], "type": "agent", "id": "GDS859_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS859", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS859.tab", "compression": "gz" } ], [ [ "GDS86.tab" ], { "title": "Serum stimulation time course (10k_print1)", "description": "Analysis of a temporal transcriptional program in the response of primary fibroblast cultures to serum. Samples taken at 15 minutes and 2 hours.", "type": "Expression profiling by array", "pubmed_id": "9872747", "platform": "GPL168", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "10176", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE58", "order": "ordered", "update_date": "Apr 08 2003", "subsets": [ { "dataset_id": "GDS86", "description": "15 minute", "sample_id": [ "GSM1726" ], "type": "time", "id": "GDS86_1" }, { "dataset_id": "GDS86", "description": "2 hour", "sample_id": [ "GSM1727" ], "type": "time", "id": "GDS86_2" } ], "taxid": "9606", "genes": 9230, "aggregation_function": "mean", "name": "GDS86", "version": 1.0, "instances": "2", "variables": 9232, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS86.tab", "compression": "gz" } ], [ [ "GDS860.tab" ], { "title": "Endothelin-1 effect on fibroblasts", "description": "Cultured primary lung fibroblasts incubated 4 hours in the presence or absence of 100 nM endothelin-1 (ET-1). Results suggest that ET-1 is involved in matrix synthesis and connective tissue deposition during wound repair and in pulmonary fibrosis.", "type": "Expression profiling by array", "pubmed_id": "15044479", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1081", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS860", "description": "untreated", "sample_id": [ "GSM15500", "GSM17262" ], "type": "agent", "id": "GDS860_1" }, { "dataset_id": "GDS860", "description": "endothelin-1", "sample_id": [ "GSM15501", "GSM17263" ], "type": "agent", "id": "GDS860_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS860", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS860.tab", "compression": "gz" } ], [ [ "GDS862.tab" ], { "title": "Sex-dependent and growth hormone-dependent gene expression (MWG Rat 5K Array)", "description": "Investigation of regulatory role of growth hormone (GH) in sexually dimorphic gene expression. Liver tissue from adult male and female rats untreated or treated with GH by 7 day continuous infusion examined.", "type": "Expression profiling by array", "pubmed_id": "14684848", "platform": "GPL500", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "5760", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE1146", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS862", "description": "female", "sample_id": [ "GSM19175", "GSM19176", "GSM19177", "GSM19178" ], "type": "other", "id": "GDS862_1" }, { "dataset_id": "GDS862", "description": "GH-treated male", "sample_id": [ "GSM19179", "GSM19180", "GSM19181", "GSM19182" ], "type": "other", "id": "GDS862_2" } ], "taxid": "10116", "genes": 4876, "aggregation_function": "mean", "name": "GDS862", "version": 1.0, "instances": "8", "variables": 4878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS862.tab", "compression": "gz" } ], [ [ "GDS863.tab" ], { "title": "Sex-dependent and growth hormone-dependent gene expression (MWG Rat Liver Array)", "description": "Investigation of regulatory role of growth hormone (GH) in sexually dimorphic gene expression. Liver tissue examined from adult male and female rats untreated or treated with GH by 7 day continuous infusion.", "type": "Expression profiling by array", "pubmed_id": "14684848", "platform": "GPL529", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "1440", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "2", "sample_count": "8", "value_type": "log ratio", "reference_series": "GSE1146", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS863", "description": "female", "sample_id": [ "GSM19183", "GSM19184", "GSM19185", "GSM19186" ], "type": "other", "id": "GDS863_1" }, { "dataset_id": "GDS863", "description": "GH-treated male", "sample_id": [ "GSM19187", "GSM19188", "GSM19189", "GSM19190" ], "type": "other", "id": "GDS863_2" } ], "taxid": "10116", "genes": 1320, "aggregation_function": "mean", "name": "GDS863", "version": 1.0, "instances": "8", "variables": 1322, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS863.tab", "compression": "gz" } ], [ [ "GDS866.tab" ], { "title": "Spatial gene expression in flowers (oligo array)", "description": "Comparison of gene expression profiles of inflorescences of the floral homeotic mutants apetala1, apetala2, apetala3, pistillata, and agamous with that of wild type plants. Several genes predicted to have floral organ-specific expression patterns.", "type": "Expression profiling by array", "pubmed_id": "15100403", "platform": "GPL1077", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted oligonucleotide", "feature_count": "26933", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE1275", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS866", "description": "apetala1", "sample_id": [ "GSM21016", "GSM21018" ], "type": "genotype/variation", "id": "GDS866_1" }, { "dataset_id": "GDS866", "description": "apetala2", "sample_id": [ "GSM21020", "GSM21022" ], "type": "genotype/variation", "id": "GDS866_2" }, { "dataset_id": "GDS866", "description": "apetala3", "sample_id": [ "GSM21024", "GSM21026" ], "type": "genotype/variation", "id": "GDS866_3" }, { "dataset_id": "GDS866", "description": "pistillata", "sample_id": [ "GSM21028", "GSM21030" ], "type": "genotype/variation", "id": "GDS866_4" }, { "dataset_id": "GDS866", "description": "agamous", "sample_id": [ "GSM21032", "GSM21034" ], "type": "genotype/variation", "id": "GDS866_5" } ], "taxid": "3702", "genes": 17208, "aggregation_function": "mean", "name": "GDS866", "version": 1.0, "instances": "10", "variables": 17210, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS866.tab", "compression": "gz" } ], [ [ "GDS867.tab" ], { "title": "Spatial gene expression in flowers (oligo array; dye-swap)", "description": "Comparison of gene expression profiles of inflorescences of the floral homeotic mutants apetala1, apetala2, apetala3, pistillata, and agamous with that of wild type plants. Several genes predicted to have floral organ-specific expression patterns.", "type": "Expression profiling by array", "pubmed_id": "15100403", "platform": "GPL1077", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted oligonucleotide", "feature_count": "26933", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE1275", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS867", "description": "apetala1", "sample_id": [ "GSM21017", "GSM21019" ], "type": "genotype/variation", "id": "GDS867_1" }, { "dataset_id": "GDS867", "description": "apetala2", "sample_id": [ "GSM21021", "GSM21023" ], "type": "genotype/variation", "id": "GDS867_2" }, { "dataset_id": "GDS867", "description": "apetala3", "sample_id": [ "GSM21025", "GSM21027" ], "type": "genotype/variation", "id": "GDS867_3" }, { "dataset_id": "GDS867", "description": "pistillata", "sample_id": [ "GSM21029", "GSM21031" ], "type": "genotype/variation", "id": "GDS867_4" }, { "dataset_id": "GDS867", "description": "agamous", "sample_id": [ "GSM21033", "GSM21035" ], "type": "genotype/variation", "id": "GDS867_5" } ], "taxid": "3702", "genes": 17208, "aggregation_function": "mean", "name": "GDS867", "version": 1.0, "instances": "10", "variables": 17210, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS867.tab", "compression": "gz" } ], [ [ "GDS868.tab" ], { "title": "MPSS transcriptome analysis project", "description": "Large scale transcriptome analysis using massively parallel signature sequencing (MPSS) technology. The focus of this project is to generate a reference tissue expression dataset for C57BL/6J.", "type": "Expression profiling by MPSS", "pubmed_id": "", "platform": "GPL1010", "platform_organism": "Mus musculus", "platform_technology_type": "MPSS", "feature_count": "71752", "sample_organism": "Mus musculus", "sample_type": "MPSS", "channel_count": "1", "sample_count": "87", "value_type": "count", "reference_series": "GSE1581", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS868", "description": "adrenal", "sample_id": [ "GSM34293", "GSM44327" ], "type": "tissue", "id": "GDS868_1" }, { "dataset_id": "GDS868", "description": "brain medulla", "sample_id": [ "GSM80478", "GSM80479" ], "type": "tissue", "id": "GDS868_2" }, { "dataset_id": "GDS868", "description": "brain pons", "sample_id": [ "GSM80480", "GSM80481" ], "type": "tissue", "id": "GDS868_3" }, { "dataset_id": "GDS868", "description": "brain TCS", "sample_id": [ "GSM36721", "GSM40111" ], "type": 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"dataset_id": "GDS868", "description": "esophagus", "sample_id": [ "GSM27139", "GSM35331" ], "type": "tissue", "id": "GDS868_34" }, { "dataset_id": "GDS868", "description": "large intestine", "sample_id": [ "GSM36723", "GSM40117" ], "type": "tissue", "id": "GDS868_35" }, { "dataset_id": "GDS868", "description": "small intestine", "sample_id": [ "GSM40120", "GSM47343" ], "type": "tissue", "id": "GDS868_36" }, { "dataset_id": "GDS868", "description": "stomach", "sample_id": [ "GSM35328" ], "type": "tissue", "id": "GDS868_37" }, { "dataset_id": "GDS868", "description": "embryo", "sample_id": [ "GSM40114" ], "type": "tissue", "id": "GDS868_38" }, { "dataset_id": "GDS868", "description": "cervix vagina", "sample_id": [ "GSM40112" ], "type": "tissue", "id": "GDS868_39" }, { "dataset_id": "GDS868", "description": "placenta", "sample_id": [ "GSM44333" ], "type": "tissue", "id": "GDS868_40" }, { "dataset_id": "GDS868", "description": "uterus (pregnant)", "sample_id": [ "GSM35329" ], "type": "tissue", "id": "GDS868_41" }, { "dataset_id": "GDS868", "description": "uterus", "sample_id": [ "GSM35330" ], "type": "tissue", "id": "GDS868_42" }, { "dataset_id": "GDS868", "description": "prostate", "sample_id": [ "GSM47342" ], "type": "tissue", "id": "GDS868_43" }, { "dataset_id": "GDS868", "description": "testis", "sample_id": [ "GSM40121" ], "type": "tissue", "id": "GDS868_44" }, { "dataset_id": "GDS868", "description": "lung", "sample_id": [ "GSM40118", "GSM40119" ], "type": "tissue", "id": "GDS868_45" }, { "dataset_id": "GDS868", "description": "lymph node", "sample_id": [ "GSM38494", "GSM44332" ], "type": "tissue", "id": "GDS868_46" }, { "dataset_id": "GDS868", "description": "bladder", "sample_id": [ "GSM27138", "GSM34294" ], "type": "tissue", "id": "GDS868_47" }, { "dataset_id": "GDS868", "description": "bone", "sample_id": [ "GSM34295", "GSM36603" ], "type": "tissue", "id": "GDS868_48" }, { "dataset_id": "GDS868", "description": "embryonic stem cells", "sample_id": [ "GSM87830", "GSM87831" ], "type": "tissue", "id": "GDS868_49" }, { "dataset_id": "GDS868", "description": "male", "sample_id": [ "GSM27138", "GSM34295", "GSM36605", "GSM34297", "GSM32354", "GSM32355", "GSM34296", "GSM32356", "GSM27139", "GSM36606", "GSM36722", "GSM27142", "GSM27143", "GSM36723", "GSM32357", "GSM36724", "GSM36607", "GSM36725", "GSM32359", "GSM38489", "GSM38491", "GSM38492", "GSM38494", "GSM38496", "GSM38497", "GSM38499", "GSM40111", "GSM40116", "GSM40119", "GSM40121", "GSM44327", "GSM44337", "GSM47343", "GSM47346", "GSM47342", "GSM44330", "GSM47345", "GSM44336", "GSM80479", "GSM80481" ], "type": "gender", "id": "GDS868_50" }, { "dataset_id": "GDS868", "description": "female", "sample_id": [ "GSM34293", "GSM34294", "GSM36603", "GSM36721", "GSM36604", "GSM32353", "GSM35331", "GSM27140", "GSM34298", "GSM27141", "GSM35332", "GSM34299", "GSM32358", "GSM35333", "GSM36608", "GSM35328", "GSM36609", "GSM35330", "GSM35329", "GSM27144", "GSM38490", "GSM38493", "GSM38495", "GSM38498", "GSM40112", "GSM40113", "GSM40115", "GSM40117", "GSM40118", "GSM40120", "GSM44328", "GSM44331", "GSM44332", "GSM44335", "GSM47338", "GSM47339", "GSM47340", "GSM47341", "GSM44329", "GSM47344", "GSM44333", "GSM44334", "GSM80478", "GSM80480" ], "type": "gender", "id": "GDS868_51" }, { "dataset_id": "GDS868", "description": "mixed", "sample_id": [ "GSM40114" ], "type": "gender", "id": "GDS868_52" }, { "dataset_id": "GDS868", "description": "N/A", "sample_id": [ "GSM87830", "GSM87831" ], "type": "gender", "id": "GDS868_53" } ], "taxid": "10090", "genes": 39220, "aggregation_function": "mean", "name": "GDS868", "version": 1.0, "instances": "87", "variables": 39223, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS868.tab", "compression": "gz" } ], [ [ "GDS869.tab" ], { "title": "Spinal cord injury and regeneration time course: below T9 (RG-U34A)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord below thoracic vertebrae T9 at various time points up to 28 days post injury. Mild, moderate and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "55", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS869", "description": "control", "sample_id": [ "GSM31300", "GSM31306", "GSM31280", "GSM31281", "GSM31289", "GSM31287", "GSM31273", "GSM31274", "GSM31286", "GSM31288", "GSM31283", "GSM31278" ], "type": "protocol", "id": "GDS869_1" }, { "dataset_id": "GDS869", "description": "mild injury", "sample_id": [ "GSM31329", "GSM31328", "GSM31330", "GSM31324", "GSM31333", "GSM31334", "GSM31332", "GSM31337", "GSM31318", "GSM31317", "GSM31316", "GSM31319", "GSM31320", "GSM31321", "GSM31335", "GSM31338", "GSM31340", "GSM31341", "GSM31303", "GSM31311", "GSM31310", "GSM31315" ], "type": "protocol", "id": "GDS869_2" }, { "dataset_id": "GDS869", "description": "moderate injury", "sample_id": [ "GSM31342", "GSM29449", "GSM31339" ], "type": "protocol", "id": "GDS869_3" }, { "dataset_id": "GDS869", "description": "severe injury", "sample_id": [ "GSM31380", "GSM31381", "GSM31385", "GSM31383", "GSM31359", "GSM31360", "GSM31353", "GSM31354", "GSM31390", "GSM31389", "GSM31395", "GSM31391", "GSM31343", "GSM31345", "GSM31350", "GSM31364", "GSM31365", "GSM31373" ], "type": "protocol", "id": "GDS869_4" }, { "dataset_id": "GDS869", "description": "0 h", "sample_id": [ "GSM31300", "GSM31306" ], "type": "time", "id": "GDS869_5" }, { "dataset_id": "GDS869", "description": "0.5 h", "sample_id": [ "GSM31280", "GSM31281", "GSM31329", "GSM31328", "GSM31330", "GSM31324" ], "type": "time", "id": "GDS869_6" }, { "dataset_id": "GDS869", "description": "4 h", "sample_id": [ "GSM31289", "GSM31287", "GSM31333", "GSM31334", "GSM31332", "GSM31337", "GSM31380", "GSM31381", "GSM31385", "GSM31383", "GSM31342", "GSM29449" ], "type": "time", "id": "GDS869_7" }, { "dataset_id": "GDS869", "description": "1 d", "sample_id": [ "GSM31273", "GSM31274", "GSM31318", "GSM31317", "GSM31316", "GSM31319", "GSM31320", "GSM31321", "GSM31339", "GSM31359", "GSM31360", "GSM31353", "GSM31354" ], "type": "time", "id": "GDS869_8" }, { "dataset_id": "GDS869", "description": "7 d", "sample_id": [ "GSM31286", "GSM31288", "GSM31335", "GSM31338", "GSM31340", "GSM31341", "GSM31390", "GSM31389", "GSM31395", "GSM31391" ], "type": "time", "id": "GDS869_9" }, { "dataset_id": "GDS869", "description": "14 d", "sample_id": [ "GSM31283", "GSM31278", "GSM31303", "GSM31311", "GSM31310", "GSM31315", "GSM31343", "GSM31345", "GSM31350" ], "type": "time", "id": "GDS869_10" }, { "dataset_id": "GDS869", "description": "28 d", "sample_id": [ "GSM31364", "GSM31365", "GSM31373" ], "type": "time", "id": "GDS869_11" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS869", "version": 1.0, "instances": "55", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS869.tab", "compression": "gz" } ], [ [ "GDS870.tab" ], { "title": "Spinal cord injury and regeneration time course: below T9 (RG-U34B)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord below thoracic vertebrae T9 at various time points up to 28 days post injury. Mild and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS870", "description": "control", "sample_id": [ "GSM4440", "GSM4441", "GSM31279", "GSM31282", "GSM4436", "GSM4437", "GSM4434", "GSM4435", "GSM4438", "GSM4439", "GSM31275", "GSM31667" ], "type": "protocol", "id": "GDS870_1" }, { "dataset_id": "GDS870", "description": "mild injury", "sample_id": [ "GSM31327", "GSM31331", "GSM31322", "GSM31326", "GSM31325", "GSM31323", "GSM4458", "GSM4459", "GSM4460", "GSM4461", "GSM31336", "GSM4454", "GSM4455", "GSM4456", "GSM4457", "GSM4462", "GSM4463", "GSM4464", "GSM4465", "GSM31301", "GSM31307", "GSM31312", "GSM31313" ], "type": "protocol", "id": "GDS870_2" }, { "dataset_id": "GDS870", "description": "severe injury", "sample_id": [ "GSM31375", "GSM31374", "GSM31379", "GSM31377", "GSM31362", "GSM31355", "GSM31352", "GSM31361", "GSM31393", "GSM31387", "GSM31386", "GSM31347", "GSM31348", "GSM31346", "GSM31372", "GSM31369", "GSM31370" ], "type": "protocol", "id": "GDS870_3" }, { "dataset_id": "GDS870", "description": "0 h", "sample_id": [ "GSM4440", "GSM4441" ], "type": "time", "id": "GDS870_4" }, { "dataset_id": "GDS870", "description": "0.5 h", "sample_id": [ "GSM31279", "GSM31282", "GSM31327", "GSM31331", "GSM31322", "GSM31326", "GSM31325", "GSM31323" ], "type": "time", "id": "GDS870_5" }, { "dataset_id": "GDS870", "description": "4 h", "sample_id": [ "GSM4436", "GSM4437", "GSM4458", "GSM4459", "GSM4460", "GSM4461", "GSM31375", "GSM31374", "GSM31379", "GSM31377", "GSM31336" ], "type": "time", "id": "GDS870_6" }, { "dataset_id": "GDS870", "description": "1 d", "sample_id": [ "GSM4434", "GSM4435", "GSM4454", "GSM4455", "GSM4456", "GSM4457", "GSM31362", "GSM31355", "GSM31352", "GSM31361" ], "type": "time", "id": "GDS870_7" }, { "dataset_id": "GDS870", "description": "7 d", "sample_id": [ "GSM4438", "GSM4439", "GSM4462", "GSM4463", "GSM4464", "GSM4465", "GSM31393", "GSM31387", "GSM31386" ], "type": "time", "id": "GDS870_8" }, { "dataset_id": "GDS870", "description": "14 d", "sample_id": [ "GSM31275", "GSM31667", "GSM31301", "GSM31307", "GSM31312", "GSM31313", "GSM31347", "GSM31348", "GSM31346" ], "type": "time", "id": "GDS870_9" }, { "dataset_id": "GDS870", "description": "28 d", "sample_id": [ "GSM31372", "GSM31369", "GSM31370" ], "type": "time", "id": "GDS870_10" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS870", "version": 1.0, "instances": "52", "variables": 7621, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS870.tab", "compression": "gz" } ], [ [ "GDS871.tab" ], { "title": "Spinal cord injury and regeneration time course: below T9 (RG-U34C)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord below thoracic vertebrae T9 at various time points up to 28 days post injury. Mild and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "43", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS871", "description": "control", "sample_id": [ "GSM31302", "GSM31304", "GSM6632", "GSM6633", "GSM6630", "GSM6631", "GSM6634", "GSM6635", "GSM31277", "GSM31276" ], "type": "protocol", "id": "GDS871_1" }, { "dataset_id": "GDS871", "description": "mild injury", "sample_id": [ "GSM6652", "GSM6653", "GSM6654", "GSM6655", "GSM6648", "GSM6649", "GSM6650", "GSM6651", "GSM6656", "GSM6657", "GSM6658", "GSM6659", "GSM31305", "GSM31314", "GSM31308", "GSM31309" ], "type": "protocol", "id": "GDS871_2" }, { "dataset_id": "GDS871", "description": "severe injury", "sample_id": [ "GSM31382", "GSM31376", "GSM31384", "GSM31378", "GSM31357", "GSM31363", "GSM31358", "GSM31356", "GSM31394", "GSM31388", "GSM31392", "GSM31351", "GSM31349", "GSM31344", "GSM31371", "GSM31368", "GSM31366" ], "type": "protocol", "id": "GDS871_3" }, { "dataset_id": "GDS871", "description": "0 h", "sample_id": [ "GSM31302", "GSM31304" ], "type": "time", "id": "GDS871_4" }, { "dataset_id": "GDS871", "description": "4 h", "sample_id": [ "GSM6632", "GSM6633", "GSM6652", "GSM6653", "GSM6654", "GSM6655", "GSM31382", "GSM31376", "GSM31384", "GSM31378" ], "type": "time", "id": "GDS871_5" }, { "dataset_id": "GDS871", "description": "1 d", "sample_id": [ "GSM6630", "GSM6631", "GSM6648", "GSM6649", "GSM6650", "GSM6651", "GSM31357", "GSM31363", "GSM31358", "GSM31356" ], "type": "time", "id": "GDS871_6" }, { "dataset_id": "GDS871", "description": "7 d", "sample_id": [ "GSM6634", "GSM6635", "GSM6656", "GSM6657", "GSM6658", "GSM6659", "GSM31394", "GSM31388", "GSM31392" ], "type": "time", "id": "GDS871_7" }, { "dataset_id": "GDS871", "description": "14 d", "sample_id": [ "GSM31277", "GSM31276", "GSM31305", "GSM31314", "GSM31308", "GSM31309", "GSM31351", "GSM31349", "GSM31344" ], "type": "time", "id": "GDS871_8" }, { "dataset_id": "GDS871", "description": "28 d", "sample_id": [ "GSM31371", "GSM31368", "GSM31366" ], "type": "time", "id": "GDS871_9" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS871", "version": 1.0, "instances": "43", "variables": 7585, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS871.tab", "compression": "gz" } ], [ [ "GDS872.tab" ], { "title": "Spinal cord injury and regeneration time course: above T9 (RG-U34A)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord above thoracic vertebrae T9 at various time points up to 28 days post injury. Mild, moderate and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "52", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS872", "description": "control", "sample_id": [ "GSM31414", "GSM31415", "GSM31405", "GSM31406", "GSM31413", "GSM31412", "GSM31401", "GSM31400", "GSM31411", "GSM31410", "GSM31397", "GSM31396" ], "type": "protocol", "id": "GDS872_1" }, { "dataset_id": "GDS872", "description": "mild injury", "sample_id": [ "GSM31443", "GSM31442", "GSM31439", "GSM31446", "GSM31447", "GSM31448", "GSM31449", "GSM31450", "GSM31432", "GSM31431", "GSM31434", "GSM31433", "GSM31451", "GSM31452", "GSM31455", "GSM31454", "GSM31423", "GSM31424", "GSM31425", "GSM31430" ], "type": "protocol", "id": "GDS872_2" }, { "dataset_id": "GDS872", "description": "severe injury", "sample_id": [ "GSM31483", "GSM31492", "GSM31491", "GSM31507", "GSM31473", "GSM31466", "GSM31469", "GSM31478", "GSM31500", "GSM31493", "GSM31497", "GSM31498", "GSM31457", "GSM31458", "GSM31459", "GSM31475", "GSM31482", "GSM31488" ], "type": "protocol", "id": "GDS872_3" }, { "dataset_id": "GDS872", "description": "moderate injury", "sample_id": [ "GSM31464", "GSM31453" ], "type": "protocol", "id": "GDS872_4" }, { "dataset_id": "GDS872", "description": "0 h", "sample_id": [ "GSM31414", "GSM31415" ], "type": "time", "id": "GDS872_5" }, { "dataset_id": "GDS872", "description": "0.5 h", "sample_id": [ "GSM31405", "GSM31406", "GSM31443", "GSM31442", "GSM31439", "GSM31446" ], "type": "time", "id": "GDS872_6" }, { "dataset_id": "GDS872", "description": "4 h", "sample_id": [ "GSM31413", "GSM31412", "GSM31447", "GSM31448", "GSM31449", "GSM31450", "GSM31464", "GSM31453", "GSM31483", "GSM31492", "GSM31491", "GSM31507" ], "type": "time", "id": "GDS872_7" }, { "dataset_id": "GDS872", "description": "1 d", "sample_id": [ "GSM31401", "GSM31400", "GSM31432", "GSM31431", "GSM31434", "GSM31433", "GSM31473", "GSM31466", "GSM31469", "GSM31478" ], "type": "time", "id": "GDS872_8" }, { "dataset_id": "GDS872", "description": "7 d", "sample_id": [ "GSM31411", "GSM31410", "GSM31451", "GSM31452", "GSM31500", "GSM31493", "GSM31497", "GSM31498", "GSM31455", "GSM31454" ], "type": "time", "id": "GDS872_9" }, { "dataset_id": "GDS872", "description": "14 d", "sample_id": [ "GSM31397", "GSM31396", "GSM31423", "GSM31424", "GSM31425", "GSM31430", "GSM31457", "GSM31458", "GSM31459" ], "type": "time", "id": "GDS872_10" }, { "dataset_id": "GDS872", "description": "28 d", "sample_id": [ "GSM31475", "GSM31482", "GSM31488" ], "type": "time", "id": "GDS872_11" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS872", "version": 1.0, "instances": "52", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS872.tab", "compression": "gz" } ], [ [ "GDS873.tab" ], { "title": "Spinal cord injury and regeneration time course: above T9 (RG-U34B)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord above thoracic vertebrae T9 at various time points up to 28 days post injury. Mild and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL86", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8791", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "47", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS873", "description": "control", "sample_id": [ "GSM4432", "GSM31417", "GSM31408", "GSM31404", "GSM4428", "GSM4429", "GSM4426", "GSM4427", "GSM4430", "GSM4431", "GSM31398", "GSM31402" ], "type": "protocol", "id": "GDS873_1" }, { "dataset_id": "GDS873", "description": "mild injury", "sample_id": [ "GSM31435", "GSM31438", "GSM31436", "GSM31444", "GSM4446", "GSM4447", "GSM4448", "GSM4449", "GSM4442", "GSM4443", "GSM4444", "GSM4445", "GSM4450", "GSM4451", "GSM4452", "GSM4453", "GSM31419", "GSM31421", "GSM31427", "GSM31426" ], "type": "protocol", "id": "GDS873_2" }, { "dataset_id": "GDS873", "description": "severe injury", "sample_id": [ "GSM31486", "GSM31484", "GSM31505", "GSM31503", "GSM31468", "GSM31467", "GSM31465", "GSM31474", "GSM31495", "GSM31494", "GSM31501", "GSM31461", "GSM31460", "GSM31463", "GSM31490" ], "type": "protocol", "id": "GDS873_3" }, { "dataset_id": "GDS873", "description": "0 h", "sample_id": [ "GSM4432", "GSM31417" ], "type": "time", "id": "GDS873_4" }, { "dataset_id": "GDS873", "description": "0.5 h", "sample_id": [ "GSM31408", "GSM31404", "GSM31436", "GSM31444", "GSM31435", "GSM31438" ], "type": "time", "id": "GDS873_5" }, { "dataset_id": "GDS873", "description": "4 h", "sample_id": [ "GSM4428", "GSM4429", "GSM4446", "GSM4447", "GSM4448", "GSM4449", "GSM31486", "GSM31484", "GSM31505", "GSM31503" ], "type": "time", "id": "GDS873_6" }, { "dataset_id": "GDS873", "description": "1 d", "sample_id": [ "GSM4426", "GSM4427", "GSM4442", "GSM4443", "GSM4444", "GSM4445", "GSM31468", "GSM31467", "GSM31465", "GSM31474" ], "type": "time", "id": "GDS873_7" }, { "dataset_id": "GDS873", "description": "7 d", "sample_id": [ "GSM4430", "GSM4431", "GSM4450", "GSM4451", "GSM4452", "GSM4453", "GSM31495", "GSM31494", "GSM31501" ], "type": "time", "id": "GDS873_8" }, { "dataset_id": "GDS873", "description": "14 d", "sample_id": [ "GSM31398", "GSM31402", "GSM31419", "GSM31421", "GSM31427", "GSM31426", "GSM31461", "GSM31460", "GSM31463" ], "type": "time", "id": "GDS873_9" }, { "dataset_id": "GDS873", "description": "28 d", "sample_id": [ "GSM31490" ], "type": "time", "id": "GDS873_10" } ], "taxid": "10116", "genes": 7618, "aggregation_function": "mean", "name": "GDS873", "version": 1.0, "instances": "47", "variables": 7621, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS873.tab", "compression": "gz" } ], [ [ "GDS874.tab" ], { "title": "Spinal cord injury and regeneration time course: above T9 (RG-U34C)", "description": "Temporal analysis of molecular mechanisms of spinal cord degeneration and repair. Analyzed spinal cord above thoracic vertebrae T9 at various time points up to 28 days post injury. Mild and severe injury examined.", "type": "Expression profiling by array", "pubmed_id": "12666113", "platform": "GPL87", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8789", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "48", "value_type": "count", "reference_series": "GSE464", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS874", "description": "control", "sample_id": [ "GSM31418", "GSM31416", "GSM31409", "GSM31407", "GSM6626", "GSM6627", "GSM6624", "GSM6625", "GSM6628", "GSM6629", "GSM31403", "GSM31399" ], "type": "protocol", "id": "GDS874_1" }, { "dataset_id": "GDS874", "description": "mild injury", "sample_id": [ "GSM31441", "GSM31437", "GSM31440", "GSM31445", "GSM6640", "GSM6641", "GSM6642", "GSM6643", "GSM6636", "GSM6637", "GSM6638", "GSM6639", "GSM6644", "GSM6645", "GSM6646", "GSM6647", "GSM31422", "GSM31420", "GSM31429", "GSM31428" ], "type": "protocol", "id": "GDS874_2" }, { "dataset_id": "GDS874", "description": "severe injury", "sample_id": [ "GSM31487", "GSM31485", "GSM31506", "GSM31504", "GSM31471", "GSM31472", "GSM31481", "GSM31479", "GSM31496", "GSM31499", "GSM31502", "GSM31456", "GSM31462", "GSM31470", "GSM31480", "GSM31489" ], "type": "protocol", "id": "GDS874_3" }, { "dataset_id": "GDS874", "description": "0 h", "sample_id": [ "GSM31418", "GSM31416" ], "type": "time", "id": "GDS874_4" }, { "dataset_id": "GDS874", "description": "0.5 h", "sample_id": [ "GSM31409", "GSM31407", "GSM31441", "GSM31437", "GSM31440", "GSM31445" ], "type": "time", "id": "GDS874_5" }, { "dataset_id": "GDS874", "description": "4 h", "sample_id": [ "GSM6626", "GSM6627", "GSM6640", "GSM6641", "GSM6642", "GSM6643", "GSM31487", "GSM31485", "GSM31506", "GSM31504" ], "type": "time", "id": "GDS874_6" }, { "dataset_id": "GDS874", "description": "1 d", "sample_id": [ "GSM6624", "GSM6625", "GSM6636", "GSM6637", "GSM6638", "GSM6639", "GSM31471", "GSM31472", "GSM31481", "GSM31479" ], "type": "time", "id": "GDS874_7" }, { "dataset_id": "GDS874", "description": "7 d", "sample_id": [ "GSM6628", "GSM6629", "GSM6644", "GSM6645", "GSM6646", "GSM6647", "GSM31496", "GSM31499", "GSM31502" ], "type": "time", "id": "GDS874_8" }, { "dataset_id": "GDS874", "description": "14 d", "sample_id": [ "GSM31403", "GSM31399", "GSM31422", "GSM31420", "GSM31429", "GSM31428", "GSM31456", "GSM31462", "GSM31470" ], "type": "time", "id": "GDS874_9" }, { "dataset_id": "GDS874", "description": "28 d", "sample_id": [ "GSM31480", "GSM31489" ], "type": "time", "id": "GDS874_10" } ], "taxid": "10116", "genes": 7582, "aggregation_function": "mean", "name": "GDS874", "version": 1.0, "instances": "48", "variables": 7585, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS874.tab", "compression": "gz" } ], [ [ "GDS877.tab" ], { "title": "Alveolar type I and type II cell comparison", "description": "Expression profiling of freshly isolated alveolar type I (TI) and type II (TII) cells, and cultured alveolar TII cells grown in vitro for 7 days. Results provide insight into the functional differences between TI and TII cells.", "type": "Expression profiling by array", "pubmed_id": "15447939", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "transformed count", "reference_series": "GSE1567", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS877", "description": "alveolar type I", "sample_id": [ "GSM26977", "GSM26979", "GSM26980", "GSM26981" ], "type": "cell type", "id": "GDS877_1" }, { "dataset_id": "GDS877", "description": "alveolar type II", "sample_id": [ "GSM26970", "GSM26971", "GSM26972", "GSM26973", "GSM26974", "GSM26975", "GSM26976" ], "type": "cell type", "id": "GDS877_2" }, { "dataset_id": "GDS877", "description": "freshly isolated", "sample_id": [ "GSM26970", "GSM26971", "GSM26972", "GSM26973", "GSM26977", "GSM26979", "GSM26980", "GSM26981" ], "type": "protocol", "id": "GDS877_3" }, { "dataset_id": "GDS877", "description": "cultured", "sample_id": [ "GSM26974", "GSM26975", "GSM26976" ], "type": "protocol", "id": "GDS877_4" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS877", "version": 1.0, "instances": "11", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS877.tab", "compression": "gz" } ], [ [ "GDS878.tab" ], { "title": "MPSS analysis of BLK CL.4 and liver cells", "description": "Massively parallel signature sequencing (MPSS) analysis of C57BL/6J BLK CL.4 cells and liver cells. Total mRNA, nuclear mRNA and post-nuclear mRNA examined.", "type": "Expression profiling by MPSS", "pubmed_id": "", "platform": "GPL1010", "platform_organism": "Mus musculus", "platform_technology_type": "MPSS", "feature_count": "71752", "sample_organism": "Mus musculus", "sample_type": "MPSS", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1067", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS878", "description": "BLK CL.4", "sample_id": [ "GSM17228", "GSM17241", "GSM17242" ], "type": "cell type", "id": "GDS878_1" }, { "dataset_id": "GDS878", "description": "liver", "sample_id": [ "GSM17243", "GSM17244", "GSM17245" ], "type": "cell type", "id": "GDS878_2" }, { "dataset_id": "GDS878", "description": "total RNA", "sample_id": [ "GSM17228", "GSM17243" ], "type": "protocol", "id": "GDS878_3" }, { "dataset_id": "GDS878", "description": "nuclear RNA", "sample_id": [ "GSM17241", "GSM17244" ], "type": "protocol", "id": "GDS878_4" }, { "dataset_id": "GDS878", "description": "post-nuclear RNA", "sample_id": [ "GSM17242", "GSM17245" ], "type": "protocol", "id": "GDS878_5" } ], "taxid": "10090", "genes": 39220, "aggregation_function": "mean", "name": "GDS878", "version": 1.0, "instances": "6", "variables": 39223, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS878.tab", "compression": "gz" } ], [ [ "GDS879.tab" ], { "title": "X-linked hypophosphatemia and low phosphate diet", "description": "Examination of kidney from normal or X-linked hypophosphatemic (Hyp) 5 week old mice fed either control (1.0% P) or low phosphate diet (0.03% P) for 3 or 5 days. Results provide insight into mechanism of renal adaptation to low phosphate diet.", "type": "Expression profiling by array", "pubmed_id": "15054142", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE868", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS879", "description": "normal", "sample_id": [ "GSM13451", "GSM13452", "GSM13455", "GSM13456", "GSM13461", "GSM13462", "GSM13465", "GSM13466", "GSM13473", "GSM13474" ], "type": "genotype/variation", "id": "GDS879_1" }, { "dataset_id": "GDS879", "description": "Hyp", "sample_id": [ "GSM13453", "GSM13454", "GSM13457", "GSM13458", "GSM13459", "GSM13460", "GSM13463", "GSM13464", "GSM13468", "GSM13471" ], "type": "genotype/variation", "id": "GDS879_2" }, { "dataset_id": "GDS879", "description": "control diet - 3d", "sample_id": [ "GSM13461", "GSM13463", "GSM13465", "GSM13468" ], "type": "protocol", "id": "GDS879_3" }, { "dataset_id": "GDS879", "description": "control diet - 5d", "sample_id": [ "GSM13451", "GSM13453", "GSM13455", "GSM13457", "GSM13459", "GSM13473" ], "type": "protocol", "id": "GDS879_4" }, { "dataset_id": "GDS879", "description": "low P diet - 3d", "sample_id": [ "GSM13462", "GSM13464", "GSM13466", "GSM13471" ], "type": "protocol", "id": "GDS879_5" }, { "dataset_id": "GDS879", "description": "low P diet - 5d", "sample_id": [ "GSM13452", "GSM13454", "GSM13456", "GSM13458", "GSM13460", "GSM13474" ], "type": "protocol", "id": "GDS879_6" }, { "dataset_id": "GDS879", "description": "male", "sample_id": [ "GSM13451", "GSM13452", "GSM13453", "GSM13454", "GSM13459", "GSM13460", "GSM13461", "GSM13462", "GSM13463", "GSM13464", "GSM13473", "GSM13474" ], "type": "gender", "id": "GDS879_7" }, { "dataset_id": "GDS879", "description": "female", "sample_id": [ "GSM13455", "GSM13456", "GSM13457", "GSM13458", "GSM13465", "GSM13466", "GSM13468", "GSM13471" ], "type": "gender", "id": "GDS879_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS879", "version": 1.0, "instances": "20", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS879.tab", "compression": "gz" } ], [ [ "GDS88.tab" ], { "title": "Cancer cell lines (10k_print2)", "description": "Analysis of cell lines used in the National Cancer Institute's screen for anti-cancer drugs. Gene expression is linked to phenotypic properties and drug sensitivity profiles of the cell lines.", "type": "Expression profiling by array", "pubmed_id": "10700174", "platform": "GPL169", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9984", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE59", "order": "none", "update_date": "Apr 08 2003", "subsets": [ { "dataset_id": "GDS88", "description": "melanoma", "sample_id": [ "GSM2170" ], "type": "disease state", "id": "GDS88_1" }, { "dataset_id": "GDS88", "description": "prostate cancer", "sample_id": [ "GSM2171" ], "type": "disease state", "id": "GDS88_2" }, { "dataset_id": "GDS88", "description": "leukemia", "sample_id": [ "GSM2172", "GSM2173" ], "type": "disease state", "id": "GDS88_3" }, { "dataset_id": "GDS88", "description": "ovarian cancer", "sample_id": [ "GSM2174" ], "type": "disease state", "id": "GDS88_4" } ], "taxid": "9606", "genes": 9209, "aggregation_function": "mean", "name": "GDS88", "version": 1.0, "instances": "5", "variables": 9211, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS88.tab", "compression": "gz" } ], [ [ "GDS880.tab" ], { "title": "Visceral adiposity resulting from poor fetal nutrition", "description": "Expression profiling of visceral adipose tissue of 130 day old adult male Wistars that had been subjected to poor nutrition during fetal development caused by maternal protein restriction. Results indicate that poor fetal nutrition predisposes to visceral obesity.", "type": "Expression profiling by array", "pubmed_id": "15562247", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1813", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS880", "description": "normal fetal nutrition", "sample_id": [ "GSM31627", "GSM31628" ], "type": "growth protocol", "id": "GDS880_1" }, { "dataset_id": "GDS880", "description": "protein poor fetal nutrition", "sample_id": [ "GSM31629", "GSM31630" ], "type": "growth protocol", "id": "GDS880_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS880", "version": 1.0, "instances": "4", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS880.tab", "compression": "gz" } ], [ [ "GDS881.tab" ], { "title": "Breast cancer and selective estrogen receptor modulators", "description": "Analysis of gene stimulation and inhibition by the selective estrogen receptor modulators (SERMs) trans-hydroxytamoxifen (TOT) and raloxifene (Ral) or ICI 182,780 (ICI) and by estradiol (E2) in estrogen receptor-containing MCF-7 breast cancer cells. Cells were treated for 8 or 48 hours.", "type": "Expression profiling by array", "pubmed_id": "14973112", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE848", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS881", "description": "control", "sample_id": [ "GSM13097", "GSM13098" ], "type": "agent", "id": "GDS881_1" }, { "dataset_id": "GDS881", "description": "E2", "sample_id": [ "GSM13099", "GSM13138", "GSM13139", "GSM13140" ], "type": "agent", "id": "GDS881_2" }, { "dataset_id": "GDS881", "description": "E2/ICI", "sample_id": [ "GSM15900", "GSM15901", "GSM15902", "GSM15903" ], "type": "agent", "id": "GDS881_3" }, { "dataset_id": "GDS881", "description": "E2/Ral", "sample_id": [ "GSM15904", "GSM15905", "GSM15906", "GSM15907" ], "type": "agent", "id": "GDS881_4" }, { "dataset_id": "GDS881", "description": "E2/TOT", "sample_id": [ "GSM15908", "GSM15909", "GSM15910", "GSM15911" ], "type": "agent", "id": "GDS881_5" }, { "dataset_id": "GDS881", "description": "control", "sample_id": [ "GSM13097", "GSM13098" ], "type": "time", "id": "GDS881_6" }, { "dataset_id": "GDS881", "description": "8 h", "sample_id": [ "GSM13099", "GSM13138", "GSM15900", "GSM15901", "GSM15904", "GSM15905", "GSM15908", "GSM15909" ], "type": "time", "id": "GDS881_7" }, { "dataset_id": "GDS881", "description": "48 h", "sample_id": [ "GSM13139", "GSM13140", "GSM15902", "GSM15903", "GSM15906", "GSM15907", "GSM15910", "GSM15911" ], "type": "time", "id": "GDS881_8" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS881", "version": 1.0, "instances": "18", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS881.tab", "compression": "gz" } ], [ [ "GDS882.tab" ], { "title": "Neuromedin U effect on type-2 Th cells: time course", "description": "Analysis of type-2 Th cell line D10.G4.1 after treatment with 10 nM neuromedin U (NmU) for various times up to 12 hours. NmU is a neuropeptide that binds to its receptor on D10.G4.1 cells, eliciting the release of cytokines. This effect suggests a role for NmU in immune response and inflammation.", "type": "Expression profiling by array", "pubmed_id": "15585845", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "31", "value_type": "count", "reference_series": "GSE1791", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS882", "description": "untreated", "sample_id": [ "GSM30904", "GSM30905", "GSM30906", "GSM30907", "GSM30912", "GSM30913", "GSM30914", "GSM30915", "GSM30919", "GSM30920", "GSM30921", "GSM30922", "GSM30927", "GSM30928", "GSM30929", "GSM30930" ], "type": "agent", "id": "GDS882_1" }, { "dataset_id": "GDS882", "description": "neuromedin U", "sample_id": [ "GSM30908", "GSM30909", "GSM30910", "GSM30911", "GSM30916", "GSM30917", "GSM30918", "GSM30923", "GSM30924", "GSM30925", "GSM30926", "GSM30931", "GSM30932", "GSM30933", "GSM30934" ], "type": "agent", "id": "GDS882_2" }, { "dataset_id": "GDS882", "description": "0.75 h", "sample_id": [ "GSM30904", "GSM30905", "GSM30906", "GSM30907", "GSM30908", "GSM30909", "GSM30910", "GSM30911" ], "type": "time", "id": "GDS882_3" }, { "dataset_id": "GDS882", "description": "3 h", "sample_id": [ "GSM30912", "GSM30913", "GSM30914", "GSM30915", "GSM30916", "GSM30917", "GSM30918" ], "type": "time", "id": "GDS882_4" }, { "dataset_id": "GDS882", "description": "6 h", "sample_id": [ "GSM30919", "GSM30920", "GSM30921", "GSM30922", "GSM30923", "GSM30924", "GSM30925", "GSM30926" ], "type": "time", "id": "GDS882_5" }, { "dataset_id": "GDS882", "description": "12 h", "sample_id": [ "GSM30927", "GSM30928", "GSM30929", "GSM30930", "GSM30931", "GSM30932", "GSM30933", "GSM30934" ], "type": "time", "id": "GDS882_6" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS882", "version": 1.0, "instances": "31", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS882.tab", "compression": "gz" } ], [ [ "GDS883.tab" ], { "title": "Lipopolysaccharide-induced gene expression mediated by Schistosome soluble egg antigen", "description": "IL10-/- dendritic cells (DC) pulsed for 6 hours with soluble antigen molecules from the eggs of the helminth parasite Schistosoma mansoni (SEA), lipopolysaccharide (LPS), or SEA/LPS to compare changes in LPS-induced gene expression mediated by SEA, and the anti-inflammatory properties of SEA.", "type": "Expression profiling by array", "pubmed_id": "15585871", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1382", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS883", "description": "control", "sample_id": [ "GSM22605" ], "type": "agent", "id": "GDS883_1" }, { "dataset_id": "GDS883", "description": "SEA", "sample_id": [ "GSM22607" ], "type": "agent", "id": "GDS883_2" }, { "dataset_id": "GDS883", "description": "LPS", "sample_id": [ "GSM22609" ], "type": "agent", "id": "GDS883_3" }, { "dataset_id": "GDS883", "description": "SEA/LPS", "sample_id": [ "GSM22611" ], "type": "agent", "id": "GDS883_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS883", "version": 1.0, "instances": "4", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS883.tab", "compression": "gz" } ], [ [ "GDS884.tab" ], { "title": "Estradiol effect on osteosarcoma cells expressing estrogen receptor alpha or beta: time course", "description": "Expression profiling of U2OS osteosarcoma cells after treatment with 17beta-estradiol (E2) for various lengths of time up to 48 hours. U2OS transfected with either estrogen receptor (ER) alpha or beta. Results identify signaling pathways in bone regulated by E2 through ERalpha and ERbeta.", "type": "Expression profiling by array", "pubmed_id": "15033914", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "20", "value_type": "count", "reference_series": "GSE1153", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS884", "description": "ERalpha transfected", "sample_id": [ "GSM19191", "GSM19291", "GSM19292", "GSM19293", "GSM19294", "GSM19295", "GSM19296", "GSM19297", "GSM19298", "GSM19299" ], "type": "cell line", "id": "GDS884_1" }, { "dataset_id": "GDS884", "description": "ERbeta transfected", "sample_id": [ "GSM21906", "GSM21907", "GSM21908", "GSM21909", "GSM21910", "GSM21911", "GSM21912", "GSM21913", "GSM21914", "GSM21915" ], "type": "cell line", "id": "GDS884_2" }, { "dataset_id": "GDS884", "description": "untreated", "sample_id": [ "GSM19191", "GSM19291", "GSM21906", "GSM21907" ], "type": "agent", "id": "GDS884_3" }, { "dataset_id": "GDS884", "description": "estradiol", "sample_id": [ "GSM19292", "GSM19293", "GSM19294", "GSM19295", "GSM19296", "GSM19297", "GSM19298", "GSM19299", "GSM21908", "GSM21909", "GSM21910", "GSM21911", "GSM21912", "GSM21913", "GSM21914", "GSM21915" ], "type": "agent", "id": "GDS884_4" }, { "dataset_id": "GDS884", "description": "0 h", "sample_id": [ "GSM19191", "GSM19291", "GSM21906", "GSM21907" ], "type": "time", "id": "GDS884_5" }, { "dataset_id": "GDS884", "description": "4 h", "sample_id": [ "GSM19292", "GSM19293", "GSM21908", "GSM21909" ], "type": "time", "id": "GDS884_6" }, { "dataset_id": "GDS884", "description": "8 h", "sample_id": [ "GSM19294", "GSM19295", "GSM21910", "GSM21911" ], "type": "time", "id": "GDS884_7" }, { "dataset_id": "GDS884", "description": "24 h", "sample_id": [ "GSM19296", "GSM19297", "GSM21912", "GSM21913" ], "type": "time", "id": "GDS884_8" }, { "dataset_id": "GDS884", "description": "48 h", "sample_id": [ "GSM19298", "GSM19299", "GSM21914", "GSM21915" ], "type": "time", "id": "GDS884_9" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS884", "version": 1.0, "instances": "20", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS884.tab", "compression": "gz" } ], [ [ "GDS885.tab" ], { "title": "Tumor cell response to topoisomerase poison camptothecin", "description": "HeLa tumor cells treated with 10 uM topoisomerase poison camptothecin (CPT) for 8 hours. This dose and time are sufficient to induce rapid apoptosis. Results identify potential targets for adjuvant cancer therapy.", "type": "Expression profiling by array", "pubmed_id": "15026349", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "7", "value_type": "count", "reference_series": "GSE1417", "order": "none", "update_date": "Dec 28 2004", "subsets": [ { "dataset_id": "GDS885", "description": "control", "sample_id": [ "GSM23372", "GSM23373", "GSM23377", "GSM23378" ], "type": "agent", "id": "GDS885_1" }, { "dataset_id": "GDS885", "description": "campthotecin", "sample_id": [ "GSM23382", "GSM23383", "GSM23384" ], "type": "agent", "id": "GDS885_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS885", "version": 1.0, "instances": "7", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS885.tab", "compression": "gz" } ], [ [ "GDS887.tab" ], { "title": "Diabetic nephropathy: models of type 1 and type 2 diabetes", "description": "Examination of kidneys from streptozotocin-induced diabetic C57BL/6J and db/db animals, which are models for type I and type II diabetes, respectively. Results identify HSD3-beta 4 and OPN as classifiers for the mesangial matrix expansion phenotype, an indicator for end-stage renal disease.", "type": "Expression profiling by array", "pubmed_id": "14988265", "platform": "GPL409", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "9568", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "50", "value_type": "log ratio", "reference_series": "GSE710", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS887", "description": "C57BL/6J", "sample_id": [ "GSM9164", "GSM9165", "GSM9166", "GSM9167", "GSM9168", "GSM9169", "GSM9170", "GSM9171", "GSM9172", "GSM9173" ], "type": "genotype/variation", "id": "GDS887_1" }, { "dataset_id": "GDS887", "description": "C57BKsJ Lepr db/m", "sample_id": [ "GSM9059", "GSM9069", "GSM9070", "GSM9071", "GSM9072", "GSM9073", "GSM9074", "GSM9075", "GSM9076", "GSM10401" ], "type": "genotype/variation", "id": "GDS887_2" }, { "dataset_id": "GDS887", "description": "C57BKsJ Lepr db/db", "sample_id": [ "GSM9077", "GSM9078", "GSM9079", "GSM9080", "GSM9081", "GSM9082", "GSM9083", "GSM9084", "GSM9085", "GSM9086", "GSM9087", "GSM9088", "GSM9089", "GSM9090", "GSM9091", "GSM9092", "GSM9143", "GSM9144", "GSM9145", "GSM9146", "GSM9147", "GSM9148", "GSM9149", "GSM9150", "GSM9151", "GSM9152", "GSM9153", "GSM9154", "GSM9155", "GSM9156" ], "type": "genotype/variation", "id": "GDS887_3" }, { "dataset_id": "GDS887", "description": "no treatment", "sample_id": [ "GSM9059", "GSM9069", "GSM9070", "GSM9071", "GSM9072", "GSM9073", "GSM9074", "GSM9075", "GSM9076", "GSM9077", "GSM9078", "GSM9079", "GSM9080", "GSM9081", "GSM9082", "GSM9083", "GSM9084", "GSM9085", "GSM9086", "GSM9087", "GSM9088", "GSM9089", "GSM9090", "GSM9091", "GSM9092", "GSM9143", "GSM9144", "GSM9145", "GSM9146", "GSM9147", "GSM9148", "GSM9149", "GSM9150", "GSM9151", "GSM9152", "GSM9153", "GSM9154", "GSM9155", "GSM9156", "GSM9169", "GSM9170", "GSM9171", "GSM9172", "GSM9173", "GSM10401" ], "type": "agent", "id": "GDS887_4" }, { "dataset_id": "GDS887", "description": "streptozotocin", "sample_id": [ "GSM9164", "GSM9165", "GSM9166", "GSM9167", "GSM9168" ], "type": "agent", "id": "GDS887_5" }, { "dataset_id": "GDS887", "description": "non-diabetic", "sample_id": [ "GSM9059", "GSM9069", "GSM9070", "GSM9071", "GSM9072", "GSM9073", "GSM9074", "GSM9075", "GSM9076", "GSM9169", "GSM9170", "GSM9171", "GSM9172", "GSM9173", "GSM10401" ], "type": "disease state", "id": "GDS887_6" }, { "dataset_id": "GDS887", "description": "type 1 diabetes", "sample_id": [ "GSM9164", "GSM9165", "GSM9166", "GSM9167", "GSM9168" ], "type": "disease state", "id": "GDS887_7" }, { "dataset_id": "GDS887", "description": "type 2 diabetes", "sample_id": [ "GSM9077", "GSM9078", "GSM9079", "GSM9080", "GSM9081", "GSM9082", "GSM9083", "GSM9084", "GSM9085", "GSM9086", "GSM9087", "GSM9088", "GSM9089", "GSM9090", "GSM9091", "GSM9092", "GSM9143", "GSM9144", "GSM9145", "GSM9146", "GSM9147", "GSM9148", "GSM9149", "GSM9150", "GSM9151", "GSM9152", "GSM9153", "GSM9154", "GSM9155", "GSM9156" ], "type": "disease state", "id": "GDS887_8" } ], "taxid": "10090", "genes": 8083, "aggregation_function": "mean", "name": "GDS887", "version": 1.0, "instances": "50", "variables": 8087, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS887.tab", "compression": "gz" } ], [ [ "GDS890.tab" ], { "title": "Schwann cell development: neural crest stem cells to mature Schwann cells", "description": "Expression profiling of neural crest stem cells at embryonic day (E) 9.5 and developing Schwann cells (SC) at E12, E14, E16, E18, and mature SCs at birth. Cells isolated by FACS from proteolipid-GFP transgenics. Results provide insight into stem cell regulation and Schwann cell development.", "type": "Expression profiling by array", "pubmed_id": "15014110", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE972", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS890", "description": "neural crest stem cells", "sample_id": [ "GSM15370", "GSM15371", "GSM15372" ], "type": "development stage", "id": "GDS890_1" }, { "dataset_id": "GDS890", "description": "Schwann cell percursors", "sample_id": [ "GSM15373", "GSM15374", "GSM15375", "GSM15376", "GSM15377", "GSM15378", "GSM15379", "GSM15380", "GSM15381", "GSM15382", "GSM15383", "GSM15384", "GSM15385" ], "type": "development stage", "id": "GDS890_2" }, { "dataset_id": "GDS890", "description": "mature Schwann cell", "sample_id": [ "GSM15386", "GSM15387", "GSM15388" ], "type": "development stage", "id": "GDS890_3" }, { "dataset_id": "GDS890", "description": "E9.5", "sample_id": [ "GSM15370", "GSM15371", "GSM15372" ], "type": "age", "id": "GDS890_4" }, { "dataset_id": "GDS890", "description": "E12", "sample_id": [ "GSM15373", "GSM15374", "GSM15375" ], "type": "age", "id": "GDS890_5" }, { "dataset_id": "GDS890", "description": "E14", "sample_id": [ "GSM15376", "GSM15377", "GSM15378" ], "type": "age", "id": "GDS890_6" }, { "dataset_id": "GDS890", "description": "E16", "sample_id": [ "GSM15379", "GSM15380", "GSM15381", "GSM15382" ], "type": "age", "id": "GDS890_7" }, { "dataset_id": "GDS890", "description": "E18", "sample_id": [ "GSM15383", "GSM15384", "GSM15385" ], "type": "age", "id": "GDS890_8" }, { "dataset_id": "GDS890", "description": "birth", "sample_id": [ "GSM15386", "GSM15387", "GSM15388" ], "type": "age", "id": "GDS890_9" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS890", "version": 1.0, "instances": "19", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS890.tab", "compression": "gz" } ], [ [ "GDS891.tab" ], { "title": "Synaptic acetylcholinesterase overexpression in prefrontal cortex", "description": "Gene expression profiles from prefrontal cortex of female FVB/N mice and female mice overexpressing human synaptic acetylcholinesterase (AChE).", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE937", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS891", "description": "control", "sample_id": [ "GSM14620", "GSM14621" ], "type": "genotype/variation", "id": "GDS891_1" }, { "dataset_id": "GDS891", "description": "high AChE", "sample_id": [ "GSM14622", "GSM14623" ], "type": "genotype/variation", "id": "GDS891_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS891", "version": 1.0, "instances": "4", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS891.tab", "compression": "gz" } ], [ [ "GDS892.tab" ], { "title": "GATA3 ectopic expression in 293T cells", "description": "Examination of 293T epithelial kidney cells stably transfected with either wild type GATA3 or R367L mutant GATA3. GATA3 can be highly expressed in breast tumors. GATA3 variants may contribute to tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "15361840", "platform": "GPL737", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE841", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS892", "description": "293T wild type GATA3", "sample_id": [ "GSM13003" ], "type": "cell line", "id": "GDS892_1" }, { "dataset_id": "GDS892", "description": "293T mutant GATA3", "sample_id": [ "GSM13006" ], "type": "cell line", "id": "GDS892_2" } ], "taxid": "9606", "genes": 16280, "aggregation_function": "mean", "name": "GDS892", "version": 1.0, "instances": "2", "variables": 16282, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS892.tab", "compression": "gz" } ], [ [ "GDS893.tab" ], { "title": "GATA3 ectopic expression in 293T cells (dye-swap)", "description": "Examination of 293T epithelial kidney cells stably transfected with either wild type GATA3 or R367L mutant GATA3. GATA3 can be highly expressed in breast tumors. GATA3 variants may contribute to tumorigenesis.", "type": "Expression profiling by array", "pubmed_id": "15361840", "platform": "GPL737", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "2", "value_type": "log ratio", "reference_series": "GSE841", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS893", "description": "293T wild type GATA3", "sample_id": [ "GSM13004" ], "type": "cell line", "id": "GDS893_1" }, { "dataset_id": "GDS893", "description": "293T mutant GATA3", "sample_id": [ "GSM13005" ], "type": "cell line", "id": "GDS893_2" } ], "taxid": "9606", "genes": 16280, "aggregation_function": "mean", "name": "GDS893", "version": 1.0, "instances": "2", "variables": 16282, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS893.tab", "compression": "gz" } ], [ [ "GDS894.tab" ], { "title": "Skeletal muscle response to exercise and circadian rhythms", "description": "Analysis of effects of resistance exercise (RE) and time of day in skeletal muscle. Biopsies of male vastus lateralis muscle obtained 6 and 18 hours after acute RE, or no RE. Results suggest that RE may directly modulate circadian rhythms in skeletal muscle.", "type": "Expression profiling by array", "pubmed_id": "14519196", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1832", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS894", "description": "6 h (8 pm)", "sample_id": [ "GSM32066", "GSM32097", "GSM32098", "GSM32099", "GSM32100", "GSM32101", "GSM32102", "GSM32103" ], "type": "time", "id": "GDS894_1" }, { "dataset_id": "GDS894", "description": "18 h (8 am)", "sample_id": [ "GSM32104", "GSM32105", "GSM32106", "GSM32107", "GSM32108", "GSM32109", "GSM32110" ], "type": "time", "id": "GDS894_2" }, { "dataset_id": "GDS894", "description": "nonexercised", "sample_id": [ "GSM32066", "GSM32097", "GSM32098", "GSM32099", "GSM32104", "GSM32105", "GSM32106", "GSM32107" ], "type": "stress", "id": "GDS894_3" }, { "dataset_id": "GDS894", "description": "exercised", "sample_id": [ "GSM32100", "GSM32101", "GSM32102", "GSM32103", "GSM32108", "GSM32109", "GSM32110" ], "type": "stress", "id": "GDS894_4" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS894", "version": 1.0, "instances": "15", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS894.tab", "compression": "gz" } ], [ [ "GDS899.tab" ], { "title": "Aquaporin-1 knockout kidney inner medulla profile (I)", "description": "Gene expression profiles of kidney inner medulla from aquaporin-1 (AQP1) null and wild type mice compared against a wild type common reference. AQP1 null mice manifest a severe defect in urinary concentrating ability.", "type": "Expression profiling by array", "pubmed_id": "15507545", "platform": "GPL1104", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15600", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE1298", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS899", "description": "wild type", "sample_id": [ "GSM21266", "GSM21276", "GSM21279" ], "type": "genotype/variation", "id": "GDS899_1" }, { "dataset_id": "GDS899", "description": "AQP1-/-", "sample_id": [ "GSM21270", "GSM21273", "GSM21282" ], "type": "genotype/variation", "id": "GDS899_2" } ], "taxid": "10090", "genes": 13165, "aggregation_function": "mean", "name": "GDS899", "version": 1.0, "instances": "6", "variables": 13167, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS899.tab", "compression": "gz" } ], [ [ "GDS900.tab" ], { "title": "Aquaporin-1 knockout kidney inner medulla profile (II)", "description": "Gene expression profiles of kidney inner medulla from aquaporin-1 (AQP1) null and wild type mice compared against a AQP1 null common reference. AQP1 null mice manifest a severe defect in urinary concentrating ability.", "type": "Expression profiling by array", "pubmed_id": "15507545", "platform": "GPL1104", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15600", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "6", "value_type": "log ratio", "reference_series": "GSE1298", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS900", "description": "wild type", "sample_id": [ "GSM21298", "GSM21300", "GSM21301" ], "type": "genotype/variation", "id": "GDS900_1" }, { "dataset_id": "GDS900", "description": "AQP-/-", "sample_id": [ "GSM21299", "GSM22033", "GSM22034" ], "type": "genotype/variation", "id": "GDS900_2" } ], "taxid": "10090", "genes": 13165, "aggregation_function": "mean", "name": "GDS900", "version": 1.0, "instances": "6", "variables": 13167, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS900.tab", "compression": "gz" } ], [ [ "GDS901.tab" ], { "title": "Estrogen receptor alpha L540Q mutation effect on gene induction by estradiol: time course", "description": "Analysis of breast cancer cell line 231/ERalpha expressing L540Q mutant estrogen receptor after 1 or 2 hour estradiol treatment. Mutant receptor is defective in binding steroid receptor coactivator (SRC) proteins. Results identify estrogen-regulated genes that require SRCs for expression.", "type": "Expression profiling by array", "pubmed_id": "15023342", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1045", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS901", "description": "ERalpha transfected", "sample_id": [ "GSM16943", "GSM18491", "GSM18492", "GSM18493", "GSM18494", "GSM18495" ], "type": "protocol", "id": "GDS901_1" }, { "dataset_id": "GDS901", "description": "ERalpha L540Q transfected", "sample_id": [ "GSM18496", "GSM18497", "GSM18498", "GSM18499", "GSM18500", "GSM18501" ], "type": "protocol", "id": "GDS901_2" }, { "dataset_id": "GDS901", "description": "untreated", "sample_id": [ "GSM16943", "GSM18491", "GSM18496", "GSM18497" ], "type": "agent", "id": "GDS901_3" }, { "dataset_id": "GDS901", "description": "estradiol", "sample_id": [ "GSM18492", "GSM18493", "GSM18494", "GSM18495", "GSM18498", "GSM18499", "GSM18500", "GSM18501" ], "type": "agent", "id": "GDS901_4" }, { "dataset_id": "GDS901", "description": "0 h", "sample_id": [ "GSM16943", "GSM18491", "GSM18496", "GSM18497" ], "type": "time", "id": "GDS901_5" }, { "dataset_id": "GDS901", "description": "1 h", "sample_id": [ "GSM18492", "GSM18493", "GSM18498", "GSM18499" ], "type": "time", "id": "GDS901_6" }, { "dataset_id": "GDS901", "description": "2 h", "sample_id": [ "GSM18494", "GSM18495", "GSM18500", "GSM18501" ], "type": "time", "id": "GDS901_7" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS901", "version": 1.0, "instances": "12", "variables": 14067, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS901.tab", "compression": "gz" } ], [ [ "GDS902.tab" ], { "title": "Pyridine activator of myocyte hypertrophy effect on ventricular myocytes", "description": "Analysis of ventricular myocytes cultured 48 hours in 1 uM of pyridine activator of myocyte hypertrophy (PAMH) or 20 uM phenylephrine (PE). PAMH activates a modulator of calcineurin, and is as effective as phenylephrine in promoting hypertrophy. PAMH and PE treated cells exhibit similar expression.", "type": "Expression profiling by array", "pubmed_id": "16950785", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE925", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS902", "description": "untreated", "sample_id": [ "GSM13869" ], "type": "agent", "id": "GDS902_1" }, { "dataset_id": "GDS902", "description": "phenylephrine", "sample_id": [ "GSM13870" ], "type": "agent", "id": "GDS902_2" }, { "dataset_id": "GDS902", "description": "PAMH", "sample_id": [ "GSM13871" ], "type": "agent", "id": "GDS902_3" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS902", "version": 1.0, "instances": "3", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS902.tab", "compression": "gz" } ], [ [ "GDS905.tab" ], { "title": "Pancreatic beta cell lines overexpressing wild type MODY genes or mutant HNF1b alleles", "description": "Analysis of gene expression in pancreatic beta cell line INS-1 overexpressing the transcription factors HNF1b, HNF4a2, HNF6, or mutant forms of HNF1b, which were introduced by FRT/FLP recombination. Dysfunction of these transcription factors cause maturity onset diabetes of the young (MODY).", "type": "Expression profiling by array", "pubmed_id": "15520459", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE6428", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS905", "description": "wild type", "sample_id": [ "GSM27063", "GSM27147", "GSM27148", "GSM27149", "GSM27150", "GSM27151", "GSM27152", "GSM27153", "GSM27156", "GSM27157", "GSM27159", "GSM27160", "GSM27203", "GSM27204", "GSM27205", "GSM27206", "GSM27207" ], "type": "genotype/variation", "id": "GDS905_1" }, { "dataset_id": "GDS905", "description": "P328L329del", "sample_id": [ "GSM27161", "GSM27163", "GSM27165", "GSM27167" ], "type": "genotype/variation", "id": "GDS905_2" }, { "dataset_id": "GDS905", "description": "A263insGG", "sample_id": [ "GSM27169", "GSM27170", "GSM27171", "GSM27172" ], "type": "genotype/variation", "id": "GDS905_3" }, { "dataset_id": "GDS905", "description": "uninduced", "sample_id": [ "GSM27063", "GSM27148", "GSM27150", "GSM27152", "GSM27156", "GSM27159", "GSM27161", "GSM27165", "GSM27169", "GSM27171", "GSM27203", "GSM27204", "GSM27205", "GSM27206", "GSM27207" ], "type": "protocol", "id": "GDS905_4" }, { "dataset_id": "GDS905", "description": "induced", "sample_id": [ "GSM27147", "GSM27149", "GSM27151", "GSM27153", "GSM27157", "GSM27160", "GSM27163", "GSM27167", "GSM27170", "GSM27172" ], "type": "protocol", "id": "GDS905_5" }, { "dataset_id": "GDS905", "description": "parental", "sample_id": [ "GSM27203" ], "type": "cell line", "id": "GDS905_6" }, { "dataset_id": "GDS905", "description": "derivative", "sample_id": [ "GSM27204", "GSM27205", "GSM27206", "GSM27207" ], "type": "cell line", "id": "GDS905_7" }, { "dataset_id": "GDS905", "description": "HNF4a transfected", "sample_id": [ "GSM27150", "GSM27151", "GSM27152", "GSM27153" ], "type": "cell line", "id": "GDS905_8" }, { "dataset_id": "GDS905", "description": "HNF6 transfected", "sample_id": [ "GSM27156", "GSM27157", "GSM27159", "GSM27160" ], "type": "cell line", "id": "GDS905_9" }, { "dataset_id": "GDS905", "description": "HNF1b transfected", "sample_id": [ "GSM27063", "GSM27147", "GSM27148", "GSM27149", "GSM27161", "GSM27163", "GSM27165", "GSM27167", "GSM27169", "GSM27170", "GSM27171", "GSM27172" ], "type": "cell line", "id": "GDS905_10" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS905", "version": 1.0, "instances": "25", "variables": 13379, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS905.tab", "compression": "gz" } ], [ [ "GDS906.tab" ], { "title": "Bladder smooth muscle cell response to mechanical stretch", "description": "Expression profiling of cultured bladder smooth muscle cells subjected to repetitive mechanical stimulation for 4 hours. Chronic overdistension results in bladder wall thickening, associated with loss of muscle contractility. Results identify genes whose expression is altered by mechanical stimuli.", "type": "Expression profiling by array", "pubmed_id": "15467014", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1595", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS906", "description": "control", "sample_id": [ "GSM27367", "GSM27368", "GSM27369", "GSM27370" ], "type": "protocol", "id": "GDS906_1" }, { "dataset_id": "GDS906", "description": "stretch", "sample_id": [ "GSM27371", "GSM27372", "GSM27373", "GSM27374" ], "type": "protocol", "id": "GDS906_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS906", "version": 1.0, "instances": "8", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS906.tab", "compression": "gz" } ], [ [ "GDS907.tab" ], { "title": "Macrophage inflammatory protein-1alpha disruption effect on olfactory epithelium", "description": "Expression profiling of the olfactory epithelium (OE) from macrophage inflammatory protein-1alpha disrupted (Mip-1alpha-/-) 6 week old C57BL/6 males. Effect of injecting wild type Mip-1alpha into the OE of Mip-1alpha-/- males examined. Results provide insight into OE remodeling.", "type": "Expression profiling by array", "pubmed_id": "15467013", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1680", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS907", "description": "wild type", "sample_id": [ "GSM28861", "GSM28872", "GSM28885", "GSM28886" ], "type": "genotype/variation", "id": "GDS907_1" }, { "dataset_id": "GDS907", "description": "Mip-1alpha mutant", "sample_id": [ "GSM28883", "GSM28884", "GSM28889", "GSM28898" ], "type": "genotype/variation", "id": "GDS907_2" }, { "dataset_id": "GDS907", "description": "carrier injected", "sample_id": [ "GSM28861", "GSM28872", "GSM28883", "GSM28884" ], "type": "protocol", "id": "GDS907_3" }, { "dataset_id": "GDS907", "description": "Mip-1 alpha injected", "sample_id": [ "GSM28885", "GSM28886", "GSM28889", "GSM28898" ], "type": "protocol", "id": "GDS907_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS907", "version": 1.0, "instances": "8", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS907.tab", "compression": "gz" } ], [ [ "GDS908.tab" ], { "title": "Xylose metabolism", "description": "Strain YSX3 engineered for D-xylose utilization and respiration-deficient mutant FPL-YSX3P were grown under full aeration or oxygen limitation, with glucose or xylose as a carbon source.", "type": "Expression profiling by array", "pubmed_id": "15528549", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE835", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS908", "description": "glucose", "sample_id": [ "GSM12927", "GSM12929", "GSM12931" ], "type": "growth protocol", "id": "GDS908_1" }, { "dataset_id": "GDS908", "description": "xylose", "sample_id": [ "GSM12928", "GSM12930", "GSM12932" ], "type": "growth protocol", "id": "GDS908_2" }, { "dataset_id": "GDS908", "description": "aerobic", "sample_id": [ "GSM12927", "GSM12928", "GSM12929", "GSM12932" ], "type": "protocol", "id": "GDS908_3" }, { "dataset_id": "GDS908", "description": "oxygen-limited", "sample_id": [ "GSM12930", "GSM12931" ], "type": "protocol", "id": "GDS908_4" }, { "dataset_id": "GDS908", "description": "YSX3", "sample_id": [ "GSM12927", "GSM12928", "GSM12930", "GSM12931" ], "type": "strain", "id": "GDS908_5" }, { "dataset_id": "GDS908", "description": "mutant", "sample_id": [ "GSM12929", "GSM12932" ], "type": "strain", "id": "GDS908_6" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS908", "version": 1.0, "instances": "6", "variables": 7864, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS908.tab", "compression": "gz" } ], [ [ "GDS909.tab" ], { "title": "Alternative splicing in five tissues", "description": "Detection of tissue-specific regulation of alternative splicing for 316 genes in five normal tissues (brain, muscle, liver, bone marrow, testes) using array containing oligonucleotides spanning individual exons and splice junctions.", "type": "Expression profiling by array", "pubmed_id": "15598820", "platform": "GPL1704", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6541", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "10", "value_type": "log ratio", "reference_series": "GSE1989", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS909", "description": "testes", "sample_id": [ "GSM35263", "GSM35642" ], "type": "tissue", "id": "GDS909_1" }, { "dataset_id": "GDS909", "description": "brain", "sample_id": [ "GSM35714", "GSM35716" ], "type": "tissue", "id": "GDS909_2" }, { "dataset_id": "GDS909", "description": "liver", "sample_id": [ "GSM35717", "GSM35718" ], "type": "tissue", "id": "GDS909_3" }, { "dataset_id": "GDS909", "description": "muscle", "sample_id": [ "GSM35722", "GSM35724" ], "type": "tissue", "id": "GDS909_4" }, { "dataset_id": "GDS909", "description": "bone marrow", "sample_id": [ "GSM35731", "GSM35733" ], "type": "tissue", "id": "GDS909_5" } ], "taxid": "9606", "genes": 392, "aggregation_function": "mean", "name": "GDS909", "version": 1.0, "instances": "10", "variables": 394, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS909.tab", "compression": "gz" } ], [ [ "GDS91.tab" ], { "title": "Transcriptional regulation (I)", "description": "Genetic linkage analysis of global expression levels in a cross between two budding yeast strains. Identification of cis-acting and trans-acting loci that modulate a total of 570 genes.", "type": "Expression profiling by array", "pubmed_id": "11923494", "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "40", "value_type": "log ratio", "reference_series": "GSE37", "order": "none", "update_date": "Apr 08 2003", "subsets": [ { "dataset_id": "GDS91", "description": "group 1", "sample_id": [ "GSM1555", "GSM1556", "GSM1557", "GSM1558", "GSM1564" ], "type": "other", "id": "GDS91_1" }, { "dataset_id": "GDS91", "description": "group 2", "sample_id": [ "GSM1550", "GSM1565", "GSM1566", "GSM1567", "GSM1568", "GSM1574", "GSM1575" ], "type": "other", "id": "GDS91_2" }, { "dataset_id": "GDS91", "description": "group 3", "sample_id": [ "GSM1576", "GSM1577", "GSM1578", "GSM1584", "GSM1585" ], "type": "other", "id": "GDS91_3" }, { "dataset_id": "GDS91", "description": "group 4", "sample_id": [ "GSM1586", "GSM1587", "GSM1588", "GSM1594" ], "type": "other", "id": "GDS91_4" }, { "dataset_id": "GDS91", "description": "group 5", "sample_id": [ "GSM1595", "GSM1596", "GSM1597", "GSM1598", "GSM1604" ], "type": "other", "id": "GDS91_5" }, { "dataset_id": "GDS91", "description": "group 6", "sample_id": [ "GSM1605", "GSM1606", "GSM1607", "GSM1608", "GSM1614", "GSM1615", "GSM1616" ], "type": "other", "id": "GDS91_6" }, { "dataset_id": "GDS91", "description": "group 7", "sample_id": [ "GSM1617", "GSM1618", "GSM1624", "GSM1625", "GSM1626", "GSM1627", "GSM1628" ], "type": "other", "id": "GDS91_7" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS91", "version": 1.0, "instances": "40", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS91.tab", "compression": "gz" } ], [ [ "GDS910.tab" ], { "title": "Alternative splicing in five tissues (dye-swap)", "description": "Detection of tissue-specific regulation of alternative splicing for 316 genes in five normal tissues (brain, muscle, liver, bone marrow, testes) using array containing oligonucleotides spanning individual exons and splice junctions.", "type": "Expression profiling by array", "pubmed_id": "15598820", "platform": "GPL1704", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "6541", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE1989", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS910", "description": "testes", "sample_id": [ "GSM35643", "GSM35644" ], "type": "tissue", "id": "GDS910_1" }, { "dataset_id": "GDS910", "description": "brain", "sample_id": [ "GSM35713", "GSM35715" ], "type": "tissue", "id": "GDS910_2" }, { "dataset_id": "GDS910", "description": "liver", "sample_id": [ "GSM35719" ], "type": "tissue", "id": "GDS910_3" }, { "dataset_id": "GDS910", "description": "muscle", "sample_id": [ "GSM35720", "GSM35723" ], "type": "tissue", "id": "GDS910_4" }, { "dataset_id": "GDS910", "description": "bone marrow", "sample_id": [ "GSM35730", "GSM35732" ], "type": "tissue", "id": "GDS910_5" } ], "taxid": "9606", "genes": 392, "aggregation_function": "mean", "name": "GDS910", "version": 1.0, "instances": "9", "variables": 394, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS910.tab", "compression": "gz" } ], [ [ "GDS911.tab" ], { "title": "Growth-arrested cell: serum deprivation and contact inhibition growth-arrest comparison", "description": "Expression profiling of T98G cancer cells in growth-arrest induced by 3 days of either serum deprivation or contact inhibition. Results show that targets of the p130- E2F4 repressor complex are downregulated under the two growth-arrest conditions.", "type": "Expression profiling by array", "pubmed_id": "15525513", "platform": "GPL571", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22277", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1692", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS911", "description": "asynchronous", "sample_id": [ "GSM29233", "GSM29234", "GSM29235" ], "type": "growth protocol", "id": "GDS911_1" }, { "dataset_id": "GDS911", "description": "serum deprivation", "sample_id": [ "GSM29227", "GSM29231", "GSM29232" ], "type": "growth protocol", "id": "GDS911_2" }, { "dataset_id": "GDS911", "description": "contact inhibition", "sample_id": [ "GSM29228", "GSM29229", "GSM29230" ], "type": "growth protocol", "id": "GDS911_3" } ], "taxid": "9606", "genes": 14054, "aggregation_function": "mean", "name": "GDS911", "version": 1.0, "instances": "9", "variables": 14056, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS911.tab", "compression": "gz" } ], [ [ "GDS912.tab" ], { "title": "Hair follicle development: time course", "description": "Expression profiling of back skin excised from CB6F1 animals at various ages up to 1 year. Difference between synchronously and asynchronously growing hair used to identify hair cycle genes. Results provide insight into the mechanisms regulating hair follicle morphogenesis.", "type": "Expression profiling by array", "pubmed_id": "15520371", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "25", "value_type": "count", "reference_series": "GSE1912", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS912", "description": "1 d", "sample_id": [ "GSM34307", "GSM34308", "GSM34310" ], "type": "age", "id": "GDS912_1" }, { "dataset_id": "GDS912", "description": "6 d", "sample_id": [ "GSM34311", "GSM34313", "GSM34314" ], "type": "age", "id": "GDS912_2" }, { "dataset_id": "GDS912", "description": "14 d", "sample_id": [ "GSM34315", "GSM34316", "GSM34317" ], "type": "age", "id": "GDS912_3" }, { "dataset_id": "GDS912", "description": "17 d", "sample_id": [ "GSM34319", "GSM34320", "GSM34321" ], "type": "age", "id": "GDS912_4" }, { "dataset_id": "GDS912", "description": "23 d", "sample_id": [ "GSM34322", "GSM34323", "GSM34324" ], "type": "age", "id": "GDS912_5" }, { "dataset_id": "GDS912", "description": "9 wk", "sample_id": [ "GSM34325", "GSM34326", "GSM34327" ], "type": "age", "id": "GDS912_6" }, { "dataset_id": "GDS912", "description": "5 mo", "sample_id": [ "GSM34328", "GSM34329", "GSM34330" ], "type": "age", "id": "GDS912_7" }, { "dataset_id": "GDS912", "description": "1 y", "sample_id": [ "GSM34331", "GSM34332", "GSM34333", "GSM34334" ], "type": "age", "id": "GDS912_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS912", "version": 1.0, "instances": "25", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS912.tab", "compression": "gz" } ], [ [ "GDS913.tab" ], { "title": "DNA damage from ultraviolet and ionizing radiation effect on peripheral blood lymphocytes", "description": "Analysis of peripheral blood lymphocytes exposed to ultraviolet (10 J/m^2) or ionizing radiation (5 Gy). Lymphocytes obtained from 15 healthy individuals from ages 21 to 36 years and immortalized with Epstein-Barr virus. Results provide insight into transcriptional response to DNA damage.", "type": "Expression profiling by array", "pubmed_id": "15356296", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "45", "value_type": "count", "reference_series": "GSE1977", "order": "none", "update_date": "Dec 29 2004", "subsets": [ { "dataset_id": "GDS913", "description": "control", "sample_id": [ "GSM29784", "GSM29787", "GSM29790", "GSM29793", "GSM29796", "GSM29799", "GSM29802", "GSM29805", "GSM29814", "GSM29817", "GSM29822", "GSM29825", "GSM29828", "GSM29831", "GSM29834" ], "type": "agent", "id": "GDS913_1" }, { "dataset_id": "GDS913", "description": "ionizing radiation", "sample_id": [ "GSM29783", "GSM29786", "GSM29789", "GSM29792", "GSM29795", "GSM29798", "GSM29801", "GSM29804", "GSM29807", "GSM29816", "GSM29821", "GSM29824", "GSM29827", "GSM29830", "GSM29833" ], "type": "agent", "id": "GDS913_2" }, { "dataset_id": "GDS913", "description": "ultraviolet radiation", "sample_id": [ "GSM29785", "GSM29788", "GSM29791", "GSM29794", "GSM29797", "GSM29800", "GSM29803", "GSM29806", "GSM29815", "GSM29819", "GSM29823", "GSM29826", "GSM29829", "GSM29832", "GSM29835" ], "type": "agent", "id": "GDS913_3" }, { "dataset_id": "GDS913", "description": "NoCa1", "sample_id": [ "GSM29784", "GSM29783", "GSM29785" ], "type": "individual", "id": "GDS913_4" }, { "dataset_id": "GDS913", "description": "NoCa2", "sample_id": [ "GSM29786", "GSM29787", "GSM29788" ], "type": "individual", "id": "GDS913_5" }, { "dataset_id": "GDS913", "description": "NoCa3", "sample_id": [ "GSM29789", "GSM29790", "GSM29791" ], "type": "individual", "id": "GDS913_6" }, { "dataset_id": "GDS913", "description": "NoCa4", "sample_id": [ "GSM29792", "GSM29793", "GSM29794" ], "type": "individual", "id": "GDS913_7" }, { "dataset_id": "GDS913", "description": "NoCa5", "sample_id": [ "GSM29795", "GSM29796", "GSM29797" ], "type": "individual", "id": "GDS913_8" }, { "dataset_id": "GDS913", "description": "NoCa6", "sample_id": [ "GSM29798", "GSM29799", "GSM29800" ], "type": "individual", "id": "GDS913_9" }, { "dataset_id": "GDS913", "description": "NoCa7", "sample_id": [ "GSM29801", "GSM29802", "GSM29803" ], "type": "individual", "id": "GDS913_10" }, { "dataset_id": "GDS913", "description": "NoCa8", "sample_id": [ "GSM29804", "GSM29805", "GSM29806" ], "type": "individual", "id": "GDS913_11" }, { "dataset_id": "GDS913", "description": "NoCa9", "sample_id": [ "GSM29807", "GSM29814", "GSM29815" ], "type": "individual", "id": "GDS913_12" }, { "dataset_id": "GDS913", "description": "NoCa10", "sample_id": [ "GSM29816", "GSM29817", "GSM29819" ], "type": "individual", "id": "GDS913_13" }, { "dataset_id": "GDS913", "description": "NoCa11", "sample_id": [ "GSM29821", "GSM29822", "GSM29823" ], "type": "individual", "id": "GDS913_14" }, { "dataset_id": "GDS913", "description": "NoCa12", "sample_id": [ "GSM29824", "GSM29825", "GSM29826" ], "type": "individual", "id": "GDS913_15" }, { "dataset_id": "GDS913", "description": "NoCa13", "sample_id": [ "GSM29827", "GSM29828", "GSM29829" ], "type": "individual", "id": "GDS913_16" }, { "dataset_id": "GDS913", "description": "NoCa14", "sample_id": [ "GSM29830", "GSM29831", "GSM29832" ], "type": "individual", "id": "GDS913_17" }, { "dataset_id": "GDS913", "description": "NoCa15", "sample_id": [ "GSM29833", "GSM29834", "GSM29835" ], "type": "individual", "id": "GDS913_18" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS913", "version": 1.0, "instances": "45", "variables": 9474, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS913.tab", "compression": "gz" } ], [ [ "GDS915.tab" ], { "title": "Metabolic syndrome response to exercise intervention (HG-95A)", "description": "Analysis of skeletal muscle from overweight males with metabolic syndrome. Individuals subjected to chronic exercise training. Muscles examined prior to training, and after 1 and 14 days of recovery following 9 months training. Provides insight into effects of exercise intervention.", "type": "Expression profiling by array", "pubmed_id": "15347626", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1295", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS915", "description": "0 h", "sample_id": [ "GSM19165", "GSM19168", "GSM19169" ], "type": "time", "id": "GDS915_1" }, { "dataset_id": "GDS915", "description": "1 d after exercise", "sample_id": [ "GSM20657", "GSM20658" ], "type": "time", "id": "GDS915_2" }, { "dataset_id": "GDS915", "description": "14 d after exercise", "sample_id": [ "GSM19150", "GSM20660", "GSM20662" ], "type": "time", "id": "GDS915_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS915", "version": 1.0, "instances": "8", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS915.tab", "compression": "gz" } ], [ [ "GDS916.tab" ], { "title": "Ewing family tumor histogenetic origin", "description": "Human embryonic kidney cells HEK293 transfected with the Ewing family tumor (EFT)-specific EWS-FLI1 fusion protein to investigate the histogenetic origin of EFTs. The observed EFT-specific gene expression profile supports the concept of a neural crest and endothelial origin of EFT stem cells.", "type": "Expression profiling by array", "pubmed_id": "15548687", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1822", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS916", "description": "wild type", "sample_id": [ "GSM31805", "GSM31806" ], "type": "cell line", "id": "GDS916_1" }, { "dataset_id": "GDS916", "description": "mock transfected", "sample_id": [ "GSM31811", "GSM31812", "GSM31813" ], "type": "cell line", "id": "GDS916_2" }, { "dataset_id": "GDS916", "description": "EWS-FL1 transfected", "sample_id": [ "GSM31807", "GSM31808", "GSM31809", "GSM31810" ], "type": "cell line", "id": "GDS916_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS916", "version": 1.0, "instances": "9", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS916.tab", "compression": "gz" } ], [ [ "GDS917.tab" ], { "title": "Whole blood RNA isolation and leukocyte RNA purification: comparison of methods", "description": "Comparison of RNA isolation from whole blood using the PAXgene system to that from leukocytes using the buffy coat procedure. Blood of healthy subjects and trauma patients examined. Results indicate that RNA isolated from whole blood produced more noise than that from leukocytes.", "type": "Expression profiling by array", "pubmed_id": "15548831", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1343", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS917", "description": "buffy coat", "sample_id": [ "GSM21827", "GSM21828", "GSM21829", "GSM21830", "GSM21831", "GSM21832", "GSM21833", "GSM21834" ], "type": "protocol", "id": "GDS917_1" }, { "dataset_id": "GDS917", "description": "PAXgene", "sample_id": [ "GSM21835", "GSM21836", "GSM21837", "GSM21838", "GSM21839", "GSM21840", "GSM21841", "GSM21847" ], "type": "protocol", "id": "GDS917_2" }, { "dataset_id": "GDS917", "description": "leukocyte", "sample_id": [ "GSM21827", "GSM21828", "GSM21829", "GSM21830", "GSM21831", "GSM21832", "GSM21833", "GSM21834" ], "type": "tissue", "id": "GDS917_3" }, { "dataset_id": "GDS917", "description": "whole blood", "sample_id": [ "GSM21835", "GSM21836", "GSM21837", "GSM21838", "GSM21839", "GSM21840", "GSM21841", "GSM21847" ], "type": "tissue", "id": "GDS917_4" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS917", "version": 1.0, "instances": "16", "variables": 14066, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS917.tab", "compression": "gz" } ], [ [ "GDS918.tab" ], { "title": "Ewing family tumor cells: effect of transfection", "description": "Analysis of Ewing family tumor (EFT) cell line A673 response to interleukin-2 (IL-2) transfection to assess possible undesirable effects (e.g. tumor stimulation) of in vitro manipulation. Results impact the potential use of IL-2 transfection as an in vivo immunotherapy for EFT patients.", "type": "Expression profiling by array", "pubmed_id": [ "15170886", "15548687" ], "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1823", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS918", "description": "wild type", "sample_id": [ "GSM31858", "GSM31859", "GSM31860" ], "type": "cell line", "id": "GDS918_1" }, { "dataset_id": "GDS918", "description": "mock transfected", "sample_id": [ "GSM31864", "GSM31865", "GSM31866" ], "type": "cell line", "id": "GDS918_2" }, { "dataset_id": "GDS918", "description": "IL-2 transfected", "sample_id": [ "GSM31861", "GSM31862", "GSM31863" ], "type": "cell line", "id": "GDS918_3" }, { "dataset_id": "GDS918", "description": "1", "sample_id": [ "GSM31858", "GSM31861", "GSM31864" ], "type": "isolate", "id": "GDS918_4" }, { "dataset_id": "GDS918", "description": "2", "sample_id": [ "GSM31859", "GSM31862", "GSM31865" ], "type": "isolate", "id": "GDS918_5" }, { "dataset_id": "GDS918", "description": "3", "sample_id": [ "GSM31860", "GSM31863", "GSM31866" ], "type": "isolate", "id": "GDS918_6" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS918", "version": 1.0, "instances": "9", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS918.tab", "compression": "gz" } ], [ [ "GDS919.tab" ], { "title": "Cytosine methylase inactivation and histone deacetylase inhibition effect on expression", "description": "Analysis of 16 day old Columbia plantlets grown in media with 7 ug/ml 5-aza-2'deoxycytosine (aza-dC) to block cytosine methylation (Cm) or 0.5 uM trichostatin A (TSA) to block histone deacetylation (HD) or both. Results provide insight into the interaction between Cm and HD in gene regulation.", "type": "Expression profiling by array", "pubmed_id": "15516340", "platform": "GPL1382", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15360", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE1612", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS919", "description": "aza-dC", "sample_id": [ "GSM27521", "GSM27527" ], "type": "agent", "id": "GDS919_1" }, { "dataset_id": "GDS919", "description": "TSA", "sample_id": [ "GSM27522", "GSM27530" ], "type": "agent", "id": "GDS919_2" }, { "dataset_id": "GDS919", "description": "aza-dC, TSA", "sample_id": [ "GSM27523" ], "type": "agent", "id": "GDS919_3" } ], "taxid": "3702", "genes": 11336, "aggregation_function": "mean", "name": "GDS919", "version": 1.0, "instances": "5", "variables": 11338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS919.tab", "compression": "gz" } ], [ [ "GDS92.tab" ], { "title": "Transcriptional regulation (I)(dye-swap)", "description": "Genetic linkage analysis of global expression levels in a cross between two budding yeast strains. Identification of cis-acting and trans-acting loci that modulate a total of 570 genes.", "type": "Expression profiling by array", "pubmed_id": "11923494", "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "40", "value_type": "log ratio", "reference_series": "GSE37", "order": "none", "update_date": "Apr 01 2003", "subsets": [ { "dataset_id": "GDS92", "description": "group 1", "sample_id": [ "GSM1551", "GSM1552", "GSM1553", "GSM1554", "GSM1559" ], "type": "other", "id": "GDS92_1" }, { "dataset_id": "GDS92", "description": "group 2", "sample_id": [ "GSM1549", "GSM1560", "GSM1561", "GSM1562", "GSM1563", "GSM1569", "GSM1570" ], "type": "other", "id": "GDS92_2" }, { "dataset_id": "GDS92", "description": "group 3", "sample_id": [ "GSM1571", "GSM1572", "GSM1573", "GSM1579", "GSM1580" ], "type": "other", "id": "GDS92_3" }, { "dataset_id": "GDS92", "description": "group 4", "sample_id": [ "GSM1581", "GSM1582", "GSM1583", "GSM1589" ], "type": "other", "id": "GDS92_4" }, { "dataset_id": "GDS92", "description": "group 5", "sample_id": [ "GSM1590", "GSM1591", "GSM1592", "GSM1593", "GSM1599" ], "type": "other", "id": "GDS92_5" }, { "dataset_id": "GDS92", "description": "group 6", "sample_id": [ "GSM1600", "GSM1601", "GSM1602", "GSM1603", "GSM1609", "GSM1610", "GSM1611" ], "type": "other", "id": "GDS92_6" }, { "dataset_id": "GDS92", "description": "group 7", "sample_id": [ "GSM1612", "GSM1613", "GSM1619", "GSM1620", "GSM1621", "GSM1622", "GSM1623" ], "type": "other", "id": "GDS92_7" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS92", "version": 1.0, "instances": "40", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS92.tab", "compression": "gz" } ], [ [ "GDS920.tab" ], { "title": "Cytosine methylase inactivation and histone deacetylase inhibition effect on expression (dye-swap)", "description": "Analysis of 16 day old Columbia plantlets grown in media with 7 ug/ml 5-aza-2'deoxycytosine (aza-dC) to block cytosine methylation (Cm) or 0.5 uM trichostatin A (TSA) to block histone deacetylation (HD) or both. Results provide insight into the interaction between Cm and HD in gene regulation.", "type": "Expression profiling by array", "pubmed_id": "15516340", "platform": "GPL1382", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "15360", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE1612", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS920", "description": "aza-dC", "sample_id": [ "GSM27524", "GSM27528" ], "type": "agent", "id": "GDS920_1" }, { "dataset_id": "GDS920", "description": "TSA", "sample_id": [ "GSM27525", "GSM27529" ], "type": "agent", "id": "GDS920_2" }, { "dataset_id": "GDS920", "description": "aza-dC, TSA", "sample_id": [ "GSM27526" ], "type": "agent", "id": "GDS920_3" } ], "taxid": "3702", "genes": 11336, "aggregation_function": "mean", "name": "GDS920", "version": 1.0, "instances": "5", "variables": 11338, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS920.tab", "compression": "gz" } ], [ [ "GDS922.tab" ], { "title": "TOR2-controlled transcription", "description": "Comparison of total transcription profiles for temperature-sensitive TOR2 mutant strain SH121 to its isogenic wild type counterpart SH100. Results indicate that TOR2 inactivation leads to enhanced transcription of Gcn4-controlled target genes.", "type": "Expression profiling by array", "pubmed_id": [ "15476558", "16959779" ], "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1814", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS922", "description": "0 h", "sample_id": [ "GSM31653", "GSM31654", "GSM31659", "GSM31660" ], "type": "time", "id": "GDS922_1" }, { "dataset_id": "GDS922", "description": "2 h", "sample_id": [ "GSM31655", "GSM31656", "GSM31661", "GSM31662" ], "type": "time", "id": "GDS922_2" }, { "dataset_id": "GDS922", "description": "6 h", "sample_id": [ "GSM31657", "GSM31658", "GSM31663", "GSM31664" ], "type": "time", "id": "GDS922_3" }, { "dataset_id": "GDS922", "description": "wild type", "sample_id": [ "GSM31653", "GSM31654", "GSM31655", "GSM31656", "GSM31657", "GSM31658" ], "type": "genotype/variation", "id": "GDS922_4" }, { "dataset_id": "GDS922", "description": "TOR2 mutant", "sample_id": [ "GSM31659", "GSM31660", "GSM31661", "GSM31662", "GSM31663", "GSM31664" ], "type": "genotype/variation", "id": "GDS922_5" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS922", "version": 1.0, "instances": "12", "variables": 7863, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS922.tab", "compression": "gz" } ], [ [ "GDS925.tab" ], { "title": "Myotube starvation model of atrophy", "description": "Expression profiling of starved skeletal muscle C2C12 myotubes. Starvation induced by witholding differentiation medium containing 2% horse serum for 4 days. Results show that the expression profile of starved myotubes differs to that of whole muscle atrophy.", "type": "Expression profiling by array", "pubmed_id": "15608089", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "8", "value_type": "count", "reference_series": "GSE1776", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS925", "description": "control", "sample_id": [ "GSM30759", "GSM30771", "GSM30772", "GSM30773" ], "type": "growth protocol", "id": "GDS925_1" }, { "dataset_id": "GDS925", "description": "starved", "sample_id": [ "GSM30774", "GSM30775", "GSM30776", "GSM30777" ], "type": "growth protocol", "id": "GDS925_2" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS925", "version": 1.0, "instances": "8", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS925.tab", "compression": "gz" } ], [ [ "GDS926.tab" ], { "title": "Photosynthesis and photosystem I mutant", "description": "Comparison of expression profiles of psad1 mutant lacking D subunit of photosystem I (PSI-D) and wild type. Photosynthetic electron flow and growth are affected in psad1 mutant.", "type": "Expression profiling by array", "pubmed_id": [ "14996217", "15656970" ], "platform": "GPL513", "platform_organism": "Arabidopsis thaliana", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "3439", "sample_organism": "Arabidopsis thaliana", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1234", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS926", "description": "wild type", "sample_id": [ "GSM20329", "GSM20331", "GSM20333", "GSM20335", "GSM20337", "GSM20339" ], "type": "genotype/variation", "id": "GDS926_1" }, { "dataset_id": "GDS926", "description": "psad1 mutant", "sample_id": [ "GSM20330", "GSM20332", "GSM20334", "GSM20336", "GSM20338", "GSM20340" ], "type": "genotype/variation", "id": "GDS926_2" } ], "taxid": "3702", "genes": 2993, "aggregation_function": "mean", "name": "GDS926", "version": 1.0, "instances": "12", "variables": 2995, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS926.tab", "compression": "gz" } ], [ [ "GDS927.tab" ], { "title": "Erythroid progenitor erythropoiesis", "description": "Analysis of three distinct stages of late erythroid progenitor cell development. Developmentally synchronized erythroid progenitor cells (EPCs) were prepared from splenocytes at 80, 100 and 120 hours after thiamphenical withdrawal.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE135", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS927", "description": "80 h", "sample_id": [ "GSM3371", "GSM3372" ], "type": "time", "id": "GDS927_1" }, { "dataset_id": "GDS927", "description": "100 h", "sample_id": [ "GSM3373", "GSM3374" ], "type": "time", "id": "GDS927_2" }, { "dataset_id": "GDS927", "description": "120 h", "sample_id": [ "GSM3375", "GSM3376" ], "type": "time", "id": "GDS927_3" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS927", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS927.tab", "compression": "gz" } ], [ [ "GDS928.tab" ], { "title": "Osteoblasts and microgravity-induced bone loss", "description": "Identification of gravisensitive gene expression in 2T3 pre-osteoblast cells exposed to 3 days of simulated microgravity. Microgravity causes bone loss possibly due to decreased bone formation by osteoblasts. Results provide insight into similar pathologic conditions such as osteoporosis.", "type": "Expression profiling by array", "pubmed_id": [ "15689415", "17243119" ], "platform": "GPL1219", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10500", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1367", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS928", "description": "control", "sample_id": [ "GSM22097", "GSM22098", "GSM22099" ], "type": "protocol", "id": "GDS928_1" }, { "dataset_id": "GDS928", "description": "microgravity", "sample_id": [ "GSM22100", "GSM22101", "GSM22102" ], "type": "protocol", "id": "GDS928_2" } ], "taxid": "10090", "genes": 9940, "aggregation_function": "mean", "name": "GDS928", "version": 1.0, "instances": "6", "variables": 9942, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS928.tab", "compression": "gz" } ], [ [ "GDS93.tab" ], { "title": "Transcriptional regulation (II)", "description": "Genetic linkage analysis of global expression levels in a cross between two budding yeast strains. Identification of cis-acting and trans-acting loci that modulate a total of 570 genes.", "type": "Expression profiling by array", "pubmed_id": "11923494", "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "12", "value_type": "log ratio", "reference_series": "GSE38", "order": "none", "update_date": "Apr 01 2003", "subsets": [ { "dataset_id": "GDS93", "description": "BY4716", "sample_id": [ "GSM1629", "GSM1630", "GSM1631", "GSM1632", "GSM1633", "GSM1639" ], "type": "strain", "id": "GDS93_1" }, { "dataset_id": "GDS93", "description": "wild type", "sample_id": [ "GSM1640", "GSM1641", "GSM1642", "GSM1643", "GSM1648", "GSM1649" ], "type": "strain", "id": "GDS93_2" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS93", "version": 1.0, "instances": "12", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS93.tab", "compression": "gz" } ], [ [ "GDS94.tab" ], { "title": "Transcriptional regulation (II)(dye-swap)", "description": "Genetic linkage analysis of global expression levels in a cross between two budding yeast strains. Identification of cis-acting and trans-acting loci that modulate a total of 570 genes.", "type": "Expression profiling by array", "pubmed_id": "11923494", "platform": "GPL118", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "7085", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "2", "sample_count": "11", "value_type": "log ratio", "reference_series": "GSE38", "order": "none", "update_date": "Apr 01 2003", "subsets": [ { "dataset_id": "GDS94", "description": "BY4716", "sample_id": [ "GSM1634", "GSM1635", "GSM1636", "GSM1637", "GSM1638", "GSM1644" ], "type": "strain", "id": "GDS94_1" }, { "dataset_id": "GDS94", "description": "wild type", "sample_id": [ "GSM1645", "GSM1646", "GSM1647", "GSM1650", "GSM1651" ], "type": "strain", "id": "GDS94_2" } ], "taxid": "4932", "genes": 6200, "aggregation_function": "mean", "name": "GDS94", "version": 1.0, "instances": "11", "variables": 6202, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS94.tab", "compression": "gz" } ], [ [ "GDS940.tab" ], { "title": "Kaposi sarcoma-associated herpesvirus infection of primary human dermal endothelial cells", "description": "Primary human dermal endothelial cells (HDMEC) were infected with isolated Kaposi sarcoma-associated herpesvirus (KSHV) for 7 days. Infection of HDVECs with KSHV results in upregulation of lymphatic lineage-specific genes and downregulation of blood vascular genes.", "type": "Expression profiling by array", "pubmed_id": "15220917", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "4", "value_type": "count", "reference_series": "GSE1377", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS940", "description": "uninfected control", "sample_id": [ "GSM21935", "GSM21971" ], "type": "protocol", "id": "GDS940_1" }, { "dataset_id": "GDS940", "description": "KSHV-infected", "sample_id": [ "GSM21961", "GSM21972" ], "type": "protocol", "id": "GDS940_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS940", "version": 1.0, "instances": "4", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS940.tab", "compression": "gz" } ], [ [ "GDS942.tab" ], { "title": "Skeletal myoblast cell line KM109 differentiation: time course (I)", "description": "Expression profiling of primary myoblast cell line KM109 obtained from muscle biopsy of a healthy individual and induced to differentiate by serum deprivation. Cells examined at various time points up to 14 days following serum deprivation. Results provide insight into late myogenesis.", "type": "Expression profiling by array", "pubmed_id": "15336692", "platform": "GPL783", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10800", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE908", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS942", "description": "0 d", "sample_id": [ "GSM13754" ], "type": "time", "id": "GDS942_1" }, { "dataset_id": "GDS942", "description": "2 d", "sample_id": [ "GSM13756" ], "type": "time", "id": "GDS942_2" }, { "dataset_id": "GDS942", "description": "4 d", "sample_id": [ "GSM13758" ], "type": "time", "id": "GDS942_3" }, { "dataset_id": "GDS942", "description": "6 d", "sample_id": [ "GSM13760" ], "type": "time", "id": "GDS942_4" }, { "dataset_id": "GDS942", "description": "14 d", "sample_id": [ "GSM13762" ], "type": "time", "id": "GDS942_5" } ], "taxid": "9606", "genes": 9372, "aggregation_function": "mean", "name": "GDS942", "version": 1.0, "instances": "5", "variables": 9374, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS942.tab", "compression": "gz" } ], [ [ "GDS943.tab" ], { "title": "Skeletal myoblast cell line KM109 differentiation: time course (I, dye-swap)", "description": "Expression profiling of primary myoblast cell line KM109 obtained from muscle biopsy of a healthy individual and induced to differentiate by serum deprivation. Cells examined at various time points up to 14 days following serum deprivation. Results provide insight into late myogenesis.", "type": "Expression profiling by array", "pubmed_id": "15336692", "platform": "GPL783", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10800", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE908", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS943", "description": "0 d", "sample_id": [ "GSM13755" ], "type": "time", "id": "GDS943_1" }, { "dataset_id": "GDS943", "description": "1 d", "sample_id": [ "GSM13757" ], "type": "time", "id": "GDS943_2" }, { "dataset_id": "GDS943", "description": "4 d", "sample_id": [ "GSM13759" ], "type": "time", "id": "GDS943_3" }, { "dataset_id": "GDS943", "description": "6 d", "sample_id": [ "GSM13761" ], "type": "time", "id": "GDS943_4" }, { "dataset_id": "GDS943", "description": "14 d", "sample_id": [ "GSM13763" ], "type": "time", "id": "GDS943_5" } ], "taxid": "9606", "genes": 9372, "aggregation_function": "mean", "name": "GDS943", "version": 1.0, "instances": "5", "variables": 9374, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS943.tab", "compression": "gz" } ], [ [ "GDS944.tab" ], { "title": "Skeletal myoblast cell line KM109 differentiation: time course (II)", "description": "Expression profiling of primary myoblast cell line KM109 obtained from muscle biopsy of a healthy individual and induced to differentiate by serum deprivation. Cells examined at various time points up to 14 days following serum deprivation. Results provide insight into late myogenesis.", "type": "Expression profiling by array", "pubmed_id": "15336692", "platform": "GPL784", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10800", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE909", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS944", "description": "0 d", "sample_id": [ "GSM13764" ], "type": "time", "id": "GDS944_1" }, { "dataset_id": "GDS944", "description": "1 d", "sample_id": [ "GSM13766" ], "type": "time", "id": "GDS944_2" }, { "dataset_id": "GDS944", "description": "4 d", "sample_id": [ "GSM13768" ], "type": "time", "id": "GDS944_3" }, { "dataset_id": "GDS944", "description": "6 d", "sample_id": [ "GSM13770" ], "type": "time", "id": "GDS944_4" }, { "dataset_id": "GDS944", "description": "14 d", "sample_id": [ "GSM13772" ], "type": "time", "id": "GDS944_5" } ], "taxid": "9606", "genes": 8914, "aggregation_function": "mean", "name": "GDS944", "version": 1.0, "instances": "5", "variables": 8916, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS944.tab", "compression": "gz" } ], [ [ "GDS945.tab" ], { "title": "Skeletal myoblast cell line KM109 differentiation: time course (II, dye-swap)", "description": "Expression profiling of primary myoblast cell line KM109 obtained from muscle biopsy of a healthy individual and induced to differentiate by serum deprivation. Cells examined at various time points up to 14 days following serum deprivation. Results provide insight into late myogenesis.", "type": "Expression profiling by array", "pubmed_id": "15336692", "platform": "GPL784", "platform_organism": "Homo sapiens", "platform_technology_type": "spotted oligonucleotide", "feature_count": "10800", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "2", "sample_count": "5", "value_type": "log ratio", "reference_series": "GSE909", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS945", "description": "0 d", "sample_id": [ "GSM13765" ], "type": "time", "id": "GDS945_1" }, { "dataset_id": "GDS945", "description": "1 d", "sample_id": [ "GSM13767" ], "type": "time", "id": "GDS945_2" }, { "dataset_id": "GDS945", "description": "4 d", "sample_id": [ "GSM13769" ], "type": "time", "id": "GDS945_3" }, { "dataset_id": "GDS945", "description": "6 d", "sample_id": [ "GSM13771" ], "type": "time", "id": "GDS945_4" }, { "dataset_id": "GDS945", "description": "14 d", "sample_id": [ "GSM13773" ], "type": "time", "id": "GDS945_5" } ], "taxid": "9606", "genes": 8914, "aggregation_function": "mean", "name": "GDS945", "version": 1.0, "instances": "5", "variables": 8916, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS945.tab", "compression": "gz" } ], [ [ "GDS946.tab" ], { "title": "Familial combined hyperlipidemia", "description": "Expression profiling of lymphoblastic cell lines derived from the peripheral blood lymphocytes of patients with familial combined hyperlipidemia (FCHL), the most common form of genetically determined dyslipidemia. Results provide insight into the pathophysiology of FCHL.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE1010", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS946", "description": "normal", "sample_id": [ "GSM15814", "GSM15815", "GSM15816", "GSM15817", "GSM15820", "GSM15867", "GSM15868", "GSM15869", "GSM15871", "GSM15873", "GSM15874", "GSM15876" ], "type": "disease state", "id": "GDS946_1" }, { "dataset_id": "GDS946", "description": "familial combined hyperlipidemia", "sample_id": [ "GSM15808", "GSM15809", "GSM15810", "GSM15811", "GSM15812", "GSM15813", "GSM15818", "GSM15819", "GSM15866", "GSM15870", "GSM15872", "GSM15875" ], "type": "disease state", "id": "GDS946_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS946", "version": 1.0, "instances": "24", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS946.tab", "compression": "gz" } ], [ [ "GDS947.tab" ], { "title": "Lacrimal gland and cornea burn: time course (SMCmou8400A)", "description": "Examination of the effect of stimulation stress produced by chemical burn to the cornea in the lacrimal gland over a 0.5 to 360 hour time course in comparison with the non-stimulated controls.", "type": "Expression profiling by array", "pubmed_id": "15671270", "platform": "GPL1230", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "16928", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "46", "value_type": "log ratio", "reference_series": "GSE1393", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS947", "description": "0.5 h", "sample_id": [ "GSM22716", "GSM22717", "GSM22718", "GSM22719", "GSM22720", "GSM22721" ], "type": "time", "id": "GDS947_1" }, { "dataset_id": "GDS947", "description": "1 h", "sample_id": [ "GSM22722", "GSM22723", "GSM22724", "GSM22725", "GSM22726" ], "type": "time", "id": "GDS947_2" }, { "dataset_id": "GDS947", "description": "3 h", "sample_id": [ "GSM22727", "GSM22728", "GSM22729", "GSM22730", "GSM22731", "GSM22732" ], "type": "time", "id": "GDS947_3" }, { "dataset_id": "GDS947", "description": "8 h", "sample_id": [ "GSM22733", "GSM22734", "GSM22735", "GSM22736", "GSM22737", "GSM22738" ], "type": "time", "id": "GDS947_4" }, { "dataset_id": "GDS947", "description": "24 h", "sample_id": [ "GSM22739", "GSM22740", "GSM22741", "GSM22742", "GSM22743" ], "type": "time", "id": "GDS947_5" }, { "dataset_id": "GDS947", "description": "72 h", "sample_id": [ "GSM22744", "GSM22745", "GSM22746", "GSM22747", "GSM22748", "GSM22749" ], "type": "time", "id": "GDS947_6" }, { "dataset_id": "GDS947", "description": "120 h", "sample_id": [ "GSM22750", "GSM22751", "GSM22752", "GSM22753", "GSM22754", "GSM22755" ], "type": "time", "id": "GDS947_7" }, { "dataset_id": "GDS947", "description": "360 h", "sample_id": [ "GSM22756", "GSM22757", "GSM22758", "GSM22759", "GSM22760", "GSM22761" ], "type": "time", "id": "GDS947_8" } ], "taxid": "10090", "genes": 7536, "aggregation_function": "mean", "name": "GDS947", "version": 1.0, "instances": "46", "variables": 7538, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS947.tab", "compression": "gz" } ], [ [ "GDS948.tab" ], { "title": "Lacrimal gland and cornea burn: time course (SMCmou6600Av1)", "description": "Examination of the effect of stimulation stress produced by chemical burn to the cornea in the lacrimal gland over a 0.5 to 24 hour time course in comparison with the non-stimulated controls.", "type": "Expression profiling by array", "pubmed_id": "15671270", "platform": "GPL1231", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "14720", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "18", "value_type": "log ratio", "reference_series": "GSE1393", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS948", "description": "0.5 h", "sample_id": [ "GSM22763", "GSM22764", "GSM22765", "GSM22766", "GSM22767", "GSM22768" ], "type": "time", "id": "GDS948_1" }, { "dataset_id": "GDS948", "description": "1 h", "sample_id": [ "GSM22769", "GSM22770", "GSM22771", "GSM22772" ], "type": "time", "id": "GDS948_2" }, { "dataset_id": "GDS948", "description": "8 h", "sample_id": [ "GSM22773", "GSM22774", "GSM22775", "GSM22776" ], "type": "time", "id": "GDS948_3" }, { "dataset_id": "GDS948", "description": "24 h", "sample_id": [ "GSM22777", "GSM22778", "GSM22779", "GSM22780" ], "type": "time", "id": "GDS948_4" } ], "taxid": "10090", "genes": 6501, "aggregation_function": "mean", "name": "GDS948", "version": 1.0, "instances": "18", "variables": 6503, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS948.tab", "compression": "gz" } ], [ [ "GDS949.tab" ], { "title": "Lacrimal gland and cornea burn: time course (SMCmou6600Av2)", "description": "Examination of the effect of stimulation stress produced by chemical burn to the cornea in the lacrimal gland over a 1 to 360 hour time course in comparison with the non-stimulated controls.", "type": "Expression profiling by array", "pubmed_id": "15671270", "platform": "GPL1232", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "14720", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "29", "value_type": "log ratio", "reference_series": "GSE1393", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS949", "description": "1 h", "sample_id": [ "GSM22838", "GSM22839" ], "type": "time", "id": "GDS949_1" }, { "dataset_id": "GDS949", "description": "3 h", "sample_id": [ "GSM22840", "GSM22841", "GSM22842", "GSM22843", "GSM22844" ], "type": "time", "id": "GDS949_2" }, { "dataset_id": "GDS949", "description": "8 h", "sample_id": [ "GSM22845", "GSM22846" ], "type": "time", "id": "GDS949_3" }, { "dataset_id": "GDS949", "description": "24 h", "sample_id": [ "GSM22847", "GSM22848" ], "type": "time", "id": "GDS949_4" }, { "dataset_id": "GDS949", "description": "72 h", "sample_id": [ "GSM22849", "GSM22850", "GSM22851", "GSM22852", "GSM22853", "GSM22854" ], "type": "time", "id": "GDS949_5" }, { "dataset_id": "GDS949", "description": "120 h", "sample_id": [ "GSM22855", "GSM22856", "GSM22857", "GSM22858", "GSM22859", "GSM22860" ], "type": "time", "id": "GDS949_6" }, { "dataset_id": "GDS949", "description": "360 h", "sample_id": [ "GSM22861", "GSM22862", "GSM22863", "GSM22864", "GSM22865", "GSM22866" ], "type": "time", "id": "GDS949_7" } ], "taxid": "10090", "genes": 6501, "aggregation_function": "mean", "name": "GDS949", "version": 1.0, "instances": "29", "variables": 6503, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS949.tab", "compression": "gz" } ], [ [ "GDS95.tab" ], { "title": "Tryptophan metabolism (ecoli_3.0)", "description": "Analysis of changes in gene expression elicited by perturbations of tryptophan metabolism using strains with mutations that affect tryptophan metabolism.", "type": "Expression profiling by array", "pubmed_id": "11027315", "platform": "GPL16", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "5760", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE7", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS95", "description": "no indole", "sample_id": [ "GSM555" ], "type": "dose", "id": "GDS95_1" }, { "dataset_id": "GDS95", "description": "indole, 10 ug/ml", "sample_id": [ "GSM557", "GSM558", "GSM559", "GSM560" ], "type": "dose", "id": "GDS95_2" }, { "dataset_id": "GDS95", "description": "indole, 15 ug/ml", "sample_id": [ "GSM561", "GSM562", "GSM563", "GSM564" ], "type": "dose", "id": "GDS95_3" }, { "dataset_id": "GDS95", "description": "0 minute", "sample_id": [ "GSM555" ], "type": "time", "id": "GDS95_4" }, { "dataset_id": "GDS95", "description": "5 minute", "sample_id": [ "GSM557", "GSM561" ], "type": "time", "id": "GDS95_5" }, { "dataset_id": "GDS95", "description": "15 minute", "sample_id": [ "GSM558", "GSM562" ], "type": "time", "id": "GDS95_6" }, { "dataset_id": "GDS95", "description": "30 minute", "sample_id": [ "GSM559", "GSM563" ], "type": "time", "id": "GDS95_7" }, { "dataset_id": "GDS95", "description": "60 minute", "sample_id": [ "GSM560", "GSM564" ], "type": "time", "id": "GDS95_8" } ], "taxid": "562", "genes": 4292, "aggregation_function": "mean", "name": "GDS95", "version": 1.0, "instances": "9", "variables": 4295, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS95.tab", "compression": "gz" } ], [ [ "GDS951.tab" ], { "title": "Hormone-induced adipogenesis suppressed by 2,3,7,8-tetrachlorodibenzo-p-dioxin and EGF", "description": "Analysis of differentiated C3H10T1/2 fibroblasts treated with 10 nM 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) and/or 10 nM EGF. Prior to treatment, cells induced to differentiate into adipocytes with IDMB hormone. EGF increases effectiveness of TCDD in suppressing hormone-induced adipogenesis.", "type": "Expression profiling by array", "pubmed_id": [ "15667827", "16054899" ], "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "18", "value_type": "count", "reference_series": "GSE1123", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS951", "description": "untreated", "sample_id": [ "GSM18437", "GSM18438", "GSM18439" ], "type": "agent", "id": "GDS951_1" }, { "dataset_id": "GDS951", "description": "EGF", "sample_id": [ "GSM18418", "GSM18419" ], "type": "agent", "id": "GDS951_2" }, { "dataset_id": "GDS951", "description": "TCDD", "sample_id": [ "GSM18440", "GSM18441" ], "type": "agent", "id": "GDS951_3" }, { "dataset_id": "GDS951", "description": "EGF, TCDD", "sample_id": [ "GSM18420", "GSM18421" ], "type": "agent", "id": "GDS951_4" }, { "dataset_id": "GDS951", "description": "IDMB", "sample_id": [ "GSM18459", "GSM18460", "GSM18461" ], "type": "agent", "id": "GDS951_5" }, { "dataset_id": "GDS951", "description": "IDMB, EGF", "sample_id": [ "GSM18457", "GSM18458" ], "type": "agent", "id": "GDS951_6" }, { "dataset_id": "GDS951", "description": "IDMB, TCDD", "sample_id": [ "GSM18453", "GSM18454" ], "type": "agent", "id": "GDS951_7" }, { "dataset_id": "GDS951", "description": "IDMB, EGF, TCDD", "sample_id": [ "GSM18455", "GSM18456" ], "type": "agent", "id": "GDS951_8" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS951", "version": 1.0, "instances": "18", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS951.tab", "compression": "gz" } ], [ [ "GDS953.tab" ], { "title": "Embryonic lung: branching and non-branching regions", "description": "Transcriptional profiles of distal branching and proximal non-branching regions of lung at embryonic day E11.5. During development, the proximal and distal regions of respiratory tract undergo distinct processes that give rise to conducting airways and alveoli.", "type": "Expression profiling by array", "pubmed_id": "15328023", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1423", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS953", "description": "branching region", "sample_id": [ "GSM23483", "GSM23484", "GSM23485" ], "type": "tissue", "id": "GDS953_1" }, { "dataset_id": "GDS953", "description": "non-branching region", "sample_id": [ "GSM23486", "GSM23487", "GSM23488" ], "type": "tissue", "id": "GDS953_2" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS953", "version": 1.0, "instances": "6", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS953.tab", "compression": "gz" } ], [ [ "GDS954.tab" ], { "title": "Ketogenic diet effect on brain hippocampus", "description": "Expression profiling of brain hippocampi of animals fed the ketogenic diet (KD). KD is an anticonvulsant treatment used to manage medically intractable epilepsies. Results provide insight into the anticonvulsant action of KD.", "type": "Expression profiling by array", "pubmed_id": "16807920", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "11", "value_type": "count", "reference_series": "GSE1155", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS954", "description": "control diet", "sample_id": [ "GSM19300", "GSM19301", "GSM19302", "GSM19303", "GSM19304", "GSM19305" ], "type": "protocol", "id": "GDS954_1" }, { "dataset_id": "GDS954", "description": "ketogenic diet", "sample_id": [ "GSM19306", "GSM19307", "GSM19308", "GSM19309", "GSM19310" ], "type": "protocol", "id": "GDS954_2" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS954", "version": 1.0, "instances": "11", "variables": 13377, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS954.tab", "compression": "gz" } ], [ [ "GDS955.tab" ], { "title": "Early-life kainite-induced seizure effect on brain hippocampus: time course", "description": "Analysis of early-life kainite induced seizures by expression profiling of brain hippocampi from animals at postnatal day 15. Hippocampi examined at various time points up to 240 hours following kainite treatment. Results provide insight into molecular effects of early childhood convulsions.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "30", "value_type": "count", "reference_series": "GSE1156", "order": "ordered", "update_date": "Dec 29 2004", "subsets": [ { "dataset_id": "GDS955", "description": "control", "sample_id": [ "GSM19311", "GSM19313", "GSM19314", "GSM19316", "GSM19318", "GSM19320", "GSM19322", "GSM19324", "GSM19326", "GSM19328", "GSM19330", "GSM19332", "GSM19334", "GSM19336", "GSM19338" ], "type": "agent", "id": "GDS955_1" }, { "dataset_id": "GDS955", "description": "kainate", "sample_id": [ "GSM19340", "GSM19342", "GSM19343", "GSM19344", "GSM19345", "GSM19346", "GSM19347", "GSM19348", "GSM19349", "GSM19350", "GSM19351", "GSM19352", "GSM19353", "GSM19354", "GSM19355" ], "type": "agent", "id": "GDS955_2" }, { "dataset_id": "GDS955", "description": "1 h", "sample_id": [ "GSM19311", "GSM19313", "GSM19314", "GSM19340", "GSM19342", "GSM19343" ], "type": "time", "id": "GDS955_3" }, { "dataset_id": "GDS955", "description": "6 h", "sample_id": [ "GSM19328", "GSM19330", "GSM19332", "GSM19350", "GSM19351", "GSM19352" ], "type": "time", "id": "GDS955_4" }, { "dataset_id": "GDS955", "description": "24 h", "sample_id": [ "GSM19322", "GSM19324", "GSM19326", "GSM19347", "GSM19348", "GSM19349" ], "type": "time", "id": "GDS955_5" }, { "dataset_id": "GDS955", "description": "72 h", "sample_id": [ "GSM19334", "GSM19336", "GSM19338", "GSM19353", "GSM19354", "GSM19355" ], "type": "time", "id": "GDS955_6" }, { "dataset_id": "GDS955", "description": "240 h", "sample_id": [ "GSM19316", "GSM19318", "GSM19320", "GSM19344", "GSM19345", "GSM19346" ], "type": "time", "id": "GDS955_7" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS955", "version": 1.0, "instances": "30", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS955.tab", "compression": "gz" } ], [ [ "GDS956.tab" ], { "title": "Dopamine neurons from substantia nigra pars compacta and ventral tegmental area", "description": "Expression profiling of dopaminergic neurons of the substantia nigra pars compacta (SNc) and the ventral tegmental area. Neurons from normal animals isolated using laser capture microdissection. SNc dopaminergic neurons degenerate in Parkinson's disease.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1157", "order": "none", "update_date": "Dec 29 2004", "subsets": [ { "dataset_id": "GDS956", "description": "ventral tegmental area", "sample_id": [ "GSM19329", "GSM19331", "GSM19333", "GSM19335", "GSM19337", "GSM19339", "GSM19341" ], "type": "tissue", "id": "GDS956_1" }, { "dataset_id": "GDS956", "description": "substantia nigra pars compacta", "sample_id": [ "GSM19312", "GSM19315", "GSM19317", "GSM19319", "GSM19321", "GSM19323", "GSM19325", "GSM19327" ], "type": "tissue", "id": "GDS956_2" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS956", "version": 1.0, "instances": "15", "variables": 6077, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS956.tab", "compression": "gz" } ], [ [ "GDS958.tab" ], { "title": "Asthma and interleukin 13 (MOE430A)", "description": "Expression profiling of lung tissue from interleukin 13 (IL-13) knockout mice treated with house dust mite allergen. IL-13 mediates the development of asthma by causing hyperreactivity of the airway and mucus overproduction in the lung.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1301", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS958", "description": "wild type", "sample_id": [ "GSM21415", "GSM21418", "GSM21420", "GSM21422", "GSM21424", "GSM21426" ], "type": "genotype/variation", "id": "GDS958_1" }, { "dataset_id": "GDS958", "description": "IL-13 knockout", "sample_id": [ "GSM21403", "GSM21405", "GSM21407", "GSM21409", "GSM21411", "GSM21413" ], "type": "genotype/variation", "id": "GDS958_2" }, { "dataset_id": "GDS958", "description": "allergen", "sample_id": [ "GSM21415", "GSM21418", "GSM21420", "GSM21403", "GSM21405", "GSM21407" ], "type": "agent", "id": "GDS958_3" }, { "dataset_id": "GDS958", "description": "control", "sample_id": [ "GSM21422", "GSM21424", "GSM21426", "GSM21409", "GSM21411", "GSM21413" ], "type": "agent", "id": "GDS958_4" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS958", "version": 1.0, "instances": "12", "variables": 13879, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS958.tab", "compression": "gz" } ], [ [ "GDS959.tab" ], { "title": "Asthma and interleukin 13 (MOE430B)", "description": "Expression profiling of lung tissue from interleukin 13 (IL-13) knockout mice treated with house dust mite allergen. IL-13 mediates the development of asthma by causing hyperreactivity of the airway and mucus overproduction in the lung.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL340", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22575", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1301", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS959", "description": "wild type", "sample_id": [ "GSM21417", "GSM21419", "GSM21421", "GSM21423", "GSM21425", "GSM21427" ], "type": "genotype/variation", "id": "GDS959_1" }, { "dataset_id": "GDS959", "description": "IL-13 knockout", "sample_id": [ "GSM21404", "GSM21406", "GSM21408", "GSM21410", "GSM21412", "GSM21414" ], "type": "genotype/variation", "id": "GDS959_2" }, { "dataset_id": "GDS959", "description": "allergen", "sample_id": [ "GSM21417", "GSM21419", "GSM21421", "GSM21404", "GSM21406", "GSM21408" ], "type": "agent", "id": "GDS959_3" }, { "dataset_id": "GDS959", "description": "control", "sample_id": [ "GSM21423", "GSM21425", "GSM21427", "GSM21410", "GSM21412", "GSM21414" ], "type": "agent", "id": "GDS959_4" } ], "taxid": "10090", "genes": 16839, "aggregation_function": "mean", "name": "GDS959", "version": 1.0, "instances": "12", "variables": 16842, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS959.tab", "compression": "gz" } ], [ [ "GDS96.tab" ], { "title": "Tryptophan metabolism (ecoli_4.3)", "description": "Analysis of changes in gene expression elicited by perturbations of tryptophan metabolism using strains with mutations that affect tryptophan metabolism.", "type": "Expression profiling by array", "pubmed_id": "11027315", "platform": "GPL17", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4896", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "9", "value_type": "log ratio", "reference_series": "GSE7", "order": "none", "update_date": "Jul 17 2003", "subsets": [ { "dataset_id": "GDS96", "description": "no tryptophan", "sample_id": [ "GSM515", "GSM516", "GSM517", "GSM519" ], "type": "agent", "id": "GDS96_1" }, { "dataset_id": "GDS96", "description": "tryptophan", "sample_id": [ "GSM531", "GSM532", "GSM533", "GSM534", "GSM565" ], "type": "agent", "id": "GDS96_2" }, { "dataset_id": "GDS96", "description": "5 minute", "sample_id": [ "GSM515", "GSM531" ], "type": "time", "id": "GDS96_3" }, { "dataset_id": "GDS96", "description": "15 minute", "sample_id": [ "GSM516", "GSM532" ], "type": "time", "id": "GDS96_4" }, { "dataset_id": "GDS96", "description": "30 minute", "sample_id": [ "GSM517", "GSM533" ], "type": "time", "id": "GDS96_5" }, { "dataset_id": "GDS96", "description": "60 minute", "sample_id": [ "GSM519", "GSM534", "GSM565" ], "type": "time", "id": "GDS96_6" } ], "taxid": "562", "genes": 4272, "aggregation_function": "mean", "name": "GDS96", "version": 1.0, "instances": "9", "variables": 4275, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS96.tab", "compression": "gz" } ], [ [ "GDS960.tab" ], { "title": "Estrogen effect on lung: time course", "description": "Expression profiling of lungs from ovariectomized animals 3 and 6 hours following estrogen treatment. Estrogen prevents diminished alveoli formation in ovariectomized immature animals, and reverses the loss of alveoli in ovariectomized adults.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "28", "value_type": "count", "reference_series": "GSE1303", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS960", "description": "3 h", "sample_id": [ "GSM21265", "GSM21267", "GSM21268", "GSM21269", "GSM21271", "GSM21272", "GSM21274", "GSM21284", "GSM21285", "GSM21286", "GSM21287", "GSM21288", "GSM21289", "GSM21290", "GSM21291", "GSM47072" ], "type": "time", "id": "GDS960_1" }, { "dataset_id": "GDS960", "description": "6 h", "sample_id": [ "GSM21275", "GSM21277", "GSM21278", "GSM21280", "GSM21281", "GSM21283", "GSM21292", "GSM21293", "GSM21294", "GSM21295", "GSM21296", "GSM21297" ], "type": "time", "id": "GDS960_2" }, { "dataset_id": "GDS960", "description": "left lung", "sample_id": [ "GSM21265", "GSM21268", "GSM21271", "GSM21272", "GSM21275", "GSM21278", "GSM21281", "GSM21284", "GSM21286", "GSM21288", "GSM21290", "GSM21292", "GSM21294", "GSM21296" ], "type": "tissue", "id": "GDS960_3" }, { "dataset_id": "GDS960", "description": "right lung", "sample_id": [ "GSM21267", "GSM21269", "GSM21274", "GSM21277", "GSM21280", "GSM21283", "GSM21285", "GSM21287", "GSM21289", "GSM21291", "GSM21293", "GSM21295", "GSM21297", "GSM47072" ], "type": "tissue", "id": "GDS960_4" }, { "dataset_id": "GDS960", "description": "control", "sample_id": [ "GSM21265", "GSM21267", "GSM21268", "GSM21269", "GSM21271", "GSM21272", "GSM21274", "GSM21275", "GSM21277", "GSM21278", "GSM21280", "GSM21281", "GSM21283", "GSM47072" ], "type": "agent", "id": "GDS960_5" }, { "dataset_id": "GDS960", "description": "estrogen", "sample_id": [ "GSM21284", "GSM21285", "GSM21286", "GSM21287", "GSM21288", "GSM21289", "GSM21290", "GSM21291", "GSM21292", "GSM21293", "GSM21294", "GSM21295", "GSM21296", "GSM21297" ], "type": "agent", "id": "GDS960_6" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS960", "version": 1.0, "instances": "28", "variables": 13880, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS960.tab", "compression": "gz" } ], [ [ "GDS961.tab" ], { "title": "Diabetic nephropathy", "description": "Comparison of glomeruli from kidneys with diabetic nephropathy (DN) and glomeruli from kidneys of healthy individuals. Progression of DN may be due to diminished tissue repair capability.", "type": "Expression profiling by array", "pubmed_id": "15042541", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1009", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS961", "description": "normal", "sample_id": [ "GSM15965", "GSM15966", "GSM15967" ], "type": "disease state", "id": "GDS961_1" }, { "dataset_id": "GDS961", "description": "diabetic nephropathy", "sample_id": [ "GSM15968", "GSM15969", "GSM15970" ], "type": "disease state", "id": "GDS961_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS961", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS961.tab", "compression": "gz" } ], [ [ "GDS962.tab" ], { "title": "Peripheral blood mononuclear cells and the effect of exercise", "description": "Peripheral blood mononuclear cells (PBMC) were isolated from blood samples taken from healthy male subjects before, immediately after, and 60 minutes after 30 minutes of exercise. Brisk activation and deactivation of genes associated with stress, inflammation, and tissue repair observed.", "type": "Expression profiling by array", "pubmed_id": "15194674", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1140", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS962", "description": "before exercise", "sample_id": [ "GSM19083", "GSM19084", "GSM19089", "GSM19092", "GSM19095" ], "type": "time", "id": "GDS962_1" }, { "dataset_id": "GDS962", "description": "after exercise", "sample_id": [ "GSM19085", "GSM19087", "GSM19090", "GSM19093", "GSM19096" ], "type": "time", "id": "GDS962_2" }, { "dataset_id": "GDS962", "description": "60 min after exercise", "sample_id": [ "GSM19086", "GSM19088", "GSM19091", "GSM19094", "GSM19097" ], "type": "time", "id": "GDS962_3" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS962", "version": 1.0, "instances": "15", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS962.tab", "compression": "gz" } ], [ [ "GDS963.tab" ], { "title": "Macular degeneration and dermal fibroblast response to sublethal oxidative stress", "description": "Expression profiling of dermal fibroblasts from patients with macular degeneration. Fibroblasts subjected to sublethal oxidative stress. This study tests the hypothesis that patients with macular degeneration have an abnormal response to cellular injury in sites other than the eye.", "type": "Expression profiling by array", "pubmed_id": "16109308", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "36", "value_type": "count", "reference_series": "GSE1719", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS963", "description": "normal", "sample_id": [ "GSM29059", "GSM29060", "GSM29061", "GSM29062", "GSM29063", "GSM29064", "GSM29065", "GSM29066", "GSM29067", "GSM29068", "GSM29069", "GSM29070", "GSM29071", "GSM29072", "GSM29074", "GSM29075", "GSM29076", "GSM29078" ], "type": "disease state", "id": "GDS963_1" }, { "dataset_id": "GDS963", "description": "macular degeneration", "sample_id": [ "GSM29079", "GSM29081", "GSM29082", "GSM29084", "GSM29085", "GSM29087", "GSM29088", "GSM29090", "GSM29091", "GSM29092", "GSM29093", "GSM29095", "GSM29096", "GSM29097", "GSM29099", "GSM29100", "GSM29102", "GSM29103" ], "type": "disease state", "id": "GDS963_2" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS963", "version": 1.0, "instances": "36", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS963.tab", "compression": "gz" } ], [ [ "GDS964.tab" ], { "title": "Methylprednisolone effect on kidney: time course (RAE230A)", "description": "Expression profiling of kidneys from animals treated with methylprednisolone. Kidneys examined at various time points up to 72 hours following methylprednisolone treatment. Results provide insight into prednisone pharmacodynamics.", "type": "Expression profiling by array", "pubmed_id": "15985454", "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "53", "value_type": "count", "reference_series": "GSE1721", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS964", "description": "control", "sample_id": [ "GSM29120", "GSM29122", "GSM29124", "GSM29126" ], "type": "agent", "id": "GDS964_1" }, { "dataset_id": "GDS964", "description": "methylprednisolone", "sample_id": [ "GSM29111", "GSM29112", "GSM29113", "GSM29114", "GSM29115", "GSM29116", "GSM29117", "GSM29118", "GSM29127", "GSM29128", "GSM29129", "GSM29130", "GSM29131", "GSM29132", "GSM29133", "GSM29134", "GSM29135", "GSM29136", "GSM29139", "GSM29140", "GSM29142", "GSM29143", "GSM29144", "GSM29145", "GSM29146", "GSM29147", "GSM29148", "GSM29149", "GSM29150", "GSM29151", "GSM29152", "GSM29153", "GSM29154", "GSM29155", "GSM29156", "GSM29158", "GSM29160", "GSM29162", "GSM29163", "GSM29164", "GSM29165", "GSM29166", "GSM29167", "GSM29168", "GSM29169", "GSM29170", "GSM29171", "GSM29172", "GSM29258" ], "type": "agent", "id": "GDS964_2" }, { "dataset_id": "GDS964", "description": "0 h", "sample_id": [ "GSM29120", "GSM29122", "GSM29124", "GSM29126" ], "type": "time", "id": "GDS964_3" }, { "dataset_id": "GDS964", "description": "0.25 h", "sample_id": [ "GSM29111", "GSM29112", "GSM29172" ], "type": "time", "id": "GDS964_4" }, { "dataset_id": "GDS964", "description": "0.5 h", "sample_id": [ "GSM29113", "GSM29114", "GSM29115" ], "type": "time", "id": "GDS964_5" }, { "dataset_id": "GDS964", "description": "0.75 h", "sample_id": [ "GSM29116", "GSM29117", "GSM29118" ], "type": "time", "id": "GDS964_6" }, { "dataset_id": "GDS964", "description": "1 h", "sample_id": [ "GSM29133", "GSM29134", "GSM29135" ], "type": "time", "id": "GDS964_7" }, { "dataset_id": "GDS964", "description": "2 h", "sample_id": [ "GSM29136", "GSM29139", "GSM29140" ], "type": "time", "id": "GDS964_8" }, { "dataset_id": "GDS964", "description": "4 h", "sample_id": [ "GSM29148", "GSM29149", "GSM29150" ], "type": "time", "id": "GDS964_9" }, { "dataset_id": "GDS964", "description": "5 h", "sample_id": [ "GSM29153", "GSM29154", "GSM29155", "GSM29156" ], "type": "time", "id": "GDS964_10" }, { "dataset_id": "GDS964", "description": "5.5 h", "sample_id": [ "GSM29151", "GSM29152", "GSM29258" ], "type": "time", "id": "GDS964_11" }, { "dataset_id": "GDS964", "description": "6 h", "sample_id": [ "GSM29158", "GSM29160", "GSM29162" ], "type": "time", "id": "GDS964_12" }, { "dataset_id": "GDS964", "description": "7 h", "sample_id": [ "GSM29166", "GSM29167", "GSM29168" ], "type": "time", "id": "GDS964_13" }, { "dataset_id": "GDS964", "description": "8 h", "sample_id": [ "GSM29169", "GSM29170", "GSM29171" ], "type": "time", "id": "GDS964_14" }, { "dataset_id": "GDS964", "description": "12 h", "sample_id": [ "GSM29127", "GSM29128", "GSM29129" ], "type": "time", "id": "GDS964_15" }, { "dataset_id": "GDS964", "description": "18 h", "sample_id": [ "GSM29130", "GSM29131", "GSM29132" ], "type": "time", "id": "GDS964_16" }, { "dataset_id": "GDS964", "description": "30 h", "sample_id": [ "GSM29142", "GSM29143", "GSM29144" ], "type": "time", "id": "GDS964_17" }, { "dataset_id": "GDS964", "description": "48 h", "sample_id": [ "GSM29145", "GSM29146", "GSM29147" ], "type": "time", "id": "GDS964_18" }, { "dataset_id": "GDS964", "description": "72 h", "sample_id": [ "GSM29163", "GSM29164", "GSM29165" ], "type": "time", "id": "GDS964_19" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS964", "version": 1.0, "instances": "53", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS964.tab", "compression": "gz" } ], [ [ "GDS965.tab" ], { "title": "Methylprednisolone effect on kidney: time course (RG-U34A)", "description": "Expression profiling of kidneys from animals treated with methylprednisolone. Kidneys examined at various time points up to 6 hours following methylprednisolone treatment. Results provide insight into prednisone pharmacodynamics.", "type": "Expression profiling by array", "pubmed_id": "15985454", "platform": "GPL85", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "8799", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1721", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS965", "description": "control", "sample_id": [ "GSM29119", "GSM29121", "GSM29123", "GSM29125" ], "type": "agent", "id": "GDS965_1" }, { "dataset_id": "GDS965", "description": "methylprednisolone", "sample_id": [ "GSM29137", "GSM29138", "GSM29141", "GSM29157", "GSM29159", "GSM29161" ], "type": "agent", "id": "GDS965_2" }, { "dataset_id": "GDS965", "description": "0 h", "sample_id": [ "GSM29119", "GSM29121", "GSM29123", "GSM29125" ], "type": "time", "id": "GDS965_3" }, { "dataset_id": "GDS965", "description": "2 h", "sample_id": [ "GSM29137", "GSM29138", "GSM29141" ], "type": "time", "id": "GDS965_4" }, { "dataset_id": "GDS965", "description": "6 h", "sample_id": [ "GSM29157", "GSM29159", "GSM29161" ], "type": "time", "id": "GDS965_5" } ], "taxid": "10116", "genes": 6075, "aggregation_function": "mean", "name": "GDS965", "version": 1.0, "instances": "10", "variables": 6078, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS965.tab", "compression": "gz" } ], [ [ "GDS967.tab" ], { "title": "Glycine receptor beta subunit mutant model for hyperekplexia", "description": "Analysis of spinal cords from glycine receptor beta subunit mutants with alleviating or severe spastic symptoms. Mutants at various ages up to 6 months examined. Results provide insight into the basis for tendency of hyperekplexia (startle disease) symptoms to alleviate with age.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "16", "value_type": "count", "reference_series": "GSE1800", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS967", "description": "no symptoms", "sample_id": [ "GSM30989", "GSM30991", "GSM30992", "GSM30993", "GSM30994", "GSM30995", "GSM30997", "GSM31005", "GSM31006", "GSM31007" ], "type": "disease state", "id": "GDS967_1" }, { "dataset_id": "GDS967", "description": "mild early symptoms", "sample_id": [ "GSM30999", "GSM31002" ], "type": "disease state", "id": "GDS967_2" }, { "dataset_id": "GDS967", "description": "mild alleviating symptoms", "sample_id": [ "GSM30996", "GSM30998" ], "type": "disease state", "id": "GDS967_3" }, { "dataset_id": "GDS967", "description": "severe symptoms", "sample_id": [ "GSM31000", "GSM31001" ], "type": "disease state", "id": "GDS967_4" }, { "dataset_id": "GDS967", "description": "1 mo", "sample_id": [ "GSM31005", "GSM31006" ], "type": "age", "id": "GDS967_5" }, { "dataset_id": "GDS967", "description": "2 mo", "sample_id": [ "GSM30999", "GSM31002" ], "type": "age", "id": "GDS967_6" }, { "dataset_id": "GDS967", "description": "3 mo", "sample_id": [ "GSM31000", "GSM31001" ], "type": "age", "id": "GDS967_7" }, { "dataset_id": "GDS967", "description": "6 mo", "sample_id": [ "GSM30996", "GSM30998" ], "type": "age", "id": "GDS967_8" }, { "dataset_id": "GDS967", "description": "9 mo", "sample_id": [ "GSM30993", "GSM30994", "GSM30995", "GSM30997" ], "type": "age", "id": "GDS967_9" }, { "dataset_id": "GDS967", "description": "12 mo", "sample_id": [ "GSM30989", "GSM30991", "GSM30992", "GSM31007" ], "type": "age", "id": "GDS967_10" }, { "dataset_id": "GDS967", "description": "male", "sample_id": [ "GSM31005", "GSM31006", "GSM30995", "GSM30997", "GSM30991", "GSM30992", "GSM31000", "GSM31001" ], "type": "gender", "id": "GDS967_11" }, { "dataset_id": "GDS967", "description": "female", "sample_id": [ "GSM30993", "GSM30994", "GSM30989", "GSM31007", "GSM30999", "GSM31002", "GSM30996", "GSM30998" ], "type": "gender", "id": "GDS967_12" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS967", "version": 1.0, "instances": "16", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS967.tab", "compression": "gz" } ], [ [ "GDS968.tab" ], { "title": "Radiation therapy toxicity association with abnormal transcriptional response to DNA damage", "description": "Analysis of UV and IR irradiated lymphoblastoid cell lines derived from the peripheral blood of patients with acute radiation toxicity. Samples taken 2 months after the completion of radiation therapy. Results provide insight into the role of the response to DNA damage in radiation toxicity.", "type": "Expression profiling by array", "pubmed_id": "15096622", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "171", "value_type": "count", "reference_series": "GSE1725", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS968", "description": "healthy control", "sample_id": [ "GSM29783", "GSM29784", "GSM29785", "GSM29786", "GSM29787", "GSM29788", "GSM29789", "GSM29790", "GSM29791", "GSM29792", "GSM29793", "GSM29794", "GSM29795", "GSM29796", "GSM29797", "GSM29798", "GSM29799", "GSM29800", "GSM29801", "GSM29802", "GSM29803", "GSM29804", "GSM29805", "GSM29806", "GSM29807", "GSM29814", "GSM29815", "GSM29816", "GSM29817", "GSM29819", "GSM29821", "GSM29822", "GSM29823", "GSM29824", "GSM29825", "GSM29826", "GSM29827", "GSM29828", "GSM29829", "GSM29830", "GSM29831", "GSM29832", "GSM29833", "GSM29834", "GSM29835" ], "type": "disease state", "id": "GDS968_1" }, { "dataset_id": "GDS968", "description": "skin cancer control", "sample_id": [ "GSM29836", "GSM29837", "GSM29838", "GSM29839", "GSM29840", "GSM29841", "GSM29842", "GSM29843", "GSM29844", "GSM29845", "GSM29846", "GSM29847", "GSM29848", "GSM29849", "GSM29850", "GSM29851", "GSM29852", "GSM29853", "GSM29854", "GSM29855", "GSM29856", "GSM29857", "GSM29858", "GSM29859", "GSM29860", "GSM29861", "GSM29862", "GSM29863", "GSM29864", "GSM29865", "GSM29866", "GSM29867", "GSM29868", "GSM29869", "GSM29870", "GSM29871", "GSM29872", "GSM29873", "GSM29874", "GSM29875", "GSM29876", "GSM29877", "GSM29878", "GSM29879", "GSM29880" ], "type": "disease state", "id": "GDS968_2" }, { "dataset_id": "GDS968", "description": "limited toxicity control", "sample_id": [ "GSM29881", "GSM29882", "GSM29883", "GSM29884", "GSM29885", "GSM29886", "GSM29887", "GSM29888", "GSM29889", "GSM29890", "GSM29891", "GSM29892", "GSM29893", "GSM29894", "GSM29895", "GSM29896", "GSM29897", "GSM29898", "GSM29899", "GSM29900", "GSM29901", "GSM29902", "GSM29903", "GSM29904", "GSM29905", "GSM29906", "GSM29907", "GSM29908", "GSM29909", "GSM29910", "GSM29955", "GSM29956", "GSM29957", "GSM29958", "GSM29959", "GSM29960", "GSM29961", "GSM29962", "GSM29963" ], "type": "disease state", "id": "GDS968_3" }, { "dataset_id": "GDS968", "description": "acute toxicity", "sample_id": [ "GSM29964", "GSM29965", "GSM29966", "GSM29967", "GSM29968", "GSM29969", "GSM29970", "GSM29971", "GSM29972", "GSM29973", "GSM29974", "GSM29975", "GSM29976", "GSM29977", "GSM29978", "GSM29979", "GSM29980", "GSM29981", "GSM29982", "GSM29983", "GSM29984", "GSM29985", "GSM29986", "GSM29987", "GSM29988", "GSM29989", "GSM29990", "GSM29991", "GSM29992", "GSM29993", "GSM29994", "GSM29995", "GSM29996", "GSM29997", "GSM29998", "GSM29999", "GSM30000", "GSM30001", "GSM30002", "GSM30003", "GSM30004", "GSM30005" ], "type": "disease state", "id": "GDS968_4" }, { "dataset_id": "GDS968", "description": "IR", "sample_id": [ "GSM29783", "GSM29786", "GSM29789", "GSM29792", "GSM29795", "GSM29798", "GSM29801", "GSM29804", "GSM29807", "GSM29816", "GSM29821", "GSM29824", "GSM29827", "GSM29830", "GSM29833", "GSM29836", "GSM29839", "GSM29842", "GSM29845", "GSM29848", "GSM29851", "GSM29854", "GSM29857", "GSM29860", "GSM29863", "GSM29866", "GSM29869", "GSM29872", "GSM29875", "GSM29878", "GSM29881", "GSM29884", "GSM29887", "GSM29890", "GSM29893", "GSM29896", "GSM29899", "GSM29902", "GSM29905", "GSM29908", "GSM29955", "GSM29958", "GSM29961", "GSM29964", "GSM29967", "GSM29970", "GSM29973", "GSM29976", "GSM29979", "GSM29982", "GSM29985", "GSM29988", "GSM29991", "GSM29994", "GSM29997", "GSM30000", "GSM30003" ], "type": "agent", "id": "GDS968_5" }, { "dataset_id": "GDS968", "description": "none", "sample_id": [ "GSM29784", "GSM29787", "GSM29790", "GSM29793", "GSM29796", "GSM29799", "GSM29802", "GSM29805", "GSM29814", "GSM29817", "GSM29822", "GSM29825", "GSM29828", "GSM29831", "GSM29834", "GSM29837", "GSM29840", "GSM29843", "GSM29846", "GSM29849", "GSM29852", "GSM29855", "GSM29858", "GSM29861", "GSM29864", "GSM29867", "GSM29870", "GSM29873", "GSM29876", "GSM29879", "GSM29882", "GSM29885", "GSM29888", "GSM29891", "GSM29894", "GSM29897", "GSM29900", "GSM29903", "GSM29906", "GSM29909", "GSM29956", "GSM29959", "GSM29962", "GSM29965", "GSM29968", "GSM29971", "GSM29974", "GSM29977", "GSM29980", "GSM29983", "GSM29986", "GSM29989", "GSM29992", "GSM29995", "GSM29998", "GSM30001", "GSM30004" ], "type": "agent", "id": "GDS968_6" }, { "dataset_id": "GDS968", "description": "UV", "sample_id": [ "GSM29785", "GSM29788", "GSM29791", "GSM29794", "GSM29797", "GSM29800", "GSM29803", "GSM29806", "GSM29815", "GSM29819", "GSM29823", "GSM29826", "GSM29829", "GSM29832", "GSM29835", "GSM29838", "GSM29841", "GSM29844", "GSM29847", "GSM29850", "GSM29853", "GSM29856", "GSM29859", "GSM29862", "GSM29865", "GSM29868", "GSM29871", "GSM29874", "GSM29877", "GSM29880", "GSM29883", "GSM29886", "GSM29889", "GSM29892", "GSM29895", "GSM29898", "GSM29901", "GSM29904", "GSM29907", "GSM29910", "GSM29957", "GSM29960", "GSM29963", "GSM29966", "GSM29969", "GSM29972", "GSM29975", "GSM29978", "GSM29981", "GSM29984", "GSM29987", "GSM29990", "GSM29993", "GSM29996", "GSM29999", "GSM30002", "GSM30005" ], "type": "agent", "id": "GDS968_7" }, { "dataset_id": "GDS968", "description": "NoCa1", "sample_id": [ "GSM29783", "GSM29784", "GSM29785" ], "type": "individual", "id": "GDS968_8" }, { "dataset_id": "GDS968", "description": "NoCa2", "sample_id": [ "GSM29786", "GSM29787", "GSM29788" ], "type": "individual", "id": "GDS968_9" }, { "dataset_id": "GDS968", "description": "NoCa3", "sample_id": [ "GSM29789", "GSM29790", "GSM29791" ], "type": "individual", "id": "GDS968_10" }, { "dataset_id": "GDS968", "description": "NoCa4", "sample_id": [ "GSM29792", "GSM29793", "GSM29794" ], "type": "individual", "id": "GDS968_11" }, { "dataset_id": "GDS968", "description": "NoCa5", "sample_id": [ "GSM29795", "GSM29796", "GSM29797" ], "type": "individual", "id": "GDS968_12" }, { "dataset_id": "GDS968", "description": "NoCa6", "sample_id": [ "GSM29798", "GSM29799", "GSM29800" ], "type": "individual", "id": "GDS968_13" }, { "dataset_id": "GDS968", "description": "NoCa7", "sample_id": [ "GSM29801", "GSM29802", "GSM29803" ], "type": "individual", "id": "GDS968_14" }, { "dataset_id": "GDS968", "description": "NoCa8", "sample_id": [ "GSM29804", "GSM29805", "GSM29806" ], "type": "individual", "id": "GDS968_15" }, { "dataset_id": "GDS968", "description": "NoCa9", "sample_id": [ "GSM29807", "GSM29814", "GSM29815" ], "type": "individual", "id": "GDS968_16" }, { "dataset_id": "GDS968", "description": "NoCa10", "sample_id": [ "GSM29816", "GSM29817", "GSM29819" ], "type": "individual", "id": "GDS968_17" }, { "dataset_id": "GDS968", "description": "NoCa11", "sample_id": [ "GSM29821", "GSM29822", "GSM29823" ], "type": "individual", "id": "GDS968_18" }, { "dataset_id": "GDS968", "description": "NoCa12", "sample_id": [ "GSM29824", "GSM29825", "GSM29826" ], "type": "individual", "id": "GDS968_19" }, { "dataset_id": "GDS968", "description": "NoCa13", "sample_id": [ "GSM29827", "GSM29828", "GSM29829" ], "type": "individual", "id": "GDS968_20" }, { "dataset_id": "GDS968", "description": "NoCa14", "sample_id": [ "GSM29830", "GSM29831", "GSM29832" ], "type": "individual", "id": "GDS968_21" }, { "dataset_id": "GDS968", "description": "NoCa15", "sample_id": [ "GSM29833", "GSM29834", "GSM29835" ], "type": "individual", "id": "GDS968_22" }, { "dataset_id": "GDS968", "description": "SkCa1", "sample_id": [ "GSM29836", "GSM29837", "GSM29838" ], "type": "individual", "id": "GDS968_23" }, { "dataset_id": "GDS968", "description": "SkCa2", "sample_id": [ "GSM29839", "GSM29840", "GSM29841" ], "type": "individual", "id": "GDS968_24" }, { "dataset_id": "GDS968", "description": "SkCa3", "sample_id": [ "GSM29842", "GSM29843", "GSM29844" ], "type": "individual", "id": "GDS968_25" }, { "dataset_id": "GDS968", "description": "SkCa4", "sample_id": [ "GSM29845", "GSM29846", "GSM29847" ], "type": "individual", "id": "GDS968_26" }, { "dataset_id": "GDS968", "description": "SkCa5", "sample_id": [ "GSM29848", "GSM29849", "GSM29850" ], "type": "individual", "id": "GDS968_27" }, { "dataset_id": "GDS968", "description": "SkCa6", "sample_id": [ "GSM29851", "GSM29852", "GSM29853" ], "type": "individual", "id": "GDS968_28" }, { "dataset_id": "GDS968", "description": "SkCa7", "sample_id": [ "GSM29854", "GSM29855", "GSM29856" ], "type": "individual", "id": "GDS968_29" }, { "dataset_id": "GDS968", "description": "SkCa8", "sample_id": [ "GSM29857", "GSM29858", "GSM29859" ], "type": "individual", "id": "GDS968_30" }, { "dataset_id": "GDS968", "description": "SkCa9", "sample_id": [ "GSM29860", "GSM29861", "GSM29862" ], "type": "individual", "id": "GDS968_31" }, { "dataset_id": "GDS968", "description": "SkCa10", "sample_id": [ "GSM29863", "GSM29864", "GSM29865" ], "type": "individual", "id": "GDS968_32" }, { "dataset_id": "GDS968", "description": "SkCa11", "sample_id": [ "GSM29866", "GSM29867", "GSM29868" ], "type": "individual", "id": "GDS968_33" }, { "dataset_id": "GDS968", "description": "SkCa12", "sample_id": [ "GSM29869", "GSM29870", "GSM29871" ], "type": "individual", "id": "GDS968_34" }, { "dataset_id": "GDS968", "description": "SkCa13", "sample_id": [ "GSM29872", "GSM29873", "GSM29874" ], "type": "individual", "id": "GDS968_35" }, { "dataset_id": "GDS968", "description": "SkCa14", "sample_id": [ "GSM29875", "GSM29876", "GSM29877" ], "type": "individual", "id": "GDS968_36" }, { "dataset_id": "GDS968", "description": "SkCa15", "sample_id": [ "GSM29878", "GSM29879", "GSM29880" ], "type": "individual", "id": "GDS968_37" }, { "dataset_id": "GDS968", "description": "RadC1", "sample_id": [ "GSM29881", "GSM29882", "GSM29883" ], "type": "individual", "id": "GDS968_38" }, { "dataset_id": "GDS968", "description": "RadC2", "sample_id": [ "GSM29884", "GSM29885", "GSM29886" ], "type": "individual", "id": "GDS968_39" }, { "dataset_id": "GDS968", "description": "RadC3", "sample_id": [ "GSM29887", "GSM29888", "GSM29889" ], "type": "individual", "id": "GDS968_40" }, { "dataset_id": "GDS968", "description": "RadC4", "sample_id": [ "GSM29890", "GSM29891", "GSM29892" ], "type": "individual", "id": "GDS968_41" }, { "dataset_id": "GDS968", "description": "RadC5", "sample_id": [ "GSM29893", "GSM29894", "GSM29895" ], "type": "individual", "id": "GDS968_42" }, { "dataset_id": "GDS968", "description": "RadC6", "sample_id": [ "GSM29896", "GSM29897", "GSM29898" ], "type": "individual", "id": "GDS968_43" }, { "dataset_id": "GDS968", "description": "RadC7", "sample_id": [ "GSM29899", "GSM29900", "GSM29901" ], "type": "individual", "id": "GDS968_44" }, { "dataset_id": "GDS968", "description": "RadC8", "sample_id": [ "GSM29902", "GSM29903", "GSM29904" ], "type": "individual", "id": "GDS968_45" }, { "dataset_id": "GDS968", "description": "RadC9", "sample_id": [ "GSM29905", "GSM29906", "GSM29907" ], "type": "individual", "id": "GDS968_46" }, { "dataset_id": "GDS968", "description": "RadC10", "sample_id": [ "GSM29908", "GSM29909", "GSM29910" ], "type": "individual", "id": "GDS968_47" }, { "dataset_id": "GDS968", "description": "RadC11", "sample_id": [ "GSM29955", "GSM29956", "GSM29957" ], "type": "individual", "id": "GDS968_48" }, { "dataset_id": "GDS968", "description": "RadC12", "sample_id": [ "GSM29958", "GSM29959", "GSM29960" ], "type": "individual", "id": "GDS968_49" }, { "dataset_id": "GDS968", "description": "RadC13", "sample_id": [ "GSM29961", "GSM29962", "GSM29963" ], "type": "individual", "id": "GDS968_50" }, { "dataset_id": "GDS968", "description": "Rad1", "sample_id": [ "GSM29964", "GSM29965", "GSM29966" ], "type": "individual", "id": "GDS968_51" }, { "dataset_id": "GDS968", "description": "Rad2", "sample_id": [ "GSM29967", "GSM29968", "GSM29969" ], "type": "individual", "id": "GDS968_52" }, { "dataset_id": "GDS968", "description": "Rad3", "sample_id": [ "GSM29970", "GSM29971", "GSM29972" ], "type": "individual", "id": "GDS968_53" }, { "dataset_id": "GDS968", "description": "Rad4", "sample_id": [ "GSM29973", "GSM29974", "GSM29975" ], "type": "individual", "id": "GDS968_54" }, { "dataset_id": "GDS968", "description": "RadS5", "sample_id": [ "GSM29976", "GSM29977", "GSM29978" ], "type": "individual", "id": "GDS968_55" }, { "dataset_id": "GDS968", "description": "RadS6", "sample_id": [ "GSM29979", "GSM29980", "GSM29981" ], "type": "individual", "id": "GDS968_56" }, { "dataset_id": "GDS968", "description": "RadS7", "sample_id": [ "GSM29982", "GSM29983", "GSM29984" ], "type": "individual", "id": "GDS968_57" }, { "dataset_id": "GDS968", "description": "RadS8", "sample_id": [ "GSM29985", "GSM29986", "GSM29987" ], "type": "individual", "id": "GDS968_58" }, { "dataset_id": "GDS968", "description": "RadS9", "sample_id": [ "GSM29988", "GSM29989", "GSM29990" ], "type": "individual", "id": "GDS968_59" }, { "dataset_id": "GDS968", "description": "RadS10", "sample_id": [ "GSM29991", "GSM29992", "GSM29993" ], "type": "individual", "id": "GDS968_60" }, { "dataset_id": "GDS968", "description": "RadS11", "sample_id": [ "GSM29994", "GSM29995", "GSM29996" ], "type": "individual", "id": "GDS968_61" }, { "dataset_id": "GDS968", "description": "RadS12", "sample_id": [ "GSM29997", "GSM29998", "GSM29999" ], "type": "individual", "id": "GDS968_62" }, { "dataset_id": "GDS968", "description": "RadS13", "sample_id": [ "GSM30000", "GSM30001", "GSM30002" ], "type": "individual", "id": "GDS968_63" }, { "dataset_id": "GDS968", "description": "RadS14", "sample_id": [ "GSM30003", "GSM30004", "GSM30005" ], "type": "individual", "id": "GDS968_64" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS968", "version": 1.0, "instances": "171", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS968.tab", "compression": "gz" } ], [ [ "GDS969.tab" ], { "title": "Bone marrow prolonged storage effects", "description": "Analysis of impact of pre-analytical handling of bone marrow (BM). Time delays of 0, 24, or 48 hours between sample aspiration and RNA extraction examined. Storage of BM has dramatic effects on mRNA expression of individual transcripts.", "type": "Expression profiling by array", "pubmed_id": "15238145", "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1347", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS969", "description": "0 h", "sample_id": [ "GSM21872", "GSM21875", "GSM21878" ], "type": "time", "id": "GDS969_1" }, { "dataset_id": "GDS969", "description": "24 h", "sample_id": [ "GSM21873", "GSM21876", "GSM21879" ], "type": "time", "id": "GDS969_2" }, { "dataset_id": "GDS969", "description": "48 h", "sample_id": [ "GSM21874", "GSM21877", "GSM21880" ], "type": "time", "id": "GDS969_3" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS969", "version": 1.0, "instances": "9", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS969.tab", "compression": "gz" } ], [ [ "GDS970.tab" ], { "title": "Bile ductular differentiation of embryonic hepatoblasts: time course", "description": "Temporal analysis of hepatoblast cell line 3 (HBC-3) cells grown on Matrigel to induce in vitro bile ductular differentiation. HBC-3 line is derived from liver diverticulum on day 9.5 of gestation.", "type": "Expression profiling by array", "pubmed_id": "", "platform": "GPL1205", "platform_organism": "Mus musculus", "platform_technology_type": "spotted oligonucleotide", "feature_count": "26798", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "2", "sample_count": "24", "value_type": "log ratio", "reference_series": "GSE1348", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS970", "description": "0 d", "sample_id": [ "GSM21882", "GSM21883", "GSM21884" ], "type": "time", "id": "GDS970_1" }, { "dataset_id": "GDS970", "description": "1 d", "sample_id": [ "GSM21885", "GSM21886", "GSM21887" ], "type": "time", "id": "GDS970_2" }, { "dataset_id": "GDS970", "description": "2 d", "sample_id": [ "GSM21888", "GSM21889", "GSM21890" ], "type": "time", "id": "GDS970_3" }, { "dataset_id": "GDS970", "description": "3 d", "sample_id": [ "GSM21891", "GSM21892", "GSM21893" ], "type": "time", "id": "GDS970_4" }, { "dataset_id": "GDS970", "description": "4 d", "sample_id": [ "GSM21894", "GSM21895", "GSM21896" ], "type": "time", "id": "GDS970_5" }, { "dataset_id": "GDS970", "description": "5 d", "sample_id": [ "GSM21897", "GSM21898", "GSM21899" ], "type": "time", "id": "GDS970_6" }, { "dataset_id": "GDS970", "description": "6 d", "sample_id": [ "GSM21900", "GSM21901", "GSM21902" ], "type": "time", "id": "GDS970_7" }, { "dataset_id": "GDS970", "description": "7 d", "sample_id": [ "GSM21903", "GSM21904", "GSM21905" ], "type": "time", "id": "GDS970_8" } ], "taxid": "10090", "genes": 20952, "aggregation_function": "mean", "name": "GDS970", "version": 1.0, "instances": "24", "variables": 20954, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS970.tab", "compression": "gz" } ], [ [ "GDS971.tab" ], { "title": "Rhabdomyosarcoma and Ewing's sarcoma comparison", "description": "Comparison of gene expression in 12 pediatric rhabdomyosarcomas (RMS) to that in 11 pediatric Ewing's sarcomas (EWS). 3 embryonic and 9 alveolar RMS tumors examined. RMS and EWS appear similar in routine histology. Results identify expression profiles that distinguish RMS from EWS.", "type": "Expression profiling by array", "pubmed_id": "15146558", "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "23", "value_type": "count", "reference_series": "GSE967", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS971", "description": "Ewing's sarcoma", "sample_id": [ "GSM15093", "GSM15094", "GSM15095", "GSM15096", "GSM15097", "GSM15098", "GSM15099", "GSM15100", "GSM15101", "GSM15102", "GSM15103" ], "type": "disease state", "id": "GDS971_1" }, { "dataset_id": "GDS971", "description": "embryonal rhabdomyosarcoma", "sample_id": [ "GSM15104", "GSM15105", "GSM15106" ], "type": "disease state", "id": "GDS971_2" }, { "dataset_id": "GDS971", "description": "alveolar rhabdomyosarcoma", "sample_id": [ "GSM15107", "GSM15108", "GSM15109", "GSM15110", "GSM15111", "GSM15112", "GSM15113", "GSM15114", "GSM15115" ], "type": "disease state", "id": "GDS971_3" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS971", "version": 1.0, "instances": "23", "variables": 9472, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS971.tab", "compression": "gz" } ], [ [ "GDS972.tab" ], { "title": "Methylprednisolone effect on liver: time course (RAE230A)", "description": "Expression profiling of liver from animals treated with methylprednisolone. Liver examined at various time points up to 168 hours following methylprednisolone treatment. Results provide insight into prednisone pharmacodynamics.", "type": "Expression profiling by array", "pubmed_id": [ "12808002", "19787073" ], "platform": "GPL341", "platform_organism": "Rattus norvegicus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "15923", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "44", "value_type": "count", "reference_series": "GSE487", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS972", "description": "0 h", "sample_id": [ "GSM29223", "GSM29224", "GSM29225", "GSM29226" ], "type": "time", "id": "GDS972_1" }, { "dataset_id": "GDS972", "description": "6 h", "sample_id": [ "GSM29211", "GSM29212", "GSM29213", "GSM29214" ], "type": "time", "id": "GDS972_2" }, { "dataset_id": "GDS972", "description": "10 h", "sample_id": [ "GSM29183", "GSM29184", "GSM29185", "GSM29186" ], "type": "time", "id": "GDS972_3" }, { "dataset_id": "GDS972", "description": "13 h", "sample_id": [ "GSM29187", "GSM29188", "GSM29189", "GSM29190" ], "type": "time", "id": "GDS972_4" }, { "dataset_id": "GDS972", "description": "18 h", "sample_id": [ "GSM29195", "GSM29196", "GSM29197", "GSM29198" ], "type": "time", "id": "GDS972_5" }, { "dataset_id": "GDS972", "description": "24 h", "sample_id": [ "GSM29199", "GSM29200", "GSM29201", "GSM29202" ], "type": "time", "id": "GDS972_6" }, { "dataset_id": "GDS972", "description": "36 h", "sample_id": [ "GSM29203", "GSM29204", "GSM29205", "GSM29206" ], "type": "time", "id": "GDS972_7" }, { "dataset_id": "GDS972", "description": "48 h", "sample_id": [ "GSM29207", "GSM29208", "GSM29209", "GSM29210" ], "type": "time", "id": "GDS972_8" }, { "dataset_id": "GDS972", "description": "72 h", "sample_id": [ "GSM29215", "GSM29216", "GSM29217", "GSM29218" ], "type": "time", "id": "GDS972_9" }, { "dataset_id": "GDS972", "description": "96 h", "sample_id": [ "GSM29219", "GSM29220", "GSM29221", "GSM29222" ], "type": "time", "id": "GDS972_10" }, { "dataset_id": "GDS972", "description": "168 h", "sample_id": [ "GSM29191", "GSM29192", "GSM29193", "GSM29194" ], "type": "time", "id": "GDS972_11" }, { "dataset_id": "GDS972", "description": "control", "sample_id": [ "GSM29223", "GSM29224", "GSM29225", "GSM29226" ], "type": "agent", "id": "GDS972_12" }, { "dataset_id": "GDS972", "description": "methylprednisolone", "sample_id": [ "GSM29183", "GSM29184", "GSM29185", "GSM29186", "GSM29187", "GSM29188", "GSM29189", "GSM29190", "GSM29191", "GSM29192", "GSM29193", "GSM29194", "GSM29195", "GSM29196", "GSM29197", "GSM29198", "GSM29199", "GSM29200", "GSM29201", "GSM29202", "GSM29203", "GSM29204", "GSM29205", "GSM29206", "GSM29207", "GSM29208", "GSM29209", "GSM29210", "GSM29211", "GSM29212", "GSM29213", "GSM29214", "GSM29215", "GSM29216", "GSM29217", "GSM29218", "GSM29219", "GSM29220", "GSM29221", "GSM29222" ], "type": "agent", "id": "GDS972_13" } ], "taxid": "10116", "genes": 13375, "aggregation_function": "mean", "name": "GDS972", "version": 1.0, "instances": "44", "variables": 13378, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS972.tab", "compression": "gz" } ], [ [ "GDS981.tab" ], { "title": "Uterine response to physiologic and plant-derived estrogen: time course", "description": "Temporal analysis of immature Alpk:APfCD-1 uterus response up to 72 hours after a single dose of physiologic estrogen 17beta-estradiol (E2) or phytoestrogen genistein (GEN).", "type": "Expression profiling by array", "pubmed_id": "15289156", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "21", "value_type": "count", "reference_series": "GSE1819", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS981", "description": "1 h", "sample_id": [ "GSM31735", "GSM31736", "GSM31737" ], "type": "time", "id": "GDS981_1" }, { "dataset_id": "GDS981", "description": "2 h", "sample_id": [ "GSM31738", "GSM31739", "GSM31740" ], "type": "time", "id": "GDS981_2" }, { "dataset_id": "GDS981", "description": "4 h", "sample_id": [ "GSM31741", "GSM31742", "GSM31743" ], "type": "time", "id": "GDS981_3" }, { "dataset_id": "GDS981", "description": "8 h", "sample_id": [ "GSM31744", "GSM31745", "GSM31746" ], "type": "time", "id": "GDS981_4" }, { "dataset_id": "GDS981", "description": "24 h", "sample_id": [ "GSM31747", "GSM31748", "GSM31749" ], "type": "time", "id": "GDS981_5" }, { "dataset_id": "GDS981", "description": "48 h", "sample_id": [ "GSM31750", "GSM31751", "GSM31752" ], "type": "time", "id": "GDS981_6" }, { "dataset_id": "GDS981", "description": "72 h", "sample_id": [ "GSM31753", "GSM31754", "GSM31755" ], "type": "time", "id": "GDS981_7" }, { "dataset_id": "GDS981", "description": "vehicle", "sample_id": [ "GSM31735", "GSM31738", "GSM31741", "GSM31744", "GSM31747", "GSM31750", "GSM31753" ], "type": "agent", "id": "GDS981_8" }, { "dataset_id": "GDS981", "description": "17beta-estradiol", "sample_id": [ "GSM31736", "GSM31739", "GSM31742", "GSM31745", "GSM31748", "GSM31751", "GSM31754" ], "type": "agent", "id": "GDS981_9" }, { "dataset_id": "GDS981", "description": "genistein", "sample_id": [ "GSM31737", "GSM31740", "GSM31743", "GSM31746", "GSM31749", "GSM31752", "GSM31755" ], "type": "agent", "id": "GDS981_10" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS981", "version": 1.0, "instances": "21", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS981.tab", "compression": "gz" } ], [ [ "GDS982.tab" ], { "title": "Uterine response to physiologic, plant-derived, and synthetic estrogen", "description": "Analysis of immature Alpk:APfCD-1 uterus 72 hours after 3 daily injections of physiologic estrogen 17beta-estradiol (E2), phytoestrogen genistein (GEN), or synthetic estrogen diethylstilbestrol (DES). Similarity in gene expression indicates synthetic estrogen may not pose unique threat to health.", "type": "Expression profiling by array", "pubmed_id": "15289156", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1839", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS982", "description": "vehicle", "sample_id": [ "GSM32181", "GSM32182", "GSM32183" ], "type": "agent", "id": "GDS982_1" }, { "dataset_id": "GDS982", "description": "genistein", "sample_id": [ "GSM32184", "GSM32185", "GSM32186" ], "type": "agent", "id": "GDS982_2" }, { "dataset_id": "GDS982", "description": "17beta-estradiol", "sample_id": [ "GSM32187", "GSM32188", "GSM32189" ], "type": "agent", "id": "GDS982_3" }, { "dataset_id": "GDS982", "description": "diethylstilbestrol", "sample_id": [ "GSM32190", "GSM32191", "GSM32192" ], "type": "agent", "id": "GDS982_4" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS982", "version": 1.0, "instances": "12", "variables": 9563, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS982.tab", "compression": "gz" } ], [ [ "GDS983.tab" ], { "title": "Abscisic acid and gibberellin effect on calluses", "description": "Analysis of calluses treated for 3 days with 50 uM of abscisic acid (ABA) or gibberellin (GA). ABA promotes seed dormancy, while GA promotes seed germination. Results provide insight into the crosstalk between ABA and GA regulated signaling pathways.", "type": "Expression profiling by array", "pubmed_id": "14982972", "platform": "GPL477", "platform_organism": "Oryza sativa", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22575", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE661", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS983", "description": "abscisic acid", "sample_id": [ "GSM9853", "GSM9854" ], "type": "agent", "id": "GDS983_1" }, { "dataset_id": "GDS983", "description": "gibberellin", "sample_id": [ "GSM9857", "GSM9858" ], "type": "agent", "id": "GDS983_2" } ], "taxid": "4530", "genes": 19982, "aggregation_function": "mean", "name": "GDS983", "version": 1.0, "instances": "4", "variables": 19984, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS983.tab", "compression": "gz" } ], [ [ "GDS984.tab" ], { "title": "Abscisic acid and gibberellin effect on calluses (dye-swap)", "description": "Analysis of calluses treated for 3 days with 50 uM of abscisic acid (ABA) or gibberellin (GA). ABA promotes seed dormancy, while GA promotes seed germination. Results provide insight into the crosstalk between ABA and GA regulated signaling pathways.", "type": "Expression profiling by array", "pubmed_id": "14982972", "platform": "GPL477", "platform_organism": "Oryza sativa", "platform_technology_type": "spotted oligonucleotide", "feature_count": "22575", "sample_organism": "Oryza sativa", "sample_type": "RNA", "channel_count": "2", "sample_count": "4", "value_type": "log ratio", "reference_series": "GSE661", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS984", "description": "abscisic acid", "sample_id": [ "GSM9855", "GSM9856" ], "type": "agent", "id": "GDS984_1" }, { "dataset_id": "GDS984", "description": "gibberellin", "sample_id": [ "GSM9859", "GSM9860" ], "type": "agent", "id": "GDS984_2" } ], "taxid": "4530", "genes": 19982, "aggregation_function": "mean", "name": "GDS984", "version": 1.0, "instances": "4", "variables": 19984, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS984.tab", "compression": "gz" } ], [ [ "GDS987.tab" ], { "title": "Kidney transplant response to calcineurin inhibitor-free immunosuppression using sirolimus", "description": "Analysis of kidneys from adult renal transplant recipients subjected to calcineurin inhibitor-free immunosuppression using sirolimus. Patients treated with sirolimus have a lower prevalence of chronic allograft nephropathy compared to those treated with cyclosporine, a calcineurin inhibitor.", "type": "Expression profiling by array", "pubmed_id": "15476476", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "41", "value_type": "count", "reference_series": "GSE1743", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS987", "description": "cyclosporine", "sample_id": [ "GSM30418", "GSM30419", "GSM30420", "GSM30421", "GSM30422", "GSM30423", "GSM30424", "GSM30425", "GSM30426", "GSM30427", "GSM30428", "GSM30429", "GSM30430", "GSM30431", "GSM30432", "GSM30433", "GSM30434", "GSM30435", "GSM30436", "GSM30437", "GSM30438", "GSM30439" ], "type": "agent", "id": "GDS987_1" }, { "dataset_id": "GDS987", "description": "sirolimus", "sample_id": [ "GSM30440", "GSM30441", "GSM30442", "GSM30443", "GSM30444", "GSM30445", "GSM30446", "GSM30447", "GSM30448", "GSM30449", "GSM30450", "GSM30451", "GSM30452", "GSM30453", "GSM30454", "GSM30455", "GSM30456", "GSM30457", "GSM30458" ], "type": "agent", "id": "GDS987_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS987", "version": 1.0, "instances": "41", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS987.tab", "compression": "gz" } ], [ [ "GDS988.tab" ], { "title": "Kaposi's sarcoma-associated herpesvirus LANA overexpression in B lymphoid cells: time course", "description": "Expression profiling of B lymphoid cell lines overexpressing the latency-associated nuclear antigen (LANA) of Kaposi's sarcoma-associated herpesvirus. B cells made to express LANA from a tetracycline inducible promoter. Expression examined at various time points up to 48 hours after induction.", "type": "Expression profiling by array", "pubmed_id": [ "15525642", "16641275" ], "platform": "GPL8300", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12625", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "14", "value_type": "count", "reference_series": "GSE1880", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS988", "description": "293", "sample_id": [ "GSM33144", "GSM33145", "GSM33146" ], "type": "cell line", "id": "GDS988_1" }, { "dataset_id": "GDS988", "description": "Jurkat", "sample_id": [ "GSM33147", "GSM33148", "GSM33149", "GSM33150" ], "type": "cell line", "id": "GDS988_2" }, { "dataset_id": "GDS988", "description": "BJAB", "sample_id": [ "GSM33137", "GSM33138", "GSM33139", "GSM33140", "GSM33141", "GSM33142", "GSM33143" ], "type": "cell line", "id": "GDS988_3" }, { "dataset_id": "GDS988", "description": "mock", "sample_id": [ "GSM33141", "GSM33142", "GSM33143", "GSM33144", "GSM33150" ], "type": "protocol", "id": "GDS988_4" }, { "dataset_id": "GDS988", "description": "induction", "sample_id": [ "GSM33137", "GSM33138", "GSM33139", "GSM33140", "GSM33145", "GSM33146", "GSM33147", "GSM33148", "GSM33149" ], "type": "protocol", "id": "GDS988_5" }, { "dataset_id": "GDS988", "description": "0 h", "sample_id": [ "GSM33144", "GSM33150" ], "type": "time", "id": "GDS988_6" }, { "dataset_id": "GDS988", "description": "12 h", "sample_id": [ "GSM33137", "GSM33141", "GSM33142" ], "type": "time", "id": "GDS988_7" }, { "dataset_id": "GDS988", "description": "18 h", "sample_id": [ "GSM33145", "GSM33147" ], "type": "time", "id": "GDS988_8" }, { "dataset_id": "GDS988", "description": "24 h", "sample_id": [ "GSM33138" ], "type": "time", "id": "GDS988_9" }, { "dataset_id": "GDS988", "description": "30 h", "sample_id": [ "GSM33146", "GSM33148" ], "type": "time", "id": "GDS988_10" }, { "dataset_id": "GDS988", "description": "36 h", "sample_id": [ "GSM33139", "GSM33143" ], "type": "time", "id": "GDS988_11" }, { "dataset_id": "GDS988", "description": "42 h", "sample_id": [ "GSM33149" ], "type": "time", "id": "GDS988_12" }, { "dataset_id": "GDS988", "description": "48 h", "sample_id": [ "GSM33140" ], "type": "time", "id": "GDS988_13" } ], "taxid": "9606", "genes": 9471, "aggregation_function": "mean", "name": "GDS988", "version": 1.0, "instances": "14", "variables": 9475, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS988.tab", "compression": "gz" } ], [ [ "GDS989.tab" ], { "title": "Kaposi's sarcoma-associated herpesvirus and Epstein-Barr virus infected cell lines", "description": "Expression profiling of cell lines BCBL-1 and BC-3 infected by Kaposi's sarcoma-associated herpesvirus (KSHV), Raji infected by the Epstein-Barr virus (EBV), and BC-1 infected by both viruses. Results identify expression patterns specific to KSHV-infected primary effusion lymphoma derived cells.", "type": "Expression profiling by array", "pubmed_id": [ "15525642", "16641275" ], "platform": "GPL91", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12626", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "count", "reference_series": "GSE1880", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS989", "description": "control", "sample_id": [ "GSM33155", "GSM33156" ], "type": "infection", "id": "GDS989_1" }, { "dataset_id": "GDS989", "description": "EBV", "sample_id": [ "GSM33154" ], "type": "infection", "id": "GDS989_2" }, { "dataset_id": "GDS989", "description": "KSHV", "sample_id": [ "GSM33134", "GSM33135" ], "type": "infection", "id": "GDS989_3" }, { "dataset_id": "GDS989", "description": "KSHV and EBV", "sample_id": [ "GSM33136" ], "type": "infection", "id": "GDS989_4" }, { "dataset_id": "GDS989", "description": "BJAB", "sample_id": [ "GSM33155" ], "type": "cell line", "id": "GDS989_5" }, { "dataset_id": "GDS989", "description": "DG75", "sample_id": [ "GSM33156" ], "type": "cell line", "id": "GDS989_6" }, { "dataset_id": "GDS989", "description": "Raji", "sample_id": [ "GSM33154" ], "type": "cell line", "id": "GDS989_7" }, { "dataset_id": "GDS989", "description": "BCBL-1", "sample_id": [ "GSM33134" ], "type": "cell line", "id": "GDS989_8" }, { "dataset_id": "GDS989", "description": "BC-3", "sample_id": [ "GSM33135" ], "type": "cell line", "id": "GDS989_9" }, { "dataset_id": "GDS989", "description": "BC-1", "sample_id": [ "GSM33136" ], "type": "cell line", "id": "GDS989_10" } ], "taxid": "9606", "genes": 9470, "aggregation_function": "mean", "name": "GDS989", "version": 1.0, "instances": "6", "variables": 9473, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS989.tab", "compression": "gz" } ], [ [ "GDS99.tab" ], { "title": "UV exposure time course (ecoli_4.3)", "description": "Time course of UV-responsive genes and their role in cellular recovery. MG1655 wild type strains analyzed.", "type": "Expression profiling by array", "pubmed_id": "11333217", "platform": "GPL17", "platform_organism": "Escherichia coli", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "4896", "sample_organism": "Escherichia coli", "sample_type": "RNA", "channel_count": "2", "sample_count": "7", "value_type": "log ratio", "reference_series": "GSE9", "order": "none", "update_date": "Feb 21 2013", "subsets": [ { "dataset_id": "GDS99", "description": "not irradiated", "sample_id": [ "GSM507", "GSM511" ], "type": "protocol", "id": "GDS99_1" }, { "dataset_id": "GDS99", "description": "irradiated", "sample_id": [ "GSM510", "GSM506", "GSM508", "GSM509", "GSM512" ], "type": "protocol", "id": "GDS99_2" }, { "dataset_id": "GDS99", "description": "5 minute", "sample_id": [ "GSM510" ], "type": "time", "id": "GDS99_3" }, { "dataset_id": "GDS99", "description": "10 minute", "sample_id": [ "GSM506" ], "type": "time", "id": "GDS99_4" }, { "dataset_id": "GDS99", "description": "20 minute", "sample_id": [ "GSM508", "GSM507" ], "type": "time", "id": "GDS99_5" }, { "dataset_id": "GDS99", "description": "40 minute", "sample_id": [ "GSM509" ], "type": "time", "id": "GDS99_6" }, { "dataset_id": "GDS99", "description": "60 minute", "sample_id": [ "GSM512", "GSM511" ], "type": "time", "id": "GDS99_7" } ], "taxid": "562", "genes": 4272, "aggregation_function": "mean", "name": "GDS99", "version": 1.0, "instances": "7", "variables": 4275, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS99.tab", "compression": "gz" } ], [ [ "GDS991.tab" ], { "title": "Phosphomannose isomerase PMI40 deletion strain response to excess mannose", "description": "Expression profiling of a phosphomannose isomerase PMI40 deletion strain growing on media with various mannose concentrations up to 5 g/liter. Results provide insight into the cause of slow growth exhibited by the PMI40 deletion strain in media with excess mannose.", "type": "Expression profiling by array", "pubmed_id": "15520001", "platform": "GPL90", "platform_organism": "Saccharomyces cerevisiae", "platform_technology_type": "in situ oligonucleotide", "feature_count": "9335", "sample_organism": "Saccharomyces cerevisiae", "sample_type": "RNA", "channel_count": "1", "sample_count": "15", "value_type": "count", "reference_series": "GSE1938", "order": "ordered", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS991", "description": "0.75 g/L", "sample_id": [ "GSM34752", "GSM34753", "GSM34754" ], "type": "dose", "id": "GDS991_1" }, { "dataset_id": "GDS991", "description": "1 g/L", "sample_id": [ "GSM34764", "GSM34765", "GSM34766" ], "type": "dose", "id": "GDS991_2" }, { "dataset_id": "GDS991", "description": "1.5 g/L", "sample_id": [ "GSM34761", "GSM34762", "GSM34763" ], "type": "dose", "id": "GDS991_3" }, { "dataset_id": "GDS991", "description": "3 g/L", "sample_id": [ "GSM34755", "GSM34756", "GSM34757" ], "type": "dose", "id": "GDS991_4" }, { "dataset_id": "GDS991", "description": "5 g/L", "sample_id": [ "GSM34758", "GSM34759", "GSM34760" ], "type": "dose", "id": "GDS991_5" } ], "taxid": "4932", "genes": 7860, "aggregation_function": "mean", "name": "GDS991", "version": 1.0, "instances": "15", "variables": 7862, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS991.tab", "compression": "gz" } ], [ [ "GDS992.tab" ], { "title": "Endoplasmic reticulum membrane-associated genes in breast cancer cell line MCF-7", "description": "Identification of genes whose mRNA are translated from the endoplasmic reticulum (ER) in the breast cancer cell line MCF-7. Secreted and membrane-bound proteins are preferentially translated in the ER. Results provide insight into the association of membrane-bound proteins and breast cancer.", "type": "Expression profiling by array", "pubmed_id": "15574777", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "6", "value_type": "transformed count", "reference_series": "GSE1400", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS992", "description": "cytosolic fraction", "sample_id": [ "GSM23117", "GSM23118", "GSM23119" ], "type": "protocol", "id": "GDS992_1" }, { "dataset_id": "GDS992", "description": "membrane fraction", "sample_id": [ "GSM23120", "GSM23121", "GSM23122" ], "type": "protocol", "id": "GDS992_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS992", "version": 1.0, "instances": "6", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS992.tab", "compression": "gz" } ], [ [ "GDS993.tab" ], { "title": "Naive CD8+ T cells proliferative response to lymphopenia: time course", "description": "Analysis of OT-I CD8+ T cells from lymphopenic C57BL/6s. OT-I CD8+ T cells transferred into C57BL/6s, irradiated to induce lymphopenia. OT-I CD8+ T cells examined at various time points up to 115 days after transfer. Results provide insight into mechanisms regulating homeostatic proliferation.", "type": "Expression profiling by array", "pubmed_id": "15548615", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "19", "value_type": "count", "reference_series": "GSE1921", "order": "ordered", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS993", "description": "unirradiated", "sample_id": [ "GSM34419", "GSM34420", "GSM34421", "GSM34422" ], "type": "protocol", "id": "GDS993_1" }, { "dataset_id": "GDS993", "description": "irradiated", "sample_id": [ "GSM34403", "GSM34404", "GSM34405", "GSM34406", "GSM34407", "GSM34408", "GSM34410", "GSM34411", "GSM34412", "GSM34413", "GSM34414", "GSM34415", "GSM34416", "GSM34417", "GSM34418" ], "type": "protocol", "id": "GDS993_2" }, { "dataset_id": "GDS993", "description": "6 d", "sample_id": [ "GSM34403", "GSM34404", "GSM34405", "GSM34406", "GSM34407", "GSM34408", "GSM34410", "GSM34411", "GSM34419", "GSM34420", "GSM34421", "GSM34422" ], "type": "time", "id": "GDS993_3" }, { "dataset_id": "GDS993", "description": "40 d", "sample_id": [ "GSM34412", "GSM34413", "GSM34414", "GSM34415" ], "type": "time", "id": "GDS993_4" }, { "dataset_id": "GDS993", "description": "115 d", "sample_id": [ "GSM34416", "GSM34417", "GSM34418" ], "type": "time", "id": "GDS993_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS993", "version": 1.0, "instances": "19", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS993.tab", "compression": "gz" } ], [ [ "GDS994.tab" ], { "title": "Segmental trisomy Ts1Cje model for Down syndrome", "description": "Expression profiling of brain cerebella from Ts1Cje males at postnatal days 0, 15, and 30. RNA pooled from 3 males at each developmental stage. Results provide insight into the molecular changes contributing to the pathogenesis of Down syndrome.", "type": "Expression profiling by array", "pubmed_id": "15590701", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "12", "value_type": "count", "reference_series": "GSE1611", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS994", "description": "C57BL/6", "sample_id": [ "GSM27472", "GSM27473", "GSM27474", "GSM27475", "GSM27476", "GSM27477" ], "type": "strain", "id": "GDS994_1" }, { "dataset_id": "GDS994", "description": "Ts1Cje", "sample_id": [ "GSM27478", "GSM27479", "GSM27480", "GSM27481", "GSM27482", "GSM27483" ], "type": "strain", "id": "GDS994_2" }, { "dataset_id": "GDS994", "description": "P0", "sample_id": [ "GSM27472", "GSM27473", "GSM27478", "GSM27479" ], "type": "age", "id": "GDS994_3" }, { "dataset_id": "GDS994", "description": "P15", "sample_id": [ "GSM27474", "GSM27475", "GSM27480", "GSM27481" ], "type": "age", "id": "GDS994_4" }, { "dataset_id": "GDS994", "description": "P30", "sample_id": [ "GSM27476", "GSM27477", "GSM27482", "GSM27483" ], "type": "age", "id": "GDS994_5" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS994", "version": 1.0, "instances": "12", "variables": 9564, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS994.tab", "compression": "gz" } ], [ [ "GDS995.tab" ], { "title": "Vitamin E deficiency effect on distal colon", "description": "Expression profiling of distal colons from 8 Hooded Lister males fed a vitamin E deficient diet for 12 weeks. Vitamin E deficiency is associated with inflammatory bowel disease and colon cancer. Results provide insight into the contribution of vitamin E deficiency to colon pathologies.", "type": "Expression profiling by array", "pubmed_id": "15506941", "platform": "GPL155", "platform_organism": "Rattus norvegicus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "216", "sample_organism": "Rattus norvegicus", "sample_type": "RNA", "channel_count": "1", "sample_count": "10", "value_type": "count", "reference_series": "GSE1063", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS995", "description": "vitamin E supplemented diet", "sample_id": [ "GSM17216", "GSM17217", "GSM17218", "GSM17219", "GSM17220" ], "type": "protocol", "id": "GDS995_1" }, { "dataset_id": "GDS995", "description": "vitamin E deficient diet", "sample_id": [ "GSM17221", "GSM17222", "GSM17223", "GSM17224", "GSM17225" ], "type": "protocol", "id": "GDS995_2" } ], "taxid": "10116", "genes": 215, "aggregation_function": "mean", "name": "GDS995", "version": 1.0, "instances": "10", "variables": 217, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS995.tab", "compression": "gz" } ], [ [ "GDS996.tab" ], { "title": "DNase II and type I interferon receptor double null mutation effect on fetal liver", "description": "Analysis of fetal livers of E14.5 embryos lacking DNaseII (DNase2-/-) and type I interferon receptor (Ifnar-/-) or DNaseII alone. DNase2-/- embryos exhibit dysregulated interferon target genes and die in utero. DNase2-/-, Ifnar-/- embryos exhibit normal interferon target gene regulation and survive.", "type": "Expression profiling by array", "pubmed_id": "15568025", "platform": "GPL1524", "platform_organism": "Mus musculus", "platform_technology_type": "spotted DNA/cDNA", "feature_count": "20289", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "3", "value_type": "count", "reference_series": "GSE1859", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS996", "description": "wild type", "sample_id": [ "GSM32833" ], "type": "genotype/variation", "id": "GDS996_1" }, { "dataset_id": "GDS996", "description": "DNase II deficient", "sample_id": [ "GSM32834" ], "type": "genotype/variation", "id": "GDS996_2" }, { "dataset_id": "GDS996", "description": "DNase II, IFN-IR double deficient", "sample_id": [ "GSM32835" ], "type": "genotype/variation", "id": "GDS996_3" } ], "taxid": "10090", "genes": 18436, "aggregation_function": "mean", "name": "GDS996", "version": 1.0, "instances": "3", "variables": 18438, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS996.tab", "compression": "gz" } ], [ [ "GDS997.tab" ], { "title": "Transcription factor CHOP null mutation effect on fibroblasts subjected to ER stress: time course", "description": "Expression profiling of embryonic fibroblasts deleted for the transcription factor CHOP. Fibroblast treated with 2 ug/ml tunicamycin for 4 or 8 hours to induce endoplasmic reticulum (ER) stress. Results provide insight into molecular mechanisms regulating the response to ER stress.", "type": "Expression profiling by array", "pubmed_id": "15601821", "platform": "GPL81", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "12488", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "24", "value_type": "count", "reference_series": "GSE2082", "order": "none", "update_date": "Feb 22 2013", "subsets": [ { "dataset_id": "GDS997", "description": "untreated", "sample_id": [ "GSM37624", "GSM37631", "GSM37632", "GSM37656", "GSM37657", "GSM37658", "GSM37659", "GSM37660" ], "type": "agent", "id": "GDS997_1" }, { "dataset_id": "GDS997", "description": "tunicamycin", "sample_id": [ "GSM37661", "GSM37662", "GSM37663", "GSM37664", "GSM37665", "GSM37666", "GSM37667", "GSM37668", "GSM37669", "GSM37670", "GSM37671", "GSM37672", "GSM37673", "GSM37674", "GSM37675", "GSM37676" ], "type": "agent", "id": "GDS997_2" }, { "dataset_id": "GDS997", "description": "0 h", "sample_id": [ "GSM37624", "GSM37631", "GSM37632", "GSM37656", "GSM37657", "GSM37658", "GSM37659", "GSM37660" ], "type": "time", "id": "GDS997_3" }, { "dataset_id": "GDS997", "description": "4 h", "sample_id": [ "GSM37661", "GSM37662", "GSM37663", "GSM37664", "GSM37665", "GSM37666", "GSM37667", "GSM37668" ], "type": "time", "id": "GDS997_4" }, { "dataset_id": "GDS997", "description": "8 h", "sample_id": [ "GSM37669", "GSM37670", "GSM37671", "GSM37672", "GSM37673", "GSM37674", "GSM37675", "GSM37676" ], "type": "time", "id": "GDS997_5" }, { "dataset_id": "GDS997", "description": "wild type", "sample_id": [ "GSM37624", "GSM37631", "GSM37632", "GSM37656", "GSM37661", "GSM37662", "GSM37663", "GSM37664", "GSM37669", "GSM37670", "GSM37671", "GSM37672" ], "type": "genotype/variation", "id": "GDS997_6" }, { "dataset_id": "GDS997", "description": "CHOP deletion", "sample_id": [ "GSM37657", "GSM37658", "GSM37659", "GSM37660", "GSM37665", "GSM37666", "GSM37667", "GSM37668", "GSM37673", "GSM37674", "GSM37675", "GSM37676" ], "type": "genotype/variation", "id": "GDS997_7" } ], "taxid": "10090", "genes": 9561, "aggregation_function": "mean", "name": "GDS997", "version": 1.0, "instances": "24", "variables": 9565, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS997.tab", "compression": "gz" } ], [ [ "GDS998.tab" ], { "title": "Treacher Collins' syndrome Tcof1 gene overexpression and knockdown effect on neuroblastoma cells", "description": "Expression profiling of neuroblastoma N1E-115 cells with the Treacher Collins' syndrome (TCS) Tcof1 gene overexpressed or inactivated. TCS is an autosomal dominant dysostosis of the face and lower jaw. Results provide insight into the role of Tcof1 in neuroblastoma cell proliferation.", "type": "Expression profiling by array", "pubmed_id": "15522210", "platform": "GPL339", "platform_organism": "Mus musculus", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22690", "sample_organism": "Mus musculus", "sample_type": "RNA", "channel_count": "1", "sample_count": "9", "value_type": "count", "reference_series": "GSE1956", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS998", "description": "N1E-115 wild type", "sample_id": [ "GSM34977", "GSM34978", "GSM34979" ], "type": "cell line", "id": "GDS998_1" }, { "dataset_id": "GDS998", "description": "N1E-115 Tcof1 overexpressed", "sample_id": [ "GSM34968", "GSM34969", "GSM34970" ], "type": "cell line", "id": "GDS998_2" }, { "dataset_id": "GDS998", "description": "N1E-115 Tcof1 inactivated", "sample_id": [ "GSM34980", "GSM34981", "GSM34982" ], "type": "cell line", "id": "GDS998_3" } ], "taxid": "10090", "genes": 13876, "aggregation_function": "mean", "name": "GDS998", "version": 1.0, "instances": "9", "variables": 13878, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS998.tab", "compression": "gz" } ], [ [ "GDS999.tab" ], { "title": "Bronchoalveolar lavage cells of lung transplant recipients with acute rejection", "description": "Expression profiling of bronchoalveolar lavage cells of lung transplant recipients with acute rejection. Rejection status determined from biopsies. Results identify possible gene markers of lung transplant rejection.", "type": "Expression profiling by array", "pubmed_id": "12958056", "platform": "GPL96", "platform_organism": "Homo sapiens", "platform_technology_type": "in situ oligonucleotide", "feature_count": "22283", "sample_organism": "Homo sapiens", "sample_type": "RNA", "channel_count": "1", "sample_count": "34", "value_type": "count", "reference_series": "GSE2018", "order": "none", "update_date": "Oct 10 2012", "subsets": [ { "dataset_id": "GDS999", "description": "no rejection", "sample_id": [ "GSM36424", "GSM36425", "GSM36426", "GSM36427", "GSM36428", "GSM36429", "GSM36430", "GSM36431", "GSM36434", "GSM36435", "GSM36437", "GSM36439", "GSM36440", "GSM36441", "GSM36442", "GSM36443", "GSM36444", "GSM36445", "GSM36446", "GSM36447", "GSM36448", "GSM36449", "GSM36450", "GSM36451", "GSM36454", "GSM36455", "GSM36456" ], "type": "disease state", "id": "GDS999_1" }, { "dataset_id": "GDS999", "description": "acute rejection", "sample_id": [ "GSM36423", "GSM36432", "GSM36433", "GSM36436", "GSM36438", "GSM36452", "GSM36453" ], "type": "disease state", "id": "GDS999_2" } ], "taxid": "9606", "genes": 14063, "aggregation_function": "mean", "name": "GDS999", "version": 1.0, "instances": "34", "variables": 14065, "target": "", "gene_as_attribute_name": true, "gene_id_attribute": "Entrez ID", "url": "http://file.biolab.si/geo/GDS999.tab", "compression": "gz" } ] ]